Query 018679
Match_columns 352
No_of_seqs 218 out of 1153
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 9.7E-64 2.1E-68 453.3 14.4 165 1-167 1-187 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 2E-13 4.3E-18 104.3 9.5 64 256-319 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 1.8E-12 3.9E-17 99.1 9.4 61 259-319 4-64 (65)
4 KOG4005 Transcription factor X 99.3 2.8E-11 6.1E-16 114.2 12.3 81 257-339 66-146 (292)
5 KOG3584 cAMP response element 99.2 2.4E-11 5.2E-16 117.3 8.7 61 251-311 282-342 (348)
6 KOG4343 bZIP transcription fac 99.2 8.9E-11 1.9E-15 120.7 10.0 71 253-323 274-344 (655)
7 KOG0709 CREB/ATF family transc 99.1 8.8E-11 1.9E-15 119.3 7.2 77 254-330 245-321 (472)
8 PF07716 bZIP_2: Basic region 99.1 4.6E-10 1E-14 83.3 8.9 50 260-310 5-54 (54)
9 KOG0837 Transcriptional activa 98.6 1.5E-07 3.2E-12 90.2 9.4 68 249-316 195-262 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.4 3.8E-09 8.2E-14 86.4 -6.4 68 254-321 24-91 (92)
11 KOG4571 Activating transcripti 98.3 2.4E-06 5.2E-11 83.1 8.9 56 261-316 228-283 (294)
12 KOG3119 Basic region leucine z 98.0 1.4E-05 3.1E-10 77.2 7.6 59 261-319 195-253 (269)
13 KOG4196 bZIP transcription fac 97.6 0.00049 1.1E-08 60.3 10.1 67 257-330 50-116 (135)
14 PF07777 MFMR: G-box binding p 97.6 0.0003 6.5E-09 65.1 8.9 122 30-172 22-174 (189)
15 KOG3863 bZIP transcription fac 97.4 0.00027 5.9E-09 74.9 6.6 72 260-331 490-562 (604)
16 PF06156 DUF972: Protein of un 96.8 0.0068 1.5E-07 51.5 7.9 50 281-330 8-57 (107)
17 PRK13169 DNA replication intia 96.5 0.012 2.6E-07 50.4 7.9 49 281-329 8-56 (110)
18 TIGR02449 conserved hypothetic 96.4 0.023 5E-07 44.5 8.0 57 281-339 7-63 (65)
19 PF06005 DUF904: Protein of un 96.4 0.024 5.2E-07 45.1 8.1 28 283-310 6-33 (72)
20 COG3074 Uncharacterized protei 96.4 0.017 3.6E-07 46.0 7.1 56 283-340 20-75 (79)
21 PRK10884 SH3 domain-containing 96.4 0.048 1E-06 51.2 11.5 48 279-326 123-170 (206)
22 TIGR02894 DNA_bind_RsfA transc 96.3 0.012 2.6E-07 53.4 7.0 52 289-342 98-149 (161)
23 PF10224 DUF2205: Predicted co 96.1 0.034 7.3E-07 45.2 7.8 48 283-330 18-65 (80)
24 PRK15422 septal ring assembly 96.1 0.03 6.6E-07 45.3 7.4 58 282-341 19-76 (79)
25 PF06005 DUF904: Protein of un 95.9 0.058 1.3E-06 42.9 8.2 47 282-328 19-65 (72)
26 KOG4005 Transcription factor X 95.9 0.082 1.8E-06 51.0 10.6 89 250-340 62-156 (292)
27 COG3074 Uncharacterized protei 95.7 0.065 1.4E-06 42.8 7.5 53 279-331 23-75 (79)
28 PRK13729 conjugal transfer pil 95.6 0.055 1.2E-06 56.5 9.1 49 281-329 76-124 (475)
29 PF02183 HALZ: Homeobox associ 95.5 0.038 8.2E-07 40.2 5.3 38 292-329 2-39 (45)
30 PF13747 DUF4164: Domain of un 95.5 0.3 6.4E-06 40.2 11.1 75 255-329 6-80 (89)
31 PF08614 ATG16: Autophagy prot 95.5 0.19 4.1E-06 46.1 11.0 72 261-332 117-188 (194)
32 PF04102 SlyX: SlyX; InterPro 95.3 0.095 2.1E-06 41.0 7.2 50 280-329 3-52 (69)
33 TIGR02449 conserved hypothetic 95.2 0.095 2.1E-06 41.1 7.0 47 283-329 2-48 (65)
34 PRK10884 SH3 domain-containing 95.1 0.3 6.4E-06 45.9 11.3 54 279-332 116-169 (206)
35 PRK15422 septal ring assembly 95.0 0.13 2.8E-06 41.7 7.3 51 280-330 24-74 (79)
36 COG4467 Regulator of replicati 94.9 0.11 2.4E-06 44.5 7.1 47 281-327 8-54 (114)
37 COG4026 Uncharacterized protei 94.8 0.16 3.4E-06 48.9 8.7 50 281-330 142-191 (290)
38 KOG4196 bZIP transcription fac 94.7 0.26 5.5E-06 43.6 9.1 51 279-329 45-108 (135)
39 KOG1414 Transcriptional activa 94.6 0.0014 2.9E-08 66.6 -6.0 67 253-319 147-217 (395)
40 PRK02793 phi X174 lysis protei 94.5 0.25 5.5E-06 39.1 7.9 50 280-329 7-56 (72)
41 PF04880 NUDE_C: NUDE protein, 94.5 0.055 1.2E-06 49.4 4.8 48 283-334 2-49 (166)
42 PF02183 HALZ: Homeobox associ 94.5 0.15 3.2E-06 37.1 6.0 42 285-326 2-43 (45)
43 PRK02119 hypothetical protein; 94.5 0.26 5.7E-06 39.1 8.0 50 280-329 8-57 (73)
44 PRK00736 hypothetical protein; 94.5 0.28 6.2E-06 38.4 8.0 49 281-329 5-53 (68)
45 PRK00295 hypothetical protein; 94.4 0.29 6.3E-06 38.3 8.0 49 281-329 5-53 (68)
46 PRK04325 hypothetical protein; 94.4 0.3 6.4E-06 38.9 8.1 49 281-329 9-57 (74)
47 KOG1853 LIS1-interacting prote 94.4 0.23 4.9E-06 48.5 8.8 61 281-343 52-123 (333)
48 PF11559 ADIP: Afadin- and alp 94.4 0.59 1.3E-05 41.0 10.8 70 260-329 45-114 (151)
49 PRK04406 hypothetical protein; 94.3 0.33 7.1E-06 38.8 8.1 49 281-329 11-59 (75)
50 PF10473 CENP-F_leu_zip: Leuci 94.1 0.86 1.9E-05 40.6 11.2 66 264-329 35-100 (140)
51 TIGR00219 mreC rod shape-deter 94.1 0.11 2.4E-06 50.7 6.1 40 289-328 67-110 (283)
52 KOG1962 B-cell receptor-associ 94.0 0.33 7.2E-06 46.1 8.8 51 277-327 161-211 (216)
53 PRK11637 AmiB activator; Provi 93.8 0.81 1.7E-05 46.7 12.0 53 277-329 71-123 (428)
54 PF06156 DUF972: Protein of un 93.6 0.3 6.6E-06 41.5 7.2 53 285-339 5-57 (107)
55 PRK00846 hypothetical protein; 93.5 0.54 1.2E-05 38.0 8.1 50 280-329 12-61 (77)
56 PF08172 CASP_C: CASP C termin 93.4 0.31 6.7E-06 47.0 7.7 39 291-329 96-134 (248)
57 PF07888 CALCOCO1: Calcium bin 93.3 0.86 1.9E-05 48.6 11.4 64 265-328 155-218 (546)
58 PF10186 Atg14: UV radiation r 93.2 1.2 2.6E-05 42.1 11.4 50 277-326 59-108 (302)
59 PF09726 Macoilin: Transmembra 93.2 0.43 9.4E-06 52.2 9.3 41 284-324 541-581 (697)
60 KOG1029 Endocytic adaptor prot 93.1 0.69 1.5E-05 51.2 10.5 12 35-46 82-93 (1118)
61 PRK13922 rod shape-determining 93.0 0.65 1.4E-05 44.5 9.3 41 288-328 69-112 (276)
62 smart00338 BRLZ basic region l 92.9 0.96 2.1E-05 34.4 8.3 40 287-326 25-64 (65)
63 COG4026 Uncharacterized protei 92.7 0.51 1.1E-05 45.5 7.9 45 284-328 138-182 (290)
64 PRK11637 AmiB activator; Provi 92.7 1.3 2.8E-05 45.2 11.5 46 280-325 81-126 (428)
65 KOG3119 Basic region leucine z 92.6 0.52 1.1E-05 45.8 8.2 47 267-313 208-254 (269)
66 PRK04406 hypothetical protein; 92.6 1 2.3E-05 36.0 8.5 56 283-340 6-61 (75)
67 PRK02119 hypothetical protein; 92.3 1.1 2.3E-05 35.7 8.1 57 282-340 3-59 (73)
68 PF04977 DivIC: Septum formati 92.2 0.36 7.7E-06 37.2 5.3 26 282-307 25-50 (80)
69 COG2433 Uncharacterized conser 92.1 0.51 1.1E-05 50.8 7.9 46 281-326 422-467 (652)
70 TIGR02209 ftsL_broad cell divi 92.1 0.57 1.2E-05 36.9 6.4 43 296-338 25-67 (85)
71 COG1579 Zn-ribbon protein, pos 92.0 2.1 4.6E-05 41.3 11.3 43 264-306 35-77 (239)
72 PF00170 bZIP_1: bZIP transcri 91.9 2 4.2E-05 32.6 9.0 37 288-324 26-62 (64)
73 PF11932 DUF3450: Protein of u 91.9 2.8 6E-05 39.9 12.0 52 277-328 52-103 (251)
74 PF03962 Mnd1: Mnd1 family; I 91.9 0.82 1.8E-05 42.3 8.1 16 311-326 112-127 (188)
75 PF14197 Cep57_CLD_2: Centroso 91.9 0.92 2E-05 35.8 7.2 48 281-328 12-66 (69)
76 PRK13169 DNA replication intia 91.7 0.8 1.7E-05 39.3 7.2 51 285-337 5-55 (110)
77 PRK10803 tol-pal system protei 91.6 1.4 3.1E-05 42.5 9.8 46 283-328 56-101 (263)
78 KOG3335 Predicted coiled-coil 91.6 0.25 5.3E-06 45.7 4.3 43 260-308 91-133 (181)
79 PF07106 TBPIP: Tat binding pr 91.5 0.7 1.5E-05 41.3 7.1 52 279-330 84-137 (169)
80 KOG1029 Endocytic adaptor prot 91.5 1.6 3.4E-05 48.6 10.8 22 308-329 436-457 (1118)
81 PF07106 TBPIP: Tat binding pr 91.5 0.59 1.3E-05 41.8 6.6 47 283-329 81-129 (169)
82 PF05700 BCAS2: Breast carcino 91.5 2.4 5.3E-05 39.8 11.0 55 275-330 163-217 (221)
83 PRK00888 ftsB cell division pr 91.5 0.79 1.7E-05 38.7 6.9 34 277-310 30-63 (105)
84 TIGR03752 conj_TIGR03752 integ 91.5 0.67 1.5E-05 48.6 7.8 36 293-328 107-142 (472)
85 COG4942 Membrane-bound metallo 91.3 1.7 3.6E-05 45.1 10.4 73 260-332 38-110 (420)
86 PF11932 DUF3450: Protein of u 91.3 3.5 7.6E-05 39.1 12.0 49 281-329 49-97 (251)
87 PF05266 DUF724: Protein of un 91.3 3.3 7.1E-05 38.6 11.4 24 268-291 97-120 (190)
88 KOG4343 bZIP transcription fac 91.2 0.83 1.8E-05 48.7 8.2 70 253-333 271-340 (655)
89 PF12718 Tropomyosin_1: Tropom 91.1 1.1 2.5E-05 39.6 7.9 44 283-326 16-59 (143)
90 PF11559 ADIP: Afadin- and alp 91.0 4.8 0.0001 35.2 11.8 51 278-328 70-120 (151)
91 PRK02793 phi X174 lysis protei 91.0 2 4.2E-05 34.1 8.3 56 284-341 4-59 (72)
92 PF15294 Leu_zip: Leucine zipp 90.9 0.7 1.5E-05 45.5 6.9 45 286-330 130-174 (278)
93 KOG0982 Centrosomal protein Nu 90.8 2.2 4.8E-05 44.4 10.6 48 282-329 298-345 (502)
94 PF13851 GAS: Growth-arrest sp 90.7 4.4 9.5E-05 37.8 11.8 63 254-316 66-128 (201)
95 KOG3650 Predicted coiled-coil 90.7 1.1 2.4E-05 38.2 7.0 46 286-331 61-106 (120)
96 PF12325 TMF_TATA_bd: TATA ele 90.7 1.4 3E-05 38.3 7.8 66 256-321 19-87 (120)
97 PF04102 SlyX: SlyX; InterPro 90.6 1.6 3.4E-05 34.1 7.4 52 285-338 1-52 (69)
98 PF10805 DUF2730: Protein of u 90.4 1.3 2.9E-05 37.3 7.4 47 282-328 43-91 (106)
99 PF09738 DUF2051: Double stran 90.4 1.5 3.3E-05 43.6 8.9 73 256-328 88-166 (302)
100 KOG1414 Transcriptional activa 90.4 0.049 1.1E-06 55.4 -1.5 63 253-322 279-341 (395)
101 PF01166 TSC22: TSC-22/dip/bun 90.4 0.29 6.4E-06 37.7 3.0 42 294-339 13-54 (59)
102 PF08172 CASP_C: CASP C termin 90.3 1.1 2.3E-05 43.4 7.6 48 277-324 89-136 (248)
103 KOG2264 Exostosin EXT1L [Signa 90.3 1.3 2.9E-05 47.6 8.8 49 281-329 93-141 (907)
104 PRK00888 ftsB cell division pr 90.2 1.2 2.6E-05 37.5 7.0 43 282-324 28-70 (105)
105 PF09744 Jnk-SapK_ap_N: JNK_SA 90.1 2.5 5.4E-05 38.3 9.3 24 292-315 86-109 (158)
106 PF08317 Spc7: Spc7 kinetochor 90.1 2.9 6.2E-05 41.5 10.6 49 281-329 209-257 (325)
107 COG2900 SlyX Uncharacterized p 90.1 2.4 5.3E-05 33.9 8.0 51 280-330 7-57 (72)
108 PF07558 Shugoshin_N: Shugoshi 89.8 0.34 7.4E-06 35.3 2.9 30 296-325 15-44 (46)
109 COG1579 Zn-ribbon protein, pos 89.8 3 6.6E-05 40.3 10.1 53 277-329 85-137 (239)
110 PF07412 Geminin: Geminin; In 89.8 0.97 2.1E-05 42.6 6.6 43 284-330 128-170 (200)
111 PF07888 CALCOCO1: Calcium bin 89.8 4 8.6E-05 43.8 11.8 48 281-328 178-225 (546)
112 PF09726 Macoilin: Transmembra 89.8 33 0.00072 38.0 19.2 69 254-322 422-494 (697)
113 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.6 5.2 0.00011 34.6 10.6 32 297-328 100-131 (132)
114 COG3883 Uncharacterized protei 89.5 1.3 2.9E-05 43.3 7.5 54 276-329 54-111 (265)
115 PF04156 IncA: IncA protein; 89.5 6.9 0.00015 35.2 11.7 55 274-328 123-177 (191)
116 PF12325 TMF_TATA_bd: TATA ele 89.4 3.7 8E-05 35.7 9.5 12 316-327 96-107 (120)
117 PRK00846 hypothetical protein; 89.4 2.6 5.5E-05 34.2 7.9 59 283-343 8-66 (77)
118 PF12709 Kinetocho_Slk19: Cent 89.2 2.1 4.7E-05 35.4 7.4 44 279-322 40-83 (87)
119 PF10186 Atg14: UV radiation r 89.2 6.2 0.00013 37.2 11.7 34 277-310 66-99 (302)
120 PF04728 LPP: Lipoprotein leuc 89.1 3.8 8.3E-05 31.4 8.2 46 282-327 4-49 (56)
121 PF05377 FlaC_arch: Flagella a 89.1 1.7 3.7E-05 33.1 6.2 36 283-318 2-37 (55)
122 PRK04325 hypothetical protein; 89.0 2.2 4.8E-05 33.9 7.2 55 283-339 4-58 (74)
123 TIGR02894 DNA_bind_RsfA transc 89.0 4.5 9.8E-05 37.0 10.0 36 280-315 110-145 (161)
124 COG4467 Regulator of replicati 88.9 1.7 3.8E-05 37.4 6.9 50 285-336 5-54 (114)
125 PF07716 bZIP_2: Basic region 88.7 5.6 0.00012 29.3 8.8 29 294-322 24-52 (54)
126 PF05266 DUF724: Protein of un 88.7 5.3 0.00012 37.2 10.6 51 278-328 128-178 (190)
127 PF14197 Cep57_CLD_2: Centroso 88.6 3.2 6.9E-05 32.7 7.8 27 284-310 8-34 (69)
128 PF04849 HAP1_N: HAP1 N-termin 88.5 1.2 2.6E-05 44.4 6.6 36 294-329 212-247 (306)
129 PF10224 DUF2205: Predicted co 88.5 2.1 4.7E-05 34.8 6.9 38 291-328 19-56 (80)
130 PF09304 Cortex-I_coil: Cortex 88.4 2.2 4.8E-05 36.6 7.2 54 265-318 21-74 (107)
131 PF08647 BRE1: BRE1 E3 ubiquit 88.4 9.7 0.00021 31.5 10.9 74 263-338 6-79 (96)
132 PRK09039 hypothetical protein; 88.2 5.2 0.00011 40.2 11.0 35 291-325 140-174 (343)
133 PF14662 CCDC155: Coiled-coil 88.2 3.1 6.7E-05 39.1 8.6 42 284-325 98-139 (193)
134 PF04999 FtsL: Cell division p 88.2 1.7 3.8E-05 35.3 6.3 48 292-339 32-79 (97)
135 PF12711 Kinesin-relat_1: Kine 88.1 2.6 5.7E-05 34.8 7.3 37 293-329 22-64 (86)
136 PRK00295 hypothetical protein; 88.1 3.2 6.9E-05 32.5 7.4 51 286-338 3-53 (68)
137 PF04111 APG6: Autophagy prote 88.0 8.8 0.00019 38.1 12.3 10 315-324 112-121 (314)
138 PF13815 Dzip-like_N: Iguana/D 88.0 1.8 3.8E-05 37.0 6.5 38 287-324 79-116 (118)
139 PF10211 Ax_dynein_light: Axon 87.8 2.9 6.3E-05 38.6 8.3 56 283-339 122-177 (189)
140 PF05103 DivIVA: DivIVA protei 87.8 0.29 6.3E-06 41.3 1.6 48 281-328 25-72 (131)
141 PF10473 CENP-F_leu_zip: Leuci 87.7 8.2 0.00018 34.5 10.7 45 293-339 57-101 (140)
142 PF05377 FlaC_arch: Flagella a 87.5 2.1 4.5E-05 32.7 5.8 38 290-327 2-39 (55)
143 COG3883 Uncharacterized protei 87.5 2.4 5.1E-05 41.6 7.8 51 279-329 50-100 (265)
144 KOG0971 Microtubule-associated 87.4 6.6 0.00014 44.5 11.8 28 300-327 330-357 (1243)
145 PF08826 DMPK_coil: DMPK coile 87.4 4.2 9.2E-05 31.5 7.6 44 286-329 16-59 (61)
146 KOG0977 Nuclear envelope prote 87.3 2.1 4.6E-05 45.8 7.9 55 276-330 136-190 (546)
147 PF04977 DivIC: Septum formati 87.3 2.5 5.5E-05 32.4 6.5 38 298-335 20-58 (80)
148 PF12329 TMF_DNA_bd: TATA elem 87.2 4.4 9.5E-05 32.2 7.9 51 279-329 10-60 (74)
149 PF08614 ATG16: Autophagy prot 87.2 8.1 0.00018 35.4 10.8 44 282-325 131-174 (194)
150 KOG2391 Vacuolar sorting prote 87.1 5.9 0.00013 40.2 10.5 61 254-316 214-274 (365)
151 PF13870 DUF4201: Domain of un 87.1 9.5 0.00021 34.3 11.0 59 281-339 91-149 (177)
152 KOG4571 Activating transcripti 87.0 4.3 9.4E-05 40.3 9.3 33 280-312 254-286 (294)
153 PF05278 PEARLI-4: Arabidopsis 87.0 11 0.00023 37.2 11.9 49 280-328 206-254 (269)
154 PF09755 DUF2046: Uncharacteri 86.9 2.1 4.5E-05 42.9 7.1 37 287-323 26-62 (310)
155 PF06785 UPF0242: Uncharacteri 86.9 6.2 0.00013 40.1 10.4 51 278-328 124-174 (401)
156 KOG0804 Cytoplasmic Zn-finger 86.8 5.9 0.00013 41.6 10.5 77 265-343 369-453 (493)
157 PF15397 DUF4618: Domain of un 86.8 8.6 0.00019 37.6 11.1 73 256-330 140-221 (258)
158 PF10669 Phage_Gp23: Protein g 86.7 6.9 0.00015 33.4 9.1 48 252-303 47-94 (121)
159 PRK10803 tol-pal system protei 86.7 1.8 4E-05 41.8 6.5 50 277-326 57-106 (263)
160 PF09744 Jnk-SapK_ap_N: JNK_SA 86.7 7.6 0.00017 35.2 10.1 46 284-329 92-137 (158)
161 smart00340 HALZ homeobox assoc 86.6 1.4 3E-05 32.1 4.2 27 304-330 7-33 (44)
162 KOG1318 Helix loop helix trans 86.6 8.5 0.00018 40.0 11.5 28 261-288 230-257 (411)
163 PF04156 IncA: IncA protein; 86.3 13 0.00029 33.3 11.6 45 284-328 126-170 (191)
164 PRK14162 heat shock protein Gr 86.3 1.9 4.2E-05 40.3 6.3 9 299-307 57-65 (194)
165 PF11180 DUF2968: Protein of u 86.3 14 0.00029 34.8 11.7 84 256-342 102-185 (192)
166 KOG0250 DNA repair protein RAD 86.2 6.9 0.00015 44.8 11.5 47 282-328 380-427 (1074)
167 KOG1103 Predicted coiled-coil 86.1 3.2 7E-05 42.5 8.1 60 270-329 227-286 (561)
168 PF10226 DUF2216: Uncharacteri 86.0 7 0.00015 36.7 9.7 19 256-274 19-37 (195)
169 PF10211 Ax_dynein_light: Axon 85.9 6.9 0.00015 36.2 9.7 47 280-326 126-187 (189)
170 KOG4001 Axonemal dynein light 85.6 9.4 0.0002 36.5 10.4 29 303-331 229-257 (259)
171 PRK03992 proteasome-activating 85.6 2.5 5.5E-05 42.7 7.2 61 283-343 3-64 (389)
172 PF05529 Bap31: B-cell recepto 85.6 6.2 0.00013 35.9 9.1 37 293-329 152-188 (192)
173 PF15035 Rootletin: Ciliary ro 85.5 3.7 8E-05 37.9 7.6 40 288-327 74-113 (182)
174 PF04728 LPP: Lipoprotein leuc 85.4 4.8 0.0001 30.8 6.9 41 288-328 3-43 (56)
175 PRK00736 hypothetical protein; 85.3 4.1 8.8E-05 31.9 6.7 53 285-339 2-54 (68)
176 PRK14143 heat shock protein Gr 85.3 2.6 5.6E-05 40.6 6.7 19 285-303 85-103 (238)
177 PF04111 APG6: Autophagy prote 85.2 16 0.00034 36.4 12.5 18 310-327 114-131 (314)
178 PF12808 Mto2_bdg: Micro-tubul 85.2 3.2 6.9E-05 31.3 5.8 47 279-328 2-48 (52)
179 PTZ00454 26S protease regulato 85.2 3.5 7.5E-05 42.2 8.0 47 296-342 30-77 (398)
180 COG1792 MreC Cell shape-determ 85.2 2.5 5.5E-05 41.4 6.8 48 279-330 64-111 (284)
181 PRK13729 conjugal transfer pil 85.0 3 6.6E-05 43.9 7.6 50 280-329 82-131 (475)
182 PF11500 Cut12: Spindle pole b 85.0 8.7 0.00019 34.9 9.5 58 256-313 80-137 (152)
183 PRK14155 heat shock protein Gr 84.8 1.9 4.1E-05 40.8 5.4 18 285-302 31-48 (208)
184 PRK14158 heat shock protein Gr 84.7 2.9 6.2E-05 39.2 6.5 24 282-305 55-78 (194)
185 KOG0977 Nuclear envelope prote 84.7 7.8 0.00017 41.6 10.5 61 265-325 132-192 (546)
186 KOG1962 B-cell receptor-associ 84.4 7.9 0.00017 37.0 9.4 22 304-325 181-202 (216)
187 KOG0946 ER-Golgi vesicle-tethe 84.3 9.3 0.0002 42.9 11.0 63 267-329 657-719 (970)
188 PF04871 Uso1_p115_C: Uso1 / p 84.1 18 0.0004 31.8 11.0 46 283-328 57-110 (136)
189 TIGR03545 conserved hypothetic 84.1 6.8 0.00015 42.1 9.9 67 259-325 169-242 (555)
190 PF08826 DMPK_coil: DMPK coile 84.1 11 0.00025 29.2 8.5 36 281-316 25-60 (61)
191 cd07596 BAR_SNX The Bin/Amphip 84.0 15 0.00031 32.8 10.7 63 263-328 113-182 (218)
192 PF12709 Kinetocho_Slk19: Cent 84.0 3.6 7.8E-05 34.1 6.1 42 287-328 33-75 (87)
193 KOG2010 Double stranded RNA bi 83.9 4.4 9.5E-05 41.1 7.8 49 280-328 153-201 (405)
194 PF08232 Striatin: Striatin fa 83.8 7.6 0.00017 34.1 8.5 55 281-335 25-79 (134)
195 KOG4797 Transcriptional regula 83.7 2.5 5.4E-05 36.5 5.2 28 296-323 68-95 (123)
196 smart00787 Spc7 Spc7 kinetocho 83.7 15 0.00032 36.7 11.5 47 282-328 205-251 (312)
197 KOG0995 Centromere-associated 83.7 5.9 0.00013 42.6 9.1 49 280-328 279-327 (581)
198 PF06216 RTBV_P46: Rice tungro 83.6 5.6 0.00012 39.2 8.2 46 267-315 67-112 (389)
199 PF10805 DUF2730: Protein of u 83.5 14 0.0003 31.1 9.6 50 279-328 47-98 (106)
200 PRK10698 phage shock protein P 83.4 14 0.00031 34.9 10.8 69 272-340 87-158 (222)
201 PF10226 DUF2216: Uncharacteri 83.2 5.8 0.00013 37.3 7.8 38 293-330 106-143 (195)
202 KOG0288 WD40 repeat protein Ti 83.2 9.1 0.0002 39.9 9.9 22 283-304 50-71 (459)
203 PF13118 DUF3972: Protein of u 83.2 4.9 0.00011 35.4 6.9 46 283-328 80-125 (126)
204 PF15058 Speriolin_N: Sperioli 83.1 3 6.5E-05 39.2 5.9 38 283-328 7-44 (200)
205 PRK14148 heat shock protein Gr 83.1 3.8 8.3E-05 38.4 6.7 56 286-341 45-100 (195)
206 PRK09039 hypothetical protein; 83.0 4.6 0.0001 40.5 7.7 39 289-327 124-162 (343)
207 PRK14160 heat shock protein Gr 83.0 4.2 9.2E-05 38.6 7.0 61 283-343 63-123 (211)
208 PF07989 Microtub_assoc: Micro 83.0 6.2 0.00013 31.6 6.9 27 285-311 4-30 (75)
209 KOG0982 Centrosomal protein Nu 82.9 11 0.00023 39.6 10.3 55 276-332 280-334 (502)
210 PF02403 Seryl_tRNA_N: Seryl-t 82.8 6.5 0.00014 32.4 7.4 29 300-328 72-100 (108)
211 PF11365 DUF3166: Protein of u 82.8 4.3 9.3E-05 34.2 6.2 46 283-328 3-48 (96)
212 PF04849 HAP1_N: HAP1 N-termin 82.7 12 0.00026 37.5 10.3 48 280-327 240-287 (306)
213 PF13851 GAS: Growth-arrest sp 82.6 22 0.00047 33.2 11.5 26 303-328 94-119 (201)
214 PF09304 Cortex-I_coil: Cortex 82.4 29 0.00063 29.9 11.1 48 278-325 27-74 (107)
215 PF15556 Zwint: ZW10 interacto 82.4 25 0.00055 33.7 11.7 62 265-326 118-179 (252)
216 PRK14127 cell division protein 82.4 3.1 6.6E-05 35.7 5.3 40 281-320 30-69 (109)
217 PF05667 DUF812: Protein of un 82.2 5.9 0.00013 42.9 8.6 44 283-326 337-380 (594)
218 PF14662 CCDC155: Coiled-coil 82.2 6.5 0.00014 37.0 7.7 48 280-327 66-113 (193)
219 PF10146 zf-C4H2: Zinc finger- 82.1 21 0.00045 34.3 11.4 44 287-330 59-102 (230)
220 PRK14140 heat shock protein Gr 82.1 3.2 7E-05 38.7 5.8 34 283-316 39-72 (191)
221 TIGR02231 conserved hypothetic 81.9 17 0.00038 38.0 11.8 47 284-330 127-173 (525)
222 PF02403 Seryl_tRNA_N: Seryl-t 81.7 19 0.00042 29.6 9.8 10 317-326 75-84 (108)
223 KOG0980 Actin-binding protein 81.3 10 0.00022 42.8 10.1 77 263-341 448-524 (980)
224 PF13815 Dzip-like_N: Iguana/D 81.3 5.8 0.00013 33.8 6.6 39 291-329 76-114 (118)
225 KOG0971 Microtubule-associated 81.2 12 0.00026 42.6 10.5 47 284-330 328-389 (1243)
226 COG2919 Septum formation initi 81.2 26 0.00055 30.0 10.5 36 296-331 51-86 (117)
227 TIGR02977 phageshock_pspA phag 80.9 13 0.00028 34.8 9.4 55 280-334 98-152 (219)
228 PF04201 TPD52: Tumour protein 80.7 8.7 0.00019 35.2 7.9 16 321-336 107-122 (162)
229 PRK14153 heat shock protein Gr 80.7 3.5 7.7E-05 38.6 5.5 25 281-305 47-71 (194)
230 KOG2391 Vacuolar sorting prote 80.7 12 0.00027 38.0 9.6 51 277-327 228-278 (365)
231 PF14282 FlxA: FlxA-like prote 80.5 7.3 0.00016 32.8 6.9 46 284-329 29-78 (106)
232 COG4717 Uncharacterized conser 80.4 11 0.00023 42.7 9.8 72 269-340 729-819 (984)
233 KOG0288 WD40 repeat protein Ti 80.4 18 0.00038 37.9 10.8 50 267-318 29-78 (459)
234 PF00038 Filament: Intermediat 80.4 33 0.00071 33.1 12.3 39 290-328 211-249 (312)
235 PF01166 TSC22: TSC-22/dip/bun 80.3 1.9 4.2E-05 33.2 3.0 26 283-308 16-41 (59)
236 PF03980 Nnf1: Nnf1 ; InterPr 80.2 2.8 6E-05 34.9 4.3 30 279-308 78-107 (109)
237 KOG0249 LAR-interacting protei 80.1 14 0.0003 41.1 10.4 41 289-329 217-257 (916)
238 KOG2077 JNK/SAPK-associated pr 79.9 4.1 8.9E-05 44.1 6.3 47 284-330 325-371 (832)
239 PF08961 DUF1875: Domain of un 79.8 0.57 1.2E-05 44.8 0.0 45 277-321 118-162 (243)
240 PRK14145 heat shock protein Gr 79.8 6 0.00013 37.2 6.7 55 286-340 50-104 (196)
241 PF12808 Mto2_bdg: Micro-tubul 79.7 5.7 0.00012 30.0 5.3 29 281-309 22-50 (52)
242 PRK14161 heat shock protein Gr 79.7 5.2 0.00011 36.9 6.2 17 325-341 63-79 (178)
243 TIGR00606 rad50 rad50. This fa 79.2 16 0.00035 42.7 11.4 14 273-286 849-862 (1311)
244 TIGR03752 conj_TIGR03752 integ 79.2 17 0.00037 38.4 10.4 25 305-329 112-136 (472)
245 TIGR02209 ftsL_broad cell divi 79.2 6.9 0.00015 30.7 6.0 31 278-308 28-58 (85)
246 PF12718 Tropomyosin_1: Tropom 79.1 10 0.00022 33.6 7.7 52 277-328 31-85 (143)
247 COG1382 GimC Prefoldin, chaper 79.1 9.4 0.0002 33.4 7.2 32 282-313 71-102 (119)
248 PRK05431 seryl-tRNA synthetase 79.0 30 0.00065 35.8 12.2 26 301-326 72-97 (425)
249 PF04012 PspA_IM30: PspA/IM30 78.9 26 0.00056 32.4 10.7 66 270-335 84-152 (221)
250 PF04871 Uso1_p115_C: Uso1 / p 78.8 35 0.00076 30.1 10.9 7 333-339 106-112 (136)
251 PF07889 DUF1664: Protein of u 78.8 21 0.00045 31.4 9.4 52 278-329 65-116 (126)
252 KOG4643 Uncharacterized coiled 78.8 18 0.00039 41.5 11.0 76 253-328 490-587 (1195)
253 PF14817 HAUS5: HAUS augmin-li 78.7 7.7 0.00017 42.3 8.1 43 283-325 81-123 (632)
254 smart00340 HALZ homeobox assoc 78.7 5.2 0.00011 29.1 4.6 27 282-308 6-32 (44)
255 PF05837 CENP-H: Centromere pr 78.6 6.8 0.00015 33.0 6.2 14 292-305 28-41 (106)
256 PF05278 PEARLI-4: Arabidopsis 78.6 32 0.0007 33.9 11.6 42 287-328 206-247 (269)
257 PF07047 OPA3: Optic atrophy 3 78.5 4.7 0.0001 35.3 5.3 37 259-301 96-132 (134)
258 PF10481 CENP-F_N: Cenp-F N-te 78.5 20 0.00044 35.6 10.1 31 300-330 100-130 (307)
259 KOG4593 Mitotic checkpoint pro 78.4 14 0.0003 40.7 9.8 65 266-330 483-580 (716)
260 KOG0709 CREB/ATF family transc 78.4 6.1 0.00013 41.5 6.9 40 290-329 274-313 (472)
261 PF09789 DUF2353: Uncharacteri 78.3 19 0.00041 36.3 10.1 47 284-330 68-114 (319)
262 PF13935 Ead_Ea22: Ead/Ea22-li 78.3 22 0.00049 31.1 9.6 48 281-328 90-138 (139)
263 PF00038 Filament: Intermediat 78.0 32 0.00069 33.2 11.4 32 277-308 219-250 (312)
264 TIGR02231 conserved hypothetic 77.9 23 0.00051 37.1 11.2 47 290-338 126-172 (525)
265 PF13935 Ead_Ea22: Ead/Ea22-li 77.8 15 0.00033 32.2 8.4 52 278-329 78-132 (139)
266 PF05529 Bap31: B-cell recepto 77.8 14 0.0003 33.7 8.4 22 296-317 162-183 (192)
267 PF05812 Herpes_BLRF2: Herpesv 77.6 4 8.6E-05 35.6 4.5 29 279-307 1-29 (118)
268 PTZ00454 26S protease regulato 77.5 9.6 0.00021 39.0 8.0 38 286-323 27-64 (398)
269 PF03670 UPF0184: Uncharacteri 77.3 17 0.00038 29.9 7.9 48 282-329 27-74 (83)
270 PF15030 DUF4527: Protein of u 77.0 27 0.00058 34.3 10.3 58 256-313 11-69 (277)
271 PRK14144 heat shock protein Gr 76.8 7.4 0.00016 36.7 6.4 17 285-301 63-79 (199)
272 PF12999 PRKCSH-like: Glucosid 76.8 16 0.00034 34.0 8.4 34 276-309 141-174 (176)
273 PF04859 DUF641: Plant protein 76.6 8.1 0.00017 34.2 6.2 42 283-324 89-130 (131)
274 PRK14157 heat shock protein Gr 76.6 7.1 0.00015 37.5 6.3 15 277-291 101-115 (227)
275 PF08537 NBP1: Fungal Nap bind 76.5 24 0.00053 35.6 10.2 24 260-283 122-145 (323)
276 PF05557 MAD: Mitotic checkpoi 76.4 11 0.00024 41.2 8.6 51 282-332 511-589 (722)
277 PF01486 K-box: K-box region; 76.4 41 0.00089 27.6 10.3 46 281-326 49-99 (100)
278 PF11365 DUF3166: Protein of u 76.3 9.6 0.00021 32.1 6.3 39 291-329 4-42 (96)
279 PF15035 Rootletin: Ciliary ro 76.2 14 0.0003 34.2 7.9 30 286-315 86-115 (182)
280 PF04568 IATP: Mitochondrial A 76.2 16 0.00034 31.0 7.6 46 266-311 54-99 (100)
281 KOG2891 Surface glycoprotein [ 76.0 28 0.00061 35.0 10.3 22 272-293 353-374 (445)
282 KOG0239 Kinesin (KAR3 subfamil 75.9 29 0.00064 38.2 11.6 22 316-337 300-321 (670)
283 PRK02224 chromosome segregatio 75.9 31 0.00066 38.2 11.9 8 284-291 512-519 (880)
284 PF11180 DUF2968: Protein of u 75.8 28 0.0006 32.8 9.8 28 288-315 154-181 (192)
285 PF14645 Chibby: Chibby family 75.4 11 0.00024 32.5 6.7 41 284-324 74-114 (116)
286 PF11544 Spc42p: Spindle pole 75.4 23 0.0005 28.8 7.9 37 287-323 18-54 (76)
287 TIGR00414 serS seryl-tRNA synt 75.3 24 0.00051 36.4 10.2 29 299-327 73-101 (418)
288 PF14916 CCDC92: Coiled-coil d 75.3 5.9 0.00013 30.7 4.4 41 282-325 4-44 (60)
289 PF06210 DUF1003: Protein of u 75.2 14 0.0003 31.5 7.1 51 265-320 55-105 (108)
290 KOG0933 Structural maintenance 75.2 28 0.0006 40.2 11.2 50 280-329 814-863 (1174)
291 COG2919 Septum formation initi 75.2 12 0.00025 32.1 6.7 46 283-328 52-97 (117)
292 COG2900 SlyX Uncharacterized p 75.1 19 0.00042 28.9 7.4 56 284-341 4-59 (72)
293 PRK12705 hypothetical protein; 75.1 43 0.00093 35.8 12.2 43 286-328 93-135 (508)
294 PHA03162 hypothetical protein; 75.0 2.1 4.6E-05 37.9 2.2 27 278-304 10-36 (135)
295 PRK04863 mukB cell division pr 75.0 29 0.00064 41.6 12.0 15 264-278 325-339 (1486)
296 PF14988 DUF4515: Domain of un 74.9 48 0.001 31.2 11.3 48 283-330 151-198 (206)
297 PF10779 XhlA: Haemolysin XhlA 74.7 16 0.00034 28.5 6.8 35 286-320 18-52 (71)
298 PF15070 GOLGA2L5: Putative go 74.7 24 0.00051 38.6 10.4 52 278-329 119-173 (617)
299 PF09730 BicD: Microtubule-ass 74.7 27 0.00058 38.8 10.9 37 292-328 101-140 (717)
300 PF13863 DUF4200: Domain of un 74.6 34 0.00073 28.7 9.4 29 300-328 79-107 (126)
301 PF04880 NUDE_C: NUDE protein, 74.5 4.2 9.1E-05 37.3 4.1 26 299-325 28-53 (166)
302 COG2433 Uncharacterized conser 74.2 29 0.00063 37.9 10.7 27 282-308 437-463 (652)
303 KOG0249 LAR-interacting protei 74.0 26 0.00057 39.0 10.4 43 281-323 216-258 (916)
304 PF03962 Mnd1: Mnd1 family; I 73.8 41 0.00088 31.1 10.4 22 277-298 106-127 (188)
305 PRK15396 murein lipoprotein; P 73.8 23 0.0005 28.7 7.7 45 282-326 26-70 (78)
306 cd07596 BAR_SNX The Bin/Amphip 73.7 58 0.0013 28.9 11.2 53 276-328 112-171 (218)
307 KOG0483 Transcription factor H 73.7 5.8 0.00012 37.3 4.8 39 288-326 112-150 (198)
308 KOG2264 Exostosin EXT1L [Signa 73.5 32 0.0007 37.6 10.7 43 281-323 107-149 (907)
309 KOG0161 Myosin class II heavy 73.5 18 0.00039 44.3 9.8 67 265-331 1644-1710(1930)
310 KOG3248 Transcription factor T 73.5 10 0.00022 38.7 6.7 53 26-81 72-128 (421)
311 TIGR03185 DNA_S_dndD DNA sulfu 73.4 34 0.00073 37.0 11.2 46 282-327 422-467 (650)
312 PHA03155 hypothetical protein; 73.4 4.4 9.6E-05 35.1 3.7 25 282-306 9-33 (115)
313 PRK14160 heat shock protein Gr 73.3 21 0.00045 34.0 8.5 40 285-324 58-97 (211)
314 COG4372 Uncharacterized protei 73.3 41 0.00088 35.2 11.0 41 289-329 138-178 (499)
315 COG1196 Smc Chromosome segrega 72.9 32 0.00069 39.9 11.5 43 283-325 441-483 (1163)
316 PF10506 MCC-bdg_PDZ: PDZ doma 72.9 14 0.00029 29.3 6.0 38 285-322 2-39 (67)
317 PF15236 CCDC66: Coiled-coil d 72.9 76 0.0017 29.0 14.0 43 248-290 40-82 (157)
318 PF06810 Phage_GP20: Phage min 72.8 13 0.00028 33.4 6.7 33 280-312 33-68 (155)
319 PRK03992 proteasome-activating 72.8 11 0.00024 38.1 7.1 41 283-323 10-50 (389)
320 TIGR02680 conserved hypothetic 72.7 38 0.00083 40.1 12.2 56 280-335 275-330 (1353)
321 PF05600 DUF773: Protein of un 72.5 23 0.00049 37.7 9.4 58 268-327 435-492 (507)
322 PF07407 Seadorna_VP6: Seadorn 72.4 12 0.00026 38.1 6.9 13 281-293 46-58 (420)
323 PRK11546 zraP zinc resistance 72.3 14 0.00031 33.2 6.8 42 280-321 60-108 (143)
324 PF13805 Pil1: Eisosome compon 72.3 26 0.00056 34.6 9.1 46 282-327 166-213 (271)
325 PF07200 Mod_r: Modifier of ru 71.8 21 0.00045 31.1 7.7 49 265-314 40-88 (150)
326 KOG3819 Uncharacterized conser 71.6 36 0.00079 36.0 10.4 78 254-331 48-175 (513)
327 PF09738 DUF2051: Double stran 71.6 46 0.001 33.3 10.8 51 281-331 112-162 (302)
328 TIGR01554 major_cap_HK97 phage 71.6 22 0.00047 35.6 8.7 26 282-307 35-60 (378)
329 PF12999 PRKCSH-like: Glucosid 71.4 28 0.00061 32.3 8.7 10 207-216 89-98 (176)
330 KOG1853 LIS1-interacting prote 71.3 28 0.0006 34.5 9.0 46 281-326 133-181 (333)
331 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.3 67 0.0015 27.7 11.2 19 311-329 100-118 (132)
332 PRK13922 rod shape-determining 71.0 17 0.00036 34.8 7.5 35 282-316 70-107 (276)
333 KOG0250 DNA repair protein RAD 71.0 42 0.0009 38.9 11.4 46 284-329 375-421 (1074)
334 COG1340 Uncharacterized archae 70.6 69 0.0015 32.1 11.7 44 285-328 45-88 (294)
335 PF06810 Phage_GP20: Phage min 70.6 37 0.0008 30.5 9.1 16 304-319 53-68 (155)
336 PF07798 DUF1640: Protein of u 70.5 18 0.0004 32.7 7.3 46 284-329 47-93 (177)
337 PF01920 Prefoldin_2: Prefoldi 70.5 14 0.0003 29.7 5.9 39 291-329 65-103 (106)
338 KOG2236 Uncharacterized conser 70.2 7 0.00015 41.1 5.0 30 47-84 424-453 (483)
339 COG4942 Membrane-bound metallo 70.2 35 0.00075 35.7 9.9 36 281-316 66-101 (420)
340 PF10168 Nup88: Nuclear pore c 70.1 36 0.00078 37.8 10.6 35 281-315 579-613 (717)
341 PF10482 CtIP_N: Tumour-suppre 70.1 26 0.00057 30.6 7.6 47 282-328 15-61 (120)
342 PF07334 IFP_35_N: Interferon- 70.0 8.8 0.00019 31.1 4.5 25 291-315 3-27 (76)
343 PF05667 DUF812: Protein of un 70.0 16 0.00036 39.5 7.9 38 282-319 343-380 (594)
344 PF13514 AAA_27: AAA domain 70.0 51 0.0011 38.0 12.2 50 291-340 892-941 (1111)
345 PF08232 Striatin: Striatin fa 70.0 27 0.00058 30.7 7.9 59 265-323 16-74 (134)
346 COG1196 Smc Chromosome segrega 69.9 37 0.0008 39.4 11.1 14 27-40 527-540 (1163)
347 PF15136 UPF0449: Uncharacteri 69.8 24 0.00051 29.9 7.1 39 289-327 58-96 (97)
348 PHA03162 hypothetical protein; 69.7 6.7 0.00014 34.9 4.0 30 303-332 14-43 (135)
349 COG1730 GIM5 Predicted prefold 69.7 23 0.00049 31.9 7.5 28 296-323 109-136 (145)
350 KOG4360 Uncharacterized coiled 69.7 17 0.00038 38.9 7.7 49 281-329 219-267 (596)
351 PF08581 Tup_N: Tup N-terminal 69.7 37 0.00079 27.6 8.0 47 282-328 26-76 (79)
352 PF07200 Mod_r: Modifier of ru 69.7 32 0.00069 29.9 8.3 45 284-328 44-88 (150)
353 COG1340 Uncharacterized archae 69.6 47 0.001 33.2 10.3 31 283-313 50-80 (294)
354 TIGR03495 phage_LysB phage lys 69.5 70 0.0015 28.5 10.4 41 298-339 71-111 (135)
355 PF11544 Spc42p: Spindle pole 69.3 43 0.00093 27.2 8.2 46 284-329 8-53 (76)
356 PF09730 BicD: Microtubule-ass 69.2 18 0.00038 40.2 8.0 47 283-329 71-117 (717)
357 PF13094 CENP-Q: CENP-Q, a CEN 69.1 21 0.00047 31.6 7.3 55 281-335 41-95 (160)
358 PF14282 FlxA: FlxA-like prote 69.1 23 0.00049 29.8 7.0 8 284-291 54-61 (106)
359 KOG4797 Transcriptional regula 69.1 10 0.00022 32.9 4.9 26 282-307 68-93 (123)
360 PF04899 MbeD_MobD: MbeD/MobD 69.1 24 0.00051 28.1 6.6 29 299-327 32-60 (70)
361 PF06216 RTBV_P46: Rice tungro 69.0 13 0.00028 36.8 6.2 50 281-330 64-113 (389)
362 PF10883 DUF2681: Protein of u 69.0 21 0.00045 29.6 6.5 22 287-308 29-50 (87)
363 PF03980 Nnf1: Nnf1 ; InterPr 68.9 37 0.0008 28.2 8.2 31 299-329 77-107 (109)
364 TIGR03185 DNA_S_dndD DNA sulfu 68.9 63 0.0014 35.0 12.1 32 284-315 212-243 (650)
365 PF09766 FimP: Fms-interacting 68.9 23 0.0005 35.8 8.3 52 276-327 103-154 (355)
366 COG1842 PspA Phage shock prote 68.8 98 0.0021 29.6 12.0 36 286-321 97-132 (225)
367 PF10458 Val_tRNA-synt_C: Valy 68.7 48 0.001 25.3 8.2 47 282-328 5-65 (66)
368 KOG0999 Microtubule-associated 68.7 44 0.00096 36.4 10.4 41 289-329 171-214 (772)
369 PF07047 OPA3: Optic atrophy 3 68.4 11 0.00023 33.1 5.0 28 281-308 105-132 (134)
370 PF06818 Fez1: Fez1; InterPro 68.2 11 0.00024 35.7 5.4 29 300-328 78-106 (202)
371 PRK10361 DNA recombination pro 68.1 65 0.0014 34.2 11.6 24 285-308 64-87 (475)
372 KOG0980 Actin-binding protein 68.1 56 0.0012 37.2 11.5 75 254-328 369-450 (980)
373 PF06785 UPF0242: Uncharacteri 68.0 48 0.001 34.0 10.1 69 261-329 76-154 (401)
374 KOG4370 Ral-GTPase effector RL 67.9 19 0.00041 37.9 7.4 55 283-337 408-462 (514)
375 PRK03947 prefoldin subunit alp 67.8 25 0.00055 30.3 7.3 24 287-310 107-130 (140)
376 PF06698 DUF1192: Protein of u 67.8 18 0.0004 27.9 5.6 25 283-307 23-47 (59)
377 PLN02678 seryl-tRNA synthetase 67.8 42 0.0009 35.3 10.1 30 299-328 75-104 (448)
378 PF05911 DUF869: Plant protein 67.7 33 0.00071 38.5 9.7 63 281-343 92-175 (769)
379 KOG2129 Uncharacterized conser 67.7 7.5 0.00016 40.7 4.5 40 284-323 46-85 (552)
380 PF10234 Cluap1: Clusterin-ass 67.6 75 0.0016 31.3 11.2 79 251-329 138-238 (267)
381 PRK04863 mukB cell division pr 67.5 46 0.00099 40.0 11.4 35 288-322 362-396 (1486)
382 COG4238 Murein lipoprotein [Ce 67.5 36 0.00078 27.7 7.4 48 281-328 25-72 (78)
383 KOG1318 Helix loop helix trans 67.4 14 0.0003 38.5 6.4 33 280-312 289-321 (411)
384 KOG0483 Transcription factor H 67.4 8 0.00017 36.4 4.3 40 291-330 108-147 (198)
385 PF10205 KLRAQ: Predicted coil 67.4 36 0.00077 29.1 7.8 42 285-326 30-71 (102)
386 PF15619 Lebercilin: Ciliary p 67.4 84 0.0018 29.4 11.0 26 299-324 122-147 (194)
387 PF05911 DUF869: Plant protein 67.3 26 0.00057 39.2 8.9 65 275-339 128-221 (769)
388 COG3879 Uncharacterized protei 67.3 24 0.00053 34.4 7.6 27 282-308 58-84 (247)
389 PF08912 Rho_Binding: Rho Bind 67.2 26 0.00055 28.0 6.4 33 286-318 1-33 (69)
390 PHA03161 hypothetical protein; 67.0 37 0.00079 30.9 8.2 41 267-309 42-82 (150)
391 PRK14872 rod shape-determining 67.0 16 0.00035 37.0 6.7 38 289-326 58-98 (337)
392 COG4372 Uncharacterized protei 66.9 81 0.0018 33.1 11.6 46 277-322 133-178 (499)
393 PF04949 Transcrip_act: Transc 66.9 67 0.0015 29.4 9.8 56 255-310 39-99 (159)
394 PRK10963 hypothetical protein; 66.9 17 0.00036 34.3 6.4 15 296-310 69-83 (223)
395 PF10146 zf-C4H2: Zinc finger- 66.8 29 0.00062 33.4 8.0 62 279-342 30-98 (230)
396 KOG0933 Structural maintenance 66.7 50 0.0011 38.2 10.8 38 292-329 819-856 (1174)
397 PF10779 XhlA: Haemolysin XhlA 66.7 42 0.00091 26.1 7.6 43 286-328 4-46 (71)
398 PF04340 DUF484: Protein of un 66.7 25 0.00053 32.8 7.5 21 287-307 46-66 (225)
399 PF06428 Sec2p: GDP/GTP exchan 66.6 25 0.00054 29.7 6.7 38 304-341 39-81 (100)
400 KOG4603 TBP-1 interacting prot 66.5 29 0.00062 32.5 7.6 59 282-342 87-147 (201)
401 COG1729 Uncharacterized protei 66.3 16 0.00035 35.8 6.3 50 282-332 57-106 (262)
402 TIGR01242 26Sp45 26S proteasom 66.2 13 0.00029 36.8 5.9 45 296-340 7-52 (364)
403 PRK10929 putative mechanosensi 66.2 49 0.0011 38.6 11.0 44 295-340 265-308 (1109)
404 KOG0964 Structural maintenance 66.1 51 0.0011 38.0 10.8 34 295-328 453-486 (1200)
405 COG4985 ABC-type phosphate tra 66.1 10 0.00023 36.9 4.9 44 300-343 219-269 (289)
406 KOG0239 Kinesin (KAR3 subfamil 66.1 37 0.00081 37.4 9.7 44 283-326 243-286 (670)
407 PF07412 Geminin: Geminin; In 66.0 27 0.00059 33.0 7.5 34 295-328 125-158 (200)
408 PF12329 TMF_DNA_bd: TATA elem 66.0 44 0.00096 26.5 7.7 40 287-326 32-71 (74)
409 KOG4010 Coiled-coil protein TP 65.8 19 0.00042 33.9 6.4 33 284-316 47-79 (208)
410 PRK10636 putative ABC transpor 65.7 30 0.00064 37.4 8.8 24 281-304 563-586 (638)
411 PF15290 Syntaphilin: Golgi-lo 65.6 13 0.00028 37.1 5.4 38 254-294 65-102 (305)
412 PRK13923 putative spore coat p 65.6 22 0.00047 32.9 6.6 26 286-311 116-141 (170)
413 TIGR03689 pup_AAA proteasome A 65.2 13 0.00029 39.5 6.0 48 284-338 4-52 (512)
414 PF03245 Phage_lysis: Bacterio 65.2 65 0.0014 27.9 9.3 48 280-327 13-60 (125)
415 TIGR01730 RND_mfp RND family e 65.2 37 0.0008 32.1 8.5 30 298-327 105-134 (322)
416 PRK14156 heat shock protein Gr 65.1 15 0.00033 33.9 5.6 53 290-342 36-88 (177)
417 PHA03155 hypothetical protein; 65.1 9.2 0.0002 33.2 3.9 29 304-332 10-38 (115)
418 PF04012 PspA_IM30: PspA/IM30 65.1 33 0.00072 31.6 8.0 46 287-332 97-142 (221)
419 KOG3433 Protein involved in me 65.1 70 0.0015 30.3 9.8 48 270-317 105-152 (203)
420 KOG2185 Predicted RNA-processi 65.1 25 0.00054 36.8 7.6 66 267-332 399-474 (486)
421 PF05622 HOOK: HOOK protein; 65.1 2.1 4.5E-05 46.7 0.0 57 253-310 296-354 (713)
422 PF01486 K-box: K-box region; 65.1 34 0.00073 28.1 7.2 35 271-305 61-99 (100)
423 KOG2507 Ubiquitin regulatory p 65.0 28 0.00061 36.7 8.0 37 296-332 244-280 (506)
424 PRK14161 heat shock protein Gr 65.0 29 0.00063 32.0 7.4 26 280-305 32-57 (178)
425 KOG0978 E3 ubiquitin ligase in 65.0 46 0.001 37.0 10.0 62 272-333 564-625 (698)
426 COG4985 ABC-type phosphate tra 64.8 18 0.00039 35.4 6.2 9 88-96 72-80 (289)
427 PF11382 DUF3186: Protein of u 64.7 20 0.00043 35.5 6.7 42 282-323 33-74 (308)
428 PF09789 DUF2353: Uncharacteri 64.6 50 0.0011 33.3 9.5 36 296-331 66-101 (319)
429 TIGR03689 pup_AAA proteasome A 64.5 16 0.00035 38.9 6.4 35 281-315 8-42 (512)
430 PRK13454 F0F1 ATP synthase sub 64.5 1.1E+02 0.0025 27.8 11.3 41 262-302 64-104 (181)
431 PHA03011 hypothetical protein; 64.5 40 0.00086 29.0 7.5 46 282-327 65-117 (120)
432 TIGR01843 type_I_hlyD type I s 64.3 1.1E+02 0.0023 30.3 11.8 11 290-300 212-222 (423)
433 KOG0837 Transcriptional activa 64.3 34 0.00073 33.8 8.0 32 297-328 229-260 (279)
434 TIGR00414 serS seryl-tRNA synt 64.2 42 0.0009 34.7 9.2 39 291-329 72-110 (418)
435 PRK05431 seryl-tRNA synthetase 64.2 33 0.00071 35.5 8.4 38 292-329 70-107 (425)
436 cd00632 Prefoldin_beta Prefold 64.1 35 0.00076 28.2 7.1 38 291-328 66-103 (105)
437 COG0576 GrpE Molecular chapero 64.0 20 0.00043 33.4 6.2 53 289-341 44-96 (193)
438 PF06103 DUF948: Bacterial pro 64.0 48 0.001 26.5 7.7 59 280-340 25-83 (90)
439 PF05812 Herpes_BLRF2: Herpesv 64.0 11 0.00024 32.9 4.2 28 303-330 4-31 (118)
440 PF15556 Zwint: ZW10 interacto 64.0 1E+02 0.0022 29.8 10.8 63 267-329 113-175 (252)
441 PF07851 TMPIT: TMPIT-like pro 63.9 33 0.00072 34.8 8.2 6 282-287 29-34 (330)
442 PF10168 Nup88: Nuclear pore c 63.8 82 0.0018 35.0 11.8 44 284-327 561-604 (717)
443 PHA02109 hypothetical protein 63.8 20 0.00044 33.6 6.1 37 279-315 191-227 (233)
444 TIGR01242 26Sp45 26S proteasom 63.6 16 0.00035 36.2 6.0 39 285-323 3-41 (364)
445 COG4420 Predicted membrane pro 63.4 39 0.00084 31.8 7.9 33 298-330 137-169 (191)
446 PLN02678 seryl-tRNA synthetase 63.3 34 0.00074 35.9 8.4 10 334-343 101-110 (448)
447 PF04999 FtsL: Cell division p 63.3 25 0.00053 28.5 6.0 28 295-322 42-69 (97)
448 KOG0946 ER-Golgi vesicle-tethe 63.2 21 0.00045 40.3 7.0 48 281-328 650-697 (970)
449 PF11853 DUF3373: Protein of u 63.1 4.8 0.0001 42.7 2.2 38 303-340 32-69 (489)
450 PF02994 Transposase_22: L1 tr 63.1 16 0.00034 37.2 5.8 56 284-339 140-195 (370)
451 KOG0995 Centromere-associated 63.0 34 0.00074 37.0 8.4 41 288-328 280-320 (581)
452 PRK13923 putative spore coat p 63.0 45 0.00098 30.9 8.2 35 288-322 111-145 (170)
453 PRK10361 DNA recombination pro 63.0 1.1E+02 0.0023 32.7 12.0 18 284-301 70-87 (475)
454 PF15358 TSKS: Testis-specific 63.0 52 0.0011 34.7 9.4 36 274-309 153-188 (558)
455 PF15070 GOLGA2L5: Putative go 62.9 44 0.00096 36.5 9.4 48 280-327 14-61 (617)
456 PF03961 DUF342: Protein of un 62.9 47 0.001 34.3 9.3 33 296-328 376-408 (451)
457 PF07058 Myosin_HC-like: Myosi 62.8 14 0.00029 37.3 5.1 47 290-338 2-48 (351)
458 PF14389 Lzipper-MIP1: Leucine 62.8 62 0.0013 26.5 8.2 26 304-329 56-81 (88)
459 PF14257 DUF4349: Domain of un 62.6 30 0.00066 32.9 7.4 57 281-337 132-197 (262)
460 PRK09343 prefoldin subunit bet 62.5 41 0.0009 28.9 7.5 41 298-340 74-114 (121)
461 PF03961 DUF342: Protein of un 62.4 37 0.00081 35.0 8.5 50 280-329 347-402 (451)
462 cd07666 BAR_SNX7 The Bin/Amphi 62.3 39 0.00084 32.8 8.0 50 277-329 159-208 (243)
463 PRK06835 DNA replication prote 62.3 68 0.0015 32.1 10.0 20 309-328 65-84 (329)
464 PF13942 Lipoprotein_20: YfhG 62.2 70 0.0015 29.9 9.2 50 270-321 114-163 (179)
465 PRK09973 putative outer membra 62.1 41 0.00088 27.9 7.0 57 282-338 25-81 (85)
466 PF07246 Phlebovirus_NSM: Phle 62.1 40 0.00086 33.3 8.1 70 259-328 173-242 (264)
467 KOG0612 Rho-associated, coiled 62.0 75 0.0016 37.5 11.2 77 253-329 470-549 (1317)
468 PF02344 Myc-LZ: Myc leucine z 62.0 25 0.00053 24.1 4.7 32 281-312 1-32 (32)
469 PF04899 MbeD_MobD: MbeD/MobD 61.9 53 0.0011 26.1 7.4 54 284-339 17-70 (70)
470 PRK14148 heat shock protein Gr 61.9 24 0.00052 33.2 6.3 49 279-327 31-79 (195)
471 PRK14150 heat shock protein Gr 61.7 24 0.00052 32.9 6.3 62 279-343 39-100 (193)
472 PF00261 Tropomyosin: Tropomyo 61.6 1.5E+02 0.0032 28.1 11.9 70 259-328 147-216 (237)
473 PF02388 FemAB: FemAB family; 61.5 37 0.00081 34.7 8.2 48 280-327 241-298 (406)
474 PTZ00266 NIMA-related protein 61.4 85 0.0018 36.4 11.7 74 256-329 441-516 (1021)
475 cd00890 Prefoldin Prefoldin is 61.3 31 0.00066 28.7 6.4 39 283-321 89-127 (129)
476 PF12017 Tnp_P_element: Transp 61.1 22 0.00048 34.2 6.1 50 291-340 14-66 (236)
477 PF06103 DUF948: Bacterial pro 61.1 83 0.0018 25.1 9.4 68 271-340 23-90 (90)
478 PRK09413 IS2 repressor TnpA; R 61.1 20 0.00043 30.4 5.2 32 295-326 71-102 (121)
479 cd00890 Prefoldin Prefoldin is 61.0 42 0.0009 27.9 7.2 45 286-330 85-129 (129)
480 PF15254 CCDC14: Coiled-coil d 61.0 63 0.0014 36.4 10.2 69 259-327 392-480 (861)
481 PF12128 DUF3584: Protein of u 60.8 77 0.0017 37.0 11.5 71 255-325 464-534 (1201)
482 KOG3433 Protein involved in me 60.8 94 0.002 29.4 9.9 73 249-323 72-144 (203)
483 PF07246 Phlebovirus_NSM: Phle 60.8 60 0.0013 32.1 9.0 72 255-328 151-228 (264)
484 PRK14143 heat shock protein Gr 60.8 23 0.0005 34.2 6.2 44 284-327 63-106 (238)
485 PF09325 Vps5: Vps5 C terminal 60.7 70 0.0015 29.2 9.2 69 259-327 127-195 (236)
486 KOG3584 cAMP response element 60.6 28 0.00062 34.9 6.8 54 270-323 287-340 (348)
487 PF10828 DUF2570: Protein of u 60.5 1E+02 0.0022 25.9 9.8 70 269-342 22-91 (110)
488 cd00632 Prefoldin_beta Prefold 60.5 40 0.00087 27.9 6.9 44 285-328 60-103 (105)
489 cd07429 Cby_like Chibby, a nuc 60.4 19 0.00042 30.9 5.0 37 281-317 72-108 (108)
490 PF10359 Fmp27_WPPW: RNA pol I 60.3 39 0.00085 35.4 8.3 69 282-352 164-241 (475)
491 PF12072 DUF3552: Domain of un 60.3 1.3E+02 0.0029 27.8 11.0 67 256-328 70-136 (201)
492 PF00261 Tropomyosin: Tropomyo 60.2 61 0.0013 30.7 8.9 58 272-329 104-161 (237)
493 PF08286 Spc24: Spc24 subunit 60.2 2.9 6.3E-05 35.6 -0.0 44 290-333 1-44 (118)
494 PF14916 CCDC92: Coiled-coil d 60.2 23 0.0005 27.5 4.9 41 286-329 1-41 (60)
495 KOG0243 Kinesin-like protein [ 60.1 42 0.00092 38.7 8.9 80 257-338 418-503 (1041)
496 PRK06569 F0F1 ATP synthase sub 60.1 1.4E+02 0.003 27.2 11.2 69 259-327 40-110 (155)
497 PF09727 CortBP2: Cortactin-bi 60.1 86 0.0019 29.6 9.6 66 259-327 108-173 (192)
498 PRK13182 racA polar chromosome 60.0 94 0.002 28.6 9.8 87 255-343 39-150 (175)
499 PF12777 MT: Microtubule-bindi 60.0 35 0.00076 34.0 7.6 63 265-327 219-281 (344)
500 PF13863 DUF4200: Domain of un 59.9 1E+02 0.0022 25.7 12.0 74 255-328 34-107 (126)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=9.7e-64 Score=453.30 Aligned_cols=165 Identities=59% Similarity=1.037 Sum_probs=153.4
Q ss_pred CCCCCCCCccCCCCCCCCC-CCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCCCCC
Q 018679 1 MGTGEENTSAKTAKTASST-QEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVP 78 (352)
Q Consensus 1 Mg~~e~~~~~k~~k~~s~~-~~~~~~~~~pdW~~~mQAYy~~~~~pp~y~~s~va~-~~phPYmWg~q~~m~pPyGtp~P 78 (352)
||++|++|++|.+|+++++ ++|+++++||||+ +|||||++| ++|+||+++||+ |+|||||||+||+||||||||||
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs-~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~p 78 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWS-AMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVP 78 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccH-hhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCC
Confidence 9999999999999988864 5799999999999 599999999 889999999995 99999999999999999999999
Q ss_pred CcccCCCCCcCCCCCCCC--------------CCCCCCCCCCC-CCCCCcccccccccccCCCCC-C----CCCCccccc
Q 018679 79 YQAIYPPGGVYAHPSMAT--------------TPTAAPTNTEP-EGKGPEAKDRASAKKSKGTPG-G----KAGEIVKAT 138 (352)
Q Consensus 79 Y~a~yp~GgvyaHP~mp~--------------~~~~~~~~~e~-~~k~~~~k~~~~~kk~Kg~~G-~----k~~~~gk~s 138 (352)
|+||||||||||||+||+ ++..+++++|+ ++|++++|||+++|||||+|| + ||++++|++
T Consensus 79 Y~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~ 158 (189)
T PF07777_consen 79 YPAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTS 158 (189)
T ss_pred CccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCccc
Confidence 999999999999999996 23357889999 599999999999999999994 3 889999999
Q ss_pred cCCCCCCCcccccCCCCCCCCCCCcCccc
Q 018679 139 SGSGNDGVSQSAESGSDGSSDASDENGNQ 167 (352)
Q Consensus 139 ~gs~~~~~s~S~esgsegSsdgsd~ns~~ 167 (352)
++++|++.|||+|||+||||||||+|+++
T Consensus 159 ~~s~n~~~Sqs~eSgsegSSdgSD~Nt~~ 187 (189)
T PF07777_consen 159 GSSANDGSSQSSESGSEGSSDGSDGNTNN 187 (189)
T ss_pred cCCCCCccCccccccccccccCcCccccC
Confidence 99999999999999999999999999875
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.49 E-value=2e-13 Score=104.26 Aligned_cols=64 Identities=50% Similarity=0.738 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
|.+.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999999999999999999999999999999999999874
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.40 E-value=1.8e-12 Score=99.14 Aligned_cols=61 Identities=54% Similarity=0.746 Sum_probs=56.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
.|+.||+++||+||++||.||++++.+|+.++..|+.+|..|+.++..|..++..|+.++.
T Consensus 4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999888888888877763
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.29 E-value=2.8e-11 Score=114.17 Aligned_cols=81 Identities=35% Similarity=0.450 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018679 257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 257 rE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
+|.|-+|||++||.+|+-+|.|||+++++|+.++..|..||+.|+.+.+.|+..++.|..+|.+|..+|+.+. +.|.+
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~ 143 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHh
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999887 55665
Q ss_pred hhh
Q 018679 337 LEQ 339 (352)
Q Consensus 337 L~~ 339 (352)
|.+
T Consensus 144 ~~~ 146 (292)
T KOG4005|consen 144 LKQ 146 (292)
T ss_pred hHH
Confidence 554
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.23 E-value=2.4e-11 Score=117.25 Aligned_cols=61 Identities=36% Similarity=0.432 Sum_probs=56.2
Q ss_pred chhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 251 QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 251 ~~~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
.-..||.-+||+-|.++|||+||.||+|||+|+.+||.||..||.+|..|-+||..|++-+
T Consensus 282 ~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 282 TQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred CccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 3457888999999999999999999999999999999999999999999999998887654
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.17 E-value=8.9e-11 Score=120.71 Aligned_cols=71 Identities=39% Similarity=0.468 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
..|.+-.||+.|+++|||+|..||+|||+|++.||.++..|.+||+.|+.|...|++++..|..||..|+-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 46888899999999999999999999999999999999999999999999999999999999999998873
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.12 E-value=8.8e-11 Score=119.28 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-+|+.+||.|||++|++||+.||+|||+|++.||.+|....+||++|+++++.|+.++..|.++.+.|...+.....
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc
Confidence 48999999999999999999999999999999999999999999999999988877777777777777666555443
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.11 E-value=4.6e-10 Score=83.33 Aligned_cols=50 Identities=50% Similarity=0.747 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
++.||+ +||+||++||.||++++++|+.+|..|+.+|..|+.+|..|+.+
T Consensus 5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777 99999999999999999999999999999999999999888754
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.63 E-value=1.5e-07 Score=90.23 Aligned_cols=68 Identities=31% Similarity=0.477 Sum_probs=59.2
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 249 ~~~~~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
....++++..+|-+|.+++||++|++||.||.++|.+||.+|..|..+|..|-.++..|++...+++.
T Consensus 195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34556788888889999999999999999999999999999999999999999999887766655543
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.42 E-value=3.8e-09 Score=86.42 Aligned_cols=68 Identities=32% Similarity=0.485 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.+..++|..||+.+||.+|+.||.||.+++++|+.++..|+.+...|..++..|..++..|...+..|
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667799999999999999999999999999999999888888888888877777666665555544
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.31 E-value=2.4e-06 Score=83.13 Aligned_cols=56 Identities=32% Similarity=0.480 Sum_probs=48.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
..|.+++|+.+|-|+|.||+++.|.|..+++.|+.+|++|+.++..|.+|+..|+.
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445778888999999999999999999999999999999999888777776654
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.02 E-value=1.4e-05 Score=77.16 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=48.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
...|+.+|-+++||||.+++...+++..||..|+.||+.|+.+|+.|+.++..|+.-..
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455679999999999999999999999999999999999999776666665554433
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.64 E-value=0.00049 Score=60.29 Aligned_cols=67 Identities=27% Similarity=0.436 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 257 rE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-.+|..||-++||=-|.-||-|+-..-++|| .++..|.++|+.|.+++..|..|...|+.++.+|..
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE-------~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELE-------KEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777789999999999999987666654 566667777777777777888888888888888764
No 14
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.61 E-value=0.0003 Score=65.14 Aligned_cols=122 Identities=22% Similarity=0.349 Sum_probs=68.4
Q ss_pred chhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCCCcccCCCCCcCCCCCCCC--CC--CC----
Q 018679 30 DWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLM-PPYGTPVPYQAIYPPGGVYAHPSMAT--TP--TA---- 100 (352)
Q Consensus 30 dW~~~mQAYy~~~~~pp~y~~s~va~~~phPYmWg~q~~m~-pPyGtp~PY~a~yp~GgvyaHP~mp~--~~--~~---- 100 (352)
|=. ....|.- =...=.||.+. ++||||- ..|+ .| +||||+ ||. +||+||+ +| .+
T Consensus 22 ~~~-~~~~ypD-Ws~mQAYyg~~----~~p~~f~---s~va~sp--~phPYM----WG~--~q~mmPPYGtP~pY~A~Yp 84 (189)
T PF07777_consen 22 DQP-TPHVYPD-WSAMQAYYGPG----APPPYFN---SAVASSP--QPHPYM----WGP--QQPMMPPYGTPVPYPAMYP 84 (189)
T ss_pred CCC-CCccCCc-cHhhhhccCCC----CCCcccC---cccCCCC--CCCCcc----cCC--CccccCCCCCCCCCccccC
Confidence 444 3666643 22345688873 7789987 3343 34 789999 999 9999986 22 11
Q ss_pred -----CCCC---------------CCCCCCCCcccccccccccCCCCCCCCCCccccccCCCC-C-CCcccccCCCCCCC
Q 018679 101 -----APTN---------------TEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGN-D-GVSQSAESGSDGSS 158 (352)
Q Consensus 101 -----~~~~---------------~e~~~k~~~~k~~~~~kk~Kg~~G~k~~~~gk~s~gs~~-~-~~s~S~esgsegSs 158 (352)
+..+ +++.+....+.|-.+ .|.+++ |+....|+++|... - ..-+.+++++....
T Consensus 85 hGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p---~Kss~~-kd~~~~KksKg~~g~~a~s~~n~~~gk~~~~ 160 (189)
T PF07777_consen 85 HGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDP---GKSSGN-KDKGSMKKSKGFDGGLAMSIKNGESGKTSGS 160 (189)
T ss_pred CCccccCCCCCcccccCCCcccccccccCCCCccccccc---ccCcCc-cccccccccccccccceeeccCCccCccccC
Confidence 1111 122222222222111 133333 55555677777653 1 23356677777777
Q ss_pred CCCCcCcccccccc
Q 018679 159 DASDENGNQQEFAR 172 (352)
Q Consensus 159 dgsd~ns~~~~s~~ 172 (352)
.++|+.++..++++
T Consensus 161 s~n~~~Sqs~eSgs 174 (189)
T PF07777_consen 161 SANDGSSQSSESGS 174 (189)
T ss_pred CCCCccCccccccc
Confidence 77888887666665
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.41 E-value=0.00027 Score=74.87 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=58.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCc
Q 018679 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED-LSRLCGP 331 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~-L~~l~g~ 331 (352)
|-.||+=+||.||++||+||..-|..||..|+.|+.|-++|.+|-..+...+..++.+...|-.+ ++.|+.+
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~ 562 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDE 562 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44578889999999999999999999999999999999998888877777777777777777543 3444433
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.77 E-value=0.0068 Score=51.52 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..+.+|++++..|-.+...|+.++..|-+|+..|+.||..|+++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999864
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.54 E-value=0.012 Score=50.35 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+.+|++++..|..+...|+..+..|-+|+..|+.||..|+++|..+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999999999999873
No 18
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.38 E-value=0.023 Score=44.47 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
+.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|+.|- ..+..|++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI--~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI--TRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhcc
Confidence 4567777777888888888888888888888888888888888888775 55555554
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.37 E-value=0.024 Score=45.05 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
++.|+.+|..+-..+..|+.++..|+++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333333333
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.017 Score=46.05 Aligned_cols=56 Identities=29% Similarity=0.354 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
+.-|+-+|+.|+.+|..|..++..++...+.|+.||.+|+++-.... +.++.|.-.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ--erlrsLLGk 75 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ--ERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 44566778888888888888888777777888888887777665554 555555443
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.37 E-value=0.048 Score=51.17 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.++.+++++..+..|+++|++|+.++..++.+.+.|+.+|..|+..+.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777778888888888888888888888888877776554
No 22
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.32 E-value=0.012 Score=53.39 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018679 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
....|+.||..|+.++..|+++++.|+.||..|..++..+. ++-..|..+++
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~--eDY~~L~~Im~ 149 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE--EDYQTLIDIMD 149 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 46667778888888888888888888888888888777776 55566655554
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.10 E-value=0.034 Score=45.18 Aligned_cols=48 Identities=31% Similarity=0.419 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-++|.+++..|+.....|..+++.++++|+.|+.||.-|..-|..|..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999999999999853
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.08 E-value=0.03 Score=45.34 Aligned_cols=58 Identities=29% Similarity=0.343 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.|.-|+.+|+.|+.+|..|..++..++.....|+.||..|+++..... ++|+.|.-.+
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LLGkm 76 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence 455567778888888888888877766666667777777777666665 5666555443
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.90 E-value=0.058 Score=42.87 Aligned_cols=47 Identities=36% Similarity=0.464 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.-|+.+++.|+.+|..|..+...|+.++.+|+.|-..+..+|..|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555444
No 26
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.88 E-value=0.082 Score=51.00 Aligned_cols=89 Identities=25% Similarity=0.296 Sum_probs=64.5
Q ss_pred cchhhhHHHHHHH-HHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 250 DQWIQDERELKRQ-KRKQ-----SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 250 ~~~~~DErE~KR~-RRk~-----~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++...+|+-.||+ |-+. +.|.-||- ..=..++.+|.++-+.|+.||+.|+.....|-.+..+|..+...|++
T Consensus 62 ~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm--~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 62 DHLSWEEKVQRRKLKNRVAAQTARDRKKARM--EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445676665554 3333 23333333 22235577999999999999999999999999999999999999999
Q ss_pred HHHHhcCcchhhchhhc
Q 018679 324 DLSRLCGPEAVANLEQS 340 (352)
Q Consensus 324 ~L~~l~g~~~~~~L~~~ 340 (352)
+|..+......-++-..
T Consensus 140 ~l~~~~~~~~~~~~v~e 156 (292)
T KOG4005|consen 140 ELAELKQQQQHNTRVIE 156 (292)
T ss_pred HHHhhHHHHHHhhHHHh
Confidence 99998766665555443
No 27
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.065 Score=42.75 Aligned_cols=53 Identities=36% Similarity=0.453 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
=|-++++|.++-..|..|.+.++...+.|.+++++|+.|...+.++|+.|-|.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999998764
No 28
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.63 E-value=0.055 Score=56.51 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...++||++++.|+.|.+.|.++...++++++.|+.||.+|+++++.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999999999996543
No 29
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.51 E-value=0.038 Score=40.22 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|+.+...|+...+.|+.+++.|..||..|++++..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666666654
No 30
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=95.47 E-value=0.3 Score=40.21 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-+.-++|..+++.+=|++=..|.-+.....+|+.+++.|......|-.+|.....+|..|+.-|..+..+|....
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355578888888888888888888888889999999999999999999999999999999999999999998765
No 31
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.45 E-value=0.19 Score=46.14 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=55.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+.++....+..-+.-......++.+++.-++.|+.|...|.-++..|.+++..|+.||..|-+++.+..+.+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~e 188 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQE 188 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444545556667788888889999999999999999999999999999999999988776543
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=95.27 E-value=0.095 Score=40.96 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++++||.++..++.-+++|-..|...+.++..|+.+...|.++|..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999999986
No 33
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.21 E-value=0.095 Score=41.09 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|+.+|+.|-..+..|+.+...|+.+...+..|+..|.++...-+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987765
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.10 E-value=0.3 Score=45.95 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
-.++..+|+++++.+..+..+|..++..|++++..++.|+..|..++..+....
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778888888888888888999999999999999999999999988887433
No 35
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.96 E-value=0.13 Score=41.75 Aligned_cols=51 Identities=33% Similarity=0.462 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|-++++|..+-..|..++..++..-..|.+++++|+.|...+.++|..|-|
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888998888999999888888888888888888888888888888765
No 36
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.90 E-value=0.11 Score=44.51 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..+..|++++-.|-++...|++.+..|-+|+..|+.||..|+++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999988
No 37
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.84 E-value=0.16 Score=48.89 Aligned_cols=50 Identities=34% Similarity=0.455 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..++++..+-+.|..++..|..+++.+++++..|+.||.+|.+.+..+.|
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 33455555555566666666666667777777888888888888888764
No 38
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=94.74 E-value=0.26 Score=43.58 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 279 KQAECEELQARVETLSNE-------------NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~E-------------N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-++++-.|.++...|+.. -.+|..+-..|.++++.|..||.++.-++-.+.
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555442 234555666666666666666666666666654
No 39
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=94.62 E-value=0.0014 Score=66.63 Aligned_cols=67 Identities=33% Similarity=0.410 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 253 IQDERELKRQKRKQSNRESARR---SRLRKQAECEELQARVETLS-NENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRESARr---SR~RKq~~~eeLe~kv~~Le-~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
+..|.+.||.+|+++|+.+|.+ ||.|++....+|+.+|+.|+ .++..|..++..|+++.+.|+.+..
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~ 217 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELN 217 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHh
Confidence 4567778899999999999999 99999999999999999999 9999988888777777766665543
No 40
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.53 E-value=0.25 Score=39.08 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++.+||.++..++.-+..|-..|...+.++..|+.+.+.|..+|..+.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36789999999999999999999999999999999999999999998875
No 41
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=94.53 E-value=0.055 Score=49.43 Aligned_cols=48 Identities=27% Similarity=0.378 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 334 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~ 334 (352)
|++||.++.+--++|.-|..|| .|.+.|+.++++||.+|.+|..+-.|
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V 49 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIV 49 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888877 34455555555555555555543333
No 42
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.52 E-value=0.15 Score=37.14 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+||+..+.|+.....|+.+...|.++.+.|++|...|+..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 477888888888888888888888888999999999888774
No 43
>PRK02119 hypothetical protein; Provisional
Probab=94.50 E-value=0.26 Score=39.13 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++.+||.++..++.-...|-..|...++++..|+.+...|..+|..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788899999998889999999999999999999999999998888875
No 44
>PRK00736 hypothetical protein; Provisional
Probab=94.45 E-value=0.28 Score=38.39 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++||.++..++.-+..|-..|...++++..|+.+...|.++|..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999999999999999999999999998875
No 45
>PRK00295 hypothetical protein; Provisional
Probab=94.45 E-value=0.29 Score=38.33 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++||.++..++.-+..|-..|...++++..|+.+...|..+|+.+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999999999875
No 46
>PRK04325 hypothetical protein; Provisional
Probab=94.42 E-value=0.3 Score=38.89 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++||.++..++.-++.|-..|...+.++..|+.+.+.|..+|+.+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999998875
No 47
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.40 E-value=0.23 Score=48.54 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEE-----------CEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e-----------~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
.++.+|+.+...|+.+|+.|+-++..++++ ...|+.+|..+++.+..|+ ..|+.|+|-+|.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~--kyiReLEQaNDd 123 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLR--KYIRELEQANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccH
Confidence 345556666666666777777776666654 3478888999999999888 899999998876
No 48
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.37 E-value=0.59 Score=40.99 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=45.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+..|-...||..-....++...++.|+..++.|+.++..+..++..++.+...|..++..+...+....
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666677777777777777777777777777776666666666666655555555443
No 49
>PRK04406 hypothetical protein; Provisional
Probab=94.26 E-value=0.33 Score=38.84 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++.+||.++..++.-+..|-..|...++++..|+.+.+.|..+|..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778888888888888888888888888888888888888888888765
No 50
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.11 E-value=0.86 Score=40.64 Aligned_cols=66 Identities=32% Similarity=0.329 Sum_probs=52.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+.|++.+-+--.-++++|+.|+.++..+..+...|..+|..|+.+...|..+....+.++..|.
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778777788888888888888888888888888888888888877777777777777765
No 51
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.05 E-value=0.11 Score=50.67 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018679 289 RVETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRL 328 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~----~L~~EN~~Lk~~L~~l 328 (352)
.+..|++||.+|++|+..|+.+.+ .|+.||++|++.|.--
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 455677788888877766644433 4899999999877654
No 52
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.97 E-value=0.33 Score=46.15 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+.+.++++.+.+++.++.++..|+++.+.++.|++.|..|++.|++++..
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 344556666777777888888889999999999999999999999988864
No 53
>PRK11637 AmiB activator; Provisional
Probab=93.80 E-value=0.81 Score=46.67 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..-+.+++.|+.++..++.+...+..+|..++.++..|..+...|+.+|..+.
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666666666555543
No 54
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.63 E-value=0.3 Score=41.52 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
+|=.++..|+.....|..++..|+.....|..||.+|+-+...|+ +.|..+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 466778889999999999999999999999999999998888887 66666655
No 55
>PRK00846 hypothetical protein; Provisional
Probab=93.50 E-value=0.54 Score=38.01 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++++||.++...+.-...|-..|...+..+..|+.+...|.++|+.+.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888888888888888888888999999899988888886
No 56
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=93.38 E-value=0.31 Score=47.03 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+||+|+..+..++..|+.|++.|+.+|..|-++++=|.
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555666778888888888877664
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.28 E-value=0.86 Score=48.64 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.++......+....-+.+++.|+..+...+.++..|..+...|....+.|..|+..|+.++.++
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555666665555555555555555555555555555555555444443
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.22 E-value=1.2 Score=42.06 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
...+.++++++.++..|+.+.+.++.++..+++++..++.++...+..|.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555554444
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.16 E-value=0.43 Score=52.23 Aligned_cols=41 Identities=29% Similarity=0.410 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
|.+.+++.+|+.|...|+.+|...++++..|+.|...|+..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888888888888877666654
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=0.69 Score=51.18 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.6
Q ss_pred hhhhcCCCCCCC
Q 018679 35 MQAFYGAGATPP 46 (352)
Q Consensus 35 mQAYy~~~~~pp 46 (352)
+|.|-=|.+.||
T Consensus 82 LqG~~lP~~LPP 93 (1118)
T KOG1029|consen 82 LQGIQLPPVLPP 93 (1118)
T ss_pred hcCCcCCCCCCh
Confidence 355544444444
No 61
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.99 E-value=0.65 Score=44.46 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 018679 288 ARVETLSNENRNLRDELQRLSEECE---KLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~---~L~~EN~~Lk~~L~~l 328 (352)
.....|.+||..|++|+..|+.+.. .|+.||.+|++.|.-.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3445555666666666665555544 7889999999877643
No 62
>smart00338 BRLZ basic region leucin zipper.
Probab=92.88 E-value=0.96 Score=34.36 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777888887777777777777777777653
No 63
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.69 E-value=0.51 Score=45.46 Aligned_cols=45 Identities=33% Similarity=0.506 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++|..+++.++.|+..|+.+++.|+.+++.+..+..+|..++..|
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444333333
No 64
>PRK11637 AmiB activator; Provisional
Probab=92.68 E-value=1.3 Score=45.21 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
...+..++.++..++.+...+..++..|+.++..++.+...++..|
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555554444444433
No 65
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=92.64 E-value=0.52 Score=45.81 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+-|..+|+--..-+.++.+|+.+.+.|+.++.+|++++..|+..+..
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445555566666666666666666666555554433
No 66
>PRK04406 hypothetical protein; Provisional
Probab=92.62 E-value=1 Score=35.97 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
++.|+.++..|+.....+..-|+.|.+.......+...|+.+|..|. +.+..+...
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~~ 61 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence 45799999999999999999999999999999999999999999996 667666543
No 67
>PRK02119 hypothetical protein; Provisional
Probab=92.26 E-value=1.1 Score=35.66 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
++..|+.++..|+.....+...|+.|.........+...|+.+|..|. +.+..+...
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence 578899999999999999999999999999999999999999999997 667776543
No 68
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=92.19 E-value=0.36 Score=37.21 Aligned_cols=26 Identities=46% Similarity=0.759 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
++.+|+.+++.|+.+|..|+.++..|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444333
No 69
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=0.51 Score=50.80 Aligned_cols=46 Identities=35% Similarity=0.526 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.++..|+.+|+.|+.||..|+.++.+|+.+++.|+.+..+++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777766654
No 70
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=92.09 E-value=0.57 Score=36.94 Aligned_cols=43 Identities=28% Similarity=0.474 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
....+..++..++++.+.|+.||.+|+.++..|..++.|..+-
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~A 67 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4445555666666666666666666666666666666655443
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.96 E-value=2.1 Score=41.31 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=22.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
+.+.-.+.+++.=.-++.++++|+.+|..++.+...++.++..
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455545555555555555555555555555554433
No 72
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.94 E-value=2 Score=32.63 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..++.|+.++..|..++..|..++..|..++..|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555555555544
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.89 E-value=2.8 Score=39.86 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+...-..+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777777777777776666665544443
No 74
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.89 E-value=0.82 Score=42.26 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 018679 311 CEKLTSENNSIKEDLS 326 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~ 326 (352)
++.|+.++..|+.+|.
T Consensus 112 l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 112 LEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 75
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.87 E-value=0.92 Score=35.77 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 281 AECEELQARVETLSNENRNLRDE-------LQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~e-------l~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|.+++...+.+|..|+.+ |...-.++..|+.||..|+.+|..+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554 4455555555555555555555443
No 76
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=91.69 E-value=0.8 Score=39.31 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
+|=.++..|+.....|..++..|+.....|..||.+|+-+-..|+ +.|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 455677778888888888888888888888888888887777776 555555
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.62 E-value=1.4 Score=42.49 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+|..+++.|+.|+..||-+++.+..++++|....+.|-.+|..+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888888888877777777776654
No 78
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.61 E-value=0.25 Score=45.69 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+|.+|++++++ +..++++.+|+.+++.|+.+.++|++.+..|-
T Consensus 91 ~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 91 WRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666663 55567778888888777776555555555544
No 79
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.52 E-value=0.7 Score=41.34 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 279 KQAECEELQARVETLSNENRNLRDEL--QRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el--~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-++++.+|+.++..|+.|...|...+ ..|..++..|+.|+..|.++|..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777776654 67778888888888888888888875
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=1.6 Score=48.57 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 018679 308 SEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 308 ~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+...|..|...|..+|.+|.
T Consensus 436 nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 81
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.50 E-value=0.59 Score=41.81 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEEC--EKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~--~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+|+.++..|+.++..|+.++..|.... .+|..+...|+.+|..|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 334444444444444443
No 82
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=91.49 E-value=2.4 Score=39.84 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-+.||....+ ...++..|+.+-..|..++-.+...|..|+.|..+|+.+...+..
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445554444 678888999999999999999999999999999999998887753
No 83
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.47 E-value=0.79 Score=38.70 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
.+.++++++++++++.|+++|..|+.++..|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3445566677777777777777777777766653
No 84
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.45 E-value=0.67 Score=48.58 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+.+..+|.++.+.|+++.++|......|..+|..+
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555566666666666666666666665443
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.33 E-value=1.7 Score=45.13 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=58.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+|++-.+++=+...+.....+.+...|+.++..|+.++..|..+|......+..++..+..+...|..|..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455555555566666667778888999999999999999999998888888888888888888888887655
No 86
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.31 E-value=3.5 Score=39.14 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..+|..+++.|+.|.+.|+..+..|+.....++.+..+|..++..+.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555556666666665555554
No 87
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.28 E-value=3.3 Score=38.56 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 268 NRESARRSRLRKQAECEELQARVE 291 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~ 291 (352)
+..+-+..+...+.+...|+.++.
T Consensus 97 kLL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 97 KLLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 88
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=91.23 E-value=0.83 Score=48.66 Aligned_cols=70 Identities=27% Similarity=0.267 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
..-+.+.|-.+|.| | . =|-. |........-++-...|..+|..|..||++|+.||..||.+|..|..+.
T Consensus 271 p~~~~d~kv~krqQ--R----m---IKNR--esA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 271 PNVGSDIKVLKRQQ--R----M---IKNR--ESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred CCCccCHHHHHHHH--H----H---HhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34567777666654 2 2 2222 2223333334455677889999999999999999999999999887644
Q ss_pred h
Q 018679 333 A 333 (352)
Q Consensus 333 ~ 333 (352)
.
T Consensus 340 ~ 340 (655)
T KOG4343|consen 340 Q 340 (655)
T ss_pred c
Confidence 3
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.11 E-value=1.1 Score=39.64 Aligned_cols=44 Identities=32% Similarity=0.527 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.|+.++..|+.++..+-.+|..|+..+..|..+...|..+|.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 90
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.04 E-value=4.8 Score=35.22 Aligned_cols=51 Identities=25% Similarity=0.403 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|-+..++.|+.+++.++.++..+..+...|+.++..+...+..+++++.++
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555554444
No 91
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.96 E-value=2 Score=34.05 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.+|+.++..|+.....+..-|+.|.+...+...+...|..+|+.|. +.+.++....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~ 59 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSN 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 4689999999999999999999999999999999999999999997 6777776543
No 92
>PF15294 Leu_zip: Leucine zipper
Probab=90.87 E-value=0.7 Score=45.49 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|..++..|+.||..|+.++..++.+|.....|...|..+|..++-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999874
No 93
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.80 E-value=2.2 Score=44.44 Aligned_cols=48 Identities=35% Similarity=0.439 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++.|+.++..|+.||..||..+..|+..|++|..+..++..+|..++
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 456677788888888888888888888888888888877777777665
No 94
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.74 E-value=4.4 Score=37.82 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.-+++....++...+-+.-+.+-..-+.++..++.++..|+-|++.|..++..|.++...|..
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777666667777777777777777777777777777777776663
No 95
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=90.69 E-value=1.1 Score=38.21 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
|-.+|-.|+.-...|.+++..+++|+.+|+.||.-|-+-|+.|...
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 3445666666667788888888889999999999999888888643
No 96
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.68 E-value=1.4 Score=38.34 Aligned_cols=66 Identities=29% Similarity=0.411 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR---DELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr---~el~~L~~e~~~L~~EN~~L 321 (352)
|+-.-..||+.....+.+.--.|=.+..+.|.+++-.|..+|..++ .++..|+.++..|......+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666655555555555666666666666665443 23444444444444444443
No 97
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.63 E-value=1.6 Score=34.12 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
.|+.++..|+.....+...|+.|.........+...|+.+|..|. +.|.++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 378899999999999999999999999999999999999999988 6777765
No 98
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.44 E-value=1.3 Score=37.28 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 282 ECEELQARVETLSNENRNL--RDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~L--r~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.+++.|+..|+.+...| +..+..|+-++..|+-+...|.++|+.+
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444566777777777776 7777777777777777777777777666
No 99
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.42 E-value=1.5 Score=43.60 Aligned_cols=73 Identities=29% Similarity=0.319 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 256 ERELKRQKRKQSNRE-----SARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 256 ErE~KR~RRk~~NRE-----SARrSR~RK-q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|-|.|-.+=++.|.. ++-.+..-- +..|++|++.+.+|+.++.....+++.+++.+..|+.|...|+++|...
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666532 333333332 4567777777777777777777778888888888889999998888765
No 100
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=90.41 E-value=0.049 Score=55.44 Aligned_cols=63 Identities=30% Similarity=0.362 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
..|..+++ .|=.++||.+|-+||.||+..+..|+.+.+.+..+|..|. ..+++.|..++..+.
T Consensus 279 ~~~p~~~~-~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 279 DEDPDERR-RRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS 341 (395)
T ss_pred CCCchhhh-hhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence 33444333 4447899999999999999999999999999999999988 223344555555543
No 101
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=90.37 E-value=0.29 Score=37.65 Aligned_cols=42 Identities=31% Similarity=0.543 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
+.|.+.|+.+|..|..++..|+.||..||.. ..++.+..|..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~----~~pe~l~q~~~ 54 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQN----ASPEQLAQLQS 54 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CSSSSSTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHh
Confidence 3456677778888888888888888888763 44555555443
No 102
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.33 E-value=1.1 Score=43.38 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.|=++++.|||+++..+..++..|+.|++.|+..+.+|-...+-|..-
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455689999999999999999999999999999998887766543
No 103
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=90.29 E-value=1.3 Score=47.63 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++.+||.+.+.|+.|.+++..++++|++.+.+-..|..+|+.++++-+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 4677778888888888888888888888877777777777777766554
No 104
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=90.23 E-value=1.2 Score=37.55 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
...+|+++++.++++|..|+.+...|+.+++.|+..-.-|.+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 3456666666666666666666666666666666533333333
No 105
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.14 E-value=2.5 Score=38.34 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 292 TLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.++.++..|..++..|+.++..|.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.07 E-value=2.9 Score=41.46 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++.|..++..+..++..++.++..|+.++..|..+...+.+++.++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555544444444443
No 107
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.05 E-value=2.4 Score=33.94 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+++.+||.++..-+.-..+|...|...+..++++....+.|.+++.++..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357888888888888888889999999999999999999999999988864
No 108
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=89.82 E-value=0.34 Score=35.30 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.|..|..++..|..++..|..||..|++++
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 345555555666666666666666666554
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.80 E-value=3 Score=40.27 Aligned_cols=53 Identities=34% Similarity=0.463 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...+.++..|..++..++.+...|..+|..|..+.+.|..+...|+.++.++.
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777777777777777777777777777665
No 110
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=89.78 E-value=0.97 Score=42.59 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+.|..+|+.|+.|+..|+.++..|++ |..+...|.+-|..|.+
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444322 33333444445555543
No 111
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.77 E-value=4 Score=43.77 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+...+.+.+.|+.++..|....+.|..+...|..++..++.+|..|
T Consensus 178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444333
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.75 E-value=33 Score=37.96 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=30.2
Q ss_pred hhHHHHHHHHH-HHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 254 QDERELKRQKR-KQSNRESARRSRLRKQAE---CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 254 ~DErE~KR~RR-k~~NRESARrSR~RKq~~---~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
--|+|+||.|. ++.-|..=+..|..=..+ -..|..++..|+.+|+.|+.++..|.+..+.=+.....|.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666664 244444444433330000 0123344555555555555555544444443333333333
No 113
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.58 E-value=5.2 Score=34.65 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
-..|..++..++..|..|..+|.-|-.+|..+
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455566666666666666666666666554
No 114
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.48 E-value=1.3 Score=43.29 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 018679 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLC 329 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~~L~~l~ 329 (352)
=.+.+..++++..++..++.++.++..++..|+.++..|+ .++..|+.+++.++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666666666666555443 34444455555443
No 115
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.47 E-value=6.9 Score=35.22 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.-+.+.+++++.++..++.+..+...|++++..++.+++.++.+..++.+.+..+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQL 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555444444444444444444444444333
No 116
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.43 E-value=3.7 Score=35.68 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 018679 316 SENNSIKEDLSR 327 (352)
Q Consensus 316 ~EN~~Lk~~L~~ 327 (352)
.++.+|+..|.+
T Consensus 96 E~veEL~~Dv~D 107 (120)
T PF12325_consen 96 EEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 117
>PRK00846 hypothetical protein; Provisional
Probab=89.42 E-value=2.6 Score=34.16 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
-+.|+.++..|+........-|+.|.+.......+...|+.+|+.|. +.+.++..+..+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~ 66 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFA 66 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCC
Confidence 36789999999999999999999999999999999999999999998 778887755543
No 118
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=89.24 E-value=2.1 Score=35.41 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
|+.|-...+.+|..|+.+|..|..+++.|+.++...+.|-..|-
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666666666666666666565555555543
No 119
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.19 E-value=6.2 Score=37.21 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
.+++.++..|+.+++.++.++..++.++..+++.
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333333
No 120
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=89.14 E-value=3.8 Score=31.35 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+++|...|..|..+...|..++..|+.+......|-.+-.++|-.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777777777777777666666666666665555555543
No 121
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.07 E-value=1.7 Score=33.12 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
+++||.++..|+.....|+++++.|++.++.|..-.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555555555555555544444444433
No 122
>PRK04325 hypothetical protein; Provisional
Probab=89.01 E-value=2.2 Score=33.92 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
...|+.++..|+.....+...|+.|...+.....+...|+.+|+.|. +.+.++..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 58 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY--QQMRDANP 58 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 46788999999999999999999999999999999999999999997 56666653
No 123
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=88.98 E-value=4.5 Score=37.00 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+.++.+|+.+++.|+.||..|..++..+++++..|.
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554443
No 124
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=88.89 E-value=1.7 Score=37.36 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
+|=.+|..|+.....|..++..|++....|..||..|+-+...|+ +++.+
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR--~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR--ERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHhCC
Confidence 455688999999999999999999999999999999999999988 66665
No 125
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=88.73 E-value=5.6 Score=29.29 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 294 SNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
......|..++..|..++..|..++..|+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444443
No 126
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.67 E-value=5.3 Score=37.16 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+....+.+|+.++..|+.+...|..+.+....++.+|+.+...|.++|...
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555555555544
No 127
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.64 E-value=3.2 Score=32.75 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
..|+.+++.|..++......+..|..+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~E 34 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRE 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.51 E-value=1.2 Score=44.43 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+...|..+|..-.+++.....|..+|..+|.++.
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666666664
No 129
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.49 E-value=2.1 Score=34.81 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|..+...|+..|..|...++.++.||..|+.+=+-|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 130
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.44 E-value=2.2 Score=36.59 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
.+.-.|..+-|+..=..+.++|+..+..|++++..+.+++..|+.++..++...
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555666666666666666666655555555554433
No 131
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=88.40 E-value=9.7 Score=31.46 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=60.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018679 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
-+....++..+..=..|...+..|++++..|..|...-.++.-.+.+....|..|+..|+..+.+-. +.+..|.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~--~~i~~L~ 79 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS--ELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 3456667777777788999999999999999999999999999999999999999999988877654 4444443
No 132
>PRK09039 hypothetical protein; Validated
Probab=88.21 E-value=5.2 Score=40.20 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..|+++.+.|+.++..|+.++..++.+...++.+|
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 133
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.17 E-value=3.1 Score=39.06 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..|..++..|+.||..|..+.+.|+..+..|-.++..|+.+|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 455666666666666666666666666666666666666665
No 134
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=88.17 E-value=1.7 Score=35.27 Aligned_cols=48 Identities=25% Similarity=0.471 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.+..+...+..+++.++.+..+|..||..|+-++..+..++.+..+-.
T Consensus 32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~ 79 (97)
T PF04999_consen 32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAR 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 345566777778888888888888999999988888888777765544
No 135
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=88.13 E-value=2.6 Score=34.79 Aligned_cols=37 Identities=38% Similarity=0.614 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 018679 293 LSNENRNLRDELQRLSEE------CEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e------~~~L~~EN~~Lk~~L~~l~ 329 (352)
|..+|..|+.+|..|+.+ ......||.+|++++..++
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555542 3345566666666665553
No 136
>PRK00295 hypothetical protein; Provisional
Probab=88.10 E-value=3.2 Score=32.52 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
|+.++..|+.....+...|+.|.....+...+...|+.+|..|. +.+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 67889999999999999999999999999999999999999987 6677665
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.02 E-value=8.8 Score=38.14 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 018679 315 TSENNSIKED 324 (352)
Q Consensus 315 ~~EN~~Lk~~ 324 (352)
..|...|..+
T Consensus 112 ~~e~~sl~~q 121 (314)
T PF04111_consen 112 QEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 138
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=87.96 E-value=1.8 Score=36.96 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
...+..|+.++..+..++..|+..+..+..+...|+.+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 79 SSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444443
No 139
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.82 E-value=2.9 Score=38.62 Aligned_cols=56 Identities=23% Similarity=0.496 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++...+.+ .+.+..|..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~-~~ei~~lk~ 177 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH-QEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 56788888888888888888888888888888777776665554443 333444443
No 140
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=87.80 E-value=0.29 Score=41.32 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|...+..|..+|..|+.++..|+.++..+..+...|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 578889999999999999999999999998888888888888776443
No 141
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.71 E-value=8.2 Score=34.46 Aligned_cols=45 Identities=33% Similarity=0.487 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
|+.+...|..++..|..+...|+.|+..|...|..+. ..|..|+.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q--~kv~eLE~ 101 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ--EKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3333333334444444444455555555555555554 45555544
No 142
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=87.52 E-value=2.1 Score=32.69 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+..|+.+...|...+..++.+++.|+.+...|.+-+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 143
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.49 E-value=2.4 Score=41.60 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
=+.+++.|..+|+.+..+...++.++..++.++..|..+...|++.|....
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777777777777777654
No 144
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.39 E-value=6.6 Score=44.55 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 300 LRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+.+++.|++.++.|+.+...||++++.
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444433
No 145
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.38 E-value=4.2 Score=31.50 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|..++...+..|-.+.++|......+..|..+...|+.++..++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556677777777777777777777777777777777664
No 146
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.34 E-value=2.1 Score=45.80 Aligned_cols=55 Identities=24% Similarity=0.444 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|..-+..+.++...+..|++|...++.++..|..+...|+.||.+|..+|..++.
T Consensus 136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 136 RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3334445556666777777777777777777777778888888888877777764
No 147
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.29 E-value=2.5 Score=32.39 Aligned_cols=38 Identities=34% Similarity=0.611 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhh
Q 018679 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL-CGPEAVA 335 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l-~g~~~~~ 335 (352)
..++.++..|+.+++.|+.+|..|+.++..| ..++.+.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555555555555555555555555555 4444443
No 148
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.22 E-value=4.4 Score=32.20 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|.+.|..|..+-+.|....-.+...|..|+.++..+..+...|+.++..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555666666666666666666666655555543
No 149
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.20 E-value=8.1 Score=35.42 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|.+|+..+..+..-|+.|+.|+..|+-++..|+..+..|..+=
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 150
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.14 E-value=5.9 Score=40.24 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.++..+++.++.+-+|..|-.+-+|+.. |+|..-...|+.+.+.|.+++..|+..|+-|..
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444455555555566555554444433 344444444444444444444444444444443
No 151
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.06 E-value=9.5 Score=34.31 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.++..|..++...+.+...++.++..++.+...++.+|..|+.+...+.-|+.+.+...
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~ 149 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 44556667777777777888888888888888888888888888888777777765443
No 152
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=86.99 E-value=4.3 Score=40.30 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
.-+|+.|+.+-+.|+....+|.+||..|++-+.
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555544433
No 153
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=86.96 E-value=11 Score=37.23 Aligned_cols=49 Identities=14% Similarity=0.368 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+++.++.++...+.+...++.++..++.++..|+.+-.+|...+..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777766666655544
No 154
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.90 E-value=2.1 Score=42.86 Aligned_cols=37 Identities=38% Similarity=0.698 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
..++..|+++|..|+.++..++.+|..|..+|..|++
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444443333
No 155
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.86 E-value=6.2 Score=40.14 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|-+.+...||.-+..+++||..|.-+|+.+.++|.+.+.|+..|..+|.+.
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 445666777778888999999999999999999998888888886666543
No 156
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.78 E-value=5.9 Score=41.62 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018679 265 KQSNRESARRSRLRKQAE----CEELQARVETLSNENRNLRDELQRL----SEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~----~eeLe~kv~~Le~EN~~Lr~el~~L----~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
.+.|-++++++-+||.+. +.+++.++..++++|..|++....+ ++..+.+..++..+-++|.+|. +.|++
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq--EQlrD 446 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ--EQLRD 446 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 446667777777776543 4556666667777777766654433 3334444455555566666665 77777
Q ss_pred hhhcCCC
Q 018679 337 LEQSNPT 343 (352)
Q Consensus 337 L~~~~~~ 343 (352)
|.--+++
T Consensus 447 lmf~le~ 453 (493)
T KOG0804|consen 447 LMFFLEA 453 (493)
T ss_pred Hheehhh
Confidence 7766666
No 157
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.78 E-value=8.6 Score=37.64 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECEE---------LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~ee---------Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-.++.+.+++....-+.+. ..|++.+.. +...+..+..+|..+.+++...++++++|+.++..|+++++
T Consensus 140 ldel~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 140 LDELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666555554443 333333332 34456666789999999999999999999999999999999
Q ss_pred HhcC
Q 018679 327 RLCG 330 (352)
Q Consensus 327 ~l~g 330 (352)
.|+.
T Consensus 218 ~L~~ 221 (258)
T PF15397_consen 218 QLQA 221 (258)
T ss_pred HHHH
Confidence 8874
No 158
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=86.71 E-value=6.9 Score=33.42 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 252 WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDE 303 (352)
Q Consensus 252 ~~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~e 303 (352)
.+.+||+.+.++|..+||||-|. |+..+-.+..+-..|..+|.-+.++
T Consensus 47 ~MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~q 94 (121)
T PF10669_consen 47 RMKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQ 94 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHH
Confidence 35779999999999999998765 3334444433333355555554443
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.66 E-value=1.8 Score=41.77 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.-=+..++.|+++|..|+.+++++.-+|+.|+++...|-.+..++..++.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45688999999999999999999999999999999999998888765543
No 160
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.66 E-value=7.6 Score=35.24 Aligned_cols=46 Identities=35% Similarity=0.599 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|..+|+.|+.+|..|...+..+..+...|......|+.++..++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3455667777777777776666666666666666666666666654
No 161
>smart00340 HALZ homeobox associated leucin zipper.
Probab=86.59 E-value=1.4 Score=32.06 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 304 LQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+.|++-|+.|..||++|..++.+|+.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777778888888888888877764
No 162
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=86.57 E-value=8.5 Score=39.99 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018679 261 RQKRKQSNRESARRSRLRKQAECEELQA 288 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~ 288 (352)
.+|||....|--||-|..=..+|.+|-.
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~ 257 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQ 257 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667766666666666654
No 163
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.33 E-value=13 Score=33.34 Aligned_cols=45 Identities=22% Similarity=0.480 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..++.+++.++.....+.+++..|..++.+++.+-..++.++..+
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666666666
No 164
>PRK14162 heat shock protein GrpE; Provisional
Probab=86.31 E-value=1.9 Score=40.30 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 018679 299 NLRDELQRL 307 (352)
Q Consensus 299 ~Lr~el~~L 307 (352)
.|+.++.++
T Consensus 57 elkd~~lR~ 65 (194)
T PRK14162 57 DLEDKYLRS 65 (194)
T ss_pred HHHHHHHHH
Confidence 333333333
No 165
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=86.30 E-value=14 Score=34.84 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
+-|++|.+ .+...+-..|.-..-+++...|+..+..-+.+-...-.+-..++.+...|..|...+..+|.+|. ..|.
T Consensus 102 ~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~ 178 (192)
T PF11180_consen 102 DVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVR 178 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33444443 45555555555666677777777777777766666666666666677777777777777777776 5566
Q ss_pred chhhcCC
Q 018679 336 NLEQSNP 342 (352)
Q Consensus 336 ~L~~~~~ 342 (352)
.|....+
T Consensus 179 ~Lq~q~~ 185 (192)
T PF11180_consen 179 QLQRQAN 185 (192)
T ss_pred HHHHHhc
Confidence 6655443
No 166
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.19 E-value=6.9 Score=44.85 Aligned_cols=47 Identities=28% Similarity=0.501 Sum_probs=21.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 282 ECEELQARV-ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv-~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+..++.+. ..|..+..++..+++.|+.+.+.|+.++.+|++++..+
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 33333334444445555555555555555555554444
No 167
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.14 E-value=3.2 Score=42.54 Aligned_cols=60 Identities=28% Similarity=0.290 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|-.-|+|-.+--.+.|..++.+.-|...||.+++++......|+.|+..|++-++.+.
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444566666566667778888888899999999999999999999999999888876
No 168
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=86.02 E-value=7 Score=36.71 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 018679 256 ERELKRQKRKQSNRESARR 274 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARr 274 (352)
|.-++|.||-+..+.++=.
T Consensus 19 eel~~rLR~~E~ek~~~m~ 37 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMV 37 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456777777777666543
No 169
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.92 E-value=6.9 Score=36.15 Aligned_cols=47 Identities=30% Similarity=0.493 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLS---------------EECEKLTSENNSIKEDLS 326 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~---------------~e~~~L~~EN~~Lk~~L~ 326 (352)
+.++.+|+.++..|+.+...|+.+++.+. .++..|+.+|.+|+.+|+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555544444443 344445555555555554
No 170
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=85.60 E-value=9.4 Score=36.54 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 303 ELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
+-..++++++-|+.-|++||++|+-+-.+
T Consensus 229 eEkk~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 229 EEKKMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 33456677778888888888888776544
No 171
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.57 E-value=2.5 Score=42.69 Aligned_cols=61 Identities=31% Similarity=0.373 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCCC
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 343 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~~ 343 (352)
+..|+.++..|+.+++.|+.++..|..++..++.+...|++++..+.. +..+..+...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 64 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDD 64 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCC
Confidence 345555666666666666667777777777777777777777777664 3445555554443
No 172
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.57 E-value=6.2 Score=35.92 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..++..+..+++.|+++++..+.|...|+.|++.+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777788888888888888888888877764
No 173
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.47 E-value=3.7 Score=37.94 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.+.|...|.-|+.+++.....++.|..++..|...+..
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 174
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=85.41 E-value=4.8 Score=30.83 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|..+...|..++..|..+...|+.+....+++...-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888887777777777777777766543
No 175
>PRK00736 hypothetical protein; Provisional
Probab=85.32 E-value=4.1 Score=31.90 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.++.++..|+.....+..-|+.|.........+...|+.+|..|. +.+..+..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~--~rl~~~~~ 54 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT--ERFLSLEE 54 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 367888899999999999999998888888888899998888887 55666543
No 176
>PRK14143 heat shock protein GrpE; Provisional
Probab=85.30 E-value=2.6 Score=40.63 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDE 303 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~e 303 (352)
+|..++.+|.++...+|++
T Consensus 85 elkd~~lR~~AdfeN~RKR 103 (238)
T PRK14143 85 ELNSQYMRIAADFDNFRKR 103 (238)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 177
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.25 E-value=16 Score=36.36 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018679 310 ECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+.|..+...+..+|..
T Consensus 114 e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 178
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.23 E-value=3.2 Score=31.29 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++.++++|+.++..-+ +.=.-.-.....++..|+.||..|+++|..+
T Consensus 2 w~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 2 WLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544322 1111112333444455556666666655544
No 179
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.21 E-value=3.5 Score=42.23 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCC
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP 342 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~ 342 (352)
++..|..++..|..++..++.|...|+++|.++.. +-.+.++...++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMID 77 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEc
Confidence 33344444444444444555555556666666554 344555554443
No 180
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=85.19 E-value=2.5 Score=41.40 Aligned_cols=48 Identities=31% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+-.+..+|+.+.+.|+.++.+|. .+..+.+.|+.||.+|++.|.--..
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 33444555555555555554433 3344568899999999998866543
No 181
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.03 E-value=3 Score=43.91 Aligned_cols=50 Identities=12% Similarity=0.298 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++.|+.+++.|..+...|.++|+.|+.++..|+.+...++.++....
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~~ 131 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTAT 131 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Confidence 34566667777777777888888888888888888887777776655443
No 182
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=84.99 E-value=8.7 Score=34.86 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
++-.+..++.++.|..|+-+-+.|-.++.+|..++...+.....|...|..|...+..
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556677889999999999999999999998888777777777777666555443
No 183
>PRK14155 heat shock protein GrpE; Provisional
Probab=84.79 E-value=1.9 Score=40.79 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRD 302 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~ 302 (352)
+|+.++..+.++.+.+|+
T Consensus 31 elkd~~lR~~AefeN~RK 48 (208)
T PRK14155 31 ALKDQALRYAAEAENTKR 48 (208)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 184
>PRK14158 heat shock protein GrpE; Provisional
Probab=84.66 E-value=2.9 Score=39.20 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
++++|..++..+.++...+|++..
T Consensus 55 e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 55 EAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 185
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.66 E-value=7.8 Score=41.61 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=37.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...++.+|
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445555554322234556666777777777777766666666666666666666666544
No 186
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.37 E-value=7.9 Score=37.00 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018679 304 LQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L 325 (352)
...|+.+.+.+..|-.+|.++-
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHH
Confidence 3333333333333444444333
No 187
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.34 E-value=9.3 Score=42.88 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++-..=+--+.+-+..++.|.+.+..|+.||++|..++..+..+..+|+.++.-|+.+|....
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444555666777889999999999999999999999999999999999999999998554
No 188
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=84.08 E-value=18 Score=31.81 Aligned_cols=46 Identities=33% Similarity=0.411 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 283 CEELQARVETLSNENRNLR--------DELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr--------~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..+..++..|+..+..|+ .++..|---+..|...+..+|.+|+.|
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 4444444555555444444 444444444555566777777777776
No 189
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=84.08 E-value=6.8 Score=42.05 Aligned_cols=67 Identities=19% Similarity=0.383 Sum_probs=43.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~E-------N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+++.-...+++..+|...+-+++.+++++++++.|+.. ..+..++++.|+.+....+...+.|+.+|
T Consensus 169 ~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 169 IEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333456778888888888888999999999988874 23445556655555555444444444333
No 190
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.06 E-value=11 Score=29.15 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.-...++.++..-+..|..|..+|..|+.+.+.|+.
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556778888888888888888888888777764
No 191
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.97 E-value=15 Score=32.80 Aligned_cols=63 Identities=25% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 263 KRKQSNRESARRSRLRKQAECEELQ-------ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe-------~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++..-+.+.+.-.+|++.++.|+ .++..|+.+...+..++..++.++..+ +..++.+|..+
T Consensus 113 ~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 113 ADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3445555666666666666666664 355566666666665555555444433 23344444444
No 192
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.95 E-value=3.6 Score=34.09 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=20.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 287 QARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 287 e~kv~~Le~EN-~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+|..|..-- .....+|..|+.++..|..||..|+.+|...
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544211 1134455555555555555555555555443
No 193
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=83.92 E-value=4.4 Score=41.05 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..+++++.++..-..||..+.++++.++.-|..|...-.+||+.|.+-
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999988764
No 194
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=83.85 E-value=7.6 Score=34.10 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
-+..||+.+|..|+.|+..+..-...|...+..|+-.+.+.++++..+.....+.
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~ 79 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3445777889999999998888888999999999999999999988876655443
No 195
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=83.74 E-value=2.5 Score=36.53 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|.+.|+.+|..|.+++..|+.||.-||.
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666667777766653
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.71 E-value=15 Score=36.72 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|..++..+..++...+.++..++.+...|......+.+++.++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433333
No 197
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.67 E-value=5.9 Score=42.60 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++|+.+|+.+-..++.....|..++....+||+.|+.+|..|+.+|...
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666666777777777777777777777777777777776543
No 198
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=83.60 E-value=5.6 Score=39.20 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
=|.|+-+++ =+.+|+.|..+|..|+..|+.||++|...++.++.|+
T Consensus 67 y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 67 YNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344544432 3456677777777777777777777766666666665
No 199
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.48 E-value=14 Score=31.11 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 279 KQAECEELQARVETL--SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 279 Kq~~~eeLe~kv~~L--e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++..||.+++.| ..+...|+-++..++.++..|..+.+.+...+.-|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777 77777777777777777777777777666555544
No 200
>PRK10698 phage shock protein PspA; Provisional
Probab=83.42 E-value=14 Score=34.89 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 272 ARRSRLRKQA---ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 272 ARrSR~RKq~---~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
||..=.||+. .+..|+.+++.++.....|+..+..|+.++..++..-..|..+...-.....|......
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~ 158 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDS 158 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444443 45556677777777778888888888888888888888888777666554444444433
No 201
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.25 E-value=5.8 Score=37.27 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++.|.....++|..|....+.|..||..||+-|--|..
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 34444444446777777788888999999988877743
No 202
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.22 E-value=9.1 Score=39.89 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el 304 (352)
+.++|..+..|+.||..|..+.
T Consensus 50 ~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 50 LQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 203
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=83.21 E-value=4.9 Score=35.43 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+....+-+..|+.||..|+..|-.+++.++.=+.....|+++|..+
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455677889999999999999999999999999999999999865
No 204
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.11 E-value=3 Score=39.23 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|.|.+++++|-.||++|++++..+ .||.+||.-|.+-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 4678889999999999999988654 4555555544443
No 205
>PRK14148 heat shock protein GrpE; Provisional
Probab=83.10 E-value=3.8 Score=38.40 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
|+.+++.|+.+...|+.++.++..+++-++....+=++++.+.....-+.+|...+
T Consensus 45 l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~ 100 (195)
T PRK14148 45 AKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVI 100 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33333333333333333333333333333333333333333333333333333333
No 206
>PRK09039 hypothetical protein; Validated
Probab=83.03 E-value=4.6 Score=40.54 Aligned_cols=39 Identities=8% Similarity=0.172 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++..++.+..+...++..|+++++.|+.++..|.+.|..
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444433333
No 207
>PRK14160 heat shock protein GrpE; Provisional
Probab=82.96 E-value=4.2 Score=38.57 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
++.|+.++..|+.+...|+.++.++..+++-++....+=++++........+.+|...+|.
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 4445555555555555555555555555555554444445555555556666677666665
No 208
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=82.96 E-value=6.2 Score=31.56 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
+++..+..|+.||=.|+-+|-.|.+..
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345555555555555555554444443
No 209
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.94 E-value=11 Score=39.61 Aligned_cols=55 Identities=25% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+.|+..++..+-++...|+.||.++ ++..|..+...|+.....|+..+.+|.+.+
T Consensus 280 e~rrhrEil~k~eReasle~Enlqm--r~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENLQM--RDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566666666667777776666544 556688888888888888888888887655
No 210
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.84 E-value=6.5 Score=32.40 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|..++..|+.++..|+.+...+.++|..+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 211
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=82.82 E-value=4.3 Score=34.19 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+|+.++...+.|-.-||+.|..|..++..|+.|..+++.+...+
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4577777888888877778777777777777777666666655443
No 212
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.66 E-value=12 Score=37.49 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.++-+|+.++..+-.||++|...|...+.--..|..|+..|+++-..
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777777777777777777777766544
No 213
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.63 E-value=22 Score=33.21 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..+..++..|+-|+..|..++..+
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 214
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.36 E-value=29 Score=29.86 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
--+.-.++|..+.+.|+.-+..|+.+...+.+.+..|..+...+...|
T Consensus 27 ~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 27 DEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444433
No 215
>PF15556 Zwint: ZW10 interactor
Probab=82.36 E-value=25 Score=33.68 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
..++|.+.++-.+....++..|.+....++..-..-+.+|+.|..++..|+.+--.-+++|.
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQ 179 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQ 179 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555556666666655555555555555565555555555544444444433
No 216
>PRK14127 cell division protein GpsB; Provisional
Probab=82.35 E-value=3.1 Score=35.73 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+.++++...++.|..||..|+.++..|+.++..+..+...
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555666666666666666666666665555555554443
No 217
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.20 E-value=5.9 Score=42.87 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+++|+.+++.++.+...|..++..+..+++.++.++.+|.+++.
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554444443
No 218
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.16 E-value=6.5 Score=36.98 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..++++|..-+..|+.+|..|..+...+.++...|..+...|.++..+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356666666666666666666665555555555444444444444333
No 219
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.12 E-value=21 Score=34.31 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
...+..|+....+++.+....++.+..|..|...|+.++..++.
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555565555555555555555555555555555555555443
No 220
>PRK14140 heat shock protein GrpE; Provisional
Probab=82.11 E-value=3.2 Score=38.75 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+++|+.+++.|+.++..|+.++.++..+++-++.
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rk 72 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKR 72 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 221
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.94 E-value=17 Score=38.04 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+|.+-+..+.++..+|+.++..|..+...|+.+...|+.+|..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445555556677777777777777777777888888877777765
No 222
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.73 E-value=19 Score=29.58 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 018679 317 ENNSIKEDLS 326 (352)
Q Consensus 317 EN~~Lk~~L~ 326 (352)
+-..|+.+|.
T Consensus 75 e~~~lk~~i~ 84 (108)
T PF02403_consen 75 EVKELKEEIK 84 (108)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 223
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.29 E-value=10 Score=42.75 Aligned_cols=77 Identities=23% Similarity=0.222 Sum_probs=54.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018679 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.-+++.-++++.+-.....+..+|..+|+.|..+-..+..+.+.+...++.|+.|...|..+++.+... +.++.+..
T Consensus 448 ~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--~~~~~qs~ 524 (980)
T KOG0980|consen 448 DDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--LSNLAQSH 524 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHH
Confidence 345566777787777777777788888888777777776777777777777777777777777777633 44444433
No 224
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.25 E-value=5.8 Score=33.79 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|...+..|..++..+..++++|+.++..+.++++.+.
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777776664
No 225
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.24 E-value=12 Score=42.60 Aligned_cols=47 Identities=34% Similarity=0.492 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhcC
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEE---------------CEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e---------------~~~L~~EN~~Lk~~L~~l~g 330 (352)
+.|+.+|+.|+..+.+|.-.|+.|+.| ..+|+.+|.+||+-|.+|+.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555666666666666666654 34788889999998888863
No 226
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=81.15 E-value=26 Score=29.99 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
....|..++..++.+++.|..+|..|++++.+|..+
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444455555555555555555555555544
No 227
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.93 E-value=13 Score=34.81 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 334 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~ 334 (352)
++.+..|+.++..++.....|+.+|..|+.++..++..-..|..+.........+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~ 152 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV 152 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777888888888888888888877777777776555443333
No 228
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=80.74 E-value=8.7 Score=35.21 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=7.0
Q ss_pred HHHHHHHhcCcchhhc
Q 018679 321 IKEDLSRLCGPEAVAN 336 (352)
Q Consensus 321 Lk~~L~~l~g~~~~~~ 336 (352)
+..+|.+++.-...+.
T Consensus 107 i~~Kl~dmrnS~tFKS 122 (162)
T PF04201_consen 107 ISRKLGDMRNSPTFKS 122 (162)
T ss_pred HHHHHHHHhcchHHHh
Confidence 4444445544333333
No 229
>PRK14153 heat shock protein GrpE; Provisional
Probab=80.69 E-value=3.5 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
+++++|+.++..+.++...++++..
T Consensus 47 ~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 47 EEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 230
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.69 E-value=12 Score=38.02 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|-+++.++|.+.-+.|..-.++|+.+++.|+++...|......|+.+.++
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444555566666666666666667777777777777777777777766666
No 231
>PF14282 FlxA: FlxA-like protein
Probab=80.53 E-value=7.3 Score=32.80 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 284 EELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|..++..|.. -...-..++..|+.++..|..+...|..+.....
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 1234455566666666666666666666665554
No 232
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=80.40 E-value=11 Score=42.73 Aligned_cols=72 Identities=31% Similarity=0.419 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 269 RESARRSRLRKQA--ECEELQARVE-----------------TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 269 RESARrSR~RKq~--~~eeLe~kv~-----------------~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.||+.+.+++- ++..|+.+++ .-+.|+..|...++.+.+++..|.++...|..+|..|.
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777766652 3444444433 11367777888899999999999999999999999999
Q ss_pred Ccchhhchhhc
Q 018679 330 GPEAVANLEQS 340 (352)
Q Consensus 330 g~~~~~~L~~~ 340 (352)
+.+.+++|.+.
T Consensus 809 ~g~~~a~lr~~ 819 (984)
T COG4717 809 GGGTVAELRQR 819 (984)
T ss_pred cCChHHHHHHH
Confidence 99999999874
No 233
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.39 E-value=18 Score=37.87 Aligned_cols=50 Identities=28% Similarity=0.320 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
.-|.+|++--+| ++.+.+..++..+|.|...|+.++..|.+++-+++.+-
T Consensus 29 ~s~~~aq~~~~~--a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 29 QSRLSAQLVILR--AESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444442222 33444555566666666666666666666555444333
No 234
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.37 E-value=33 Score=33.09 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..++.|+..++.++..|+.++..|+..|..|..+|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 344444555555555555555555555555555555444
No 235
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.33 E-value=1.9 Score=33.24 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
++.|..++..|+.+|..|..|...|+
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 236
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=80.23 E-value=2.8 Score=34.92 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
|+.+++.|..+++.|+.+|..|..+|..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666665544
No 237
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.06 E-value=14 Score=41.09 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+.|.+|...+++++..++...++|...+..|+.++.+|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56778888888999999999999999999999999999988
No 238
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=79.90 E-value=4.1 Score=44.07 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+|-.+|+.|..|+..||.++...++-..+|+..+.+|.++|+.+..
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888877777777777777777777653
No 239
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=79.83 E-value=0.57 Score=44.85 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
+.-+-.|||.+.++..|+.-...|..+.++|++++.+|.+||.+|
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888888888888888888888888888
No 240
>PRK14145 heat shock protein GrpE; Provisional
Probab=79.76 E-value=6 Score=37.18 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
|+.+++.|+.+...|+.++.++..+++-++....+=++++.+......+.+|...
T Consensus 50 l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV 104 (196)
T PRK14145 50 LKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPV 104 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333333333333333333333333333333333333333333333333
No 241
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=79.72 E-value=5.7 Score=29.97 Aligned_cols=29 Identities=38% Similarity=0.533 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
..-.....++..|+.||..|+.+|..++.
T Consensus 22 ~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 22 LDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455678889999999999999987754
No 242
>PRK14161 heat shock protein GrpE; Provisional
Probab=79.67 E-value=5.2 Score=36.93 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=6.3
Q ss_pred HHHhcCcchhhchhhcC
Q 018679 325 LSRLCGPEAVANLEQSN 341 (352)
Q Consensus 325 L~~l~g~~~~~~L~~~~ 341 (352)
+.+.....-+.+|....
T Consensus 63 ~~~~a~~~~~~~LLpv~ 79 (178)
T PRK14161 63 AKDYAIATFAKELLNVS 79 (178)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 33333333333443333
No 243
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.21 E-value=16 Score=42.71 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 018679 273 RRSRLRKQAECEEL 286 (352)
Q Consensus 273 RrSR~RKq~~~eeL 286 (352)
+..+.+++..+.+|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444444
No 244
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.16 E-value=17 Score=38.44 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 305 QRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|.++.++|..|..+|...|.+|.
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554
No 245
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.15 E-value=6.9 Score=30.73 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 278 RKQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
....++..++++++.|+.||..|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455667777777777777777777776664
No 246
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.14 E-value=10 Score=33.63 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT---SENNSIKEDLSRL 328 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~---~EN~~Lk~~L~~l 328 (352)
.++-.+|..|..++..|+.+...|..+|..++....... ..+..|..+|..|
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 455556666666666666666666666655555443332 2333444444444
No 247
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=79.11 E-value=9.4 Score=33.36 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
-+++|+.+++.|+-+...|.++-..|+++++.
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333333
No 248
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=79.00 E-value=30 Score=35.77 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 301 RDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 301 r~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+.++..|++++..|+.+...|.+++.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 72 IAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 249
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.88 E-value=26 Score=32.37 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018679 270 ESARRSRLRKQA---ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 270 ESARrSR~RKq~---~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
..||..=.||+. .++.|+..+..+......|+..|..|+.++..|+.+-..|+.+.........|.
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~ 152 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVN 152 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 344455566666666666666666666666666666666666655444333333
No 250
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=78.84 E-value=35 Score=30.07 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.7
Q ss_pred hhhchhh
Q 018679 333 AVANLEQ 339 (352)
Q Consensus 333 ~~~~L~~ 339 (352)
.|..|.+
T Consensus 106 rLk~LG~ 112 (136)
T PF04871_consen 106 RLKELGE 112 (136)
T ss_pred HHHHcCC
Confidence 3344433
No 251
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.80 E-value=21 Score=31.40 Aligned_cols=52 Identities=10% Similarity=0.318 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.=.++++.|..+++...+-....+.++..++.....+..+...+..-+..|.
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3346667777777777777777777777776666666666666666665554
No 252
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.77 E-value=18 Score=41.54 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 018679 253 IQDERELKRQKRKQSNRESARRSRLRKQ------------AECEELQARVETLSNENRNLRDELQRLSE----------E 310 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRESARrSR~RKq------------~~~eeLe~kv~~Le~EN~~Lr~el~~L~~----------e 310 (352)
+......=-.|-+.-+|..|+...++.| ..|++|++.+-.|+.||..|..+|..|.. .
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~ 569 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQN 569 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 018679 311 CEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~~l 328 (352)
+..+..++..|+.-|.+|
T Consensus 570 ~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 570 NNDLELIHNELKKYIDAL 587 (1195)
T ss_pred hhHHHHHHHHHHHHHHHH
No 253
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=78.70 E-value=7.7 Score=42.34 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.++|+.+|+.|+.++..|+++|+.+..++...+.+..+-..++
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~ 123 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKI 123 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444444444333333
No 254
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.65 E-value=5.2 Score=29.12 Aligned_cols=27 Identities=44% Similarity=0.740 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
.|+-|.+=.+.|..||..|+.++.+|+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677777776666665553
No 255
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=78.65 E-value=6.8 Score=32.97 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 018679 292 TLSNENRNLRDELQ 305 (352)
Q Consensus 292 ~Le~EN~~Lr~el~ 305 (352)
.|...|.+|..++.
T Consensus 28 ~l~~~n~el~~el~ 41 (106)
T PF05837_consen 28 RLKRRNQELAQELL 41 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 256
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.63 E-value=32 Score=33.94 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+++.++.+..+..+++..++..+...+....+|..+-.+|
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333
No 257
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=78.50 E-value=4.7 Score=35.31 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
-.|..|+.++|+..+ ++++++|+.+++.|+.+++.+.
T Consensus 96 ~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 96 YWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555544433 2455556666655555555443
No 258
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.46 E-value=20 Score=35.60 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 300 LRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|.-+|...+..++.|+.|+.+|+.+|++.+.
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566777888888888888887654
No 259
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.44 E-value=14 Score=40.70 Aligned_cols=65 Identities=31% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Q 018679 266 QSNRESARRSRLRKQAE-----CEELQARVETLSNENRNLRDEL----------------------------QRLSEECE 312 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~-----~eeLe~kv~~Le~EN~~Lr~el----------------------------~~L~~e~~ 312 (352)
+-+|...--.+.|+... +++..+++..|+.||..|+.++ ...+....
T Consensus 483 ~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e 562 (716)
T KOG4593|consen 483 QLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLE 562 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 018679 313 KLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 313 ~L~~EN~~Lk~~L~~l~g 330 (352)
.|.+||.+|++.|.++.+
T Consensus 563 ~LqaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 563 ELQAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHHHhc
No 260
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=78.35 E-value=6.1 Score=41.55 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.|+.....-..+...|+++.+.|+.+|..|-++|++|+
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5667777777777888999999999999999999999986
No 261
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.35 E-value=19 Score=36.31 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..|..-+...+.+|..|..++..|++++.++.-++.-|++++.+++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 44556667777777777777777777777777777777777777653
No 262
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=78.34 E-value=22 Score=31.14 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 281 AECEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el-~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.+...+..|+.+++.....+ ..+.++....+.....+..+|..|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555444444 233333344444444444444433
No 263
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.05 E-value=32 Score=33.18 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
.+-+..+..|+.++..|+..|..|..+|..|+
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 34444556666666666666666666555443
No 264
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.85 E-value=23 Score=37.07 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018679 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
+..|.+-...+..++..|..++..|..+.+.|+++|.+|+ ..+..|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ--NELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 4556666777777888888888888888888888888886 4455444
No 265
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=77.77 E-value=15 Score=32.18 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Q 018679 278 RKQAECEELQAR--VETLSNENRNLRDELQRLSEEC-EKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~k--v~~Le~EN~~Lr~el~~L~~e~-~~L~~EN~~Lk~~L~~l~ 329 (352)
++++++.+|++. ...+......|+.+|+.....+ ..+..+.......|.++.
T Consensus 78 ~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~ 132 (139)
T PF13935_consen 78 RAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYA 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 355555555544 4444455555555554444444 233333333344444443
No 266
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.75 E-value=14 Score=33.65 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018679 296 ENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~E 317 (352)
|.+.|+.+|+..+.+.+.|+.+
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 267
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=77.61 E-value=4 Score=35.62 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
|..-+|+|+.++..|+-||..|+++|..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44568999999999999999999987543
No 268
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.50 E-value=9.6 Score=39.04 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|+.+++.|+.++..|..++..++++...|+.|+.+|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555556666666666666666666667777766654
No 269
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=77.33 E-value=17 Score=29.90 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..|...+..|..-...|.++...|..++..|...|++.+.++++..
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444555555555555667777777777776654
No 270
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=76.98 E-value=27 Score=34.28 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECE-ELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~e-eLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
|++.|-.-|+.-.+.--=+|.+|-|...- +|+...++-..--.+|+.++++|+++..+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~E 69 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHE 69 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445444555555555555555554443 34443333333333444444444444333
No 271
>PRK14144 heat shock protein GrpE; Provisional
Probab=76.84 E-value=7.4 Score=36.65 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLR 301 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr 301 (352)
+|..++..+.++...+|
T Consensus 63 elkdk~lR~~AefeN~R 79 (199)
T PRK14144 63 ENWEKSVRALAELENVR 79 (199)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 272
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=76.78 E-value=16 Score=33.97 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
=.+|++++++.+.+.+.++.+..+|+.+|...++
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446666666666666666666666666655543
No 273
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=76.65 E-value=8.1 Score=34.20 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+...|.-++.|+.|...=..+|..|++++..+...|..|..+
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444455555555555555555555555556666555543
No 274
>PRK14157 heat shock protein GrpE; Provisional
Probab=76.59 E-value=7.1 Score=37.54 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVE 291 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~ 291 (352)
+|-+++.+.+++|.+
T Consensus 101 lR~~AEfeNyRKR~~ 115 (227)
T PRK14157 101 QRERAEFINYRNRTQ 115 (227)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 275
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=76.47 E-value=24 Score=35.60 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 018679 260 KRQKRKQSNRESARRSRLRKQAEC 283 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~ 283 (352)
+++|+++++|...-..=+||..++
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777666555554433
No 276
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=76.42 E-value=11 Score=41.17 Aligned_cols=51 Identities=31% Similarity=0.373 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 282 ECEELQARVETLSNENRNLRDELQR----------------------------LSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~----------------------------L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
++.+|+..+..|+.++..|..+|.. -+..++.|+.||..|+++|..|.+..
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~ 589 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGN 589 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4556666666666666666655543 23467788899999999998886543
No 277
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.41 E-value=41 Score=27.56 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSN-----ENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~-----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.++..||.+++.--. ....|..++..|+.+...|..+|..|+.+|.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566655543322 4455777888888888889999999988774
No 278
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=76.34 E-value=9.6 Score=32.12 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|+...+-...+...|++.+..|..+|..|+.+|.++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666666666666666654
No 279
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.20 E-value=14 Score=34.25 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|..+++.....|..|..+|..|..+...|+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666555555543
No 280
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=76.18 E-value=16 Score=31.01 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
...||.|+.-+==++.+.|.|+.=.+.|+.|...-+++|+.|++++
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666665555555555555444444555555555555555443
No 281
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.96 E-value=28 Score=34.99 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018679 272 ARRSRLRKQAECEELQARVETL 293 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~L 293 (352)
-+|.-+|++.+.++|++....+
T Consensus 353 rqraeekeq~eaee~~ra~kr~ 374 (445)
T KOG2891|consen 353 RQRAEEKEQKEAEELERARKRE 374 (445)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3444456667777776544433
No 282
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.93 E-value=29 Score=38.20 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCcchhhch
Q 018679 316 SENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 316 ~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
.++++|..+|.+|.|..+|-+.
T Consensus 300 ~~r~kL~N~i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRVFCR 321 (670)
T ss_pred HHHHHHHHHHHHhhcCceEEEE
Confidence 7777888888888877666543
No 283
>PRK02224 chromosome segregation protein; Provisional
Probab=75.85 E-value=31 Score=38.20 Aligned_cols=8 Identities=50% Similarity=0.667 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018679 284 EELQARVE 291 (352)
Q Consensus 284 eeLe~kv~ 291 (352)
.+|+.+++
T Consensus 512 ~~l~~~~~ 519 (880)
T PRK02224 512 ERLEERRE 519 (880)
T ss_pred HHHHHHHH
Confidence 33333333
No 284
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=75.80 E-value=28 Score=32.81 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.++..|+.|...++.+|..|+.++..|.
T Consensus 154 ~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 154 QEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 285
>PF14645 Chibby: Chibby family
Probab=75.44 E-value=11 Score=32.50 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..|+++...|++||.-|+-+++.|-.=.....+|..-+..+
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~ 114 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKE 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566667777777777666644444444444444443
No 286
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=75.42 E-value=23 Score=28.78 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.+++.|..-...||.+|..+.+-...|..++..+..
T Consensus 18 ~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555555555444
No 287
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=75.35 E-value=24 Score=36.43 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 299 NLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|+.++..|++++..|+.+...|.+++..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 288
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=75.31 E-value=5.9 Score=30.71 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++..|++.+.-|+.|-..+ |..|-.|++.|+.+|..|.-+|
T Consensus 4 qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceee
Confidence 4555666666666665432 2333344444444444444333
No 289
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=75.21 E-value=14 Score=31.54 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=24.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+-+||.++|..++-...+-..| .-+.|++.|..+++.+.++...+..+..+
T Consensus 55 msQNRq~~~dr~ra~~D~~inl-----~ae~ei~~l~~~l~~l~~~~~~~~~~~~~ 105 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINL-----KAEQEIERLHRKLDALREKLGELLERDQE 105 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3467777765222222222222 22445566666666665555555554443
No 290
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.20 E-value=28 Score=40.15 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+.+.|+-+++.|+.+...++.++..+..+|..|..|+..|...+....
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455555666666666666666666666666666666666666655544
No 291
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=75.19 E-value=12 Score=32.06 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...|..+++.++++|+.|..+...|+.++..|+.+-.-|.++.+.-
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~ 97 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSE 97 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3445556666666666666666666666666666644444444443
No 292
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.14 E-value=19 Score=28.93 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.+|++|+..|+-....-.+-|+.|...+.+......++..+|..|. +.+.++....
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~--~kl~~~~~~~ 59 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT--EKLKDLQPSA 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 5788888888888888888888888888888888888888888887 5566665443
No 293
>PRK12705 hypothetical protein; Provisional
Probab=75.08 E-value=43 Score=35.80 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+++.+.|+.....|..+...|..+...|......+..+|+.+
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333333333333333344443
No 294
>PHA03162 hypothetical protein; Provisional
Probab=74.99 E-value=2.1 Score=37.94 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 278 RKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
+++.-+|+|+.++..|+-||..|+++|
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999988
No 295
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.98 E-value=29 Score=41.55 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHH
Q 018679 264 RKQSNRESARRSRLR 278 (352)
Q Consensus 264 Rk~~NRESARrSR~R 278 (352)
...+.++.|++.+.-
T Consensus 325 kLEkQaEkA~kyleL 339 (1486)
T PRK04863 325 DLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566555443
No 296
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=74.86 E-value=48 Score=31.17 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
...|-.-...+..||..|+.+|..|.+++..|+..+..|..+-..|..
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566778899999999999999999999888888887776653
No 297
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=74.71 E-value=16 Score=28.52 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+++++..|+..+..+..++..+.+++..+..-+.-
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 298
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.70 E-value=24 Score=38.55 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Q 018679 278 RKQAECEELQARVETLSNENRNLRDELQRLS---EECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~---~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+..++.+|+++++.++.+.....+-++.|. ....+..++|..||++|..|.
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq 173 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQ 173 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHH
Confidence 5667777888777777665433332222222 223344556666666666654
No 299
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.67 E-value=27 Score=38.84 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 018679 292 TLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~---e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+.||-.|+++|..|++ +++.|+.|+++|.+++.-|
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l 140 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELL 140 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433332 2333334444444433333
No 300
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=74.64 E-value=34 Score=28.69 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...+|..|..++..|..+...|.+.|..+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 301
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=74.54 E-value=4.2 Score=37.31 Aligned_cols=26 Identities=46% Similarity=0.687 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.|+.++++|+.|+..|+.|+ .+++++
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 34444444444444444444 444444
No 302
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.22 E-value=29 Score=37.90 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+..+|+.+++.|+.+++.|+.+++.++
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444443
No 303
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=73.98 E-value=26 Score=39.03 Aligned_cols=43 Identities=16% Similarity=0.399 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+..+.|.++++.+.....+++..-++|...++.|+.|..+|++
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666664
No 304
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.84 E-value=41 Score=31.14 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENR 298 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~ 298 (352)
.+..+++++|+.++..|+.+..
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 305
>PRK15396 murein lipoprotein; Provisional
Probab=73.80 E-value=23 Score=28.75 Aligned_cols=45 Identities=13% Similarity=0.340 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+++|..+|+.|..+..+|...+..++...+....|-.+--++|-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667666666666666666666666655555554444443
No 306
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.73 E-value=58 Score=28.92 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 276 RLRKQAECEELQARVETLSNENRNLR-------DELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr-------~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|.++..+++.++..+..++.+...|+ .++..|+.++..++.+...++.++..+
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544444443 244444444444444444444444333
No 307
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=73.71 E-value=5.8 Score=37.34 Aligned_cols=39 Identities=31% Similarity=0.470 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
...+.|+.+...|+.+...|+.+...|+.+...++.++.
T Consensus 112 ~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 112 KDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 333333333333333333333333444444444443333
No 308
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=73.54 E-value=32 Score=37.60 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.+++++..+++.|+++...-+.+|..|+.++++.+.+.++|++
T Consensus 107 seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 107 SEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555554444444443
No 309
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.51 E-value=18 Score=44.29 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=60.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
.+...+.+++++.-=++.+..+++++..|++|+.+|+..+..+.+....++.|..++.++|..+...
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3457788999999999999999999999999999999999999999999999999999999997754
No 310
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=73.51 E-value=10 Score=38.74 Aligned_cols=53 Identities=30% Similarity=0.555 Sum_probs=36.5
Q ss_pred CCCCchhhhhhhhcCCCCCC--CCCCCCCCC--CCCCCCccccCCCCCCCCCCCCCCCcc
Q 018679 26 PSYADWSSSMQAFYGAGATP--PPFFASTVA--SPTPHPYLWGSQHPLMPPYGTPVPYQA 81 (352)
Q Consensus 26 ~~~pdW~~~mQAYy~~~~~p--p~y~~s~va--~~~phPYmWg~q~~m~pPyGtp~PY~a 81 (352)
|.-.|-+ .+|.-|-+..+| .+||.-.-+ +.-|||-.|-. -|+|+||-.+||++
T Consensus 72 ~~p~dis-~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~wp~--y~~pt~~~~~p~p~ 128 (421)
T KOG3248|consen 72 PLPADIS-PKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGWPV--YPIPTFGFRHPYPG 128 (421)
T ss_pred CCccccc-ccCCCCCCCCCccccccccCCccccccCCCccCCcc--ccCCCCCCCCCCch
Confidence 4557888 689776654443 467754333 46799999922 35678999999996
No 311
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.39 E-value=34 Score=36.99 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+.+|..+++.++.+...+..++..+++++..++.+...|+.+|.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433
No 312
>PHA03155 hypothetical protein; Provisional
Probab=73.38 E-value=4.4 Score=35.15 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
-+|+|+.++..|+-||..|+++|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998844
No 313
>PRK14160 heat shock protein GrpE; Provisional
Probab=73.34 E-value=21 Score=34.01 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.|+.++..|+.++..|..++..|+..+..+.++..-++.+
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333
No 314
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.28 E-value=41 Score=35.18 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+..|...-..|+.+|..|.++..+|..+...|..+-+.|.
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555544444443
No 315
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.93 E-value=32 Score=39.88 Aligned_cols=43 Identities=33% Similarity=0.512 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++++..++..|+...+.|+.++..+.+++..+..+...++.++
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL 483 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444443333333333
No 316
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=72.92 E-value=14 Score=29.25 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.|..+++.|+..|..|..-++..+.+++.|.....+-.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~e 39 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYE 39 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777776666666666666655444433
No 317
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=72.90 E-value=76 Score=29.01 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=25.8
Q ss_pred CCcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018679 248 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARV 290 (352)
Q Consensus 248 ~~~~~~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv 290 (352)
+-|....+|++.||++...-.+.....--.|+.....+.+.+.
T Consensus 40 llDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~ 82 (157)
T PF15236_consen 40 LLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRR 82 (157)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667889888888766555555554444444444444443
No 318
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=72.83 E-value=13 Score=33.43 Aligned_cols=33 Identities=15% Similarity=0.441 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSN---ENRNLRDELQRLSEECE 312 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~---EN~~Lr~el~~L~~e~~ 312 (352)
+..+.+...+++.|+. .|+.|+.+|+.|+.++.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3344444444555554 45555555555555544
No 319
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=72.75 E-value=11 Score=38.08 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.+|+.+++.|+.++..|..++..++.+...|+.++..|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567788888888888888888888888888888887774
No 320
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.75 E-value=38 Score=40.08 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
+..++++..++..++.+...++.++..+++++..|+.+...|+.++..|.+.+.+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~ 330 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQ 330 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34567778888888888888888888888888888888888888888888766654
No 321
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=72.47 E-value=23 Score=37.71 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|.++.- ++|+..++.+.+.+..|+....+++.++..|+-+++.|..+-+.|+.+|++
T Consensus 435 drl~~~L--~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 435 DRLVESL--QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 345555566667777777777777777777777777777777777766655
No 322
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.36 E-value=12 Score=38.13 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 018679 281 AECEELQARVETL 293 (352)
Q Consensus 281 ~~~eeLe~kv~~L 293 (352)
+|.++|..+|+.|
T Consensus 46 kEN~~Lk~eVerL 58 (420)
T PF07407_consen 46 KENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
No 323
>PRK11546 zraP zinc resistance protein; Provisional
Probab=72.30 E-value=14 Score=33.17 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~L 321 (352)
+..+++|++++-..+.|...|.. +|..|..|+..|+.+..++
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444432 3444444444444444433
No 324
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=72.28 E-value=26 Score=34.65 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECE--KLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~--~L~~EN~~Lk~~L~~ 327 (352)
++..||+++..++.++.....+|..+++++- .+..+-..|.+..++
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK 213 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEK 213 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655532 333444444444433
No 325
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=71.83 E-value=21 Score=31.09 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+..|+.-|++. +-++.+++++..++..+-.+...|..++..+..++..+
T Consensus 40 ~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666653 33345555566555555555555555555555554444
No 326
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=71.62 E-value=36 Score=36.03 Aligned_cols=78 Identities=29% Similarity=0.343 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHHHHHHHHHHHHHHHHHH--------------------
Q 018679 254 QDERELKRQKRKQSNRESARRSR--------LRKQAE---CEELQARVETLSNENRNLRD-------------------- 302 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR--------~RKq~~---~eeLe~kv~~Le~EN~~Lr~-------------------- 302 (352)
+-|..++|.||.+..|.++=.-+ .|-|.+ |-.|..--..|+.+|.+|++
T Consensus 48 qkEel~rr~rr~e~er~slm~~~g~l~ndvnrrlQ~hl~eir~lK~~nqKlq~~nqElrdL~cfldddrqkgrk~arewq 127 (513)
T KOG3819|consen 48 QKEELQRRLRRAEAERVSLMLAHGGLMNDVNRRLQQHLGEIRGLKDANQKLQQDNQELRDLCCFLDDDRQKGRKLAREWQ 127 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhccccchHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHH
Confidence 45666778888888877764322 233333 33344555566666666655
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 303 -------------------ELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 303 -------------------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
++..|+.+.+.|+.||-+|++-|-...++
T Consensus 128 rfgr~tS~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~~~~~e 175 (513)
T KOG3819|consen 128 RFGRQTSGAMLPEVAGYQQKLYELENKQEELLRENLELKELCHSRLGE 175 (513)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccCC
Confidence 56777888888999999999888864443
No 327
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.58 E-value=46 Score=33.27 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
-+++-|..+++.|+....+|+.++.....+++.++.....|+.++..|+..
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888888888888888888888888888743
No 328
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=71.57 E-value=22 Score=35.57 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
++.+|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544444444444433
No 329
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=71.37 E-value=28 Score=32.31 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=6.0
Q ss_pred cCCCcccccc
Q 018679 207 MPATNLNIGM 216 (352)
Q Consensus 207 ~p~t~Lnigm 216 (352)
+|..-+|+|+
T Consensus 89 i~~s~VnDGI 98 (176)
T PF12999_consen 89 IPSSRVNDGI 98 (176)
T ss_pred eehhhhcCCc
Confidence 3555567765
No 330
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.35 E-value=28 Score=34.48 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQR---LSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~---L~~e~~~L~~EN~~Lk~~L~ 326 (352)
--++++++++...-..|..|..+|.. |-+..+.|+.|-+.|+.+|.
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776643 33444555555555555554
No 331
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.28 E-value=67 Score=27.71 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 018679 311 CEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~~l~ 329 (352)
-..|+.|+..++.+|.+|.
T Consensus 100 k~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665
No 332
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=70.97 E-value=17 Score=34.84 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQ---RLSEECEKLTS 316 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~---~L~~e~~~L~~ 316 (352)
...+|.++.+.|++||..|+.++. .|++|+++|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444 33444444443
No 333
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=70.96 E-value=42 Score=38.89 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 284 EELQARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN-~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|+++|..++.+- ..|..++..+..++..|..|+..|.+++..|.
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333332 33444444444444445555555544444443
No 334
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=70.63 E-value=69 Score=32.10 Aligned_cols=44 Identities=32% Similarity=0.570 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|-.+|..|.....+|+.+-..+.+++..|+.+-..|-..+..|
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 335
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.61 E-value=37 Score=30.55 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018679 304 LQRLSEECEKLTSENN 319 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~ 319 (352)
++.|+.+++.|..+|.
T Consensus 53 ~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 53 NEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 336
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.54 E-value=18 Score=32.72 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 018679 284 EELQARVETLSNENRNLRDELQRLS-EECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~-~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|+...-.++....+|+.++..++ .+...|+.++..|+.++..|.
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 337
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.52 E-value=14 Score=29.75 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|+.+...|..++..|+.+...|..+...|+..|..+-
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555555443
No 338
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.19 E-value=7 Score=41.10 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcccCC
Q 018679 47 PFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYP 84 (352)
Q Consensus 47 ~y~~s~va~~~phPYmWg~q~~m~pPyGtp~PY~a~yp 84 (352)
++|+. ++|||.+= .+.+.||--.||.+|||
T Consensus 424 p~f~m----~~~hP~~~----~p~~~~g~~~P~~~mpp 453 (483)
T KOG2236|consen 424 PSFPM----FQPHPPES----NPPANFGQANPFNQMPP 453 (483)
T ss_pred CCCCc----cCCCCCCC----CCcccccccCccccCCC
Confidence 66665 36677654 46667777778777776
No 339
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.17 E-value=35 Score=35.73 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
..+.+|+.++..++.+.......+..++..+..+..
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 344445555555444444444444444444333333
No 340
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.12 E-value=36 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+++.+|+++++.|++.-..|..+++.+.+..+.|.
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444444444333
No 341
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=70.08 E-value=26 Score=30.61 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|+.++..|..|-.-=-++++.|-..+++|+.++..|.+-|..|
T Consensus 15 ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 15 EVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333344444444444444444444444333
No 342
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=70.02 E-value=8.8 Score=31.10 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
..|..||..|+.+|..|+.+++++.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544444433
No 343
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.98 E-value=16 Score=39.55 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
.+++++..++.|+.+...+..++..++.++..|+.+..
T Consensus 343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 344
>PF13514 AAA_27: AAA domain
Probab=69.98 E-value=51 Score=38.00 Aligned_cols=50 Identities=36% Similarity=0.555 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
..|+.+...|..++..|..++..|..+...++.+|..|.+.+.+..|...
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e 941 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQE 941 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 56777788888888888888888888888999999999888877776653
No 345
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=69.96 E-value=27 Score=30.69 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=44.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
-++.|..=---|.-=+++|..||.++..++.-+..|..+|..|+..+.+.+..+..|+.
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33444444444455568889999999999999999999999998888888887776654
No 346
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=69.86 E-value=37 Score=39.36 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=7.6
Q ss_pred CCCchhhhhhhhcC
Q 018679 27 SYADWSSSMQAFYG 40 (352)
Q Consensus 27 ~~pdW~~~mQAYy~ 40 (352)
|-..|..++.+-=|
T Consensus 527 v~~~y~~Aie~alG 540 (1163)
T COG1196 527 VKEKYETALEAALG 540 (1163)
T ss_pred cChHHHHHHHHHcc
Confidence 33466666665544
No 347
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=69.82 E-value=24 Score=29.91 Aligned_cols=39 Identities=21% Similarity=0.455 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++...-+-|+.|+.-...|+++|+.|+.-...|...+.+
T Consensus 58 Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 58 QSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445567777777788888888888888888777654
No 348
>PHA03162 hypothetical protein; Provisional
Probab=69.75 E-value=6.7 Score=34.88 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 303 ELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
-++.|..++.+|+.||..||.+|..-.+++
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~~~~~ 43 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEGTDDD 43 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 357788888999999999999998876665
No 349
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=69.72 E-value=23 Score=31.87 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
....|...|..|.+.+..|..++..+..
T Consensus 109 ~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 109 AIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 350
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=69.71 E-value=17 Score=38.86 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++++.+-.++.++..||..|..+|..++++...++.|+..|.+-|..+.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666666777777777666666666666666555543
No 351
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=69.67 E-value=37 Score=27.56 Aligned_cols=47 Identities=15% Similarity=0.349 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~~L~~l 328 (352)
..++++.++..--.|...++..|-.|......++ .|..+|+.+|...
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5577777777777778888888877777665554 6777777777654
No 352
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.66 E-value=32 Score=29.92 Aligned_cols=45 Identities=36% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+|.++...++.+...|+.++..+..++..|..+-..+..++..+
T Consensus 44 ~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 44 EELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444444443
No 353
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.59 E-value=47 Score=33.21 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+-+|..++..|..+-..|-.++..|+.+...
T Consensus 50 vrE~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 50 VRELREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433344333333333
No 354
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=69.45 E-value=70 Score=28.48 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
......+..-++.++.|..||..|+..-..-- |++|.-|++
T Consensus 71 ~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~L-Pd~V~RL~~ 111 (135)
T TIGR03495 71 AQARALLAQREQRIERLKRENEDLRRWADTPL-PDDVIRLRQ 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCC-cHHHHHHhc
Confidence 33333444445566777777777776654432 566666654
No 355
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=69.26 E-value=43 Score=27.23 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|..++...+.|+..|..-+..|+.++.....-|..|..++..++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666665554
No 356
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.17 E-value=18 Score=40.22 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.|+.+...|+.|..+++.+-.+|-++|..|+.||-.|..++.-|.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555566666666666666665554
No 357
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=69.12 E-value=21 Score=31.55 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
..++.|++++...+...+.-...|..|+..+..+..+++++..++..+-..+...
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~ 95 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSG 95 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccc
Confidence 3456788888888888888888888888888888888888888765554444333
No 358
>PF14282 FlxA: FlxA-like protein
Probab=69.09 E-value=23 Score=29.83 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 018679 284 EELQARVE 291 (352)
Q Consensus 284 eeLe~kv~ 291 (352)
..|+.++.
T Consensus 54 q~Lq~QI~ 61 (106)
T PF14282_consen 54 QLLQAQIQ 61 (106)
T ss_pred HHHHHHHH
Confidence 33333333
No 359
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.06 E-value=10 Score=32.87 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
++|-|..++..|++.|..|++|...|
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 360
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.06 E-value=24 Score=28.09 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 299 NLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|+..+...+++...|...+..|..++..
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 361
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=69.01 E-value=13 Score=36.76 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+++--||-+++....|+..|+.++..|+.....++++.+..++.|+-|+.
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556788888889999999999999999999999999999988888864
No 362
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=68.95 E-value=21 Score=29.61 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+++.+.|++||+.|..|....+
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~ 50 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAE 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555556655555554433
No 363
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=68.95 E-value=37 Score=28.18 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 299 NLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++.++..|...++.|..+|..|..+|..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667888999999999999999999998875
No 364
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.92 E-value=63 Score=34.97 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
++|+.++..++.+...|..++..++.+++.+.
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~ 243 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQ 243 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 365
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=68.92 E-value=23 Score=35.79 Aligned_cols=52 Identities=25% Similarity=0.368 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+|..+.+++|+.+.+.|.++|...+..|..|...+..|..--.-|.+.|..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 5677788899999999999999999999999888888888777777766643
No 366
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.76 E-value=98 Score=29.61 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
|+..+..++.+...+...+..|+..+..|+.....|
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333333333333333333
No 367
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=68.73 E-value=48 Score=25.35 Aligned_cols=47 Identities=32% Similarity=0.473 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 282 ECEELQARVETLSNENRNLRDEL--------------QRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el--------------~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|+.+++.|+.+...+...| +.-+.....+..+...|.+.|..|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555555544443 333444555555555565555544
No 368
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.67 E-value=44 Score=36.41 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Q 018679 289 RVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~---e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+..|+.||-.|++++..|+. +++.|+.|+.+|.+++.-|.
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln 214 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN 214 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 455667777777777766654 56667777777766655543
No 369
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=68.44 E-value=11 Score=33.10 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
...++++++++.|+.+...|..+++.++
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666777777777777777776654
No 370
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=68.22 E-value=11 Score=35.73 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++..|++++..|..|+..|+..+..+
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 33333344444444444444444444443
No 371
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.14 E-value=65 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
.++.++..++.++..|..++..|+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 372
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=68.12 E-value=56 Score=37.24 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=37.8
Q ss_pred hhHHHHHHHHH-HHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 254 QDERELKRQKR-KQSNRESARRSR------LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 254 ~DErE~KR~RR-k~~NRESARrSR------~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
..|.+...++| .+.||+=..+-| ++-+..++.-...|+.++.++.....+++.|++.+..|+.+...|..+..
T Consensus 369 ~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~ 448 (980)
T KOG0980|consen 369 ALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYD 448 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 466766655432 22222233333334555555555555666666666666665555555544
Q ss_pred Hh
Q 018679 327 RL 328 (352)
Q Consensus 327 ~l 328 (352)
++
T Consensus 449 di 450 (980)
T KOG0980|consen 449 DI 450 (980)
T ss_pred HH
Confidence 43
No 373
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.01 E-value=48 Score=33.99 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=34.6
Q ss_pred HHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 261 RQKRKQSNRESARRSRL---RKQAECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 261 R~RRk~~NRESARrSR~---RKq~~~eeLe~kv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|+...|-|--|+.|+ .+|.+.++|+.+-+.|..+.-..+. +...|+.-+..++.||..|..+|.++.
T Consensus 76 kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445566666665543 3444444444444444433322222 223444445566667777666666553
No 374
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=67.92 E-value=19 Score=37.87 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
+++|...++.|+.+|.+|+..+..|++.+..++.+.-+||.....+.-....+.+
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~ 462 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQ 462 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 4455555666666666666666666666666666666666655555444444433
No 375
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.79 E-value=25 Score=30.31 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
+..++.|+.+...++.+++.+...
T Consensus 107 ~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 107 EKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 376
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=67.79 E-value=18 Score=27.89 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+++|+.++..|+.|+..|+.++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667766666666666665443
No 377
>PLN02678 seryl-tRNA synthetase
Probab=67.76 E-value=42 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 299 NLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|..++..|++++..|+.+...|.++|..+
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554443
No 378
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.66 E-value=33 Score=38.46 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 281 AECEELQARVETLSNENRNLRD---------------------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~---------------------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
..+.++..++..+..||..|.. ++..|...++.++.||..|+-+|.-+.-.-.|++.+.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~ 171 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEER 171 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776665 3456666777777777777777777766556666665
Q ss_pred cCCC
Q 018679 340 SNPT 343 (352)
Q Consensus 340 ~~~~ 343 (352)
....
T Consensus 172 ~~~~ 175 (769)
T PF05911_consen 172 EYSR 175 (769)
T ss_pred HHhH
Confidence 5443
No 379
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.65 E-value=7.5 Score=40.66 Aligned_cols=40 Identities=38% Similarity=0.589 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++|..+|..|.++|..|+.+++.|+-.|..|..||+-|+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 4566777777777777777777777777777777776653
No 380
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.62 E-value=75 Score=31.35 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 251 QWIQDERELKRQKRKQSNR---------------ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 251 ~~~~DErE~KR~RRk~~NR---------------ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+.+.-|-++|..|.+.-.| ..++.--..-++.|+.|+.....|+...+.-+.++++.++.+..|.
T Consensus 138 dlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 138 DLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHhc
Q 018679 316 -------SENNSIKEDLSRLC 329 (352)
Q Consensus 316 -------~EN~~Lk~~L~~l~ 329 (352)
.|-..|.++|.++.
T Consensus 218 ~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 218 SVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred hcChHHHHHHHHHHHHHHHHH
No 381
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.51 E-value=46 Score=40.01 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.+++.++.+...+..++..+..++..++.+...|+
T Consensus 362 e~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 382
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=67.49 E-value=36 Score=27.68 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+++|...|..|.....+|...++.++.+.+....|+.+-.++|...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 445778888888888888888888888888888888888888887654
No 383
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=67.43 E-value=14 Score=38.49 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
++++-|++.+.+.|+..|..|..++++|+.++.
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~ 321 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSEAG 321 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHH
Confidence 344566666666667777777777766666654
No 384
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=67.42 E-value=8 Score=36.42 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+|+.+...|+.+++.|..++..|..|+..|+.++..+.-
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 3455555556666666666666666666655555555443
No 385
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.41 E-value=36 Score=29.09 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..++...+.....+.+|++.|.-.+.+|......|..+|.
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444
No 386
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=67.36 E-value=84 Score=29.36 Aligned_cols=26 Identities=12% Similarity=0.320 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 299 NLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.|..+|..++.+.+.-...+..|.-+
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333333
No 387
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.32 E-value=26 Score=39.21 Aligned_cols=65 Identities=35% Similarity=0.532 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHH
Q 018679 275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEE----------------------------CEKLTSENNSIKEDLS 326 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e----------------------------~~~L~~EN~~Lk~~L~ 326 (352)
++-+-.+++..|..+++.++.||..|+-++..|.++ +..|++|.++|+.-++
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445667889999999999999999888777664 3456666667666654
Q ss_pred H-hcCcchhhchhh
Q 018679 327 R-LCGPEAVANLEQ 339 (352)
Q Consensus 327 ~-l~g~~~~~~L~~ 339 (352)
+ |.||-.|+..+.
T Consensus 208 k~lpgpaa~a~mk~ 221 (769)
T PF05911_consen 208 KKLPGPAALAQMKN 221 (769)
T ss_pred ccCCChHHHHHhHH
Confidence 4 566666554443
No 388
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.31 E-value=24 Score=34.40 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
++..+++++..|.+|...|..++..++
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 389
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=67.17 E-value=26 Score=28.00 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
|...|..|..|++.|..++..+++++..++.+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666665554
No 390
>PHA03161 hypothetical protein; Provisional
Probab=67.00 E-value=37 Score=30.88 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
.-|.+-|+.+.+|+. .+|+..|..|..+.++.++|+..|..
T Consensus 42 ~t~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~ 82 (150)
T PHA03161 42 HTKKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKA 82 (150)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555554444443 55566666666666666666655544
No 391
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=67.00 E-value=16 Score=37.04 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 018679 289 RVETLSNENRNLRDELQRLSEE---CEKLTSENNSIKEDLS 326 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e---~~~L~~EN~~Lk~~L~ 326 (352)
.+..|.+||++|++|+..|+.+ ++.++.||..|+..+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555433 3455677776665543
No 392
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.87 E-value=81 Score=33.08 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.+-++++..|..+...|+.+...|..+-..|..+.+.|.++-..|.
T Consensus 133 ~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443333
No 393
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=66.86 E-value=67 Score=29.36 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 255 DERELKRQKRKQSNRESARRSRLRK-----QAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RK-----q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
-|.++.|.++-.+.|..++.+|.-- ..-.++|+.-+.-.+.|...+|.+|+.+.++
T Consensus 39 kEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNre 99 (159)
T PF04949_consen 39 KEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRE 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 3556667777778888888877422 1222334433333344555555554444433
No 394
>PRK10963 hypothetical protein; Provisional
Probab=66.86 E-value=17 Score=34.28 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 018679 296 ENRNLRDELQRLSEE 310 (352)
Q Consensus 296 EN~~Lr~el~~L~~e 310 (352)
+|..+..++..|.-.
T Consensus 69 ~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 69 ANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 395
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.82 E-value=29 Score=33.35 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECE-------KLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~-------~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
....|++++.+.+.|..|-..+..+|..+.+.+. +++.|..++++.+..++ +.+..|+..+|
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~--eey~~Lk~~in 98 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY--EEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3356677777777777776666666655555444 44455555555555555 34444444433
No 396
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.74 E-value=50 Score=38.21 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|+.|.++|..++..++.+...++.+...|+.++..++
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443
No 397
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=66.72 E-value=42 Score=26.09 Aligned_cols=43 Identities=7% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++++..++.+...+..++..|+.....++.+...|..+|.++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444
No 398
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=66.72 E-value=25 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L 307 (352)
|++++.|+++|..|+.+++.|
T Consensus 46 erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 46 ERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444
No 399
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.59 E-value=25 Score=29.70 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----cchhhchhhcC
Q 018679 304 LQRLSEECEKLTSENNSIKEDLSRLCG-----PEAVANLEQSN 341 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~g-----~~~~~~L~~~~ 341 (352)
+..-+.+...+...|..|..+|..... ...|..|+..+
T Consensus 39 Va~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 39 VADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777766542 34444554443
No 400
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.53 E-value=29 Score=32.50 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEE--CEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e--~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
.+..|++++..|+..+..+..+|..|..- +.+|..+...|+.++..++ +.|.++...++
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~--erl~~~k~g~~ 147 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR--ERLKNIKAGTN 147 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH--HHHHHHHHhcc
No 401
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.31 E-value=16 Score=35.85 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
.+.+|+.++..|+.+.++|+. +++|+.+.+....+....-.+|..+.+..
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 357788888888888888887 77777777666666666666667666654
No 402
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.20 E-value=13 Score=36.85 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhc
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQS 340 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~ 340 (352)
+++.|+.++..++.++..++.|...|+++|.++.. +..+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEV 52 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE
Confidence 34444444444444445555555556666665544 2333344333
No 403
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.15 E-value=49 Score=38.64 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
+.|..|.+++..+.++...|..+|.+.+.++..+. +..+++..+
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~--q~~~~i~eQ 308 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVR--QALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45777888888888887777777777777777665 455555443
No 404
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.12 E-value=51 Score=38.05 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++.+|+.+++.|......|..|-..|+..|..+
T Consensus 453 ~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~ 486 (1200)
T KOG0964|consen 453 AENTELKRELDELQDKRKELWREEKKLRSLIANL 486 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 405
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=66.08 E-value=10 Score=36.90 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCcchhhchhhcCCC
Q 018679 300 LRDELQRLSEECEKLTSENNSIKEDLS-------RLCGPEAVANLEQSNPT 343 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~-------~l~g~~~~~~L~~~~~~ 343 (352)
+-.+..+|+.++..|..|.+.|+.++. ++.|...--.|..++++
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G~~~~vpLsei~~a 269 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQGETVSVPLSEILDA 269 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCCCEeeccHHHHHHh
Confidence 334445555555555555555555543 45555544444444444
No 406
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.08 E-value=37 Score=37.41 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+..|+.++..|+.+...|..++..+.++++....++..|..+|.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 286 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLE 286 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544444444433333
No 407
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=66.00 E-value=27 Score=33.04 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..+|+.+.+++..|+.||..|++-...+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888877655443
No 408
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=65.99 E-value=44 Score=26.49 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
...+..|+..+..+..++..|+..++.+..+...|+.++.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555666666655554
No 409
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=65.75 E-value=19 Score=33.94 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
++|..++..+++|+..||+=|..-+++|.+|+.
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777888888888777777777666654
No 410
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=65.67 E-value=30 Score=37.40 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
.+++.||++++.|+.+..+|..++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777766655544
No 411
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.65 E-value=13 Score=37.05 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLS 294 (352)
Q Consensus 254 ~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le 294 (352)
+-|--+|..|-|+ +|+.+|-.. +..+|++|..++.+++
T Consensus 65 QKEV~iRHLkakL--kes~~~l~d-RetEI~eLksQL~RMr 102 (305)
T PF15290_consen 65 QKEVCIRHLKAKL--KESENRLHD-RETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3344444444333 344444333 3345666665554443
No 412
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=65.57 E-value=22 Score=32.90 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 286 LQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
|+.+.+.|+.++..|+.+...+++.+
T Consensus 116 l~~~~e~L~~e~~~L~~~~~~~~eDy 141 (170)
T PRK13923 116 LQEEEEKLSWENQTLKQELAITEEDY 141 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 413
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=65.20 E-value=13 Score=39.51 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchh
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLE 338 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~ 338 (352)
.+|++++..|.+.|..|.. .+.+.+.|...|+++|.+|.. +.....+.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~-------~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 52 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAE-------LLKAARDKLSKLKSQLEQLAQPPSTYGTFL 52 (512)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 3445555555555555544 445566666666666766654 33444444
No 414
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=65.18 E-value=65 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.++.....++.++.....|-.-=....+|+...+.||..|+..|..
T Consensus 13 ~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 13 QAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 333444444444444444444444445566667777778888777754
No 415
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=65.15 E-value=37 Score=32.07 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 298 RNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..++.++..++.+++.++.+...++.++..
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 134 (322)
T TIGR01730 105 DDAKAAVEAAQADLEAAKASLASAQLNLRY 134 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444444444444444444433
No 416
>PRK14156 heat shock protein GrpE; Provisional
Probab=65.13 E-value=15 Score=33.90 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018679 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
++.|+.+...|+.++.++..+++-++....+=++++.+.....-+.+|...+|
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlD 88 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLD 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 33333333333333333333333333333333333333333334444444333
No 417
>PHA03155 hypothetical protein; Provisional
Probab=65.13 E-value=9.2 Score=33.24 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 304 LQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
++.|..++.+|+.||..||.+|..-.+++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~ 38 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPE 38 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 56777778889999999999997754443
No 418
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.11 E-value=33 Score=31.64 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+.++..|+.....+...+..|+..+..|+.....|+.+...|....
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333
No 419
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.10 E-value=70 Score=30.26 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
|.+.+.|....++.++|..++..|+.+.+.|+-++..+++.--+....
T Consensus 105 en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k 152 (203)
T KOG3433|consen 105 ENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEK 152 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 334444455555556666666666666666666666665544333333
No 420
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=65.09 E-value=25 Score=36.83 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL----------QRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el----------~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
++|+-|..|-+-+-.++-+++.+|..|+.+...|++-| ..|++.+...+.+...|.++...|....
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq 474 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQ 474 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45555555544444566777777777777777776654 3456666666666666666666665443
No 421
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=65.08 E-value=2.1 Score=46.70 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 253 IQDERELKRQKRKQSNR-ES-ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NR-ES-ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
+.||-+.-|.+.-.-.| |+ +.++| +|.+.+..|.++|+.|+.+|..|...+..|.++
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEee 354 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYK-KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEE 354 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665554555433333 22 24444 577888888999999988887766655444443
No 422
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.07 E-value=34 Score=28.07 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=21.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 271 SARRSRLRKQ----AECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 271 SARrSR~RKq----~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
+-++-|.||. .+++.|..++..|..+|..|+.++.
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555554 4566677777777777777776653
No 423
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=65.04 E-value=28 Score=36.68 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+++.|+.-.+..+.|..+-+.-+.+|+++|..=+...
T Consensus 244 ~ee~tkrm~eqrkrer~e~~aareRI~aqiaadraer 280 (506)
T KOG2507|consen 244 TEENTKRMREQRKRERKEGTAARERILAQIAADRAER 280 (506)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 5666777777777777777788888888876644433
No 424
>PRK14161 heat shock protein GrpE; Provisional
Probab=65.00 E-value=29 Score=32.04 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
++++++|..++..+.++...+|++..
T Consensus 32 ~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 32 KAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 425
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.98 E-value=46 Score=36.96 Aligned_cols=62 Identities=27% Similarity=0.291 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 018679 272 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 333 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~ 333 (352)
+.++..-=|.+++..+.+++.++.....+..+|..+......|+.|+.+|+.+|..+...+.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34455555677888888999999999999999999999999999999999999998876555
No 426
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=64.85 E-value=18 Score=35.35 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=7.1
Q ss_pred cCCCCCCCC
Q 018679 88 VYAHPSMAT 96 (352)
Q Consensus 88 vyaHP~mp~ 96 (352)
+|+.-++|-
T Consensus 72 ~y~~esvPr 80 (289)
T COG4985 72 LYARESVPR 80 (289)
T ss_pred HHHhhcccH
Confidence 688888884
No 427
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=64.71 E-value=20 Score=35.53 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
-++.|+.++..|++||..|+.+++.|+.+++....=...+-.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~ 74 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAP 74 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777776666555544444333333
No 428
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.63 E-value=50 Score=33.35 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
++..|..-|...++++..|..|...|+.+|.++.|.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 334455566677777777777888888887777753
No 429
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=64.51 E-value=16 Score=38.88 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.++..|.++.+.|.+.....+.+|..|++++++|.
T Consensus 8 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 8 ATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777777777777777777666666654
No 430
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=64.48 E-value=1.1e+02 Score=27.78 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=21.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 262 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRD 302 (352)
Q Consensus 262 ~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~ 302 (352)
+.+....-+.|.+.+..-++...+.+.++...+.|-..+..
T Consensus 64 ~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 64 QGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVA 104 (181)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555444433
No 431
>PHA03011 hypothetical protein; Provisional
Probab=64.47 E-value=40 Score=29.05 Aligned_cols=46 Identities=26% Similarity=0.399 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLS-------EECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~-------~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+++|..+...|-.|-.-+..++..|. .++.-|++|..+||+.+..
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555444444444443 3444555566666555543
No 432
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=64.33 E-value=1.1e+02 Score=30.30 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018679 290 VETLSNENRNL 300 (352)
Q Consensus 290 v~~Le~EN~~L 300 (352)
+..++.+...+
T Consensus 212 l~~~~~~l~~~ 222 (423)
T TIGR01843 212 LGRLEAELEVL 222 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 433
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=64.25 E-value=34 Score=33.82 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+|.+++..|+.++..|..+...|++.+.++
T Consensus 229 isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~ 260 (279)
T KOG0837|consen 229 ISRLEDKVKTLKIYNRDLASELSKLKEQVAEL 260 (279)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 434
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.20 E-value=42 Score=34.65 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|..+..+|+.++..|.++...++.+...+...|-.+.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344444445555555555555555555555555544443
No 435
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=64.19 E-value=33 Score=35.51 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|..+..+|++++..|+++...++.+...+...|-.+.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34444445555555555555555555555544444443
No 436
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.07 E-value=35 Score=28.22 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.....|..++..|..+...|..+...|+.+|..+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555566666666666666554
No 437
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=64.00 E-value=20 Score=33.37 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018679 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
++..|+.++..|+.++.++..+++-++....+=++++.+.....-+.+|+..+
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpvi 96 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVI 96 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333333333333333333333333344443333
No 438
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.00 E-value=48 Score=26.47 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
++-+.++++.++.|+.+...+..|+..+-++...+..+-....+.+..+- +.+.++...
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~--~~v~~~g~~ 83 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVF--EAVADLGES 83 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHH
No 439
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=63.98 E-value=11 Score=32.93 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 303 ELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-++.|..++.+|+.||..||.+|..-.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3567778889999999999999998876
No 440
>PF15556 Zwint: ZW10 interactor
Probab=63.96 E-value=1e+02 Score=29.77 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=51.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+++..+.|.-.++..-.-+..+..|.....+++.+....+++++.|..|...|+.+...-+
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeq 175 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQ 175 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777888888888888898888888999999999999888776543
No 441
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=63.95 E-value=33 Score=34.78 Aligned_cols=6 Identities=50% Similarity=0.567 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018679 282 ECEELQ 287 (352)
Q Consensus 282 ~~eeLe 287 (352)
++.+|+
T Consensus 29 el~~lQ 34 (330)
T PF07851_consen 29 ELSKLQ 34 (330)
T ss_pred HHHHHH
Confidence 333333
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.82 E-value=82 Score=35.05 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++++++..|+.+-+....+|..|+++.+.|+.....|.+++++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 443
>PHA02109 hypothetical protein
Probab=63.79 E-value=20 Score=33.61 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|.+++-+|+.+++.|..|..+|+.+|..++++...-.
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~L 227 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRL 227 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777666666666666666555544433
No 444
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=63.57 E-value=16 Score=36.23 Aligned_cols=39 Identities=38% Similarity=0.588 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.|+.+++.|+.+...|+.++..++++...++.++.+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555555555666666666666666666666553
No 445
>COG4420 Predicted membrane protein [Function unknown]
Probab=63.44 E-value=39 Score=31.84 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..|..+|..|....-.++.|+..|++.|.++..
T Consensus 137 ~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~ 169 (191)
T COG4420 137 AALHEKLDELRLDLGYVRDELDDLRELLAEIEP 169 (191)
T ss_pred HHHHHHHHHHHHhcchhhhchHHHHHHHHHhCc
Confidence 344444444444444445555555555555443
No 446
>PLN02678 seryl-tRNA synthetase
Probab=63.30 E-value=34 Score=35.88 Aligned_cols=10 Identities=0% Similarity=-0.150 Sum_probs=3.7
Q ss_pred hhchhhcCCC
Q 018679 334 VANLEQSNPT 343 (352)
Q Consensus 334 ~~~L~~~~~~ 343 (352)
+..+...++.
T Consensus 101 l~~~~~~iPN 110 (448)
T PLN02678 101 LDAKLKTIGN 110 (448)
T ss_pred HHHHHHhCCC
Confidence 3333333333
No 447
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.27 E-value=25 Score=28.49 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 295 NENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.+...|..+...|+.++..|+.|...|.
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444443
No 448
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.17 E-value=21 Score=40.26 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+++|...+..+..+..+|--+++.|++....|..||..|.+++..+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666655
No 449
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=63.10 E-value=4.8 Score=42.66 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 303 ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
+|+.|++|+++|++|...|..++.+.+.......|+..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~~ 69 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKFG 69 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHhhhcCcEEEe
Confidence 55555555555555555555555555544444444443
No 450
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=63.10 E-value=16 Score=37.16 Aligned_cols=56 Identities=18% Similarity=0.362 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
..|..++..++.....|..++..+.+....+..++..|...|.+|..-..-.+|.+
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRI 195 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeE
Confidence 45667777777777777777777777777777777777778777765444444443
No 451
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.04 E-value=34 Score=37.03 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.-+..++..++.+-..|+.|+.+|+..+.|+..|+.+...|
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 452
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=63.01 E-value=45 Score=30.85 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
+++..|+.+|..|..++..|+.+...+..+-..|.
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333
No 453
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=62.98 E-value=1.1e+02 Score=32.65 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLR 301 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr 301 (352)
..+..++..++.++..|.
T Consensus 70 ~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 70 RSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 454
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=62.96 E-value=52 Score=34.66 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
..=+|+.++-++||.=..+|+.-+.....-++....
T Consensus 153 EnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEi 188 (558)
T PF15358_consen 153 ENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEI 188 (558)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444555555555555555444444444443333
No 455
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=62.93 E-value=44 Score=36.51 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+|.+.|......|+..+..|..++..|+++..........|...|.+
T Consensus 14 d~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 14 DQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333333333
No 456
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.86 E-value=47 Score=34.30 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
....|+..+..|.+++.+|..+...|+++|..+
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555556666666666666666666655
No 457
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=62.84 E-value=14 Score=37.34 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018679 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
|+.|+..|.+|..+|+.-++|+..|..-|++--.++++|. ..|..|+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLs--qTi~ELE 48 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLS--QTIRELE 48 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4556666666666666666666666555555444554444 3444443
No 458
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=62.75 E-value=62 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 304 LQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|-.++..|+.|...|..++..|+
T Consensus 56 ~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666655555554
No 459
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.61 E-value=30 Score=32.87 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018679 281 AECEELQARVETLSNENRNLRD---------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~---------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
++..+++.+++.|+.+-..|+. ++-.+++++.+++.|.++|+.++..|...-..+++
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti 197 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTI 197 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEE
No 460
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.45 E-value=41 Score=28.87 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
..|..+++.+..++..|+.....|+.+|.+++ +.|..|.+.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q--~~l~~ll~~ 114 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQ--AKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 44556666666666666666666666666665 445554443
No 461
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.43 E-value=37 Score=35.03 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 280 QAECEELQARVETLSNE------NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~E------N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.++++|+..+..|+.. -...+.++..|.+.+..|..+..+|+++|..|.
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444441 234556677777777777777777777777765
No 462
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.31 E-value=39 Score=32.75 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.-+|..++.+++-+..++.+...|..+++.|+.+.+.. |..|++++....
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44555555555555555555555555555555544444 444666555553
No 463
>PRK06835 DNA replication protein DnaC; Validated
Probab=62.27 E-value=68 Score=32.13 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018679 309 EECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 309 ~e~~~L~~EN~~Lk~~L~~l 328 (352)
..++.|+.++..|+++...|
T Consensus 65 ~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 65 ETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 464
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=62.23 E-value=70 Score=29.86 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.+.-|+|=.|.+ ++-..+++.|++++..|+.+|+.-.++++.|..=-++|
T Consensus 114 L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQL 163 (179)
T PF13942_consen 114 LSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQL 163 (179)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344444444443 34445666666666666666666665555555433333
No 465
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=62.14 E-value=41 Score=27.85 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018679 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
.+++|..+|..|.....+|...+..++...+....|-.+--++|-.+.--|-++.|.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~~~~~~~~~ 81 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLR 81 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
No 466
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=62.06 E-value=40 Score=33.25 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.++-....|..+.-+.-..|-++.+.+......+..+.+.|+.+...|+.+....+.++..|+..+...
T Consensus 173 l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 173 LSHEISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
No 467
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.03 E-value=75 Score=37.49 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 253 IQDERELKRQKRKQSNRES---ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 253 ~~DErE~KR~RRk~~NRES---ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++..++++.++..-+|+= ++..-....+.+.+++.+...|++++..|+.+++.+++....+..++..+-...+.|.
T Consensus 470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 468
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=62.02 E-value=25 Score=24.14 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
++-..|-.+.+.|+...++|+.+|+.|++-|.
T Consensus 1 adEqkL~sekeqLrrr~eqLK~kLeqlrnS~a 32 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQLKHKLEQLRNSCA 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 469
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=61.94 E-value=53 Score=26.14 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.+.+++...++..-..|+..+...+++...|...+..|..++..|. +.+..|.+
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls--~ql~rLs~ 70 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS--EQLERLSQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcC
No 470
>PRK14148 heat shock protein GrpE; Provisional
Probab=61.90 E-value=24 Score=33.15 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+..+-..++.+++.|+.+...|+.++..|+..+..+.+|..-++.++.+
T Consensus 31 ~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 31 GALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PRK14150 heat shock protein GrpE; Provisional
Probab=61.73 E-value=24 Score=32.93 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018679 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
...++++|+.++..|+. .|+.++.++..+++-++....+=++++.......-+.+|...+|.
T Consensus 39 ~~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~Dn 100 (193)
T PRK14150 39 ADARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDN 100 (193)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
No 472
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=61.59 E-value=1.5e+02 Score=28.07 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+.+..-.|=.+-..+-.+=-.+.+.++.++..|+......-.++..+...+..|..++..|..+|...
T Consensus 147 E~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 147 EEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=61.52 E-value=37 Score=34.67 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 280 QAECEELQARVETLSNENRNLRDE----------LQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~e----------l~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++++.|+.+++.|+.+..+|..+ +..|+++++.++.+..++++-+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 474
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=61.41 E-value=85 Score=36.44 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQ-ARVETLSNENRN-LRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe-~kv~~Le~EN~~-Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+|..+.++.++.|.-.+|-.++.+++.|.+| ++.+.|+.|-.+ -+.+-++++++..+-+.+.+.=++++..+.
T Consensus 441 e~e~~er~~~er~~~E~er~er~e~e~~er~Erer~er~erer~Erer~erEr~erer~erer~~r~e~er~~r~e 516 (1021)
T PTZ00266 441 EKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLE 516 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.27 E-value=31 Score=28.73 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
++.|+++++.|+.+...|..++..++.++..|+.+..++
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 476
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=61.14 E-value=22 Score=34.23 Aligned_cols=50 Identities=26% Similarity=0.506 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCcchhhchhhc
Q 018679 291 ETLSNENRNLRDELQRLSEECEKLTSEN---NSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN---~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
..+..||..|+.++..|+.++..|+.++ ..|++.|..+-.++.++.|...
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~Fs~~Qi~~lk~~ 66 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIFSEDQIRNLKNG 66 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHhcC
No 477
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=61.08 E-value=83 Score=25.07 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018679 271 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 271 SARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
..++.=.+=.+.++.|+++++.+..|...|..+.+.+.+..+........+-..+.++- +.+++|-++
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g--~~v~~l~~s 90 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG--ESVSELNSS 90 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHhcC
No 478
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=61.07 E-value=20 Score=30.42 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+...+..++..|++++.+|+.||..|+.-+.
T Consensus 71 ~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 71 SELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.04 E-value=42 Score=27.92 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++.-++.|+.....|..++..|.+++..+..+...|+..|..+..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 129 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 480
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.00 E-value=63 Score=36.38 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECE--------------------ELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~e--------------------eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
+|.+--.++.|.-.-..++|.|++.+ .|+.++.......+.|+.+.++|.+.++.++.||
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 018679 319 NSIKEDLSR 327 (352)
Q Consensus 319 ~~Lk~~L~~ 327 (352)
.+|...+.+
T Consensus 472 k~~~~~~~e 480 (861)
T PF15254_consen 472 KRLRKMFQE 480 (861)
T ss_pred HHHHHHHHH
No 481
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=60.83 E-value=77 Score=37.04 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.+.+....+.....-+.|+.......+.+..|+.+...++.+......++..++.+...++.+...|...|
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 482
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.81 E-value=94 Score=29.40 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 249 ~~~~~~DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+...+.+-+-.+.+--.+-.+-+.+.+++++ +++..+.-.+.-+..+.+|..++..|+.+.+.|+.|...+++
T Consensus 72 ps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e--~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 72 PSEAICDRKSVLQELESQLATGSQKKATLGE--SIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 483
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=60.80 E-value=60 Score=32.05 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE------NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~E------N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|++..-++ +.++++.-+|--.-+ .++..|+.++..|+.+ +..++....++......|+.++..|+.+|.+.
T Consensus 151 ~ekd~~i~~-~~~~~e~d~rnq~l~-~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~a 228 (264)
T PF07246_consen 151 EEKDQLIKE-KTQERENDRRNQILS-HEISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLEHELSDA 228 (264)
T ss_pred HHHHHHHHH-HhhchhhhhHHHHHH-HHHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
No 484
>PRK14143 heat shock protein GrpE; Provisional
Probab=60.76 E-value=23 Score=34.20 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++..++..|+.+...|+.++..|+.++.++.++..-+|.+..+
T Consensus 63 ~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 63 ADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=60.72 E-value=70 Score=29.24 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++..+++.+-+.|...-.||++.++.|...-..-......+..+|..++.....++.+...+...+..
T Consensus 127 l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 127 LNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=60.60 E-value=28 Score=34.91 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|+.|+...|=+...|-.++=....++-..-|..++..|++++..|-+|++.||+
T Consensus 287 e~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 287 EATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
No 487
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=60.48 E-value=1e+02 Score=25.92 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018679 269 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 269 RESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
..+.+-.+++.+ .+.++..+...+..|..|...+..-+.-...+...+.+|+.+..... +.|++...+.+
T Consensus 22 ~qs~~i~~L~a~--n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~--e~ik~~lk~d~ 91 (110)
T PF10828_consen 22 YQSQRIDRLRAE--NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERR--ESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCc
No 488
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.45 E-value=40 Score=27.88 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
....-+..|+.....|..++..|..+...|..+...|+.+|..+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=60.39 E-value=19 Score=30.93 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
.++..|.++..+|++||.-|+-+++.|-.-+.+..+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 490
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=60.31 E-value=39 Score=35.39 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCCCCCCcccCC
Q 018679 282 ECEELQARVETLSNENRNLRDELQR---------LSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEENS 352 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~---------L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~~~~~~~~~~ 352 (352)
.++-|++|++.|+.+...+...+.. ++.+++.|+.+...|++++.-|+ ..+.+|..............+
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~--~~l~~l~~~~~~~~~~~~~~~ 241 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLE--NMLEDLEDSESSSDQSSSSSS 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhccccCCCCCCCC
No 491
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=60.29 E-value=1.3e+02 Score=27.77 Aligned_cols=67 Identities=27% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 256 ErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+|.+..|+.+..++ .|-.++-+.|..+.+.|...-..|..+-..|......|......|...+...
T Consensus 70 E~E~~~~~~el~~~E------~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~ 136 (201)
T PF12072_consen 70 ERELKERRKELQRLE------KRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ 136 (201)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.22 E-value=61 Score=30.66 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 272 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+..-.--...+++..+++..++.+......++..+...+..|..+...+...|..|.
T Consensus 104 a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 104 AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
No 493
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.22 E-value=2.9 Score=35.59 Aligned_cols=44 Identities=39% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 018679 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 333 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~ 333 (352)
+..|+.+.-.|.+++..|..++..|+.|...|++++.+|.....
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~ 44 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEV 44 (118)
T ss_dssp ------------------------------------------HT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 494
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=60.20 E-value=23 Score=27.50 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018679 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.+|..++.-..-|+++...+ +..|-.|..+|+.++.+|.
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccc
No 495
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.12 E-value=42 Score=38.75 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018679 257 RELKRQKRKQSNRESARRS------RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 257 rE~KR~RRk~~NRESARrS------R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++++..|-|..==.+..++ +.-+...|++|+.+++.++.+...|...+..+...+..|..+...|+.+|....
T Consensus 418 ~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~- 496 (1041)
T KOG0243|consen 418 RDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN- 496 (1041)
T ss_pred HHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred cchhhchh
Q 018679 331 PEAVANLE 338 (352)
Q Consensus 331 ~~~~~~L~ 338 (352)
..+.++.
T Consensus 497 -~el~~~~ 503 (1041)
T KOG0243|consen 497 -KELESLK 503 (1041)
T ss_pred -HHHHHHH
No 496
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=60.06 E-value=1.4e+02 Score=27.23 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHH
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDE-LQRLSEECE-KLTSENNSIKEDLSR 327 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~e-l~~L~~e~~-~L~~EN~~Lk~~L~~ 327 (352)
.+|+.+...+-+.|.+.+..=.+...+.++++..-+.|-..++.+ .+.|..+.. +.......|+.-|.+
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~ 110 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQ 110 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=60.06 E-value=86 Score=29.57 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++.||.+..-+--+| +...++..--.=...|+.|-..|+.+|+.=+.....++.|+..+..+|.+
T Consensus 108 E~rhrr~i~eLe~EKr---kh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 108 EKRHRRTIQELEEEKR---KHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=60.03 E-value=94 Score=28.63 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 018679 255 DERELKRQKRKQSNRESARRSRLRKQ--------------------AECEELQARVETLSNENRNLRDELQRLSE----- 309 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RKq--------------------~~~eeLe~kv~~Le~EN~~Lr~el~~L~~----- 309 (352)
++.++.+.+....-|.+---...=++ ++++-|+.+.+.|..+..+|...+..+..
T Consensus 39 ~~~dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY 118 (175)
T PRK13182 39 TEEDLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY 118 (175)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018679 310 ECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
++.+=+.|...+..+|..|. +.|+.+++....
T Consensus 119 qll~hr~e~ee~~~~l~~le--~~~~~~e~~~~~ 150 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLE--ARLKKLEPIYIT 150 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHH--HHHHHHHhhccC
No 499
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.01 E-value=35 Score=34.05 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018679 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+....+-+.+.-...++.+.+++.++..|+.+...|+.+++....+...|+.+......+|..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 500
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=59.90 E-value=1e+02 Score=25.73 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018679 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 255 DErE~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.-.+++.+...+-..=..+-.--.+.......+++.-.........+|..|..++..|..+...|.+.|..+
T Consensus 34 e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 34 EEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!