Query 018680
Match_columns 352
No_of_seqs 124 out of 148
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 93.6 0.023 7.9E-07 43.5 1.5 62 248-316 5-67 (70)
2 2kz3_A Putative uncharacterize 91.1 0.21 7.2E-06 39.6 4.2 40 265-309 17-56 (83)
3 2i1q_A DNA repair and recombin 82.8 0.44 1.5E-05 44.1 1.7 59 250-315 3-61 (322)
4 3lda_A DNA repair protein RAD5 78.9 1.3 4.6E-05 43.4 3.7 62 250-316 81-142 (400)
5 1b22_A DNA repair protein RAD5 75.2 0.77 2.6E-05 38.2 0.7 62 251-317 24-85 (114)
6 2z43_A DNA repair and recombin 72.8 0.73 2.5E-05 43.1 0.0 57 251-314 13-69 (324)
7 1pzn_A RAD51, DNA repair and r 72.2 2.1 7.1E-05 40.8 3.0 59 251-316 36-94 (349)
8 1v5w_A DMC1, meiotic recombina 68.7 1.1 3.8E-05 42.4 0.3 59 251-314 26-84 (343)
9 3pzp_A DNA polymerase kappa; D 68.4 2.7 9.1E-05 42.8 3.0 51 252-312 340-390 (517)
10 4dez_A POL IV 1, DNA polymeras 66.8 1.1 3.8E-05 42.7 -0.2 40 252-296 180-219 (356)
11 3osn_A DNA polymerase IOTA; ho 66.0 2.8 9.7E-05 41.3 2.6 52 252-312 236-287 (420)
12 1t94_A Polymerase (DNA directe 61.4 4.3 0.00015 40.2 2.9 50 252-311 284-333 (459)
13 4f4y_A POL IV, DNA polymerase 56.5 4.3 0.00015 39.1 1.9 52 252-312 181-232 (362)
14 2aq4_A DNA repair protein REV1 54.9 4 0.00014 40.2 1.4 41 252-296 243-285 (434)
15 1jx4_A DNA polymerase IV (fami 54.1 4.1 0.00014 38.7 1.3 55 252-315 180-234 (352)
16 3bq0_A POL IV, DBH, DNA polyme 52.8 4.6 0.00016 38.4 1.4 55 252-315 181-235 (354)
17 3im1_A Protein SNU246, PRE-mRN 50.8 9.3 0.00032 36.0 3.2 54 251-311 158-211 (328)
18 1z3e_B DNA-directed RNA polyme 48.8 14 0.00047 28.4 3.3 36 266-306 22-57 (73)
19 3k4g_A DNA-directed RNA polyme 45.0 19 0.00064 28.7 3.6 38 266-308 25-62 (86)
20 3gqc_A DNA repair protein REV1 43.3 3.7 0.00013 41.8 -1.0 51 252-311 317-367 (504)
21 2q0z_X Protein Pro2281; SEC63, 40.2 22 0.00075 33.6 3.9 54 251-311 162-215 (339)
22 3gfk_B DNA-directed RNA polyme 33.9 18 0.0006 28.4 1.8 37 266-307 29-65 (79)
23 3mab_A Uncharacterized protein 31.4 12 0.00042 29.9 0.5 26 255-282 9-34 (93)
24 1coo_A RNA polymerase alpha su 29.5 32 0.0011 28.0 2.7 17 266-282 37-53 (98)
25 1u9l_A Transcription elongatio 29.1 34 0.0012 25.9 2.6 50 261-315 15-64 (70)
26 4ecq_A DNA polymerase ETA; tra 28.8 18 0.00061 35.6 1.3 54 252-314 255-309 (435)
27 3bqs_A Uncharacterized protein 27.5 16 0.00054 29.2 0.5 26 255-282 9-34 (93)
28 2f8v_T Telethonin; sarcomere, 22.3 19 0.00064 31.9 0.0 38 71-108 61-102 (167)
29 2va8_A SSO2462, SKI2-type heli 21.8 43 0.0015 34.1 2.6 48 254-311 661-708 (715)
30 3ukx_C Bimax2 peptide; arm rep 21.5 55 0.0019 20.8 2.1 18 4-21 9-26 (28)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=93.56 E-value=0.023 Score=43.52 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=51.0
Q ss_pred CCCceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc-ccCC
Q 018680 248 LEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK-CVMG 316 (352)
Q Consensus 248 L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt-Cvl~ 316 (352)
+.|++-.|++|+..-+ ++|.++||+||+|+..+ +++.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778887776644 89999999999997654 888999998 6899999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=91.07 E-value=0.21 Score=39.59 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=30.5
Q ss_pred hhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHh
Q 018680 265 HKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQH 309 (352)
Q Consensus 265 hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~H 309 (352)
-++|.++||.||+||+. .|+.+|.+++| +|-+.=-.+..|
T Consensus 17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~--ls~~~v~~l~r~ 56 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCG--LSYKALVALRRV 56 (83)
T ss_dssp HHHHHHTTCCCHHHHTT---SCHHHHHHHHT--CCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHh---CCHHHHHHHhC--CCHHHHHHHHHH
Confidence 47899999999999975 69999999995 565544444433
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.82 E-value=0.44 Score=44.12 Aligned_cols=59 Identities=25% Similarity=0.240 Sum_probs=44.7
Q ss_pred CceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018680 250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (352)
Q Consensus 250 DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (352)
+++..|++|+.. +-++|.++||+||+||+.+ ++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~~--~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGPS--TAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCHH--HHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCHH--HHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 456667755544 5699999999999999864 677888887 6788888888888887754
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.92 E-value=1.3 Score=43.45 Aligned_cols=62 Identities=24% Similarity=0.199 Sum_probs=50.2
Q ss_pred CceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018680 250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (352)
Q Consensus 250 DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~ 316 (352)
.++-+|+..|-.-..-++|.++||+||++|+. .++..|.++. |+|...=+.+++.|.+++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888555555669999999999999985 5889999998 68888888888888876653
No 5
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=75.16 E-value=0.77 Score=38.21 Aligned_cols=62 Identities=31% Similarity=0.329 Sum_probs=50.3
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCCC
Q 018680 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGN 317 (352)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~~ 317 (352)
+|.+|+..|-.-..-++|.++|++||++. ...++..|.++- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68888865444456799999999999976 456889999997 689999999999999877543
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.79 E-value=0.73 Score=43.08 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018680 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (352)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (352)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888867655 4489999999999999854 455677666 467766667777776654
No 7
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.18 E-value=2.1 Score=40.81 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=45.7
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018680 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (352)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~ 316 (352)
++.+|.+|+. ...++|.++||+||++++. .++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 4666664443 5679999999999999875 4788899988 57877778888888776543
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.68 E-value=1.1 Score=42.36 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=0.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018680 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (352)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (352)
++++|+.-|-.=..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|..+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 68899844444445589999999999999853 456666665 456665566666666543
No 9
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=68.35 E-value=2.7 Score=42.77 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=39.3
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (352)
|-+|-+||+.+. ++|...||+|++|+..+ +..|+..|| ...|....++|.-
T Consensus 340 V~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 555667886554 89999999999999985 457888886 4568877777753
No 10
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=66.79 E-value=1.1 Score=42.70 Aligned_cols=40 Identities=38% Similarity=0.504 Sum_probs=31.5
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCC
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGP 296 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~ 296 (352)
|..|-+||+.- -++|...||+|++|+.+ .+++.|++.||.
T Consensus 180 v~~l~GiG~~~--~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPKT--TKKLAAMGITTVADLAV---TDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCSHHHHHT---SCHHHHHHHHCH
T ss_pred HHHHcCCchhH--HHHHHHcCCCeeccccc---CCHHHHHHHhCC
Confidence 44555777654 48899999999999864 588999999973
No 11
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=65.96 E-value=2.8 Score=41.32 Aligned_cols=52 Identities=27% Similarity=0.312 Sum_probs=38.4
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (352)
|-.|-+||+. .-++|...||+|++|+.+ .+++.|++.||. +....+.+||.-
T Consensus 236 v~~l~GIG~~--t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~G 287 (420)
T 3osn_A 236 IKEIPGIGYK--TAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSFG 287 (420)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred HHHccCCCHH--HHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhcC
Confidence 4444566654 558999999999999876 478999999972 345667777753
No 12
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=61.41 E-value=4.3 Score=40.21 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=38.2
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (352)
|-+|-+||+.+ .++|...||+|++|+..+ +..|++.|| .+.|..+..+|+
T Consensus 284 v~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 66677788654 489999999999999874 357999986 445666767776
No 13
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=56.45 E-value=4.3 Score=39.07 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=37.9
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (352)
|..|-+||+. .-++|...||+|++|+.+ .+++.|++.|| .+....+..+|+-
T Consensus 181 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG----~~~g~~l~~~a~G 232 (362)
T 4f4y_A 181 IDEIPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITG----KAKALYLLKLAQD 232 (362)
T ss_dssp STTSTTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHC----HHHHHHHHHHHTT
T ss_pred hhhccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhC----hHHHHHHHHHhcC
Confidence 4444566765 448999999999999764 58899999997 2455566666653
No 14
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=54.85 E-value=4 Score=40.17 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=32.7
Q ss_pred eeeeeeecccchhhhhhhh--cCCccHHHHHHhhccChHHHHHHhCC
Q 018680 252 VWRLEKIGKDGAFHKKLSA--AGIKTVQDFLKLSIVEPQRLRKILGP 296 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~--~~I~tV~dFLkl~~~d~~kLr~iLg~ 296 (352)
|-.|-+||+ ..-++|.. .||+|++|+.+++ +++.|++.||.
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~ 285 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS 285 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH
Confidence 455556665 45589999 8999999999875 78899999973
No 15
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=54.06 E-value=4.1 Score=38.68 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=40.8
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (352)
|..|-+||+ ...++|...||+|++|+.+ .+++.|++.||. .....+..||.--+.
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEYN 234 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCCC
Confidence 556666775 4568999999999999875 688999999973 226667777764443
No 16
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=52.84 E-value=4.6 Score=38.39 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=40.9
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (352)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+.
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCCC
Confidence 455556665 4568999999999999875 688999999973 226677788874443
No 17
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=50.80 E-value=9.3 Score=35.96 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=42.5
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018680 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (352)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (352)
+..-|.+|+.+-+ ++|.++||.|++|+.. .+++++.++| +++++.-+.+.+-|.
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHH
Confidence 3556777877644 6799999999999966 4899999998 688888888777664
No 18
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=48.79 E-value=14 Score=28.40 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=24.7
Q ss_pred hhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHH
Q 018680 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVT 306 (352)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~ 306 (352)
.-|..+||+||+|+++. +++.|.++= |+-.|.-+.+
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki~--n~G~kSl~EI 57 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEV 57 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTST--TCCHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHcC--CCCHHHHHHH
Confidence 45889999999998874 667777763 3344444443
No 19
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=45.01 E-value=19 Score=28.69 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.8
Q ss_pred hhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHH
Q 018680 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQ 308 (352)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~ 308 (352)
.-|..+||+||+|++.. +++.|.++= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 45899999999998875 556666653 344555555544
No 20
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=43.32 E-value=3.7 Score=41.85 Aligned_cols=51 Identities=31% Similarity=0.477 Sum_probs=36.1
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018680 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (352)
|..|-+||+. .-++|...||+|++|+.+ .++..|++.||. +....+..+|.
T Consensus 317 V~~l~GIG~~--t~~kL~~lGI~TigDLa~---~~~~~L~~~fG~----~~g~~L~~~a~ 367 (504)
T 3gqc_A 317 VTNLPGVGHS--MESKLASLGIKTCGDLQY---MTMAKLQKEFGP----KTGQMLYRFCR 367 (504)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCBHHHHTT---SCHHHHHHHHCH----HHHHHHHHHTT
T ss_pred hhHhhCcCHH--HHHHHHHcCCCcHHHHHh---ccHHHHHHhhCh----hHHHHHHHHhc
Confidence 4455566654 458999999999999864 588999999973 22333445554
No 21
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=40.18 E-value=22 Score=33.59 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=42.1
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018680 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (352)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (352)
+..-|.+|+.+ .-++|.++||.|++||.. .+++++..+|| +++..-+.+.+-+.
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~ 215 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCN 215 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 45677788765 347899999999999875 68999999995 88877677766554
No 22
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=33.92 E-value=18 Score=28.37 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=24.4
Q ss_pred hhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHH
Q 018680 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTM 307 (352)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v 307 (352)
.-|..+||+||+|++. .+++.|.++= |+-.|.-+.+.
T Consensus 29 NcLk~agI~Tv~dL~~---~se~dLlki~--n~G~kSl~EI~ 65 (79)
T 3gfk_B 29 NCLKRAGINTVQELAN---KTEEDMMKVR--NLGRKSLEEVK 65 (79)
T ss_dssp HHHHHTTCCBHHHHTT---CCHHHHTTST--TCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHh---CCHHHHHHcC--CCCHhHHHHHH
Confidence 5599999999999876 4556666652 33444444443
No 23
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=31.36 E-value=12 Score=29.94 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=18.5
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHh
Q 018680 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKL 282 (352)
Q Consensus 255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl 282 (352)
|-+||+.-. +.|.+.||+||+||..+
T Consensus 9 LPNig~~~e--~~L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 9 LPNIGKVLE--QDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHHHH--HHHHHTTCCSHHHHHHH
T ss_pred CCCCCHHHH--HHHHHcCCCCHHHHHhC
Confidence 344444432 77999999999998765
No 24
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=29.51 E-value=32 Score=27.96 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred hhhhhcCCccHHHHHHh
Q 018680 266 KKLSAAGIKTVQDFLKL 282 (352)
Q Consensus 266 k~L~~~~I~tV~dFLkl 282 (352)
.-|..+||+||+|+++.
T Consensus 37 NcLkragI~Tv~dL~~~ 53 (98)
T 1coo_A 37 NCLKAEAIHYIGDLVQR 53 (98)
T ss_dssp HHHHTTTCCBHHHHHTS
T ss_pred HHHHHcCCCcHHHHHhC
Confidence 56899999999998875
No 25
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=29.12 E-value=34 Score=25.88 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=40.0
Q ss_pred cchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018680 261 DGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (352)
Q Consensus 261 dG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (352)
+-..-++|.++|++||++. .+.+++.|-.|- |+|...=+.+.+-|+..+.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 3345689999999999964 456888888886 6899999999998887654
No 26
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=28.82 E-value=18 Score=35.64 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=36.3
Q ss_pred eeeeeeecccchhhhh-hhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018680 252 VWRLEKIGKDGAFHKK-LSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (352)
Q Consensus 252 VwRLe~IgKdG~~hk~-L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (352)
|-.|-+||+. .-++ |...||+|++|+.. .++..|++.|| .+.-..+.+||+--+
T Consensus 255 v~~l~GiG~~--~~~~lL~~lGI~TigdLa~---~~~~~L~~~fG----~~~g~~L~~~a~G~d 309 (435)
T 4ecq_A 255 IRKIRSLGGK--LGASVIEILGIEYMGELTQ---FTESQLQSHFG----EKNGSWLYAMCRGIE 309 (435)
T ss_dssp GGGSTTCSSH--HHHHHHHHHTCCBGGGGGG---SCHHHHHHHHC----HHHHHHHHHHTTTCC
T ss_pred HHHhcCCCHH--HHHHHHHHcCCCcHHHHhh---CCHHHHHHHhC----ccHHHHHHHHhhCCC
Confidence 4445566643 3244 89999999999875 58899999997 334444556665433
No 27
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=27.47 E-value=16 Score=29.22 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=19.1
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHh
Q 018680 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKL 282 (352)
Q Consensus 255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl 282 (352)
|-+||+. .-+.|.+.||+||+||..+
T Consensus 9 LPNiG~~--~e~~L~~vGI~s~e~L~~~ 34 (93)
T 3bqs_A 9 LPNIGKV--LEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHH--HHHHHHHTTCCSHHHHHHH
T ss_pred CCCCCHH--HHHHHHHcCCCCHHHHHhC
Confidence 4445544 3377999999999998865
No 28
>2f8v_T Telethonin; sarcomere, titin, Z1Z2, contractIle protein-CONT protein complex; 2.75A {Homo sapiens}
Probab=22.34 E-value=19 Score=31.89 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=15.8
Q ss_pred cccCCccccc--cC--CCCceEEEEccCCCCCcccCCceeec
Q 018680 71 LTRSSSLRIQ--AL--EPSSLKLIFSQKLSLPIFTGSKITDV 108 (352)
Q Consensus 71 ~~rs~~~~~~--~~--~~~~~~L~F~n~l~~pifT~~~I~a~ 108 (352)
..|||...|. .. .-+.|||=|.|-|++||||-.++.+.
T Consensus 61 VQr~P~qvmrMG~~g~~lqEYqLPY~~~LPlPIFtPak~~~~ 102 (167)
T 2f8v_T 61 VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGAT 102 (167)
T ss_dssp EECCTTTEEEEEETTSCCEEEESSCCCC--------------
T ss_pred HHhChHHHhhhhhccccchhhccchhccCCccccchhhcCCc
Confidence 4677765542 22 23469999999999999999988743
No 29
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=21.81 E-value=43 Score=34.09 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=35.7
Q ss_pred eeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018680 254 RLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (352)
Q Consensus 254 RLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (352)
.|.+|+.. ..++|.++||.|++|+. .|+++|.+++| .+.-+.+++-|+
T Consensus 661 qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 661 QISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp TSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 34444443 44678899999999966 68999999995 777777777554
No 30
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=21.49 E-value=55 Score=20.75 Aligned_cols=18 Identities=44% Similarity=0.704 Sum_probs=10.4
Q ss_pred ccCCCCCCCCCCCccccC
Q 018680 4 KRFLNGSDPEEPPEKRTR 21 (352)
Q Consensus 4 Kr~~~~~~~~~~~~~r~~ 21 (352)
||.-+-.|+|.|..||+|
T Consensus 9 krkrewdddddppkkrrr 26 (28)
T 3ukx_C 9 KRKREWDDDDDPPKKRRR 26 (28)
T ss_dssp CCCCCCCCSSSCCSCCCC
T ss_pred HhhcccccCCCchhhhhc
Confidence 444443456677777764
Done!