BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018685
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L NC + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYNCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 16 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 67
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 68 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 126
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 127 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 184
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 185 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 244
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 245 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 300
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 301 ILGGGGYNLANTAR 314
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 22/265 (8%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C + + +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAA 114
Query: 137 VGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
+GG + A G AIN GG+HH DE GFC D L I ++ R+
Sbjct: 115 IGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERI 172
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVV 244
+ +DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF 304
G +Y + + L+ F+P+ V+ G D + GDP+ ++P GI K
Sbjct: 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCL 288
Query: 305 RFARSRNIPIVMLTSGGY-MKSSAR 328
++ + ++L GGY + ++AR
Sbjct: 289 KYILQWQLATLILGGGGYNLANTAR 313
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYECPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 36/317 (11%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ-----SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA 144
+ H+++YL+ LQ + IE L P + ++ + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCP----ATEGIFDYAAAIGGATITA 122
Query: 145 KLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH 201
G AIN GG+HH DE GFC D L I ++ R++ +DLD H
Sbjct: 123 AQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLH 180
Query: 202 QGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEY 252
G+G E FS S+V + + F+PG +P + R+ V + G +Y
Sbjct: 181 HGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKY 240
Query: 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNI 312
+ + L+ F+P+ V+ G D + GDP+ ++P GI K ++ +
Sbjct: 241 YQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQL 296
Query: 313 PIVMLTSGGY-MKSSAR 328
++L GGY + ++AR
Sbjct: 297 ATLILGGGGYNLANTAR 313
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 36/317 (11%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ-----SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA 144
+ H+++YL+ LQ + IE L P + ++ + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCP----ATEGIFDYAAAIGGATITA 122
Query: 145 KLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH 201
G AIN GG+HH DE GFC D L I ++ R++ +DLD H
Sbjct: 123 AQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLH 180
Query: 202 QGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEY 252
G+G E FS S+V + + F+PG +P + R+ V + G +Y
Sbjct: 181 HGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKY 240
Query: 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNI 312
+ + L+ F+P+ V+ G D + GDP+ ++P GI K ++ +
Sbjct: 241 YQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQL 296
Query: 313 PIVMLTSGGY-MKSSAR 328
++L GGY + ++AR
Sbjct: 297 ATLILGGGGYNLANTAR 313
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYACPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 138/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GG+ + ++AR
Sbjct: 300 ILGGGGFNLANTAR 313
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+H DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHAAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 18/256 (7%)
Query: 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
K HP + + +F + +D+ +++ A+KE+LL+ H+E Y+ +L + +
Sbjct: 19 KNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCV 78
Query: 112 ----IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADE 167
E + + N V + G T+ A + + A N GG HH
Sbjct: 79 PKGAREKYNIGGYENP-VSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSR 137
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIY 227
GFC + ++ I Y + R++ IDLDAH +G ++ F +V++L + Y
Sbjct: 138 ANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEY 196
Query: 228 PRDYEARRFIDQ-----------KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNA 276
+E + F+++ + + G NE+L L+++LE+ F+PE+ +
Sbjct: 197 AFPFE-KGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQL 255
Query: 277 GTDILEGDPLGMLKIS 292
GTD L D L +S
Sbjct: 256 GTDPLLEDYLSKFNLS 271
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 18/256 (7%)
Query: 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
K HP + + +F + +D+ +++ A+KE+LL+ H+E Y+ +L + +
Sbjct: 19 KNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERSQSV 78
Query: 112 ----IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADE 167
E + + N V + G T+ A + + A N GG HH
Sbjct: 79 PKGAREKYNIGGYENP-VSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSR 137
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIY 227
GFC + ++ I Y + R++ IDLDAH +G ++ F +V++L + Y
Sbjct: 138 ANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEY 196
Query: 228 PRDYEARRFIDQ-----------KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNA 276
+E + F+++ + + G NE+L L+++LE+ F+PE+ +
Sbjct: 197 AFPFE-KGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQL 255
Query: 277 GTDILEGDPLGMLKIS 292
GTD L D L +S
Sbjct: 256 GTDPLLEDYLSKFNLS 271
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 124/312 (39%), Gaps = 33/312 (10%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDY 66
Query: 99 LKSLQ-----------SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ LQ S N + + PV FP L + Y G T L K+
Sbjct: 67 IDFLQRVSPTNMQGFTKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNKIC 123
Query: 148 KERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G +
Sbjct: 124 D---IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQ 178
Query: 208 KDFSSDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE 258
+ F RV + + F PG +Y E+ R+ V + G Y
Sbjct: 179 EAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQP 238
Query: 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318
+ + P ++ G D L D LG +S G + + +S NIP+++L
Sbjct: 239 VINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLVLG 294
Query: 319 SGGY-MKSSARV 329
GGY +++ AR
Sbjct: 295 GGGYTVRNVARC 306
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 119/286 (41%), Gaps = 17/286 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 2 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 61
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 62 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 121
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 122 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 179
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y + +
Sbjct: 180 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDE--KTF 304
+ P V+ G D L GD LG ++ G A E KTF
Sbjct: 240 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTF 285
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 118/274 (43%), Gaps = 20/274 (7%)
Query: 63 RICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPP-VALFP 121
R + + + G ++ + + A+ D+L HS ++L++++ N+ + + +
Sbjct: 45 RFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMG 104
Query: 122 NCLVQRKVLYPFRKQVGGTI-LAAKLAK---ERGWAINVGGGFHHCSADEGGGFCAYADI 177
N ++ R GG + L ++A G+A+ V HH + GFC + +
Sbjct: 105 NGGLEIA-----RLSAGGAVELTRRVATGELSAGYAL-VNPPGHHAPHNAAMGFCIFNNT 158
Query: 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRD--YEARR 235
S+ YA L + RV I+D D H GNG + + +D V + + +P D Y R
Sbjct: 159 SVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTER 218
Query: 236 FIDQ------KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGML 289
V + G+ YL +D+ + A + P+L+I +G D DPL +
Sbjct: 219 GAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARM 278
Query: 290 KISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
++ DG +T A + IV + GGY
Sbjct: 279 MVTADGFRQMARRTIDCAADICDGRIVFVQEGGY 312
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 118/274 (43%), Gaps = 20/274 (7%)
Query: 63 RICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPP-VALFP 121
R + + + G ++ + + A+ D+L HS ++L++++ N+ + + +
Sbjct: 51 RFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMG 110
Query: 122 NCLVQRKVLYPFRKQVGGTI-LAAKLAK---ERGWAINVGGGFHHCSADEGGGFCAYADI 177
N ++ R GG + L ++A G+A+ V HH + GFC + +
Sbjct: 111 NGGLEIA-----RLSAGGAVELTRRVATGELSAGYAL-VNPPGHHAPHNAAMGFCIFNNT 164
Query: 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRD--YEARR 235
S+ YA L + RV I+D D H GNG + + +D V + + +P D Y R
Sbjct: 165 SVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTER 224
Query: 236 FIDQ------KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGML 289
V + G+ YL +D+ + A + P+L+I +G D DPL +
Sbjct: 225 GAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARM 284
Query: 290 KISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
++ DG +T A + IV + GGY
Sbjct: 285 MVTADGFRQMARRTIDCAADICDGRIVFVQEGGY 318
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 89/384 (23%), Positives = 144/384 (37%), Gaps = 66/384 (17%)
Query: 14 ETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFL------GIEKLHPFDSSKWGRICQF 67
E + R+LSS + P LP YD L G HP + + I
Sbjct: 18 EPASQARVLSSS---ETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSR 74
Query: 68 LSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQR 127
L G + + +AS E+L VHSE ++ ++P + ++ +A L QR
Sbjct: 75 LQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLA---GLLAQR 131
Query: 128 K-VLYPF-------------------RKQVGGTI--LAAKLAK---ERGWAINVGGGFHH 162
V+ P + G++ LA K+A + G+A+ G HH
Sbjct: 132 MFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HH 190
Query: 163 CSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM- 221
GFC + +++ Q S+++I+D D H GNG ++ F D V + +
Sbjct: 191 ADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLH 250
Query: 222 ------FNPGIYPRD---YEARRFIDQKVEVVSG----TTTNEYLKKLDEALEVAGHTFD 268
F PG D + + V G EYL + F
Sbjct: 251 RHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFS 310
Query: 269 PELVIYNAGTDILEGD--PLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS 326
P+LV+ +AG D EG PLG +S ++ A +V+ GG+ ++
Sbjct: 311 PDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGG---AVVLALEGGHDLTA 367
Query: 327 ---------ARVIANSVENLSRKG 341
A ++ N V+ LS +G
Sbjct: 368 ICDASEACVAALLGNRVDPLSEEG 391
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 116/316 (36%), Gaps = 51/316 (16%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRVYILDM-------FNPGIYPRD---------YEARRFIDQKVEVVSGTT 248
G ++ F SD V + + F PG D + ++ G
Sbjct: 202 GTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDA 261
Query: 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEG--DPLGMLKISPDGIAARDEKTFRF 306
EYL + F P++V+ ++G D +EG PLG +S ++
Sbjct: 262 --EYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGL 319
Query: 307 ARSRNIPIVMLTSGGY 322
A R IV+ GGY
Sbjct: 320 AGGR---IVLALEGGY 332
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 116/316 (36%), Gaps = 51/316 (16%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRVYILDM-------FNPGIYPRD---------YEARRFIDQKVEVVSGTT 248
G ++ F SD V + + F PG D + ++ G
Sbjct: 202 GTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDA 261
Query: 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEG--DPLGMLKISPDGIAARDEKTFRF 306
EYL + F P++V+ ++G D +EG PLG +S ++
Sbjct: 262 --EYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGL 319
Query: 307 ARSRNIPIVMLTSGGY 322
A R IV+ GGY
Sbjct: 320 AGGR---IVLALEGGY 332
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 116/316 (36%), Gaps = 51/316 (16%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRVYILDM-------FNPGIYPRD---------YEARRFIDQKVEVVSGTT 248
G ++ F SD V + + F PG D + ++ G
Sbjct: 202 GTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDA 261
Query: 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEG--DPLGMLKISPDGIAARDEKTFRF 306
EYL + F P++V+ ++G D +EG PLG +S ++
Sbjct: 262 --EYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGL 319
Query: 307 ARSRNIPIVMLTSGGY 322
A R IV+ GG+
Sbjct: 320 AGGR---IVLALEGGH 332
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 116/316 (36%), Gaps = 51/316 (16%)
Query: 49 GIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN- 107
G HP + + I L G K + +A+ E+L VHSE++ ++P
Sbjct: 26 GSSSSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPLN 85
Query: 108 -------------VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAI 154
S+ + +P + V ++ G LA E + +
Sbjct: 86 RQKLDSKKLLGSLASVFVRLPCGGVG----VDSDTIWNEVHSAGAARLAVGCVVELVFKV 141
Query: 155 NVG---GGF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G GF HH GFC + +++ +L++S+++I+D D H GN
Sbjct: 142 ATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGN 201
Query: 205 GHEKDFSSDSRVYILDM-------FNPGIYPRD---------YEARRFIDQKVEVVSGTT 248
G ++ F SD V + + F PG D + ++ G
Sbjct: 202 GTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDA 261
Query: 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEG--DPLGMLKISPDGIAARDEKTFRF 306
EYL + F P++V+ ++G D +EG PLG +S ++
Sbjct: 262 --EYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGL 319
Query: 307 ARSRNIPIVMLTSGGY 322
A R IV+ GG+
Sbjct: 320 AGGR---IVLALEGGH 332
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 161 HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILD 220
HH D GGFC + ++ ++ +RV ++D D H G G ++ F + V +
Sbjct: 177 HHARVDAAGGFCYLNNAAIAA--QALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVS 234
Query: 221 M------FNPGIYPRDYE--ARRFIDQKVE--VVSGTTTNEYLKKLDEALEVAGHTFDPE 270
+ F P + D E A + V + G++ + +++D+AL F P+
Sbjct: 235 IHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALREL-RRFAPD 293
Query: 271 LVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVI 330
++ + G D+ DP + ++ DG + + +P V++ GGY S
Sbjct: 294 ALVLSLGFDVYRDDPQSQVAVTTDGFG----RLGHLIGALRLPTVIVQEGGYHIESLEAN 349
Query: 331 ANS 333
A S
Sbjct: 350 ARS 352
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 125/337 (37%), Gaps = 67/337 (19%)
Query: 37 LIYSPDYDI-----SFLGIEKLHPFDS---SKWGRICQFLSSEGFLDKNCIVEPLEASKE 88
+I+S D+ + G E + PF++ ++W I + GF D +V P E
Sbjct: 3 VIFSEDHKLRNAKTELYGGELVPPFEAPFRAEW--ILAAVKEAGFDD---VVAPARHGLE 57
Query: 89 DLLVVHSESYLKSLQSSPNVSIIIEVPPVAL---FPNCLVQRKVLYPFRKQVGGTILAAK 145
+L VH YL L+++ + A+ FP ++ Q+G AA+
Sbjct: 58 TVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAE 117
Query: 146 LAKERG-W---------AIN----VGGGF-----------HHCSADEGGGFCAYADISLC 180
A G W AI+ + G HH D GG+C + ++
Sbjct: 118 TAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVA 177
Query: 181 IHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEA-RRFIDQ 239
+ ++ I+D+D H GNG + F D+F ++ EA F+
Sbjct: 178 AQR-LLDKGAKKIAILDVDFHHGNGTQDIFYERG-----DVFFASLHGDPAEAFPHFLGY 231
Query: 240 KVEVVSGT---TTNEYLKKLDEALEVAGH----------TFDPELVIYNAGTDILEGDPL 286
E G TT Y V G F E ++ + G D E DP+
Sbjct: 232 AEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPI 291
Query: 287 GMLKI-SPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322
K+ SPD I R + +P++++ GGY
Sbjct: 292 SFFKLTSPDYITMG-----RTIAASGVPLLVVMEGGY 323
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 124/337 (36%), Gaps = 67/337 (19%)
Query: 37 LIYSPDYDI-----SFLGIEKLHPFDS---SKWGRICQFLSSEGFLDKNCIVEPLEASKE 88
+I+S D+ + G E + PF++ ++W I + GF D +V P E
Sbjct: 3 VIFSEDHKLRNAKTELYGGELVPPFEAPFRAEW--ILAAVKEAGFDD---VVAPARHGLE 57
Query: 89 DLLVVHSESYLKSLQSSPNVSIIIEVPPVAL---FPNCLVQRKVLYPFRKQVGGTILAAK 145
+L VH YL L+++ + A+ FP ++ Q+G AA+
Sbjct: 58 TVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAE 117
Query: 146 LAKERG-W---------AIN----VGGGF-----------HHCSADEGGGFCAYADISLC 180
A G W AI+ + G H D GG+C + ++
Sbjct: 118 TAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHAAGIDMFGGYCFINNAAVA 177
Query: 181 IHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEA-RRFIDQ 239
+ ++ I+D+D H GNG + F D+F ++ EA F+
Sbjct: 178 AQR-LLDKGAKKIAILDVDFHHGNGTQDIFYERG-----DVFFASLHGDPAEAFPHFLGY 231
Query: 240 KVEVVSGT---TTNEYLKKLDEALEVAGH----------TFDPELVIYNAGTDILEGDPL 286
E G TT Y V G F E ++ + G D E DP+
Sbjct: 232 AEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPI 291
Query: 287 GMLKI-SPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322
K+ SPD I R + +P++++ GGY
Sbjct: 292 SFFKLTSPDYI-----TMGRTIAASGVPLLVVMEGGY 323
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD WG +F +S G ++ +DL V + + K++ ++++V
Sbjct: 294 PFDQDDWGAWQKFTASAG----------IQVVGDDLTVTNPKRIAKAVNEKSCNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V ++ A KLA+ GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTESLQACKLAQANGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD WG +F +S G ++ +DL V + + K++ ++++V
Sbjct: 295 PFDQDDWGAWQKFTASAG----------IQVVGDDLTVTNPKRIAKAVNEKSCNCLLLKV 344
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V ++ A KLA+ GW + V H S + F A
Sbjct: 345 NQIG-----------------SVTESLQACKLAQANGWGVMV----SHRSGETEDTFIAD 383
Query: 175 ADISLC 180
+ LC
Sbjct: 384 LVVGLC 389
>pdb|2P2Z|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P2Z|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGMKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2ENU|A Chain A, Mutant L121m Structure Of Tthb049 From Thermus
Thermophilus Hb8
pdb|2ENU|B Chain B, Mutant L121m Structure Of Tthb049 From Thermus
Thermophilus Hb8
Length = 177
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFMEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 216 VYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTF 267
V I D++ G++P+ E Q + TT+E K LD+A E + F
Sbjct: 118 VPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDF 169
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 216 VYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
V I D++ G++P+ E Q + TT+E K LD+A E
Sbjct: 118 VPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASE 163
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD W +F ++ G ++ +DL V + + ++++ ++++V
Sbjct: 294 PFDQDDWAAWSKFTANVG----------IQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V I A KLA+E GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTEAIQACKLAQENGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD W +F ++ G ++ +DL V + + ++++ ++++V
Sbjct: 294 PFDQDDWAAWSKFTANVG----------IQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V I A KLA+E GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTEAIQACKLAQENGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 55 PFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
PFD W +F ++ G ++ +DL V + + ++++ ++++V
Sbjct: 294 PFDQDDWAAWSKFTANVG----------IQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 343
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAY 174
+ V I A KLA+E GW + V H S + F A
Sbjct: 344 NQIG-----------------SVTEAIQACKLAQENGWGVMV----SHRSGETEDTFIAD 382
Query: 175 ADISLC 180
+ LC
Sbjct: 383 LVVGLC 388
>pdb|2P9Z|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P9Z|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2ENW|A Chain A, Mutant Y92h Structure Of Tthb049 From Thermus Thermophilus
Hb8
pdb|2ENW|B Chain B, Mutant Y92h Structure Of Tthb049 From Thermus Thermophilus
Hb8
Length = 177
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 216 VYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTF 267
V I D++ G++P+ E Q + TT+E K LD+A E + F
Sbjct: 10 VPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDF 61
>pdb|1V37|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Thermus
Thermophilus Hb8
pdb|1V37|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From Thermus
Thermophilus Hb8
pdb|1V7Q|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Thermus
Thermophilus Hb8
pdb|2HIA|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2EOA|A Chain A, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (W85h)
pdb|2EOA|B Chain B, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (W85h)
Length = 177
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 216 VYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTF 267
V I D++ G++P+ E Q + TT+E K LD+A E + F
Sbjct: 9 VPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDF 60
>pdb|2OWE|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2OWD|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2OWD|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2PA0|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2PA0|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P9Y|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P9Y|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P9F|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P9F|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P79|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P79|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P78|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P78|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P77|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P77|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P75|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P75|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P6O|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P6O|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P6M|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P6M|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P30|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2P2Y|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2EKZ|A Chain A, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (l52m)
pdb|2EKZ|B Chain B, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (l52m)
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|2EKB|A Chain A, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (L19m)
pdb|2EKB|B Chain B, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (L19m)
Length = 177
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332
+ ++A E+ FRF P V+ T GG +++ R +
Sbjct: 108 ESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGE 146
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 210 FSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEY 252
F D V + M P + E R DQ +EV GT N Y
Sbjct: 74 FGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNY 116
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 210 FSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEY 252
F D V + M P + E R DQ +EV GT N Y
Sbjct: 73 FGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNY 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,345,009
Number of Sequences: 62578
Number of extensions: 438976
Number of successful extensions: 1065
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 74
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)