Query 018676
Match_columns 352
No_of_seqs 218 out of 1153
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 4.7E-14 1.6E-18 104.8 6.3 53 260-312 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.4 1.6E-12 5.6E-17 98.6 10.4 58 260-317 2-59 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 1.9E-12 6.6E-17 97.4 9.3 57 260-316 1-57 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.3 1.6E-12 5.4E-17 98.3 7.0 57 260-316 1-57 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 6.3E-12 2.1E-16 95.7 6.8 52 261-312 10-61 (63)
6 1ci6_A Transcription factor AT 99.2 3.3E-11 1.1E-15 91.6 7.6 57 259-315 1-57 (63)
7 1gd2_E Transcription factor PA 99.2 9.8E-11 3.4E-15 91.0 8.4 61 262-322 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 98.9 2.4E-09 8.3E-14 86.4 8.6 61 261-321 16-76 (87)
9 1gu4_A CAAT/enhancer binding p 98.9 6.9E-09 2.4E-13 82.1 8.4 55 261-315 16-70 (78)
10 3a5t_A Transcription factor MA 98.8 1.1E-10 3.7E-15 97.5 -3.6 63 253-315 30-92 (107)
11 2wt7_B Transcription factor MA 98.6 3.7E-07 1.3E-11 74.0 9.9 69 254-329 21-89 (90)
12 2oqq_A Transcription factor HY 97.0 0.0012 4.2E-08 46.2 5.6 36 280-315 2-37 (42)
13 1deb_A APC protein, adenomatou 96.9 0.0036 1.2E-07 45.6 7.2 48 283-330 5-52 (54)
14 1skn_P DNA-binding domain of S 96.8 0.00045 1.6E-08 55.8 2.4 32 257-288 59-90 (92)
15 2jee_A YIIU; FTSZ, septum, coi 96.6 0.0071 2.4E-07 48.1 7.6 55 282-338 21-75 (81)
16 3s9g_A Protein hexim1; cyclin 96.2 0.016 5.3E-07 47.7 7.6 49 281-329 37-92 (104)
17 2jee_A YIIU; FTSZ, septum, coi 96.0 0.024 8.3E-07 45.0 7.7 53 279-331 25-77 (81)
18 3hnw_A Uncharacterized protein 95.9 0.035 1.2E-06 47.8 8.8 52 278-329 72-123 (138)
19 2w6a_A ARF GTPase-activating p 95.5 0.054 1.8E-06 40.7 7.4 39 285-323 24-62 (63)
20 2c9l_Y EB1, zebra, BZLF1 trans 95.5 0.068 2.3E-06 39.6 7.8 55 263-338 4-58 (63)
21 1go4_E MAD1 (mitotic arrest de 95.4 0.047 1.6E-06 44.9 7.3 25 306-330 72-96 (100)
22 3vmx_A Voltage-gated hydrogen 95.3 0.068 2.3E-06 38.5 7.0 41 287-327 3-43 (48)
23 3oja_B Anopheles plasmodium-re 95.1 0.21 7.1E-06 50.2 12.8 48 282-329 531-578 (597)
24 3a7p_A Autophagy protein 16; c 95.0 0.26 8.8E-06 43.3 11.5 78 255-332 63-140 (152)
25 3a2a_A Voltage-gated hydrogen 95.0 0.057 2E-06 40.0 6.1 41 287-327 10-50 (58)
26 3m48_A General control protein 94.9 0.026 8.9E-07 37.6 3.7 28 282-309 1-28 (33)
27 3oja_B Anopheles plasmodium-re 94.8 0.14 4.6E-06 51.6 10.6 8 334-341 574-581 (597)
28 2oxj_A Hybrid alpha/beta pepti 94.8 0.036 1.2E-06 37.1 4.1 28 282-309 2-29 (34)
29 3he5_A Synzip1; heterodimeric 94.5 0.16 5.5E-06 35.7 7.1 45 282-326 4-48 (49)
30 1kd8_B GABH BLL, GCN4 acid bas 94.2 0.079 2.7E-06 35.9 4.8 30 282-311 2-31 (36)
31 3hnw_A Uncharacterized protein 94.1 0.3 1E-05 41.9 9.7 48 281-328 82-129 (138)
32 2wt7_B Transcription factor MA 94.1 0.45 1.5E-05 38.4 10.0 54 273-329 29-82 (90)
33 3cvf_A Homer-3, homer protein 94.1 0.087 3E-06 41.6 5.7 48 282-329 7-54 (79)
34 1uii_A Geminin; human, DNA rep 94.1 0.25 8.7E-06 39.3 8.3 34 295-328 46-79 (83)
35 3efg_A Protein SLYX homolog; x 94.0 0.14 4.7E-06 40.2 6.6 50 281-330 14-63 (78)
36 3c3f_A Alpha/beta peptide with 94.0 0.067 2.3E-06 35.8 4.1 28 282-309 2-29 (34)
37 1kd8_A GABH AIV, GCN4 acid bas 93.8 0.072 2.5E-06 36.1 4.0 30 282-311 2-31 (36)
38 3mq7_A Bone marrow stromal ant 93.6 0.29 1E-05 41.3 8.3 42 287-328 70-111 (121)
39 3c3g_A Alpha/beta peptide with 93.6 0.09 3.1E-06 35.0 4.1 27 283-309 2-28 (33)
40 2zxx_A Geminin; coiled-coil, c 93.6 0.18 6.2E-06 39.8 6.6 34 295-328 34-67 (79)
41 3m91_A Proteasome-associated A 93.5 0.29 9.8E-06 35.6 7.1 39 283-321 11-49 (51)
42 1t6f_A Geminin; coiled-coil, c 93.5 0.11 3.7E-06 35.3 4.5 30 294-323 6-35 (37)
43 1hjb_A Ccaat/enhancer binding 93.5 0.53 1.8E-05 37.7 9.3 31 282-312 44-74 (87)
44 1t2k_D Cyclic-AMP-dependent tr 93.4 0.49 1.7E-05 34.9 8.4 38 288-325 22-59 (61)
45 2bni_A General control protein 93.3 0.098 3.3E-06 35.1 3.9 28 282-309 2-29 (34)
46 3m9b_A Proteasome-associated A 93.3 0.071 2.4E-06 50.3 4.5 41 282-322 55-95 (251)
47 1gu4_A CAAT/enhancer binding p 93.2 0.7 2.4E-05 36.2 9.4 27 282-308 44-70 (78)
48 3m91_A Proteasome-associated A 93.2 0.34 1.2E-05 35.2 7.1 43 287-329 8-50 (51)
49 1uo4_A General control protein 93.2 0.1 3.5E-06 35.0 3.9 28 282-309 2-29 (34)
50 2yy0_A C-MYC-binding protein; 93.2 0.15 5E-06 37.3 5.1 30 298-327 22-51 (53)
51 3cve_A Homer protein homolog 1 93.0 0.29 1E-05 38.0 6.9 46 284-329 3-48 (72)
52 2wt7_A Proto-oncogene protein 93.0 0.9 3.1E-05 33.7 9.4 36 290-325 25-60 (63)
53 2hy6_A General control protein 92.9 0.12 4.2E-06 34.6 3.9 28 282-309 2-29 (34)
54 2kz5_A Transcription factor NF 92.7 0.009 3.1E-07 48.3 -2.1 25 257-281 63-87 (91)
55 2wq1_A General control protein 92.6 0.15 5.1E-06 33.9 4.1 27 283-309 2-28 (33)
56 4h22_A Leucine-rich repeat fli 92.6 0.47 1.6E-05 39.1 8.0 47 281-327 37-83 (103)
57 2v66_B Nuclear distribution pr 92.5 0.24 8.3E-06 41.4 6.3 47 283-329 37-83 (111)
58 2wvr_A Geminin; DNA replicatio 92.5 0.33 1.1E-05 44.4 7.6 27 296-322 116-142 (209)
59 2yy0_A C-MYC-binding protein; 92.3 0.25 8.7E-06 36.0 5.3 32 288-319 19-50 (53)
60 2oqq_A Transcription factor HY 92.1 0.5 1.7E-05 33.1 6.4 35 291-325 6-40 (42)
61 1gd2_E Transcription factor PA 92.1 0.84 2.9E-05 35.1 8.4 38 288-325 29-66 (70)
62 2dfs_A Myosin-5A; myosin-V, in 92.0 0.9 3.1E-05 50.4 11.8 15 314-328 1028-1042(1080)
63 1fmh_A General control protein 91.5 0.23 7.9E-06 32.3 3.9 30 282-311 2-31 (33)
64 4etp_A Kinesin-like protein KA 91.4 0.6 2.1E-05 46.3 8.7 53 279-331 8-60 (403)
65 1nkp_B MAX protein, MYC proto- 91.3 0.77 2.6E-05 35.5 7.6 34 297-330 49-82 (83)
66 2dgc_A Protein (GCN4); basic d 91.2 0.89 3.1E-05 34.0 7.5 37 290-326 25-61 (63)
67 2xdj_A Uncharacterized protein 91.2 1.8 6.3E-05 34.2 9.7 58 282-339 21-78 (83)
68 3u06_A Protein claret segregat 91.1 0.65 2.2E-05 46.3 8.6 52 280-331 9-60 (412)
69 2v71_A Nuclear distribution pr 91.0 0.58 2E-05 42.4 7.5 6 334-339 111-116 (189)
70 3i00_A HIP-I, huntingtin-inter 90.6 2.8 9.6E-05 35.2 10.9 47 275-321 34-80 (120)
71 3m9b_A Proteasome-associated A 90.6 0.26 8.8E-06 46.5 5.0 55 287-341 53-108 (251)
72 1wt6_A Myotonin-protein kinase 90.4 3 0.0001 33.0 10.1 60 268-330 14-73 (81)
73 1jnm_A Proto-oncogene C-JUN; B 90.2 1.9 6.6E-05 31.7 8.5 33 296-328 23-55 (62)
74 1am9_A Srebp-1A, protein (ster 89.9 3.3 0.00011 32.1 10.1 66 263-328 5-76 (82)
75 3q8t_A Beclin-1; autophagy, AT 89.7 1.5 5.1E-05 35.3 8.2 27 281-307 25-51 (96)
76 3nmd_A CGMP dependent protein 89.6 1.5 5.2E-05 34.0 7.7 28 280-307 39-66 (72)
77 3efg_A Protein SLYX homolog; x 89.6 1.1 3.7E-05 35.0 7.0 55 284-340 10-64 (78)
78 1wlq_A Geminin; coiled-coil; 2 89.5 1.5 5.1E-05 34.9 7.8 34 295-328 38-71 (83)
79 3htk_A Structural maintenance 89.5 2.4 8.4E-05 30.5 8.5 48 279-326 10-57 (60)
80 2w83_C C-JUN-amino-terminal ki 89.4 0.59 2E-05 36.7 5.3 42 285-326 34-75 (77)
81 1nkp_A C-MYC, MYC proto-oncoge 89.3 1.8 6.3E-05 34.2 8.3 35 296-330 53-87 (88)
82 2r2v_A GCN4 leucine zipper; co 89.3 0.49 1.7E-05 31.7 4.1 28 282-309 2-29 (34)
83 3iv1_A Tumor susceptibility ge 89.2 4.8 0.00017 31.6 10.4 53 277-329 21-73 (78)
84 1a93_B MAX protein, coiled coi 89.2 0.64 2.2E-05 31.2 4.6 29 300-328 5-33 (34)
85 2v4h_A NF-kappa-B essential mo 89.1 3.7 0.00013 34.2 10.2 63 266-328 30-102 (110)
86 1ci6_A Transcription factor AT 88.8 1.4 4.7E-05 32.9 6.8 43 285-327 20-62 (63)
87 1dh3_A Transcription factor CR 88.8 1.4 4.7E-05 32.1 6.6 26 304-329 24-49 (55)
88 2dfs_A Myosin-5A; myosin-V, in 88.7 1.5 5.2E-05 48.6 10.0 40 285-324 981-1020(1080)
89 2eqb_B RAB guanine nucleotide 88.1 2.5 8.4E-05 34.5 8.4 24 305-328 72-95 (97)
90 2j5u_A MREC protein; bacterial 88.0 0.22 7.6E-06 46.4 2.5 39 286-328 24-62 (255)
91 1gmj_A ATPase inhibitor; coile 87.9 4 0.00014 32.5 9.3 26 303-328 52-77 (84)
92 3o0z_A RHO-associated protein 87.7 7.1 0.00024 34.7 11.8 57 266-329 75-131 (168)
93 1ic2_A Tropomyosin alpha chain 87.6 2.9 9.9E-05 32.3 8.3 47 281-327 20-66 (81)
94 1nkp_B MAX protein, MYC proto- 87.4 0.69 2.3E-05 35.8 4.6 27 282-308 48-74 (83)
95 2v66_B Nuclear distribution pr 87.1 7.8 0.00027 32.2 11.0 22 307-328 40-61 (111)
96 3s9g_A Protein hexim1; cyclin 86.8 3.7 0.00013 33.7 8.7 28 280-307 64-91 (104)
97 3u1c_A Tropomyosin alpha-1 cha 86.7 11 0.00038 30.3 12.2 23 277-299 40-62 (101)
98 1nlw_A MAD protein, MAX dimeri 86.5 1.2 4.3E-05 34.6 5.6 27 300-326 52-78 (80)
99 3jsv_C NF-kappa-B essential mo 86.4 5.8 0.0002 32.2 9.6 75 265-341 7-84 (94)
100 3ghg_A Fibrinogen alpha chain; 86.4 1.4 4.9E-05 45.4 7.4 39 283-321 112-150 (562)
101 4ani_A Protein GRPE; chaperone 86.2 1.4 4.8E-05 40.5 6.6 60 283-342 61-120 (213)
102 1ic2_A Tropomyosin alpha chain 86.0 10 0.00035 29.2 11.7 61 268-328 14-74 (81)
103 3he5_B Synzip2; heterodimeric 85.9 3.3 0.00011 29.3 6.9 33 290-322 12-44 (52)
104 2xv5_A Lamin-A/C; structural p 85.9 4.3 0.00015 31.4 8.3 47 282-328 6-52 (74)
105 2lw1_A ABC transporter ATP-bin 85.9 2.3 7.9E-05 33.4 7.0 26 280-305 21-46 (89)
106 3htk_A Structural maintenance 85.9 4.8 0.00016 29.0 8.2 47 283-329 7-53 (60)
107 2w83_C C-JUN-amino-terminal ki 85.8 3.4 0.00012 32.3 7.7 44 285-328 6-56 (77)
108 1jcd_A Major outer membrane li 85.7 4.4 0.00015 29.5 7.8 44 282-325 5-48 (52)
109 1dip_A Delta-sleep-inducing pe 85.7 0.46 1.6E-05 37.1 2.7 43 295-341 15-57 (78)
110 3u59_A Tropomyosin beta chain; 85.6 3.8 0.00013 32.9 8.3 21 278-298 41-61 (101)
111 3u1c_A Tropomyosin alpha-1 cha 85.4 13 0.00044 29.9 12.4 45 282-326 24-68 (101)
112 3o0z_A RHO-associated protein 85.4 5.1 0.00017 35.6 9.6 49 276-326 31-79 (168)
113 4etp_A Kinesin-like protein KA 85.2 1.4 4.8E-05 43.6 6.6 48 279-326 15-62 (403)
114 4h22_A Leucine-rich repeat fli 85.2 2.7 9.2E-05 34.7 7.2 51 281-331 30-80 (103)
115 3nmd_A CGMP dependent protein 85.2 1.5 5.1E-05 34.0 5.3 45 285-329 23-67 (72)
116 2v71_A Nuclear distribution pr 85.0 13 0.00045 33.5 12.3 11 292-302 99-109 (189)
117 3a7o_A Autophagy protein 16; c 84.9 4 0.00014 31.6 7.6 46 284-329 28-73 (75)
118 3mq7_A Bone marrow stromal ant 84.9 4.7 0.00016 34.0 8.6 44 285-328 61-104 (121)
119 2xdj_A Uncharacterized protein 84.8 4.9 0.00017 31.7 8.4 41 277-317 23-63 (83)
120 4dzn_A Coiled-coil peptide CC- 84.8 1.9 6.6E-05 28.0 4.8 25 298-322 5-29 (33)
121 3a7p_A Autophagy protein 16; c 84.6 7.3 0.00025 34.1 10.1 35 282-316 97-131 (152)
122 3cve_A Homer protein homolog 1 84.6 3.9 0.00013 31.7 7.4 45 284-328 24-68 (72)
123 4emc_A Monopolin complex subun 84.4 1.7 5.9E-05 39.3 6.2 25 292-316 24-48 (190)
124 3oja_A Leucine-rich immune mol 84.2 9 0.00031 37.6 12.0 8 302-309 442-449 (487)
125 3oja_A Leucine-rich immune mol 84.2 8.3 0.00028 37.8 11.7 21 306-326 439-459 (487)
126 3cvf_A Homer-3, homer protein 83.6 4.3 0.00015 31.9 7.4 45 284-328 30-74 (79)
127 2fxo_A Myosin heavy chain, car 83.5 13 0.00045 30.9 11.0 45 284-328 65-109 (129)
128 3mq9_A Bone marrow stromal ant 83.3 8.9 0.0003 37.5 11.4 24 304-327 445-468 (471)
129 4b4t_K 26S protease regulatory 83.3 1.9 6.5E-05 43.0 6.7 47 284-330 45-91 (428)
130 2ve7_C Kinetochore protein NUF 83.3 1.6 5.5E-05 40.7 5.7 58 260-317 120-184 (250)
131 3na7_A HP0958; flagellar bioge 83.2 12 0.00042 34.3 11.7 18 286-303 95-112 (256)
132 1gk6_A Vimentin; intermediate 83.2 3.2 0.00011 30.5 6.2 47 283-329 2-48 (59)
133 3qne_A Seryl-tRNA synthetase, 83.0 12 0.00039 38.3 12.3 53 276-328 42-104 (485)
134 1nkp_A C-MYC, MYC proto-oncoge 82.9 2.4 8.3E-05 33.5 5.9 32 281-312 52-83 (88)
135 3swy_A Cyclic nucleotide-gated 82.7 5.3 0.00018 28.4 6.9 42 285-329 2-43 (46)
136 1joc_A EEA1, early endosomal a 82.6 8.3 0.00028 32.1 9.4 48 281-328 11-58 (125)
137 1lwu_C Fibrinogen gamma chain; 82.5 2.8 9.7E-05 40.6 7.3 48 281-328 12-59 (323)
138 3ra3_B P2F; coiled coil domain 82.5 1 3.6E-05 28.3 2.8 22 292-313 4-25 (28)
139 1g6u_A Domain swapped dimer; d 82.5 5.3 0.00018 27.9 6.6 27 303-329 21-47 (48)
140 2wuj_A Septum site-determining 82.4 1.2 4.3E-05 32.5 3.7 29 281-309 27-55 (57)
141 1gmj_A ATPase inhibitor; coile 82.3 9.4 0.00032 30.4 9.0 26 296-321 52-77 (84)
142 3trt_A Vimentin; cytoskeleton, 82.3 14 0.00047 27.8 11.0 57 263-322 20-76 (77)
143 3q8t_A Beclin-1; autophagy, AT 82.2 18 0.0006 29.0 12.4 65 264-328 29-93 (96)
144 3na7_A HP0958; flagellar bioge 82.2 8.7 0.0003 35.3 10.3 46 281-326 32-77 (256)
145 3ghg_A Fibrinogen alpha chain; 82.2 2.4 8.3E-05 43.7 7.0 41 299-341 114-154 (562)
146 1x8y_A Lamin A/C; structural p 81.6 16 0.00055 28.5 10.2 51 279-329 26-76 (86)
147 1wt6_A Myotonin-protein kinase 81.5 7.1 0.00024 30.9 7.9 40 278-317 35-74 (81)
148 3s4r_A Vimentin; alpha-helix, 81.3 18 0.00063 28.7 10.6 32 295-326 56-87 (93)
149 1gk4_A Vimentin; intermediate 80.9 18 0.0006 28.1 11.4 53 277-329 22-74 (84)
150 2ve7_C Kinetochore protein NUF 80.7 0.76 2.6E-05 42.9 2.5 36 290-325 143-178 (250)
151 3bbp_D GRIP and coiled-coil do 80.6 1.2 4.2E-05 34.3 3.2 46 284-329 18-63 (71)
152 2fxo_A Myosin heavy chain, car 80.3 18 0.00061 30.1 10.6 44 285-328 80-123 (129)
153 1wle_A Seryl-tRNA synthetase; 80.2 12 0.00042 38.1 11.4 30 299-328 120-149 (501)
154 3tnu_A Keratin, type I cytoske 80.2 24 0.00082 29.3 11.4 48 281-328 77-124 (131)
155 2dq0_A Seryl-tRNA synthetase; 80.1 7.7 0.00026 38.9 9.8 29 300-328 74-102 (455)
156 3u59_A Tropomyosin beta chain; 79.7 22 0.00074 28.4 12.2 46 281-326 23-68 (101)
157 1go4_E MAD1 (mitotic arrest de 79.6 3.7 0.00013 33.6 6.0 30 282-311 13-42 (100)
158 3i00_A HIP-I, huntingtin-inter 79.6 12 0.00042 31.3 9.3 47 283-329 35-81 (120)
159 3bas_A Myosin heavy chain, str 79.4 21 0.00071 28.0 12.2 52 278-329 32-83 (89)
160 3he5_B Synzip2; heterodimeric 79.3 6.5 0.00022 27.8 6.3 24 286-309 22-45 (52)
161 1nlw_A MAD protein, MAX dimeri 79.0 4.5 0.00015 31.4 6.1 34 280-313 46-79 (80)
162 3tnu_B Keratin, type II cytosk 79.0 26 0.0009 29.0 11.4 46 283-328 77-122 (129)
163 1jcd_A Major outer membrane li 79.0 7.6 0.00026 28.2 6.9 41 288-328 4-44 (52)
164 2v4h_A NF-kappa-B essential mo 78.7 27 0.00093 29.0 11.0 48 281-328 62-109 (110)
165 1am9_A Srebp-1A, protein (ster 78.6 3 0.0001 32.3 5.0 27 281-307 50-76 (82)
166 3swf_A CGMP-gated cation chann 78.2 5.3 0.00018 31.1 6.1 43 284-329 3-45 (74)
167 2oxj_A Hybrid alpha/beta pepti 77.8 4.6 0.00016 27.0 4.8 27 299-325 5-31 (34)
168 1a93_B MAX protein, coiled coi 77.7 3.4 0.00012 27.7 4.2 26 295-320 7-32 (34)
169 3trt_A Vimentin; cytoskeleton, 77.7 17 0.00058 27.3 9.0 44 287-330 34-77 (77)
170 1wlq_A Geminin; coiled-coil; 2 77.7 13 0.00045 29.5 8.4 44 282-329 39-82 (83)
171 3u06_A Protein claret segregat 77.2 4.2 0.00014 40.4 6.8 46 281-326 17-62 (412)
172 1ses_A Seryl-tRNA synthetase; 76.5 27 0.00092 34.6 12.4 31 298-328 67-97 (421)
173 1wle_A Seryl-tRNA synthetase; 76.2 21 0.00073 36.3 11.8 62 280-343 83-155 (501)
174 2eqb_B RAB guanine nucleotide 76.1 30 0.001 28.1 12.2 46 283-328 14-59 (97)
175 4ati_A MITF, microphthalmia-as 76.0 7.9 0.00027 32.1 7.1 70 260-329 23-111 (118)
176 2ve7_A Kinetochore protein HEC 75.7 3.6 0.00012 39.4 5.6 28 289-316 186-213 (315)
177 1uix_A RHO-associated kinase; 75.5 7.8 0.00027 29.9 6.4 30 286-315 2-31 (71)
178 3mq9_A Bone marrow stromal ant 75.5 32 0.0011 33.5 12.5 30 300-329 434-463 (471)
179 1fmh_B General control protein 75.2 5.1 0.00017 26.0 4.4 30 282-311 2-31 (33)
180 3mov_A Lamin-B1; LMNB1, B-type 74.5 25 0.00085 28.1 9.5 49 281-329 37-85 (95)
181 3qh9_A Liprin-beta-2; coiled-c 74.5 17 0.00057 28.8 8.1 37 280-316 25-61 (81)
182 3s4r_A Vimentin; alpha-helix, 74.2 31 0.0011 27.4 10.1 33 281-313 56-88 (93)
183 1fzc_C Fibrin; blood coagulati 74.2 1.2 4.1E-05 43.2 1.9 48 281-328 4-51 (319)
184 1m1j_C Fibrinogen gamma chain; 73.9 1.6 5.3E-05 43.7 2.7 40 284-323 94-133 (409)
185 1s1c_X RHO-associated, coiled- 73.7 9.9 0.00034 29.3 6.5 43 285-327 3-46 (71)
186 1kd8_B GABH BLL, GCN4 acid bas 73.7 7.6 0.00026 26.2 5.1 28 299-326 5-32 (36)
187 1p9i_A Cortexillin I/GCN4 hybr 73.5 4.7 0.00016 25.9 3.9 22 286-307 4-25 (31)
188 3lay_A Zinc resistance-associa 73.4 29 0.00098 30.7 10.5 18 303-320 114-131 (175)
189 2xzr_A Immunoglobulin-binding 72.7 38 0.0013 27.8 11.2 66 263-328 34-102 (114)
190 1ik9_A DNA repair protein XRCC 72.7 9.5 0.00033 34.8 7.4 25 283-307 141-165 (213)
191 3oa7_A Head morphogenesis prot 72.5 12 0.00042 34.1 7.9 43 290-332 32-74 (206)
192 2xv5_A Lamin-A/C; structural p 72.4 23 0.00079 27.2 8.5 53 274-326 5-57 (74)
193 2oto_A M protein; helical coil 72.2 15 0.00053 31.3 8.3 32 283-314 52-83 (155)
194 1zxa_A CGMP-dependent protein 71.9 5.6 0.00019 30.4 4.8 35 277-311 21-55 (67)
195 3a5t_A Transcription factor MA 71.9 0.51 1.7E-05 39.2 -1.1 33 296-328 59-91 (107)
196 3a2a_A Voltage-gated hydrogen 71.8 11 0.00039 27.8 6.1 26 283-308 20-45 (58)
197 4b4t_K 26S protease regulatory 71.7 6.8 0.00023 39.0 6.7 43 281-323 49-91 (428)
198 4e61_A Protein BIM1; EB1-like 71.3 16 0.00056 30.1 7.8 32 281-312 11-42 (106)
199 4emc_A Monopolin complex subun 71.2 13 0.00044 33.7 7.7 32 282-313 28-59 (190)
200 3ra3_A P1C; coiled coil domain 71.0 2.8 9.5E-05 26.4 2.3 23 292-314 4-26 (28)
201 1dip_A Delta-sleep-inducing pe 71.0 2.5 8.7E-05 33.0 2.7 25 283-307 17-41 (78)
202 2oa5_A Hypothetical protein BQ 70.8 2.3 7.7E-05 35.5 2.5 26 281-306 8-33 (110)
203 3lss_A Seryl-tRNA synthetase; 70.7 26 0.00088 35.7 10.8 24 304-327 113-136 (484)
204 3w03_C DNA repair protein XRCC 70.5 8.2 0.00028 34.7 6.3 31 282-312 146-176 (184)
205 3c3g_A Alpha/beta peptide with 70.1 9.4 0.00032 25.4 4.8 27 299-325 4-30 (33)
206 4ath_A MITF, microphthalmia-as 70.1 7.7 0.00026 30.8 5.3 22 286-307 54-75 (83)
207 3iv1_A Tumor susceptibility ge 69.9 37 0.0013 26.5 9.5 50 280-329 17-66 (78)
208 1lwu_C Fibrinogen gamma chain; 69.8 10 0.00036 36.7 7.3 29 281-309 26-54 (323)
209 1p9i_A Cortexillin I/GCN4 hybr 69.8 4.4 0.00015 26.0 3.1 23 307-329 4-26 (31)
210 3ol1_A Vimentin; structural ge 69.7 45 0.0015 27.4 12.5 38 291-328 65-102 (119)
211 3hhm_B NISH2 P85alpha; PI3KCA, 69.5 16 0.00054 35.9 8.7 53 277-329 201-253 (373)
212 2ocy_A RAB guanine nucleotide 69.5 40 0.0014 29.4 10.3 25 306-330 105-129 (154)
213 3viq_B Mating-type switching p 69.5 28 0.00097 27.6 8.5 51 280-330 7-69 (85)
214 2lz1_A Nuclear factor erythroi 69.4 0.08 2.7E-06 42.7 -6.3 23 258-280 64-86 (90)
215 2wvr_A Geminin; DNA replicatio 69.4 35 0.0012 31.2 10.2 46 281-330 115-160 (209)
216 3qh9_A Liprin-beta-2; coiled-c 69.2 16 0.00056 28.8 7.0 39 288-326 19-57 (81)
217 3uux_B Mitochondrial division 69.2 18 0.0006 33.9 8.4 51 280-330 176-226 (242)
218 3m48_A General control protein 69.2 7.2 0.00025 25.9 4.1 25 300-324 5-29 (33)
219 1hlo_A Protein (transcription 68.9 11 0.00038 28.8 6.0 22 271-292 19-40 (80)
220 1gk7_A Vimentin; intermediate 68.7 10 0.00035 25.8 5.1 26 302-327 13-38 (39)
221 2zqm_A Prefoldin beta subunit 68.5 18 0.0006 28.7 7.4 41 290-330 72-112 (117)
222 1kd8_A GABH AIV, GCN4 acid bas 68.4 12 0.0004 25.3 5.1 28 299-326 5-32 (36)
223 3vkg_A Dynein heavy chain, cyt 68.0 21 0.00072 44.2 10.9 34 293-326 2033-2066(3245)
224 2fic_A Bridging integrator 1; 67.9 21 0.00071 31.9 8.6 11 318-328 199-209 (251)
225 3w03_C DNA repair protein XRCC 67.7 14 0.00046 33.3 7.1 32 280-311 151-182 (184)
226 3bas_A Myosin heavy chain, str 67.7 32 0.0011 26.9 8.6 43 283-325 44-86 (89)
227 1zme_C Proline utilization tra 67.7 5.3 0.00018 28.9 3.8 24 281-304 44-67 (70)
228 3c3f_A Alpha/beta peptide with 67.1 12 0.0004 25.0 4.8 27 299-325 5-31 (34)
229 2akf_A Coronin-1A; coiled coil 67.1 13 0.00046 24.1 5.0 27 285-311 3-29 (32)
230 2zxx_A Geminin; coiled-coil, c 66.8 34 0.0012 26.8 8.4 42 284-329 37-78 (79)
231 3qne_A Seryl-tRNA synthetase, 66.7 30 0.001 35.2 10.3 19 286-304 45-63 (485)
232 4b4t_M 26S protease regulatory 66.6 5.6 0.00019 39.8 4.9 46 285-330 29-74 (434)
233 1fxk_C Protein (prefoldin); ar 66.6 24 0.00083 28.8 8.1 31 284-314 98-128 (133)
234 1ses_A Seryl-tRNA synthetase; 66.4 42 0.0014 33.2 11.1 37 305-343 67-103 (421)
235 3mud_A DNA repair protein XRCC 66.1 20 0.00068 32.0 7.8 33 286-318 133-165 (175)
236 1deq_A Fibrinogen (alpha chain 65.8 14 0.00048 36.7 7.4 45 281-325 113-157 (390)
237 3okq_A BUD site selection prot 65.8 56 0.0019 28.2 10.3 59 268-326 8-78 (141)
238 2b9c_A Striated-muscle alpha t 65.6 65 0.0022 27.6 11.5 70 260-329 37-121 (147)
239 3q0x_A Centriole protein; cent 64.9 14 0.00047 34.2 6.8 44 281-324 178-221 (228)
240 2ke4_A CDC42-interacting prote 64.7 33 0.0011 27.7 8.2 30 300-329 60-89 (98)
241 1lq7_A Alpha3W; three helix bu 64.6 16 0.00056 27.0 5.8 15 313-327 52-66 (67)
242 2wuj_A Septum site-determining 64.6 6.5 0.00022 28.6 3.7 26 304-329 29-54 (57)
243 1j1d_B Troponin T, TNT; THIN f 64.5 42 0.0015 27.5 9.0 39 291-329 45-83 (106)
244 2ocy_A RAB guanine nucleotide 64.3 46 0.0016 29.1 9.6 10 277-286 82-91 (154)
245 2b5u_A Colicin E3; high resolu 64.3 61 0.0021 33.4 11.8 25 270-294 317-341 (551)
246 2wq1_A General control protein 63.6 15 0.00051 24.4 4.8 27 299-325 4-30 (33)
247 2xu6_A MDV1 coiled coil; prote 63.3 19 0.00064 27.9 6.1 50 280-329 20-69 (72)
248 3q0x_A Centriole protein; cent 63.1 18 0.00062 33.4 7.2 40 285-324 175-214 (228)
249 1uo4_A General control protein 62.6 12 0.00042 25.0 4.3 26 300-325 6-31 (34)
250 3sja_C Golgi to ER traffic pro 62.6 32 0.0011 26.1 7.2 23 305-327 35-57 (65)
251 2dq0_A Seryl-tRNA synthetase; 61.5 17 0.00057 36.5 7.2 61 281-343 45-108 (455)
252 3m0d_C TNF receptor-associated 61.3 47 0.0016 24.5 8.7 48 281-328 6-53 (65)
253 1l8d_A DNA double-strand break 61.2 28 0.00097 27.5 7.3 32 295-326 71-102 (112)
254 2bni_A General control protein 61.2 12 0.00041 25.0 4.1 27 299-325 5-31 (34)
255 3ghg_C Fibrinogen gamma chain; 60.9 7.3 0.00025 39.0 4.5 58 270-327 80-137 (411)
256 3he4_A Synzip6; heterodimeric 60.7 10 0.00036 27.1 4.0 36 282-317 18-53 (56)
257 3e98_A GAF domain of unknown f 60.0 17 0.00058 33.6 6.6 27 284-310 82-111 (252)
258 1joc_A EEA1, early endosomal a 60.0 31 0.001 28.6 7.5 34 282-315 19-52 (125)
259 3tnu_B Keratin, type II cytosk 60.0 42 0.0014 27.7 8.4 11 256-266 35-45 (129)
260 1uii_A Geminin; human, DNA rep 59.9 30 0.001 27.4 6.9 29 281-309 46-74 (83)
261 2dq3_A Seryl-tRNA synthetase; 59.6 8 0.00027 38.3 4.5 29 300-328 73-101 (425)
262 1dkg_A Nucleotide exchange fac 59.4 18 0.00062 32.4 6.4 7 280-286 66-72 (197)
263 3ra3_B P2F; coiled coil domain 59.3 10 0.00035 23.8 3.3 13 312-324 10-22 (28)
264 2j5u_A MREC protein; bacterial 59.3 4 0.00014 37.8 2.2 23 290-312 21-43 (255)
265 2q6q_A Spindle POLE BODY compo 58.9 59 0.002 25.0 8.3 40 290-329 19-58 (74)
266 2yko_A LINE-1 ORF1P; RNA-bindi 58.7 14 0.00048 34.4 5.6 41 283-323 8-48 (233)
267 2i1j_A Moesin; FERM, coiled-co 58.7 7.6 0.00026 40.1 4.3 43 282-324 336-378 (575)
268 2hy6_A General control protein 58.6 22 0.00076 23.7 5.0 27 299-325 5-31 (34)
269 2b5u_A Colicin E3; high resolu 58.6 40 0.0014 34.7 9.3 28 283-310 316-343 (551)
270 2no2_A HIP-I, huntingtin-inter 58.4 74 0.0025 25.9 11.8 37 293-329 59-95 (107)
271 3mtu_A Tropomyosin alpha-1 cha 58.4 18 0.0006 27.8 5.3 46 282-327 17-62 (75)
272 1x4t_A Hypothetical protein LO 58.1 30 0.001 27.9 6.7 53 282-335 33-85 (92)
273 3tnu_A Keratin, type I cytoske 57.9 73 0.0025 26.3 9.6 8 259-266 40-47 (131)
274 1fxk_A Prefoldin; archaeal pro 57.9 25 0.00086 27.4 6.4 35 293-327 70-104 (107)
275 2zvf_A Alanyl-tRNA synthetase; 57.6 12 0.00042 31.6 4.8 31 284-314 28-58 (171)
276 2z5i_A TM, general control pro 57.6 19 0.00064 25.9 5.0 28 284-311 8-35 (52)
277 2q6q_A Spindle POLE BODY compo 57.2 55 0.0019 25.1 7.7 45 285-329 7-51 (74)
278 4dk0_A Putative MACA; alpha-ha 56.9 57 0.0019 30.3 9.7 25 303-327 123-147 (369)
279 2odv_A Plectin 1, HD1; plakin 56.5 95 0.0033 28.3 10.9 40 256-295 99-138 (235)
280 1fmh_A General control protein 56.4 13 0.00045 24.1 3.5 23 306-328 5-27 (33)
281 2oto_A M protein; helical coil 56.1 49 0.0017 28.1 8.4 24 284-307 60-83 (155)
282 2no2_A HIP-I, huntingtin-inter 55.9 81 0.0028 25.6 12.2 61 269-330 43-103 (107)
283 1deq_A Fibrinogen (alpha chain 55.1 25 0.00085 35.0 7.0 32 298-329 116-154 (390)
284 2zvf_A Alanyl-tRNA synthetase; 55.0 9.1 0.00031 32.5 3.5 30 299-328 29-58 (171)
285 3k29_A Putative uncharacterize 55.0 1.1E+02 0.0039 27.0 12.4 14 261-274 34-47 (169)
286 2l5g_B Putative uncharacterize 55.0 25 0.00085 24.5 5.0 31 285-315 6-36 (42)
287 2l5g_B Putative uncharacterize 54.8 27 0.00092 24.4 5.2 31 299-329 6-36 (42)
288 2zqm_A Prefoldin beta subunit 54.7 76 0.0026 24.9 12.6 33 297-329 72-104 (117)
289 2oa5_A Hypothetical protein BQ 54.6 6.8 0.00023 32.6 2.5 24 304-327 10-33 (110)
290 2r2v_A GCN4 leucine zipper; co 54.6 27 0.00093 23.3 4.9 28 299-326 5-32 (34)
291 3a7o_A Autophagy protein 16; c 54.6 35 0.0012 26.4 6.3 44 279-322 30-73 (75)
292 1m1j_B Fibrinogen beta chain; 53.5 1.4E+02 0.0047 30.3 12.4 15 258-272 104-118 (464)
293 1m1j_C Fibrinogen gamma chain; 53.5 33 0.0011 34.2 7.7 49 282-330 85-133 (409)
294 3q4f_C DNA repair protein XRCC 53.2 24 0.00083 31.7 6.0 21 289-309 162-182 (186)
295 3vmx_A Voltage-gated hydrogen 53.0 60 0.002 23.2 7.2 29 281-309 11-39 (48)
296 1fxk_C Protein (prefoldin); ar 52.8 44 0.0015 27.2 7.3 40 284-323 91-130 (133)
297 2w6b_A RHO guanine nucleotide 52.7 63 0.0021 23.8 7.1 31 285-315 14-44 (56)
298 3k66_A Beta-amyloid-like prote 52.5 81 0.0028 29.4 9.6 56 280-335 37-97 (239)
299 1gk6_A Vimentin; intermediate 51.9 65 0.0022 23.3 8.1 47 280-326 6-52 (59)
300 3ljm_A Coil Ser L9C; de novo d 51.6 21 0.00073 22.8 3.9 12 314-325 13-24 (31)
301 2er8_A Regulatory protein Leu3 51.4 8 0.00027 28.2 2.3 22 280-301 48-69 (72)
302 1ik9_A DNA repair protein XRCC 51.3 55 0.0019 29.7 8.3 26 287-312 138-163 (213)
303 2efr_A General control protein 51.1 1.2E+02 0.0042 26.3 12.4 34 287-320 97-130 (155)
304 1ytz_T Troponin T; muscle, THI 50.8 1E+02 0.0035 25.2 11.4 38 291-328 45-82 (107)
305 3qwe_A GMIP, GEM-interacting p 50.7 1.7E+02 0.0057 27.7 12.0 69 269-338 132-219 (279)
306 2lw1_A ABC transporter ATP-bin 50.5 46 0.0016 25.8 6.7 48 281-328 29-82 (89)
307 2ve7_A Kinetochore protein HEC 50.5 29 0.001 33.0 6.6 34 280-313 184-217 (315)
308 3ni0_A Bone marrow stromal ant 50.4 1E+02 0.0034 25.1 8.9 24 308-331 66-89 (99)
309 1hlo_A Protein (transcription 50.3 13 0.00046 28.3 3.4 18 304-321 59-76 (80)
310 2aze_A Transcription factor DP 50.3 40 0.0014 29.5 6.9 13 277-289 22-34 (155)
311 1m1j_A Fibrinogen alpha subuni 50.0 1E+02 0.0035 31.4 10.6 45 281-325 111-155 (491)
312 3vp9_A General transcriptional 49.5 71 0.0024 25.6 7.7 46 284-329 39-88 (92)
313 3iox_A AGI/II, PA; alpha helix 49.3 48 0.0017 33.9 8.2 30 283-312 36-65 (497)
314 2zdi_C Prefoldin subunit alpha 49.2 35 0.0012 28.7 6.3 37 286-322 103-139 (151)
315 3lss_A Seryl-tRNA synthetase; 49.1 45 0.0015 33.9 8.0 31 311-343 113-143 (484)
316 4ani_A Protein GRPE; chaperone 49.0 36 0.0012 31.1 6.7 27 281-307 73-99 (213)
317 3tq2_A KE1; parallel three hel 48.8 50 0.0017 21.8 5.4 31 298-328 4-34 (36)
318 3plt_A Sphingolipid long chain 48.7 74 0.0025 29.6 8.8 18 264-281 97-115 (234)
319 2z5i_A TM, general control pro 48.4 64 0.0022 23.0 6.6 37 289-325 6-42 (52)
320 4ath_A MITF, microphthalmia-as 48.4 39 0.0013 26.7 5.9 33 293-329 44-76 (83)
321 1d7m_A Cortexillin I; coiled-c 48.2 72 0.0025 25.8 7.4 31 283-313 27-57 (101)
322 1t3j_A Mitofusin 1; coiled coi 48.1 60 0.002 26.3 7.1 41 284-328 50-90 (96)
323 1lwu_B Fibrinogen beta chain; 48.0 21 0.00071 34.5 5.2 26 300-325 33-58 (323)
324 2wg5_A General control protein 47.8 16 0.00054 29.7 3.7 39 305-343 10-49 (109)
325 3rrk_A V-type ATPase 116 kDa s 47.7 38 0.0013 31.9 6.9 34 284-317 95-128 (357)
326 1ykh_B RNA polymerase II holoe 47.6 34 0.0011 28.8 5.8 27 288-314 92-118 (132)
327 4gkw_A Spindle assembly abnorm 47.5 1.4E+02 0.0047 25.8 12.1 22 310-331 141-162 (167)
328 3viq_B Mating-type switching p 47.4 69 0.0023 25.4 7.2 26 284-309 4-29 (85)
329 1t6f_A Geminin; coiled-coil, c 47.4 33 0.0011 23.2 4.5 24 284-307 10-33 (37)
330 1ytz_T Troponin T; muscle, THI 47.2 52 0.0018 27.0 6.7 44 285-328 46-89 (107)
331 1yke_B RNA polymerase II holoe 47.2 38 0.0013 29.3 6.2 30 288-317 92-121 (151)
332 2yko_A LINE-1 ORF1P; RNA-bindi 47.1 39 0.0013 31.4 6.7 48 283-330 1-48 (233)
333 2ke4_A CDC42-interacting prote 47.0 88 0.003 25.1 8.0 19 311-329 64-82 (98)
334 2e7s_A RAB guanine nucleotide 47.0 42 0.0014 28.8 6.3 21 309-329 96-116 (135)
335 2xus_A Breast cancer metastasi 47.0 46 0.0016 23.9 5.5 24 277-304 6-29 (49)
336 3gp4_A Transcriptional regulat 46.9 72 0.0025 26.6 7.8 29 286-314 86-114 (142)
337 3fpp_A Macrolide-specific effl 46.9 1.2E+02 0.0041 27.7 10.1 26 303-328 122-147 (341)
338 1lrz_A FEMA, factor essential 46.5 59 0.002 31.5 8.2 21 281-301 247-267 (426)
339 3onj_A T-snare VTI1; helix, HA 46.4 93 0.0032 24.5 8.0 24 306-329 69-93 (97)
340 1l8d_A DNA double-strand break 46.3 1.1E+02 0.0036 24.1 11.3 51 279-329 29-98 (112)
341 4b4t_J 26S protease regulatory 46.3 22 0.00074 35.3 5.1 55 281-342 25-80 (405)
342 2w6a_A ARF GTPase-activating p 45.9 92 0.0031 23.3 8.4 22 293-314 39-60 (63)
343 3ljm_A Coil Ser L9C; de novo d 45.5 37 0.0013 21.7 4.3 25 283-307 3-27 (31)
344 4b4t_L 26S protease subunit RP 45.4 21 0.00072 35.6 4.9 27 303-329 73-99 (437)
345 2yo3_A General control protein 45.3 58 0.002 30.8 7.6 53 274-326 209-261 (268)
346 1hs7_A Syntaxin VAM3; UP-and-D 45.0 32 0.0011 27.7 5.1 45 284-328 36-83 (97)
347 3n7n_E Monopolin complex subun 44.8 4.6 0.00016 32.8 0.0 34 291-324 39-72 (95)
348 3rrk_A V-type ATPase 116 kDa s 44.5 72 0.0024 29.9 8.3 28 283-310 228-255 (357)
349 3sjb_C Golgi to ER traffic pro 44.4 68 0.0023 25.8 6.8 21 306-326 53-73 (93)
350 3ol1_A Vimentin; structural ge 44.3 1.3E+02 0.0044 24.6 11.6 40 297-338 64-103 (119)
351 2gkw_A TNF receptor-associated 43.3 37 0.0013 29.4 5.7 34 283-316 2-35 (192)
352 2wg5_A General control protein 43.2 21 0.0007 29.0 3.7 17 291-307 10-26 (109)
353 2aze_B Transcription factor E2 43.2 40 0.0014 27.4 5.4 29 287-315 12-40 (106)
354 1vcs_A Vesicle transport throu 43.1 1.1E+02 0.0037 24.4 7.9 50 280-329 37-94 (102)
355 3l4q_C Phosphatidylinositol 3- 43.0 81 0.0028 27.9 7.8 44 284-327 113-156 (170)
356 4b4t_J 26S protease regulatory 42.9 39 0.0013 33.5 6.3 25 287-311 38-62 (405)
357 1tu3_F RAB GTPase binding effe 42.8 41 0.0014 26.3 5.1 22 320-341 44-65 (79)
358 1f5n_A Interferon-induced guan 42.7 1.8E+02 0.0063 30.0 11.6 10 319-328 570-579 (592)
359 3he4_A Synzip6; heterodimeric 42.4 9.5 0.00032 27.4 1.3 31 295-325 17-47 (56)
360 3gp4_A Transcriptional regulat 42.3 1.5E+02 0.005 24.6 9.4 27 290-316 83-109 (142)
361 2xnx_M M protein, M1-BC1; cell 42.0 1.7E+02 0.0058 25.3 10.4 33 302-334 80-112 (146)
362 3vem_A Helicase protein MOM1; 41.9 1.5E+02 0.0052 24.7 11.3 31 275-305 55-85 (115)
363 2aze_A Transcription factor DP 41.6 67 0.0023 28.1 6.9 29 293-321 10-38 (155)
364 4fla_A Regulation of nuclear P 41.4 92 0.0032 26.8 7.8 12 281-292 86-97 (152)
365 3lay_A Zinc resistance-associa 41.2 1E+02 0.0034 27.2 8.1 17 296-312 114-130 (175)
366 1j1d_C Troponin I, TNI; THIN f 40.9 67 0.0023 27.4 6.6 40 291-330 61-107 (133)
367 2c9l_Y EB1, zebra, BZLF1 trans 40.8 1.1E+02 0.0036 22.6 8.7 43 258-304 3-45 (63)
368 2p22_A Suppressor protein STP2 40.5 49 0.0017 29.3 6.0 30 287-316 55-84 (174)
369 3m0a_A TNF receptor-associated 40.4 1E+02 0.0035 22.3 8.1 34 284-317 8-41 (66)
370 4b4t_L 26S protease subunit RP 40.1 29 0.00098 34.6 4.9 28 295-322 72-99 (437)
371 2lf0_A Uncharacterized protein 40.0 44 0.0015 28.1 5.3 12 261-272 10-21 (123)
372 1a93_A Coiled coil, LZ, MYC pr 39.8 53 0.0018 21.9 4.6 26 303-328 8-33 (34)
373 4dk0_A Putative MACA; alpha-ha 39.7 67 0.0023 29.8 7.2 37 291-327 118-154 (369)
374 1tu3_F RAB GTPase binding effe 39.0 76 0.0026 24.8 6.0 59 282-340 13-76 (79)
375 2j69_A Bacterial dynamin-like 39.0 89 0.003 32.6 8.6 41 287-327 351-391 (695)
376 2xnx_M M protein, M1-BC1; cell 38.5 2E+02 0.0067 25.0 9.4 32 298-329 69-100 (146)
377 3iyn_Q Protein IX, PIX, hexon- 38.4 20 0.00068 30.6 2.9 8 198-205 33-40 (140)
378 2l5g_A GPS2 protein, G protein 38.2 51 0.0017 22.5 4.3 20 295-314 15-34 (38)
379 2p22_A Suppressor protein STP2 38.1 83 0.0028 27.9 7.1 39 285-323 46-84 (174)
380 3vlc_E Golgi to ER traffic pro 38.1 35 0.0012 27.6 4.2 18 307-324 61-78 (94)
381 3zwh_Q Myosin-9; Ca-binding pr 37.8 13 0.00043 26.3 1.4 24 303-326 7-30 (45)
382 3q4f_C DNA repair protein XRCC 37.2 54 0.0018 29.5 5.7 25 280-304 160-184 (186)
383 1cii_A Colicin IA; bacteriocin 37.1 2.4E+02 0.0082 29.0 10.9 44 265-310 342-385 (602)
384 3fx0_A NF-kappa-B essential mo 37.0 22 0.00074 28.9 2.8 47 277-323 34-83 (96)
385 3tq7_B Microtubule-associated 36.7 64 0.0022 25.3 5.4 47 281-327 8-54 (82)
386 2zdi_C Prefoldin subunit alpha 36.6 87 0.003 26.2 6.8 33 284-316 108-140 (151)
387 3mud_A DNA repair protein XRCC 36.1 1.2E+02 0.0042 26.9 7.8 29 277-305 138-166 (175)
388 3azd_A Short alpha-tropomyosin 35.8 10 0.00035 25.5 0.6 21 285-305 8-28 (37)
389 4dzo_A Mitotic spindle assembl 35.7 69 0.0024 26.7 5.9 25 281-305 4-28 (123)
390 2dq3_A Seryl-tRNA synthetase; 35.1 18 0.00061 35.8 2.5 34 308-343 74-107 (425)
391 4fm3_A Uncharacterized hypothe 35.0 1.3E+02 0.0043 24.4 7.1 39 279-317 55-93 (98)
392 2djv_A Methionyl-tRNA syntheta 34.8 89 0.003 24.1 6.0 20 313-332 44-63 (79)
393 4h10_A ARYL hydrocarbon recept 34.5 86 0.0029 23.8 5.7 33 260-292 5-37 (73)
394 1j1d_C Troponin I, TNI; THIN f 34.4 1.5E+02 0.0052 25.1 7.9 46 280-325 64-109 (133)
395 2k48_A Nucleoprotein; viral pr 34.4 1.9E+02 0.0066 23.7 8.4 17 297-313 84-100 (107)
396 4b4t_M 26S protease regulatory 34.4 24 0.00082 35.2 3.3 37 286-322 37-73 (434)
397 3p7i_A PHND, subunit of alkylp 34.2 40 0.0014 31.3 4.7 49 253-301 263-311 (321)
398 1zxa_A CGMP-dependent protein 33.9 76 0.0026 24.1 5.3 13 316-328 39-51 (67)
399 1zhc_A Hypothetical protein HP 33.9 44 0.0015 25.5 4.0 43 284-327 27-69 (76)
400 3he4_B Synzip5; heterodimeric 33.7 1.2E+02 0.004 20.9 6.6 14 288-301 10-23 (46)
401 3pik_A Cation efflux system pr 33.7 2.9E+02 0.01 25.6 11.8 31 276-306 346-376 (446)
402 3swy_A Cyclic nucleotide-gated 33.6 1.2E+02 0.0043 21.3 6.2 22 283-304 7-28 (46)
403 1rtm_1 Mannose-binding protein 33.4 47 0.0016 26.8 4.5 16 284-299 7-22 (149)
404 3swk_A Vimentin; cytoskeleton, 33.1 1.7E+02 0.0058 22.7 10.0 39 290-328 44-82 (86)
405 1qvr_A CLPB protein; coiled co 33.1 1.6E+02 0.0056 31.1 9.6 18 280-297 400-417 (854)
406 2lq4_p Lysophosphatidic acid r 33.0 8.1 0.00028 29.4 -0.3 28 299-326 52-79 (80)
407 3l4f_A RHO guanine nucleotide 32.5 1.6E+02 0.0053 22.0 7.5 41 288-328 7-47 (61)
408 3aon_A V-type sodium ATPase su 32.3 2.1E+02 0.0073 25.5 9.0 54 283-336 33-86 (217)
409 3u0c_A Invasin IPAB, 62 kDa an 32.0 2.8E+02 0.0095 24.8 10.2 73 259-331 70-146 (201)
410 3jsv_C NF-kappa-B essential mo 32.0 2E+02 0.0068 23.2 8.7 48 281-328 40-87 (94)
411 3ljc_A ATP-dependent protease 31.9 1.9E+02 0.0065 25.8 8.7 26 300-326 224-249 (252)
412 1hwt_C Protein (heme activator 31.8 25 0.00086 25.9 2.3 23 279-301 56-78 (81)
413 2js5_A Uncharacterized protein 31.7 1.7E+02 0.0059 22.4 7.8 27 303-329 39-65 (71)
414 1j1e_C Troponin I, TNI; THIN f 31.5 1.1E+02 0.0036 27.4 6.6 40 291-330 61-107 (180)
415 1gax_A Valrs, valyl-tRNA synth 31.1 78 0.0027 34.2 6.8 30 29-64 398-427 (862)
416 3hhm_B NISH2 P85alpha; PI3KCA, 30.6 1.4E+02 0.0048 29.1 8.0 23 306-328 223-245 (373)
417 3l4f_A RHO guanine nucleotide 30.5 1.7E+02 0.0058 21.9 7.0 41 285-325 11-51 (61)
418 3gwk_C SAG1039, putative uncha 30.5 1.1E+02 0.0037 23.0 5.9 25 303-327 56-80 (98)
419 4a3a_A Amphiphysin; structural 30.5 1.4E+02 0.0047 27.1 7.5 19 276-294 139-157 (243)
420 1j1d_B Troponin T, TNT; THIN f 30.4 2.2E+02 0.0075 23.2 9.4 41 281-328 49-89 (106)
421 1zhc_A Hypothetical protein HP 30.4 73 0.0025 24.2 4.8 48 281-329 17-64 (76)
422 3nr7_A DNA-binding protein H-N 30.1 2E+02 0.0068 22.5 7.7 46 282-327 25-70 (86)
423 2aze_B Transcription factor E2 30.1 1.2E+02 0.0041 24.5 6.3 35 288-322 6-40 (106)
424 4dci_A Uncharacterized protein 30.1 2.3E+02 0.0078 24.5 8.4 18 281-298 43-60 (150)
425 1yzm_A FYVE-finger-containing 30.1 31 0.0011 24.9 2.4 25 277-301 24-48 (51)
426 2xzr_A Immunoglobulin-binding 29.9 2.3E+02 0.0078 23.2 10.9 47 280-326 61-107 (114)
427 3vlc_E Golgi to ER traffic pro 29.8 31 0.0011 27.9 2.7 21 300-320 61-81 (94)
428 1m1j_A Fibrinogen alpha subuni 29.7 3E+02 0.01 28.1 10.2 18 254-271 58-75 (491)
429 1fxk_A Prefoldin; archaeal pro 29.5 1.9E+02 0.0065 22.2 12.0 33 297-329 67-99 (107)
430 4ati_A MITF, microphthalmia-as 29.2 32 0.0011 28.3 2.8 15 281-295 74-88 (118)
431 3swf_A CGMP-gated cation chann 28.7 1.1E+02 0.0037 23.7 5.4 28 281-308 7-34 (74)
432 2fic_A Bridging integrator 1; 28.6 2.2E+02 0.0075 25.1 8.5 18 290-307 192-209 (251)
433 3thf_A Protein shroom; coiled- 28.4 2E+02 0.0069 25.9 7.9 30 276-305 14-43 (190)
434 3csx_A Putative uncharacterize 28.3 1.5E+02 0.005 23.3 6.2 62 255-329 16-77 (81)
435 3aon_A V-type sodium ATPase su 28.2 2.2E+02 0.0075 25.5 8.4 33 284-316 41-73 (217)
436 3ibp_A Chromosome partition pr 28.1 2.5E+02 0.0086 27.0 9.0 9 285-293 228-236 (302)
437 4a3a_A Amphiphysin; structural 28.1 2.5E+02 0.0085 25.4 8.8 56 277-332 34-89 (243)
438 3umh_A Amyloid beta A4 protein 28.0 96 0.0033 28.4 5.9 47 281-329 43-89 (211)
439 4avm_A Bridging integrator 2; 27.9 2.3E+02 0.0078 25.4 8.5 52 280-331 32-83 (237)
440 1dkg_A Nucleotide exchange fac 27.8 1.4E+02 0.0047 26.6 6.9 37 303-339 61-97 (197)
441 1a93_A Coiled coil, LZ, MYC pr 27.8 86 0.0029 20.9 4.1 12 293-304 19-30 (34)
442 1rtm_1 Mannose-binding protein 27.4 69 0.0024 25.8 4.5 24 286-309 2-25 (149)
443 2qyw_A Vesicle transport throu 27.3 2.3E+02 0.0079 22.4 10.3 31 277-307 45-75 (102)
444 1lwu_B Fibrinogen beta chain; 27.1 93 0.0032 29.9 6.0 12 297-308 37-48 (323)
445 3n5l_A Binding protein compone 27.1 72 0.0025 29.2 5.1 46 256-301 257-302 (310)
446 3pjs_K KCSA, voltage-gated pot 26.9 92 0.0031 26.3 5.3 17 284-300 141-157 (166)
447 1lwu_A Fibrinogen alpha-1 chai 26.6 1.3E+02 0.0044 25.3 5.9 38 284-321 25-62 (119)
448 1j1e_C Troponin I, TNI; THIN f 26.6 1.9E+02 0.0066 25.7 7.5 44 280-323 64-107 (180)
449 3ghg_B Fibrinogen beta chain; 26.5 1.1E+02 0.0039 30.9 6.7 36 293-328 161-196 (461)
450 2lf0_A Uncharacterized protein 26.5 63 0.0022 27.2 4.0 46 280-325 9-59 (123)
451 1flk_A TNF receptor associated 26.4 73 0.0025 28.4 4.8 29 286-314 41-69 (228)
452 1lq7_A Alpha3W; three helix bu 26.4 54 0.0019 24.2 3.2 10 286-295 7-16 (67)
453 3zbh_A ESXA; unknown function, 26.3 1.4E+02 0.0049 22.0 5.9 25 303-327 57-81 (99)
454 3etw_A Adhesin A; antiparallel 26.2 2.8E+02 0.0097 23.0 8.5 71 256-327 19-89 (119)
455 2akf_A Coronin-1A; coiled coil 25.9 93 0.0032 20.2 3.8 22 293-314 4-25 (32)
456 4ad8_A DNA repair protein RECN 25.8 2.1E+02 0.007 28.3 8.4 29 280-308 206-240 (517)
457 1fmh_B General control protein 25.5 83 0.0029 20.3 3.5 22 307-328 6-27 (33)
458 3ghg_C Fibrinogen gamma chain; 25.3 2.1E+02 0.0071 28.5 8.2 42 289-330 92-133 (411)
459 2efl_A Formin-binding protein 25.2 3.6E+02 0.012 23.9 9.6 15 303-317 138-152 (305)
460 4gif_A Polycystic kidney disea 25.1 1.8E+02 0.0062 20.4 5.7 31 282-312 8-38 (45)
461 1a92_A Delta antigen; leucine 25.0 1.7E+02 0.0058 21.0 5.4 16 304-319 23-38 (50)
462 3l4q_C Phosphatidylinositol 3- 25.0 2.4E+02 0.0083 24.8 7.8 45 284-328 99-143 (170)
463 4i0x_B ESAT-6-like protein MAB 25.0 1.6E+02 0.0054 22.6 6.0 15 282-296 33-47 (103)
464 2f1m_A Acriflavine resistance 24.9 1.5E+02 0.0051 26.3 6.6 26 301-326 104-129 (277)
465 1r8i_A TRAC; VIRB5, helical bu 24.8 88 0.003 27.8 5.0 37 302-338 15-51 (213)
466 3gpv_A Transcriptional regulat 24.8 2E+02 0.007 23.8 7.1 47 283-329 76-129 (148)
467 3ilw_A DNA gyrase subunit A; D 24.7 1.5E+02 0.0052 30.1 7.2 46 280-325 415-460 (470)
468 3brv_B NF-kappa-B essential mo 24.6 2.4E+02 0.0081 21.6 7.5 49 269-317 21-69 (70)
469 3gpv_A Transcriptional regulat 24.5 1.2E+02 0.0039 25.4 5.4 42 286-327 93-134 (148)
470 4avm_A Bridging integrator 2; 24.4 2.2E+02 0.0077 25.4 7.8 53 276-328 134-190 (237)
471 4ioe_A Secreted protein ESXB; 24.4 1.1E+02 0.0038 22.5 4.8 31 284-314 12-42 (93)
472 1ykh_B RNA polymerase II holoe 24.3 1.9E+02 0.0064 24.1 6.7 45 249-293 81-125 (132)
473 3tul_A Cell invasion protein S 24.2 1E+02 0.0034 27.0 5.0 48 280-327 75-125 (158)
474 2p4v_A Transcription elongatio 24.2 2.8E+02 0.0096 23.5 7.9 62 280-343 8-78 (158)
475 2inr_A DNA topoisomerase 4 sub 24.1 1.4E+02 0.0047 30.7 6.8 44 282-325 455-498 (514)
476 1bb1_B Designed, thermostable 23.6 1.4E+02 0.0047 19.6 4.4 26 303-328 3-28 (36)
477 1urq_A M-tomosyn isoform; tran 23.6 1.5E+02 0.0051 21.8 5.3 36 277-312 28-63 (63)
478 3mtu_A Tropomyosin alpha-1 cha 23.6 2.4E+02 0.0082 21.3 8.0 50 281-330 2-51 (75)
479 2pms_C Pneumococcal surface pr 23.6 1.1E+02 0.0038 25.8 5.0 51 279-329 59-116 (125)
480 4aj5_K Spindle and kinetochore 23.5 3.3E+02 0.011 22.9 8.3 50 281-330 50-99 (123)
481 3rvy_A ION transport protein; 23.5 17 0.00058 33.0 0.0 42 272-313 240-281 (285)
482 1s1c_X RHO-associated, coiled- 23.5 83 0.0028 24.1 3.9 32 297-328 1-32 (71)
483 4f3l_B BMAL1B; BHLH, PAS, circ 23.5 48 0.0016 31.7 3.2 62 254-316 3-64 (387)
484 1z0k_B FYVE-finger-containing 23.5 55 0.0019 25.0 2.9 27 272-300 39-65 (69)
485 4efa_E V-type proton ATPase su 23.3 3.9E+02 0.013 23.6 11.1 75 254-328 40-124 (233)
486 3a6m_A Protein GRPE, HSP-70 co 23.1 1.5 5.1E-05 39.0 -7.0 63 280-342 18-80 (177)
487 3a5c_G V-type ATP synthase sub 23.0 2.6E+02 0.0088 25.2 7.8 49 280-328 8-56 (223)
488 2vs0_A Virulence factor ESXA; 23.0 1.8E+02 0.0063 21.3 5.9 34 284-317 9-42 (97)
489 1r8e_A Multidrug-efflux transp 23.0 1.9E+02 0.0066 25.5 7.0 51 259-311 66-116 (278)
490 2l5g_A GPS2 protein, G protein 22.9 1.2E+02 0.0041 20.6 4.1 28 298-325 11-38 (38)
491 3frt_A Charged multivesicular 22.7 1.7E+02 0.0057 26.6 6.5 38 291-328 10-47 (218)
492 1zvu_A Topoisomerase IV subuni 22.5 1.6E+02 0.0055 31.5 7.2 46 280-325 401-446 (716)
493 1gk7_A Vimentin; intermediate 22.5 1.3E+02 0.0043 20.3 4.2 35 287-321 5-39 (39)
494 3r4h_A Coiled coil helix CC-TE 22.4 1.6E+02 0.0053 19.2 4.4 26 303-328 3-28 (34)
495 1yc9_A VCEC, multidrug resista 22.4 4.6E+02 0.016 24.2 11.1 67 260-326 326-392 (442)
496 3eff_K Voltage-gated potassium 22.3 1.7E+02 0.0057 23.7 5.9 41 265-305 95-135 (139)
497 1yke_B RNA polymerase II holoe 22.3 2E+02 0.007 24.6 6.6 45 249-293 81-125 (151)
498 3zs9_C Golgi to ER traffic pro 22.3 67 0.0023 21.9 2.8 32 248-279 1-32 (38)
499 1wrd_A TOM1, target of MYB pro 22.2 2.1E+02 0.0071 22.8 6.3 65 278-342 10-80 (103)
500 1ez3_A Syntaxin-1A; three heli 22.2 2.9E+02 0.0099 21.7 8.1 47 281-327 12-68 (127)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.48 E-value=4.7e-14 Score=104.80 Aligned_cols=53 Identities=40% Similarity=0.553 Sum_probs=49.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
||++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|++++.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999999999999999877653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.40 E-value=1.6e-12 Score=98.64 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=52.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|..-
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999997777776666543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.38 E-value=1.9e-12 Score=97.43 Aligned_cols=57 Identities=33% Similarity=0.457 Sum_probs=51.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
||++|+++||+||++||.||++++++|+.+++.|+.+|..|+.+|..|+.++..|+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999776666665554
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.34 E-value=1.6e-12 Score=98.27 Aligned_cols=57 Identities=30% Similarity=0.444 Sum_probs=50.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
|++||+++||+||++||.||++++++|+.+|+.|+.+|..|..++..|+.++..|+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999777666665543
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.27 E-value=6.3e-12 Score=95.72 Aligned_cols=52 Identities=35% Similarity=0.493 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
.++++.+||+|||+||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455999999999999999999999999999999999999988876653
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.20 E-value=3.3e-11 Score=91.57 Aligned_cols=57 Identities=30% Similarity=0.478 Sum_probs=44.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+|+++++++||.||+|||.||++++++|+.+++.|+.+|..|+.+|..|+.|+..|+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999977666555554
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.16 E-value=9.8e-11 Score=91.00 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=55.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 262 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 262 ~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.||+.+||.|+|.+|.||++||.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999999999999888888888888887764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.94 E-value=2.4e-09 Score=86.36 Aligned_cols=61 Identities=26% Similarity=0.345 Sum_probs=50.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
...|+.+|.+||++||.++++...+++.++..|+.||..|+.+|..|+.++..|+.-..+|
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5666888999999999999999999999999999999999999976655555554444333
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.86 E-value=6.9e-09 Score=82.13 Aligned_cols=55 Identities=29% Similarity=0.389 Sum_probs=47.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
...|+.+|.+||++||.++++...+++.++..|+.||..|+.+|..|+.++..|+
T Consensus 16 Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556788999999999999999999999999999999999999976655555544
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.82 E-value=1.1e-10 Score=97.48 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
..+..++|.+||+++||.+|+.||.||.+++++||.++..|+.+.+.|..++..|+.+++.|+
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999987666666555555555544444433333
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.56 E-value=3.7e-07 Score=74.03 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+-.++|..||..+||.+|+-||.||.+.+++||.++..|..+...|+.++ ..+..|...++.++.+|.
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~-------~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEV-------SRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 345678889999999999999999999999888876666655555555544 556666666677766664
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.04 E-value=0.0012 Score=46.25 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|+|+.+||.++..|+..|.+|..++..|+.|+..|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999999999999999877666555554
No 13
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.89 E-value=0.0036 Score=45.64 Aligned_cols=48 Identities=42% Similarity=0.551 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.++|-++|+.|+.||..||+||+.=..++.+|+.|-.-+|+-|+.|.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 578999999999999999999999999999999999999999988863
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.84 E-value=0.00045 Score=55.85 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018676 257 RELKRQKRKQSNRESARRSRLRKQAECEELQA 288 (352)
Q Consensus 257 rE~KR~RRk~~NRESARrSR~RKq~~~eeLe~ 288 (352)
..+|..||+.+||.+|++||+||.+.+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34678899999999999999999999888753
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.59 E-value=0.0071 Score=48.10 Aligned_cols=55 Identities=31% Similarity=0.382 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
.+.-|+.+++.|+.+|..|..++..++...+.|..||.+|+++..... +.|+.|.
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~LL 75 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344555666666666666666666666655666666666666665554 5555444
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=96.19 E-value=0.016 Score=47.67 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 281 AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++-+|+.+++.|+.||..|+. +|..|..+++.|+.||..|+.+-+.-.
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788999999888888887 788888888888888888887765543
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.01 E-value=0.024 Score=45.03 Aligned_cols=53 Identities=32% Similarity=0.426 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
=|-++++|+.+-..|..+++.++.....|..++++|+.|...+.++|..|-|.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999888653
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.87 E-value=0.035 Score=47.83 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+.+++.|+.+++.+..|+..|+.++..++.+++.+..++..|++++..|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666666666666666666666655
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.52 E-value=0.054 Score=40.71 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.-|.+|.+|..-|..|.+||..|+.+++.|.+||..|+.
T Consensus 24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 347899999999999999999999999999999999973
No 20
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.50 E-value=0.068 Score=39.64 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018676 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
+++-+||.++|+||.|=++.++...+ --..-.+||.+|+--|++++.--++..+.
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~---------------------vaaaks~en~rlr~l~kqmcpsldvdsii 58 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYRE---------------------VAAAKSSENDRLRLLLKQMCPSLDVDSII 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHCTTCCHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhcccchHHHHHHHHhCCcccccccC
Confidence 34567999999999987765544322 22345677888888888888665555443
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.36 E-value=0.047 Score=44.94 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 306 RLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..+++++.|+.|+.+|+++|..|..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777888888887777754
No 22
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=95.28 E-value=0.068 Score=38.54 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++++..|+.-|..|..++..|+..|..++.|+.+|+.-|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999988765
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.11 E-value=0.21 Score=50.25 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++++.++.+.|+.|+..|+.+++..++...+|+.|+..++++|+++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666666666666666666666666666654
No 24
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.26 Score=43.29 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018676 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+.-+.+..++.++.+...++.=.....++.+-..-++.|+.|...|+-++..+..+...|+.||..|-+++.+..+.+
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qE 140 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKE 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544444555666666778899999999999999999999999999999988887665443
No 25
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=95.00 E-value=0.057 Score=39.98 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++++..|++.|.+|..++..|+..|...+.|+.+|..-|++
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999987765
No 26
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.94 E-value=0.026 Score=37.65 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3568999999999999999999988754
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.82 E-value=0.14 Score=51.61 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=3.1
Q ss_pred hhchhhcC
Q 018676 334 VANLEQSN 341 (352)
Q Consensus 334 ~~~L~~~~ 341 (352)
+..|++.+
T Consensus 574 ~~~l~~~~ 581 (597)
T 3oja_B 574 VKQLEAKK 581 (597)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 33444333
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.77 E-value=0.036 Score=37.13 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5678999999999999998888887754
No 29
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=94.51 E-value=0.16 Score=35.69 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-+.+|+.+|..|+.||+.|+++.---+.-+.-|+.|...|+.+|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999887777778888888888887764
No 30
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.18 E-value=0.079 Score=35.90 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++.+||.+|+.|-.+|..|..++.+|+.-.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567899999999999999999988876543
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.12 E-value=0.3 Score=41.92 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+++++.++..|..++..++.+++.+++++..|+.++..|..++.+|
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555544
No 32
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=94.12 E-value=0.45 Score=38.37 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 273 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 273 RrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|-|++-+-|...=..+- + .+...|..++..|..+.+.|..||.++..++..+.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr--~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKR--V-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444322211 1 23455666666666666778888888888777664
No 33
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=94.11 E-value=0.087 Score=41.62 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|+.+.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888888888877777777777766666554
No 34
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=94.06 E-value=0.25 Score=39.31 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..+|..|++++..|+.+|..|++-....
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998766544
No 35
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=94.01 E-value=0.14 Score=40.16 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+++++||.++..++.-..+|-..|...+.++..|+.+...|.++|..+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57889999999999999999999999999999999999999999988763
No 36
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.01 E-value=0.067 Score=35.81 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5678999999999999999888888754
No 37
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=93.80 E-value=0.072 Score=36.09 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++.+||.+|+.|..+|..|..++.+|+...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467899999999999999999998886543
No 38
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=93.59 E-value=0.29 Score=41.26 Aligned_cols=42 Identities=33% Similarity=0.427 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+|+.|+.|+..|..+|..+..+.++|+.+|..|..+|..-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 345777888888888888888888888888888888877654
No 39
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=93.58 E-value=0.09 Score=35.01 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 568899999999999988888887754
No 40
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=93.55 E-value=0.18 Score=39.83 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..+|+.+++++..|+.||..|++-+...
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999998888776665
No 41
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.55 E-value=0.29 Score=35.63 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
+.+|+.++..|...|..|...+...+.++..|..|...|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666655555555444444433
No 42
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=93.52 E-value=0.11 Score=35.29 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 294 SNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
-.||+.|..+|+.-.+++..|+.||.+|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 468999999999999999999999999875
No 43
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.49 E-value=0.53 Score=37.66 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
++++|+.+-..|+.++..|..++..|+.-+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.35 E-value=0.49 Score=34.86 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..+..|+.+...|..+...|..++..|+.|+..|+..|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666677777777777777777776666655
No 45
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.27 E-value=0.098 Score=35.08 Aligned_cols=28 Identities=14% Similarity=0.461 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678999999999999999888888754
No 46
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.26 E-value=0.071 Score=50.28 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
++.+|+.++..|...|..|..++..+++++..|+.|+.+|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666666666555555555555554443
No 47
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.22 E-value=0.7 Score=36.22 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
++++|+.+-..|+.++..|..++..|+
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 48
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.19 E-value=0.34 Score=35.21 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.++..|+.++..|..++..|.+.+...+.|...|+++|.+|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677788888888888888888888888888888888888773
No 49
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=93.17 E-value=0.1 Score=34.96 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678899999999999999888887754
No 50
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.15 E-value=0.15 Score=37.31 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 298 RNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..|+.++..|+.++..|..++..|+.+|.+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444445556666666666553
No 51
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.01 E-value=0.29 Score=37.98 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|+.+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777766666666666655543
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.00 E-value=0.9 Score=33.75 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+..|+.+...|..+...|+.++..|..|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555544
No 53
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=92.85 E-value=0.12 Score=34.57 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678999999999999999998888764
No 54
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=92.70 E-value=0.009 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018676 257 RELKRQKRKQSNRESARRSRLRKQA 281 (352)
Q Consensus 257 rE~KR~RRk~~NRESARrSR~RKq~ 281 (352)
..++..||+-+||.+|++||+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4467889999999999999999864
No 55
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.65 E-value=0.15 Score=33.95 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567899999999888888888877754
No 56
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=92.63 E-value=0.47 Score=39.15 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..++++++.+..|+.|+....++++.++..+..|..+...|+.+|..
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555556666666666666666666665554
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.53 E-value=0.24 Score=41.36 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|+.++..|+..+..|+..|..|...+..|+...+....-|.++.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 44455555555555655655665555555555555555555555443
No 58
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=92.48 E-value=0.33 Score=44.42 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 296 ENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
||..|..+|..|++++..|+.||..|+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.25 E-value=0.25 Score=36.01 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
..++.|+.||..|+.++..|+++++.|..+..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777777777776543
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=92.09 E-value=0.5 Score=33.07 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..|+.+-..|..++..|.+.+..|..||.-|+.-|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34455555555555555555555555555554433
No 61
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=92.07 E-value=0.84 Score=35.07 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..+..|+.+...|......|..++..|+.++..|..+|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333333333333333
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.97 E-value=0.9 Score=50.41 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q 018676 314 LTSENNSIKEDLSRL 328 (352)
Q Consensus 314 L~~EN~~Lk~~L~~l 328 (352)
|+.||..|++++.+|
T Consensus 1028 L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 63
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=91.55 E-value=0.23 Score=32.35 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++..|+.+|.+.+.||-+|.+++..|..+|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356788888888888888888888887765
No 64
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.6 Score=46.26 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
.++++++|+++++.|+.++..|..++..|++++...+.+-+.|..+|.+|.|.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45677788888888888888888888888888888888888888888888763
No 65
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=91.35 E-value=0.77 Score=35.54 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
...|+.++..|+.+.+.|+.+|..|+.+|..|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4457777777778888888888889888888764
No 66
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.18 E-value=0.89 Score=34.03 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-..-+.....|..++..|+.++..|..|+..|+++|.
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666665543
No 67
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=91.16 E-value=1.8 Score=34.15 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
-+-+|..+++.|+.|+..|+-+++.+..++..|....+.+-..|........++.|+.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~~~~ 78 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQLEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 3466888888888888888888888888888888888888777766555555555443
No 68
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=91.06 E-value=0.65 Score=46.27 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
.+++++|+++++.|+.++..++.++..+++++.+...+.++|..+|.++.|.
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3567788888888888888888888888888888888889999999998763
No 69
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.05 E-value=0.58 Score=42.36 Aligned_cols=6 Identities=67% Similarity=0.778 Sum_probs=2.3
Q ss_pred hhchhh
Q 018676 334 VANLEQ 339 (352)
Q Consensus 334 ~~~L~~ 339 (352)
|++|++
T Consensus 111 ireLEq 116 (189)
T 2v71_A 111 VRELEQ 116 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 70
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.61 E-value=2.8 Score=35.22 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
....-+.++.+|+.+|..|+.|...-+........+|+.|+.|+..|
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777776666655555555555555544
No 71
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.60 E-value=0.26 Score=46.49 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcC
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSN 341 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~ 341 (352)
+.++..|+.++..|..++..|..++..++.|+.+|+++|.+|.. +..+..+...+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~ 108 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATH 108 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEc
Confidence 67889999999999999999999999999999999999999976 44455544443
No 72
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=90.35 E-value=3 Score=33.02 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|=.||=.+-.|-| ..+.+++...+..|..+.++|.....++..|..|...|+.+|..|+.
T Consensus 14 eLQSALeaEIqAK---Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTR---QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444 24456677788899999999999999999999999999999998753
No 73
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=90.15 E-value=1.9 Score=31.72 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
....|..++..|..++..|..+...|..++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 74
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=89.90 E-value=3.3 Score=32.10 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=38.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 263 KRKQSNRESARRSRLRKQAECEELQARVETL---SNENRNLR---DELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~L---e~EN~~Lr---~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+.....+-|+-|.+=...+.+|..-|-.. ......|. .-|..|+.+...|..|+..|+.++...
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666666566677776643321 01112222 235667777788888888888887765
No 75
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.69 E-value=1.5 Score=35.33 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+++.+|+.+-..|..+...|..+...|
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444443333333333333333333
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.58 E-value=1.5 Score=33.98 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
...+++|+.++..++.++..|+.++..+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555444433
No 77
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.58 E-value=1.1 Score=34.99 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
++|+.++..|+.....+..-|+.|.........+...|..+|..|. +.+..+...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~ 64 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRST 64 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Confidence 4788999999999999999999999999999999999999999997 666666543
No 78
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=89.53 E-value=1.5 Score=34.90 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..+|+.+++++..|+.||..|++-....
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888765543
No 79
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.48 E-value=2.4 Score=30.54 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+..++++..++..++.+...++.++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555544
No 80
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=89.37 E-value=0.59 Score=36.67 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|-.+|+.|..|+..|+.++..+++-..+++..+..|.++|+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555554444444444444444443
No 81
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=89.27 E-value=1.8 Score=34.17 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-+..|..+...|..+.+.|+.+|..|+.+|..|.+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35567777777777888899999999999988864
No 82
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=89.26 E-value=0.49 Score=31.68 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+|+.+|+.|-.++..|..++.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677888888888888888888877754
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=89.16 E-value=4.8 Score=31.59 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...+++++.|.+--+.|..=-..|..-|.+|+++...|......|+.+...|.
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788887777777777777888888888888888888888888888775
No 84
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=89.16 E-value=0.64 Score=31.24 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++.++...++++++|+.+|..|.+++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 44555555556666666666666666554
No 85
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.07 E-value=3.7 Score=34.18 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 018676 266 QSNRESARRSRLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECE-------KLTSENNSIKEDLSRL 328 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~---EN~~Lr~el~~L~~e~~-------~L~~EN~~Lk~~L~~l 328 (352)
..|=.+|-+.=..|+..|++|++++..++. .+.-|+.++...+.... .|-.|..+|..+|..|
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 345556666666678888888887777777 55567777766655544 3444444555544444
No 86
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=88.81 E-value=1.4 Score=32.90 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.-..+...|+.+...|..+...|+.++..|+.|+..|+.-|.+
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345677788888888888888888888888888888877654
No 87
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=88.78 E-value=1.4 Score=32.14 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 304 LQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|..+...|+.||..|+.+|..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555666665555553
No 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.71 E-value=1.5 Score=48.61 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+++.++..|+.|+..|+.++..+.++...|+.++..|+++
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~ 1020 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554444433
No 89
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.06 E-value=2.5 Score=34.53 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 305 QRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..-+.+...++..|..|+++|.+.
T Consensus 72 a~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 72 ADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566777888888888888764
No 90
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=88.05 E-value=0.22 Score=46.41 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|.++.+.|++||..|+.++.. ++.|+.||.+|++.|.-.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESE----VADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCc
Confidence 334444444444444444433 467888999998876643
No 91
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=87.95 E-value=4 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|..-+.++..|+.+..+++..|..|
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444445555555544
No 92
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.70 E-value=7.1 Score=34.71 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.-=+.-|+.|.+-.+.+.+|+.++..|+.|...++..+ ..+..+|..|.++|..|.
T Consensus 75 Qa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~-------~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 75 QAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL-------EKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555555544444443 444455555555554443
No 93
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.62 E-value=2.9 Score=32.34 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+++.++.++...+..+..+-.+|..|+..+..|+.+...+.++|..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555444443
No 94
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.41 E-value=0.69 Score=35.83 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
||..|+.++..|+.+...|+.++..|+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 95
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.06 E-value=7.8 Score=32.23 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018676 307 LSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+.++..|+.++..|+..|.+|
T Consensus 40 Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 96
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.83 E-value=3.7 Score=33.69 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
-..+.+|+.+|+.|+.||+.|+.+.+..
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666555443
No 97
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.71 E-value=11 Score=30.31 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRN 299 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~ 299 (352)
.++-.++..|.+++..|+.+...
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 98
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=86.52 E-value=1.2 Score=34.63 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
|+.+...|..+++.|+.||..|+.+|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444555555555555554
No 99
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.44 E-value=5.8 Score=32.20 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018676 265 KQSNRESARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
...|-.+|-..=..|+..|++|.+.+..++ ..+..|+.++...+.....=++.-.+|.++...|. +.++.|...+
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~--~ql~~lq~q~ 84 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ--EQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHH
Confidence 345666777777789999999998888888 56677888888887776665555555555555444 4444444433
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.41 E-value=1.4 Score=45.40 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.++|++++..|+.+...-...|..|+..++.++.+..+|
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555544443344444444444444444433
No 101
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=86.16 E-value=1.4 Score=40.47 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
++.|+.+++.|+.++..|+.++.++..+++-++....+=++++.+.....-+.+|+..+|
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlD 120 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLD 120 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455555555555555555555555555555555555555555555555555544433
No 102
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.98 E-value=10 Score=29.19 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+.|..--..-...+.+++.+...++.+...|..++..|..+++.+.........+|..-
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555666777777778888888888888888888887777777777766654
No 103
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=85.92 E-value=3.3 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
+..|+..|-+|...-..|..-+..|+.|..+|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 333333343333333333333334444444333
No 104
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=85.89 E-value=4.3 Score=31.38 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++.++..+..|+.+...++.++.....+++.|..=...|-.+|...
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777777777776666666666554
No 105
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=85.87 E-value=2.3 Score=33.36 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
|.+++.|+.+++.|+.+...|..++.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888888888888888877764
No 106
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=85.86 E-value=4.8 Score=28.97 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|++.+..+..+...++.++..++..+..+..+...+++.|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666777777777777777666666666666653
No 107
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.82 E-value=3.4 Score=32.35 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 285 ELQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el-------~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+-++|+.|-.||.+|...- ..|-.+.+.|..|+..|+.+|..+
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456666666666665532 222334445555555555555544
No 108
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=85.75 E-value=4.4 Score=29.47 Aligned_cols=44 Identities=2% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.+++|..+|..|..+...|..++..|+.+......|-.+--++|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666667777666666666666666666666555555554444
No 109
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=85.70 E-value=0.46 Score=37.13 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
+|.+.|+.+|..|.+++.+|+.||..||. +..++.+..|...+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l 57 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL 57 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence 35566777888888888889999988875 45566666665554
No 110
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.59 E-value=3.8 Score=32.88 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018676 278 RKQAECEELQARVETLSNENR 298 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~ 298 (352)
++-.++..|..++..|+.+..
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333
No 111
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.42 E-value=13 Score=29.90 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+.+.++.++..++.++..+-.+|..|+..+..|+.+...+.++|.
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443333
No 112
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.37 E-value=5.1 Score=35.61 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
|+||++ .+|...+..++..+.+|+..+..|......|..|+..|..+|.
T Consensus 31 rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 31 RLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366665 4555555555555555555555555555555555555554444
No 113
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.24 E-value=1.4 Score=43.61 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-++++++|+++++.|+.++..|..++...+.....|.++...|+..|+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIr 62 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR 62 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 344456666777777777777777776666666677777666665544
No 114
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=85.23 E-value=2.7 Score=34.67 Aligned_cols=51 Identities=10% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
-+++-|..+++.++....+|+.++....++++.++..+..|+.++..+...
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999988753
No 115
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=85.21 E-value=1.5 Score=34.02 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|+.-+....+|.......|..|..++..+..++..|+.+|-+++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333444444555555555666666666666666553
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.01 E-value=13 Score=33.50 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 018676 292 TLSNENRNLRD 302 (352)
Q Consensus 292 ~Le~EN~~Lr~ 302 (352)
.|+..+..|+.
T Consensus 99 ~l~~~~~~l~~ 109 (189)
T 2v71_A 99 QTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 117
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=84.94 E-value=4 Score=31.60 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+-+.++..|+....--.+-.++|..++-.|--||.-|.++|.+|.
T Consensus 28 ~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 28 KSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3334455555555544445567777788888999999999988775
No 118
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.91 E-value=4.7 Score=33.98 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+.+...-+.+..+|+.||..|.++++.+..|..+|+.+...+
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 33333333344466677777777777777777777777666554
No 119
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=84.83 E-value=4.9 Score=31.67 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
..=+..++.|+.+|..|+..++.+.-+|+.|++....+..+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555544444444444444444433
No 120
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=84.78 E-value=1.9 Score=28.01 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 298 RNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
..|++++..|+.++..|+-|...|+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 121
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.64 E-value=7.3 Score=34.13 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
-++.|..++..|+-++..|..++..|+.|+..|..
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666655553
No 122
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=84.61 E-value=3.9 Score=31.66 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.+++.-+.+-..++.++..+.+.+..--.|...|+..|.+|
T Consensus 24 ~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 24 SEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444455555554443
No 123
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=84.41 E-value=1.7 Score=39.32 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 292 TLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.|..||..|..+++....++..|+.
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.25 E-value=9 Score=37.59 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 018676 302 DELQRLSE 309 (352)
Q Consensus 302 ~el~~L~~ 309 (352)
.+++.|++
T Consensus 442 ~~~~~~~~ 449 (487)
T 3oja_A 442 HKETQLAE 449 (487)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333333
No 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.22 E-value=8.3 Score=37.85 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018676 306 RLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
..+++.+.|+.||++|+.+|.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhh
Confidence 333333333333333333333
No 126
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.61 E-value=4.3 Score=31.91 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.+++.-+.+-..++.++..+.+.+..--.|...|+..|.+|
T Consensus 30 ~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 30 RAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444445555444443
No 127
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.53 E-value=13 Score=30.90 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.+.++..|......|..+|..|....+.....|..|...-..+
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443333
No 128
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.33 E-value=8.9 Score=37.46 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 304 LQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|++|+.++..|..+...+++++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343444444444433
No 129
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.29 E-value=1.9 Score=43.03 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+|..+++.|+.+...|..+.+.|+.+...|+.|...|+++++.++.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555666666666666666666666667777777777777777754
No 130
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=83.28 E-value=1.6 Score=40.69 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEEL-------QARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeL-------e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
+|-||.++-=.==-|+|+-|...++++ ..+++.|+.||..|+.+|+.|+++..+.+.+
T Consensus 120 ~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 120 KRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 577776544333344555555544444 4445555555555555555555444444433
No 131
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.23 E-value=12 Score=34.26 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDE 303 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~e 303 (352)
|..+++.++.++..|..+
T Consensus 95 L~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 95 LNIEEDIAKERSNQANRE 112 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 132
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=83.15 E-value=3.2 Score=30.49 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+++..+..|+.+...++.++.....+++.|..=.-.|-.+|...+
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567778888888888888888888888888877777777776653
No 133
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=82.95 E-value=12 Score=38.26 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 276 RLRKQAECEELQARVETLSNENRN----------LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~----------Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+.-+.++++|+.+...+..+... |..++..|++++..|+.+...|.++|..+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554433 44444444444555555555554444433
No 134
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=82.89 E-value=2.4 Score=33.45 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
.||..|+.+...|..+...|+.+...|+.++.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444444444433333333
No 135
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=82.66 E-value=5.3 Score=28.38 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+||++|+.|+.-...|+.++.+|-.++.. -...|+.+|..|+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57788888887777777777776555443 3456777776664
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=82.61 E-value=8.3 Score=32.08 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++-..|.+++.|+.++.+|+.+|+....-...|..+|..|...+...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~ 58 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 444555667777777777777777777666667777777776555443
No 137
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=82.51 E-value=2.8 Score=40.63 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.++..||..|...+.+...|+..|..++.+++.|..+...|+.+|...
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~ 59 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355666777777777777777777777777777777777777776544
No 138
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=82.51 E-value=1 Score=28.31 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 292 TLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.|++.|..|++++..|.-++..
T Consensus 4 rlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 3444555555555444444433
No 139
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=82.48 E-value=5.3 Score=27.88 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..|..+.+.|+.....|+.+|+.|.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666677777776664
No 140
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=82.43 E-value=1.2 Score=32.51 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.++++...++.|..||..|+.++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555443
No 141
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=82.29 E-value=9.4 Score=30.36 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 296 ENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
|...-..+|..|++++..+..-...|
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444333333333
No 142
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=82.29 E-value=14 Score=27.80 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.-..+||+-|-..=.. .+++|...+..-..+....+.+|..|+..++.|+.|...|+
T Consensus 20 ~ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 20 SVAAKNLQEAEEWYKS---KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566555442222 24566666666666666667777777777777777766654
No 143
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.25 E-value=18 Score=28.99 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=27.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++|+....-....+.+++.|..+=..+-.+-..++.++..+..+...|.++..-...+|.+|
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444333333333444333333333334444444444444444444444444444444
No 144
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.24 E-value=8.7 Score=35.26 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+++.+|+.++..|+.+...+..++..++.++..++.+...+++++.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333333333
No 145
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.21 E-value=2.4 Score=43.73 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
+|+.++..|++++.......+.|+.-|++++ ..|..|+.-|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~--~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL--VDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4555555555555544444455554444444 3344444433
No 146
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=81.60 E-value=16 Score=28.55 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-...++.++..+..|+.+...++.++.....+++.|..=...|-.+|...+
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345667788888888888888999998888888888888778887776654
No 147
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=81.48 E-value=7.1 Score=30.87 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
+=+.....++.++...+..|..|..++..|+++...|+.+
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344556667788888888888888888888877776654
No 148
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=81.34 E-value=18 Score=28.71 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+...|+.+|..+..+...|..|...|.+.+.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333
No 149
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=80.87 E-value=18 Score=28.09 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|-...+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...+
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455677888899999999999999999999999988888888888877653
No 150
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=80.67 E-value=0.76 Score=42.88 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++.+..+.+.+..+++.|+.++..|+.+...|+.++
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 151
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=80.62 E-value=1.2 Score=34.30 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++|.+++..++..+..|..-|..-...+..|..+|.-||++|+.+.
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 5566666666777777777776667777778888888888887775
No 152
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.27 E-value=18 Score=30.11 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|+.++..|+.....+...+..|..+...|..+...|+.+|..+
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 153
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.23 E-value=12 Score=38.11 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+.++..|++++..|+.+...|.++|..+
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555443
No 154
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.17 E-value=24 Score=29.34 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777777777777777777777777777666676666554
No 155
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=80.06 E-value=7.7 Score=38.93 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+.++..|++++..|+.+...|.++|..+
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 156
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.71 E-value=22 Score=28.39 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.+.|+.++..++.++..+-.+|..|+..+..|..+...+.++|.
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 157
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.62 E-value=3.7 Score=33.64 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
.+..|..+++.|+.||..|++++..|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444333
No 158
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.55 E-value=12 Score=31.31 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+-+..|..|+..+..|..+|..-+...+....||..|+.++..+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888888999998888888899999999999999774
No 159
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.42 E-value=21 Score=28.02 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+-.....+|+.+...|..+...|..++..+...|..|......|-.+|..+.
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556788888888888888888888889999999998888888888874
No 160
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.27 E-value=6.5 Score=27.84 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
||+.-+.|+.....|+.++.+|..
T Consensus 22 lerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 161
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.04 E-value=4.5 Score=31.41 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.+||..|+.+...|+.|+..|+.++..|+.++++
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777777777777666554
No 162
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.02 E-value=26 Score=28.97 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666554
No 163
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=79.01 E-value=7.6 Score=28.19 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|..+...|..++..|+.+...|+.+...-+++...-
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778888888877777777777777766665543
No 164
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.73 E-value=27 Score=28.99 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+.-|+.+++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 466777777777777766666777788888888888888888887665
No 165
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=78.64 E-value=3 Score=32.34 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
.||..|+.++..|+.++..|+.++...
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777777766544
No 166
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.19 E-value=5.3 Score=31.10 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++||.+|+.|+.-...|+.++.+|-.++... ...||.+|..|.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE 45 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVE 45 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567777777777777777776665554432 334444444443
No 167
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.77 E-value=4.6 Score=27.01 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|+.|..+|++-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455566666666666677777666654
No 168
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=77.75 E-value=3.4 Score=27.72 Aligned_cols=26 Identities=12% Similarity=0.251 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
.+|...++.|+.|++++..|+.+.+.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 34444444444444444555444443
No 169
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=77.72 E-value=17 Score=27.27 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..+++.|+.....-...+...+.++..|+.....|..+|..+.|
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45677777777777777777888888888888888888877653
No 170
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=77.67 E-value=13 Score=29.46 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+-+.|..+++.++.|+..|+.++..| ..|-.+-..|.+-|..|.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L----~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 33455555555555555555555554 334445555666666554
No 171
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.24 E-value=4.2 Score=40.39 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+++++|+++++.++.++..|.+++.....+...|.++...|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3445666666666666666666666666666666666666665443
No 172
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=76.46 E-value=27 Score=34.56 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.++..|++++..|+.+...|.++|..+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666665544
No 173
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.22 E-value=21 Score=36.32 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018676 280 QAECEELQARVETLSNENRNLRD-----------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~-----------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
+.++++|+.+...+..+...|+. +.+.|..+...|..+...|.+++.++. +.+..+...++.
T Consensus 83 ~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~--~~l~~~l~~iPN 155 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE--EQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 34444444444444444444331 233444455555555555555555554 445555555554
No 174
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.10 E-value=30 Score=28.11 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..|+.++...+.+...|..++..-+..+...+.++..|..+|.+|
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 175
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=75.97 E-value=7.9 Score=32.06 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEELQARV-------------ETLSN---ENRNLRDELQRLSEE---CEKLTSENNS 320 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv-------------~~Le~---EN~~Lr~el~~L~~e---~~~L~~EN~~ 320 (352)
|+.+|+...-.+-|+-|.+=...+.+|..-| ..|+. -...|+.++..|+++ ...|+.+|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~ 102 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRH 102 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666566667766532 22322 123355555555443 4567788888
Q ss_pred HHHHHHHhc
Q 018676 321 IKEDLSRLC 329 (352)
Q Consensus 321 Lk~~L~~l~ 329 (352)
|..+|+.|+
T Consensus 103 L~~riqeLE 111 (118)
T 4ati_A 103 LLLRVQELE 111 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 888888775
No 176
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=75.66 E-value=3.6 Score=39.39 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 289 RVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+++.|+++|+.|+.++++|+.+.+.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444444444444443
No 177
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=75.54 E-value=7.8 Score=29.93 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|...|..|..|++.|..++..+++++..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655554
No 178
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.46 E-value=32 Score=33.49 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|.+++..-+.++++|+.|...|..+|+.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455666666666666666554
No 179
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=75.24 E-value=5.1 Score=26.04 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++..|..+|..|+..|-..++++..|+.+|
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345677777777777777777777776665
No 180
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=74.50 E-value=25 Score=28.14 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++.++..+..|+.+...++.++.....+++.|..-.-.|-.+|...+
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888888888888877777777776653
No 181
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.47 E-value=17 Score=28.76 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
-+++.+|.-+|..|+.|-.+...+|..-+.++..|..
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3556666666666666655555444444444444433
No 182
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.18 E-value=31 Score=27.37 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.++.+|..+|+.+..++..|..++..|..+...
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444333333
No 183
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=74.16 E-value=1.2 Score=43.20 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++|..||.+|..++++...|+..|..|+.+++.|+.....|..+|...
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567778888888888888888888888888888888888887776654
No 184
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.85 E-value=1.6 Score=43.73 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
..||..+...+.+...|+..+..++.+++.|+....+|..
T Consensus 94 ~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 94 IRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444433
No 185
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=73.69 E-value=9.9 Score=29.33 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSE-NNSIKEDLSR 327 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E-N~~Lk~~L~~ 327 (352)
+|...|..|..|+..|..++..+++++..+..| ...|++.|..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek 46 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEK 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777766533 2334444444
No 186
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=73.68 E-value=7.6 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..+++.|..+...|+.|..+|++.|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4455555555555666666666666554
No 187
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=73.47 E-value=4.7 Score=25.85 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L 307 (352)
|..-+..|+.||.+|+.++++|
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555544443
No 188
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.42 E-value=29 Score=30.71 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018676 303 ELQRLSEECEKLTSENNS 320 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~ 320 (352)
+|..|.+++..|+.+...
T Consensus 114 kI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 189
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=72.74 E-value=38 Score=27.75 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=28.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 263 KRKQSNRESARRSRLRKQAECEELQ---ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe---~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|..+|+.+-+.--.+=.+....|+ .++...+.+..+=.+|+.++..+.+.|.+.|-.|..++..+
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~ 102 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566676666533333222222222 23333333333333444444444455554444444444433
No 190
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=72.71 E-value=9.5 Score=34.76 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+..|..+++.|+.++..|..+++.+
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 191
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=72.52 E-value=12 Score=34.10 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+++|+.+-....++...|....+.|.+|+..|+..|+.|.|..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 4456666677777888888888999999999999999999854
No 192
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=72.40 E-value=23 Score=27.19 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+-|...+..+..|+.++..++.+.+....+...|-.-...|..|...-+.-|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778889999999999999999888999998888899999888776554
No 193
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.24 E-value=15 Score=31.26 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
.++|+.++..|+.+|..|+.++..++.++..|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888887777544
No 194
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=71.89 E-value=5.6 Score=30.36 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
..|...+.+||..+..-..++.+|+.++.+++.-+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888888888887665433
No 195
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=71.86 E-value=0.51 Score=39.16 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|..++..|..+.+.|..||..|+.++..+
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555544444
No 196
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=71.77 E-value=11 Score=27.78 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
-..|..+|..|+..|.+..+|+.+|.
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999888888874
No 197
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.65 E-value=6.8 Score=39.01 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.++..|+++++.|+.|++.|+.++..|++++..++.|...|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456788889999999999999999999999999999888765
No 198
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=71.27 E-value=16 Score=30.12 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+++.++..++..|..+...|+..++.|.++.+
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555433
No 199
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=71.25 E-value=13 Score=33.67 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+...|.++++....|+..|+.+|..|+++...
T Consensus 28 En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 28 ENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444445555555555555555555544433
No 200
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=71.03 E-value=2.8 Score=26.37 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018676 292 TLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
.|+=||..|.+++..|++++..|
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 45556666666666555555544
No 201
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=70.98 E-value=2.5 Score=32.98 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+|.|..++..|+..|.+|..|...|
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 202
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=70.76 E-value=2.3 Score=35.47 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
.-+|+|+.++..|+-||..|+++|..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999998863
No 203
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=70.70 E-value=26 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 304 LQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
...|+.++..|+.+...|.++|..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 204
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=70.48 E-value=8.2 Score=34.72 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
.++-|=.++..|+.+|..|++++++|+.+.+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 205
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.08 E-value=9.4 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|+.|..+|++-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455556666666666666666666554
No 206
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=70.07 E-value=7.7 Score=30.75 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L 307 (352)
++.+...|+..|..|..++.+|
T Consensus 54 ~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 54 LENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHH
Confidence 3444444444444444444444
No 207
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=69.93 E-value=37 Score=26.51 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.+...+.+++.|+.-..+|+.=-..|..-+..|..|-..|...|..|.
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444443
No 208
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=69.79 E-value=10 Score=36.67 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
..+..|+..++.++.....|..+|..|+.
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 209
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=69.79 E-value=4.4 Score=26.02 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 018676 307 LSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|..-+..|+.||.+|++++++|-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445778888888888887763
No 210
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=69.75 E-value=45 Score=27.38 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..++.+...|++.+..+.-....|+.+...|+++|.=|
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666655555556666666666665544
No 211
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=69.54 E-value=16 Score=35.89 Aligned_cols=53 Identities=26% Similarity=0.460 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|=+..++.|..+++.|......|..+|......+..|..+...|+-+|..|+
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 33444555666666666666666666666666666666666666666555554
No 212
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.45 E-value=40 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 306 RLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.-+.+...++..|..|+.+|.+-.+
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~ 129 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDT 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777788888888877654
No 213
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=69.45 E-value=28 Score=27.62 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 280 QAECEELQARVETLSNENRNLRDE------------LQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~e------------l~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++++..|+.++..|+.+...|+.+ .-.+-.++..++.--..|...|..++|
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 345555666666666666555543 222333444444444556666666665
No 214
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=69.42 E-value=0.08 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 018676 258 ELKRQKRKQSNRESARRSRLRKQ 280 (352)
Q Consensus 258 E~KR~RRk~~NRESARrSR~RKq 280 (352)
-++..||+-+||.+|++||+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 35678889999999999999985
No 215
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=69.36 E-value=35 Score=31.16 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++-+.|..+|+.|+.|+..|+.++..| ..|-.+..-|..-|..|.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eL----keLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKEL----AEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 444566666777777777776666665 3344455555666666554
No 216
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=69.23 E-value=16 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.+-|-+|...|+-+++.|..+..+-+-....-+++|.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~ 57 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344445555555555555555554444443333333333
No 217
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=69.16 E-value=18 Score=33.91 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..+|.+|..+++.|...-..+.++|..|+++-..|+.++..++.+|..++-
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999988863
No 218
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=69.16 E-value=7.2 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 300 LRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
|..+++.|-.+...|+.|..+|++-
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444445555555555543
No 219
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.87 E-value=11 Score=28.77 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 271 SARRSRLRKQAECEELQARVET 292 (352)
Q Consensus 271 SARrSR~RKq~~~eeLe~kv~~ 292 (352)
.-|+-|.+=...+++|..-|-.
T Consensus 19 ~Er~RR~~in~~f~~Lr~lvP~ 40 (80)
T 1hlo_A 19 LERKRRDHIKDSFHSLRDSVPS 40 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHCcC
Confidence 3333333334455566554443
No 220
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=68.70 E-value=10 Score=25.85 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 302 DELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 302 ~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++...-.....|+.+|..|..+|..
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444456677777777776653
No 221
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.54 E-value=18 Score=28.75 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+..|+.....|..++..|..++..+..+...|+..|..+.+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556666667777777777777777777777776654
No 222
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.42 E-value=12 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..+++.|-.+...|+.|..+|+..|.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3444555555555556666666665554
No 223
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.98 E-value=21 Score=44.18 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
++++..+|..+|..|+.+++.+..|...|+.++.
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443
No 224
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=67.94 E-value=21 Score=31.95 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 018676 318 NNSIKEDLSRL 328 (352)
Q Consensus 318 N~~Lk~~L~~l 328 (352)
|..|+++|..+
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 225
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=67.74 E-value=14 Score=33.28 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
...+.+|++++..|+.+|+.|+.+.+...++.
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666555544
No 226
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.70 E-value=32 Score=26.90 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+..|..+...|..+......++..|......|......|.++|
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555555555555555555555555554
No 227
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.67 E-value=5.3 Score=28.90 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
.+++.|+.++..|+.++..|+..|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887777655
No 228
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.14 E-value=12 Score=25.05 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|+.|..+|++-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444555555555566666666666544
No 229
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=67.13 E-value=13 Score=24.13 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
.||+.+..|+.-.++|++++.+|.+..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777765543
No 230
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=66.81 E-value=34 Score=26.83 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|..+|+.++.|+..|+.+...| ..|..+-..|.+-|.+|.
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L----~el~~~~~~laevl~~l~ 78 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERLS 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 344445555555555555554444 445555556666665553
No 231
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.66 E-value=30 Score=35.24 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDEL 304 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el 304 (352)
|..+++.|+++-..+.++|
T Consensus 45 ~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.64 E-value=5.6 Score=39.76 Aligned_cols=46 Identities=39% Similarity=0.431 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+|+.++..|+.|...|+.++.+++.++..|+.+...+++++..+..
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~ 74 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4455555566666666667777777777777777777777776654
No 233
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=66.60 E-value=24 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+.|+.+++.|+.....|+.++..+..+++++
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 234
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=66.35 E-value=42 Score=33.17 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018676 305 QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
+.|..+...|..+...|.+++.++. +.+..+...++.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 103 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKE--ARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3444455555555555555555554 455555555554
No 235
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=66.06 E-value=20 Score=32.01 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
-++.|..|+.+|..|..+|...++++..+..+.
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554443
No 236
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.84 E-value=14 Score=36.71 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++.++||+++..|+.....-...|..|+..++.++.+..+|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776555544466666666666666666665554
No 237
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=65.82 E-value=56 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRD------------ELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~------------el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
||..--.++.+=-.+++.|=.+|+.|+.-.+.||. +++.+..++..+..+...|.+.|.
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666667777777778877777777776 456666666666666666655544
No 238
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.60 E-value=65 Score=27.61 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=44.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQ---------------AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq---------------~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.|.|+.+-||.-+---|..-. ...++..+++..++.+......++......|..|..+...+-..
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777666554322 22345566666777777777777777777777777777666666
Q ss_pred HHHhc
Q 018676 325 LSRLC 329 (352)
Q Consensus 325 L~~l~ 329 (352)
|+.|.
T Consensus 117 lKsLE 121 (147)
T 2b9c_A 117 LKSLE 121 (147)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 66654
No 239
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=64.92 E-value=14 Score=34.25 Aligned_cols=44 Identities=9% Similarity=0.275 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+++..|+++++..+.|+..++..+...++...+|+..-.++.-+
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 36688889999999999999888888888777777776665543
No 240
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=64.71 E-value=33 Score=27.67 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..+|..+..+++.|+.+...|...|.++.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777788888877777777774
No 241
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=64.62 E-value=16 Score=26.97 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 018676 313 KLTSENNSIKEDLSR 327 (352)
Q Consensus 313 ~L~~EN~~Lk~~L~~ 327 (352)
.++.|...|.++|.+
T Consensus 52 kveeevkkleeeikk 66 (67)
T 1lq7_A 52 KVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555555554
No 242
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.62 E-value=6.5 Score=28.60 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 304 LQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|..+..+++.|..||..|+++|..+.
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666554
No 243
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=64.52 E-value=42 Score=27.49 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|+..+.+|...|..|.++.-.|+.....-.-+|.+|.
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~ 83 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLR 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHH
Confidence 456666677777777776666666554444444444443
No 244
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.33 E-value=46 Score=29.06 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 018676 277 LRKQAECEEL 286 (352)
Q Consensus 277 ~RKq~~~eeL 286 (352)
.+=..++++|
T Consensus 82 ~~ie~ElEeL 91 (154)
T 2ocy_A 82 DKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 245
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=64.30 E-value=61 Score=33.42 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 270 ESARRSRLRKQAECEELQARVETLS 294 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le 294 (352)
|.|+|-=+|-+++|++.+.-+++++
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~ 341 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQ 341 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 246
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.63 E-value=15 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|+.|..+|++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 455556666666666666666666544
No 247
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=63.31 E-value=19 Score=27.90 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..++.++..+++.|...-..+-.+|..|.++-..|+.+...+..+|..+.
T Consensus 20 ~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 20 MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35788888899999888888888998888888888888888887776653
No 248
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=63.10 E-value=18 Score=33.43 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.+..++..|+...+.++.|...++.++++.+....+|+++
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 249
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.62 E-value=12 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
|..+++.|-.+...|+.|..+|++-|
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444455555555555443
No 250
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=62.60 E-value=32 Score=26.06 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018676 305 QRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..|++++..|..|...|...|..
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555666666666666665543
No 251
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=61.46 E-value=17 Score=36.50 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018676 281 AECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~---el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
.++++|+.+...+..+...|+. +.+.|..+...|..+...|.+++.++. +.+..+...++.
T Consensus 45 ~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 108 (455)
T 2dq0_A 45 KEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK--KKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3344444444444444433322 133455555566666666666666665 555555555555
No 252
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=61.28 E-value=47 Score=24.55 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.-+.+|+.++..++.-...|..+++.+..+.+.+..++..=++.|..|
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~L 53 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSL 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345667777777776666666666666655555544433333344444
No 253
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.22 E-value=28 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+...|..++..|+.+...|..+...|..++.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444
No 254
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=61.20 E-value=12 Score=25.01 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|..|..+|++-|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 344555555555566666666665543
No 255
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=60.92 E-value=7.3 Score=39.01 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+-+.-.+=.+++..|+.-+...+..+..|+..+......+..|+....+|..+|..
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3343333334455555666666666666677777766666666666666666665544
No 256
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=60.72 E-value=10 Score=27.14 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
+-..||.-|..|+..|..|.+.+..|...+..|+..
T Consensus 18 enaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 334556667777777777777777776666666543
No 257
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=60.03 E-value=17 Score=33.56 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSN---ENRNLRDELQRLSEE 310 (352)
Q Consensus 284 eeLe~kv~~Le~---EN~~Lr~el~~L~~e 310 (352)
.+||.++..|-+ +|..+..++..|...
T Consensus 82 ~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~ 111 (252)
T 3e98_A 82 IEMRHRLSQLMDVARENDRLFDKTRRLVLD 111 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332 555555555555443
No 258
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.03 E-value=31 Score=28.59 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+++.|+.++..|+.........+..|..+.+.|.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4555555555555544444444444444444443
No 259
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.95 E-value=42 Score=27.72 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 018676 256 ERELKRQKRKQ 266 (352)
Q Consensus 256 ErE~KR~RRk~ 266 (352)
..|+...||.+
T Consensus 35 k~Ei~elrr~i 45 (129)
T 3tnu_B 35 KHEISEMNRMI 45 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445555544
No 260
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=59.90 E-value=30 Score=27.43 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++-+.|..+|+.|+.|+..|+.++..|++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666665544
No 261
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=59.57 E-value=8 Score=38.35 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+.++..|++++..|+.+...|.++|..+
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 262
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=59.37 E-value=18 Score=32.44 Aligned_cols=7 Identities=57% Similarity=0.719 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 018676 280 QAECEEL 286 (352)
Q Consensus 280 q~~~eeL 286 (352)
+++++.+
T Consensus 66 ~Ae~eN~ 72 (197)
T 1dkg_A 66 KAEMENL 72 (197)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 263
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.34 E-value=10 Score=23.79 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 018676 312 EKLTSENNSIKED 324 (352)
Q Consensus 312 ~~L~~EN~~Lk~~ 324 (352)
..|+.|...|.-+
T Consensus 10 arlkqeiaaleye 22 (28)
T 3ra3_B 10 ARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 264
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=59.27 E-value=4 Score=37.84 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018676 290 VETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+..|.+||++|++|+..|+.+..
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666644433
No 265
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.89 E-value=59 Score=24.97 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.|.--...||.+|....+-...|+.++.-+...+.+|.
T Consensus 19 I~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 19 IFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3334444455566666665556666666655555555543
No 266
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=58.74 E-value=14 Score=34.40 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++++|+++..|+....++.+..+.....+..++.....|..
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333333333333333
No 267
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=58.69 E-value=7.6 Score=40.07 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+..+|++++..++.+......+|....+....|..+.....++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e 378 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA 378 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3567777888888777777766666555555555444444433
No 268
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=58.61 E-value=22 Score=23.72 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|..|..+|++-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 455555666666666666666666544
No 269
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.55 E-value=40 Score=34.71 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
++.+|++++++++|..+-.+-+.++++.
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er 343 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQER 343 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777666655555555544
No 270
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=58.37 E-value=74 Score=25.89 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.|...=..+|..|+..+..+..++..|..+|..+.
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444455555555555555555555443
No 271
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=58.36 E-value=18 Score=27.79 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+++..+++.|+.|-.-.-.+|..+..-|+..+.++..|..+|..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555555555555555555555555555555444444443
No 272
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=58.08 E-value=30 Score=27.91 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
-+.|+-++|..++...- --.+|..|..++.+|..|-..+..+|.+|-|++..+
T Consensus 33 vikEIs~Kv~~Iqn~~L-~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~ 85 (92)
T 1x4t_A 33 IIGEISKKVAQIQNAGL-GEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK 85 (92)
T ss_dssp HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTT
T ss_pred HHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 34455555555544211 123677888888999999999999999999998755
No 273
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.89 E-value=73 Score=26.31 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=2.7
Q ss_pred HHHHHHHH
Q 018676 259 LKRQKRKQ 266 (352)
Q Consensus 259 ~KR~RRk~ 266 (352)
+...||.+
T Consensus 40 i~elrr~i 47 (131)
T 3tnu_A 40 ISELRRTM 47 (131)
T ss_dssp -CHHHHHH
T ss_pred HHHHHHHH
Confidence 33344433
No 274
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.89 E-value=25 Score=27.42 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+.....|..++..|..++..+..+...|+..|.+
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555543
No 275
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=57.59 E-value=12 Score=31.63 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
++|..+|+.|..|+..|+++++.|+.++...
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777666666666666655443
No 276
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=57.55 E-value=19 Score=25.88 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
+..|+.|..|+.+...|..++..-+.++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~ 35 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKY 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344445444444444444443333333
No 277
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=57.18 E-value=55 Score=25.14 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|..++..-+.|...|..-+..|+.++.....=|..|..++.-++
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555555555555555555554443
No 278
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=56.90 E-value=57 Score=30.30 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++..++.+++.++.+...++.+|..
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444333
No 279
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=56.53 E-value=95 Score=28.30 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 295 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~ 295 (352)
++...+.-+-+..|+-|-+..+++++.++.|..++...-.
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~ 138 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAG 138 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788899999999999999888888776664433
No 280
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=56.39 E-value=13 Score=24.08 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018676 306 RLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|..+..+.+.||-+|..++.+|
T Consensus 5 qlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444555555555544444
No 281
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=56.07 E-value=49 Score=28.06 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
.+|+...+.|+.++..++.+...|
T Consensus 60 ~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 60 QALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 282
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.95 E-value=81 Score=25.63 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 269 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 269 RESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+++..+. ..+...++.|.+++..-..|...|+..++.+......|...+..|..+...|..
T Consensus 43 ~~~~~k~-~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 43 DQGQRKT-QEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333 345566778888888877788888888888888888888888877777776653
No 283
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.08 E-value=25 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Q 018676 298 RNLRDELQRLSEEC-------EKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 298 ~~Lr~el~~L~~e~-------~~L~~EN~~Lk~~L~~l~ 329 (352)
..|+.++..|++.+ ..|+.-.+.|+.+|++|+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444 444444444444444443
No 284
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=55.00 E-value=9.1 Score=32.49 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|..+++.|.+++..|+.|+.+|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666665554
No 285
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=54.99 E-value=1.1e+02 Score=27.02 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=6.1
Q ss_pred HHHHHHHhHHHHHH
Q 018676 261 RQKRKQSNRESARR 274 (352)
Q Consensus 261 R~RRk~~NRESARr 274 (352)
+++-+++.++++|.
T Consensus 34 ~ek~~l~~~e~~r~ 47 (169)
T 3k29_A 34 LEQEKLRERESERD 47 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 286
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.96 E-value=25 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+|-++++.+..|...-+++|..|+.....|+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 287
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.83 E-value=27 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|.+++.++-++++..+.+...|+.+++.|.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777666664
No 288
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.69 E-value=76 Score=24.91 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...|..+++.+..++..|..+...|..++.++.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666667777777777777777777777665
No 289
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=54.64 E-value=6.8 Score=32.62 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 304 LQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.|..++.+|+.||..||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777788899999999999875
No 290
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=54.59 E-value=27 Score=23.31 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..+++.|-.+...|..|..+|++-|.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555666666666667777777666553
No 291
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=54.58 E-value=35 Score=26.36 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
|..++..|++.+..-...-+.|-.+|-.|.-|+.-|......|+
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 33444555544444444444444555444444444444444443
No 292
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.50 E-value=1.4e+02 Score=30.28 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHHHH
Q 018676 258 ELKRQKRKQSNRESA 272 (352)
Q Consensus 258 E~KR~RRk~~NRESA 272 (352)
+++..-..+.|+.+.
T Consensus 104 eLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 104 DLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhH
Confidence 333444444554443
No 293
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.48 E-value=33 Score=34.21 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+..++.+++..|+........+|..|+..+..+......|+.+|..|..
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344555556666655556667777777777777777777777776653
No 294
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=53.23 E-value=24 Score=31.72 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018676 289 RVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++..|+++|..|++|.++|.+
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 295
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=53.01 E-value=60 Score=23.22 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+-.+.|..+|..|+..|..+.+|+.+|+.
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33466777888888888777777777643
No 296
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=52.77 E-value=44 Score=27.24 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.|+++++.|+.....|...+..++.++..+..+.+++..
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666666666666666555555543
No 297
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=52.74 E-value=63 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.|..+|..|++||..|.+-++.=+.....|+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665554444333333
No 298
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=52.51 E-value=81 Score=29.41 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018676 280 QAECEELQARVETLSNENR----NLRDE-LQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~----~Lr~e-l~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
..++++++.++..|..-.. .++++ +...++.+..|+.|+..-+.+|...+-....+
T Consensus 37 MkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~qRV~a 97 (239)
T 3k66_A 37 MKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQA 97 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4556777777777766442 23333 34456666677777777777776665443333
No 299
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=51.89 E-value=65 Score=23.33 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+..+..|+.++..++.+......+...|-.-...|..|...-+.-|.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45678888999999999888888888888888889888888776654
No 300
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=51.64 E-value=21 Score=22.82 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 018676 314 LTSENNSIKEDL 325 (352)
Q Consensus 314 L~~EN~~Lk~~L 325 (352)
|++....|..+|
T Consensus 13 lesklqalekkl 24 (31)
T 3ljm_A 13 LESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 301
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.40 E-value=8 Score=28.23 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr 301 (352)
..++++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788887777776665543
No 302
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.29 E-value=55 Score=29.67 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
++++..|+.+|..|..++..|..+++
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 303
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=51.06 E-value=1.2e+02 Score=26.26 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+++|..|+.++..|-.+|..-+.++..+..+...
T Consensus 97 ERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 97 ERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333
No 304
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=50.80 E-value=1e+02 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|+..+.+|...|..|.++.-.|+.....-.-+|.+|
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL 82 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTL 82 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Confidence 45666666677766666666555554443333333333
No 305
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=50.66 E-value=1.7e+02 Score=27.66 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 269 RESARRSRLRKQAECEELQAR-------------------VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 269 RESARrSR~RKq~~~eeLe~k-------------------v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
=.++++++.+=...++++++- ++.-...-++|+.+++.....+.....+-..++.+|....
T Consensus 132 e~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk 211 (279)
T 3qwe_A 132 VQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAK 211 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888888888741 1112223344777888888888888888888888887754
Q ss_pred Ccchhhchh
Q 018676 330 GPEAVANLE 338 (352)
Q Consensus 330 g~~~~~~L~ 338 (352)
+..|+.|.
T Consensus 212 -~~~v~~Lr 219 (279)
T 3qwe_A 212 -QRIVSHVR 219 (279)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 55555443
No 306
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.54 E-value=46 Score=25.75 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRN------LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~------Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.|+.++..|+.+... =..++..|..++..+..+...+.++=..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888877643 12456666666666766666666554443
No 307
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=50.47 E-value=29 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.++++.|+++.+.|+.|.++|..++..+.....+
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~ 217 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAE 217 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4678888888888888888888887777765433
No 308
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=50.39 E-value=1e+02 Score=25.06 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Q 018676 308 SEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 308 ~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
+.+++.|+.|...|..+|.+..-.
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777776533
No 309
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.33 E-value=13 Score=28.30 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018676 304 LQRLSEECEKLTSENNSI 321 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~L 321 (352)
|..|+++...|..++..|
T Consensus 59 I~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 310
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=50.30 E-value=40 Score=29.51 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQAR 289 (352)
Q Consensus 277 ~RKq~~~eeLe~k 289 (352)
++|++++.+|..+
T Consensus 22 ~~K~~~LqeL~~Q 34 (155)
T 2aze_A 22 KQKQSQLQELILQ 34 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 311
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=49.99 E-value=1e+02 Score=31.44 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++.++||+++.-|+.....--..|..|+.-++.++.+..+|..-|
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766544433556666666665555555555433
No 312
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=49.48 E-value=71 Score=25.64 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKL----TSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L----~~EN~~Lk~~L~~l~ 329 (352)
++.+.++..--+|...+|..|-.|.....++ +.|..+||.+|...-
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555555555566666666666554444 467888888887653
No 313
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.25 E-value=48 Score=33.94 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+.+++.+-..+++||+.++++....+..++
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye 65 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYE 65 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666665555544433
No 314
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=49.20 E-value=35 Score=28.67 Aligned_cols=37 Identities=11% Similarity=0.301 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
|+++++.|+.....|...+..++.++..++....+|.
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 315
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.08 E-value=45 Score=33.91 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018676 311 CEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
...|..+...|.+++.++. +.+..+...++.
T Consensus 113 ~~~l~~~i~~le~~~~~~~--~~~~~~l~~iPN 143 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLE--EERDKLMLNVGN 143 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 5555556666666666554 445455555444
No 316
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.00 E-value=36 Score=31.06 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+++++|..++.+|.++...+|++..+=
T Consensus 73 ~e~~el~d~~lR~~AEfeN~RkR~~rE 99 (213)
T 4ani_A 73 AKLSEMEHRYLRLYADFENFRRRTRQE 99 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 317
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=48.79 E-value=50 Score=21.75 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.++..|+++...|.-....|++++..|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666667777777777777777776655
No 318
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=48.73 E-value=74 Score=29.55 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=10.0
Q ss_pred HHHHhHHHH-HHHHHHHHH
Q 018676 264 RKQSNRESA-RRSRLRKQA 281 (352)
Q Consensus 264 Rk~~NRESA-RrSR~RKq~ 281 (352)
+-++|||.. +.+|.||+.
T Consensus 97 K~IR~~E~svqp~R~~R~~ 115 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEK 115 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 346677654 555555543
No 319
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=48.44 E-value=64 Score=23.05 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+.+.-+.....|.++|..|..++..-+.++..+.++|
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 320
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=48.42 E-value=39 Score=26.71 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.++..|+++..++ ..|+..|..|..+|++|+
T Consensus 44 Lq~e~~r~~e~e~r~----k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 44 LQREQQRAKDLENRQ----KKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHH
Confidence 344444444443333 667888888888887775
No 321
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=48.22 E-value=72 Score=25.76 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.++|+.-+..|+.+|..-...|..|+..++.
T Consensus 27 k~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 27 KDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777777666666666555443
No 322
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=48.08 E-value=60 Score=26.28 Aligned_cols=41 Identities=17% Similarity=0.393 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+|+.+++.|+.+...| +.++.+...|+..-..|..+|..+
T Consensus 50 ~eL~~EI~~L~~eI~~L----E~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQL----EKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555555555432 233333344555545555555444
No 323
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=47.98 E-value=21 Score=34.48 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
|+.+++.|++++..|+.....|...|
T Consensus 33 Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555544444444
No 324
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=47.81 E-value=16 Score=29.72 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCCC
Q 018676 305 QRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 343 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~~ 343 (352)
..|+.++..|+.|...|+++|..|.. +..+.++...++.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILED 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecC
Confidence 33444445555555555666666554 4455555555543
No 325
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=47.70 E-value=38 Score=31.88 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
++++..+..+..+...|..++..|+.++..|+.+
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444444444444444444333
No 326
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.65 E-value=34 Score=28.79 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+++..|+.||.....++...-++.+.|
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~l 118 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444433333333
No 327
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.46 E-value=1.4e+02 Score=25.79 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 018676 310 ECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
.++.|..||..++++|...+.+
T Consensus 141 SFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 141 SFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhhhhHhHHHHHHHHHHh
Confidence 4678899999999999887643
No 328
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=47.42 E-value=69 Score=25.39 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.|+.++..|+.+...|.+++..+..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677666666666666666643
No 329
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=47.39 E-value=33 Score=23.21 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+.|...++....|+..|+.+...|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444444444444444444444443
No 330
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=47.22 E-value=52 Score=26.98 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|++.+..|-+....|-.+-=.|......-.-|...|+.++.+|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34444444444444444444444444455555666666666666
No 331
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.22 E-value=38 Score=29.25 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
+++..|+.||.....++...-++.+.|..+
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555554444444444333
No 332
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=47.12 E-value=39 Score=31.37 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++.|-.+|+.++.....|..+++.+.+..+..+.....|.+.|.+|..
T Consensus 1 le~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 1 MASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777777777777777753
No 333
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.99 E-value=88 Score=25.11 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 018676 311 CEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..+......|+.+|.++.
T Consensus 64 L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 64 IAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 334
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.99 E-value=42 Score=28.76 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 018676 309 EECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 309 ~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+...++..|..|+++|.+-.
T Consensus 96 ~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666554
No 335
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=46.97 E-value=46 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
.||.+-+++| ..|+.+...|+.++
T Consensus 6 rrr~e~ld~l----~~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEM----LDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444444443 45666777776665
No 336
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.93 E-value=72 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|+++++.|+++...|...+..|...+...
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333
No 337
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=46.91 E-value=1.2e+02 Score=27.74 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++...+.++..++.+...++.+|..+
T Consensus 122 ~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 122 EMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 338
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=46.54 E-value=59 Score=31.51 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLR 301 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr 301 (352)
+++++|+++++.|+.+...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666664
No 339
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=46.40 E-value=93 Score=24.49 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhc
Q 018676 306 RLSEECEKLTSENNS-IKEDLSRLC 329 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~-Lk~~L~~l~ 329 (352)
.+..++...+.+... |+.+|++|.
T Consensus 69 ~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 69 TYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555556666666 666666654
No 340
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.31 E-value=1.1e+02 Score=24.10 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 279 KQAECEELQARVETLSN-------------------ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~-------------------EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-+.+++.|+..+..|+. .......++..++.++..|..+...|..++..+.
T Consensus 29 l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666643 2344556666677777777777777776666665
No 341
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.27 E-value=22 Score=35.34 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhchhhcCC
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNP 342 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~-~~~~~L~~~~~ 342 (352)
+.+++++.++..+.+... .|+.+...|..+...|++++..|+.. ..+..+...++
T Consensus 25 ~~i~~~~~~~~~~~~~~~-------~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~ 80 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVR-------RLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVS 80 (405)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence 344455555544444333 34444445555556666666666543 33444444443
No 342
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=45.88 E-value=92 Score=23.30 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 293 LSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|..|...|+++|..|+.|+..|
T Consensus 39 ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 39 LSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhh
Confidence 3333344444444444444333
No 343
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=45.54 E-value=37 Score=21.69 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
.+.|+.+...|+...+.|.++++.|
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443
No 344
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.43 E-value=21 Score=35.60 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..++.++..|+.+...++++|+.|+
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 73 QLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333344444444445555555554
No 345
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=45.27 E-value=58 Score=30.83 Aligned_cols=53 Identities=11% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
....--..++.+|..+|..++.+..++.+.++++...+..|+.|..+++..|+
T Consensus 209 ~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 209 EANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344566778888888888888888888888888888888888887775443
No 346
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=45.05 E-value=32 Score=27.74 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 018676 284 EELQARVE-TLSNENRNLRDELQRLSE--ECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~-~Le~EN~~Lr~el~~L~~--e~~~L~~EN~~Lk~~L~~l 328 (352)
.+|+.+|+ .|...+..|.+++..|.. ..++|..+-..|...+..+
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~ 83 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSL 83 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 45666666 666666666666653333 3444444444444444443
No 347
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=44.83 E-value=4.6 Score=32.78 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..+..|.-.|+++|..|..+++.++.||..|++-
T Consensus 39 ~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 39 KKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp ----------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777754
No 348
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=44.46 E-value=72 Score=29.94 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
+.+|+.+++.|+.+...+..++..+..+
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 349
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=44.36 E-value=68 Score=25.85 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018676 306 RLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.|++++..|..|...|...|.
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~ 73 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQ 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 350
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.30 E-value=1.3e+02 Score=24.57 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018676 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
...+..++..|++....+..-...|..+|..|. +.|..|+
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~--eEl~FLK 103 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQ--EEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 333444444444444444444444555555554 3444443
No 351
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=43.33 E-value=37 Score=29.42 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+..||+++..|+.....+..+|..|+.+++.|+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666666666666655555553
No 352
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=43.23 E-value=21 Score=29.03 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018676 291 ETLSNENRNLRDELQRL 307 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L 307 (352)
.+|+.+...|++++..|
T Consensus 10 ~~l~~~~~~l~~~i~~l 26 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHL 26 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 353
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=43.19 E-value=40 Score=27.41 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+.+++.|+.+-..|-..+..+++.+..|.
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333333
No 354
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=43.06 E-value=1.1e+02 Score=24.36 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 280 QAECEELQARVETLSNENRNLRDEL--------QRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el--------~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.|.+.+..++..+.-..+|.-|+ ..+..++...+.+...|+.+++.+.
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555444444444443 2344455555566666666666554
No 355
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=42.97 E-value=81 Score=27.88 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.|+..+.....+|..|-.++..|+-++..|...-.....+|..
T Consensus 113 ~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~ 156 (170)
T 3l4q_C 113 TKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQ 156 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666666666666665555544
No 356
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.87 E-value=39 Score=33.53 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
.+.+..|+.+...|..++..+++++
T Consensus 38 ~~~~~~l~~~~~~l~~~~~~~~~e~ 62 (405)
T 4b4t_J 38 TENVRRLEAQRNALNDKVRFIKDEL 62 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444433
No 357
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=42.76 E-value=41 Score=26.28 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCcchhhchhhcC
Q 018676 320 SIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 320 ~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.|.-+|++++..+....+..++
T Consensus 44 sLQvqLE~IRqadt~~qvr~Il 65 (79)
T 1tu3_F 44 TLQVQLERIRQADSLERIRAIL 65 (79)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 4555566665555544444443
No 358
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.74 E-value=1.8e+02 Score=30.00 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 018676 319 NSIKEDLSRL 328 (352)
Q Consensus 319 ~~Lk~~L~~l 328 (352)
..|..+|.+|
T Consensus 570 ~~~~~ei~~l 579 (592)
T 1f5n_A 570 RIMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 359
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.42 E-value=9.5 Score=27.35 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.||..|..-+.+|......|+.....|...|
T Consensus 17 kenaklenivarlendnanlekdianlekdi 47 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDI 47 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4666665555554444444444444443333
No 360
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=42.34 E-value=1.5e+02 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.+.|+.....|..++..|+.....|..
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333333
No 361
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=42.02 E-value=1.7e+02 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 018676 302 DELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 334 (352)
Q Consensus 302 ~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~ 334 (352)
..+..+..++..|+.++..|..++.+|.....|
T Consensus 80 ~akk~~ea~la~l~~~~~~LeAE~aKLeEekQI 112 (146)
T 2xnx_M 80 NLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQI 112 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444445555555555566666666544333
No 362
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=41.92 E-value=1.5e+02 Score=24.69 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 275 SRLRKQAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
--.+|++-..+++++++.++.+-..|.++++
T Consensus 55 HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 55 FEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666677777776666665555443
No 363
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=41.64 E-value=67 Score=28.11 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 293 LSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
|+.|...++.+|+.-++++++|..+...+
T Consensus 10 Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 10 LEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334333333333
No 364
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=41.44 E-value=92 Score=26.81 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 018676 281 AECEELQARVET 292 (352)
Q Consensus 281 ~~~eeLe~kv~~ 292 (352)
+|+..|+.+++.
T Consensus 86 eYn~rL~~E~~d 97 (152)
T 4fla_A 86 EYNGRLAAELED 97 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 365
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.20 E-value=1e+02 Score=27.20 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018676 296 ENRNLRDELQRLSEECE 312 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~ 312 (352)
....|.+|+..|+.+..
T Consensus 114 kI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 114 KINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 366
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=40.86 E-value=67 Score=27.36 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcC
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLT-------SENNSIKEDLSRLCG 330 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~-------~EN~~Lk~~L~~l~g 330 (352)
+.|+..+.+|...|..|.++.-.|+ -|...|+.++.++.|
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 4455555566666655555544443 456666666666665
No 367
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=40.82 E-value=1.1e+02 Score=22.60 Aligned_cols=43 Identities=33% Similarity=0.291 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 258 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 258 E~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
|+||-|-+..-|.+-.++|.-=|.+.+-...+. .||..|+--+
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks----~en~rlr~l~ 45 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKS----SENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccchHHHHHH
Confidence 678888888899999999988888888777654 4666665443
No 368
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=40.46 E-value=49 Score=29.34 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
......|+.+...|.++...|..++..|+.
T Consensus 55 ~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 55 AIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444
No 369
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=40.42 E-value=1e+02 Score=22.29 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
..|+.++..++.....|..++..+.-+.+.+..+
T Consensus 8 ~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q 41 (66)
T 3m0a_A 8 ESLEKKTATFENIVCVLNREVERVAMTAEACSRQ 41 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3344444444443333444444443333333333
No 370
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.12 E-value=29 Score=34.65 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 295 NENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.+...++.++..|+++...++.|+..|+
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 72 DQLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444455555555555655554
No 371
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=40.01 E-value=44 Score=28.15 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=5.2
Q ss_pred HHHHHHHhHHHH
Q 018676 261 RQKRKQSNRESA 272 (352)
Q Consensus 261 R~RRk~~NRESA 272 (352)
.+-.++.||.=+
T Consensus 10 ~Eiq~L~drLD~ 21 (123)
T 2lf0_A 10 NEIKRLSDRLDA 21 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444554433
No 372
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=39.84 E-value=53 Score=21.90 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.-..|..+.+.|+..+..|+.+|..+
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444455555555555555543
No 373
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=39.65 E-value=67 Score=29.81 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+..+.+...++.++..++.++..++.+...++.+|..
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445555566666666666666666666665544
No 374
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=39.01 E-value=76 Score=24.76 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCcchhhchhhc
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK-----EDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk-----~~L~~l~g~~~~~~L~~~ 340 (352)
.+.+|..++..|+.|...-..=-..+-+-++.|..+..+|+ ++++.+-+...++++.+.
T Consensus 13 ~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~ 76 (79)
T 1tu3_F 13 LMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQL 76 (79)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHccCccchHhhC
Confidence 34455555555555443322211222222345556666665 467777777767666554
No 375
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.95 E-value=89 Score=32.59 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+..+..|+.+...++.+++.++.+..+|+.....++++|.+
T Consensus 351 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp HHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 376
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=38.46 E-value=2e+02 Score=24.95 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|+..+...+.....++.+...|++++..|.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~Le 100 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLT 100 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 33444444444444445555555555544444
No 377
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=38.42 E-value=20 Score=30.60 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=3.9
Q ss_pred CCCCCCcc
Q 018676 198 SVPGKPVV 205 (352)
Q Consensus 198 s~~g~~~~ 205 (352)
.+.|.+|.
T Consensus 33 ~v~GrpV~ 40 (140)
T 3iyn_Q 33 SIDGRPVL 40 (140)
T ss_dssp CTTCSSCC
T ss_pred CCCCCccC
Confidence 34555553
No 378
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.15 E-value=51 Score=22.47 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018676 295 NENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L 314 (352)
.+...|..++..|+++..+|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 379
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=38.11 E-value=83 Score=27.87 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.|.++-+.|...-..|+..+..|.++...|..+...|++
T Consensus 46 sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 46 SIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666777777777777777777777777
No 380
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=38.07 E-value=35 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018676 307 LSEECEKLTSENNSIKED 324 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~ 324 (352)
|++++..|..|...|+.+
T Consensus 61 L~Rk~DKl~~ele~l~~~ 78 (94)
T 3vlc_E 61 NNRKLDSLDKEINNLKDE 78 (94)
T ss_dssp HHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 381
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=37.76 E-value=13 Score=26.34 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|+.+.+..+.++.++..|+.++.
T Consensus 7 ELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 7 ELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444445555555555443
No 382
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.25 E-value=54 Score=29.49 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
...+.+|+++...|+.||+.|.++-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777777777777777654
No 383
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=37.09 E-value=2.4e+02 Score=29.04 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
++-|-|-|---|+|+ ++.+...++..++.....|+..+..+..+
T Consensus 342 ki~naevae~~~lrQ--RlddArNEItsaeSaInslqaqvSa~t~e 385 (602)
T 1cii_A 342 KIYNAEVAEWDKLRQ--RLLDARNKITSAESAVNSARNNLSARTNE 385 (602)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555545552 24444444444444444444444433333
No 384
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=36.96 E-value=22 Score=28.91 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
..|+..|++|.+++..++ ..+..|+.++...+.....-++.-.+|..
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~ 83 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAE 83 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666666666666665 44455666666666665555544444433
No 385
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=36.69 E-value=64 Score=25.33 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++.+|...++.|+.|-.-.-.+|..+.--|+....++..|..+|..
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ 54 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIG 54 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34566666666666666666666666655555554444444444444
No 386
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.63 E-value=87 Score=26.20 Aligned_cols=33 Identities=6% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+.|+.+++.|+.....|+.++..+...+.+|..
T Consensus 108 ~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 108 KEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666665543
No 387
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=36.05 E-value=1.2e+02 Score=26.89 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
.+.+.+++.||.++...+.++..+..+|.
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 388
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=35.78 E-value=10 Score=25.51 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~ 305 (352)
.|..++..|+.++..+..++.
T Consensus 8 avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333
No 389
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=35.67 E-value=69 Score=26.65 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
+++.+|+.+|+.++..+..|++-..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~ 28 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQ 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555443
No 390
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=35.11 E-value=18 Score=35.84 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018676 308 SEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 308 ~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
..+...|..+...|.+++.++. +.+..+...++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 107 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVE--EELKNTLLWIPN 107 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3444445555555555555554 444444444444
No 391
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=35.01 E-value=1.3e+02 Score=24.43 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
..++-.+|..++..-+.+...-+..+..|++.+..|+.|
T Consensus 55 ~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqE 93 (98)
T 4fm3_A 55 LLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666665555555554
No 392
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.77 E-value=89 Score=24.08 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhcCcc
Q 018676 313 KLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 313 ~L~~EN~~Lk~~L~~l~g~~ 332 (352)
.-..++..|+.+|..+.+.+
T Consensus 44 ~aV~~Ll~LKa~l~~~tg~~ 63 (79)
T 2djv_A 44 AEVAKLLDLKKQLAVAEGKP 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 34445567777777776644
No 393
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=34.47 E-value=86 Score=23.77 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEELQARVET 292 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~ 292 (352)
|+.+|+....++.|+-|.|=...+++|..-|-.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~ 37 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPT 37 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccc
Confidence 356666667777777777777777777766554
No 394
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=34.45 E-value=1.5e+02 Score=25.14 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++.|.+|-.++..|+.|--.|..++..-..++..|......|+...
T Consensus 64 ~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 5677888888888999888888888888888899988888886543
No 395
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.40 E-value=1.9e+02 Score=23.74 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018676 297 NRNLRDELQRLSEECEK 313 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~ 313 (352)
...|+.+|..|++.+..
T Consensus 84 Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 84 VSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 396
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.35 E-value=24 Score=35.18 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
|+.++..|+.|+..|..++..|++++..++.+...++
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555555555555555555544433
No 397
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=34.19 E-value=40 Score=31.35 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
...-|++.+.+.++.-+..+.-+..-|++++.+|++++..|+.+...|.
T Consensus 263 y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (321)
T 3p7i_A 263 LVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALS 311 (321)
T ss_dssp GHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444455566666666666666665554443
No 398
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.93 E-value=76 Score=24.06 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 018676 316 SENNSIKEDLSRL 328 (352)
Q Consensus 316 ~EN~~Lk~~L~~l 328 (352)
.|+.+|+.+|.++
T Consensus 39 ~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 39 EEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 399
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=33.85 E-value=44 Score=25.50 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+|..+|..|+....... ++..|+.+...|+.|...|......
T Consensus 27 ~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555555554433233 6666766666666666666555443
No 400
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.71 E-value=1.2e+02 Score=20.95 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLR 301 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr 301 (352)
.-++.|+..|.+|+
T Consensus 10 nyiqeleernaelk 23 (46)
T 3he4_B 10 NYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 33333444444433
No 401
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=33.65 E-value=2.9e+02 Score=25.56 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 276 RLRKQAECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
+.+.+....++..+|...-.+...++.++..
T Consensus 346 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~ 376 (446)
T 3pik_A 346 VVNYEQKIQNAFKEVADALALRQSLNDQISA 376 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555544444444444443
No 402
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.57 E-value=1.2e+02 Score=21.27 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 283 CEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el 304 (352)
++.|+..++.|+..-..|..+.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~ 28 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEY 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 403
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=33.44 E-value=47 Score=26.81 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRN 299 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~ 299 (352)
..|+.++..|+.+...
T Consensus 7 ~~l~~~~~~l~~~l~~ 22 (149)
T 1rtm_1 7 ANMEAEINTLKSKLEL 22 (149)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 404
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.10 E-value=1.7e+02 Score=22.67 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++.+...|++-+..+.-....|+.+...|+++|.=|
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677766666666667777777777776544
No 405
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.07 E-value=1.6e+02 Score=31.05 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNEN 297 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN 297 (352)
-..+++|++++..|+.|.
T Consensus 400 p~~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 455666666666555543
No 406
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=32.97 E-value=8.1 Score=29.45 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.|+.++..|+=..+.|+..|.+|+.+|.
T Consensus 52 alkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 52 ALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp TTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 3777888888888888888888887764
No 407
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=32.50 E-value=1.6e+02 Score=22.05 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.-|=.|..|..+|+++...++.-++.-...+.+|..-|.++
T Consensus 7 DtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 7 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555544444
No 408
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=32.34 E-value=2.1e+02 Score=25.52 Aligned_cols=54 Identities=13% Similarity=-0.023 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018676 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
..=|+.+.+.|..|-..|..++..++++...+..+-...-.......|.+.+..
T Consensus 33 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~ 86 (217)
T 3aon_A 33 HKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE 86 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 345677777777777777777777777777777776666666666666544443
No 409
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=32.03 E-value=2.8e+02 Score=24.80 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=37.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018676 259 LKRQKRKQSNRESARRSRLRKQAEC-EELQARVETLSNENRNLRDEL---QRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~-eeLe~kv~~Le~EN~~Lr~el---~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
+-+.--++.|+.+...-|..|-.++ +....-+..-+.-+..|...+ ......++.|+....++..+|..|...
T Consensus 70 lTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~ 146 (201)
T 3u0c_A 70 LTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPE 146 (201)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344445666666666666665555 112222333333333333333 334455666666777777777666543
No 410
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.98 E-value=2e+02 Score=23.15 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+.-|+.+++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555566555555444444444445555555555555554444443
No 411
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=31.88 E-value=1.9e+02 Score=25.82 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 300 LRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.++++-++++ -|+.+.+.|+++|.
T Consensus 224 v~~~~~k~Qrey-~LrEQlk~IqkELG 249 (252)
T 3ljc_A 224 VKKQMEKSQREY-YLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 555555555554 36666666776665
No 412
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.82 E-value=25 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018676 279 KQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
+..+++.|+.+|..|+.....|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888887776655543
No 413
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.71 E-value=1.7e+02 Score=22.36 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|-.+-+++-..-.+...++.+|..|.
T Consensus 39 ~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 39 RIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666666666654
No 414
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=31.50 E-value=1.1e+02 Score=27.44 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcC
Q 018676 291 ETLSNENRNLRDELQRLSEECEKL-------TSENNSIKEDLSRLCG 330 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L-------~~EN~~Lk~~L~~l~g 330 (352)
+.|+..+.+|...|..|.++.-.| .-|...|+.++.+|.|
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 344445555555555544443333 2345555566666654
No 415
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=31.09 E-value=78 Score=34.21 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=18.4
Q ss_pred CchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCcccc
Q 018676 29 ADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWG 64 (352)
Q Consensus 29 pdW~~~mQAYy~~~~~pp~y~~s~va~~~phPYmWg 64 (352)
.||.=|=|-|.| ++.|-||... ..+.|+|-
T Consensus 398 ~DW~ISRqr~WG--~pIP~w~~~~----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWG--HQIPAWYCED----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSS--CCCCCEEETT----TCCEECCC
T ss_pred cceeEecccCCC--cccCceecCC----CCEEEEec
Confidence 688755598887 3456676641 12456764
No 416
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=30.62 E-value=1.4e+02 Score=29.13 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018676 306 RLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|.+++.....++..|..++..|
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 223 RLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333444444444443
No 417
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=30.53 E-value=1.7e+02 Score=21.85 Aligned_cols=41 Identities=15% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.|..+|..|+.++..|++-++.-++....|+.=...+..+.
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~ 51 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46677788888888888777777666666665555554443
No 418
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=30.50 E-value=1.1e+02 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
....+......+..-+..+...|..
T Consensus 56 ~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 56 QFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 419
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=30.46 E-value=1.4e+02 Score=27.13 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018676 276 RLRKQAECEELQARVETLS 294 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le 294 (352)
|.+|+--.+....+++.|+
T Consensus 139 R~~KllDYD~~~~k~~kL~ 157 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQ 157 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 3455555555555555554
No 420
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.45 E-value=2.2e+02 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|.+|..++..|++|--.|..++..- .-|...|+.++.+|
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~kv~kq-------~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQEKFKQQ-------KYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhh-------hHHHHHHHHHHHHh
Confidence 344555555555555555555555444 44445555555544
No 421
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=30.41 E-value=73 Score=24.24 Aligned_cols=48 Identities=6% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++..|..+-..|..++..|........ ++..|+.+--.||.+|..+-
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHH
Confidence 3445555555555555555554443333 66677777777777766653
No 422
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.14 E-value=2e+02 Score=22.54 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
-++.|+.=++.|+.-..+-+.+....+.+...-......+++.|..
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777666666666666666666666654
No 423
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.11 E-value=1.2e+02 Score=24.52 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.++..|+.|...|..+-..|-+.+..+....+.|.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555444444444444444
No 424
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=30.10 E-value=2.3e+02 Score=24.45 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENR 298 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~ 298 (352)
.+|..|+-+...+..|..
T Consensus 43 ~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 43 QQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566655555555444
No 425
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=30.08 E-value=31 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
.||-.+++-|++.+..|+.|...|.
T Consensus 24 ~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 24 AGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888877777766654
No 426
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=29.87 E-value=2.3e+02 Score=23.16 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-+++...++++..-..|-.++..+++.|-.++--|+.|..+|+.-++
T Consensus 61 ~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 61 SARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45667777777777777777777888888888888888888886554
No 427
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=29.81 E-value=31 Score=27.86 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018676 300 LRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~ 320 (352)
|+.+++.|.++++.|..+...
T Consensus 61 L~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 61 NNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 428
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=29.75 E-value=3e+02 Score=28.10 Aligned_cols=18 Identities=0% Similarity=0.112 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHhHHH
Q 018676 254 QDERELKRQKRKQSNRES 271 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRES 271 (352)
.-|+..+..-.+++|+..
T Consensus 58 kqerdv~~rI~kLkn~L~ 75 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLA 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 445556666666666653
No 429
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.55 E-value=1.9e+02 Score=22.17 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...|..+++.+..++..|..+...|..++.++.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666654
No 430
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=29.25 E-value=32 Score=28.31 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSN 295 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~ 295 (352)
+||..|+.+++.|+.
T Consensus 74 eYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 74 DYIRKLQREQQRAKD 88 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 431
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=28.73 E-value=1.1e+02 Score=23.73 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+.++.|+..++.|+..-..|..++...+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777776666665443
No 432
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=28.64 E-value=2.2e+02 Score=25.08 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018676 290 VETLSNENRNLRDELQRL 307 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L 307 (352)
-+..+.-|..|+.+|..|
T Consensus 192 k~~ye~ln~~L~~eLp~l 209 (251)
T 2fic_A 192 QKVFEEMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555555555
No 433
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.43 E-value=2e+02 Score=25.89 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 276 RLRKQAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
+.+|.+-++.|.+++..|+.|-+.|..++.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888777777654
No 434
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=28.29 E-value=1.5e+02 Score=23.31 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|.+++|++-||.+-|....+.- +..|-++.-.=..+|-.+-+++-..-.+...++.+|..+.
T Consensus 16 di~eLkkevkKL~~~A~q~kmd-------------LHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMD-------------LHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH-------------HHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655444433322 2222222222233445555555555566666666666654
No 435
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=28.25 E-value=2.2e+02 Score=25.46 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+.|..++..+..++..|+.++..+-++......
T Consensus 41 d~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~ 73 (217)
T 3aon_A 41 DELMRQFILLIRKNNELRQAIEKETQTAMKDFV 73 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888887776555444333
No 436
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=28.10 E-value=2.5e+02 Score=26.96 Aligned_cols=9 Identities=44% Similarity=0.512 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 018676 285 ELQARVETL 293 (352)
Q Consensus 285 eLe~kv~~L 293 (352)
.|+.+++.+
T Consensus 228 ~L~~ere~~ 236 (302)
T 3ibp_A 228 SLHAEREVL 236 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 437
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=28.07 E-value=2.5e+02 Score=25.36 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
.-+-...++++++...|+.+...|.+++......+..+..--..+.+.|..+..+.
T Consensus 34 ~T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~ 89 (243)
T 4a3a_A 34 ETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPD 89 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 44677888889999999999999999998888888888877778888888887554
No 438
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=27.98 E-value=96 Score=28.38 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++++++.++..|..- .=+.-++..++.+..|+.|+..-+.+|...+
T Consensus 43 kEW~eae~q~k~l~ka--dkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH 89 (211)
T 3umh_A 43 REWEEAERQAKNLPKA--DKKAVIQHFQEKVESLEQEAANERQQLVETH 89 (211)
T ss_dssp HHHHHHHHTTSSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445555544444331 1111233344445555555555555555444
No 439
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=27.91 E-value=2.3e+02 Score=25.41 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
-...++++++...|+.....|.+++......+..+..-...|.+.|..+..+
T Consensus 32 D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~ 83 (237)
T 4avm_A 32 DERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSS 83 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3667778888888888888888888888887777777777777777777654
No 440
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=27.80 E-value=1.4e+02 Score=26.62 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
++.++..+++-++....+=++++.......-+.+|+.
T Consensus 61 ~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLp 97 (197)
T 1dkg_A 61 GILRVKAEMENLRRRTELDIEKAHKFALEKFINELLP 97 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333344444433
No 441
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=27.76 E-value=86 Score=20.86 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 018676 293 LSNENRNLRDEL 304 (352)
Q Consensus 293 Le~EN~~Lr~el 304 (352)
|+..+..|+.+|
T Consensus 19 l~~r~eqL~~kL 30 (34)
T 1a93_A 19 LRKRREQLKHKL 30 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 442
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=27.39 E-value=69 Score=25.79 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
|.++|..|+.+...|+.+|..|+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555543
No 443
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.29 E-value=2.3e+02 Score=22.39 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
..|++.|.+++..++..+.-..+|.-|+..+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555557777777777666666666555443
No 444
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=27.08 E-value=93 Score=29.90 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 018676 297 NRNLRDELQRLS 308 (352)
Q Consensus 297 N~~Lr~el~~L~ 308 (352)
.+.|+.+|..|+
T Consensus 37 le~L~~KI~~LE 48 (323)
T 1lwu_B 37 LEHLRAKMQRME 48 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 445
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=27.08 E-value=72 Score=29.22 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
=|++...|.|+.-+.-+.-+..-|++++.+|++++..|+.....|.
T Consensus 257 ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (310)
T 3n5l_A 257 IRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAERE 302 (310)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443344555566667777777766665555443
No 446
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=26.89 E-value=92 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNL 300 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~L 300 (352)
+.++++++.|..+...|
T Consensus 141 ~~l~~~i~~L~~~l~~l 157 (166)
T 3pjs_K 141 EAYTRTTRALHERFDRL 157 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444333333333
No 447
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=26.64 E-value=1.3e+02 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
++|+++++.|+.....-.+.+..|+.....-..|-.+|
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRL 62 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRV 62 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444444444444444433333333
No 448
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=26.63 E-value=1.9e+02 Score=25.75 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++.|.+|..++..|+.|--.|..++..-.-++..|......|+.
T Consensus 64 ~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 57788888999999999999988888888888888888888854
No 449
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.53 E-value=1.1e+02 Score=30.93 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.-...|+..++.+..+++.|+.....|++.|..-
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~~p 196 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTP 196 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSB
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 445556677777777777777777777777776543
No 450
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.45 E-value=63 Score=27.22 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRD-----ELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~-----el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++++..|..+++.++.....+.. -+..+..|++.|..+..+|+..-
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555565665555554444322 24555556666666666665543
No 451
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.42 E-value=73 Score=28.41 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|+..+..+......++.+|..|++++..|
T Consensus 41 ~~~h~~~~~~~i~~~~~~i~~~~~~l~~l 69 (228)
T 1flk_A 41 LESQLSRHDQMLSVHDIRLADMDLRFQVL 69 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555554444433
No 452
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=26.37 E-value=54 Score=24.16 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 018676 286 LQARVETLSN 295 (352)
Q Consensus 286 Le~kv~~Le~ 295 (352)
|+++|..|+.
T Consensus 7 leekvkalee 16 (67)
T 1lq7_A 7 LEEKVKALEE 16 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 453
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=26.26 E-value=1.4e+02 Score=21.95 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
....+......+..-+..+...|..
T Consensus 57 ~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (99)
T 3zbh_A 57 QYQELRPSFEKMAVLLNEVGQQLHN 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 454
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.20 E-value=2.8e+02 Score=23.05 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++-.+++.-+..-+..-.....++.+...+|..+|..-..+....+ .....+.++..|..+-..++.+|..
T Consensus 19 q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~-~~~~yk~~y~~l~k~Y~~~~keLd~ 89 (119)
T 3etw_A 19 QNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA-NTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHH
No 455
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.89 E-value=93 Score=20.18 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018676 293 LSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|+++...|..-+..|++....|
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 456
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=25.81 E-value=2.1e+02 Score=28.29 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSN------ENRNLRDELQRLS 308 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~------EN~~Lr~el~~L~ 308 (352)
..+++.|+.++..+.. |.+.|..++..|+
T Consensus 206 ~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 206 ARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 240 (517)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3344555555555554 4444444444443
No 457
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.54 E-value=83 Score=20.33 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018676 307 LSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+...+.|+..|-.-+.+++.|
T Consensus 6 lkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3333444455555555544444
No 458
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.29 E-value=2.1e+02 Score=28.55 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++..|+..+......|..|+..+.........|+..+..|..
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555556666656666666666666665543
No 459
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=25.23 E-value=3.6e+02 Score=23.91 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018676 303 ELQRLSEECEKLTSE 317 (352)
Q Consensus 303 el~~L~~e~~~L~~E 317 (352)
++..++..+..+..|
T Consensus 138 ~l~KaK~~Y~~~~~e 152 (305)
T 2efl_A 138 QLESSKRRFERDCKE 152 (305)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 460
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=25.13 E-value=1.8e+02 Score=20.43 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+..-|.+||.+|+.-......+++.+-.++.
T Consensus 8 eF~~L~rRVlqlE~~l~gI~S~idav~~Kl~ 38 (45)
T 4gif_A 8 EFYMLTRRVLQLETVLEGVVSQIDAVGSKLK 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444333
No 461
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.00 E-value=1.7e+02 Score=20.95 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018676 304 LQRLSEECEKLTSENN 319 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~ 319 (352)
+...+..+..|+.||-
T Consensus 23 lrk~kk~iKklEdeNP 38 (50)
T 1a92_A 23 LRKLKKKIKKLEEDNP 38 (50)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhhccCC
Confidence 3333334444444443
No 462
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=24.97 E-value=2.4e+02 Score=24.80 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|..++..|..--..|...+......+..|..+...|+-+|..|
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344444444444444455555555455555555555555555444
No 463
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=24.97 E-value=1.6e+02 Score=22.65 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNE 296 (352)
Q Consensus 282 ~~eeLe~kv~~Le~E 296 (352)
.+++|+..|..|...
T Consensus 33 ~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 33 NLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 344444444444443
No 464
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.95 E-value=1.5e+02 Score=26.28 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 301 RDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 301 r~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+.++..++.+++.++.+...++..|.
T Consensus 104 ~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 104 LADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444443
No 465
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=24.84 E-value=88 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018676 302 DELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 302 ~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
+++..+.++++.|+.+...++.++..+.|...+..|.
T Consensus 15 ~q~~q~~~Ql~~~k~Ql~q~k~qy~sltG~r~~~~~l 51 (213)
T 1r8i_A 15 EQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLL 51 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHh
Confidence 3445555556666666777777777777766555553
No 466
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.80 E-value=2e+02 Score=23.82 Aligned_cols=47 Identities=4% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018676 283 CEELQARVE-------TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~-------~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++++.+-+. .+......|..++..|.+++..|......|...|..+.
T Consensus 76 L~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 76 IQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.65 E-value=1.5e+02 Score=30.10 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.-+.+.|+.+.+.|+++...|+.-|..-.....-+..|...|+++.
T Consensus 415 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y 460 (470)
T 3ilw_A 415 ALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRH 460 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
No 468
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=24.61 E-value=2.4e+02 Score=21.59 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 269 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 269 RESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
|++-|++-.-=+.++++|..=-+.-+.|-.-|..++...+.....|..|
T Consensus 21 reAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 21 RDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
No 469
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.48 E-value=1.2e+02 Score=25.40 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++...+.|+.....|..++..|++....|......+++.+..
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 470
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=24.42 E-value=2.2e+02 Score=25.43 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 276 RLRKQAECEELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|.+|+--.+....+++.|+. +...|.+.-..|...-.....=|..|+++|-.|
T Consensus 134 R~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l 190 (237)
T 4avm_A 134 RGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPIL 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=24.37 E-value=1.1e+02 Score=22.55 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
++|+.-...+......|...+..|+..+..|
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.29 E-value=1.9e+02 Score=24.12 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 293 (352)
Q Consensus 249 ~~~~~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~L 293 (352)
+.....+|...+|.++.+..-+.+.+.|.++-.+-+.|-.+|+.+
T Consensus 81 P~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 81 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=24.21 E-value=1e+02 Score=26.98 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~---el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.++.|+.++..++.+...|.- +...++...++|+.|..++++.+.+
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
No 474
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=24.18 E-value=2.8e+02 Score=23.53 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018676 280 QAECEELQARVETL-SNENRNLRDELQRLS--------EECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 280 q~~~eeLe~kv~~L-e~EN~~Lr~el~~L~--------~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
++=++.|+++++.| ..+-.++..++...+ .++..-+.+...|..+|..|. +.|.+.....+.
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~--~~L~~A~vid~~ 78 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLT--KCMENLKIVDYS 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHH--HHHHHCEECCCC
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHH--HHHhhCeecCCc
No 475
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=24.11 E-value=1.4e+02 Score=30.72 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++++|+.+.+.|+.+...|+.-|..-.....-+..|...|+++.
T Consensus 455 e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~y 498 (514)
T 2inr_A 455 DIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKF 498 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc
No 476
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.64 E-value=1.4e+02 Score=19.62 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..++++...++.|...+++++..+
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaai 28 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAI 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.60 E-value=1.5e+02 Score=21.82 Aligned_cols=36 Identities=6% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+-+-+.|+.|+.+-+.|...-...+.....|..+|.
T Consensus 28 lERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 28 DERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 478
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.60 E-value=2.4e+02 Score=21.30 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.-++.+..++..|+.+...+..++..|+++..=--..++.+...|....+
T Consensus 2 ~~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~ 51 (75)
T 3mtu_A 2 ASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
No 479
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=23.60 E-value=1.1e+02 Score=25.84 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Q 018676 279 KQAECEELQARVETLSNENRNLRDELQRLSEEC-------EKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~-------~~L~~EN~~Lk~~L~~l~ 329 (352)
+...+++|..+|..|+.+...|..++..+.... ..|.......+++|...+
T Consensus 59 eLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtq 116 (125)
T 2pms_C 59 KLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTE 116 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
No 480
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.55 E-value=3.3e+02 Score=22.89 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018676 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+++..++.++..|..++..|..+-.++...+..-...+..|-++|....+
T Consensus 50 ~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td 99 (123)
T 4aj5_K 50 KELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTD 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 481
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=23.51 E-value=17 Score=33.05 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 272 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.+..++.++++.++.+++.+.+.++..+|++++++|+++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 240 AILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 482
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=23.48 E-value=83 Score=24.13 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|..|...|..|..+++.|......+.+++..+
T Consensus 1 ~~~L~k~i~~l~~E~eel~~klk~~~ee~~~~ 32 (71)
T 1s1c_X 1 GSMLTKDIEILRRENEELTEKMKKAEEEYKLE 32 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=23.48 E-value=48 Score=31.72 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+|+...|...++...+++.||-|.|=-.++.+|..-|-.-......| .++..|+.-+.-|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~ 64 (387)
T 4f3l_B 3 YAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKT 64 (387)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHH
No 484
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=23.46 E-value=55 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 272 ARRSRLRKQAECEELQARVETLSNENRNL 300 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le~EN~~L 300 (352)
||+ .||-.+++-|++.+..|+.|...|
T Consensus 39 Ak~--~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 39 AKA--AGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--hcCcHHHHHHHHHHHHHHHHHHHH
No 485
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=23.25 E-value=3.9e+02 Score=23.59 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 254 QDERELKRQKRKQSNRESARRSRLRKQAECEEL----------QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeL----------e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++|-+..+.+-.+.-+...+....||...++.. +.+...|......|..-++.+.+++..+...-..-+.
T Consensus 40 eeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~ 119 (233)
T 4efa_E 40 DQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKP 119 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q ss_pred HHHHh
Q 018676 324 DLSRL 328 (352)
Q Consensus 324 ~L~~l 328 (352)
-|..|
T Consensus 120 lL~~L 124 (233)
T 4efa_E 120 ILQSL 124 (233)
T ss_dssp HHHHH
T ss_pred HHHHH
No 486
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=23.08 E-value=1.5 Score=39.04 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
..+++.|+.+++.|+.+...|+.++.++..+++-++....+=++++.+.....-+.+|...+|
T Consensus 18 ~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlD 80 (177)
T 3a6m_A 18 GQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLD 80 (177)
T ss_dssp HHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=23.03 E-value=2.6e+02 Score=25.17 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+-.+-.|..++...+.=-.-|+.+-+.|..++..+..++..|+.++.+.
T Consensus 8 R~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~ 56 (223)
T 3a5c_G 8 RMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQA 56 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=22.97 E-value=1.8e+02 Score=21.27 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
++|+.-...+......|...+..|...+..|...
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~ 42 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAAN 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 489
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.96 E-value=1.9e+02 Score=25.54 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++..++.+.++ ....+.-=++++++|+++++.|+.....|...+..++...
T Consensus 66 l~~i~~~~~~~--~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 66 LEEMKKAQDLE--MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 490
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.90 E-value=1.2e+02 Score=20.65 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 298 RNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.+.+.+|..|+.+.+.|+.|..+|=-+|
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 491
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=22.67 E-value=1.7e+02 Score=26.63 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|+.-+..|+.....|.+++..|..+-..|+.+|++.
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKka 47 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.52 E-value=1.6e+02 Score=31.45 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.-+.++|+.+.+.|+.+...|+.-|..-......+..|...++++.
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
No 493
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.46 E-value=1.3e+02 Score=20.35 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.+.+..|...-...-.++..|.+++..|+.+...|
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 494
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.43 E-value=1.6e+02 Score=19.17 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018676 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..+++++..++.|...++-+|..+
T Consensus 3 elaaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=22.38 E-value=4.6e+02 Score=24.17 Aligned_cols=67 Identities=3% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
++..+...-+...+..+...+....++..+|...-.+...++.++..+++.....+...+..+.+.+
T Consensus 326 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~ 392 (442)
T 1yc9_A 326 RLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQ 392 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=22.33 E-value=1.7e+02 Score=23.72 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
....+...+..|..++...+.|+++++.|..+...|.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 95 GREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.28 E-value=2e+02 Score=24.59 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=0.0
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018676 249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 293 (352)
Q Consensus 249 ~~~~~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~L 293 (352)
+.....+|...+|.++.+..-+.+.+.|.++-.+-+.|-.+|+.+
T Consensus 81 Pg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 81 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=22.26 E-value=67 Score=21.91 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=0.0
Q ss_pred CCcchhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 018676 248 MPDQWIQDERELKRQKRKQSNRESARRSRLRK 279 (352)
Q Consensus 248 ~~~~~~~DErE~KR~RRk~~NRESARrSR~RK 279 (352)
|++....+.+.++|+||..+=+...--+|+.|
T Consensus 1 msels~~ekaRlrRERR~aKi~~Ggas~RLnk 32 (38)
T 3zs9_C 1 MSELTEAEKRRLLRERRQKKFSNGGASSRLNK 32 (38)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHccChHHHHHH
No 499
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=22.24 E-value=2.1e+02 Score=22.79 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018676 278 RKQAECEELQARVETLSNENRNL------RDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~L------r~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
|...+++.++..++.|.+-...+ ....+.+.+-+..++.--.+|..-|......+.+..|.+-+|
T Consensus 10 k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND 80 (103)
T 1wrd_A 10 KLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVND 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhH
No 500
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=22.18 E-value=2.9e+02 Score=21.70 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 018676 281 AECEELQARVETLSNENRNLRDELQR----------LSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~----------L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+|++++..+..|+.....|...... ++++++.|..+...+...|..
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~ 68 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Done!