BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018683
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8WFS8|PGAP3_DANRE Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3
PE=2 SV=1
Length = 316
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 154/290 (53%), Gaps = 14/290 (4%)
Query: 54 VGQKCFPHC-KFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHG 112
V + C HC + + GA + G + +P Y+ W C DCRY CM A G+
Sbjct: 24 VYRDCVKHCVRANCTGARLRG-FQSTQPPYMALTGWTCRDDCRYQCMWTTVGLYQAEGYS 82
Query: 113 PVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFS 172
++HGKWPF R +EPAS S+LN G +LL Y+ + Y+ +
Sbjct: 83 IPQFHGKWPFARFLCFEEPASALASLLN------GLACLLMLLRYRSAVPCQSPMYHTIT 136
Query: 173 PLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAAR 232
+ +S+N+WFWS VFH+RD LTEK DY A A++ +S+ L +R+ +R A
Sbjct: 137 A----FSLVSLNAWFWSTVFHTRDTYLTEKMDYFCASAVILYSIYLCCVRTLGLRRPAIS 192
Query: 233 VMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRH--PSRWKL 290
MV L+ T+H+ YL F DYG+NM + + LL W W + R P W+
Sbjct: 193 SMVGVLLILAFTSHVSYLTFVSFDYGYNMAANASIGIINLLWWLCWCWLNRRILPYWWRC 252
Query: 291 WVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 340
+VV LLE+ DFPP + LDAHA+WH +T+P+ ++++SF+ DD+
Sbjct: 253 GMVVLLLHGLALLELLDFPPLFWVLDAHAVWHLSTVPVHFLFYSFLIDDS 302
>sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis
GN=pgap3 PE=2 SV=1
Length = 316
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 150/302 (49%), Gaps = 32/302 (10%)
Query: 44 CVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCM---V 100
CV CE C G + + ++PLY++ W CL DCRY CM V
Sbjct: 27 CVTLCERNNCTGSRL--------------TDFRAEQPLYMRVTGWTCLDDCRYQCMWYTV 72
Query: 101 DREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLP 160
+K GH ++HGKWPF R QEPAS S LN G S +LL Y+
Sbjct: 73 SLYLKE---GHEVPQFHGKWPFSRFLFFQEPASALASFLN------GVASLLMLLRYRSS 123
Query: 161 LKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAI 220
+ + + Y + +S+N+WFWS +FH+RD LTEK DY A +++ S+ L
Sbjct: 124 VPSSCQMYRTCLA----FSMVSVNAWFWSTIFHTRDTALTEKMDYFCASSVILHSIYLCC 179
Query: 221 LRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAG 280
+R+F ++ + A L+ H+ YL + DY +NM V L+ W W
Sbjct: 180 MRTFGLQYPSIANGFGAFLVLLFACHVSYLTLGRFDYSYNMAANTGFGVLNLMWWLAWCF 239
Query: 281 ITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRD 338
R P WK +VV LLE+ DFPP LDAHA+WH +T+PL ++++SF++D
Sbjct: 240 RRRFHQPYLWKCVLVVISLQSLALLELLDFPPVMWILDAHALWHFSTVPLHFLFYSFLKD 299
Query: 339 DA 340
D+
Sbjct: 300 DS 301
>sp|A2A559|PGAP3_MOUSE Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3
PE=2 SV=1
Length = 320
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 157/305 (51%), Gaps = 38/305 (12%)
Query: 44 CVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCM---V 100
CV +CEE C G H F S ++P+Y+ W C DC+Y CM V
Sbjct: 32 CVLRCEERNCSGDA-LKH--FRS-----------RQPIYMSLAGWTCRDDCKYECMWFTV 77
Query: 101 DREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLP 160
++ GH ++HGKWPF R IQEPAS S+LN G S +L Y+
Sbjct: 78 GLYLQE---GHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLASLVMLCRYRAS 128
Query: 161 LKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLI 217
+ + SP++H + ++S+N+WFWS VFH+RD DLTEK DY A A++ S+
Sbjct: 129 VPAS-------SPMYHTCMAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASAVILHSVY 181
Query: 218 LAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWAT 277
L +R+ ++ + A LL +T HI YL+ DYG+NM V + + L W
Sbjct: 182 LCCVRTVGLQHPSVASAFGALLLLLLTGHISYLSLVHFDYGYNMMANVAIGLVNLAWWLV 241
Query: 278 WAGITRH--PSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSF 335
W R P + VVV LLE+ DFPP + LDAHAIWH +TIP+ +++ F
Sbjct: 242 WCLRNRQRLPHTRRCMVVVVLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHTLFFRF 301
Query: 336 IRDDA 340
+ DD+
Sbjct: 302 LEDDS 306
>sp|Q96FM1|PGAP3_HUMAN Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3
PE=2 SV=2
Length = 320
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 158/314 (50%), Gaps = 32/314 (10%)
Query: 44 CVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCMVDRE 103
CV QCEE C G ++N + ++P+Y+ W C DC+Y CM
Sbjct: 32 CVLQCEEQNC-------------SGGALNH-FRSRQPIYMSLAGWTCRDDCKYECMWVTV 77
Query: 104 IKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQ 163
GH ++HGKWPF R QEPAS S LN G S +L Y+ +
Sbjct: 78 GLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLN------GLASLVMLCRYRTFVPA 131
Query: 164 TKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAI 220
+ SP++H + ++S+N+WFWS VFH+RD DLTEK DY A ++ S+ L
Sbjct: 132 S-------SPMYHTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSIYLCC 184
Query: 221 LRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA- 279
+R+ ++ A A LL +T H+ YL+ + DYG+N+ V + + ++ W W
Sbjct: 185 VRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWLAWCL 244
Query: 280 -GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRD 338
R P K VVV LLE+ DFPP + LDAHAIWH +TIP+ +++SF+ D
Sbjct: 245 WNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLED 304
Query: 339 DAEFQTANMLKKAK 352
D+ + K K
Sbjct: 305 DSLYLLKESEDKFK 318
>sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3
PE=2 SV=1
Length = 317
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 150/302 (49%), Gaps = 32/302 (10%)
Query: 44 CVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCM---V 100
CV C++ C G + + Q+PLY++ W CL DCRY CM V
Sbjct: 27 CVTVCDQNNCTGFRL--------------RDFRAQQPLYMRLTGWTCLDDCRYKCMWYTV 72
Query: 101 DREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLP 160
+K GH ++HGKWPF R QEPAS S LN G S +L Y+
Sbjct: 73 SLYLKE---GHEVPQFHGKWPFSRFLFFQEPASALASFLN------GVASLLMLFRYRSS 123
Query: 161 LKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAI 220
+ + + Y + +S+N+WFWS +FH+RD LTEK DY A +++ S+ L
Sbjct: 124 VPSSCQMYRTCLA----FSMVSVNAWFWSTIFHTRDTALTEKMDYFCASSVILHSIYLCC 179
Query: 221 LRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAG 280
+R+F ++ + A L+ HI YL + DY +NM + L+ W W
Sbjct: 180 MRTFGLQYPSIANAFGAFLVLLFACHISYLTLGRFDYSYNMAANTSFGIVNLMWWLAWCM 239
Query: 281 ITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRD 338
R P WK +VV LLE+ DFPP LDAHA+WH +TIPL ++++SF+RD
Sbjct: 240 WRRFHQPYLWKCVLVVVLLQSLALLELLDFPPVMWILDAHALWHFSTIPLHFLFYSFLRD 299
Query: 339 DA 340
D+
Sbjct: 300 DS 301
>sp|A2V7M9|PGAP3_CRIGR Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus
GN=PGAP3 PE=2 SV=1
Length = 320
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 150/302 (49%), Gaps = 32/302 (10%)
Query: 44 CVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCMVDRE 103
CV +CEE C G H F S +P+Y+ W C DC+Y CM
Sbjct: 32 CVLRCEERNCSGDA-LKH--FRS-----------LQPIYMSLAGWTCRDDCKYECMWITV 77
Query: 104 IKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQ 163
GH ++HGKWPF R IQEPAS S+LN G S +L Y+ +
Sbjct: 78 GLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLASLVMLCRYRASVPA 131
Query: 164 TKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAI 220
+ SP++H + ++S+N+WFWS VFH+RD DLTEK DY A A++ S+ L
Sbjct: 132 S-------SPMYHTCMAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASAVILHSIYLCC 184
Query: 221 LRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA- 279
+R+ ++ + A LL + H YL+ + DY +NM V + + L W W
Sbjct: 185 VRTVGLQHPSVARAFGATLLLMLLLHTSYLSLVRFDYSYNMMANVAIGLVNLAWWLAWCL 244
Query: 280 -GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRD 338
R P K VV LLE+ DFPP + LDAHAIWH +TIP+ +++ F+ D
Sbjct: 245 RNHRRLPHTRKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFRFLED 304
Query: 339 DA 340
D+
Sbjct: 305 DS 306
>sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC823.07 PE=3 SV=1
Length = 331
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 159/318 (50%), Gaps = 35/318 (11%)
Query: 43 ACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCMVDR 102
+CV +C E C G SD + + PL L+ +WDC S+C Y C +
Sbjct: 35 SCVNRCIENKCHGNP--------SDTSKL--------PLDLKLFRWDCGSNCGYECEITA 78
Query: 103 EIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLK 162
E A +YHGKW FIRV+GIQE SV FS+LN +H++G + ++ +P +
Sbjct: 79 ENYFAAHNLPSQQYHGKWYFIRVFGIQELFSVFFSMLNFMIHYNG----YHIMRRCIPDE 134
Query: 163 QTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGF----SLIL 218
K W I G MN+W WS+VFH RD +TEK DY SA A + F +LIL
Sbjct: 135 HPAK---RLCLSWAIVG---MNAWVWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLIL 188
Query: 219 AILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATW 278
+ + ++ +A H+ YL+FY DYG+NMK V + + Q ++W +
Sbjct: 189 MLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLSFYSFDYGYNMKANVAVGLVQNILWYYY 248
Query: 279 AGITRHP----SRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWS 334
+ R+ +RW ++V LA LE++DF P +DAHA+WH +T+P+T+ +
Sbjct: 249 SWSNRNSGLYWTRWPAYIVT-SLMLATSLELFDFSPIANLIDAHALWHLSTVPITHYLYG 307
Query: 335 FIRDDAEFQTANMLKKAK 352
F+ + K K
Sbjct: 308 FVVRKCSYDLTKGTFKIK 325
>sp|A7YWP2|PGAP3_BOVIN Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3
PE=2 SV=1
Length = 319
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 150/310 (48%), Gaps = 25/310 (8%)
Query: 44 CVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNCMVDRE 103
CV +CEE C G GA + + ++P+Y+ W C DC+Y CM
Sbjct: 32 CVLRCEERNCSG------------GALKH--FRSRQPIYMSLAGWTCRDDCKYECMWVTV 77
Query: 104 IKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQ 163
G ++HGKWPF R QEPAS S LN G S +L Y+ +
Sbjct: 78 GLYLQEGQKVPQFHGKWPFSRFLCFQEPASAVASFLN------GLASLVMLCRYRTSVPA 131
Query: 164 TKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRS 223
+ Y P + ++S+N+WFWS VFH+RD DLTEK DY A ++ S+ L +R+
Sbjct: 132 SSPMY----PTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSIYLCCVRT 187
Query: 224 FNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAG-IT 282
++ A A LL +T H+ YL+ DYG+NM V + + W W
Sbjct: 188 VGLQHPAMASAFRALLLLLLTAHVSYLSLIHFDYGYNMAANVAIGLLNAAWWLAWCLWNQ 247
Query: 283 RHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDAEF 342
R P K VV LLE+ DFPP + LDAHAIWH +TIP+ +++SF+ DD+ +
Sbjct: 248 RLPHVHKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDSLY 307
Query: 343 QTANMLKKAK 352
K K
Sbjct: 308 LLKESEAKVK 317
>sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster
GN=CG3271 PE=1 SV=2
Length = 326
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 147/298 (49%), Gaps = 25/298 (8%)
Query: 41 FWACVKQCEETGCVGQKCFPHCKFSSDGASIN--GPWYMQEPLYLQWKKWDCLSDCRYNC 98
F C + CE T C S+DG I + Q+ ++ + +W C +C+Y C
Sbjct: 31 FHNCRQNCERTNC-----------SADGLEIQEQAVKFYQQSVFDRLFQWSCADECQYGC 79
Query: 99 MVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYK 158
M G +++GKWPF+R+ G+QEPASV FS LN +H +L ++
Sbjct: 80 MWRTVFAFFERGWPIPQFYGKWPFLRLLGMQEPASVIFSCLNFVVHLR------LLRKFR 133
Query: 159 LPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLIL 218
++ Y L HI+ S+N W WSA+FH+RD LTE DY+ A +++ SL +
Sbjct: 134 REVRPDSPCYM----LTHIFAVTSLNGWIWSAIFHTRDFPLTELLDYAFAYSIILCSLYV 189
Query: 219 AILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATW 278
++R + R ++ L++ + YL+ + +Y +NM V V V + W W
Sbjct: 190 MVMRMLHRYSLFLRGVITLAFLSYYINYFAYLSVGRFNYAFNMMVNVATGVIAAVGWFVW 249
Query: 279 AGI--TRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWS 334
TR P ++ ALAM LE+ DFPP LDAHA+WH TIPL +++
Sbjct: 250 CHFVRTRRPYFRRILRFYILMALAMSLELLDFPPILWILDAHALWHLATIPLASLYYE 307
>sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PER1 PE=1 SV=1
Length = 357
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 147/335 (43%), Gaps = 48/335 (14%)
Query: 40 QFWACVKQCEETGCVGQKCFPHCKFSSDGASING----PWYMQEPLYLQWKKWDCLSDCR 95
+F C CE ++C P+ + + N ++ PLY + WDC+SDC
Sbjct: 26 EFIDCTYACE----YNRRC-PNSQINYIDPETNMFHDIEFFDTPPLYSKLLFWDCISDCD 80
Query: 96 YNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILL 155
Y C R ++HGKWPF+RV G QE S FS+ N H+ G++ F
Sbjct: 81 YQCQHIITRWRIDEEEEIYQFHGKWPFLRVLGTQEFFSTIFSIGNFIPHYKGFVKF---- 136
Query: 156 YYKLPLKQTKKAYYEFSPLWHIYGFL-----SMNSWFWSAVFHSRDVDLTEKFDY--SSA 208
+++ + S I+ +L M +W S+VFH RD+ +TEK DY +
Sbjct: 137 --SRIIREEGDRRRKNSRSILIWNYLYVTVAGMLAWTASSVFHCRDLIITEKLDYFFAGL 194
Query: 209 VALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMA 268
L GF I A + S + + A+ A+ + A HIL L + Y +NM+ +
Sbjct: 195 TVLTGFHAIFARMTSMFLYPKIAQAFTAS-VAAIFALHILRL-YVDWSYTYNMRFNIFFG 252
Query: 269 VAQLLIWATWAGITRHPSR--------------------WKLWVV----VFGGALAMLLE 304
V Q ++ + H + +KL V+ V +AM LE
Sbjct: 253 VLQYILLIMLSCQNYHALQKQKLMGEFKKTAYSSFKRQIFKLCVIPILLVIVTTMAMSLE 312
Query: 305 IYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDD 339
++DF Y +DAHA+WH TI +++ + F +D
Sbjct: 313 LFDFFSYEWQIDAHALWHLCTIWPSWVLYDFFLED 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.140 0.497
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,608,565
Number of Sequences: 539616
Number of extensions: 5505457
Number of successful extensions: 12154
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12107
Number of HSP's gapped (non-prelim): 15
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)