RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018674
(352 letters)
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional.
Length = 474
Score = 631 bits (1629), Expect = 0.0
Identities = 259/351 (73%), Positives = 310/351 (88%), Gaps = 1/351 (0%)
Query: 1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
M R L+L+RP +A LPEV DRK+PF+EKV++T I+LF+FLVC Q+PLYGI S++
Sbjct: 1 MAKMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSS 60
Query: 61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
+DPFYWMRVILASNRGT+MELGI+PIVTS +VMQLLAGSKII+VD N +EDRAL GAQK
Sbjct: 61 SDPFYWMRVILASNRGTLMELGISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQK 120
Query: 121 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180
LLG++I +GEAVAYV SGMYG ++++G GNAILII+QL FAGI+VI LDELLQKGYGLGS
Sbjct: 121 LLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGS 180
Query: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240
GISLFIATNICE IIWKAFSPTTIN+GRG EFEGA+IALFHLL TR+DK+RAL+EAFYR
Sbjct: 181 GISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRP 240
Query: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300
+LPN+TNLLATVL+FL+VIYFQGFRV LP++S+ RGQQ SYPIKLFYTSN+PIILQ+AL
Sbjct: 241 HLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTAL 300
Query: 301 VSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351
VSNLYF SQ++YRR+ NF +NLLG+W+E EYS GQ VPVGG+AYY++ P+
Sbjct: 301 VSNLYFFSQILYRRFKNNFLINLLGQWQEVEYS-GQSVPVGGLAYYLSPPN 350
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 280 bits (720), Expect = 2e-91
Identities = 128/342 (37%), Positives = 191/342 (55%), Gaps = 21/342 (6%)
Query: 11 VRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVI 70
+ P L LP V+ VPF+EK+ +T I L ++ + + +PLYGI S + D F +R+I
Sbjct: 7 LEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGI-SQSSQDLFELLRII 65
Query: 71 LASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGE 130
A + GT+++LGI PIVT+G+++QLL GSK+I +D + EDRAL G QKLL I++ E
Sbjct: 66 FAGSFGTLLQLGIGPIVTAGIILQLLVGSKLINLDLSDPEDRALFQGLQKLLAIVMIALE 125
Query: 131 AVAYVLSGMYGSVNQLGVGN--AILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIAT 188
A +VL+G +G L A+LI +QL GI++I LDEL+ K +G+GSGISLFI
Sbjct: 126 AAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVSK-WGIGSGISLFILA 184
Query: 189 NICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNL 248
+ + I F+ T G G + ALF + + N + L
Sbjct: 185 GVSQTIFVGLFNWLTGGQG---LPVGFIPALFSAITSGN----LTLALLLTTRGLLLLGL 237
Query: 249 LATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFIS 308
+ T++IFLIV+Y + RV +P+ RG +G YP+K Y S +P+IL AL +N+
Sbjct: 238 ITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFG 297
Query: 309 QLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAP 350
QL+ R + +LG Y P+ G+AYY++ P
Sbjct: 298 QLLQRLG-----IPILG-----TYDSSGASPISGLAYYLSPP 329
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 215 bits (550), Expect = 8e-67
Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 40/310 (12%)
Query: 31 REKVIYTVISLFIFLVCSQLPLYGI------HSTTGADPFYWMRVILASNRG--TVMELG 82
REK+++T+ L +F + + +P+ GI + F + G ++ LG
Sbjct: 1 REKLLFTLGLLVLFRIGTFIPIPGIDASAFQNLIQQNPIFGLLNTFSGGALGQISIFALG 60
Query: 83 ITPIVTSGLVMQLLAGSKIIEVDNNVRE---DRALLNGAQKLLGIIIAIGEAVAYVLSGM 139
I+P +T+ +++QLL G + +E R +N + L +I+A +++ V++GM
Sbjct: 61 ISPYITASIIIQLLTGDVPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGM 120
Query: 140 YGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAF 199
YG V G +LI++QL +IV+ L E + K YG+G+GISL I I I
Sbjct: 121 YGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK-YGIGNGISLLIFAGIAATIPSGLL 179
Query: 200 SPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVI 259
PT + KVR L LP + L+AT+++F +V+
Sbjct: 180 QPTEVRQ---------------------SKVRDLISFLQN--LPFLLYLIATIIVFAVVV 216
Query: 260 YFQGFRVVLPVRS-----KNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRR 314
+ Q R +P++S Q P+KL Y +P+I SAL+SN ISQ +
Sbjct: 217 FVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSN 276
Query: 315 YSGNFFVNLL 324
G +F+N +
Sbjct: 277 QGGAWFLNPI 286
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 192 bits (489), Expect = 2e-57
Identities = 91/353 (25%), Positives = 157/353 (44%), Gaps = 54/353 (15%)
Query: 13 PFLAFLPEVQSADRKVPF-REKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL 71
P L LPEV S KVP R+++++T+ +L ++ + S +P+ GI+ +D F R ++
Sbjct: 1 PLLPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLI 60
Query: 72 --------ASNRGTVMELGITPIVTSGLVMQLL-AGSKIIE-VDNNVREDRALLNGAQKL 121
A +RG++ LGI P +T+ ++MQLL GS I++ +D E R + +
Sbjct: 61 LFNMFSGGALSRGSIFALGIMPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRY 120
Query: 122 LGIIIAIGEAVAYVLSGMY----GSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYG 177
L +++A+ +A+ VL G V G+ +LII+QL + ++ L E + K G
Sbjct: 121 LTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITK-RG 179
Query: 178 LGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAF 237
+G+GISL I I ++ F GA+ A
Sbjct: 180 IGNGISLIIFAGIVASLPSAIFGI-----------IGALPTG----------------AL 212
Query: 238 YRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRS---KNARGQQGSYPIKLFYTSNMPI 294
+ L + +L T+ I +V+Y + R +P++ ++ RGQ P+KL Y +P+
Sbjct: 213 FLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPV 272
Query: 295 ILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYI 347
I S+L+ I+Q L + S + G Y
Sbjct: 273 IFASSLLLFPSTIAQF--------LGNGGLAYYLSPLTSISDALSPGSPVYIA 317
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 183 bits (466), Expect = 4e-55
Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 52/285 (18%)
Query: 77 TVMELGITPIVTSGLVMQLL--AGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAY 134
++ LGI P +T+ ++MQLL G K+ ++D E R + + L +++A+ +A+
Sbjct: 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60
Query: 135 VL-SGMYGSVNQL-----GVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIAT 188
VL G YG+ + G N +LI++QL + ++ L EL+ K YG+G+GISL I
Sbjct: 61 VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITK-YGIGNGISLIIFA 119
Query: 189 NICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNL 248
I +I W A+I LF LL + L Y + L
Sbjct: 120 GIVASIPW------------------AIINLFSLLSSAG----GLLSILY-----LLLLL 152
Query: 249 LATVLIFLIVIYFQGFRVVLPVRS-----KNARGQQGSYPIKLFYTSNMPIILQSALVSN 303
LAT+ + L+V+Y Q R +P++ RGQ PIKL Y +PII S+L++N
Sbjct: 153 LATLAVILLVVYLQEARRRIPIQYAKRVVGGGRGQSSYLPIKLNYAGVIPIIFASSLLAN 212
Query: 304 LYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYIT 348
I+Q + + L Y+P+G Y +
Sbjct: 213 PQTIAQFLGSSFPLWPVSGLA-----------YYLPIGSPVYILF 246
>gnl|CDD|204513 pfam10559, Plug_translocon, Plug domain of Sec61p. The
Sec61/SecY translocon mediates translocation of
proteins across the membrane and integration of
membrane proteins into the lipid bilayer. The structure
of the translocon revealed a plug domain blocking the
pore on the lumenal side.The plug is unlikely to be
important for sealing the translocation pore in yeast
but it plays a role in stabilising Sec61p during
translocon formation. The domain runs from residues
52-74.
Length = 35
Score = 63.6 bits (156), Expect = 1e-13
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 42 FIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRG 76
++LV SQ+PLYG++S+ +DPFYW+R ILASNRG
Sbjct: 1 LLYLVLSQIPLYGLYSSDSSDPFYWLRAILASNRG 35
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 43.6 bits (104), Expect = 9e-05
Identities = 63/301 (20%), Positives = 120/301 (39%), Gaps = 63/301 (20%)
Query: 31 REKVIYTVISLFIFLVCSQLPLYGIHST-------TGADPFYWMRVIL---ASNRGTVME 80
R+++++T+ +L +F + S +P+ GI + + + A +R ++
Sbjct: 15 RKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFA 74
Query: 81 LGITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYV--L 136
LGI P +T+ ++MQLL K+ E+ R +N + L +++A +++ L
Sbjct: 75 LGIMPYITASIIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGL 134
Query: 137 SGMYGSVNQLGVGNAILIIVQLCF---AG-IIVICLDELLQKGYGLGSGISLFIATNICE 192
+ M G + + + + AG + ++ L E + + G+G+GISL I I
Sbjct: 135 NSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITE-RGIGNGISLIIFAGIV- 192
Query: 193 NIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATV 252
A A+ F R ++ L +
Sbjct: 193 -----------------AGLPSAIGQTF---------------ELARTGSLSILVFLLLI 220
Query: 253 LIFLIVIYF-----QGFR---VVLPVRSKNAR--GQQGSY-PIKLFYTSNMPIILQSALV 301
++FL VI F Q R V R + G Q SY P+K+ +P+I S+++
Sbjct: 221 VLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSIL 280
Query: 302 S 302
Sbjct: 281 L 281
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 34.2 bits (79), Expect = 0.089
Identities = 34/164 (20%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 33 KVIYTVISLFIFLVCSQLPLYGIHST---TGADPFYWMRVILAS---NRGTVMELGITPI 86
K+++T LFI+++ S + + + G + F + + LG+ P
Sbjct: 15 KILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTGGDLRTLNIFSLGLGPW 74
Query: 87 VTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQL 146
+TS +++QL + K + E++ +++L +IIA+ +++A +LS S ++
Sbjct: 75 MTSMIILQLFSYRKRDGLMKQTIEEQHY---RERILTLIIAVIQSLAVILS--LPSKERI 129
Query: 147 GVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
N +L + L + ++ L + L YG+G + + + + I
Sbjct: 130 SQTNILLNTLILVTGTMFLVWLSD-LNARYGIGGPMPIVLVSMI 172
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 31.5 bits (72), Expect = 0.76
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 81 LGITPIVTSGLVMQLLAGSKIIEVDNNVRED----RALLNGAQKLLGIIIAIGEAVAYVL 136
LGI P + + +++QLL I ++ +E+ R +N + L + AI +++
Sbjct: 69 LGILPYINASIIIQLLTSI-IPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISF 127
Query: 137 SGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENI 194
N + A+ I++ L +IV+ L EL+ + GLG+G SL I NI N+
Sbjct: 128 WLKPYLFN-WNLLLALEIVLALTSGSMIVLWLSELITE-KGLGNGSSLLIFFNIVSNL 183
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2.
Members of this family are restricted to the Firmicutes
lineage (low-GC Gram-positive bacteria) and appear to be
paralogous to, and much more divergent than, the
preprotein translocase SecY. Members include the SecY2
protein of the accessory Sec system in Streptococcus
gordonii, involved in export of the highly glycosylated
platelet-binding protein GspB [Protein fate, Protein and
peptide secretion and trafficking].
Length = 395
Score = 30.9 bits (70), Expect = 0.98
Identities = 40/174 (22%), Positives = 84/174 (48%), Gaps = 21/174 (12%)
Query: 33 KVIYTVISLFIFLVCSQLPLYGIHSTT-----GADPFYWMRVILASNRG------TVMEL 81
K+++T L I+++ S +P+ + + + F+ I +N G ++ L
Sbjct: 5 KILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFF---KIAIANTGGNLTTLSIFSL 61
Query: 82 GITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYG 141
G+ P +TS +++QL + +K D +++ ++ L +IIAI + +A + S +
Sbjct: 62 GLGPWMTSMIILQLFSFTKSDGFDAQSPKEQQYR---ERFLTLIIAIIQGLAIIHS--FT 116
Query: 142 SVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENII 195
+ N L N +L + L +++ L +L K YG+G G + ++ +NI
Sbjct: 117 NKNGLSDFNMLLATLILVTGTCLLVWLADLNAK-YGIG-GSMPIVLVSMLKNIP 168
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked proton
utilization. As shown for Escherichia coli EriC, these
channels can counterbalance the electric current
produced by the outwardly directed virtual proton pump
linked to amino acid decarboxylation. The EriC proteins
belong to the ClC superfamily of chloride ion channels,
which share a unique double-barreled architecture and
voltage-dependent gating mechanism. The
voltage-dependent gating is conferred by the permeating
anion itself, acting as the gating charge. In
Escherichia coli EriC, a glutamate residue that
protrudes into the pore is thought to participate in
gating by binding to a Cl- ion site within the
selectivity filter.
Length = 402
Score = 29.8 bits (68), Expect = 2.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 214 GAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRV 266
G V LF L I DK+ LR + Y N LL LI ++ G+ V
Sbjct: 6 GLVAVLFRLGI---DKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLV 55
>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 29.9 bits (67), Expect = 2.6
Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 20 EVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL 71
E + A R+ + + ++ + P++ I+ + GA+ Y++ V+
Sbjct: 239 EARLAYEANEERDNALRRLENIQKLSDLA-FPIFIIYLSIGAELMYYIHVVF 289
>gnl|CDD|211958 TIGR04235, seadorna_VP4, seadornavirus VP4 protein. This protein
family occurs in the seadornavirus virus group, with
designation VP4 in Banna virus, Kadipiro virus, and Liao
ning virus. Although this family has been suggested to
resemble methyltransferases, members show apparent
N-terminal sequence similarity to the outer capsid
protein VP5 of the orbivirus group, such as bluetongue
virus, which also belong to the Reoviridae.
Length = 618
Score = 29.5 bits (66), Expect = 3.3
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 52 LYGIHSTTGADPFYWMRVILASNR---------GTVMELGITP-IVTSGLVMQLLAGSKI 101
LY IH G+ + V + + GT+ G I++ G L G+++
Sbjct: 279 LYVIHPVQGS---LGLVVQMMGDALSYNVFAQYGTLDSSGFGKTILSGGATNTALEGTRV 335
Query: 102 IEVDNNVREDRAL-LNGAQKLLGIIIAIGEAVAY 134
++ V +AL + A + +++ GE V Y
Sbjct: 336 VKFQTKVTAQQALAMTMALQSAVSMLSQGELVGY 369
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans
type. This family is a subset of the members of the
zinc metallopeptidase family M1 (pfam01433), with a
single member characterized in Streptomyces lividans 66
and designated aminopeptidase N. The spectrum of
activity may differ somewhat from the aminopeptidase N
clade of E. coli and most other Proteobacteria, well
separated phylogenetically within the M1 family. The M1
family also includes leukotriene A-4
hydrolase/aminopeptidase (with a bifunctional active
site).
Length = 831
Score = 29.4 bits (66), Expect = 3.7
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 285 KLFYTSNMPIILQSALVSNLYFISQ-LMYRRYSGNFFVNLLGKWKE 329
KL T +P Q A++ + Q L+ Y+ +F NL WK
Sbjct: 725 KLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFANLADIWKR 770
>gnl|CDD|218073 pfam04412, DUF521, Protein of unknown function (DUF521). Family of
hypothetical proteins.
Length = 397
Score = 28.7 bits (65), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 109 REDRALLNG-----AQKLLGIIIAIGEAV 132
E+ A+L+G QK + I++A+GE
Sbjct: 5 DEEEAMLDGEYGEAVQKAMEILVALGEIY 33
>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial
oligomycin sensitivity protein) [Energy production and
conversion].
Length = 178
Score = 28.0 bits (63), Expect = 6.2
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 219 LFHLLITRNDKVRALREAFYRQNLPNVTNLLATVL 253
L ++ DK L F + P + N L +
Sbjct: 49 LSSPAVSAEDKKELLISIFKKIGDPLLQNFLRLLA 83
>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990). This
family of proteins are functionally uncharacterized.
Length = 158
Score = 27.6 bits (62), Expect = 6.3
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 204 INSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQG 263
+ SGR FE A AL + R VR + P + L+ G
Sbjct: 25 LGSGREEVFERAAQALLSWRMFRLAGVRVIA--------PATPPEVGRT--VLLRARLGG 74
Query: 264 FRVVLPVR 271
V+ P R
Sbjct: 75 LWVLAPCR 82
>gnl|CDD|224266 COG1347, NqrD, Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrD [Energy production and conversion].
Length = 208
Score = 27.8 bits (62), Expect = 7.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 126 IAIGEAVAYV--LSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQK-GYGLGSGI 182
I +G AV V S + S+ + + N++ IIVQ+ +VI +D+ L+ Y L +
Sbjct: 42 IVMGIAVTLVTGFSSFFVSLIRNYIPNSVRIIVQMAIIASLVIVVDQFLKAYAYELSKQL 101
Query: 183 SLFIATNICENII 195
S+F+ I I+
Sbjct: 102 SVFVGLIITNCIV 114
>gnl|CDD|220467 pfam09911, DUF2140, Uncharacterized protein conserved in bacteria
(DUF2140). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 187
Score = 27.5 bits (62), Expect = 8.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 248 LLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPI 284
LLA L + V++F+ F V PV +A+ +
Sbjct: 10 LLALNLASIAVVFFRLFAPVEPVTKPSAKESKSDAVF 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.143 0.423
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,617,818
Number of extensions: 1885039
Number of successful extensions: 2444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2399
Number of HSP's successfully gapped: 74
Length of query: 352
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 254
Effective length of database: 6,590,910
Effective search space: 1674091140
Effective search space used: 1674091140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)