Query 018678
Match_columns 352
No_of_seqs 133 out of 223
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2970 Predicted membrane pro 100.0 6E-109 1E-113 786.6 23.1 301 15-349 15-319 (319)
2 PF04080 Per1: Per1-like ; In 100.0 3E-107 7E-112 774.6 24.5 254 78-341 2-267 (267)
3 COG5237 PER1 Predicted membran 100.0 1.5E-89 3.3E-94 641.5 20.3 300 7-345 6-315 (319)
4 PF05875 Ceramidase: Ceramidas 97.6 0.0071 1.5E-07 57.6 17.9 186 128-338 24-236 (262)
5 PF03006 HlyIII: Haemolysin-II 97.4 0.0037 8E-08 56.9 13.7 154 176-331 45-220 (222)
6 PF12036 DUF3522: Protein of u 96.7 0.051 1.1E-06 50.0 13.5 93 179-279 34-138 (186)
7 TIGR01065 hlyIII channel prote 95.9 0.36 7.7E-06 44.7 14.6 150 175-334 39-198 (204)
8 PRK15087 hemolysin; Provisiona 95.4 0.72 1.6E-05 43.4 14.9 149 176-336 55-212 (219)
9 KOG0748 Predicted membrane pro 88.3 28 0.0006 34.3 16.9 154 189-345 98-275 (286)
10 COG1272 Predicted membrane pro 69.3 62 0.0013 31.0 10.8 40 176-215 59-103 (226)
11 PF13965 SID-1_RNA_chan: dsRNA 57.6 60 0.0013 35.1 9.3 31 312-342 528-561 (570)
12 PF10277 Frag1: Frag1/DRAM/Sfk 53.7 1.6E+02 0.0035 26.1 12.6 91 120-217 41-133 (215)
13 PLN03148 Blue copper-like prot 29.1 43 0.00093 30.8 2.4 17 22-38 26-52 (167)
14 PF10709 DUF2511: Protein of u 23.7 31 0.00067 28.5 0.4 13 114-126 5-17 (87)
15 KOG2329 Alkaline ceramidase [L 23.0 3.4E+02 0.0074 27.0 7.4 37 309-345 211-247 (276)
16 KOG4243 Macrophage maturation- 22.6 37 0.00079 33.2 0.7 7 317-323 265-271 (298)
17 PF07695 7TMR-DISM_7TM: 7TM di 21.8 5.2E+02 0.011 22.2 7.9 30 198-228 63-92 (205)
18 PRK10649 hypothetical protein; 20.8 3.1E+02 0.0067 29.6 7.3 88 175-266 14-105 (577)
No 1
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.2e-109 Score=786.59 Aligned_cols=301 Identities=46% Similarity=0.885 Sum_probs=273.2
Q ss_pred hCCCcccCCCCCCCccccccCCCcHHHHHHHHHhhhcCCCCCCccCccccCCCCCCcCCCCCCCcchhhhhccCCCCCCC
Q 018678 15 AMPQCSFSESKPWLGKYFYVNSWFHQFWACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDC 94 (352)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~gd~l~~f~~Cv~~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~lrl~~W~C~sdC 94 (352)
-...||.||++| +|++||++||.++|+++.++ |+.+ +..|++.|++.|||.+||
T Consensus 15 ~~~~aS~GD~~~-------------~y~~Cv~~Ce~~~c~~~~~~-----~~~~--------~~~~l~~r~~~wdc~s~C 68 (319)
T KOG2970|consen 15 VQFEASPGDRKP-------------GYVDCVQGCEANECSNNYID-----PQTN--------MFHPLYTRLWAWDCCSDC 68 (319)
T ss_pred hhhccCCCCCch-------------hHHHHHHHHhhccCCCCcCC-----cccc--------ccchhHHHHHhcCcchhc
Confidence 334556666666 99999999999999986543 2222 234999999999999999
Q ss_pred ccccchhHHHHHHhcCCCCcccccccCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCCccccccchhh
Q 018678 95 RYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPL 174 (352)
Q Consensus 95 ~Y~Cm~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~ 174 (352)
+|+||+.++++|.++|+|++||||||||+||+||||||||+||++||++|++|+.+ +|.+.+++++.+|+ ++
T Consensus 69 ~Y~Cm~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQEp~SviFS~lNl~~h~~g~~~------~r~~~~~~~~~r~~--~l 140 (319)
T KOG2970|consen 69 RYQCMWTTESEFIKRGGPIPQFHGKWPFLRVLGIQEPFSVIFSFLNLITHYKGLVK------FRRPKKPNRPTRYE--RL 140 (319)
T ss_pred CceeeeeehhhHHhcCCccccccCCcchhhhhhccchHHHHHHHHHHHHHHHHHhh------eecccCCCCcchhc--cc
Confidence 99999999999999999999999999999999999999999999999999999644 56667777777777 68
Q ss_pred HHHHHHHHHHHHHhHhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHHhhhcccc
Q 018678 175 WHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDE-AARVMVAAPLLAFVTTHILYLNFY 253 (352)
Q Consensus 175 w~~~~~v~m~aW~wStIFHtRD~~~TEkLDYF~A~a~vl~~l~~~~vR~f~l~~~-~~r~~~~~~~~~~~~~Hi~yL~~~ 253 (352)
|++|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|+++++.. ..|.+++++++++|++||.||+++
T Consensus 141 ~~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~ 220 (319)
T KOG2970|consen 141 WLIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFY 220 (319)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999999999999999999999999999999999999999876 788999999999999999999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHh-hhcCCcchhHHHH--HHHHHHHHHhhhhccCCCccchhhhHHhhhccchhHH
Q 018678 254 KLDYGWNMKVCVVMAVAQLLIWATWAG-ITRHPSRWKLWVV--VFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTY 330 (352)
Q Consensus 254 ~fDY~YNM~~nv~~Gl~~~~lW~~~~~-~~~~~~~~k~~~~--v~~~~~amsLEl~DFpP~~~liDAHALWHl~TIp~~~ 330 (352)
+|||||||++||++|++|+++|..|++ ++++|+.|+++++ +.+..+||+|||+||||+.|++|||||||++|||+++
T Consensus 221 ~fdYgyNm~~~v~~g~iq~vlw~~~~~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DFpPy~~~iDAHALWHlaTIplt~ 300 (319)
T KOG2970|consen 221 NFDYGYNMIVCVAIGVIQLVLWLVWSFKKRNLPSFWRIWPILIVIFFFLAMSLEIFDFPPYAWLIDAHALWHLATIPLTI 300 (319)
T ss_pred ecccccceeeehhhHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHhhcCCchhhhcchHHHHHhhcCccHH
Confidence 999999999999999999999999994 4678999997754 4455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhh
Q 018678 331 IWWSFIRDDAEFQTANMLK 349 (352)
Q Consensus 331 lwY~Fl~~D~~~~~~~~~~ 349 (352)
+||+|+.+|+++.|++++|
T Consensus 301 ~~~~Fv~~d~~~~t~~~l~ 319 (319)
T KOG2970|consen 301 LWYDFVSDDYDFATGVRLK 319 (319)
T ss_pred HHHHHhhchhhhhcceecC
Confidence 9999999999999997765
No 2
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=3.2e-107 Score=774.55 Aligned_cols=254 Identities=48% Similarity=0.878 Sum_probs=234.9
Q ss_pred CcchhhhhccCCCCCCCccccchhHHHHHHhcCCCCcccccccCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHh
Q 018678 78 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYY 157 (352)
Q Consensus 78 ~~pl~lrl~~W~C~sdC~Y~Cm~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~ 157 (352)
++|+++|+++|||+|||||+|||++|++|+++|+|++||||||||+|++||||||||+||++|+++|++|+++++ +
T Consensus 2 ~~Pl~l~l~~W~C~~dC~Y~Cm~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~----~ 77 (267)
T PF04080_consen 2 SLPLYLRLLGWDCESDCDYQCMWIITEERIKNGEPIVQFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFR----R 77 (267)
T ss_pred CCCcchHhcCCCCchhCcCcCcHHHHHHHHHcCCCcccccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHH----H
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998854 3
Q ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHH
Q 018678 158 KLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNV-RDEAARVMVA 236 (352)
Q Consensus 158 ~~~~~~~~~~~y~~~~~w~~~~~v~m~aW~wStIFHtRD~~~TEkLDYF~A~a~vl~~l~~~~vR~f~l-~~~~~r~~~~ 236 (352)
+.+.+.+.+++ |+++++||||||+||||||+||+++|||||||+|+++|++|+|++++|+|++ .++..+.+++
T Consensus 78 ~~~~~~p~~~~------~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~ 151 (267)
T PF04080_consen 78 QVPRNSPMYPY------YIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFT 151 (267)
T ss_pred hccCCCCCcCe------eehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 44443333332 6789999999999999999999999999999999999999999999999999 4556788999
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCcc---------hhHH--HHHHHHHHHHHhhh
Q 018678 237 APLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHPSR---------WKLW--VVVFGGALAMLLEI 305 (352)
Q Consensus 237 ~~~~~~~~~Hi~yL~~~~fDY~YNM~~nv~~Gl~~~~lW~~~~~~~~~~~~---------~k~~--~~v~~~~~amsLEl 305 (352)
++|+++|++||.||++++|||||||++||++|++|+++|+.|++.++++.+ ++++ ++++++.+||+|||
T Consensus 152 ~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl 231 (267)
T PF04080_consen 152 ALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLEL 231 (267)
T ss_pred HHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998755433 7777 78899999999999
Q ss_pred hccCCCccchhhhHHhhhccchhHHHHHHHHHHHHh
Q 018678 306 YDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDAE 341 (352)
Q Consensus 306 ~DFpP~~~liDAHALWHl~TIp~~~lwY~Fl~~D~~ 341 (352)
+||||+++++|||||||++||||+++||+|+++|+|
T Consensus 232 ~DFpP~~~~lDAHALWHl~Tip~~~~wy~Fl~~D~~ 267 (267)
T PF04080_consen 232 FDFPPIFWLLDAHALWHLATIPPTYLWYDFLIDDAE 267 (267)
T ss_pred hccCcccccchHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999986
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.5e-89 Score=641.46 Aligned_cols=300 Identities=30% Similarity=0.458 Sum_probs=258.9
Q ss_pred HHHHHHHhhCCCcccCCCCCCCccccccCCCcHHHHHHHHHhhhc-CCCCCCccCccccCCCCCCcCCCCCCCcchhhhh
Q 018678 7 CFCILVLRAMPQCSFSESKPWLGKYFYVNSWFHQFWACVKQCEET-GCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQW 85 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~f~~Cv~~C~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~lrl 85 (352)
+|..||.--...||.| ||+|||.+|+.+|+++ .|..++ +|. ...||+.++
T Consensus 6 v~t~l~~~~~vt~s~g-------------d~~~~~~~C~~~C~en~rc~~n~--------~dt--------n~~pL~~kl 56 (319)
T COG5237 6 VVTLLVHCFLVTCSPG-------------DNLDEMKYCFGKCFENSRCNLNK--------TDT--------NMFPLVDKL 56 (319)
T ss_pred hHHHHHHHheeecCCC-------------CCcHHHHHHHHHHHHhcccCCCc--------CCc--------ccccHHHHH
Confidence 4556666667777755 7888999999999976 894432 221 356899999
Q ss_pred ccCCCCCCCccccchhHHHHHHhcCCCCcccccccCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCC-
Q 018678 86 KKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQT- 164 (352)
Q Consensus 86 ~~W~C~sdC~Y~Cm~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~- 164 (352)
++|||.|+|+|+|++..++.+.++++|+.||||||||.||+||||++|++||++|+++||.|+.++. ++.+...+
T Consensus 57 f~wDc~s~cgy~C~~~~~~~~~~~n~~~~q~hGkW~F~rVlG~qEfFS~~FS~~Nfi~hy~gfh~m~----r~i~~e~~~ 132 (319)
T COG5237 57 FGWDCDSKCGYMCHLLCLKFTNSGNIKIYQRHGKWGFQRVLGMQEFFSALFSFMNFITHYIGFHRML----RKILRETRL 132 (319)
T ss_pred HcCccccccchHHHHHHHHHhccCCchhhhhcCccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998743 44443333
Q ss_pred ccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHhcccch----hHHHHHHHHHHH
Q 018678 165 KKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRD----EAARVMVAAPLL 240 (352)
Q Consensus 165 ~~~~y~~~~~w~~~~~v~m~aW~wStIFHtRD~~~TEkLDYF~A~a~vl~~l~~~~vR~f~l~~----~~~r~~~~~~~~ 240 (352)
+|.+| +.++++||+||+||+|||+||+++|||+|||+|+++|++|+|.+.+|+.++.. +..|...+++++
T Consensus 133 ~R~~~------l~wv~igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifi 206 (319)
T COG5237 133 GRLYY------LQWVYIGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFI 206 (319)
T ss_pred cceEE------eeHHHHHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHH
Confidence 44344 44579999999999999999999999999999999999999999999998753 445667789999
Q ss_pred HHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCC--cchhHH--HHHHHHHHHHHhhhhccCCCccchh
Q 018678 241 AFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHP--SRWKLW--VVVFGGALAMLLEIYDFPPYYGFLD 316 (352)
Q Consensus 241 ~~~~~Hi~yL~~~~fDY~YNM~~nv~~Gl~~~~lW~~~~~~~~~~--~~~k~~--~~v~~~~~amsLEl~DFpP~~~liD 316 (352)
++|+.||.||++++|||+|||++|+++|++|++||.+.+..+++. ..||-+ .+|+.+.+||||||+||||+-++||
T Consensus 207 a~fa~Hi~rls~i~fdY~YNm~~n~aigv~q~iL~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~slElfDf~pya~lID 286 (319)
T COG5237 207 AFFAYHIHRLSNIEFDYVYNMISNCAIGVTQTILSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGSLELFDFPPYAYLID 286 (319)
T ss_pred HHHHHHHHHHhhccceeeehhhhcchHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhhhhhhccCcHHHHhh
Confidence 999999999999999999999999999999999999999876554 223333 3577889999999999999999999
Q ss_pred hhHHhhhccchhHHHHHHHHHHHHhHHHH
Q 018678 317 AHAIWHATTIPLTYIWWSFIRDDAEFQTA 345 (352)
Q Consensus 317 AHALWHl~TIp~~~lwY~Fl~~D~~~~~~ 345 (352)
|||||||+|+|++.++|.|..+|..|...
T Consensus 287 aHAlWHL~t~~~t~~ly~F~~~d~~y~~n 315 (319)
T COG5237 287 AHALWHLITCISTPFLYLFWSGDVYYHGN 315 (319)
T ss_pred HHHHhHhhhccchHHHHHhhhcceeeecc
Confidence 99999999999999999999999887644
No 4
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.57 E-value=0.0071 Score=57.58 Aligned_cols=186 Identities=16% Similarity=0.069 Sum_probs=96.8
Q ss_pred ccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHH
Q 018678 128 IQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSS 207 (352)
Q Consensus 128 iQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~w~~~~~v~m~aW~wStIFHtRD~~~TEkLDYF~ 207 (352)
+=||.=++-++.=+++-..|+++. ++ . +.+. .+ ...+..+..++ +-|+.||+-=...|+-+|=..
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~----~~-~--~~~~-~~------~l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelP 88 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLA----RR-R--GLER-RF------ALLYLGLALVG-IGSFLFHATLSYWTQLLDELP 88 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----hh-c--cccc-hh------HHHHHHHHHHH-HhHHHHHhChhhhHHHhhhhh
Confidence 568988877777777766666542 11 1 1111 11 12233334444 889999998889999999777
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH----HHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHH--hh
Q 018678 208 AVALLGFSLILAILRSFNVRDEAARVMVAAPLL----AFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA--GI 281 (352)
Q Consensus 208 A~a~vl~~l~~~~vR~f~l~~~~~r~~~~~~~~----~~~~~Hi~yL~~~~fDY~YNM~~nv~~Gl~~~~lW~~~~--~~ 281 (352)
-.-..+..++....|.. ..+..|...+..+. +..+.|...= +. . ..++.+|.....+.+.-. .+
T Consensus 89 Ml~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~t~~~~~~~---~p-~----~~~~~f~~~~~~~~~~~~~~~~ 158 (262)
T PF05875_consen 89 MLWATLLFLYIVLTRRY--SSPRYRLALPLLLFIYAVVVTVLYFVLD---NP-V----FHQIAFASLVLLVILRSIYLIR 158 (262)
T ss_pred HHHHHHHHHHHHhcccc--cCchhhHHHHHHHHHHHHHHHHHHhhhc---cc-h----hhhhhHHHHHHHHHHHHHHHHH
Confidence 54333333343333332 11112222222211 1222333211 11 1 112233333322222111 11
Q ss_pred h------cCCcchhHH-HHHHHHHHHHHhhhhcc--------------CCCccchhhhHHhhhccchhHHHHHHHHHH
Q 018678 282 T------RHPSRWKLW-VVVFGGALAMLLEIYDF--------------PPYYGFLDAHAIWHATTIPLTYIWWSFIRD 338 (352)
Q Consensus 282 ~------~~~~~~k~~-~~v~~~~~amsLEl~DF--------------pP~~~liDAHALWHl~TIp~~~lwY~Fl~~ 338 (352)
. +++...++. .-++...+|..+-..|- .|+..++--|++||+.|---+++.-.+.+-
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~ 236 (262)
T PF05875_consen 159 RRVRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAY 236 (262)
T ss_pred HhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122223333 34556677888888886 355667789999999998888888777554
No 5
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.44 E-value=0.0037 Score=56.88 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhHhhhhc-------cCCCccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHHh
Q 018678 176 HIYGFLSMNSWFWSAVFHS-------RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAP-LLAFVTTHI 247 (352)
Q Consensus 176 ~~~~~v~m~aW~wStIFHt-------RD~~~TEkLDYF~A~a~vl~~l~~~~vR~f~l~~~~~r~~~~~~-~~~~~~~Hi 247 (352)
.+|.+-.+.-.+.||++|+ +.-..-.|+||.+-...+..+..-.+.-.+.-++.......... ++++....
T Consensus 45 ~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 123 (222)
T PF03006_consen 45 LIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIV- 123 (222)
T ss_pred HHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHH-
Confidence 4566767777899999999 34566779999997766665544333323311222222111111 11111111
Q ss_pred hhccccccc----ccchhhhHHHHHHHHHHHHHHHHhhhc---CCc-chhHHHHHHHHHHHHHhhhhccCCCc--cchh-
Q 018678 248 LYLNFYKLD----YGWNMKVCVVMAVAQLLIWATWAGITR---HPS-RWKLWVVVFGGALAMLLEIYDFPPYY--GFLD- 316 (352)
Q Consensus 248 ~yL~~~~fD----Y~YNM~~nv~~Gl~~~~lW~~~~~~~~---~~~-~~k~~~~v~~~~~amsLEl~DFpP~~--~liD- 316 (352)
..+ ...++ ..--+.+-++.|....+.......... .+. ........++-.+|+.+-..++|.-+ +-+|
T Consensus 124 ~~~-~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~ 202 (222)
T PF03006_consen 124 LSL-FPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDI 202 (222)
T ss_pred hhc-chhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCC
Confidence 111 11111 222333445555544444333121111 111 11122234455778889999987632 2344
Q ss_pred ---hhHHhhhccchhHHH
Q 018678 317 ---AHAIWHATTIPLTYI 331 (352)
Q Consensus 317 ---AHALWHl~TIp~~~l 331 (352)
+|.+||+.++--++.
T Consensus 203 ~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 203 WGHSHQIWHIFVVLAALC 220 (222)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 999999987654443
No 6
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=96.67 E-value=0.051 Score=50.01 Aligned_cols=93 Identities=13% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHHHHHHHHhHhhhhccC-CC----cc----chhhHHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHHHHHHh
Q 018678 179 GFLSMNSWFWSAVFHSRD-VD----LT----EKFDYSSAVALLGFSLILAILRSFNVRDEAAR--VMVAAPLLAFVTTHI 247 (352)
Q Consensus 179 ~~v~m~aW~wStIFHtRD-~~----~T----EkLDYF~A~a~vl~~l~~~~vR~f~l~~~~~r--~~~~~~~~~~~~~Hi 247 (352)
+.++..+=++|+.+|+.| .+ ++ ++|||......++. ....++..-++++...+ .++++.++++..
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~-~~vtl~~~a~~~~~~~~~l~~~~~~~~ai~~--- 109 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLS-IWVTLCAMARLDEPLKSVLHYFGALVIAIFQ--- 109 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHHH---
Confidence 678888999999999999 55 44 47888776543332 22233333334433222 233333333322
Q ss_pred hhcccccccccchhhhHHHHHHHH-HHHHHHHH
Q 018678 248 LYLNFYKLDYGWNMKVCVVMAVAQ-LLIWATWA 279 (352)
Q Consensus 248 ~yL~~~~fDY~YNM~~nv~~Gl~~-~~lW~~~~ 279 (352)
.. .+||+ .|+..-+++|++- .+-|+..+
T Consensus 110 -~~--~~~~~-~~~~~Pi~~~~~i~~~~w~~r~ 138 (186)
T PF12036_consen 110 -QK--DRWSL-WNTIGPILIGLLILLVSWLYRC 138 (186)
T ss_pred -hh--Ccccc-hhhHHHHHHHHHHHHHHHheec
Confidence 23 47785 4666666666543 44444443
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=95.87 E-value=0.36 Score=44.68 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhHhhhhccCC-----CccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH-HHHHH-HHHh
Q 018678 175 WHIYGFLSMNSWFWSAVFHSRDV-----DLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAP-LLAFV-TTHI 247 (352)
Q Consensus 175 w~~~~~v~m~aW~wStIFHtRD~-----~~TEkLDYF~A~a~vl~~l~~~~vR~f~l~~~~~r~~~~~~-~~~~~-~~Hi 247 (352)
..+|..-.+..-+.||+||+-+. .+-+|+||.+-..+|.-+..=.+.-.+ +++....+..+. .+++. +.+-
T Consensus 39 ~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsytP~~~~~~--~~~~~~~~~~~iw~la~~gi~~~ 116 (204)
T TIGR01065 39 FSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTYTPFLLLAL--PGPLGWTVLWIIWGLAIGGIIYK 116 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhhHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888999999998873 145688999877666655443333333 222222222221 11111 1111
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCcchhHHHHH---HHHHHHHHhhhhccCCCccchhhhHHhhhc
Q 018678 248 LYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHPSRWKLWVVV---FGGALAMLLEIYDFPPYYGFLDAHAIWHAT 324 (352)
Q Consensus 248 ~yL~~~~fDY~YNM~~nv~~Gl~~~~lW~~~~~~~~~~~~~k~~~~v---~~~~~amsLEl~DFpP~~~liDAHALWHl~ 324 (352)
.+...+++. .-...=+++|..-.+..-.. .+.-+. .-++.++ +.-.+++.+=..|+|--+ +-|.+||+.
T Consensus 117 -~~~~~~~r~-~r~~~y~~~G~~~v~~~~~~--~~~~~~-~~~~~l~~gg~~Y~~G~~fY~~~~p~~~---~~H~iwH~f 188 (204)
T TIGR01065 117 -LFFHKRPRW-LSLFLYLIMGWLVVLVIKPL--YHNLPG-AGFSLLAAGGLLYTVGAIFYALKWPIPF---TYHAIWHLF 188 (204)
T ss_pred -HHccCCCch-hHHHHHHHHHHHHHHHHHHH--HHhCCH-HHHHHHHHHhHHHHcchHheeecCCCCC---CcChHHHHH
Confidence 111223331 23333444454332221111 111121 1111111 223456666667877433 129999998
Q ss_pred cchhHHHHHH
Q 018678 325 TIPLTYIWWS 334 (352)
Q Consensus 325 TIp~~~lwY~ 334 (352)
.+-=+...|-
T Consensus 189 V~~g~~~h~~ 198 (204)
T TIGR01065 189 VLGASACHFV 198 (204)
T ss_pred HHHHHHHHHH
Confidence 8766666554
No 8
>PRK15087 hemolysin; Provisional
Probab=95.39 E-value=0.72 Score=43.39 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhHhhhhccCCC----ccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHHhhhc
Q 018678 176 HIYGFLSMNSWFWSAVFHSRDVD----LTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAP-LLAFVTTHILYL 250 (352)
Q Consensus 176 ~~~~~v~m~aW~wStIFHtRD~~----~TEkLDYF~A~a~vl~~l~~~~vR~f~l~~~~~r~~~~~~-~~~~~~~Hi~yL 250 (352)
.+|+.-.+.-...||+||+=..+ +=+|+||.+-..+|.-+..=.+.-.+ +.+..+.++.+. .+++. .=+..+
T Consensus 55 ~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsytP~~~~~~--~~~~~~~l~~~iW~~a~~-Gi~~~~ 131 (219)
T PRK15087 55 SLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTYTPFLLVGL--DSPLARGLMIVIWSLALL-GILFKL 131 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhhHHHHHHHc--cCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 56777778889999999986521 23469999866555444332222222 222222222211 11111 111122
Q ss_pred -ccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHH---HHHHHHHhhhhccCCCccchhhhHHhhhccc
Q 018678 251 -NFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHPSRWKLWVVVF---GGALAMLLEIYDFPPYYGFLDAHAIWHATTI 326 (352)
Q Consensus 251 -~~~~fDY~YNM~~nv~~Gl~~~~lW~~~~~~~~~~~~~k~~~~v~---~~~~amsLEl~DFpP~~~liDAHALWHl~TI 326 (352)
...+|+ ...+..=+++|.+-.+.-.-+ ....+.. -+..+++ .-+.++.+=..|-.|+ +|++||+..+
T Consensus 132 ~~~~~~r-~l~~~~Yl~mGw~~v~~~~~l--~~~~~~~-~l~~l~~GG~~Y~~G~~fY~~~~~p~-----~H~IwH~fVl 202 (219)
T PRK15087 132 AFAHRFK-VLSLVTYLAMGWLSLIVIYQL--AIKLAIG-GVTLLAVGGVVYSLGVIFYVCKRIPY-----NHAIWHGFVL 202 (219)
T ss_pred HhcCCCc-hHHHHHHHHHHHHHHHHHHHH--HHhCCHH-HHHHHHHHhHHHHhhHHHHccCCCCC-----chhHHHHHHH
Confidence 123444 234555556665444322222 1122221 1111111 2245555656676665 8999999887
Q ss_pred hhHHHHHHHH
Q 018678 327 PLTYIWWSFI 336 (352)
Q Consensus 327 p~~~lwY~Fl 336 (352)
-=+...|--+
T Consensus 203 ~ga~~H~~ai 212 (219)
T PRK15087 203 GGSVCHFLAI 212 (219)
T ss_pred HHHHHHHHHH
Confidence 7776666443
No 9
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=88.30 E-value=28 Score=34.34 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=83.9
Q ss_pred HhhhhccCCC------ccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHH-HHHH-HHHHHHHhhhcccccc--ccc
Q 018678 189 SAVFHSRDVD------LTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMV-AAPL-LAFVTTHILYLNFYKL--DYG 258 (352)
Q Consensus 189 StIFHtRD~~------~TEkLDYF~A~a~vl~~l~~~~vR~f~l~~~~~r~~~-~~~~-~~~~~~Hi~yL~~~~f--DY~ 258 (352)
|+++|+=-.- .=-||||.+-.+++.-+....+.-.|--.+. .|.+. .+.+ +.+.+.=+. + ..++ .+-
T Consensus 98 S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~-~~~iy~~~~~~lgi~~~~~~-l-~~~~~~~~~ 174 (286)
T KOG0748|consen 98 SSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPF-FRLIYLPIILVLGLLAIFVS-L-SDKFRTPKR 174 (286)
T ss_pred HHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHheee-c-hhhhCCccc
Confidence 9999985544 2236899997777766665544444432222 12122 1111 111111111 1 1122 123
Q ss_pred chhhhHHHHHHHH-HHHHHHHHhhhc--C-Cc-c---hhHHHHHHHHHHHHHhhhhccCCCc--cchhh----hHHhhhc
Q 018678 259 WNMKVCVVMAVAQ-LLIWATWAGITR--H-PS-R---WKLWVVVFGGALAMLLEIYDFPPYY--GFLDA----HAIWHAT 324 (352)
Q Consensus 259 YNM~~nv~~Gl~~-~~lW~~~~~~~~--~-~~-~---~k~~~~v~~~~~amsLEl~DFpP~~--~liDA----HALWHl~ 324 (352)
-+-|++++++..- .++=+.+..... + +. . .......++.++|..+=....|--+ +.+|- |-|||..
T Consensus 175 r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv~ 254 (286)
T KOG0748|consen 175 RPLRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHVL 254 (286)
T ss_pred hhhHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHHH
Confidence 5677777776532 111111111111 1 11 1 1112234556677778788888633 45665 9999999
Q ss_pred cchhHHHHHHHHHHHHhHHHH
Q 018678 325 TIPLTYIWWSFIRDDAEFQTA 345 (352)
Q Consensus 325 TIp~~~lwY~Fl~~D~~~~~~ 345 (352)
++--++.+++=...|.+.+-+
T Consensus 255 vv~~a~~~~~a~~~~~~~~~~ 275 (286)
T KOG0748|consen 255 VVLAALFHLEAVLLDYEWRHS 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 10
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=69.31 E-value=62 Score=31.01 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhHhhhhccCC-----CccchhhHHHHHHHHHHH
Q 018678 176 HIYGFLSMNSWFWSAVFHSRDV-----DLTEKFDYSSAVALLGFS 215 (352)
Q Consensus 176 ~~~~~v~m~aW~wStIFHtRD~-----~~TEkLDYF~A~a~vl~~ 215 (352)
.+|+.--+..-..||++|+=-. .+=+|+||.+-..+|.-+
T Consensus 59 ~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~vLIAgS 103 (226)
T COG1272 59 SIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYVLIAGS 103 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHHHHHHh
Confidence 4566656667899999997543 456899999876655544
No 11
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=57.61 E-value=60 Score=35.11 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=20.7
Q ss_pred ccchhhhHHhhhccch---hHHHHHHHHHHHHhH
Q 018678 312 YGFLDAHAIWHATTIP---LTYIWWSFIRDDAEF 342 (352)
Q Consensus 312 ~~liDAHALWHl~TIp---~~~lwY~Fl~~D~~~ 342 (352)
.+..|.|-+||..... .+++.-.++-||.+.
T Consensus 528 ~~f~D~HDiwH~~SA~alffsf~~l~~lDddL~~ 561 (570)
T PF13965_consen 528 LGFFDWHDIWHFLSAIALFFSFLVLLTLDDDLDN 561 (570)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4678999999996643 344555566566543
No 12
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=53.71 E-value=1.6e+02 Score=26.13 Aligned_cols=91 Identities=25% Similarity=0.348 Sum_probs=54.6
Q ss_pred cCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhC--CCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCC
Q 018678 120 WPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKL--PLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDV 197 (352)
Q Consensus 120 WPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~--~~~~~~~~~y~~~~~w~~~~~v~m~aW~wStIFHtRD~ 197 (352)
||+.-=.|.++|-+-+|+++-.+.-.-..-. ...+++. +..++.+.. ...+-.+.++++..+-+--++|+..|.
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~~ 116 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLLI--VYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTEH 116 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 9999999999999999998766544332111 1122221 111111111 222345678888888899999988887
Q ss_pred CccchhhHHHHHHHHHHHHH
Q 018678 198 DLTEKFDYSSAVALLGFSLI 217 (352)
Q Consensus 198 ~~TEkLDYF~A~a~vl~~l~ 217 (352)
+ ..-+.+|......+..
T Consensus 117 ~---~~H~~~a~~ff~~~~i 133 (215)
T PF10277_consen 117 P---TVHYIGAVLFFVSSFI 133 (215)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 7 3455565544444433
No 13
>PLN03148 Blue copper-like protein; Provisional
Probab=29.13 E-value=43 Score=30.75 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=13.6
Q ss_pred CCCCCC----------CccccccCCCc
Q 018678 22 SESKPW----------LGKYFYVNSWF 38 (352)
Q Consensus 22 ~~~~~~----------~~~~~~~gd~l 38 (352)
||++=| -||+|+|||.|
T Consensus 26 Gd~~GW~~~~~Y~~WA~~k~F~VGD~L 52 (167)
T PLN03148 26 GANKGWNPGINYTLWANNQTFYVGDLI 52 (167)
T ss_pred CCCCCcCCCCChhHhhcCCCCccCCEE
Confidence 677666 36899999999
No 14
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.70 E-value=31 Score=28.52 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=10.4
Q ss_pred cccccccCccccc
Q 018678 114 VKYHGKWPFIRVY 126 (352)
Q Consensus 114 ~QFhGKWPF~Rv~ 126 (352)
-||-+||||.|==
T Consensus 5 ~~fG~~Wpft~ee 17 (87)
T PF10709_consen 5 FEFGDKWPFTVEE 17 (87)
T ss_pred HHccCCCCceeee
Confidence 3788899999853
No 15
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=22.96 E-value=3.4e+02 Score=27.00 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCCccchhhhHHhhhccchhHHHHHHHHHHHHhHHHH
Q 018678 309 PPYYGFLDAHAIWHATTIPLTYIWWSFIRDDAEFQTA 345 (352)
Q Consensus 309 pP~~~liDAHALWHl~TIp~~~lwY~Fl~~D~~~~~~ 345 (352)
+|+.-.+-.||.||..|=+..+..=.+...|....+.
T Consensus 211 ~~~gi~l~~~a~Whv~s~~~~y~~~~~~~~~~~~~~~ 247 (276)
T KOG2329|consen 211 LPLGILLELHAWWHVLTSIGSYRTITFLLYDRVLYLP 247 (276)
T ss_pred cHHHHHHHHHHHHhheecCChhHHHHHHHHhHHhccC
Confidence 5555457889999999988777777888888765543
No 16
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=22.63 E-value=37 Score=33.23 Aligned_cols=7 Identities=86% Similarity=1.607 Sum_probs=0.0
Q ss_pred hhHHhhh
Q 018678 317 AHAIWHA 323 (352)
Q Consensus 317 AHALWHl 323 (352)
|||+|||
T Consensus 265 AHAIWHL 271 (298)
T KOG4243|consen 265 AHAIWHL 271 (298)
T ss_pred HHHHHHH
No 17
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=21.79 E-value=5.2e+02 Score=22.22 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=15.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhcccch
Q 018678 198 DLTEKFDYSSAVALLGFSLILAILRSFNVRD 228 (352)
Q Consensus 198 ~~TEkLDYF~A~a~vl~~l~~~~vR~f~l~~ 228 (352)
.+.+++.+.+......+... -..+.++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~-F~~~~l~~~~ 92 (205)
T PF07695_consen 63 WWSQHLEYLFLMLSFIFFLL-FVRSFLELKR 92 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCccc
Confidence 46677777776555433333 2234455533
No 18
>PRK10649 hypothetical protein; Provisional
Probab=20.77 E-value=3.1e+02 Score=29.62 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhHhhhhccCCCccchhhHHHH-H---HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhhc
Q 018678 175 WHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSA-V---ALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYL 250 (352)
Q Consensus 175 w~~~~~v~m~aW~wStIFHtRD~~~TEkLDYF~A-~---a~vl~~l~~~~vR~f~l~~~~~r~~~~~~~~~~~~~Hi~yL 250 (352)
|...++.=+.-|.+|++=|.- +-.-||+.- + ++++..+.+..+-+|...-+..+.++.+++.+..+.-+.|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~vl~~~~l~~~~Y~ 89 (577)
T PRK10649 14 WKALGWALLFFWFFSTLLQAI----IYISGYSGTNGFRDALLFSSLWLIPVFLFPRRIRIIAAVIGVVLWAASLAALCYY 89 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556669999984331 112223321 1 44445555544444322222233333333333333444444
Q ss_pred ccccccccchhhhHHH
Q 018678 251 NFYKLDYGWNMKVCVV 266 (352)
Q Consensus 251 ~~~~fDY~YNM~~nv~ 266 (352)
..+.=-..++|..|++
T Consensus 90 ~~yg~~~~~~mi~~v~ 105 (577)
T PRK10649 90 VIYGQEFSQSVLFVMF 105 (577)
T ss_pred HHhCCccCHHHHHHHH
Confidence 2333345678888774
Done!