BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018675
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/337 (48%), Positives = 214/337 (63%), Gaps = 21/337 (6%)
Query: 17 LEGHTD-RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
+ H D R W LAW P AG + ASC GD+ +RIW S W CK+VL E H R
Sbjct: 11 VPAHPDSRCWFLAWNP-AGT-----LLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQR 62
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
TVR AWSP G LA+ASFDATTCIW+ D+ECV TLEGHENEVKSV+W SG LLAT
Sbjct: 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
C RDKSVW+WEV +E+ECVSVL H QDVK V WHP+ ++L S SYD+T+K++ E+
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE- 181
Query: 196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 255
D+W C T+ GH ST+W+L+F+ G +L SCSDD T++IW + + G +
Sbjct: 182 --DDWVCCATL----EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235
Query: 256 ----SWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
SW+ +CT+SG+H RTI+ + W + G +A+ DD+++ F E + P++ +
Sbjct: 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295
Query: 311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
+AH DVN V W+P E LLAS SDDG + W+
Sbjct: 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 133/243 (54%), Gaps = 24/243 (9%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+ TLEGH + V S+AW P+ + A+CS DK+V +WE + C +VL H
Sbjct: 98 VTTLEGHENEVKSVAWAPSGN------LLATCSRDKSVWVWEVDEEDEY-ECVSVLNS-H 149
Query: 74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL 133
T+ V+ W PS +LLA+AS+D T ++ + D+ C ATLEGHE+ V S++++ SG L
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 134 ATCGRDKSVWIW-EVMPGNE-----------FECVSVLQG-HAQDVKMVQWHPTMDVLFS 180
A+C D++V IW + +PGNE ++C+ L G H++ + + W L +
Sbjct: 210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT 269
Query: 181 CSYDNTIKVWWAEDTDSDNWHCVQTISES-NNGHSSTIWALSFNAKGDKLV-SCSDDLTI 238
D+ I+V + ED +SD +++ + HS + +++N K L+ SCSDD +
Sbjct: 270 ACGDDAIRV-FQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328
Query: 239 KIW 241
W
Sbjct: 329 AFW 331
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQ-----------SASSRFWN 64
TLEGH VWSLA+ P+ ASCS D+TVRIW Q S S W
Sbjct: 189 TLEGHESTVWSLAFDPSGQ------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242
Query: 65 CKAVLEEMHTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGD-----YECVATL-EGH 117
C L H+RT+ AW LATA DA ED D + A L + H
Sbjct: 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302
Query: 118 ENEVKSVSWNASGT-LLATCGRDKSVWIWE 146
+V V+WN LLA+C D V W+
Sbjct: 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 187/346 (54%), Gaps = 37/346 (10%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM- 72
I++L+ + +++WS D + A+ S D+ +++ S + VL+E
Sbjct: 7 IKSLKLYKEKIWSF--------DFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETA 56
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWE-----DVGGDYECVATLEGHENEVKSVSWN 127
H + +RS AW P LLA SFD+T IW D + + +A +EGHENEVK V+W+
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 128 ASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
G LATC RDKSVWIWE G E+EC+SVLQ H+QDVK V WHP+ +L S SYD+T
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD--KLVSCSDDLTIKIWGAD 244
+++W +D D D+W CV + NGH T+W+ F+ +L S SDD T+++W
Sbjct: 177 VRIW--KDYD-DDWECVAVL----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK-- 227
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 304
D W + H R +++V W G+IAS AD + + E +DG
Sbjct: 228 -YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE-----VDG 281
Query: 305 PSYKMLLKKEKAHDM-DVNSVQW-SPGERRLLASASDDGMIKIWEL 348
+K+ K+ H + ++N V+W + +LA+ DDG++ W L
Sbjct: 282 E-WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 6 DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC 65
D +E+ + +EGH + V +AW DG A+CS DK+V IWE S + C
Sbjct: 92 DRTFEMDLLAIIEGHENEVKGVAWSN----DGY--YLATCSRDKSVWIWETDESGEEYEC 145
Query: 66 KAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
+VL+E H++ V+ W PS LLA++S+D T IW+D D+ECVA L GHE V S
Sbjct: 146 ISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 126 WNASGTLLATC--GRDKSVWIWEVMPGNEFE-----CVSVLQG-HAQDVKMVQW 171
++ + + C D +V +W+ M +E + C ++L H + V V W
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 173/343 (50%), Gaps = 58/343 (16%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
N + +QTL GH+ VW +A+ P DG AS S DKTV++W ++
Sbjct: 126 NRNGQLLQTLTGHSSSVWGVAFSP----DG--QTIASASDDKTVKLWNRNGQ-------- 171
Query: 68 VLEEM--HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
+L+ + H+ +V A+SP G+ +A+AS D T +W G + + TL GH + V+ V+
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVA 228
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
++ G +A+ DK+V +W + + L GH+ V V + P + S S D
Sbjct: 229 FSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
T+K+W + N +QT++ GHSS++W ++F+ G + S SDD T+K+W +
Sbjct: 285 TVKLW------NRNGQLLQTLT----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 333
Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 304
+HL T++G H +++ V +S +G IAS + D +V+ + +
Sbjct: 334 -----------GQHLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN------- 374
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
LL+ H V V +SP + + +ASASDD +K+W
Sbjct: 375 ---GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 413
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 168/340 (49%), Gaps = 58/340 (17%)
Query: 11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE 70
++E LE H+ V +A+ P DG AS S DKTV++W ++ +L+
Sbjct: 6 VKERNRLEAHSSSVRGVAFSP----DG--QTIASASDDKTVKLWNRNGQ--------LLQ 51
Query: 71 EM--HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
+ H+ +V A+SP G+ +A+AS D T +W G + + TL GH + V+ V+++
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSP 108
Query: 129 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 188
G +A+ DK+V +W + + L GH+ V V + P + S S D T+K
Sbjct: 109 DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 189 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 248
+W + N +QT++ GHSS++W ++F+ G + S SDD T+K+W + +
Sbjct: 165 LW------NRNGQLLQTLT----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 214
Query: 249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 307
Q T++G H ++ V +S +G IAS + D +V+ + +
Sbjct: 215 Q------------TLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---------- 251
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
LL+ H VN V + P + + +ASASDD +K+W
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN 290
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 169/343 (49%), Gaps = 58/343 (16%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
N + +QTL GH+ VW +A+ P DG AS S DKTV++W ++
Sbjct: 44 NRNGQLLQTLTGHSSSVWGVAFSP----DG--QTIASASDDKTVKLWNRNGQ-------- 89
Query: 68 VLEEM--HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
+L+ + H+ +VR A+SP G+ +A+AS D T +W G + + TL GH + V V+
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVA 146
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
++ G +A+ DK+V +W + + L GH+ V V + P + S S D
Sbjct: 147 FSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 202
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
T+K+W + N +QT++ GHSS++ ++F+ G + S SDD T+K+W +
Sbjct: 203 TVKLW------NRNGQLLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 252
Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 304
+Q T++G H ++ V + +G IAS + D +V+ + +
Sbjct: 253 QLLQ------------TLTG-HSSSVNGVAFRPDGQTIASASDDKTVKLWNRN------- 292
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
LL+ H V V +SP + + +ASASDD +K+W
Sbjct: 293 ---GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN 331
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 170/343 (49%), Gaps = 58/343 (16%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
N + +QTL GH+ V +A++P DG AS S DKTV++W ++
Sbjct: 249 NRNGQLLQTLTGHSSSVNGVAFRP----DG--QTIASASDDKTVKLWNRNGQ-------- 294
Query: 68 VLEEM--HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
+L+ + H+ +V A+SP G+ +A+AS D T +W G + + TL GH + V V+
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QHLQTLTGHSSSVWGVA 351
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
++ G +A+ DK+V +W + + L GH+ V+ V + P + S S D
Sbjct: 352 FSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
T+K+W + N +QT++ GHSS++W ++F+ + S SDD T+K+W +
Sbjct: 408 TVKLW------NRNGQLLQTLT----GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457
Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 304
+Q T++G H ++ V +S +G IAS + D +V+ + +
Sbjct: 458 QLLQ------------TLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------- 497
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
LL+ H V V +SP + + +ASASDD +K+W
Sbjct: 498 ---GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 536
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 168/343 (48%), Gaps = 58/343 (16%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
N + +QTL GH+ VW +A+ P DG AS S DKTV++W ++
Sbjct: 290 NRNGQLLQTLTGHSSSVWGVAFSP----DG--QTIASASDDKTVKLWNRNGQH------- 336
Query: 68 VLEEM--HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
L+ + H+ +V A+SP G+ +A+AS D T +W G + + TL GH + V+ V+
Sbjct: 337 -LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVA 392
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
++ G +A+ DK+V +W + + L GH+ V V + P + S S D
Sbjct: 393 FSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
T+K+W + N +QT++ GHSS++ ++F+ G + S SDD T+K+W +
Sbjct: 449 TVKLW------NRNGQLLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498
Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 304
+Q T++G H ++ V +S +G IAS + D +V+ + +
Sbjct: 499 QLLQ------------TLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------ 539
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
LL+ H V V +SP + + +ASAS D +K+W
Sbjct: 540 ----QLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 153/346 (44%), Gaps = 48/346 (13%)
Query: 13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
E L GH V + + P V V S S D T+++W+ K
Sbjct: 100 EKYALSGHRSPVTRVIFHP------VFSVMVSASEDATIKVWDYETGDFERTLKG----- 148
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
HT +V+ ++ SGKLLA+ S D T +W+ G +EC+ T+ GH++ V SVS +G
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
+ + RDK++ +WEV G CV GH + V+MV+ + ++ SCS D T++VW
Sbjct: 207 IVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 193 EDTD-----SDNWHCVQTIS-ESNNGHSSTIWALSFNAK-----GDKLVSCSDDLTIKIW 241
+ ++ H V+ IS + +SS A K G L+S S D TIK+W
Sbjct: 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL 301
++ L T+ G HD + V + G ADD + K+
Sbjct: 324 DV-----------STGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-- 369
Query: 302 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
K +K AH+ V S+ + + + S D +K+WE
Sbjct: 370 ------KRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE 408
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 19/280 (6%)
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
H V + P ++ +AS DAT +W+ GD+E TL+GH + V+ +S++ SG L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKL 164
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
LA+C D ++ +W+ FEC+ + GH +V V P D + S S D TIK+W
Sbjct: 165 LASCSADMTIKLWDF---QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW-- 219
Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
+ +CV+T + GH + + N G + SCS+D T+++W + +
Sbjct: 220 ---EVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSNDQTVRVWV--VATKECKA 270
Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID--GPSYKML 310
RH+ + + +S G + S+D I S M
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330
Query: 311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
L HD V V + G + +L S +DD +++W+ N
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKN 369
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 43/241 (17%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
V LE NE K + + G L G+ + W P ++ L GH V V
Sbjct: 65 VMELESKLNEAKE-EFTSGGPL----GQKRDPKEWIPRPPEKY----ALSGHRSPVTRVI 115
Query: 171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 230
+HP V+ S S D TIKVW E D + GH+ ++ +SF+ G L
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGD---------FERTLKGHTDSVQDISFDHSGKLLA 166
Query: 231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD 289
SCS D+TIK+W + + + T+ G HD + SV G I S + D
Sbjct: 167 SCSADMTIKLWD-----------FQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSASRDK 214
Query: 290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER-RLLASASDDGMIKIWEL 348
+++ + ++ G K H V V+ P + L+AS S+D +++W +
Sbjct: 215 TIKMW-----EVQTGYCVKTFT----GHREWVRMVR--PNQDGTLIASCSNDQTVRVWVV 263
Query: 349 A 349
A
Sbjct: 264 A 264
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 29 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 79
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 80 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 133
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 191 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 236
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 237 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 287
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 288 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 326
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 86
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 134
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 135 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 184
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 185 SYDGLCRIWDTAS 197
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 35 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 84
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 85 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 113
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 18 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 68
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 69 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 122
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 180 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 225
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 226 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 276
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 277 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 24 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 73
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 18 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 68
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 69 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 122
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 180 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 225
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 226 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 276
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 277 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 315
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 24 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 73
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 11 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 61
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 62 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 115
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 173 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 218
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 219 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 264
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 265 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 308
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 68
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 116
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 117 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 166
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 167 SYDGLCRIWDTAS 179
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 17 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 66
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 67 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 95
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 12 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 62
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 63 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 116
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 174 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 219
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 220 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 265
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 309
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 69
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 117
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 118 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 167
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 168 SYDGLCRIWDTAS 180
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 18 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 67
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 68 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 96
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 12 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 62
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 63 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 116
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 174 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 219
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 220 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 265
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 309
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 69
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 117
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 118 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 167
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 168 SYDGLCRIWDTAS 180
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 18 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 67
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 68 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 96
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 18 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 68
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 69 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 122
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 180 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 225
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 226 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 276
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 277 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 24 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 73
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 74 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 17 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 67
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 68 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 121
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 179 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 224
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 225 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 270
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 271 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 314
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 74
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 122
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 123 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 172
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 173 SYDGLCRIWDTAS 185
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 23 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 72
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 73 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 101
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 13 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 63
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 64 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 117
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 175 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 220
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 221 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 266
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 310
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 70
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 118
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 119 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 168
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 169 SYDGLCRIWDTAS 181
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 19 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 68
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 69 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 97
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 8 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 58
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 59 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 112
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 170 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 215
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 216 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 261
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 262 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 305
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 65
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 113
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 114 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 163
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 164 SYDGLCRIWDTAS 176
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 14 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 63
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 64 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 92
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 36 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 86
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 87 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 140
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 198 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 243
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 244 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 294
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 295 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 333
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 34/260 (13%)
Query: 91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 150
T S AT V +Y TL GH V SV ++ +G LA+ DK + IW G
Sbjct: 20 TPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 79
Query: 151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 210
+FE + GH + V W ++L S S D T+K+W D + C++T+
Sbjct: 80 -KFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL---- 127
Query: 211 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 270
GHS+ ++ +FN + + +VS S D +++IW +++G + L T+ + D
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-P 175
Query: 271 IFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 329
+ +VH++R+G +I S + D + + D G K L+ + + V+ V++SP
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPN 227
Query: 330 ERRLLASASDDGMIKIWELA 349
+ +LA A+ D +K+W+ +
Sbjct: 228 GKYILA-ATLDNTLKLWDYS 246
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 93
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 141
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 142 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 191
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 192 SYDGLCRIWDTAS 204
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 42 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 91
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 92 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 120
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 34 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 84
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 85 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 138
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 196 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 241
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 242 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 292
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 293 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 331
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 34/260 (13%)
Query: 91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 150
T S AT V +Y TL GH V SV ++ +G LA+ DK + IW G
Sbjct: 18 TPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 77
Query: 151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 210
+FE + GH + V W ++L S S D T+K+W D + C++T+
Sbjct: 78 -KFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL---- 125
Query: 211 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 270
GHS+ ++ +FN + + +VS S D +++IW +++G + L T+ + D
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-P 173
Query: 271 IFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 329
+ +VH++R+G +I S + D + + D G K L+ + + V+ V++SP
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPN 225
Query: 330 ERRLLASASDDGMIKIWELA 349
+ +LA A+ D +K+W+ +
Sbjct: 226 GKYILA-ATLDNTLKLWDYS 244
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 91
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 139
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 140 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 189
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 190 SYDGLCRIWDTAS 202
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 40 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 89
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 90 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 118
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P A+ S DK ++IW + +F +
Sbjct: 15 NYALKF--TLAGHTKAVSSVKFSPNG------EWLAASSADKLIKIW-GAYDGKFEKTIS 65
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 66 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 312
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 34/249 (13%)
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 161
E V +Y TL GH V SV ++ +G LA DK + IW G +FE + G
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFE--KTISG 66
Query: 162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 221
H + V W ++L S S D T+K+W D + C++T+ GHS+ ++ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 280
FN + + +VS S D +++IW +++G + L T+ + D + +VH++R+G
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 281 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 340
+I S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 341 GMIKIWELA 349
+K+W+ +
Sbjct: 217 NTLKLWDYS 225
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L + S D IK+W A D + +TIS GH I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 72
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 120
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 121 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 170
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 171 SYDGLCRIWDTAS 183
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +A+ +AD ++ + DG K + H +
Sbjct: 21 TLAG-HTKAVSSVKFSPNGEWLAASSADKLIKIW-----GAYDGKFEKTI----SGHKLG 70
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 71 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 54/346 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L + TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 15 NYAL--MFTLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 66 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G C+ L H+ V V ++ ++ S SYD
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
Y+ + L T +G+ +++ ++S G I SG+ D+ V + +++K+
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE---- 273
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
+++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 274 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 312
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 83 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 138 ---DVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
AS + L T+ + + V +S G I + D++++ + SK L
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC---------L 230
Query: 312 KKEKAHDMDVNSV--QWSPGERRLLASASDDGMIKIWEL 348
K H + + +S + + S S+D M+ IW L
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 211
+ + L GH + V V++ P + L S S D IK+W A D + +TIS
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS---- 65
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
GH I +++++ + LVS SDD T+KIW +S + L T+ G H +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYV 113
Query: 272 FSVHWS-REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 330
F +++ + +I SG+ D+SV+ + D+ G M LK AH V++V ++ +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIW-----DVKTG----MCLKTLPAHSDPVSAVHFN-RD 163
Query: 331 RRLLASASDDGMIKIWELAN 350
L+ S+S DG+ +IW+ A+
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS 183
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 15 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 66 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLYK 312
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 161
E V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + G
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISG 66
Query: 162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 221
H + V W ++L S S D T+K+W D + C++T+ GHS+ ++ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 280
FN + + +VS S D +++IW +++G + L T+ + D + +VH++R+G
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 281 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 340
+I S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 341 GMIKIWELA 349
+K+W+ +
Sbjct: 217 NTLKLWDYS 225
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 72
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 120
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 121 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 170
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 171 SYDGLCRIWDTAS 183
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 21 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 70
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 71 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L+ TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 15 NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 66 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D T+K+W
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLFK 312
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 161
E V +Y TL GH V SV ++ +G LA+ DK + IW G +FE + G
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISG 66
Query: 162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 221
H + V W ++L S S D T+K+W D + C++T+ GHS+ ++ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 280
FN + + +VS S D +++IW +++G + L T+ + D + +VH++R+G
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 281 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 340
+I S + D + + D G K L+ + + V+ V++SP + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 341 GMIKIWELA 349
+K+W+ +
Sbjct: 217 NTLKLWDYS 225
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + V V++ P + L S S D IK+W A D + +TIS GH I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 72
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
+++++ + LVS SDD T+KIW +S + L T+ G H +F +++
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 120
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
+ +I SG+ D+SV+ + D+ G K L AH V++V ++ + L+ S+
Sbjct: 121 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 170
Query: 338 SDDGMIKIWELAN 350
S DG+ +IW+ A+
Sbjct: 171 SYDGLCRIWDTAS 183
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 262 TISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 320
T++G H + + SV +S G +AS +AD ++ + DG K + H +
Sbjct: 21 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTI----SGHKLG 70
Query: 321 VNSVQWSPGERRLLASASDDGMIKIWELAN 350
++ V WS + LL SASDD +KIW++++
Sbjct: 71 ISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 158/345 (45%), Gaps = 52/345 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
NY L + TL GHT V S+ + P AS S DK ++IW + +F +
Sbjct: 15 NYAL--MFTLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N
Sbjct: 66 ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
L+ + D+SV IW+V G C+ L H+ V V ++ ++ S SYD
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
++W D+ + C++T+ + +N S + F+ G +++ + D +K+W
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNDLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
Y+ + L T +G+ +++ ++S G I SG+ D+ V +
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
K +++K + H V S P E ++ASA+ +D IK+W+
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 312
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
HT+ V S +SP+G+ LA++S D IW G +E T+ GH+ + V+W++ L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 83 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
D C++T+ HS + A+ FN G +VS S D +IW
Sbjct: 138 ---DVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
AS + L T+ + + V +S G I + D+ ++ + SK L
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC---------L 230
Query: 312 KKEKAHDMDVNSV--QWSPGERRLLASASDDGMIKIWEL 348
K H + + +S + + S S+D M+ IW L
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 211
+ + L GH + V V++ P + L S S D IK+W A D + +TIS
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS---- 65
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
GH I +++++ + LVS SDD T+KIW +S + L T+ G H +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYV 113
Query: 272 FSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 330
F +++ + +I SG+ D+SV+ + D+ G M LK AH V++V ++ +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIW-----DVKTG----MCLKTLPAHSDPVSAVHFN-RD 163
Query: 331 RRLLASASDDGMIKIWELAN 350
L+ S+S DG+ +IW+ A+
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS 183
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 161/341 (47%), Gaps = 60/341 (17%)
Query: 10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
EL+ + L+GH D V + + S S D T+++W S+ C L
Sbjct: 107 ELKSPKVLKGHDDHVITC-------LQFCGNRIVSGSDDNTLKVW----SAVTGKCLRTL 155
Query: 70 EEMHTRTVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
HT V WS + ++ + S D T +W G EC+ TL GH + V+ + +
Sbjct: 156 VG-HTGGV----WSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLH 208
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
+ + RD ++ +W++ G +C+ VL GH V+ VQ+ V S +YD +
Sbjct: 209 EKRVVSGS--RDATLRVWDIETG---QCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMV 261
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
KVW D + C+ T+ GH++ +++L F+ G +VS S D +I++W
Sbjct: 262 KVW-----DPETETCLHTL----QGHTNRVYSLQFD--GIHVVSGSLDTSIRVWD----- 305
Query: 248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSY 307
+++G+ + T++G+ T S ++ I+ SG AD +V+ + D+ G
Sbjct: 306 VETGNC------IHTLTGHQSLT--SGMELKDNILVSGNADSTVKIW-----DIKTGQCL 352
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ L K H V +Q++ + + ++SDDG +K+W+L
Sbjct: 353 QTLQGPNK-HQSAVTCLQFN---KNFVITSSDDGTVKLWDL 389
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+ TL+GHT+RV+SL + DG+ V S S D ++R+W+ NC L
Sbjct: 272 LHTLQGHTNRVYSLQF------DGIHVV--SGSLDTSIRVWDVETG----NCIHTLTGHQ 319
Query: 74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG---HENEVKSVSWNASG 130
+ T +L + + D+T IW+ G +C+ TL+G H++ V + +N +
Sbjct: 320 SLT---SGMELKDNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFNKN- 373
Query: 131 TLLATCGRDKSVWIWEVMPGNEFECVSVLQ 160
+ T D +V +W++ G + L+
Sbjct: 374 -FVITSSDDGTVKLWDLKTGEFIRNLVTLE 402
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 41/288 (14%)
Query: 83 SPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRD 139
+PS +L FD T + D G+ L GH+ E +SWN+ SG LL + D
Sbjct: 146 TPSSDVLV---FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDD 201
Query: 140 KSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAED 194
+V +W++ G + + ++ GH+ V+ V WH + LF S + D + +W D
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIW---D 258
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDG 253
T S+ S + H++ + LSFN + +++ S D T+ +W +++
Sbjct: 259 TRSN---TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---- 311
Query: 254 YASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFFVESK-------DDLIDG 304
L T + D IF VHWS E I+AS D + + SK +D DG
Sbjct: 312 ------LHTFESHKDE-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 352
P LL H ++ W+P E ++ S S+D +++IW++A +
Sbjct: 365 PP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 36/276 (13%)
Query: 92 ASFDATTCI--------WEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSV 142
A FDA+ C + V G EC + HE EV + ++AT V
Sbjct: 93 AQFDASHCDSDKGEFGGFGSVTGKIECEIKI-NHEGEVNRARYMPQNPHIIATKTPSSDV 151
Query: 143 WIWE-----VMPGNEFECVS--VLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAED 194
+++ P EC L+GH ++ + W+ + L S S D+T+ +W
Sbjct: 152 LVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA 211
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDG 253
+ + GHS+ + ++++ + L S +DD + IW + S
Sbjct: 212 GPKEG--KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTR-SNTTSKPS 268
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 313
+ H ++ S + E I+A+G+AD +V + D + K+ L
Sbjct: 269 HLVDAHTAEVN------CLSFNPYSEFILATGSADKTVALW--------DLRNLKLKLHT 314
Query: 314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
++H ++ V WSP +LAS+ D + +W+L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
++ HT V L++ P + + A+ S DKTV +W+ R K E H
Sbjct: 271 VDAHTAEVNCLSFNPYSEF-----ILATGSADKTVALWDL----RNLKLKLHTFESHKDE 321
Query: 77 VRSCAWSPSGK-LLATASFDATTCIWE--DVG----------GDYECVATLEGHENEVKS 123
+ WSP + +LA++ D +W+ +G G E + GH ++
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 124 VSWNASGT-LLATCGRDKSVWIWEV 147
SWN + ++ + D + IW++
Sbjct: 382 FSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIW-------EQSASS 60
N +L+ + T E H D ++ + W P + AS D+ + +W EQSA
Sbjct: 307 NLKLK-LHTFESHKDEIFQVHWSPHNET-----ILASSGTDRRLNVWDLSKIGEEQSAED 360
Query: 61 RFWNCKAVL--EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWE 102
+L HT + +W+P+ ++ + S D IW+
Sbjct: 361 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH V SLA G + S S DKT+ W+ + + + + H+
Sbjct: 12 TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V+ C + G +AS+D T +W+ G E GH+++V SV + +++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
RDK++ +W + + +C++ L GH V V+ P + S D +K
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
W N + Q I GH+S I L+ + G + S D I +W
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
A+ + + T+S + +FS+ +S + A ++ F L+D P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
K + H + S+ WS + L A +D+ +I++W++
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
W LA
Sbjct: 223 WNLA 226
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 26/188 (13%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM- 72
+ TL GH D V + P D + S DK V+ W N + +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN-------LNQFQIEADFI 193
Query: 73 -HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN---- 127
H + + SP G L+A+A D +W + + TL ++EV S++++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA--KKAMYTLSA-QDEVFSLAFSPNRY 250
Query: 128 ----ASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCS 182
A+ T + D + ++ P EF S + HA + W LF+
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAVSLA---WSADGQTLFAGY 305
Query: 183 YDNTIKVW 190
DN I+VW
Sbjct: 306 TDNVIRVW 313
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH + +L TA DG + AS D + +W +A + A E V
Sbjct: 194 GHNSNINTL----TASPDGT--LIASAGKDGEIMLWNLAAKKAMYTLSAQDE------VF 241
Query: 79 SCAWSPSGKLLATA--------SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
S A+SP+ LA A S D + +D+ ++ + + E S++W+A G
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLV-DDLRPEFAGYS--KAAEPHAVSLAWSADG 298
Query: 131 TLLATCGRDKSVWIWEVMPGN 151
L D + +W+VM N
Sbjct: 299 QTLFAGYTDNVIRVWQVMTAN 319
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH V SLA G + S S DKT+ W+ + + + + H+
Sbjct: 12 TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V+ C + G +AS+D T +W+ G E GH+++V SV + +++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
RDK++ +W + + +C++ L GH V V+ P + S D +K
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
W N + Q I GH+S I L+ + G + S D I +W
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
A+ + + T+S + +FS+ +S + A ++ F L+D P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
K + H + S+ WS + L A +D+ +I++W++
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
W LA
Sbjct: 223 WNLA 226
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 22/186 (11%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+ TL GH D V + P D + S DK V+ W + + +A H
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----FQIEADFIG-H 195
Query: 74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN------ 127
+ + SP G L+A+A D +W + + TL ++EV S++++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAA--KKAMYTLSA-QDEVFSLAFSPNRYWL 252
Query: 128 --ASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSYD 184
A+ T + D + ++ P EF S + HA + W LF+ D
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAVSLA---WSADGQTLFAGYTD 307
Query: 185 NTIKVW 190
N I+VW
Sbjct: 308 NVIRVW 313
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH + +L TA DG + AS D + +W +A + A E V
Sbjct: 194 GHNSNINTL----TASPDGT--LIASAGKDGEIMLWNLAAKKAMYTLSAQDE------VF 241
Query: 79 SCAWSPSGKLLATA--------SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
S A+SP+ LA A S D + +D+ ++ + + E S++W+A G
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLV-DDLRPEFAGYS--KAAEPHAVSLAWSADG 298
Query: 131 TLLATCGRDKSVWIWEVMPGN 151
L D + +W+VM N
Sbjct: 299 QTLFAGYTDNVIRVWQVMTAN 319
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH V SLA G + S S DKT+ W+ + + + + H+
Sbjct: 6 TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V+ C + G +AS+D T +W+ G E GH+++V SV + +++ +
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
RDK++ +W + + +C++ L GH V V+ P + S D +K
Sbjct: 119 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
W N + Q I GH+S I L+ + G + S D I +W
Sbjct: 175 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 217
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
A+ + + T+S + +FS+ +S + A ++ F L+D P +
Sbjct: 218 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
K + H + S+ WS + L A +D+ +I++W++
Sbjct: 273 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 309
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 66 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 116
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 117 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 157
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 216
Query: 346 WELA 349
W LA
Sbjct: 217 WNLA 220
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 22/186 (11%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+ TL GH D V + P D + S DK V+ W + + +A H
Sbjct: 135 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----FQIEADFIG-H 189
Query: 74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN------ 127
+ + SP G L+A+A D +W + + TL ++EV S++++
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAA--KKAMYTLSA-QDEVFSLAFSPNRYWL 246
Query: 128 --ASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSYD 184
A+ T + D + ++ P EF S + HA + W LF+ D
Sbjct: 247 AAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAVSLA---WSADGQTLFAGYTD 301
Query: 185 NTIKVW 190
N I+VW
Sbjct: 302 NVIRVW 307
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH + +L TA DG + AS D + +W +A + A E V
Sbjct: 188 GHNSNINTL----TASPDGT--LIASAGKDGEIMLWNLAAKKAMYTLSAQDE------VF 235
Query: 79 SCAWSPSGKLLATA--------SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
S A+SP+ LA A S D + +D+ ++ + + E S++W+A G
Sbjct: 236 SLAFSPNRYWLAAATATGIKVFSLDPQYLV-DDLRPEFAGYS--KAAEPHAVSLAWSADG 292
Query: 131 TLLATCGRDKSVWIWEVMPGN 151
L D + +W+VM N
Sbjct: 293 QTLFAGYTDNVIRVWQVMTAN 313
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 143/340 (42%), Gaps = 45/340 (13%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH V SLA G + S S DKT+ W+ + + + + H+
Sbjct: 12 TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V+ C + G +AS+D T +W+ G E GH+++V SV + +++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
RDK++ +W + + +C++ L GH V V+ P + S D +K
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
W N + Q I GH+S I L+ + G + S D I +W
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
A+ + + T+S + +FS+ +S + A ++ F L+D P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
K + H + S+ WS + L A +D+ +I++W+
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQ 314
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
W LA
Sbjct: 223 WNLA 226
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 26/188 (13%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM- 72
+ TL GH D V + P D + S DK V+ W N + +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN-------LNQFQIEADFI 193
Query: 73 -HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN---- 127
H + + SP G L+A+A D +W + + TL ++EV S++++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA--KKAMYTLSA-QDEVFSLAFSPNRY 250
Query: 128 ----ASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCS 182
A+ T + D + ++ P EF S + HA + W LF+
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAVSLA---WSADGQTLFAGY 305
Query: 183 YDNTIKVW 190
DN I+VW
Sbjct: 306 TDNVIRVW 313
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 41/288 (14%)
Query: 83 SPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRD 139
+PS +L FD T + D G+ L GH+ E +SWN+ SG LL + D
Sbjct: 146 TPSSDVLV---FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDD 201
Query: 140 KSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAED 194
+V +W++ G + + ++ GH+ V+ V WH + LF S + D + +W D
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIW---D 258
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDG 253
T S+ S + H++ + LSFN + +++ S D T+ +W +++
Sbjct: 259 TRSN---TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---- 311
Query: 254 YASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFFVESK-------DDLIDG 304
L T + D IF VHWS E I+AS D + + SK +D DG
Sbjct: 312 ------LHTFESHKDE-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 352
P LL H ++ W+P E ++ S S+D + +IW+ A +
Sbjct: 365 PP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 36/276 (13%)
Query: 92 ASFDATTCI--------WEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSV 142
A FDA+ C + V G EC + HE EV + ++AT V
Sbjct: 93 AQFDASHCDSDKGEFGGFGSVTGKIECEIKI-NHEGEVNRARYXPQNPHIIATKTPSSDV 151
Query: 143 WIWE-----VMPGNEFECVS--VLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAED 194
+++ P EC L+GH ++ + W+ + L S S D+T+ +W
Sbjct: 152 LVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA 211
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDG 253
+ + GHS+ + ++++ + L S +DD + IW + S
Sbjct: 212 GPKEG--KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTR-SNTTSKPS 268
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 313
+ H ++ S + E I+A+G+AD +V + D + K+ L
Sbjct: 269 HLVDAHTAEVN------CLSFNPYSEFILATGSADKTVALW--------DLRNLKLKLHT 314
Query: 314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
++H ++ V WSP +LAS+ D + +W+L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
++ HT V L++ P + + A+ S DKTV +W+ R K E H
Sbjct: 271 VDAHTAEVNCLSFNPYSEF-----ILATGSADKTVALWDL----RNLKLKLHTFESHKDE 321
Query: 77 VRSCAWSPSGK-LLATASFDATTCIWE--DVG----------GDYECVATLEGHENEVKS 123
+ WSP + +LA++ D +W+ +G G E + GH ++
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 124 VSWNASGT-LLATCGRDKSVWIWE 146
SWN + ++ + D IW+
Sbjct: 382 FSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIW-------EQSASS 60
N +L+ + T E H D ++ + W P + AS D+ + +W EQSA
Sbjct: 307 NLKLK-LHTFESHKDEIFQVHWSPHNET-----ILASSGTDRRLNVWDLSKIGEEQSAED 360
Query: 61 RFWNCKAVL--EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDY 108
+L HT + +W+P+ ++ + S D IW+ Y
Sbjct: 361 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENIY 411
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 103 DVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEV--MP--GNEFECV 156
D G+ L GH+ E +SWN SG LL + D ++ +W++ +P G +
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAK 220
Query: 157 SVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 215
++ GH V+ V WH + LF S + D + +W DT S+N S S + H++
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW---DTRSNN---TSKPSHSVDAHTA 274
Query: 216 TIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 274
+ LSFN + +++ S D T+ +W +++ L + + D IF V
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQV 323
Query: 275 HWS--REGIIASGAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 325
WS E I+AS D + + +S +D DGP LL H ++
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGP--PELLFIHGGHTAKISDFS 381
Query: 326 WSPGERRLLASASDDGMIKIWELANTL 352
W+P E ++ S S+D ++++W++A +
Sbjct: 382 WNPNEPWVICSVSEDNIMQVWQMAENI 408
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE--EM 72
+++ HT V L++ P + + A+ S DKTV +W+ N K L E
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEF-----ILATGSADKTVALWD------LRNLKLKLHSFES 315
Query: 73 HTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVG----------GDYECVATLEGHEN 119
H + WSP + +LA++ D +W+ +G G E + GH
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375
Query: 120 EVKSVSWNASGT-LLATCGRDKSVWIWEV 147
++ SWN + ++ + D + +W++
Sbjct: 376 KISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 45/341 (13%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH V SLA G + S S DKT+ W+ + + + + H+
Sbjct: 12 TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V+ C + G +AS+D T +W+ G E GH+++V SV + +++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
RDK++ +W + + +C++ L GH V V+ P + S D +K
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
W N + Q I GH+S I L+ + G + S D I +W
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
A+ + + T+S + +FS+ +S + A ++ F L+D P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ H + S+ WS + L A +D+ +I++W++
Sbjct: 279 AGYSAAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
DDSV D ++ + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
W LA
Sbjct: 223 WNLA 226
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 26/188 (13%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM- 72
+ TL GH D V + P D + S DK V+ W N + +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN-------LNQFQIEADFI 193
Query: 73 -HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN---- 127
H + + SP G L+A+A D +W + + TL ++EV S++++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA--KKAMYTLSA-QDEVFSLAFSPNRY 250
Query: 128 ----ASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCS 182
A+ T + D + ++ P EF S + HA + W LF+
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSAAAEPHAVSLA---WSADGQTLFAGY 305
Query: 183 YDNTIKVW 190
DN I+VW
Sbjct: 306 TDNVIRVW 313
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 23/141 (16%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH + +L TA DG + AS D + +W +A + A E V
Sbjct: 194 GHNSNINTL----TASPDGT--LIASAGKDGEIMLWNLAAKKAMYTLSAQDE------VF 241
Query: 79 SCAWSPSGKLLATA--------SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
S A+SP+ LA A S D + +D+ ++ + E S++W+A G
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLV-DDLRPEFAGYSA--AAEPHAVSLAWSADG 298
Query: 131 TLLATCGRDKSVWIWEVMPGN 151
L D + +W+VM N
Sbjct: 299 QTLFAGYTDNVIRVWQVMTAN 319
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 112/290 (38%), Gaps = 67/290 (23%)
Query: 20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRS 79
HTD V+ + DG ASC DKT+++++ + KA H V
Sbjct: 620 HTDAVYHACFSE----DGQR--IASCGADKTLQVFKAETGEKLLEIKA-----HEDEVLC 668
Query: 80 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG--TLLATCG 137
CA+S + +AT S D IW + G E V T + H +V + S LLAT
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTG--ELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 726
Query: 138 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA----- 192
D + +W++ N+ EC + + GH V ++ P +L SCS D T+K+W A
Sbjct: 727 SDCFLKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
Query: 193 -------------EDTDSD----------------------------NWHCVQTISESNN 211
ED D + H + E +
Sbjct: 784 RKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHT 843
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD--GYASWRH 259
GH STI F+ + V +++W D +R + D G+ SW H
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTD-SRSKVADCRGHLSWVH 892
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 16/182 (8%)
Query: 64 NCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS 123
N ++ HT V +S G+ +A+ D T +++ G E + ++ HE+EV
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEVLC 668
Query: 124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSC 181
+++ +ATC DK V IW M G E V H++ V + + +L +
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTG---ELVHTYDEHSEQVNCCHFTNSSHHLLLATG 725
Query: 182 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
S D +K+W D + C T+ GH++++ F+ L SCS D T+K+W
Sbjct: 726 SSDCFLKLW-----DLNQKECRNTMF----GHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Query: 242 GA 243
A
Sbjct: 777 DA 778
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 92/248 (37%), Gaps = 58/248 (23%)
Query: 42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK--LLATASFDATTC 99
A+CS DK V+IW + H+ V C ++ S LLAT S D
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHT-----YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
+W+ EC T+ GH N V ++ LLA+C D ++ +W+ NE + ++V
Sbjct: 733 LWD--LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVK 790
Query: 160 QGHAQDVKMVQWHPTMDVLFSC---SYDNT-IKVWWAEDTDSDNWHCVQTISESNNGHSS 215
Q + + M+V+ C S D I V + H + E + GH S
Sbjct: 791 QFF---LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHS 847
Query: 216 TIW-------------ALS-----------------------------FNAKGDKLVSCS 233
TI ALS F+ G ++ S
Sbjct: 848 TIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSS 907
Query: 234 DDLTIKIW 241
DD TI++W
Sbjct: 908 DDQTIRLW 915
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 88/434 (20%), Positives = 162/434 (37%), Gaps = 112/434 (25%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR---------FWNCK 66
T+ GHT+ V + P + ASCS D T+++W+ ++++ F N +
Sbjct: 744 TMFGHTNSVNHCRFSPDD------KLLASCSADGTLKLWDATSANERKSINVKQFFLNLE 797
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATAS------FDATT--CIWEDVGGDYEC-------- 110
E+M V+ C+WS G + A+ FD T + E G +
Sbjct: 798 DPQEDMEV-IVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSP 856
Query: 111 ------------------------VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 146
VA GH + V V ++ G+ T D+++ +WE
Sbjct: 857 QNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Query: 147 ------------------VMPGNEFECVSVLQGHAQDVKMV-----QWHPTMDVLFSCSY 183
V NE ++V H + ++++ Q + SC
Sbjct: 917 TKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLINGRTGQIDYLTEAQVSCCC 974
Query: 184 DNTIKVWWAEDTDSDNWHCVQTIS----ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 239
+ + A ++ ++ ++ +S H T+W + F A L+S SDD I+
Sbjct: 975 LSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQ 1034
Query: 240 IWGADIT---------------RMQSGDGYASWRHLCT------ISGYHDRTIFSVHWSR 278
+W + R+ SW T I+G ++ F H +
Sbjct: 1035 VWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD-FVCH--Q 1091
Query: 279 EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK--KEKAHDMDVNSVQWSPGERRLLAS 336
+++ + D+ +F S D S+ +LL + + H+ V +S + LLA+
Sbjct: 1092 GTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSV-DSTLLAT 1150
Query: 337 ASDDGMIKIWELAN 350
D+G I+IW ++N
Sbjct: 1151 GDDNGEIRIWNVSN 1164
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 34/171 (19%)
Query: 180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 239
SC D T++V+ AE + H + +F+ + +CS D +K
Sbjct: 638 SCGADKTLQVFKAETGEK---------LLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW---SREGIIASGAADDSVQFFVE 296
IW + +G+ ++ H + H+ S ++A+G++D ++ +
Sbjct: 689 IWNS-----MTGELVHTYDE-------HSEQVNCCHFTNSSHHLLLATGSSDCFLKLW-- 734
Query: 297 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
DL + H VN ++SP ++ LLAS S DG +K+W+
Sbjct: 735 ---DLNQKECRNTMF----GHTNSVNHCRFSPDDK-LLASCSADGTLKLWD 777
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 213 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 272
H+ ++ F+ G ++ SC D T++++ A+ + L I + D +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAE-----------TGEKLLEIKAHEDEVLC 668
Query: 273 SVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR 332
+ + IA+ + D V+ + +L+ +Y H VN ++
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTGELVH--TYD-------EHSEQVNCCHFTNSSHH 719
Query: 333 LL-ASASDDGMIKIWEL 348
LL A+ S D +K+W+L
Sbjct: 720 LLLATGSSDCFLKLWDL 736
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASGT 131
H TV SC S ++ S D T IW D+ + L GH V+ +++ T
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDL---LLPLHELRGHNGCVRCSAFSVDST 1146
Query: 132 LLATCGRDKSVWIWEVMPG 150
LLAT + + IW V G
Sbjct: 1147 LLATGDDNGEIRIWNVSNG 1165
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPSGKLLATASFDA 96
A F+S S DKT +IW ++ L E+ H VR A+S LLAT +
Sbjct: 1103 ATKFSSTSADKTAKIWS-------FDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNG 1155
Query: 97 TTCIWEDVGGD 107
IW G+
Sbjct: 1156 EIRIWNVSNGE 1166
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 142/341 (41%), Gaps = 45/341 (13%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH V SLA G + S S DKT+ W+ + + + + H+
Sbjct: 12 TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V+ C + G +AS+D T +W+ G E GH+++V SV + + + +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
RDK++ +W + + +C++ L GH V V+ P + S D +K
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
W N + Q I GH+S I L+ + G + S D I +W
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
A+ + T+S + +FS+ +S + A ++ F L+D P +
Sbjct: 224 ---NLAAKKAXYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
K + H + S+ WS + L A +D+ +I++W++
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
TLEGH V S++ +A LL + RDK++ W++ ++ V V +GH+ V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
S S+D T+++W D Q GH S + ++ + K +
Sbjct: 72 TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVXSVDIDKKASXI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
+S S D TIK+W + L T+ G++D W + + A
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
DDSV D + + + H+ ++N++ SP + L+ASA DG I +
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXL 222
Query: 346 WELA 349
W LA
Sbjct: 223 WNLA 226
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 26/188 (13%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM- 72
+ TL GH D V + P D + S DK V+ W N + +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN-------LNQFQIEADFI 193
Query: 73 -HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN---- 127
H + + SP G L+A+A D +W + TL ++EV S++++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA--KKAXYTLSA-QDEVFSLAFSPNRY 250
Query: 128 ----ASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCS 182
A+ T + D + ++ P EF S + HA + W LF+
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAVSLA---WSADGQTLFAGY 305
Query: 183 YDNTIKVW 190
DN I+VW
Sbjct: 306 TDNVIRVW 313
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
Q GH V S+ +D A S S DKT+++W C A L H
Sbjct: 101 QRFVGHKSDVXSV------DIDKKASXIISGSRDKTIKVWTIKG-----QCLATLLG-HN 148
Query: 75 RTVRSCAWSPSGK------LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
V P+ K + +A D W ++ A GH + + +++ +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN--LNQFQIEADFIGHNSNINTLTASP 206
Query: 129 SGTLLATCGRDKSVWIWEV 147
GTL+A+ G+D + +W +
Sbjct: 207 DGTLIASAGKDGEIXLWNL 225
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 23/141 (16%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH + +L TA DG + AS D + +W +A + A E V
Sbjct: 194 GHNSNINTL----TASPDGT--LIASAGKDGEIXLWNLAAKKAXYTLSAQDE------VF 241
Query: 79 SCAWSPSGKLLATA--------SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
S A+SP+ LA A S D + +D+ ++ + + E S++W+A G
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLV-DDLRPEFAGYS--KAAEPHAVSLAWSADG 298
Query: 131 TLLATCGRDKSVWIWEVMPGN 151
L D + +W+V N
Sbjct: 299 QTLFAGYTDNVIRVWQVXTAN 319
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 37/240 (15%)
Query: 12 REIQTLEGHTDRVWSLAWKP------TAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC 65
++I++++ W+LA+ P T G +F SG K E S +R
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----EYSLDTR---- 163
Query: 66 KAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
+ + S A+SP GK LA+ + D I++ G + + TLEGH ++S++
Sbjct: 164 --------GKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIRSLT 213
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
++ LL T D + I++V N L GHA V V + P D F S +
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPD-DTHFVSSSSD 269
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
W T + CV T + H +W + +N G K+VS DD I I+ I
Sbjct: 270 KSVKVWDVGTRT----CVHTFFD----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 321
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 46/250 (18%)
Query: 115 EGHENEVKSVSW------NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 168
+ H++ + SV+W N+ + + VW W + L+GH V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR---DERLDLQWSLEGHQLGVVS 85
Query: 169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
V T+ + S S D I++W D +N +++I + W L+F+
Sbjct: 86 VDISHTLPIAASSSLDAHIRLW-----DLENGKQIKSI----DAGPVDAWTLAFSPDSQY 136
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA 287
L + + + I+G ++SG S + I S+ +S +G +ASGA
Sbjct: 137 LATGTHVGKVNIFG-----VESGKKEYSLD-------TRGKFILSIAYSPDGKYLASGAI 184
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
D + F D+ G LL + H M + S+ +SP + +LL +ASDDG IKI++
Sbjct: 185 DGIINIF-----DIATGK----LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYD 234
Query: 348 -----LANTL 352
LA TL
Sbjct: 235 VQHANLAGTL 244
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 53/232 (22%)
Query: 70 EEMHTRTVRSCAWSPSGK----LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
E+ H + S AW + K + T S D +W+ + +LEGH+ V SV
Sbjct: 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD 87
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSV--------------------------- 158
+ + + A+ D + +W++ G + + +
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 147
Query: 159 ------------LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 206
L + + + + P L S + D I ++ D + T+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF-----DIATGKLLHTL 202
Query: 207 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG-DGYASW 257
GH+ I +L+F+ LV+ SDD IKI+ + G+ASW
Sbjct: 203 ----EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 307 YKMLLKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIWE 347
Y +L K+E+AHD + SV W ++ + + S D ++K+W+
Sbjct: 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK 64
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 67/294 (22%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
+ HTD V+ + DG ASC DKT+++++ + + KA H
Sbjct: 617 VVRPHTDAVYHACFSQ----DGQR--IASCGADKTLQVFKAETGEKLLDIKA-----HED 665
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLL 133
V CA+S +AT S D IW+ G + V T + H +V + ++ LL
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW--- 190
AT D + +W++ N+ EC + + GH V ++ P ++L SCS D T+++W
Sbjct: 724 ATGSNDFFLKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 191 --------------------------------WAEDTDSD-----------NWHCVQTIS 207
W+ D D + H ++
Sbjct: 781 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 840
Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD--GYASWRH 259
E + GH STI F+ V +++W D +R++ D G+ SW H
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID-SRLKVADCRGHLSWVH 893
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 64 NCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS 123
N ++ HT V +S G+ +A+ D T +++ G E + ++ HE+EV
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLC 669
Query: 124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSC 181
++++ + +ATC DK V IW+ G + V H++ V + + +L +
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATG 726
Query: 182 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
S D +K+W D + C T+ GH++++ F+ + L SCS D T+++W
Sbjct: 727 SNDFFLKLW-----DLNQKECRNTMF----GHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/442 (20%), Positives = 161/442 (36%), Gaps = 128/442 (28%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--------RFW---- 63
T+ GHT+ V + P + ASCS D T+R+W+ +++ RF+
Sbjct: 745 TMFGHTNSVNHCRFSPDD------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 798
Query: 64 -----------------------------------NCKAVLEEMHT---RTVRSCAWSPS 85
+ +L E+HT T++ C +SP
Sbjct: 799 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 145
L A +W ++ + VA GH + V V ++ G+ T D+++ +W
Sbjct: 859 DHLAVIALSQYCVELW-NIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Query: 146 E------------------VMPGNEFECVSV-----LQGHAQDVKMVQWHPTMDVLFSCS 182
E V NE ++V LQ A + + P V C
Sbjct: 917 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 976
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNN-------GHSSTIWALSFNAKGDKLVSCSDD 235
+ V + ++ + ++ I NN GH + + F A G L+S S+D
Sbjct: 977 SPHLEYVAFGDEDGA-----IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1031
Query: 236 LTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSREG------------ 280
I++W Q+GD H T+ + D + S WS +G
Sbjct: 1032 SVIQVWN-----WQTGDYVFLQAHQETVKDFRLLQDSRLLS--WSFDGTVKVWNVITGRI 1084
Query: 281 ----------IIASGAADDSVQFFVESKDDLIDGPSYKML--LKKEKAHDMDVNSVQWSP 328
+++ + D+ +F S D S+ +L L + K H+ V +S
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1144
Query: 329 GERRLLASASDDGMIKIWELAN 350
+ LLA+ D+G I+IW +++
Sbjct: 1145 -DGILLATGDDNGEIRIWNVSD 1165
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI 100
+ A+ S D +++W+ + C+ + HT +V C +SP +LLA+ S D T +
Sbjct: 722 LLATGSNDFFLKLWDLNQK----ECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 101 WEDVGGDYECVATL-----------EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 149
W+ + + E E VK SW+A G + ++K V ++++
Sbjct: 777 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHT 835
Query: 150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 209
+ GH ++ + P D L + W D+ C
Sbjct: 836 SGLL--AEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADC------- 885
Query: 210 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
GH S + + F+ G ++ SDD TI++W
Sbjct: 886 -RGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 46 SGDKTVRIWE--QSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE- 102
S D TV++W R + C H TV SCA S ++ S D T IW
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTC-------HQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Query: 103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 151
D+ + L+GH V+ +++ G LLAT + + IW V G
Sbjct: 1122 DL---LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 239
SC D T++V+ AE + H + +F++ + +CS D +K
Sbjct: 639 SCGADKTLQVFKAETGEK---------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 240 IWGADITRM-QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 298
IW + ++ + D ++ + C + S ++A+G+ D FF++
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNK----------SNHLLLATGSND----FFLKLW 735
Query: 299 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
D + K H VN ++SP + LLAS S DG +++W++
Sbjct: 736 D-----LNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDV 779
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 67/294 (22%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
+ HTD V+ + DG ASC DKT+++++ + + KA H
Sbjct: 610 VVRPHTDAVYHACFSQ----DGQR--IASCGADKTLQVFKAETGEKLLDIKA-----HED 658
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLL 133
V CA+S +AT S D IW+ G + V T + H +V + ++ LL
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW--- 190
AT D + +W++ N+ EC + + GH V ++ P ++L SCS D T+++W
Sbjct: 717 ATGSNDFFLKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 191 --------------------------------WAEDTDSD-----------NWHCVQTIS 207
W+ D D + H ++
Sbjct: 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833
Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD--GYASWRH 259
E + GH STI F+ V +++W D +R++ D G+ SW H
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID-SRLKVADCRGHLSWVH 886
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 64 NCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS 123
N ++ HT V +S G+ +A+ D T +++ G E + ++ HE+EV
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLC 662
Query: 124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSC 181
++++ + +ATC DK V IW+ G + V H++ V + + +L +
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATG 719
Query: 182 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
S D +K+W D + C T+ GH++++ F+ + L SCS D T+++W
Sbjct: 720 SNDFFLKLW-----DLNQKECRNTMF----GHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/442 (20%), Positives = 161/442 (36%), Gaps = 128/442 (28%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--------RFW---- 63
T+ GHT+ V + P + ASCS D T+R+W+ +++ RF+
Sbjct: 738 TMFGHTNSVNHCRFSPDD------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791
Query: 64 -----------------------------------NCKAVLEEMHT---RTVRSCAWSPS 85
+ +L E+HT T++ C +SP
Sbjct: 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 145
L A +W ++ + VA GH + V V ++ G+ T D+++ +W
Sbjct: 852 DHLAVIALSQYCVELW-NIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Query: 146 E------------------VMPGNEFECVSV-----LQGHAQDVKMVQWHPTMDVLFSCS 182
E V NE ++V LQ A + + P V C
Sbjct: 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNN-------GHSSTIWALSFNAKGDKLVSCSDD 235
+ V + ++ + ++ I NN GH + + F A G L+S S+D
Sbjct: 970 SPHLEYVAFGDEDGA-----IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1024
Query: 236 LTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSREG------------ 280
I++W Q+GD H T+ + D + S WS +G
Sbjct: 1025 SVIQVWN-----WQTGDYVFLQAHQETVKDFRLLQDSRLLS--WSFDGTVKVWNVITGRI 1077
Query: 281 ----------IIASGAADDSVQFFVESKDDLIDGPSYKML--LKKEKAHDMDVNSVQWSP 328
+++ + D+ +F S D S+ +L L + K H+ V +S
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1137
Query: 329 GERRLLASASDDGMIKIWELAN 350
+ LLA+ D+G I+IW +++
Sbjct: 1138 -DGILLATGDDNGEIRIWNVSD 1158
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI 100
+ A+ S D +++W+ + C+ + HT +V C +SP +LLA+ S D T +
Sbjct: 715 LLATGSNDFFLKLWDLNQK----ECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 101 WEDVGGDYECVATL-----------EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 149
W+ + + E E VK SW+A G + ++K V ++++
Sbjct: 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHT 828
Query: 150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 209
+ GH ++ + P D L + W D+ C
Sbjct: 829 SGLL--AEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADC------- 878
Query: 210 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
GH S + + F+ G ++ SDD TI++W
Sbjct: 879 -RGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 46 SGDKTVRIWE--QSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE- 102
S D TV++W R + C H TV SCA S ++ S D T IW
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTC-------HQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Query: 103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 151
D+ + L+GH V+ +++ G LLAT + + IW V G
Sbjct: 1115 DL---LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 239
SC D T++V+ AE + H + +F++ + +CS D +K
Sbjct: 632 SCGADKTLQVFKAETGEK---------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 240 IWGADITRM-QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 298
IW + ++ + D ++ + C + S ++A+G+ D FF++
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNK----------SNHLLLATGSND----FFLKLW 728
Query: 299 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
D + K H VN ++SP + LLAS S DG +++W++
Sbjct: 729 D-----LNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDV 772
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 114 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 168
L GH+ E +SWN + L + D ++ +W++ P + ++ GH V+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 169 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 227
V WH + LF S + D + +W DT ++N S + + H++ + LSFN +
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 228 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 284
+++ S D T+ +W +++ L + + D IF V WS E I+AS
Sbjct: 295 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 343
Query: 285 GAADDSVQFFVESK-------DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
D + + SK +D DGP LL H ++ W+P E ++ S
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 401
Query: 338 SDDGMIKIWELANTL 352
S+D ++++W++A +
Sbjct: 402 SEDNIMQVWQMAENV 416
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 115 EGHENEVKSVSWNASGTLLATCGRDKSVWIW-----EVMPGNEFECVSVLQGHAQDVKMV 169
EG N + + NA T D V+ + + P E + L+GH ++ +
Sbjct: 132 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 191
Query: 170 QWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
W+P ++ L S S D+TI +W T + H V GH++ + ++++ +
Sbjct: 192 SWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 229 LV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 287
L S +DD + IW S + H ++ S + E I+A+G+A
Sbjct: 250 LFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVN------CLSFNPYSEFILATGSA 302
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
D +V + D + K+ L ++H ++ VQWSP +LAS+ D + +W+
Sbjct: 303 DKTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Query: 348 LA 349
L+
Sbjct: 355 LS 356
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE--EM 72
T++ HT V L++ P + + A+ S DKTV +W+ N K L E
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEF-----ILATGSADKTVALWD------LRNLKLKLHSFES 323
Query: 73 HTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVG----------GDYECVATLEGHEN 119
H + WSP + +LA++ D +W+ +G G E + GH
Sbjct: 324 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Query: 120 EVKSVSWNASGT-LLATCGRDKSVWIWEV 147
++ SWN + ++ + D + +W++
Sbjct: 384 KISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 114 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 168
L GH+ E +SWN + L + D ++ +W++ P + ++ GH V+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 169 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 227
V WH + LF S + D + +W DT ++N S + + H++ + LSFN +
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 228 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 284
+++ S D T+ +W +++ L + + D IF V WS E I+AS
Sbjct: 291 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 339
Query: 285 GAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
D + + +S +D DGP LL H ++ W+P E ++ S
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 397
Query: 338 SDDGMIKIWELANTL 352
S+D ++++W++A +
Sbjct: 398 SEDNIMQVWQMAENV 412
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 115 EGHENEVKSVSWNASGTLLATCGRDKSVWIW-----EVMPGNEFECVSVLQGHAQDVKMV 169
EG N + + NA T D V+ + + P E + L+GH ++ +
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187
Query: 170 QWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
W+P ++ L S S D+TI +W T + H V GH++ + ++++ +
Sbjct: 188 SWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 229 LV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 287
L S +DD + IW S + H ++ S + E I+A+G+A
Sbjct: 246 LFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVN------CLSFNPYSEFILATGSA 298
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
D +V + D + K+ L ++H ++ VQWSP +LAS+ D + +W+
Sbjct: 299 DKTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Query: 348 LA 349
L+
Sbjct: 351 LS 352
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 21/233 (9%)
Query: 73 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYE-----CVATLEGHENEVKSVSW 126
H + +W+P+ L +AS D T C+W+ E GH V+ V+W
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 127 N-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYD 184
+ +L + D+ + IW+ N + + H +V + ++P + +L + S D
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWG- 242
T+ +W + ++ S H I+ + ++ + +++ S D + +W
Sbjct: 300 KTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 243 ADITRMQSG-DGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQ 292
+ I QS D L I G H I W+ II S + D+ +Q
Sbjct: 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE--EM 72
T++ HT V L++ P + + A+ S DKTV +W+ N K L E
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEF-----ILATGSADKTVALWD------LRNLKLKLHSFES 319
Query: 73 HTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVG----------GDYECVATLEGHEN 119
H + WSP + +LA++ D +W+ +G G E + GH
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Query: 120 EVKSVSWNASGT-LLATCGRDKSVWIWEV 147
++ SWN + ++ + D + +W++
Sbjct: 380 KISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 114 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 168
L GH+ E +SWN + L + D ++ +W++ P + ++ GH V+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 169 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 227
V WH + LF S + D + +W DT ++N S + + H++ + LSFN +
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 228 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 284
+++ S D T+ +W +++ L + + D IF V WS E I+AS
Sbjct: 293 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 341
Query: 285 GAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
D + + +S +D DGP LL H ++ W+P E ++ S
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 399
Query: 338 SDDGMIKIWELANTL 352
S+D ++++W++A +
Sbjct: 400 SEDNIMQVWQMAENV 414
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 115 EGHENEVKSVSWNASGTLLATCGRDKSVWIW-----EVMPGNEFECVSVLQGHAQDVKMV 169
EG N + + NA T D V+ + + P E + L+GH ++ +
Sbjct: 130 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 189
Query: 170 QWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
W+P ++ L S S D+TI +W T + H V GH++ + ++++ +
Sbjct: 190 SWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 229 LV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 287
L S +DD + IW S + H ++ S + E I+A+G+A
Sbjct: 248 LFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVN------CLSFNPYSEFILATGSA 300
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
D +V + D + K+ L ++H ++ VQWSP +LAS+ D + +W+
Sbjct: 301 DKTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Query: 348 LA 349
L+
Sbjct: 353 LS 354
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 21/233 (9%)
Query: 73 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYE-----CVATLEGHENEVKSVSW 126
H + +W+P+ L +AS D T C+W+ E GH V+ V+W
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 241
Query: 127 N-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYD 184
+ +L + D+ + IW+ N + + H +V + ++P + +L + S D
Sbjct: 242 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWG- 242
T+ +W + ++ S H I+ + ++ + +++ S D + +W
Sbjct: 302 KTVALW--------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 243 ADITRMQSG-DGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQ 292
+ I QS D L I G H I W+ II S + D+ +Q
Sbjct: 354 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE--EM 72
T++ HT V L++ P + + A+ S DKTV +W+ N K L E
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEF-----ILATGSADKTVALWD------LRNLKLKLHSFES 321
Query: 73 HTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVG----------GDYECVATLEGHEN 119
H + WSP + +LA++ D +W+ +G G E + GH
Sbjct: 322 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Query: 120 EVKSVSWNASGT-LLATCGRDKSVWIWEV 147
++ SWN + ++ + D + +W++
Sbjct: 382 KISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 60/350 (17%)
Query: 7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
G + L+ I + V+ L + V G+ D T++IW+++ CK
Sbjct: 119 GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLR--------DNTIKIWDKNT----LECK 166
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW 126
+L HT +V + +++ T S D+T +W+ G E + TL H V + +
Sbjct: 167 RILTG-HTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRF 221
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
N ++ TC +D+S+ +W++ + VL GH V +V + + S S D T
Sbjct: 222 N--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRT 277
Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGAD- 244
IKVW ++ V+T+ NGH I L + D+L VS S D TI++W +
Sbjct: 278 IKVW-----NTSTCEFVRTL----NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC 325
Query: 245 --ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQF--FVESKDD 300
R+ G H+ + + + + I+ SGA D ++ V + D
Sbjct: 326 GACLRVLEG---------------HEELVRCIRFDNKRIV-SGAYDGKIKVWDLVAALDP 369
Query: 301 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
P+ + L+ H V +Q+ + + S+S D I IW+ N
Sbjct: 370 --RAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDFLN 414
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 148/325 (45%), Gaps = 54/325 (16%)
Query: 36 DGVAPV--FASCSGDKTVRIWEQSASSRFWNC-KAVLEEMHTRTVRS----CAWSPSGKL 88
DG AP F K ++ E S+ W C + L+ +H R+ S C K+
Sbjct: 89 DGNAPPNSFYRALYPKIIQDIETIESN--WRCGRHSLQRIHCRSETSKGVYCLQYDDQKI 146
Query: 89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 148
++ D T IW+ EC L GH V + ++ ++ T D +V +W+V
Sbjct: 147 VSGLR-DNTIKIWDK--NTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVN 201
Query: 149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-WAEDTDSDNWHCVQTIS 207
G E ++ L H + V ++++ M + +CS D +I VW A TD T+
Sbjct: 202 TG---EMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDI-------TLR 249
Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 267
GH + + + F+ K +VS S D TIK+W ++ + T++G H
Sbjct: 250 RVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNT-----------STCEFVRTLNG-H 295
Query: 268 DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 327
R I + + R+ ++ SG++D++++ + D+ G ++L + H+ V +++
Sbjct: 296 KRGIACLQY-RDRLVVSGSSDNTIRLW-----DIECGACLRVL----EGHEELVRCIRF- 344
Query: 328 PGERRLLASASDDGMIKIWELANTL 352
+ + + S + DG IK+W+L L
Sbjct: 345 --DNKRIVSGAYDGKIKVWDLVAAL 367
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14 IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
I TL GH VW + W P G + ASCS D V IW++ W+ AV +
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVLIWKEENGR--WSQIAV-HAV 97
Query: 73 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
H+ +V S W+P G LL AS D + E ++ H V S SW A
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
T+ T G D V IW+ + S L+GH+ V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
L S S D T + W +D + W E +W S++ G+ L
Sbjct: 217 LLRSYLASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
D + +W ++
Sbjct: 273 GGDNKVTLWKENL 285
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
V+ H + GK LAT S D T I+E G ++ + TL GHE V V W
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 128 AS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSY 183
GT+LA+C D V IW+ G + ++V H+ V VQW P +L S
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 184 DNTIKV 189
D + V
Sbjct: 122 DGKVSV 127
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH+D V +AW PT + AS S D+T IW Q W + EE
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSY---LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 76 TVRSCAWSPSGKLLATASFDATTCIW-EDVGGDYE 109
+ +WS SG +LA + D +W E++ G +E
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 106/285 (37%), Gaps = 35/285 (12%)
Query: 33 AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPS--GKL 88
A +D A+CS DKT++I+E + +++ + H V W+ G +
Sbjct: 15 AVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWE 146
LA+ S+D IW++ G + +A H V SV W + G LL D V + E
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPTM-------------DVLFSCSYDNTIKVWWAE 193
+ ++ HA V W P + DN +K+ W
Sbjct: 130 FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI-WKY 187
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
++D+ + T+ ++ W+ + + L S S D T IW D +
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQD-------NE 239
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 297
W+ ++ WS G ++A D+ V + E+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
V H + + G LATC DK++ I+EV G + + L GH V V
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 171 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
W HP +L SCSYD + +W E+ W + + + +S WA + G
Sbjct: 61 WAHPKFGTILASCSYDGKVLIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPL 115
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
L+ S D + + + ++G I H + S W+ I G
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
+S +F D+L+ D +Y +L + H V V WSP R LAS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 337 ASDDGMIKIWELAN 350
S D IW N
Sbjct: 225 VSQDRTCIIWTQDN 238
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 8 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
NY E + E H D + S+A PT P S S D TV++W W
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK------PYVLSGSDDLTVKLWN-------WENN 129
Query: 67 AVLE---EMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
LE E H V A++P A+ D T +W +G G E V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-LGQSTPNFTLTTGQERGVN 188
Query: 123 SVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
V + + T D ++ IW+ + CV+ L+GH +V +HPT+ ++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 181 CSYDNTIKVW 190
S D T+K+W
Sbjct: 246 GSEDGTLKIW 255
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
S D +R++ + K V E H +RS A P+ + + S D T +W +
Sbjct: 74 SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
++ T EGHE+ V V++N + A+ D++V +W + G ++ G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
V V ++P D + + S D TIK+W D CV T+ GH S + F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
+ ++S S+D T+KIW + +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 213 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 272
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFVM 144
Query: 273 SVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-G 329
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPLP 196
Query: 330 ERRLLASASDDGMIKIWE 347
++ + +ASDD IKIW+
Sbjct: 197 DKPYMITASDDLTIKIWD 214
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 42/261 (16%)
Query: 1 MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS 60
+E + G +I+ +EG + + G DGV ++ E S+
Sbjct: 38 VERIHGGGINTLDIEPVEGR--------YMLSGGSDGVIVLYD----------LENSSRQ 79
Query: 61 RFWNCKAVL------EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVAT 113
++ CKAV ++H +V + W P + ++SFD T +W+ + A
Sbjct: 80 SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT---NTLQTAD 136
Query: 114 LEGHENEVKSVSWNASGT---LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
+ E V S + T L+A R V + ++ G+ C +LQGH Q++ V
Sbjct: 137 VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS---CSHILQGHRQEILAVS 193
Query: 171 WHPTMD-VLFSCSYDNTIKVWWAEDT-------DSDNWHCVQTISESNNGHSSTIWALSF 222
W P D +L + S D+ +K+W D N Q + +N H+ + L F
Sbjct: 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253
Query: 223 NAKGDKLVSCSDDLTIKIWGA 243
+ G L++ D +++W +
Sbjct: 254 TSDGLHLLTVGTDNRMRLWNS 274
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS----REGIIAS 284
S S D T+K+W D +Q+ D + + T++S H S + ++A
Sbjct: 115 FTSSSFDKTLKVW--DTNTLQTADVFN-----------FEETVYSHHMSPVSTKHCLVAV 161
Query: 285 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 344
G VQ DL G +L + H ++ +V WSP +LA+AS D +K
Sbjct: 162 GTRGPKVQLC-----DLKSGSCSHIL----QGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 345 IWEL 348
+W++
Sbjct: 213 LWDV 216
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE----- 71
L+GH + +++W P + A+ S D V++W+ +S C L++
Sbjct: 182 LQGHRQEILAVSWSPRYDY-----ILATASADSRVKLWDVRRAS---GCLITLDQHNGKK 233
Query: 72 ---------MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
H V ++ G L T D +W G+ V + N K
Sbjct: 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293
Query: 123 SVSWNAS---GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF 179
+ + S + ++ ++ V G E +++L+GH + V + L+
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELY 350
Query: 180 SCSYDNTIKVW 190
S S D I W
Sbjct: 351 SGSRDCNILAW 361
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 316 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 352
H V +VQW P + + S+S D +K+W+ NTL
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD-TNTL 132
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 8 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
NY E + E H D + S+A PT P S S D TV++W W
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK------PYVLSGSDDLTVKLWN-------WENN 129
Query: 67 AVLE---EMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
LE E H V A++P A+ D T +W +G G E V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-LGQSTPNFTLTTGQERGVN 188
Query: 123 SVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
V + + T D ++ IW+ + CV+ L+GH +V +HPT+ ++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 181 CSYDNTIKVW 190
S D T+K+W
Sbjct: 246 GSEDGTLKIW 255
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
S D +R++ + K V E H +RS A P+ + + S D T +W +
Sbjct: 74 SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
++ T EGHE+ V V++N + A+ D++V +W + G ++ G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
V V ++P D + + S D TIK+W D CV T+ GH S + F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
+ ++S S+D T+KIW + +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFV 143
Query: 272 FSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 328
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPL 195
Query: 329 GERRLLASASDDGMIKIWE 347
++ + +ASDD IKIW+
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14 IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
I TL GH VW + W P G + ASCS D V IW++ W+ AV +
Sbjct: 48 IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVLIWKEENGR--WSQIAV-HAV 99
Query: 73 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
H+ +V S W+P G LL AS D + E ++ H V S SW A
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 158
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
T+ T G D V IW+ + S L+GH+ V+ V W PT+
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
L S S D T + W +D + W E +W S++ G+ L
Sbjct: 219 LLRSYLASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 274
Query: 233 SDDLTIKIWGADI 245
D + +W ++
Sbjct: 275 GGDNKVTLWKENL 287
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
V+ H + GK LAT S D T I+E G ++ + TL GHE V V W
Sbjct: 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64
Query: 128 AS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSY 183
GT+LA+C D V IW+ G + ++V H+ V VQW P +L S
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123
Query: 184 DNTIKV 189
D + V
Sbjct: 124 DGKVSV 129
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH+D V +AW PT + AS S D+T IW Q W + EE
Sbjct: 201 TLEGHSDWVRDVAWSPTVLLRSY---LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 257
Query: 76 TVRSCAWSPSGKLLATASFDATTCIW-EDVGGDYE 109
+ +WS SG +LA + D +W E++ G +E
Sbjct: 258 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
V H + + G LATC DK++ I+EV G + + L GH V V
Sbjct: 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 62
Query: 171 W-HPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
W HP +L SCSYD + +W E+ W + + + +S WA + G
Sbjct: 63 WAHPKFGTILASCSYDGKVLIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPL 117
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
L+ S D + + + ++G I H + S W+ I G
Sbjct: 118 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 167
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
+S +F D+L+ D +Y +L + H V V WSP R LAS
Sbjct: 168 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 337 ASDDGMIKIWELAN 350
S D IW N
Sbjct: 227 VSQDRTCIIWTQDN 240
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 106/285 (37%), Gaps = 35/285 (12%)
Query: 33 AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPS--GKL 88
A +D A+CS DKT++I+E + +++ + H V W+ G +
Sbjct: 17 AVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTI 71
Query: 89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWE 146
LA+ S+D IW++ G + +A H V SV W + G LL D V + E
Sbjct: 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPTM-------------DVLFSCSYDNTIKVWWAE 193
+ ++ HA V W P + DN +K+ W
Sbjct: 132 FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI-WKY 189
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
++D+ + T+ ++ W+ + + L S S D T IW D +
Sbjct: 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQD-------NE 241
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 297
W+ ++ WS G ++A D+ V + E+
Sbjct: 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14 IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
I TL GH VW + W P G + ASCS D V IW++ W+ AV +
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVLIWKEENGR--WSQIAV-HAV 97
Query: 73 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
H+ +V S W+P G LL AS D + E ++ H V S SW A
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
T+ T G D V IW+ + S L+GH+ V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
L S S D T + W +D + W E +W S++ G+ L
Sbjct: 217 LLRSYLASVSQDRTC-IIWTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
D + +W ++
Sbjct: 273 GGDNKVTLWKENL 285
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW 126
V+ H + GK LAT S D T I+E G ++ + TL GHE V V W
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 127 NAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 173
GT+LA+C D V IW+ G + ++V H+ V VQW P
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAP 109
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH+D V +AW PT + AS S D+T IW Q W + EE
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSY---LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 76 TVRSCAWSPSGKLLATASFDATTCIW-EDVGGDYE 109
+ +WS SG +LA + D +W E++ G +E
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
V H + + G LATC DK++ I+EV G + + L GH V V
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 171 W-HPTM-DVLFSCSYDNTIKVWWAED 194
W HP +L SCSYD + +W E+
Sbjct: 61 WAHPKFGTILASCSYDGKVLIWKEEN 86
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 27/231 (11%)
Query: 33 AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWS-PS-GKL 88
A +D A+CS DKT++I+E + +++ + H V W+ P G +
Sbjct: 15 AVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWE 146
LA+ S+D IW++ G + +A H V SV W + G LL D V + E
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPTM-------------DVLFSCSYDNTIKVWWAE 193
+ ++ HA V W P + DN +K+ W
Sbjct: 130 FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI-WKY 187
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
++D+ + T+ ++ W+ + + L S S D T IW D
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQD 237
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 60/274 (21%)
Query: 121 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
++SV ++ G LAT D+ + IW++ + V +LQGH QD+ + + P+ D L S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDI---ENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 181 CSYDNTIKVW-----------WAEDT--------------------------DSDNWHCV 203
S D T+++W ED DS+ V
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 204 QTI---SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 260
+ + +ES GH +++++ F G +VS S D ++K+W +S D
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-DSKTPNSGT 301
Query: 261 CTIS--GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD 318
C ++ G+ D + + I SG+ D V F+ D G ML + H
Sbjct: 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSGNPLLML----QGHR 352
Query: 319 MDVNSVQWSPG-----ERRLLASASDDGMIKIWE 347
V SV + G E + A+ S D +IW+
Sbjct: 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 75/194 (38%), Gaps = 31/194 (15%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+ L+GH ++SL + P+ S SGD+TVRIW+ R C L
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDK------LVSGSGDRTVRIWDL----RTGQCSLTLSIED 207
Query: 74 TRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLE-------GHENEVKSVS 125
V + A SP GK +A S D +W+ G V L+ GH++ V SV
Sbjct: 208 --GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG--FLVERLDSENESGTGHKDSVYSVV 263
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFE---------CVSVLQGHAQDVKMVQWHPTMD 176
+ G + + D+SV +W + N C GH V V +
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 177 VLFSCSYDNTIKVW 190
+ S S D + W
Sbjct: 324 YILSGSKDRGVLFW 337
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14 IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
I TL GH VW + W P G + ASCS D V IW++ W+ AV +
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVMIWKEENGR--WSQIAV-HAV 97
Query: 73 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
H+ +V S W+P G +L AS D + E ++ H V S SW A
Sbjct: 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
T+ T G D V IW+ + S L+GH+ V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
+ S S D T + W +D + W E +W S++ G+ L
Sbjct: 217 LLRSYMASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
D + +W ++
Sbjct: 273 GGDNKVTLWKENL 285
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
V+ H + GK +AT S D T I+E G ++ + TL GHE V V W
Sbjct: 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 128 AS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSY 183
GT+LA+C D V IW+ G + ++V H+ V VQW P +L S
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 184 DNTIKV 189
D + V
Sbjct: 122 DGKVSV 127
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH+D V +AW PT + AS S D+T IW Q W + EE
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSY---MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 76 TVRSCAWSPSGKLLATASFDATTCIW-EDVGGDYE 109
+ +WS SG +LA + D +W E++ G +E
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
V H + + G +ATC DK++ I+EV G + + L GH V V
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 171 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
W HP +L SCSYD + +W E+ W + + + +S WA + G
Sbjct: 61 WAHPKFGTILASCSYDGKVMIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPM 115
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
L+ S D + + + ++G I H + S W+ I G
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
+S +F D+L+ D +Y +L + H V V WSP R +AS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 337 ASDDGMIKIWELAN 350
S D IW N
Sbjct: 225 VSQDRTCIIWTQDN 238
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 106/285 (37%), Gaps = 35/285 (12%)
Query: 33 AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPS--GKL 88
A +D A+CS DKT++I+E + +++ + H V W+ G +
Sbjct: 15 AVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWE 146
LA+ S+D IW++ G + +A H V SV W + G +L D V + E
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPTM-------------DVLFSCSYDNTIKVWWAE 193
+ ++ HA V W P + DN +K+ W
Sbjct: 130 FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI-WKY 187
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
++D+ + T+ ++ W+ + + + S S D T IW D +
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYMASVSQDRTCIIWTQD-------NE 239
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 297
W+ ++ WS G ++A D+ V + E+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
S D +R++ + K V E H +RS A P+ + + S D T +W +
Sbjct: 74 SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
++ T EGHE+ V V++N + A+ D++V +W + G ++ G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
V V ++P D + + S D TIK+W D CV T+ GH S + F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
+ ++S S+D T+KIW + +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 8 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
NY E + E H D + S+A PT P S S D TV++W W
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK------PYVLSGSDDLTVKLWN-------WENN 129
Query: 67 AVLE---EMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
LE E H V A++P A+ D T +W +G G E V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-LGQSTPNFTLTTGQERGVN 188
Query: 123 SVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
V + + T D ++ IW+ + CV+ L+GH +V +HPT+ ++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 181 CSYDNTIKVW 190
S D T+K+W
Sbjct: 246 GSEDGTLKIW 255
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFV 143
Query: 272 FSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 328
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPL 195
Query: 329 GERRLLASASDDGMIKIWE 347
++ + +ASDD IKIW+
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
S D +R++ + K V E H +RS A P+ + + S D T +W +
Sbjct: 74 SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
++ T EGHE+ V V++N + A+ D++V +W + G ++ G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
V V ++P D + + S D TIK+W D CV T+ GH S + F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
+ ++S S+D T+KIW + +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 8 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
NY E + E H D + S+A PT P S S D TV++W W
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK------PYVLSGSDDLTVKLWN-------WENN 129
Query: 67 AVLE---EMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
LE E H V A++P A+ D T +W +G G E V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-LGQSTPNFTLTTGQERGVN 188
Query: 123 SVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
V + + T D ++ IW+ + CV+ L+GH +V +HPT+ ++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 181 CSYDNTIKVW 190
S D T+K+W
Sbjct: 246 GSEDGTLKIW 255
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
E V E H + ++S++ + + + + D +V W WE N + +GH V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
V ++P F+ D T+KVW + + N+ G + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
DK +++ SDDLTIKIW Y + + T+ G+ F+V II
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
SG+ D +++
Sbjct: 245 SGSEDGTLK 253
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
H I +++ + ++S SDDLT+K+W + +W T G H+ +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----------NNWALEQTFEG-HEHFV 143
Query: 272 FSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 328
V ++ + ASG D +V+ + + P++ + +E+ VN V + P
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG----VNYVDYYPL 195
Query: 329 GERRLLASASDDGMIKIWE 347
++ + +ASDD IKIW+
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+Q+ GH V L P+ F S DK +W+ R C E H
Sbjct: 189 LQSFHGHGADVLCLDLAPSE----TGNTFVSGGCDKKAMVWDM----RSGQCVQAFE-TH 239
Query: 74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE-CVATLEGHENEVKSVSWNASGTL 132
V S + PSG A+ S DAT C D+ D E + + E SV ++ SG L
Sbjct: 240 ESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
L D ++ +W+V+ G+ VS+L GH V ++ P S S+D+T++VW
Sbjct: 299 LFAGYNDYTINVWDVLKGSR---VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-- 129
MHT + +C+++ S + TAS D T +W+ G + + + GH +V + S
Sbjct: 152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG--QLLQSFHGHGADVLCLDLAPSET 209
Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 189
G + G DK +W++ G +CV + H DV V+++P+ D S S D T ++
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
+ D +D + + G SS ++LS G L + +D TI +W
Sbjct: 267 Y---DLRADREVAIYSKESIIFGASSVDFSLS----GRLLFAGYNDYTINVW 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 35/244 (14%)
Query: 7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
G + ++ +TL+GH ++V + W S S D V +W+ F K
Sbjct: 50 GQFVMKTRRTLKGHGNKVLCMDWCKD------KRRIVSSSQDGKVIVWDS-----FTTNK 98
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW-------EDVGGDYECVATLEGHEN 119
M V +CA++PSG +A D ++ E++ + VA H N
Sbjct: 99 EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM---HTN 155
Query: 120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDV 177
+ + S+ S + T D + +W+V G + + GH DV + P T +
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 237
S D VW D + CVQ H S + ++ + GD S SDD T
Sbjct: 213 FVSGGCDKKAMVW-----DMRSGQCVQAFET----HESDVNSVRYYPSGDAFASGSDDAT 263
Query: 238 IKIW 241
+++
Sbjct: 264 CRLY 267
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 29/238 (12%)
Query: 113 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
TL+GH N+V + W + + +D V +W+ N+ V++ V +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM---PCTWVMACAYA 115
Query: 173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
P+ + DN V+ ++N + +S H++ + A SF ++++
Sbjct: 116 PSGCAIACGGLDNKCSVYPLTFDKNEN---MAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 233 SDDLTIKIWGADITR-MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 290
S D T +W + + +QS G+ + D + S G SG D
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGA-----------DVLCLDLAPSETGNTFVSGGCDKK 221
Query: 291 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ D+ G + + H+ DVNSV++ P AS SDD ++++L
Sbjct: 222 AMVW-----DMRSGQCVQAF----ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDL 269
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 46/343 (13%)
Query: 17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE----EM 72
L GH V SLA T A S S DKT+ W + C L E
Sbjct: 9 LTGHRGWVTSLACPQTPET---ATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
H+ V A S +G +AS+D + +W G +C GH +V SV+++
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--QCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQ--GHAQDVKMVQWHPTMD--VLFSCSYDNTIK 188
+ + GRD ++ +W V + EC+ L H V V++ P++D V+ S +DN +K
Sbjct: 124 IVSGGRDNALRVWNV----KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 189 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 248
VW D V + GH++ + +++ + G S D ++W D+T+
Sbjct: 180 VW-----DLATGRLVTDL----KGHTNYVTSVTVSPDGSLCASSDKDGVARLW--DLTKG 228
Query: 249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF-VESKDDLID-GPS 306
++ A+ + I +R +W A + ++ F +E+KD +++ P
Sbjct: 229 EALSEMAAGAPINQICFSPNR-----YW------MCAATEKGIRIFDLENKDIIVELAPE 277
Query: 307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
+ + K + S+ WS + L S D +I++W ++
Sbjct: 278 H----QGSKKIVPECVSIAWS-ADGSTLYSGYTDNVIRVWGVS 315
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
G ++R +TL GH +++++ W G D + + S S D + IW+ ++ K
Sbjct: 52 GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLVSASQDGKLIIWDSYTTN-----K 100
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
+ + V +CA++PSG +A D I+ + G+ L GH +
Sbjct: 101 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 160
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
+ ++ + G D + +W++ + + GH DV + P + S + D
Sbjct: 161 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
+ K+W D C QT + GH S I A+ F G+ + SDD T +++
Sbjct: 217 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 265
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
+++ ++ H I G I SV +S+ G + DD
Sbjct: 266 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 302
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
QT GH + ++ + P FA+ S D T R+++ A + ++ H
Sbjct: 231 QTFTGHESDINAICFFPNGNA------FATGSDDATCRLFDLRAD------QELMTYSHD 278
Query: 75 RTV---RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
+ S ++S SG+LL D +W+ + D V L GH+N V + G
Sbjct: 279 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDNRVSCLGVTDDGM 336
Query: 132 LLATCGRDKSVWIWE 146
+AT D + IW
Sbjct: 337 AVATGSWDSFLKIWN 351
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 113 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 117
Query: 173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 118 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 171
Query: 233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 291
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 172 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 292 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 220 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 266
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
G ++R +TL GH +++++ W G D + + S S D + IW+ ++ K
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLVSASQDGKLIIWDSYTTN-----K 89
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
+ + V +CA++PSG +A D I+ + G+ L GH +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
+ ++ + G D + +W++ + + GH DV + P + S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
+ K+W D C QT + GH S I A+ F G+ + SDD T +++
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
+++ ++ H I G I SV +S+ G + DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
QT GH + ++ + P FA+ S D T R+++ A + ++ H
Sbjct: 220 QTFTGHESDINAICFFPNGNA------FATGSDDATCRLFDLRAD------QELMTYSHD 267
Query: 75 RTV---RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
+ S ++S SG+LL D +W+ + D V L GH+N V + G
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDNRVSCLGVTDDGM 325
Query: 132 LLATCGRDKSVWIWE 146
+AT D + IW
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 113 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 291
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 292 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
G ++R +TL GH +++++ W G D + + S S D + IW+ ++ K
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLVSASQDGKLIIWDSYTTN-----K 89
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
+ + V +CA++PSG +A D I+ + G+ L GH +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
+ ++ + G D + +W++ + + GH DV + P + S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
+ K+W D C QT + GH S I A+ F G+ + SDD T +++
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
+++ ++ H I G I SV +S+ G + DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
QT GH + ++ + P FA+ S D T R+++ A + ++ H
Sbjct: 220 QTFTGHESDINAICFFPNGNA------FATGSDDATCRLFDLRAD------QELMTYSHD 267
Query: 75 RTV---RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
+ S ++S SG+LL D +W+ + D V L GH+N V + G
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDNRVSCLGVTDDGM 325
Query: 132 LLATCGRDKSVWIWE 146
+AT D + IW
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 113 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 291
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 292 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
G ++R +TL GH +++++ W G D + + S S D + IW+ ++ K
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLLSASQDGKLIIWDSYTTN-----K 89
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
+ + V +CA++PSG +A D I+ + G+ L GH +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
+ ++ + G D + +W++ + + GH DV + P + S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
+ K+W D C QT + GH S I A+ F G+ + SDD T +++
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
+++ ++ H I G I SV +S+ G + DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
QT GH + ++ + P FA+ S D T R+++ A + ++ H
Sbjct: 220 QTFTGHESDINAICFFPNGNA------FATGSDDATCRLFDLRAD------QELMTYSHD 267
Query: 75 RTV---RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
+ S ++S SG+LL D +W+ + D V L GH+N V + G
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDNRVSCLGVTDDGM 325
Query: 132 LLATCGRDKSVWIWE 146
+AT D + IW
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 113 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 291
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 292 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
G ++R +TL GH +++++ W G D + + S S D + IW+ ++ K
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLLSASQDGKLIIWDSYTTN-----K 89
Query: 67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
+ + V +CA++PSG +A D I+ + G+ L GH +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
+ ++ + G D + +W++ + + GH DV + P + S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
+ K+W D C QT + GH S I A+ F G+ + SDD T +++
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
+++ ++ H I G I SV +S+ G + DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
QT GH + ++ + P FA+ S D T R+++ A + ++ H
Sbjct: 220 QTFTGHESDINAICFFPNGNA------FATGSDDATCRLFDLRAD------QELMTYSHD 267
Query: 75 RTV---RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
+ S ++S SG+LL D +W+ + D V L GH+N V + G
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDNRVSCLGVTDDGM 325
Query: 132 LLATCGRDKSVWIWE 146
+AT D + IW
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/237 (18%), Positives = 95/237 (40%), Gaps = 32/237 (13%)
Query: 113 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
TL GH ++ ++ W LL + +D + IW+ N+ + + + V +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYA 106
Query: 173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
P+ + + DN ++ + + + +S GH+ + F +++V+
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGHTGYLSCCRF-LDDNQIVTS 160
Query: 233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 291
S D T +W + + + H + S+ + + + SGA D S
Sbjct: 161 SGDTTCALWDIETGQQTT------------TFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 292 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
+ + D+ +G M + H+ D+N++ + P A+ SDD ++++L
Sbjct: 209 KLW-----DVREG----MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDL 255
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%)
Query: 10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
+ + ++ + H+ RV SL+W + SG ++ I R
Sbjct: 189 QQKRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDV--RVAEHHVAT 236
Query: 70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN 127
H++ V W+P G+ LA+ D +W G+ + + T H+ VK+V+W
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 128 A-SGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-- 182
+LAT G D+ + IW V G C+S + H+Q V + W P L S
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGF 352
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
N + +W + + ++E GH+S + +L+ + G + S + D T+++W
Sbjct: 353 AQNQLVIW--------KYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Query: 48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD 107
D +V +W S+ + + E + S AW G LA + A +W DV
Sbjct: 135 DNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW-DV-QQ 189
Query: 108 YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK 167
+ + + H V S+SWN+ +L++ R + +V V+ L GH+Q+V
Sbjct: 190 QKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 245
Query: 168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
++W P L S DN + VW + + W +QT ++ + W
Sbjct: 246 GLRWAPDGRHLASGGNDNLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAW 295
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 144
SG +LA A D + +W GD + +E + SV+W G LA V +
Sbjct: 126 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 184
Query: 145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK---VWWAEDTDSDNWH 201
W+V ++ H+ V + W+ +L S S I V AE H
Sbjct: 185 WDVQQQKRLRNMT---SHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAE-------H 232
Query: 202 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC 261
V T+S GHS + L + G L S +D + +W S G W L
Sbjct: 233 HVATLS----GHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPGEGGWVPLQ 281
Query: 262 TISGYHDRTIFSVHWS--REGIIASGAA 287
T + H + +V W + ++A+G
Sbjct: 282 TFT-QHQGAVKAVAWCPWQSNVLATGGG 308
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 51/251 (20%)
Query: 17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
L GH VW+L + + S S D+TVR+W+ C + E H T
Sbjct: 158 LSGHDGGVWALKYAH-------GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNST 205
Query: 77 VR--SCAWSPSGKLLATASFDATTCIWE--------DVGGDYE-------------CVAT 113
VR + K + T S D T +W+ D G +++ V
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 173
L GH V++VS G ++ + D ++ +W+V + +C+ +L GH + +
Sbjct: 266 LRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDH 320
Query: 174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 233
S S D TI++W D +N + T+ GH++ + L + K LVS +
Sbjct: 321 ERKRCISASMDTTIRIW-----DLENGELMYTLQ----GHTALVGLLRLSDKF--LVSAA 369
Query: 234 DDLTIKIWGAD 244
D +I+ W A+
Sbjct: 370 ADGSIRGWDAN 380
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
+++ + L GHTDR++S + D S S D T+RIW+ + +
Sbjct: 299 QMKCLYILSGHTDRIYSTIY------DHERKRCISASMDTTIRIWDLENGELMYTLQG-- 350
Query: 70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWE 102
HT V S K L +A+ D + W+
Sbjct: 351 ---HTALV--GLLRLSDKFLVSAAADGSIRGWD 378
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 98/253 (38%), Gaps = 34/253 (13%)
Query: 14 IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
I TL GH VW + W P G + ASCS D V IW++ W+ AV +
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVXIWKEENGR--WSQIAV-HAV 97
Query: 73 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
H+ +V S W+P G L AS D + E ++ H V S SW A
Sbjct: 98 HSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
T+ T G D V IW+ + S L+GH+ V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
S S D T + W +D + W E +W S++ G+ L
Sbjct: 217 LLRSYXASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
D + +W ++
Sbjct: 273 GGDNKVTLWKENL 285
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 68 VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
V+ H + GK AT S D T I+E G ++ + TL GHE V V W
Sbjct: 3 VIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 128 AS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 173
GT+LA+C D V IW+ G + ++V H+ V VQW P
Sbjct: 63 HPKFGTILASCSYDGKVXIWKEENG-RWSQIAVHAVHSASVNSVQWAP 109
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TLEGH+D V +AW PT + AS S D+T IW Q W + EE
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYX---ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 76 TVRSCAWSPSGKLLATASFDATTCIW-EDVGGDYE 109
+ +WS SG +LA + D +W E++ G +E
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 95/254 (37%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
V H + + G ATC DK++ I+EV G + + L GH V V
Sbjct: 2 VVIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 171 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
W HP +L SCSYD + +W E+ W + + + +S WA + G
Sbjct: 61 WAHPKFGTILASCSYDGKVXIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPX 115
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
L+ S D + + + ++G I H + S W+ I G
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
+S +F D+L+ D +Y +L + H V V WSP R AS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 337 ASDDGMIKIWELAN 350
S D IW N
Sbjct: 225 VSQDRTCIIWTQDN 238
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 101/275 (36%), Gaps = 35/275 (12%)
Query: 43 ASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPS--GKLLATASFDATT 98
A+CS DKT++I+E + +++ + H V W+ G +LA+ S+D
Sbjct: 25 ATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 99 CIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWEVMPGNEFECV 156
IW++ G + +A H V SV W + G L D V + E +
Sbjct: 80 XIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPI 139
Query: 157 SVLQGHAQDVKMVQWHPTM-------------DVLFSCSYDNTIKVWWAEDTDSDNWHCV 203
++ HA V W P + DN +K+ W ++D+ +
Sbjct: 140 -IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI-WKYNSDAQTYVLE 197
Query: 204 QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI 263
T+ ++ W+ + + S S D T IW D + W+
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLR-SYXASVSQDRTCIIWTQD-------NEQGPWKKTLLK 249
Query: 264 SGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 297
++ WS G ++A D+ V + E+
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%)
Query: 10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
+ + ++ + H+ RV SL+W + SG ++ I R
Sbjct: 178 QQKRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDV--RVAEHHVAT 225
Query: 70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN 127
H++ V W+P G+ LA+ D +W G+ + + T H+ VK+V+W
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 128 A-SGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-- 182
+LAT G D+ + IW V G C+S + H+Q V + W P L S
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGF 341
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
N + +W + + ++E GH+S + +L+ + G + S + D T+++W
Sbjct: 342 AQNQLVIW--------KYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Query: 48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD 107
D +V +W S+ + + E + S AW G LA + A +W DV
Sbjct: 124 DNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW-DV-QQ 178
Query: 108 YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK 167
+ + + H V S+SWN+ +L++ R + +V V+ L GH+Q+V
Sbjct: 179 QKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 234
Query: 168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
++W P L S DN + VW + + W +QT ++ + W
Sbjct: 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAW 284
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 144
SG +LA A D + +W GD + +E + SV+W G LA V +
Sbjct: 115 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173
Query: 145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK---VWWAEDTDSDNWH 201
W+V ++ H+ V + W+ +L S S I V AE H
Sbjct: 174 WDVQQQKRLRNMT---SHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAE-------H 221
Query: 202 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC 261
V T+S GHS + L + G L S +D + +W S G W L
Sbjct: 222 HVATLS----GHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPGEGGWVPLQ 270
Query: 262 TISGYHDRTIFSVHWS--REGIIASGAA 287
T + H + +V W + ++A+G
Sbjct: 271 TFT-QHQGAVKAVAWCPWQSNVLATGGG 297
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%)
Query: 10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
+ + ++ + H+ RV SL+W + SG ++ I R
Sbjct: 98 QQKRLRNMTSHSARVGSLSWNS----------YILSSGSRSGHIHHHDV--RVAEHHVAT 145
Query: 70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN 127
H++ V W+P G+ LA+ D +W G+ + + T H+ VK+V+W
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 128 A-SGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-- 182
+LAT G D+ + IW V G C+S + H+Q V + W P L S
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGF 261
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
N + +W + + ++E GH+S + +L+ + G + S + D T+++W
Sbjct: 262 AQNQLVIW--------KYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Query: 48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD 107
D +V +W S+ + + E + S AW G LA + A +W DV
Sbjct: 44 DNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW-DV-QQ 98
Query: 108 YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK 167
+ + + H V S+SWN+ +L++ R + +V V+ L GH+Q+V
Sbjct: 99 QKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 154
Query: 168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
++W P L S DN + VW + + W +QT ++ + W
Sbjct: 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAW 204
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 51 VRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC 110
V++W+ R N + H+ V S +W+ +L++ S DV
Sbjct: 91 VQLWDVQQQKRLRNMTS-----HSARVGSLSWN--SYILSSGSRSGHIHH-HDVRVAEHH 142
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDV 166
VATL GH EV + W G LA+ G D V +W PG + + QG + V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 167 KMVQWHPTMDVLFSCSYDNTIKVW 190
W + + D I++W
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIW 226
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 101/258 (39%), Gaps = 42/258 (16%)
Query: 85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 144
SG +LA A D + +W GD + +E + SV+W G LA V +
Sbjct: 35 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93
Query: 145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK---VWWAEDTDSDNWH 201
W+V ++ H+ V + W+ +L S S I V AE H
Sbjct: 94 WDVQQQKRLRNMT---SHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAE-------H 141
Query: 202 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC 261
V T+S GHS + L + G L S +D + +W S G W L
Sbjct: 142 HVATLS----GHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPGEGGWVPLQ 190
Query: 262 TISGYHDRTIFSVHWS--REGIIASGA--ADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 317
T + H + +V W + ++A+G +D ++ + ++ G L AH
Sbjct: 191 TFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW-----NVCSG----ACLSAVDAH 240
Query: 318 DMDVNSVQWSPGERRLLA 335
V S+ WSP + L++
Sbjct: 241 S-QVCSILWSPHYKELIS 257
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/336 (19%), Positives = 134/336 (39%), Gaps = 34/336 (10%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TL+GH V +A P + S S DKT+ +W+ + + H+
Sbjct: 33 TLKGHNGWVTQIATTPQ-----FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V S G+ + S+D T +W+ G GH +V SV++++ + +
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAE 193
RDK++ +W + ++ + H++ V V++ P + ++ SC +D +KVW
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
+ H GH+ + ++ + G S D +W +
Sbjct: 204 NCKLKTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN--------- 245
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 313
+HL T+ G I ++ +S A S++ + ++D +++
Sbjct: 246 --EGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301
Query: 314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
KA S+ WS + L A +D+ ++++W++
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDN-LVRVWQVT 336
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCV 203
++ M + L+GH V + P D++ S S D TI + W D N+
Sbjct: 20 FQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI-IMWKLTRDETNYGIP 78
Query: 204 QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI 263
Q + GHS + + ++ G +S S D T+++W D+T G + R +
Sbjct: 79 Q---RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW--DLTT-----GTTTRRFVG-- 126
Query: 264 SGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN 322
H + + SV +S + I SG+ D +++ + + + Y + ++++H V+
Sbjct: 127 ---HTKDVLSVAFSSDNRQIVSGSRDKTIKLW-----NTLGVCKYTV---QDESHSEWVS 175
Query: 323 SVQWSPGERR-LLASASDDGMIKIWELAN 350
V++SP ++ S D ++K+W LAN
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 38/253 (15%)
Query: 14 IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
I L GH VW +AW P G + ASCS D+ V IW + + W K+
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYG-----NILASCSYDRKVIIWREENGT--WE-KSHEHAG 101
Query: 73 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNAS 129
H +V S W+P G +LA S D + G G +E H +VSW +
Sbjct: 102 HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161
Query: 130 ---GTLL--------------ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
G+L+ A+ G D + +W+ +++ L+ H+ V+ V W
Sbjct: 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221
Query: 173 PTMDV----LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
P++ + + SCS D + +W +D S+ W + + + N+ +W +S++ +
Sbjct: 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTW-SPKLLHKFND----VVWHVSWSITANI 276
Query: 229 LVSCSDDLTIKIW 241
L D + +W
Sbjct: 277 LAVSGGDNKVTLW 289
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 39/291 (13%)
Query: 33 AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPS--GKL 88
A +D A+CS D++V+I++ + ++ ++ H V AW+ G +
Sbjct: 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNI 73
Query: 89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWE 146
LA+ S+D IW + G +E GH++ V SV W G +LA D ++ +
Sbjct: 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPT-----------------MDVLFSCSYDNTIKV 189
++E + H V W P + S DN IK+
Sbjct: 134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
W ++ + W Q + ++ WA S + SCS D + IW D
Sbjct: 194 W--KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD----- 246
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDSVQFFVESKD 299
D ++ + ++D ++ V WS I+A D+ V + ES D
Sbjct: 247 --DASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKESVD 294
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 48/255 (18%)
Query: 117 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW-HPTM 175
HE+ + + GT LATC D+SV I++V G + ++ L+GH V V W HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMY 70
Query: 176 -DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSC 232
++L SCSYD + +W E+ + S + GH S++ ++ + G L
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEK-------SHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI----------- 281
S D I + + G W + I+ H +V W+ +
Sbjct: 124 SSDGAIS--------LLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174
Query: 282 -------IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG---ER 331
ASG D+ ++ + E +D +K K E AH V V W+P
Sbjct: 175 KPNYIKRFASGGCDNLIKLWKEEEDG-----QWKEEQKLE-AHSDWVRDVAWAPSIGLPT 228
Query: 332 RLLASASDDGMIKIW 346
+AS S DG + IW
Sbjct: 229 STIASCSQDGRVFIW 243
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 1 MEFLDDGNYELREIQTLE--GHTDRVWSLAWKPTAGVD---GVAP----VFASCSGDKTV 51
+ + +G +E+++I G W+ A P + +D G P FAS D +
Sbjct: 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI 191
Query: 52 RIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL----LATASFDATTCIW--EDVG 105
++W++ + W + LE H+ VR AW+PS L +A+ S D IW +D
Sbjct: 192 KLWKEEEDGQ-WKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249
Query: 106 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 157
+ L + V VSW+ + +LA G D V +W+ ++ C+S
Sbjct: 250 SNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCIS 301
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 21/147 (14%)
Query: 203 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 262
V I+ + H I + G +L +CS D ++KI+ +++G +
Sbjct: 2 VSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIF-----DVRNGGQIL----IAD 52
Query: 263 ISGYHDRTIFSVHWSRE---GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM 319
+ G H+ ++ V W+ I+AS + D V + E +G K + HD
Sbjct: 53 LRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE-----NGTWEKS--HEHAGHDS 104
Query: 320 DVNSVQWSPGERRL-LASASDDGMIKI 345
VNSV W+P + L LA S DG I +
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISL 131
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/335 (19%), Positives = 134/335 (40%), Gaps = 34/335 (10%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
TL+GH V +A P + S S DKT+ +W+ + + H+
Sbjct: 10 TLKGHNGWVTQIATTPQ-----FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 64
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V S G+ + S+D T +W+ G GH +V SV++++ + +
Sbjct: 65 FVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAE 193
RDK++ +W + ++ + H++ V V++ P + ++ SC +D +KVW
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
+ H GH+ + ++ + G S D +W +
Sbjct: 181 NCKLKTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN--------- 222
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 313
+HL T+ G I ++ +S A S++ + ++D +++
Sbjct: 223 --EGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278
Query: 314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
KA S+ WS + L A +D+ ++++W++
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDN-LVRVWQV 312
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 27/195 (13%)
Query: 159 LQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 217
L+GH V + P D++ S S D TI + W D N+ Q + GHS +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTI-IMWKLTRDETNYGIPQ---RALRGHSHFV 66
Query: 218 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 277
+ ++ G +S S D T+++W D+T + + H + + SV +S
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLW--DLTTGTTTRRFVG----------HTKDVLSVAFS 114
Query: 278 REGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR-LLA 335
+ I SG+ D +++ + + + Y + ++++H V+ V++SP ++
Sbjct: 115 SDNRQIVSGSRDKTIKLW-----NTLGVCKYTV---QDESHSEWVSCVRFSPNSSNPIIV 166
Query: 336 SASDDGMIKIWELAN 350
S D ++K+W LAN
Sbjct: 167 SCGWDKLVKVWNLAN 181
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 51/251 (20%)
Query: 17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
L GH VW+L + + S S D+TVR+W+ C + E H T
Sbjct: 158 LSGHDGGVWALKYAH-------GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNST 205
Query: 77 VR--SCAWSPSGKLLATASFDATTCIWE--------DVGGDYE-------------CVAT 113
VR + K + T S D T +W+ D G +++ V
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 173
L GH V++VS G ++ + D ++ +W+V + +C+ +L GH + +
Sbjct: 266 LRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVA---QXKCLYILSGHTDRIYSTIYDH 320
Query: 174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 233
S S D TI++W D +N T+ GH++ + L + K LVS +
Sbjct: 321 ERKRCISASXDTTIRIW-----DLENGELXYTLQ----GHTALVGLLRLSDKF--LVSAA 369
Query: 234 DDLTIKIWGAD 244
D +I+ W A+
Sbjct: 370 ADGSIRGWDAN 380
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
+TL+GH+ +V+SL W P S S D + +W S + K +H
Sbjct: 60 RTLQGHSGKVYSLDWTPEKN------WIVSASQDGRLIVWNALTSQKTHAIK-----LHC 108
Query: 75 RTVRSCAWSPSGKLLATASFDATTCIWE-----DVGGDYECVATLEGHENEVKSVSWNA- 128
V CA++P+G+ +A D+ I+ D G+ L GH+ S +
Sbjct: 109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 129 SGTLLATCGRDKSVWIWEVMPGNEFECVS--VLQGHAQDVKMVQWHP-TMDVLFSCSYDN 185
T L T D++ +W+V G GH DV + + ++ S S D
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
T+++W + + +GH I ++ F G + + SDD T +++
Sbjct: 229 TVRLW--------DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 93/241 (38%), Gaps = 18/241 (7%)
Query: 6 DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC 65
DGN + + L GH S + P + SGD+T +W+ + R
Sbjct: 144 DGNMPVSRV--LTGHKGYASSCQYVPDQETR-----LITGSGDQTCVLWDVTTGQRISIF 196
Query: 66 KAVLEEMHTRTVRSCAW-SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSV 124
+ HT V S + S + + + S D T +W D+ V T GHE ++ SV
Sbjct: 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW-DLRITSRAVRTYHGHEGDINSV 255
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD----VKMVQWHPTMDVLFS 180
+ G T D + ++++ G++ + + + V V + + +LF+
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315
Query: 181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 240
+ VW D+ V + N H I L ++ G L + S D +KI
Sbjct: 316 GYSNGDCYVW-----DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Query: 241 W 241
W
Sbjct: 371 W 371
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 101/244 (41%), Gaps = 22/244 (9%)
Query: 107 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 166
D C TL+GH +V S+ W + + +D + +W + + + + H V
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---HCPWV 111
Query: 167 KMVQWHPTMDVLFSCSYDNTIKVW-WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
+ P + D+ ++ + D D V + + G++S+ + +
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQ 169
Query: 226 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGIIAS 284
+L++ S D T +W D+T Q + S SG+ D S++ + S
Sbjct: 170 ETRLITGSGDQTCVLW--DVTTGQRISIFGSE----FPSGHTADVLSLSINSLNANMFIS 223
Query: 285 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 344
G+ D +V+ + D ++ H+ D+NSV++ P +R + SDDG +
Sbjct: 224 GSCDTTVRLW--------DLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCR 274
Query: 345 IWEL 348
++++
Sbjct: 275 LFDM 278
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
T+ HTD V ++A P D + S S DK++ +W+ + + + H+
Sbjct: 377 TMRAHTDMVTAIA-TPIDNAD----IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
V S G+ + S+D +W+ G GH +V SV+++ + +
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAE 193
RD+++ +W + ++ +GH V V++ P + S S+D T+KVW
Sbjct: 490 ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW--- 546
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
+ N T++ GH+ + ++ + G S D + +W
Sbjct: 547 --NLSNCKLRSTLA----GHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 39/242 (16%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM---HTR 75
GHT V S+A+ +D V S S D+T+++W + CK + E H
Sbjct: 470 GHTKDVLSVAFS----LDNRQIV--SASRDRTIKLW-----NTLGECKYTISEGGEGHRD 518
Query: 76 TVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL 133
V +SP+ + +AS+D T +W + + +TL GH V +V+ + G+L
Sbjct: 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNL--SNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 134 ATCGRDKSVWIWEVMPGNE---FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
A+ G+D V +W++ G + E SV+ HA + + P L + + ++ IK+W
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSLEANSVI--HA-----LCFSPNRYWLCAAT-EHGIKIW 628
Query: 191 WAEDTDSDNWHCVQTISES----NNGHSST----IWALSFN--AKGDKLVSCSDDLTIKI 240
E V +E+ N+G ++T I+ S N A G L S D I++
Sbjct: 629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688
Query: 241 WG 242
WG
Sbjct: 689 WG 690
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 27/238 (11%)
Query: 17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE--QSASSRFWNCKAVLEEMHT 74
LEGH+D V S+ + + +PV S S DKTV IW+ + + ++ H
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 75 RTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASGTLL 133
V A S ++S+D T +W+ G Y+ GH++EV SV+++ +
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNRQI 133
Query: 134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD----------VLFSCSY 183
+ G ++ + +W ++ +F + H+ V V++ P M S +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 184 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
D +KVW + N+ T H S + LS + G + + D + IW
Sbjct: 193 DGRLKVW------NTNFQIRYTFK----AHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH V+S+A+ P S ++ +++W +F + + +E H+ V
Sbjct: 116 GHQSEVYSVAFSPDNRQ------ILSAGAEREIKLWNILGECKFSSAE---KENHSDWVS 166
Query: 79 SCAWSPSGK----------LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
+SP K A+ +D +W +++ T + HE+ V +S +
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISP 223
Query: 129 SGTLLATCGRDKSVWIWEVM----PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
+G +AT G+DK + IW+++ P EF+ S + A + K+ QW + D
Sbjct: 224 NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL-QW-------VAVGTD 275
Query: 185 NTIKVWWAEDTDSDNWHCV-----QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 239
+K++ T S C T +E G + +L++NA G KL + D I+
Sbjct: 276 QGVKIFNLM-TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334
Query: 240 IW 241
+
Sbjct: 335 TF 336
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK--AVL 69
+ + + GHT V +AW P V AS S D TV +WE + +
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDN-----VIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 70 EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
E HT+ V AW P+ + +L +A D +W+ G + H + + SV W+
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 129 SGTLLATCGRDKSVWIWEVMPGN 151
G L+ T RDK V + E G
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 111 VATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF----ECVSVLQGHAQD 165
V + GH V ++W + ++A+ D +V +WE+ G E V L+GH +
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 166 VKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 224
V +V WHPT +VL S DN I VW D V T+ + H TI+++ ++
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVW-----DVGTGAAVLTLGP--DVHPDTIYSVDWSR 186
Query: 225 KGDKLVSCSDDLTIKI 240
G + + D +++
Sbjct: 187 DGALICTSCRDKRVRV 202
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 11 LRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
LRE + TLEGHT RV +AW PTA V S D + +W+ +
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTA-----QNVLLSAGXDNVILVWDVGTGAAVLTLGP-- 172
Query: 70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG 106
++H T+ S WS G L+ T+ D + E G
Sbjct: 173 -DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 156 VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 214
V ++ GH V + W P D V+ S S D T+ VW E D ++ + GH+
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHT 131
Query: 215 STIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS 273
+ ++++ L+S D I +W G G A L H TI+S
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDV-------GTGAAV---LTLGPDVHPDTIYS 181
Query: 274 VHWSREG-IIASGAADDSVQFFVESKDDLI 302
V WSR+G +I + D V+ K ++
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 267 HDRTIFSVHWS--REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV 324
H + + W + +IASG+ D +V + E D + P + ++ E H V V
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVW-EIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 325 QWSPGERRLLASASDDGMIKIWELAN 350
W P + +L SA D +I +W++
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGT 163
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK--AVL 69
+ + + GHT V +AW P V AS S D TV +WE + +
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDN-----VIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 70 EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
E HT+ V AW P+ + +L +A D +W+ G + H + + SV W+
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 129 SGTLLATCGRDKSVWIWEVMPGN 151
G L+ T RDK V + E G
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 111 VATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF----ECVSVLQGHAQD 165
V + GH V ++W + ++A+ D +V +WE+ G E V L+GH +
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 166 VKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 224
V +V WHPT +VL S DN I VW D V T+ + H TI+++ ++
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVW-----DVGTGAAVLTLGP--DVHPDTIYSVDWSR 186
Query: 225 KGDKLVSCSDDLTIKI 240
G + + D +++
Sbjct: 187 DGALICTSCRDKRVRV 202
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 11 LRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
LRE + TLEGHT RV +AW PTA V S D + +W+ + AVL
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTA-----QNVLLSAGCDNVILVWDVGTGA------AVL 168
Query: 70 ---EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG 106
++H T+ S WS G L+ T+ D + E G
Sbjct: 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 156 VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 214
V ++ GH V + W P D V+ S S D T+ VW E D ++ + GH+
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHT 131
Query: 215 STIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS 273
+ ++++ L+S D I +W G G A L H TI+S
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDV-------GTGAAV---LTLGPDVHPDTIYS 181
Query: 274 VHWSREG-IIASGAADDSVQFFVESKDDLI 302
V WSR+G +I + D V+ K ++
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 267 HDRTIFSVHW--SREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV 324
H + + W + +IASG+ D +V + E D + P + ++ E H V V
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVW-EIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 325 QWSPGERRLLASASDDGMIKIWELAN 350
W P + +L SA D +I +W++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGT 163
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 36/241 (14%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+ TL GH V SL+++ DGV S S DKT ++W++ S +N +A H
Sbjct: 97 LYTLIGHQGNVCSLSFQ-----DGVV---ISGSWDKTAKVWKE--GSLVYNLQA-----H 141
Query: 74 TRTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGT 131
+V + S S TAS D T +W+ + + + T G H + V+ ++ G
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQ----NDKVIKTFSGIHNDVVRHLAVVDDGH 197
Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 191
+ +C D + + + G + + +GH V ++ P D++ SC D T+++W
Sbjct: 198 FI-SCSNDGLIKLVDXHTG---DVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWS 252
Query: 192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 251
E+ + IS IW++ + GD +V SD+L ++I+ + +R S
Sbjct: 253 KENGSLKQVITLPAIS---------IWSVDCXSNGDIIVGSSDNL-VRIFSQEKSRWASE 302
Query: 252 D 252
D
Sbjct: 303 D 303
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 40/224 (17%)
Query: 80 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV---KSVSWNASGTLLATC 136
C+ S ++ + S+D T +W++ V L+ H V K VS++ + L A+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163
Query: 137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAED 194
DK++ +W+ N+ + + G DV V+ +D SCS D IK+
Sbjct: 164 --DKTIKLWQ----ND-KVIKTFSGIHNDV--VRHLAVVDDGHFISCSNDGLIKLVDXHT 214
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 254
D + + GH S ++ + GD +VSC +D T++IW +
Sbjct: 215 GD---------VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKE---------N 255
Query: 255 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 298
S + + T+ +I+SV G I G++D+ V+ F + K
Sbjct: 256 GSLKQVITLPAI---SIWSVDCXSNGDIIVGSSDNLVRIFSQEK 296
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 118 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 175 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
Query: 246 TRMQSG 251
RM +
Sbjct: 229 KRMMNA 234
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
Query: 40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS----PSGKLLATASFD 95
P+ + G V ++E + ++ ++ +CAW+ S LLA A
Sbjct: 71 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 130
Query: 96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFE 154
I + +C+ GH N + + ++ LL + +D ++ +W +
Sbjct: 131 GIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 188
Query: 155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
++GH +V + + + SC D+++K+W
Sbjct: 189 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 147
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
E ++ + H EV SVSWN +GT+L++ G D V +W+ NEF+C+SV+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI 347
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 174
GH++ V V ++ G +ATC D+ + ++++ + +E + H + + W
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 175 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 227
++ S SYD T+K+ W ED D + W+ + T+++S S +A + G
Sbjct: 69 EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 125
Query: 228 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 281
KL +D ++++ A + + ++S + + L H ++ F + W S E +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185
Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 338
S A + + KD + + K H + S+ W+P R L+A+
Sbjct: 186 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 339 DDGMIKIWELANTL 352
DG I+I+++ L
Sbjct: 238 KDGRIRIFKITEKL 251
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 42 FASCSGDKTVRIWE--QSASSRFWNCKAVLEEM------HTRTVRSCAWSPS---GKLLA 90
A D +R+++ + + R W + ++ + H ++ +W PS + LA
Sbjct: 127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186
Query: 91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS----GTLLATCGRDKSVWIWE 146
++ + G A L GH++ ++S+SW S L+AT +D + I
Sbjct: 187 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI-- 244
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT- 205
F+ L A + + T +F S D + D++++ +Q+
Sbjct: 245 ------FKITEKLSPLASEESL-----TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293
Query: 206 ----ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 243
+ ++ H+ +W++S+N G L S DD +++W A
Sbjct: 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH D V + + D A+CS D+ +++++ + W H ++
Sbjct: 9 GHDDLVHDVVY------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIV 61
Query: 79 SCAW-SPS-GKLLATASFDATTCIWEDVGGDYEC-------VATLEGHENEVKSVSWNAS 129
+ W SP G+++A+AS+D T +WE+ EC + TL + + SV + +
Sbjct: 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121
Query: 130 --GTLLATCGRDKSVWIWEVMPGNEFE 154
G LA G D + +++ + ++
Sbjct: 122 HLGLKLACLGNDGILRLYDALEPSDLR 148
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 259 HLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 317
H+ HD + V + G +A+ ++D ++ F KD S L +AH
Sbjct: 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD-----TSNWELSDSWRAH 56
Query: 318 DMDVNSVQW-SPGERRLLASASDDGMIKIWE 347
D + ++ W SP R++ASAS D +K+WE
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 210 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG--ADITRMQSGDGYASWRHLCTISGYH 267
++GH + + ++ G + +CS D IK++ D + + D SWR H
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWR-------AH 56
Query: 268 DRTIFSVHWSRE---GIIASGAADDSVQFFVESKD-DLIDGPSYKML--LKKEKAHDMDV 321
D +I ++ W+ IIAS + D +V+ + E D + G + L L K +
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG---SL 113
Query: 322 NSVQWSPGERRL-LASASDDGMIKIWE 347
SV+++P L LA +DG++++++
Sbjct: 114 YSVKFAPAHLGLKLACLGNDGILRLYD 140
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
N ++ + + H VWS++W T + +S D VR+W+ + S+ F C +
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGT------ILSSAGDDGKVRLWKATYSNEF-KCMS 345
Query: 68 VL 69
V+
Sbjct: 346 VI 347
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNAS- 129
H V + G+ +AT S D ++ + ++E + H++ + ++ W +
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 130 -GTLLATCGRDKSVWIWEVMPGNEFEC 155
G ++A+ DK+V +WE P E EC
Sbjct: 70 YGRIIASASYDKTVKLWEEDPDQE-EC 95
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
E ++ + H EV SVSWN +GT+L++ G D V +W+ NEF+C+SV+
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI 345
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 174
GH++ V V ++ G +ATC D+ + ++++ + +E + H + + W
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 175 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 227
++ S SYD T+K+ W ED D + W+ + T+++S S +A + G
Sbjct: 67 EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 123
Query: 228 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 281
KL +D ++++ A + + ++S + + L H ++ F + W S E +
Sbjct: 124 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 183
Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 338
S A + + KD + + K H + S+ W+P R L+A+
Sbjct: 184 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 235
Query: 339 DDGMIKIWELANTL 352
DG I+I+++ L
Sbjct: 236 KDGRIRIFKITEKL 249
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 42 FASCSGDKTVRIWE--QSASSRFWNCKAVLEEM------HTRTVRSCAWSPS---GKLLA 90
A D +R+++ + + R W + ++ + H ++ +W PS + LA
Sbjct: 125 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 184
Query: 91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS----GTLLATCGRDKSVWIWE 146
++ + G A L GH++ ++S+SW S L+AT +D + I
Sbjct: 185 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI-- 242
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT- 205
F+ L A + + T +F S D + D++++ +Q+
Sbjct: 243 ------FKITEKLSPLASEESL-----TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 291
Query: 206 ----ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 243
+ ++ H+ +W++S+N G L S DD +++W A
Sbjct: 292 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 333
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH D V + + D A+CS D+ +++++ + W H ++
Sbjct: 7 GHDDLVHDVVY------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIV 59
Query: 79 SCAW-SPS-GKLLATASFDATTCIWEDVGGDYEC-------VATLEGHENEVKSVSWNAS 129
+ W SP G+++A+AS+D T +WE+ EC + TL + + SV + +
Sbjct: 60 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 119
Query: 130 --GTLLATCGRDKSVWIWEVMPGNEFE 154
G LA G D + +++ + ++
Sbjct: 120 HLGLKLACLGNDGILRLYDALEPSDLR 146
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 210 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG--ADITRMQSGDGYASWRHLCTISGYH 267
++GH + + ++ G + +CS D IK++ D + + D SWR H
Sbjct: 5 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWR-------AH 54
Query: 268 DRTIFSVHWSRE---GIIASGAADDSVQFFVESKD-DLIDGPSYKML--LKKEKAHDMDV 321
D +I ++ W+ IIAS + D +V+ + E D + G + L L K +
Sbjct: 55 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG---SL 111
Query: 322 NSVQWSPGERRL-LASASDDGMIKIWE 347
SV+++P L LA +DG++++++
Sbjct: 112 YSVKFAPAHLGLKLACLGNDGILRLYD 138
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
N ++ + + H VWS++W T + +S D VR+W+ + S+ F C +
Sbjct: 291 NLQVELLSEHDDHNGEVWSVSWNLTGT------ILSSAGDDGKVRLWKATYSNEF-KCMS 343
Query: 68 VL 69
V+
Sbjct: 344 VI 345
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNAS- 129
H V + G+ +AT S D ++ + ++E + H++ + ++ W +
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 67
Query: 130 -GTLLATCGRDKSVWIWEVMPGNEFEC 155
G ++A+ DK+V +WE P E EC
Sbjct: 68 YGRIIASASYDKTVKLWEEDPDQE-EC 93
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 77 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 134 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
Query: 246 TRMQSG 251
RM +
Sbjct: 188 KRMMNA 193
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
Query: 40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS----PSGKLLATASFD 95
P+ + G V ++E + ++ ++ +CAW+ S LLA A
Sbjct: 30 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 89
Query: 96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFE 154
I + +C+ GH N + + ++ LL + +D ++ +W +
Sbjct: 90 GIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 147
Query: 155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
++GH +V + + + SC D+++K+W
Sbjct: 148 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 73 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNAS 129
H + + P LL + S D +W ++ D +EGH +EV S ++
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLW-NIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 130 GTLLATCGRDKSVWIWEV 147
G + +CG D S+ +W +
Sbjct: 168 GEKIMSCGMDHSLKLWRI 185
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 81 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 138 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Query: 246 TRMQSG 251
RM +
Sbjct: 192 KRMMNA 197
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
Query: 40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS----PSGKLLATASFD 95
P+ + G V ++E + ++ ++ +CAW+ S LLA A
Sbjct: 34 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 93
Query: 96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFE 154
I + +C+ GH N + + ++ LL + +D ++ +W +
Sbjct: 94 GIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 151
Query: 155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
++GH +V + + + SC D+++K+W
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 147
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 82 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 139 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
Query: 246 TRMQSG 251
RM +
Sbjct: 193 KRMMNA 198
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
Query: 40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS----PSGKLLATASFD 95
P+ + G V ++E + ++ ++ +CAW+ S LLA A
Sbjct: 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94
Query: 96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFE 154
I + +C+ GH N + + ++ LL + +D ++ +W +
Sbjct: 95 GIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 152
Query: 155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
++GH +V + + + SC D+++K+W
Sbjct: 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 147
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
N S LLA G S I ++ +C+ GH + +++HP ++L S S D+
Sbjct: 81 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
+++W + TD+ + I GH + + ++ G+K++SC D ++K+W +
Sbjct: 138 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Query: 246 TRMQSG 251
RM +
Sbjct: 192 KRMMNA 197
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
Query: 40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS----PSGKLLATASFD 95
P+ + G V ++E + ++ ++ +CAW+ S LLA A
Sbjct: 34 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 93
Query: 96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFE 154
I + +C+ GH N + + ++ LL + +D ++ +W +
Sbjct: 94 GIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 151
Query: 155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
++GH +V + + + SC D+++K+W
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 147
+EGH +EV S ++ G + +CG D S+ +W +
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 114 LEGHENEVKSVSWNASGTLLATCGRD-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
L G + SV + S G D +V I+E G F+ S H + V V+++
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE---GPPFKFKSTFGEHTKFVHSVRYN 199
Query: 173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
P + S D TI ++ D + S N HS +++ L+++ G K+ S
Sbjct: 200 PDGSLFASTGGDGTIVLY--NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 233 SDDLTIKIWGADITRMQ 249
S D TIKIW +++
Sbjct: 258 SADKTIKIWNVATLKVE 274
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 29/231 (12%)
Query: 70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
E H TV SPSG A+ IW+ + T+ VK +SW++
Sbjct: 57 EHSHQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114
Query: 130 GTLLATCGRDKS----VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYD 184
+A G + V++++ N L G A+ + V + P+ + S S D
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDD 169
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW-GA 243
NT+ ++ + + T E H+ + ++ +N G S D TI ++ G
Sbjct: 170 NTVAIF-----EGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 244 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQF 293
D T+ G L ++ H ++F + WS +G IAS +AD +++
Sbjct: 221 DGTKT----GVFEDDSLKNVA--HSGSVFGLTWSPDGTKIASASADKTIKI 265
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 149/404 (36%), Gaps = 94/404 (23%)
Query: 16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR--FWNCKAVLEEMH 73
T HT V S+ + P DG +FAS GD T+ ++ ++ + ++ H
Sbjct: 185 TFGEHTKFVHSVRYNP----DG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238
Query: 74 TRTVRSCAWSPSGKLLATASFDATTCIWE----------DVGGDYE-----------CVA 112
+ +V WSP G +A+AS D T IW VG E +
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298
Query: 113 TLE--------------------GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 152
++ GH + ++S +A G L + + + W++ G
Sbjct: 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358
Query: 153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG 212
+ HA + ++ D LF+ S+D+ +KV A + D+ V N
Sbjct: 359 NRVFPDV--HATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVA------NK 409
Query: 213 HSSTIWALSFNAKGDKLV-SCSDDLTIKIWG----------------ADITRMQSGDGYA 255
SS L+ +A GD V +C + I G ++ + + G
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469
Query: 256 SWRHLCTISG---------YHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDG 304
S H+ +SG H I SV +S G ++A+ + + + V + +L
Sbjct: 470 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 529
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
S+ H V V WSP R LA+ S D + +W +
Sbjct: 530 NSWTF-------HTAKVACVSWSPDNVR-LATGSLDNSVIVWNM 565
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE-DVGG 106
D++ ++ S ++ F HT V +WSP LAT S D + +W +
Sbjct: 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569
Query: 107 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 147
D+ + + V SV W + T + + G+D ++ W V
Sbjct: 570 DHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 609
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
E ++ + H EV SVSWN +GT+L++ G D V +W+ NEF+C SV+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVI 347
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 174
GH++ V V ++ G +ATC D+ + ++++ + +E + H + + W
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 175 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 227
++ S SYD T+K+ W ED D + W+ + T+++S S +A + G
Sbjct: 69 EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 125
Query: 228 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 281
KL +D ++++ A + + ++S + + L H ++ F + W S E +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185
Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 338
S A + + KD + + K H + S+ W+P R L+A+
Sbjct: 186 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 339 DDGMIKIWELANTL 352
DG I+I+++ L
Sbjct: 238 KDGRIRIFKITEKL 251
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 21/181 (11%)
Query: 73 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
H ++ +W PS + LA ++ + G A L GH++ ++S+SW S
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 130 ----GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC---S 182
L+AT +D + I+++ E +S L + + DV S
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKIT-----EKLSPLASEESLTNSNXFDNSADVDXDAQGRS 280
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 242
NT E + + V+ +SE ++ H+ +W++S+N G L S DD +++W
Sbjct: 281 DSNT-----EEKAELQSNLQVELLSEHDD-HNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Query: 243 A 243
A
Sbjct: 335 A 335
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
GH D V + + D A+CS D+ +++++ + W H ++
Sbjct: 9 GHDDLVHDVVY------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIV 61
Query: 79 SCAW-SPS-GKLLATASFDATTCIWEDVGGDYEC-------VATLEGHENEVKSVSWNAS 129
+ W SP G+++A+AS+D T +WE+ EC + TL + + SV + +
Sbjct: 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121
Query: 130 --GTLLATCGRDKSVWIWEVMPGNEFE 154
G LA G D + +++ + ++
Sbjct: 122 HLGLKLACLGNDGILRLYDALEPSDLR 148
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 210 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG--ADITRMQSGDGYASWRHLCTISGYH 267
++GH + + ++ G + +CS D IK++ D + + D SWR H
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWR-------AH 56
Query: 268 DRTIFSVHWSRE---GIIASGAADDSVQFFVESKD-DLIDGPSYKML--LKKEKAHDMDV 321
D +I ++ W+ IIAS + D +V+ + E D + G + L L K +
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG---SL 113
Query: 322 NSVQWSPGERRL-LASASDDGMIKIWE 347
SV+++P L LA +DG++++++
Sbjct: 114 YSVKFAPAHLGLKLACLGNDGILRLYD 140
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
N ++ + + H VWS++W T + +S D VR+W+ + S+ F C +
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGT------ILSSAGDDGKVRLWKATYSNEF-KCXS 345
Query: 68 VL 69
V+
Sbjct: 346 VI 347
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 73 HTRTVRSCAWSPS----GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
H +RS +W+PS +L+AT D I++ E ++ L E+ S ++
Sbjct: 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT----EKLSPLASEESLTNSNXFDN 268
Query: 129 SGTLLATC-GRDKS--VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
S + GR S E+ + E +S H +V V W+ T +L S D
Sbjct: 269 SADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG 328
Query: 186 TIKVWWAEDTDSDNWHCVQTIS 207
+++W A T S+ + C I+
Sbjct: 329 KVRLWKA--TYSNEFKCXSVIT 348
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNAS- 129
H V + G+ +AT S D ++ + ++E + H++ + ++ W +
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 130 -GTLLATCGRDKSVWIWEVMPGNEFEC 155
G ++A+ DK+V +WE P E EC
Sbjct: 70 YGRIIASASYDKTVKLWEEDPDQE-EC 95
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
L GH + + V+++ D+LFSCS D++ VW+ S N + T+ +GH+ TIW
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWY-----SLNGERLGTL----DGHTGTIW 78
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR 258
++ + V+ S D +IK+W + +G A+W+
Sbjct: 79 SIDVDCFTKYCVTGSADYSIKLW-----DVSNGQCVATWK 113
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 173
L GHE + V +N G LL +C +D S +W + G E + L GH + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDC 84
Query: 174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 205
+ S D +IK+W D N CV T
Sbjct: 85 FTKYCVTGSADYSIKLW-----DVSNGQCVAT 111
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 66 KAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
KA+ H R + ++ G LL + S D++ +W + G E + TL+GH + S+
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSID 81
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
+ T D S+ +W+V G +CV+ + VK V++ P + + DN
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNG---QCVATWKSPVP-VKRVEFSPCGNYFLAI-LDN 136
Query: 186 TIK 188
+K
Sbjct: 137 VMK 139
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 80 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD 139
WS GK + D + DV +YE V +++ HE + + ++ T T RD
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKY-DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Query: 140 KSVWIWEV 147
+ ++ +V
Sbjct: 240 TNSFLVDV 247
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+ TL+GHT +WS+ VD + S D ++++W+ S N + V
Sbjct: 67 LGTLDGHTGTIWSI------DVDCFTKYCVTGSADYSIKLWDVS------NGQCVATWKS 114
Query: 74 TRTVRSCAWSPSGKLLATA--------------SFDATTCIWEDVGGDYECVATLEGHE- 118
V+ +SP G + + E E + + HE
Sbjct: 115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174
Query: 119 -NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV 177
+ W+ G + +D + ++V N +E V + H + + +Q+ P +
Sbjct: 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTY 232
Query: 178 LFSCSYD 184
+ S D
Sbjct: 233 FITSSRD 239
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 28/196 (14%)
Query: 61 RFWNCKAVLEEM---HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEG 116
R WN L + H + S W+ G + + + T +W + G + E
Sbjct: 133 RLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET 192
Query: 117 HENEVKSVSWNASGTL-----------LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 165
+ + + + + G+L G +++++++ E L GH
Sbjct: 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT---EKTPTGKLIGHHGP 249
Query: 166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
+ +++++ T +L S S D T+++W + +S N C GHS +I + S+
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN--CFY-------GHSQSIVSASW-VG 299
Query: 226 GDKLVSCSDDLTIKIW 241
DK++SCS D ++++W
Sbjct: 300 DDKVISCSMDGSVRLW 315
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 110/314 (35%), Gaps = 51/314 (16%)
Query: 11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE-QSASSRFWNCKAVL 69
L+EI L D + S W P + + S + RI E ++W +
Sbjct: 39 LKEIVKL----DNIVSSTWNPLD--ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIA 92
Query: 70 EEMH-----------TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE 118
E H T V AWS G + T + +W G + L H
Sbjct: 93 ELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA---LLNVLNFHR 149
Query: 119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL 178
+ SV WN GT + + + +W V+ G + + + + + H L
Sbjct: 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN-AENHSGDGSL 208
Query: 179 FSCSYDNTIKVWWAED-----TDSDNWHCVQTISESNN-----GHSSTIWALSFNAKGDK 228
+ V W +D V I+E GH I L FN
Sbjct: 209 -------GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL 261
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAAD 288
L+S SDD T++IW G+G + C H ++I S W + + S + D
Sbjct: 262 LLSASDDGTLRIW-------HGGNGNS---QNCFYG--HSQSIVSASWVGDDKVISCSMD 309
Query: 289 DSVQFFVESKDDLI 302
SV+ + ++ L+
Sbjct: 310 GSVRLWSLKQNTLL 323
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 20/189 (10%)
Query: 13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
+I TL+GH+ V LAW+ DG+ AS D V+IW+ +S +
Sbjct: 209 QIGTLQGHSSEVCGLAWRS----DGLQ--LASGGNDNVVQIWDARSS-----IPKFTKTN 257
Query: 73 HTRTVRSCAWSP-SGKLLAT--ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA- 128
H V++ AW P LLAT + D W G V T++ ++V S+ W+
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG--ARVNTVDA-GSQVTSLIWSPH 314
Query: 129 SGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
S +++T G D ++ IW + V + H V P +L + + D +
Sbjct: 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAASDENL 373
Query: 188 KVWWAEDTD 196
K W D D
Sbjct: 374 KFWRVYDGD 382
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 65/183 (35%), Gaps = 23/183 (12%)
Query: 13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
+++T+ GH RV L+W SG ++ I R N + +
Sbjct: 168 KLRTMAGHQARVGCLSWN----------RHVLSSGSRSGAIHHHDV--RIANHQIGTLQG 215
Query: 73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGT 131
H+ V AW G LA+ D IW+ + T H VK+V+W
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSN 273
Query: 132 LLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS--YDNTI 187
LLAT G DK + W G V V + W P + S DN +
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDA----GSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 188 KVW 190
+W
Sbjct: 330 SIW 332
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD 107
D + IW S+S K V H V A SP G++L+TA+ D W GD
Sbjct: 326 DNNLSIWSYSSSGL---TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382
Query: 108 Y 108
+
Sbjct: 383 H 383
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 6/177 (3%)
Query: 81 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 140
AW+ +A + I+E G + V L+ H +V V W + TCG D+
Sbjct: 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 74
Query: 141 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 200
+ ++W + G ++ V+ + + V+W P S I + + E ++D W
Sbjct: 75 NAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWW 132
Query: 201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 257
C ST+ +L ++ L + S D +I+ A I ++ W
Sbjct: 133 VCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 13/213 (6%)
Query: 42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW 101
A C + V I+E+S + W L+E H V W+P + T D +W
Sbjct: 23 IAICPNNHEVHIYEKSGNK--WVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQ 160
G ++ + + V W + A + + I N+ + C + +
Sbjct: 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139
Query: 161 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA------EDTDSDNWHCVQTISESNNGHS 214
V + WHP +L + S D +++ A E W E S
Sbjct: 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199
Query: 215 ST---IWALSFNAKGDKLVSCSDDLTIKIWGAD 244
S+ + + F+A G ++ S D T+ + AD
Sbjct: 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 6/177 (3%)
Query: 81 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 140
AW+ +A + I+E G + V L+ H +V + W + TCG D+
Sbjct: 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDR 74
Query: 141 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 200
+ ++W + G ++ V+ + + V+W P S I + + E ++D W
Sbjct: 75 NAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWW 132
Query: 201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 257
C ST+ +L ++ L + S D +I+ A I ++ W
Sbjct: 133 VCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 13/213 (6%)
Query: 42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW 101
A C + V I+E+S + W L+E H V W+P + T D +W
Sbjct: 23 IAICPNNHEVHIYEKSGNK--WVQVHELKE-HNGQVTGIDWAPDSNRIVTCGTDRNAYVW 79
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQ 160
G ++ + + V W + A + + I N+ + C + +
Sbjct: 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139
Query: 161 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA------EDTDSDNWHCVQTISESNNGHS 214
V + WHP +L + S D +++ A E W E S
Sbjct: 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199
Query: 215 ST---IWALSFNAKGDKLVSCSDDLTIKIWGAD 244
S+ + + F+A G ++ S D T+ + AD
Sbjct: 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 160 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 219
Q H ++ +++ P+ + L S S D +K+W +D + GH +T+
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------GHRATVTD 183
Query: 220 LSFNAKGDKLVSCSDDLTIKIW 241
++ +G ++S S D TI++W
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLW 205
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 63 WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
+N + +++ H + + PSG+ L ++S D IW G TL GH V
Sbjct: 125 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVT 182
Query: 123 SVSWNASGTLLATCGRDKSVWIWEVMPG 150
++ G + + D ++ +WE G
Sbjct: 183 DIAIIDRGRNVLSASLDGTIRLWECGTG 210
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
E + H S I L F G+ L+S S D+ +KIW
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 160 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 219
Q H ++ +++ P+ + L S S D +K+W +D + GH +T+
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------GHRATVTD 186
Query: 220 LSFNAKGDKLVSCSDDLTIKIW 241
++ +G ++S S D TI++W
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLW 208
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 63 WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
+N + +++ H + + PSG+ L ++S D IW G TL GH V
Sbjct: 128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVT 185
Query: 123 SVSWNASGTLLATCGRDKSVWIWEVMPG 150
++ G + + D ++ +WE G
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECGTG 213
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
E + H S I L F G+ L+S S D+ +KIW
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%)
Query: 100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
++E G ++ T H+ V V W + TC +D++ +++E P ++ VL
Sbjct: 37 LYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96
Query: 160 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 196
+ V+W P D S I V + E +
Sbjct: 97 LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH-TRTVRSCAWSPSGKLLATA----SFD 95
+ A+ + TV+I E S +N ++ ++ + ++RS +SP G LLA A SF
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 268
Query: 96 ATTCIWEDVGGDYECVATLEGHENE-----------VKSVSWNASGTLLATCGRDKSVWI 144
T ++E G+ ++ H ++ V S+S+N SG L + G D +
Sbjct: 269 CIT-LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 327
Query: 145 WEVMPGNEFECVSVLQGHAQDVKM 168
W+V E ++ L H D+++
Sbjct: 328 WDVKTK---ERITTLNMHCDDIEI 348
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH-TRTVRSCAWSPSGKLLATA----SFD 95
+ A+ + TV+I E S +N ++ ++ + ++RS +SP G LLA A SF
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258
Query: 96 ATTCIWEDVGGDYECVATLEGHENE-----------VKSVSWNASGTLLATCGRDKSVWI 144
T ++E G+ ++ H ++ V S+S+N SG L + G D +
Sbjct: 259 CIT-LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317
Query: 145 WEVMPGNEFECVSVLQGHAQDVKM 168
W+V E ++ L H D+++
Sbjct: 318 WDVKTK---ERITTLNMHCDDIEI 338
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 24/202 (11%)
Query: 62 FWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHE 118
WN + MH + V A +P LATAS D T IW+ V G + +L H
Sbjct: 244 LWNLR-----MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HR 297
Query: 119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC----VSVLQGHAQDVKMVQ--WH 172
+ V + ++ G L T + + ++ ++++C + H Q + ++ WH
Sbjct: 298 HPVNAACFSPDGARLLTTDQKSEIRVYS---ASQWDCPLGLIPHPHRHFQHLTPIKAAWH 354
Query: 173 PTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKGD 227
P +++ Y + + + D + + + + + + SS I +L+ FN GD
Sbjct: 355 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 414
Query: 228 KLVSCSDDLTIKIWGADITRMQ 249
L S + I IW + R +
Sbjct: 415 TLAS-AMGYHILIWSQEEARTR 435
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 62 FWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHE 118
WN + MH + V A +P LATAS D T IW+ V G + +L H
Sbjct: 243 LWNLR-----MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HR 296
Query: 119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC----VSVLQGHAQDVKMVQ--WH 172
+ V + ++ G L T + + ++ ++++C + H Q + ++ WH
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYS---ASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353
Query: 173 PTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKGD 227
P +++ Y + + + D + + + + + + SS I +L+ FN GD
Sbjct: 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 413
Query: 228 KLVS 231
L S
Sbjct: 414 TLAS 417
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 62 FWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHE 118
WN + MH + V A +P LATAS D T IW+ V G + +L H
Sbjct: 243 LWNLR-----MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HR 296
Query: 119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC----VSVLQGHAQDVKMVQ--WH 172
+ V + ++ G L T + + ++ ++++C + H Q + ++ WH
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYS---ASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353
Query: 173 PTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNAKGD 227
P +++ Y + + + D + + + + + + SS I +L+ FN GD
Sbjct: 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 413
Query: 228 KLVS 231
L S
Sbjct: 414 TLAS 417
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 117 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 176
H++ V +VS +SGT + +D + +W++ + +S + HA V V P D
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA---QQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 177 -VLFSCSYDNTIKVW 190
V SCS DN I +W
Sbjct: 183 SVFLSCSEDNRILLW 197
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 114/306 (37%), Gaps = 51/306 (16%)
Query: 59 SSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC------IWEDVGGDYECVA 112
++R WN R + + + G LL AS + C +++D C A
Sbjct: 15 AAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKD-----PCAA 69
Query: 113 TLEGH-------ENEVKSVSW-NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
EG E V ++W G L+A+ +V +WE + NE VS +
Sbjct: 70 PNEGFCSAGVQTEAGVADLTWVGERGILVAS--DSGAVELWE-LDENETLIVSKFCKYEH 126
Query: 165 D--VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
D V V + S S D IKVW Q + S H++ + ++
Sbjct: 127 DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ---------QVVLSSYRAHAAQVTCVAA 177
Query: 223 NAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI 281
+ D + +SCS+D I +W + S G C+ GY T + H + +
Sbjct: 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIG-------CSAPGYLP-TSLAWHPQQSEV 229
Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 341
G + +V L+D S +L H V + +SP LAS S+D
Sbjct: 230 FVFGDENGTV--------SLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDC 280
Query: 342 MIKIWE 347
+ + +
Sbjct: 281 SLAVLD 286
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 25/237 (10%)
Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
+QT G TD +AW G+ + AS SG V +WE K E H
Sbjct: 91 VQTEAGVTD----VAWVSEKGI-----LVASDSG--AVELWEILEKESLLVNKFAKYE-H 138
Query: 74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW-NASGTL 132
V++ + G + D + +W+ + + H +EV V+ T+
Sbjct: 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWD--LSQKAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
+CG D + +W+ + V WHP D F+C D T V
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTS-VTWHPEKDDTFACG-DETGNVSLV 254
Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRM 248
+ D+ ++++ HS I L+++ L S S+D T+ + AD + +
Sbjct: 255 NIKNPDS-------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
S K +LK AH +VN V PG+ + S +DG I +W+
Sbjct: 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 43/202 (21%)
Query: 70 EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSW 126
E++H V ++P L+AT+S DAT +W+ ++ +A + HE V + +
Sbjct: 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYF 258
Query: 127 NA--SGTLLATCGRDK----SVWIWE------VMPGNEFECVSVLQGHAQDVKMVQWHPT 174
N S LL T R++ S + W + P +F+ ++ ++ WHP
Sbjct: 259 NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA--------TWHPM 310
Query: 175 MDVLFSCSYDN---------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNA 224
D++ + Y + TI ++ D+++ V + + N ++ I +L+ F+
Sbjct: 311 YDLIVAGRYPDDQLLLNDKRTIDIY-----DANSGGLVHQLRDPN---AAGIISLNKFSP 362
Query: 225 KGDKLVSCSDDLTIKIWGADIT 246
GD L S I IW + T
Sbjct: 363 TGDVLASGM-GFNILIWNREDT 383
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
KEK H V +++P L+A++S D +K+W+L N
Sbjct: 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 43/202 (21%)
Query: 70 EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSW 126
E++H V ++P L+AT+S DAT +W+ ++ +A + HE V + +
Sbjct: 199 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYF 257
Query: 127 NA--SGTLLATCGRDK----SVWIWE------VMPGNEFECVSVLQGHAQDVKMVQWHPT 174
N S LL T R++ S + W + P +F+ ++ ++ WHP
Sbjct: 258 NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA--------TWHPM 309
Query: 175 MDVLFSCSYDN---------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS-FNA 224
D++ + Y + TI ++ D+++ V + + N ++ I +L+ F+
Sbjct: 310 YDLIVAGRYPDDQLLLNDKRTIDIY-----DANSGGLVHQLRDPN---AAGIISLNKFSP 361
Query: 225 KGDKLVSCSDDLTIKIWGADIT 246
GD L S I IW + T
Sbjct: 362 TGDVLASGM-GFNILIWNREDT 382
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
KEK H V +++P L+A++S D +K+W+L N
Sbjct: 198 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 235
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVW 190
++AT G+D + IW+V G VS+L+ H ++ V +HP+ + LF+CS D ++ W
Sbjct: 251 VVATGGQDGMLSIWDVRQGT--MPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 88 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWE 146
++AT D IW DV V+ L+ HE E+ V ++ S L TC D S+W W+
Sbjct: 251 VVATGGQDGMLSIW-DVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 6 DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC 65
D + +++I+ D + L++ P + G + S + D VR WE S +
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPT-LPGNFLIAGSWAND--VRCWEVQDSGQ---T 77
Query: 66 KAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
++MHT V WS G + TAS D T +W+ +A H+ VK++
Sbjct: 78 IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---HDAPVKTIH 134
Query: 126 W--NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ 160
W + + + T DK++ W+ N + VLQ
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRSSNP---MMVLQ 168
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 173 PTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 230
PT+ + L + S+ N ++ W +D+ QTI ++ H+ + + ++ G K+
Sbjct: 50 PTLPGNFLIAGSWANDVRCWEVQDSG-------QTIPKAQQMHTGPVLDVCWSDDGSKVF 102
Query: 231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE---GIIASGAA 287
+ S D T K+W D++ Q+ HD + ++HW + + +G+
Sbjct: 103 TASCDKTAKMW--DLSSNQA-----------IQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 288 DDSVQF 293
D +++F
Sbjct: 150 DKTLKF 155
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 183
VS SGT+ A D S+ +W ++ + + ++ LQ ++ + W ++
Sbjct: 29 VSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSK-FNDLDWSHNNKIIAGALD 87
Query: 184 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWG 242
+ +++++ + + + + +++ +N HSS++ + FNAK D L S ++ I IW
Sbjct: 88 NGSLELYSTNEAN----NAINSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIFIW- 141
Query: 243 ADITR-MQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFF-VESK 298
D+ + +S Y ++S + + S+ W++ + AS + + + +++K
Sbjct: 142 -DMNKCTESPSNYTPLTPGQSMSSVDE--VISLAWNQSLAHVFASAGSSNFASIWDLKAK 198
Query: 299 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS---DDGMIKIWELAN 350
++I + ++ V+W P +A+A+ +D I IW+L N
Sbjct: 199 KEVI----HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 92/243 (37%), Gaps = 41/243 (16%)
Query: 50 TVRIWEQSASSRFWNCKAVLEEMHTRTVRSC---AWSPSGKLLATASFDATTCIWEDVGG 106
T+ IW+ +A + KA L T + +C A SP K+ + D +W+
Sbjct: 120 TLSIWDLAAPTP--RIKAEL----TSSAPACYALAISPDSKVCFSCCSDGNIAVWDL--H 171
Query: 107 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 166
+ V +GH + + + GT L T G D +V W++ G
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------------- 215
Query: 167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN---WHCVQTISESNNGHSSTIWALSFN 223
+ +Q H +FS Y T + W A +S N H + + H S + +L F
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274
Query: 224 AKGDKLVSCSDDLTIKIW----GADITRMQSGDGYASW------RHLCTISGYHDRTIFS 273
G VS D + W GA I + + S +++ T SG T++
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Query: 274 VHW 276
V +
Sbjct: 335 VIY 337
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 136
+RSC P G L +T IW+ A L +++ + + +C
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
D ++ +W++ + V QGH + L++ DNT++ W
Sbjct: 160 CSDGNIAVWDL---HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 300 DLIDGPSYKMLLKKEKAHDMD-----VNSVQWSPGERRLLASASDDGMIKIWELANTL 352
+++ P+ L K A M+ + S SPGE L + SD G+IKIW L +
Sbjct: 40 EIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII 97
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 27/134 (20%)
Query: 3 FLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD-----KTVRIWEQS 57
+ DD Y L EI +T+ V+SL VF G+ VR W++
Sbjct: 351 YKDDKLYSLHEI-----NTNDVYSL-------------VFVRLIGELQLMKSVVRTWKEE 392
Query: 58 ASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECV-ATLEG 116
+ C V+ A P+ L+ S A +WEDV Y CV A +
Sbjct: 393 DNHLASICTPVVPATPPSKGACGAAVPTAGLVGFLSHSANGSVWEDV---YRCVDANVAN 449
Query: 117 HENEVKSVSWNASG 130
E + +N G
Sbjct: 450 AERVPNGLKFNGVG 463
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 345
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 346 WEL 348
W L
Sbjct: 278 WNL 280
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 345
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 346 WEL 348
W L
Sbjct: 278 WNL 280
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 345
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 346 WEL 348
W L
Sbjct: 278 WNL 280
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKI 345
+V+FF + DD + + D + VNS+++SP + L +A DG+I
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 346 WEL 348
W L
Sbjct: 278 WNL 280
>pdb|3IF5|A Chain A, Crystal Structure Analysis Of Mglu
pdb|3IH8|A Chain A, Crystal Structure Analysis Of Mglu In Its Native Form
pdb|3IH8|B Chain B, Crystal Structure Analysis Of Mglu In Its Native Form
pdb|3IH9|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris Form
pdb|3IH9|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris Form
pdb|3IHA|A Chain A, Crystal Structure Analysis Of Mglu In Its Glutamate Form
pdb|3IHA|B Chain B, Crystal Structure Analysis Of Mglu In Its Glutamate Form
pdb|3IHB|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris And
Glutamate Form
pdb|3IHB|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris And
Glutamate Form
pdb|3AGD|A Chain A, Crystal Structure Of Mglu In Its Native Form In The
Presence Of 4.3m Nacl
pdb|3AGD|B Chain B, Crystal Structure Of Mglu In Its Native Form In The
Presence Of 4.3m Nacl
pdb|3AGE|A Chain A, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
In The Presence Of 4.3m Nacl
pdb|3AGE|B Chain B, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
In The Presence Of 4.3m Nacl
Length = 456
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 45 CSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT 98
C+GD V QSAS F A+++ R +PSG+ S +A +
Sbjct: 52 CAGDADVEFTIQSASKPFTYAAALVDRGFAAVDRQVGLNPSGEAFNELSLEAES 105
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 256 SWRHLCTISGYHDRTIFSVH-WSREGIIASGAADDSVQFF-----VESKDDLIDGPSYKM 309
W L TI G ++ I +S E IIASGA D+ +Q+ + ++ +L YK
Sbjct: 17 KWTRLTTIDG--NKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQEL---RKYKE 71
Query: 310 LLKK-EKAHDMDVNSVQWSPGE 330
++K K D +N+++ P E
Sbjct: 72 TVQKGYKIPDFVINAIRQLPRE 93
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 256 SWRHLCTISGYHDRTIFSVH-WSREGIIASGAADDSVQFF-----VESKDDLIDGPSYKM 309
W L TI G ++ I +S E IIASGA D+ +Q+ + ++ +L YK
Sbjct: 16 KWTRLTTIDG--NKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQEL---RKYKE 70
Query: 310 LLKK-EKAHDMDVNSVQWSPGE 330
++K K D +N+++ P E
Sbjct: 71 TVQKGYKIPDFVINAIRQLPRE 92
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW 101
FA+ D T+R+W+ + S +++ + V A + +G+++ + S D T +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRII-SLSLDGTLNFY 324
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE---CVSV 158
E +G D E + T+ GH + +++ N L + D + W ++ VS+
Sbjct: 325 E-LGHD-EVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQDHSNLIVSL 378
Query: 159 LQGHAQDVKMVQWHPTMDV 177
AQ+ + W T+ V
Sbjct: 379 DNSKAQEYSSISWDDTLKV 397
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 239 KIWGADITRMQSGDGY----ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 290
+I AD T QSG + A+W L I+G +R +F + I+ A D+
Sbjct: 14 QIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPILKRAVAGDA 69
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW 101
FA+ D T+R+W+ + S +++ + V A + +G++++ S D T +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIIS-LSLDGTLNFY 324
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE---CVSV 158
E +G D E + T+ GH + +++ N L + D + W ++ VS+
Sbjct: 325 E-LGHD-EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSL 378
Query: 159 LQGHAQDVKMVQWHPTMDV 177
AQ+ + W T+ V
Sbjct: 379 DNSKAQEYSSISWDDTLKV 397
>pdb|2JF6|A Chain A, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF6|B Chain B, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF7|A Chain A, Structure Of Strictosidine Glucosidase
pdb|2JF7|B Chain B, Structure Of Strictosidine Glucosidase
Length = 532
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 200 WHCVQTISESNNGHSSTIW---------ALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 250
+ C +E N G S IW +S + G++ ++C ++ DI M+
Sbjct: 56 YQCEGAYNEGNRGPS--IWDTFTQRSPAKISDGSNGNQAINC-----YHMYKEDIKIMKQ 108
Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR---EGIIASGAADDSVQFFVESKDDLI 302
G S+R FS+ WSR G +A+G D V+F+ + D+L+
Sbjct: 109 -TGLESYR-------------FSISWSRVLPGGRLAAGVNKDGVKFYHDFIDELL 149
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSV 142
++ H N VK V N G ++ATC +D ++
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGTL 203
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 158 VLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWAEDTDSDNWHCVQTISESNNGHSST 216
+++ HA VKMV+ + D++ +CS D T I+V+ +DN V+ + ++
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVF-----QTDNGVLVREFRRGLD--RTS 226
Query: 217 IWALSFNAKGDKLVSCSDDLTIKIW 241
I + ++ G KL SD T+ ++
Sbjct: 227 IIDMRWSPDGSKLAVVSDKWTLHVF 251
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 239 KIWGADITRMQSGDGY----ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 290
+I AD T QSG + A+W L I+G +R +F + I+ A D+
Sbjct: 365 QIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDA 420
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 239 KIWGADITRMQSGDGY----ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 290
+I AD T QSG + A+W L I+G +R +F + I+ A D+
Sbjct: 371 QIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDA 426
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 158 VLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWAED 194
+++ H +KMV+ + D++ +CS D T I+V+ ED
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,832,630
Number of Sequences: 62578
Number of extensions: 489560
Number of successful extensions: 2854
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1197
Number of HSP's gapped (non-prelim): 523
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)