RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018674
         (352 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  227 bits (580), Expect = 8e-72
 Identities = 116/340 (34%), Positives = 184/340 (54%), Gaps = 40/340 (11%)

Query: 11  VRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVI 70
           + P L  +PEV+   +++ F+EK+ +T I L ++ +   + +Y   +      F + + I
Sbjct: 3   LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTI 61

Query: 71  LASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGE 130
            AS  GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL  G QKLL II+   E
Sbjct: 62  TASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVE 121

Query: 131 AVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
           AV +V +G +G +  L    A L+I+Q+ F  II+I LDE++ K YG+GSGI LFIA  +
Sbjct: 122 AVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGV 177

Query: 191 CENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLA 250
            + I   A  P           EG +    + LI                N+  +  ++ 
Sbjct: 178 SQTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAPIIG 214

Query: 251 TVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQL 310
           T+++FL+V+Y +  RV +P+     +G  G YPIK  Y SN+P+IL +AL +N+      
Sbjct: 215 TIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLA 274

Query: 311 MYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAP 350
           +Y        + +LG ++           V GIAYY++ P
Sbjct: 275 LY-----RMGIPILGHYEGGR-------AVDGIAYYLSTP 302


>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia
           coli [TaxId: 562]}
          Length = 146

 Score = 28.3 bits (63), Expect = 0.77
 Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 93  MQLLAGSKIIEVDNNVREDRALLNGAQKLLGIII-AIGEAVAYVLSGMYGSVNQLGVGNA 151
           +  +   K + +  ++  + + +      + ++   +  A  Y L      ++       
Sbjct: 17  LNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEF--VEISARQTDEH 74

Query: 152 ILIIVQLCFAGIIVICLDELLQKGYGL-----GSGISLFIATNICE 192
           + I+V+    GI +   + +  +G  +     G G+ L +A  I E
Sbjct: 75  LYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITE 120


>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal
          domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 430

 Score = 28.4 bits (62), Expect = 1.3
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 55 IHSTTGADPFYWMR 68
           H     DP+ W+ 
Sbjct: 19 YHGHKVCDPYAWLE 32


>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 41

 Score = 24.9 bits (55), Expect = 2.3
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 209 GAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLAT 251
           G+E+E  +  +  +   R   V ALR ++   N       L T
Sbjct: 1   GSEYETMLTEIMSMGYERERVVAALRASYN--NPHRAVEYLLT 41


>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein,
           GcvT {Escherichia coli [TaxId: 562]}
          Length = 90

 Score = 25.5 bits (56), Expect = 3.8
 Identities = 4/44 (9%), Positives = 13/44 (29%)

Query: 110 EDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAIL 153
            ++ +L     +        +    + SG +       +  A +
Sbjct: 10  TEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARV 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.423 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,297,855
Number of extensions: 59770
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 6
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)