HDA2 protein (Arabidopsis thaliana)

STRING 9.05

HDA2 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	HDA2	HDA2; histone deacetylase; Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins. ; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity) (387 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ZW18	ZW18; ZW18; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion; CONTAINS InterP [...] (794 aa)		•	0.748
	ELO3	ELO3 (ELONGATA 3); histone acetyltransferase; Histone acetyltransferase (By similarity). Part o [...] (565 aa)		•	0.679
	HAC5	HAC5; H3/H4 histone acetyltransferase/ histone acetyltransferase; Encodes an enzyme with histon [...] (1670 aa)		•	0.677
	GTE2	GTE2 (Global transcription factor group E 2); DNA binding; This gene is predicted to encode a b [...] (678 aa)		•	0.536
	HAC12	HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histon [...] (1706 aa)		•	0.505
	GTE7	GTE7 (Global transcription factor group E 7); DNA binding; This gene is predicted to encode a b [...] (590 aa)		•	0.502
	HAC4	HAC4 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 4); histone acetyltransferase; HAC4 is most l [...] (1456 aa)		•	0.502
	HAG2	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone ac [...] (467 aa)		•	0.501
	ATBET9	ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding; Arab [...] (688 aa)	•	•	0.492
	ATRX	ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding; ATRX; FUNCTIONS IN- helicase [...] (1479 aa)		•	0.468

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: very high (>100%)

Permalink