Query 018678
Match_columns 352
No_of_seqs 133 out of 223
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 29.6 27 0.00091 23.4 1.8 12 40-51 21-32 (37)
2 3lbw_A M2 protein; proton chan 23.7 67 0.0023 19.5 2.6 14 264-277 6-19 (23)
3 3bkd_A Transmembrane domain of 22.2 72 0.0025 19.8 2.6 14 264-277 9-22 (26)
4 3ux4_A Acid-activated UREA cha 18.4 2.8E+02 0.0095 25.0 6.8 29 203-231 73-104 (195)
5 2kih_A Matrix protein 2; S31N, 16.0 1E+02 0.0036 21.1 2.6 18 263-280 12-29 (43)
6 2ljb_A M2 protein, BM2 protein 14.4 1.3E+02 0.0044 20.0 2.6 16 263-278 12-27 (35)
7 2plx_B Peptide inhibitor; heli 11.2 85 0.0029 19.2 1.0 12 39-50 15-26 (26)
8 2cmy_B Beta trypsin, veronica 9.6 97 0.0033 20.0 0.9 13 39-51 20-32 (34)
9 1pjv_A Cobatoxin 1, COTX1, GTI 7.0 1.5E+02 0.0053 19.1 1.0 18 41-58 5-22 (32)
10 2vzy_A RV0802C; transferase, G 6.6 1.1E+02 0.0038 25.2 0.1 33 99-131 183-215 (218)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=29.56 E-value=27 Score=23.37 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhc
Q 018678 40 QFWACVKQCEET 51 (352)
Q Consensus 40 ~f~~Cv~~C~~~ 51 (352)
+-|+|+.+|+..
T Consensus 21 r~QECm~qCrrR 32 (37)
T 2l2r_A 21 RVQECVSQCRRR 32 (37)
T ss_dssp GHHHHHHHHHSC
T ss_pred HHHHHHHHHHHh
Confidence 889999999865
No 2
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=23.73 E-value=67 Score=19.46 Aligned_cols=14 Identities=21% Similarity=0.769 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 018678 264 CVVMAVAQLLIWAT 277 (352)
Q Consensus 264 nv~~Gl~~~~lW~~ 277 (352)
--++|+++.++|++
T Consensus 6 a~iigIlHLiLwIl 19 (23)
T 3lbw_A 6 ASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999985
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=22.17 E-value=72 Score=19.79 Aligned_cols=14 Identities=21% Similarity=0.767 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 018678 264 CVVMAVAQLLIWAT 277 (352)
Q Consensus 264 nv~~Gl~~~~lW~~ 277 (352)
.-++|+++.++|++
T Consensus 9 a~iiGilHLiLwIl 22 (26)
T 3bkd_A 9 ASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999985
No 4
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=18.36 E-value=2.8e+02 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHH---HHHHHHHhcccchhHH
Q 018678 203 FDYSSAVALLGFS---LILAILRSFNVRDEAA 231 (352)
Q Consensus 203 LDYF~A~a~vl~~---l~~~~vR~f~l~~~~~ 231 (352)
.||++|+...+|+ +|+++-|.++++.+..
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rgl 104 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRPY 104 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 6788887778888 4567889999987653
No 5
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=16.04 E-value=1e+02 Score=21.11 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 018678 263 VCVVMAVAQLLIWATWAG 280 (352)
Q Consensus 263 ~nv~~Gl~~~~lW~~~~~ 280 (352)
+--++|+++.++|++=-+
T Consensus 12 aa~iiGIlHLiLwildRl 29 (43)
T 2kih_A 12 AANIIGILHLILWILDRL 29 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344689999999996543
No 6
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=14.38 E-value=1.3e+02 Score=19.95 Aligned_cols=16 Identities=6% Similarity=0.480 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 018678 263 VCVVMAVAQLLIWATW 278 (352)
Q Consensus 263 ~nv~~Gl~~~~lW~~~ 278 (352)
+--++|++++++|++=
T Consensus 12 aA~IigiLHlilWild 27 (35)
T 2ljb_A 12 AASIIGILHFIAWTIG 27 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3346899999999853
No 7
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=11.21 E-value=85 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.817 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhh
Q 018678 39 HQFWACVKQCEE 50 (352)
Q Consensus 39 ~~f~~Cv~~C~~ 50 (352)
..-+.|++.||+
T Consensus 15 ellrrcldncek 26 (26)
T 2plx_B 15 ELLRRCLDNCEK 26 (26)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHhcccC
Confidence 357899999974
No 8
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=9.65 E-value=97 Score=20.02 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhc
Q 018678 39 HQFWACVKQCEET 51 (352)
Q Consensus 39 ~~f~~Cv~~C~~~ 51 (352)
..-+.|++.||++
T Consensus 20 ellrrcldnceke 32 (34)
T 2cmy_B 20 ELLRRCLDNCEKE 32 (34)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhhhhc
Confidence 3578999999864
No 9
>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2
Probab=7.00 E-value=1.5e+02 Score=19.08 Aligned_cols=18 Identities=33% Similarity=0.887 Sum_probs=13.8
Q ss_pred HHHHHHHhhhcCCCCCCc
Q 018678 41 FWACVKQCEETGCVGQKC 58 (352)
Q Consensus 41 f~~Cv~~C~~~~C~~~~~ 58 (352)
.++|...|.+.++..+++
T Consensus 5 s~~C~~~Cr~~G~~~GKC 22 (32)
T 1pjv_A 5 YRTCDKDCKRRGYRSGKC 22 (32)
T ss_dssp HHHHHHHHHTTTSSEEEE
T ss_pred chhHhHHHHhcCCCCceE
Confidence 468999998778876553
No 10
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=6.58 E-value=1.1e+02 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=22.9
Q ss_pred chhHHHHHHhcCCCCcccccccCccccccccch
Q 018678 99 MVDREIKRDALGHGPVKYHGKWPFIRVYGIQEP 131 (352)
Q Consensus 99 m~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp 131 (352)
+....++..+.....+|..|-.|+.+++|+-||
T Consensus 183 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 215 (218)
T 2vzy_A 183 FRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEP 215 (218)
T ss_dssp EEEEHHHHHHHCCCCCEEESCGGGHHHHCC---
T ss_pred EEEcHHHhcccCCCCceEeChhHHHHHhCCCCC
Confidence 444455555555668999999999999999887
Done!