BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018676
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 309
KR+ R NRE+AR SR +K+ + L+ RV L N+N+ L +EL+ L +
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 283 CEELQARVETLSNENRNLRDELQRLSEE----CEKLTSENNSIKEDLSRLCGPEAVANLE 338
+ELQ R + L NE R R ELQRLS E EK+ IK + P VAN+
Sbjct: 27 TQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQL---PYLVANVV 83
Query: 339 QSNPTQSCGEEENS 352
+ ++ENS
Sbjct: 84 EVMDMNEIEDKENS 97
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 35.4 bits (80), Expect = 0.043, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
KR+ R++ N+ +A +SR R++ + LQA + L +E L+ E+ L +E EKL
Sbjct: 1 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 55
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
KR+ R++ N+ +A + R R++ + LQA + L +E L+ E+ L +E EKL
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
KR+K + NR +A RSR +++ + L+ + E LS+ N L+ E+ L E +L
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55
>pdb|1DEB|A Chain A, Crystal Structure Of The N-Terminal Coiled Coil Domain
From Apc
pdb|1DEB|B Chain B, Crystal Structure Of The N-Terminal Coiled Coil Domain
From Apc
Length = 54
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331
A ++L +VE L EN NLR EL+ S KL +E +++KE L +L G
Sbjct: 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGS 53
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
N E+ARRSR RK ++L+ +VE L ++N +L +E+ RL
Sbjct: 17 NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
N E+ARRSR RK ++L+ +VE L ++N +L +E+ RL
Sbjct: 16 NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 55
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
N E+ARRSR RK ++L+ +VE L ++N +L +E+ RL
Sbjct: 12 NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 51
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
N E+ARRSR RK ++L+ +VE L ++N +L +E+ RL
Sbjct: 11 NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 50
>pdb|2W6A|A Chain A, X-Ray Structure Of The Dimeric Git1 Coiled-Coil Domain
pdb|2W6A|B Chain B, X-Ray Structure Of The Dimeric Git1 Coiled-Coil Domain
Length = 63
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323
+A+V+ L N +L DEL++L E KL +EN +++
Sbjct: 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62
>pdb|2E42|A Chain A, Crystal Structure Of CEBPBETA BZIP HOMODIMER V285A MUTANT
Bound To A High Affinity Dna Fragment
pdb|2E42|B Chain B, Crystal Structure Of CEBPBETA BZIP HOMODIMER V285A MUTANT
Bound To A High Affinity Dna Fragment
Length = 78
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
D+ + + R++ N +AR+SR + + E Q +V L+ EN L+ ++++LS E L
Sbjct: 10 DKHSDEYKIRRERNNIAARKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
>pdb|1CI6|B Chain B, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
++ + R++ N + R+SR + + E Q +V L+ EN L+ ++++LS E L
Sbjct: 1 MEYKMRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 56
>pdb|1HJB|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|E Chain E, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
Length = 87
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
D+ + + R++ N + R+SR + + E Q +V L+ EN L+ ++++LS E L
Sbjct: 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
Query: 315 TSENNSIKEDL 325
+ + E L
Sbjct: 70 RNLFKQLPEPL 80
>pdb|2JEE|A Chain A, Xray Structure Of E. Coli Yiiu
pdb|2JEE|B Chain B, Xray Structure Of E. Coli Yiiu
pdb|2JEE|C Chain C, Xray Structure Of E. Coli Yiiu
pdb|2JEE|D Chain D, Xray Structure Of E. Coli Yiiu
Length = 81
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323
LQ +E L +N +L E+Q + E+L ENN +KE
Sbjct: 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62
>pdb|1IO4|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1IO4|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1H88|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H88|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H8A|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex3
pdb|1H8A|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex3
pdb|1GU4|A Chain A, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
High Affinity Dna Fragment
pdb|1GU4|B Chain B, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
High Affinity Dna Fragment
pdb|1GU5|A Chain A, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Mim-1 Promoter
pdb|1GU5|B Chain B, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Mim-1 Promoter
pdb|1GTW|A Chain A, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Tom-1a Promoter
pdb|1GTW|B Chain B, Crystal Structure Of CEBPBETA BZIP DIMERIC BOUND TO A
Dna Fragment From The Tom-1a Promoter
Length = 78
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
D+ + + R++ N + R+SR + + E Q +V L+ EN L+ ++++LS E L
Sbjct: 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
>pdb|1H89|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex2
pdb|1H89|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 64
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
R++ N + R+SR + + E Q +V L+ EN L+ ++++LS E L
Sbjct: 5 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 55
>pdb|2E43|A Chain A, Crystal Structure Of CEBPBETA BZIP HOMODIMER K269A MUTANT
Bound To A High Affinity Dna Fragment
pdb|2E43|B Chain B, Crystal Structure Of CEBPBETA BZIP HOMODIMER K269A MUTANT
Bound To A High Affinity Dna Fragment
Length = 78
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
R++ N + R+SR + + E Q +V L+ EN L+ ++++LS E L
Sbjct: 19 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69
>pdb|1GD2|E Chain E, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|F Chain F, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|G Chain G, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|H Chain H, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|I Chain I, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|J Chain J, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
Length = 70
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 263 KRKQSNRESARRSRLRKQAECEELQARVETLSN-------ENRNLRDELQRLSEE 310
KRK NR + R R RK+ + L+ +V TL EN LR ++++L EE
Sbjct: 11 KRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65
>pdb|1NKN|A Chain A, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|1NKN|B Chain B, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|1NKN|C Chain C, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|1NKN|D Chain D, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|3BAS|A Chain A, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (C2) Form
pdb|3BAS|B Chain B, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (C2) Form
pdb|3BAT|A Chain A, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
pdb|3BAT|B Chain B, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
pdb|3BAT|C Chain C, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
pdb|3BAT|D Chain D, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
Length = 89
Score = 28.1 bits (61), Expect = 8.1, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 254 QDERELKRQKRK--QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311
+ E E+K Q ++ + + A+ R++K EL+ + TL + +L +++L ++
Sbjct: 11 RQEEEMKEQLKQMDKMKEDLAKTERIKK-----ELEEQNVTLLEQKNDLFGSMKQLEDKV 65
Query: 312 EKLTSENNSIKEDLSRL 328
E+L S+N ++ +++RL
Sbjct: 66 EELLSKNYHLENEVARL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,608,313
Number of Sequences: 62578
Number of extensions: 293745
Number of successful extensions: 674
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 59
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)