BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018685
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
Length = 387
Score = 560 bits (1443), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/343 (76%), Positives = 301/343 (87%)
Query: 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61
S SS S+ T E L+R RIL+SKLYFD+P+ K+ +IYS YDISF+GIEKLHPFDSSKW
Sbjct: 41 SEISSFSMATHPEALRRERILNSKLYFDVPLSKVSIIYSSSYDISFMGIEKLHPFDSSKW 100
Query: 62 GRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP 121
GR+C+FL S+GFL++ IVEPLEASK DLLVVHSE+YL SL+SS V+ I EV PVA FP
Sbjct: 101 GRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFP 160
Query: 122 NCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
N LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCI
Sbjct: 161 NFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCI 220
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKV 241
H+AF++L ISRVMIIDLDAHQGNGHE D D+RVYILDM+NP IYP DY ARRFIDQKV
Sbjct: 221 HFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKV 280
Query: 242 EVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDE 301
EV+SGTTT+EYL+KLDEALEVA F PELVIYNAGTDIL+GDPLG+LKISPDGI +RDE
Sbjct: 281 EVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDGITSRDE 340
Query: 302 KTFRFARSRNIPIVMLTSGGYMKSSARVIANSVENLSRKGLIN 344
K FRFAR +NIP+VMLTSGGYMKSSARVIA+S+ENLSR+GLI
Sbjct: 341 KVFRFAREKNIPLVMLTSGGYMKSSARVIADSIENLSRQGLIQ 383
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/322 (57%), Positives = 236/322 (73%), Gaps = 1/322 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN-ISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ +E
Sbjct: 184 QGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIE 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGG 321
+ P++V+YNAGTDILEGD LG L ISP GI RDE FR R R++PI+M+TSGG
Sbjct: 244 KSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGG 303
Query: 322 YMKSSARVIANSVENLSRKGLI 343
Y K +AR+IA+S+ NL GLI
Sbjct: 304 YQKRTARIIADSILNLFGLGLI 325
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/322 (57%), Positives = 235/322 (72%), Gaps = 1/322 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN-ISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ ++
Sbjct: 184 QGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIK 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGG 321
+ P++V+YNAGTDILEGD LG L ISP GI RDE FR R R +PI+M+TSGG
Sbjct: 244 KSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGG 303
Query: 322 YMKSSARVIANSVENLSRKGLI 343
Y K +AR+IA+S+ NL GLI
Sbjct: 304 YQKRTARIIADSILNLFGLGLI 325
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/322 (56%), Positives = 233/322 (72%), Gaps = 1/322 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L +VE
Sbjct: 4 ATQLYQHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN-ISRVMIIDLDAH 201
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAH
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 183
Query: 202 QGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALE 261
QGNGHE+DF D RVYI+D++N IYP D A+ I +KVE+ GT EYL+K++ +
Sbjct: 184 QGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVERNVR 243
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGG 321
+ P++V+YNAGTD+LEGD LG L ISP GI RDE FR R+ +IPI+M+TSGG
Sbjct: 244 RSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVTSGG 303
Query: 322 YMKSSARVIANSVENLSRKGLI 343
Y K +AR+IA+S+ NL GLI
Sbjct: 304 YQKRTARIIADSILNLHDLGLI 325
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 129/294 (43%), Gaps = 18/294 (6%)
Query: 35 LPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
P++Y PDY I + H F K+ + L +G + + +P + L +VH
Sbjct: 3 FPVVYHPDYVTP---IPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVH 59
Query: 95 SESYLKSLQS---SPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERG 151
Y+ + +P I +P + +VQR + VGGTIL A+LA E G
Sbjct: 60 EPDYVTAYCQGTLTPKAQRRIGLP----WSAGVVQRTL-----TAVGGTILTAQLALEHG 110
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A N GG HH G GFC D+++ + R++I+DLD HQG+G F
Sbjct: 111 LACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQ 170
Query: 212 SDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPEL 271
D V+ M +P ++ D + + G + YL+ L LE P+L
Sbjct: 171 DDPTVFTFSMHCEVNFP---SQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDL 227
Query: 272 VIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS 325
V Y+AG D GD LG L ++ G+ R+ + P+ + GGY K+
Sbjct: 228 VFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIGGGYAKN 281
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 22/277 (7%)
Query: 67 FLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCL 124
+ + G L + +V+P AS E++ H++SYL+ L S + E L +C
Sbjct: 36 LIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCP 95
Query: 125 VQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ + Y + VGG L A +A + AIN GG+HH DE GFC D L I
Sbjct: 96 ITEGI-YDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGI 154
Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR----- 234
++ RV+ +D+D H G+G E FS S+V + + F+PG +P +
Sbjct: 155 --LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLG 212
Query: 235 --RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS 292
R+ V + G +Y + + L+ TF+PE V+ G D + GDP+ ++
Sbjct: 213 KGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMT 272
Query: 293 PDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSAR 328
P GI K ++ +P ++L GGY + ++AR
Sbjct: 273 PQGIG----KCLKYVLQWQLPTLILGGGGYHLPNTAR 305
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 22/265 (8%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
+V+P AS E++ H+++YL+ L S + E L +C + + Y +
Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAA 62
Query: 137 VGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG L A + + A+N GG+HH DE GFC D L I ++ RV
Sbjct: 63 VGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRV 120
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVV 244
+ +D+D H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 121 LYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVPLQ 180
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF 304
G ++Y + + L+ TF+PE V+ G D + GDP+ ++P+GI K
Sbjct: 181 DGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMTPEGIG----KCL 236
Query: 305 RFARSRNIPIVMLTSGGY-MKSSAR 328
++ +P ++L GGY + ++AR
Sbjct: 237 KYVLQWQLPTLILGGGGYHLPNTAR 261
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 151/328 (46%), Gaps = 30/328 (9%)
Query: 37 LIYSPDYDISFLGIEK-LHPFDSSKWGRICQFLSSEGFLDKNCIVEPLE--ASKEDLLVV 93
LIY + D + +E+ HP ++ RI + L G L+K C+ E A+ E++ +V
Sbjct: 428 LIYFNEGDDAHFDLEEDNHPEKPARTRRILKTLRESGVLEK-CVDRNCERIATNEEIRLV 486
Query: 94 HSESYLKSLQSSPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-----KLA 147
H++ L+ L+++ + + F + + R L RK VG + + K A
Sbjct: 487 HTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDA 546
Query: 148 KERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+R + V HH SA + GFC + ++++ YA + RV+I+D D H GNG +
Sbjct: 547 GQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQ 606
Query: 208 KDFSSDSRVYILDM-------FNPGIYPRDY-EARRFIDQKVEV---VSGTTT--NEYLK 254
+ F DS V + + F P P+DY + + + V SG NEY
Sbjct: 607 EIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQM 666
Query: 255 KLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPI 314
+ + F+P+LV+ +AG D DPLG K++P+ A + A R I
Sbjct: 667 AFQRVIMPIAYQFNPDLVLISAGFDAAVDDPLGEYKVTPETFALMTYQLSSLAGGR---I 723
Query: 315 VMLTSGGY----MKSSARVIANSVENLS 338
+ + GGY + +SA+ + ++N S
Sbjct: 724 ITVLEGGYNLTSISNSAQAVCEVLQNRS 751
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 140/324 (43%), Gaps = 43/324 (13%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNV---- 108
HP S + +I + L+ L+K ++ LE DL V H +S +K L S
Sbjct: 34 HPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLMESEKKTQED 93
Query: 109 --SIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAD 166
S + V + N + K + + I+A + + G+A+ G HH +
Sbjct: 94 INSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASN--GFAVVRPPG-HHADSV 150
Query: 167 EGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILD------ 220
GFC + +++ AF R++I+DLD H G+G ++ F D RV
Sbjct: 151 SPCGFCLFNNVAQAAEEAFFS-GAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEH 209
Query: 221 -MFNPGIYPRD-----------YEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFD 268
+F P + D Y A +++ +G T ++YL + L FD
Sbjct: 210 GLFWPHLPESDFDHIGSGKGLGYNANLALNE-----TGCTDSDYLSIIFHVLLPLATQFD 264
Query: 269 PELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSAR 328
P VI +AG D L GDPLG + ++PDG + A+ R ++++ GGY + +
Sbjct: 265 PHFVIISAGFDALLGDPLGGMCLTPDGYSHILYHLKSLAQGR---MLVVLEGGY---NHQ 318
Query: 329 VIANSVENLSRKGLINMGRSPVKI 352
+ A +V+ R + +G +P I
Sbjct: 319 ISAVAVQRCVR---VLLGYAPFSI 339
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 20/264 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVS 245
+DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQD 233
Query: 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFR 305
G +Y + L+ F+P+ V+ G D + GDP+ ++P GI K +
Sbjct: 234 GIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLK 289
Query: 306 FARSRNIPIVMLTSGGY-MKSSAR 328
+ + ++L GGY + ++AR
Sbjct: 290 YVLQWQLATLILGGGGYNLANTAR 313
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 20/264 (7%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVM 194
GGTI AA+ + + AIN GG+HH DE GFC D L I ++ R++
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRIL 173
Query: 195 IIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVS 245
+DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 174 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQD 233
Query: 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFR 305
G +Y + L+ F+P+ V+ G D + GDP+ ++P GI K +
Sbjct: 234 GIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLK 289
Query: 306 FARSRNIPIVMLTSGGY-MKSSAR 328
+ + ++L GGY + ++AR
Sbjct: 290 YVLQWQLATLILGGGGYNLANTAR 313
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 30/314 (9%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + K+ + + + + + IV+P AS E+
Sbjct: 15 VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ H+++YL+ LQ S + L +C + + + +GG + A
Sbjct: 67 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
G E FS S+V + + F+PG +P + R+ V + G +Y +
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
+ L+ F+P+ V+ G D + GDP+ ++P GI K ++ + +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGGY-MKSSAR 328
+L GGY + ++AR
Sbjct: 300 ILGGGGYNLANTAR 313
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 136/309 (44%), Gaps = 20/309 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVI 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
TF P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 GY-MKSSAR 328
GY +++ AR
Sbjct: 302 GYTIRNVAR 310
>sp|Q7SXM0|HDAC8_DANRE Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1
Length = 378
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 21/274 (7%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
+YSP+Y + + K+ ++ + + + G L +V+P AS E++ V H++S
Sbjct: 20 VYSPEYIQTCDSLSKV----PNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDS 75
Query: 98 YLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGW 152
YL+ L S + + L +C V + + + VGG L A L +
Sbjct: 76 YLQHLHKISQDGDNDDPQSADFGLGYDCPVVEGI-FDYAAAVGGATLTAAQNLLDGKCDV 134
Query: 153 AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212
AIN GG+HH DE G C D L I ++ RV+ +D+D H G+G E FS
Sbjct: 135 AINWAGGWHHAKKDEASGSCYVNDAVLGI--LKLREKYDRVLYVDVDLHHGDGVEDAFSF 192
Query: 213 DSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVA 263
S+V + + F+PG +P + R+ V G + Y + ++
Sbjct: 193 TSKVMTVSLHKFSPGFFPGTGDVTDTGLGKGRWYAVNVPFEDGVRDDRYCQTFTSVMQEV 252
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIA 297
F+PE V+ G D + GDP+ ++P G+A
Sbjct: 253 KALFNPEAVVMQLGADTMAGDPMCSFNMTPVGVA 286
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 135/309 (43%), Gaps = 20/309 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 GY-MKSSAR 328
GY +++ AR
Sbjct: 302 GYTIRNVAR 310
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 135/309 (43%), Gaps = 20/309 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 GY-MKSSAR 328
GY +++ AR
Sbjct: 302 GYTIRNVAR 310
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 135/309 (43%), Gaps = 20/309 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G+D L GD LG ++ G A K F +S N+P++ML G
Sbjct: 246 SKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGG 301
Query: 321 GY-MKSSAR 328
GY +++ AR
Sbjct: 302 GYTIRNVAR 310
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 134/306 (43%), Gaps = 20/306 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ + HP + L + G K I P +A+ E++ HS+
Sbjct: 11 VCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSD 70
Query: 97 SYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-G 151
Y+K L+S N+S ++ + +C V + + GG++ +A KL K++
Sbjct: 71 DYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTD 130
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+ F
Sbjct: 131 IAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEEAFY 188
Query: 212 SDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEALEVA 263
+ RV + G Y RD A ++ + G Y +
Sbjct: 189 TTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKV 248
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY- 322
F P V+ G+D L GD LG ++ G A K F +S N+P++ML GGY
Sbjct: 249 MEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGGGYT 304
Query: 323 MKSSAR 328
+++ AR
Sbjct: 305 IRNVAR 310
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 134/306 (43%), Gaps = 20/306 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ + HP + L + G K I P +A+ E++ HS+
Sbjct: 11 VCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSD 70
Query: 97 SYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-G 151
Y+K L+S N+S ++ + +C V + + GG++ +A KL K++
Sbjct: 71 DYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTD 130
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A+N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+ F
Sbjct: 131 IAVNWAGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVLYIDIDIHHGDGVEEAFY 188
Query: 212 SDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEALEVA 263
+ RV + G Y RD A ++ + G Y +
Sbjct: 189 TTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKV 248
Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY- 322
F P V+ G+D L GD LG ++ G A K F +S N+P++ML GGY
Sbjct: 249 MEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHA----KCVEFVKSFNLPMLMLGGGGYT 304
Query: 323 MKSSAR 328
+++ AR
Sbjct: 305 IRNVAR 310
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 22/265 (8%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C + + +
Sbjct: 56 IVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGI-FDYAAA 114
Query: 137 VGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
VGG + A G AIN GG+HH DE GFC D L I ++ R+
Sbjct: 115 VGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRI 172
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVV 244
+ +DLD H G+G E FS S+V + + F+PG +P + R+ V +
Sbjct: 173 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF 304
Y + L+ F+P+ V+ G D + GDP+ ++P GI K
Sbjct: 233 DCIQDERYYHICESVLKEVYIAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCL 288
Query: 305 RFARSRNIPIVMLTSGGY-MKSSAR 328
++ + ++L GGY + ++AR
Sbjct: 289 KYILQWELATLILGGGGYNLANTAR 313
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 23/291 (7%)
Query: 55 PFDSSKWGRIC---QFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVS 109
P+ K R+C + + G K + + A ED+L HSE Y+ L+ + N++
Sbjct: 30 PYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENIN 89
Query: 110 IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADE 167
+V + +C V + GG+I A R + AIN GG HH DE
Sbjct: 90 EWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDE 149
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM------ 221
GFC DI L I ++ + +RV+ ID+D H G+G ++ F RV +
Sbjct: 150 ASGFCYVNDIVLAI-LELLKFH-ARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGD 207
Query: 222 FNPGIYPRD---YEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT 278
F PG D + + V + G YL ++ + P +++ G
Sbjct: 208 FFPGTGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGA 267
Query: 279 DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSAR 328
D L D LG ++ G A + RF +S NIP ++L GGY +++ AR
Sbjct: 268 DSLRFDRLGCFNLTIKGHA----ECVRFVKSFNIPTLVLGGGGYTVRNVAR 314
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 134/309 (43%), Gaps = 20/309 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS E++
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208
+ ++N GG HH E GFC DI L I ++ + RV+ ID+D H G+G E+
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI-LELLKYH-QRVVYIDIDIHHGDGVEE 185
Query: 209 DFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEAL 260
F + RV + G Y RD A ++ + G Y +
Sbjct: 186 AFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVM 245
Query: 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320
F P V+ G D L GD LG ++ G A K F ++ N+P++ML G
Sbjct: 246 TKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHA----KCVEFIKTFNLPMLMLGGG 301
Query: 321 GY-MKSSAR 328
GY +++ AR
Sbjct: 302 GYTIRNVAR 310
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
Length = 471
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 119/266 (44%), Gaps = 22/266 (8%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQS-SP----NVSIIIEVPPVALFPNCLVQRKVLYPF 133
I P A D+ HS Y+ L S SP + S + + +C V +
Sbjct: 63 ISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFC 122
Query: 134 RKQVGGTILAA-KLAKERG-WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS 191
R GG+I AA KL ++ AIN GGG HH E GFC DI L I +++
Sbjct: 123 RASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKM-FK 180
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSRVYILDM-----FNPGI-YPRDY--EARRFIDQKVEV 243
RV+ ID+D H G+G E+ F + RV + F PG + RD E ++ V +
Sbjct: 181 RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPL 240
Query: 244 VSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKT 303
G + ++ + PE V+ G D L GD LG +S G A
Sbjct: 241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHA----DC 296
Query: 304 FRFARSRNIPIVMLTSGGY-MKSSAR 328
RF RS N+P+++L GGY +++ AR
Sbjct: 297 LRFLRSYNVPLMVLGGGGYTIRNVAR 322
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 130/303 (42%), Gaps = 21/303 (6%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ +++
Sbjct: 6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKF 65
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPF-RKQVGGTILAA-KLAK 148
HS+ Y++ L+S N+S ++ + +C V LY F + GG++ AA KL K
Sbjct: 66 HSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV-FDGLYEFCQLSAGGSVAAAVKLNK 124
Query: 149 ERGW-AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
+ IN GGG HH E GFC DI L I ++ + RV+ ID+D H G+G E
Sbjct: 125 QASEICINWGGGLHHAKKSEASGFCYVNDIVLGI-LELLKYH-QRVLYIDIDVHHGDGVE 182
Query: 208 KDFSSDSRVYILDMFNPGIY------PRDYEA--RRFIDQKVEVVSGTTTNEYLKKLDEA 259
+ F + RV + G Y RD A ++ + + G + Y
Sbjct: 183 EAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPI 242
Query: 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319
+ TF P V+ G D L GD LG ++ G K F + N+P +M+
Sbjct: 243 ISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHG----KCVEFVKKYNLPFLMVGG 298
Query: 320 GGY 322
GGY
Sbjct: 299 GGY 301
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 116/258 (44%), Gaps = 21/258 (8%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQSS-PN--VSIIIEVPPVALFPNCLVQRKVLYPFRK 135
I P AS ED+ HS+ Y+ L+S+ P+ S ++ + +C + LY F +
Sbjct: 57 IFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPL-FDGLYEFCQ 115
Query: 136 QVGGTILAA--KLAKER-GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISR 192
G LAA KL K++ AIN GG HH E GFC DI L I ++ + R
Sbjct: 116 LSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGI-LELLKYH-KR 173
Query: 193 VMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEAR-------RFIDQKVEVV 244
V+ +D+D H G+G E+ F + RV + G +P + + + V +
Sbjct: 174 VLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLR 233
Query: 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF 304
G T Y + FDP V+ G D L GD LG ++ G +
Sbjct: 234 DGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGADSLNGDRLGPFNLTLKGHG----ECA 289
Query: 305 RFARSRNIPIVMLTSGGY 322
RF RS N+P++M+ GGY
Sbjct: 290 RFFRSYNVPLMMVGGGGY 307
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+I+SP YD L + H +S + I + + S + VEP A +D+L+VHS
Sbjct: 3 IIHSPSYD---LHNHEGHVENSGRTRAILRAIESSDLSPR--FVEPGMAGIDDILMVHSS 57
Query: 97 SYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINV 156
++++ L+ + L + + + R GG +LAA+ A GW+ ++
Sbjct: 58 THVEYLE------VFAGRGGGWLDYDTYMTPESFSVARLSAGGAMLAAEEALRDGWSYSL 111
Query: 157 G---GGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
G G HH + D GFC + +I++ I +A L +SR +++D D H GNG F D
Sbjct: 112 GRPPG--HHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRD 169
Query: 214 SRVYILDMFNPGIYPRD-YEARRFIDQ-----------KVEVVSGTTTNEYLKKLDEALE 261
V + + PR + FID+ + + G+ EYL L L
Sbjct: 170 RDVMYISIHQD---PRTLFPGTGFIDETGSGEGEGFNLNIPMPRGSGNREYLWILGMILP 226
Query: 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFR----FARSRNIPIVML 317
F P+++ +AG D DPL + + DE+ F F +P +
Sbjct: 227 AVLEGFRPDMIFVSAGFDAHRRDPLAEIMV--------DEEFFSWIGWFIHQTGLPCTAV 278
Query: 318 TSGGY 322
GGY
Sbjct: 279 LEGGY 283
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 124/296 (41%), Gaps = 29/296 (9%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIV--EPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
HP + L EG + IV EP +AS ED+L VH+E Y++ L+ I
Sbjct: 20 HPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGI 79
Query: 112 IEVP---PVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAKE--RGWAINVGGGFHHCS 164
I+ PV +F L+ GG I AA+ L KE +A+ G HH
Sbjct: 80 IDFDTNIPVGVFDRALLA----------AGGAIRAAQAVLNKECENAFAMIRPPG-HHAK 128
Query: 165 ADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP 224
G GFC ++++ + + Q R+ I+D DAH G+G ++ F +D RV +
Sbjct: 129 PYIGAGFCYLNNMAIMVKWLLKQ-GFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQM 187
Query: 225 GIYPRDYEARRFIDQKVEVVS-------GTTTNEYLKKLDEALEVAGHTFDPELVIYNAG 277
+YP K E + GT Y+ +DE +E + F P+ + +AG
Sbjct: 188 PLYPGTGYPEECGTGKGEGYTVNIPLPPGTGDEGYMMVIDEIIEPVVNEFKPQFIAISAG 247
Query: 278 TDILEGDPLGMLKISPDGIAARDEKTFRFARSR-NIPIVMLTSGGYMKSSARVIAN 332
D DP+ L ++ G A + A + +V + GGY A N
Sbjct: 248 QDNHFTDPITSLALTARGYAEMMRRAVAMAEKHCDGRLVAVLEGGYSVEGALPYTN 303
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 126/306 (41%), Gaps = 21/306 (6%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDY 66
Query: 99 LKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--A 153
+ LQ SPN + + +C V + + G ++ A L + A
Sbjct: 67 IDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
IN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLT 184
Query: 214 SRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAG 264
RV + + F PG +Y E+ R+ V + G Y ++
Sbjct: 185 DRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQVI 244
Query: 265 HTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-M 323
+ P ++ G D L D LG +S G + ++ +S NIP+++L GGY +
Sbjct: 245 DFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVQYVKSFNIPLLVLGGGGYTV 300
Query: 324 KSSARV 329
++ AR
Sbjct: 301 RNVARC 306
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 127/288 (44%), Gaps = 25/288 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
+ N + + R VGG + A L G A+N +GGG HH
Sbjct: 84 DEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKALNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
G DI DPL L + + A + N I+M GGY
Sbjct: 259 NGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKIIMFGGGGY 306
>sp|O13298|PHD1_SCHPO Histone deacetylase phd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=phd1 PE=1 SV=1
Length = 434
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 138/344 (40%), Gaps = 37/344 (10%)
Query: 6 SPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRIC 65
+P +T E +++ S + K + Y D + HP +
Sbjct: 3 TPETSTPYEQVEKGSFFSFRPQ------KKRVTYHLDEQVGNYHYGDKHPMKPHRITITN 56
Query: 66 QFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPNVS--IIIEVPPVALFPN 122
+ G +K + P A+ ++ H E YL L+ +P+ + + + +
Sbjct: 57 HLVMGYGLHNKMSVFSPRMATFGEMSEFHREDYLDFLKRVTPDNAEQFADKFQQFNIGDD 116
Query: 123 CLVQRKVLYPFRKQVGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISL 179
C V Y F ++ G L A +G AIN GG HH E GFC DI L
Sbjct: 117 CPVFDGT-YEFSQRSAGASLDASRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVL 175
Query: 180 CIHYAFVQLNI----SRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYP----- 228
I LN+ RV+ ID+D H G+G ++ F RV + +N +P
Sbjct: 176 AI------LNMLRFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYNGDFFPATGNF 229
Query: 229 --RDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL 286
+ ++ V + G +Y +E +TF P ++ G D L D L
Sbjct: 230 DENGVKGGKYFALNVPLEDGIGDEQYTSLFKSIIEPTINTFQPSAIVLQCGADSLGYDRL 289
Query: 287 GMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSARV 329
G+ +S I A E RF RS NIP++++ GGY +++ AR
Sbjct: 290 GVFNLS---IHAHGE-CVRFTRSFNIPMLVVGGGGYTLRNVARA 329
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 25/288 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
G DI DPL L + + A S N ++M GGY
Sbjct: 259 NGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 25/288 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
G DI DPL L + + A S N ++M GGY
Sbjct: 259 NGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 25/288 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
G DI DPL L + + A S N ++M GGY
Sbjct: 259 NGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 25/288 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
G DI DPL L + + A S N ++M GGY
Sbjct: 259 NGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 25/288 (8%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-- 225
GFC Y DI++ Y + N RV+IID DAH G+G + F +D+ V + G
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKF 201
Query: 226 IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYN 275
++P + + ++ ++ G T N +L+ +E +F P++++
Sbjct: 202 LFPG---SGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSV 258
Query: 276 AGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322
G DI DPL L + + A S N ++M GGY
Sbjct: 259 NGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 119/290 (41%), Gaps = 21/290 (7%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL------DMF 222
GFC DI + I ++ + RV+ ID+D H G+G ++ F RV + + F
Sbjct: 142 SGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYF 199
Query: 223 NPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 279
PG +Y E+ R+ V + G Y + + P ++ G D
Sbjct: 200 FPGTGDMYEVGAESGRYYALNVPLRDGIDDQSYKHLFQPVINQVVDYYQPTCIVLQCGAD 259
Query: 280 ILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSAR 328
L D LG +S G + + +S NIP+++L GGY +++ AR
Sbjct: 260 SLGRDRLGCFNLSIRGHG----ECVEYVKSFNIPLLVLGGGGYTVRNVAR 305
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 120/291 (41%), Gaps = 21/291 (7%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL------DMF 222
GFC DI + I ++ + RV+ ID+D H G+G ++ F RV + + F
Sbjct: 142 SGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYF 199
Query: 223 NPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 279
PG +Y E+ R+ V + G Y + ++ + P ++ G D
Sbjct: 200 FPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGAD 259
Query: 280 ILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSARV 329
L D LG +S G + F +S IP+++L GGY +++ AR
Sbjct: 260 SLGCDRLGCFNLSIRGHG----ECVEFVKSFKIPLLVLGGGGYTVRNVARC 306
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1
Length = 428
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 121/291 (41%), Gaps = 21/291 (7%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS-SPN--VSI 110
HP + + G K + +P +AS+ D+ HSE Y+ LQ SPN
Sbjct: 22 HPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGF 81
Query: 111 IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEG 168
+ + +C V + + G ++ A + AIN GG HH E
Sbjct: 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEA 141
Query: 169 GGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL------DMF 222
GFC DI + I ++ + RV+ +D+D H G+G ++ F RV + + F
Sbjct: 142 SGFCYVNDIVIGI-LELLKYH-PRVLYVDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYF 199
Query: 223 NPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 279
PG +Y E+ R+ V + G Y ++ + P ++ G D
Sbjct: 200 FPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGAD 259
Query: 280 ILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSARV 329
L D LG +S G + ++ +S NIP+++L GGY +++ AR
Sbjct: 260 SLGCDRLGCFNLSIRGHG----ECVQYVKSFNIPLLVLGGGGYTVRNVARC 306
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 129/313 (41%), Gaps = 26/313 (8%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ HP + + + + +K ++ P+ A++ D+
Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRC 64
Query: 94 HSESYLKSL-QSSPNVSIIIEVPPVALFPNCLVQRKV---LYPFRK-QVGGTILAAKLAK 148
H++ Y++ L + +P+ + + P L N V LY F GG+I AA+
Sbjct: 65 HTDEYIEFLWRVTPDT--MEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELN 122
Query: 149 ERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI-SRVMIIDLDAHQGNG 205
AIN GG HH E GFC DI+L A L RV+ ID+D H G+G
Sbjct: 123 SGNAEIAINWAGGLHHAKKREASGFCYVNDIALA---ALELLKYHQRVLYIDIDVHHGDG 179
Query: 206 HEKDFSSDSRVYILDMFNPGIY-PRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLD 257
E+ F + RV G Y P + + V + G Y
Sbjct: 180 VEEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFK 239
Query: 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317
+ F PE VI GTD L GD LG +S G + F +S N+P++ +
Sbjct: 240 PVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSM----CVDFVKSFNLPMICV 295
Query: 318 TSGGY-MKSSARV 329
GGY +++ ARV
Sbjct: 296 GGGGYTVRNVARV 308
>sp|Q09440|HDA2_CAEEL Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2
PE=3 SV=1
Length = 507
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 21/303 (6%)
Query: 44 DISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ 103
D+ +LHP + + S +VE + D+ V H+E Y+ LQ
Sbjct: 38 DVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQ 97
Query: 104 S-SPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKL--AKERGWAINVG 157
+ +P + + + + F +C + + GG++ A+ K IN
Sbjct: 98 TVTPKLGLTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWP 157
Query: 158 GGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVY 217
GG HH E GFC DI L I ++ + RV+ ID+D H G+G ++ F++ RV
Sbjct: 158 GGLHHAKKSEASGFCYVNDIVLGI-LELLKYH-KRVLYIDIDIHHGDGVQEAFNNSDRVM 215
Query: 218 ILDM-----FNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDP 269
+ + PG I + ++ V +++ YLK + + F+P
Sbjct: 216 TVSFHRFGQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFESVISGVEENFNP 275
Query: 270 ELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSAR 328
E ++ G+D L D LG +S + A + ++ +S P+++L GGY +++ AR
Sbjct: 276 EAIVLQCGSDSLCEDRLGQFALSFNAHA----RAVKYVKSLGKPLMVLGGGGYTLRNVAR 331
Query: 329 VIA 331
A
Sbjct: 332 CWA 334
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 116/294 (39%), Gaps = 23/294 (7%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ Y P+ + G + HP + L+ G L +++P A DL
Sbjct: 18 KVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75
Query: 94 HSE---SYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER 150
H++ S+L+S+ I ++ + +C V LY F + G + +
Sbjct: 76 HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPV-FDGLYSFCQTYAGGSVGGSVKLNH 134
Query: 151 GW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
G AIN GG HH E GFC DI L I Q RV+ +D+D H G+G E
Sbjct: 135 GLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVE 192
Query: 208 KDFSSDSRVYILDM-----FNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEA 259
+ F + RV + + PG I Y + ++ V + G Y
Sbjct: 193 EAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPI 252
Query: 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIP 313
+ F P V+ G D L GD LG +S G A + +F RS N+P
Sbjct: 253 MGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVP 302
>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1
Length = 428
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 124/312 (39%), Gaps = 33/312 (10%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDY 66
Query: 99 LKSLQ-----------SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
+ LQ S N + + PV FP L + Y G T L K+
Sbjct: 67 IDFLQRVSPTNMQGFTKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNKIC 123
Query: 148 KERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207
AIN GG HH E GFC DI + I ++ + RV+ ID+D H G+G +
Sbjct: 124 D---IAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQ 178
Query: 208 KDFSSDSRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDE 258
+ F RV + + F PG +Y E+ R+ V + G Y
Sbjct: 179 EAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQP 238
Query: 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318
+ + P ++ G D L D LG +S G + + +S NIP+++L
Sbjct: 239 VINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLVLG 294
Query: 319 SGGY-MKSSARV 329
GGY +++ AR
Sbjct: 295 GGGYTVRNVARC 306
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 118/297 (39%), Gaps = 30/297 (10%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
++ Y PD + G + HP + L+ G L++ + P A + +L
Sbjct: 24 RVCYFYDPDVGNYYYG--QGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRF 81
Query: 94 HSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKV-----LYPFRKQVGGTIL--AAKL 146
H+E Y+ L+S V+ + + L V + LY F + G + A K
Sbjct: 82 HAEEYINFLRS---VTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKF 138
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGN 204
AIN GG HH E GFC DI L I ++L + RV+ +D+D H G+
Sbjct: 139 NHGHDIAINWSGGLHHAKKCEASGFCYVNDIVLAI----LELLKHHERVLYVDIDIHHGD 194
Query: 205 GHEKDFSSDSRVYILDMFNPGIY------PRD--YEARRFIDQKVEVVSGTTTNEYLKKL 256
G E+ F + RV + G Y RD + ++ V + G Y
Sbjct: 195 GVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLF 254
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIP 313
+ F P V+ G D L GD LG +S G A + R+ RS N+P
Sbjct: 255 KPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVRYMRSFNVP 307
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA
PE=2 SV=1
Length = 495
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 126/298 (42%), Gaps = 38/298 (12%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HP + + + G K I P +AS+ +L HS+ Y+ L+ ++
Sbjct: 23 HPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFHSDDYINFLK-------LVT 75
Query: 114 VPPVALFPNCLVQRKV---------LYPFRK-QVGGTI-LAAKL-AKERGWAINVGGGFH 161
+ + LV+ V +Y F + GG+I A K+ +KE AIN GG H
Sbjct: 76 PDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLH 135
Query: 162 HCSADEGGGFCAYADISLCIHYAFVQL--NISRVMIIDLDAHQGNGHEKDFSSDSRVYIL 219
H E GFC DI L I ++L + RV+ ID+D H G+G E+ F + RV +
Sbjct: 136 HAKKSEASGFCYTNDIVLSI----LELLKHHERVLYIDIDIHHGDGVEEAFYTTDRVMTV 191
Query: 220 DMFNPGIY------PRDYEAR--RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPEL 271
G Y +D A ++ + G Y + + P
Sbjct: 192 SFHKYGDYFPGTGDVKDIGADKGKYYSLNFPLKDGIDDESYQSIFRPIIRSVMDFYRPGA 251
Query: 272 VIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSAR 328
V+ G D L GD LG ++ G A + F +S N+P+V+L GGY +K+ AR
Sbjct: 252 VVIQCGADSLTGDRLGCFNLTLRGHA----QCIEFLKSFNVPLVVLGGGGYTIKNVAR 305
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2
Length = 428
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 120/297 (40%), Gaps = 33/297 (11%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ---------- 103
HP + + G K + +P +AS+ D+ HSE Y+ LQ
Sbjct: 22 HPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81
Query: 104 -SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHH 162
S N + + PV FP L + Y G T L K+ AIN GG HH
Sbjct: 82 TKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNKICD---IAINWAGGLHH 135
Query: 163 CSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL--- 219
E GFC DI + I ++ + RV+ ID+D H G+G ++ F RV +
Sbjct: 136 AKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFH 193
Query: 220 ---DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVI 273
+ F PG +Y E+ R+ V + G Y + + P ++
Sbjct: 194 KYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIV 253
Query: 274 YNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSARV 329
G D L D LG +S G + + +S NIP+++L GGY +++ AR
Sbjct: 254 LQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLVLGGGGYTVRNVARC 306
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 21/306 (6%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDY 66
Query: 99 LKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWA 153
+ LQ SPN + + +C V + + G ++ A + A
Sbjct: 67 IDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSD 213
IN GG HH E GFC DI + I ++ + RV+ ID+D H G+G ++ F
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVISI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLT 184
Query: 214 SRVYIL------DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAG 264
RV + + F PG +Y E+ R+ V + G Y + ++
Sbjct: 185 DRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVV 244
Query: 265 HTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-M 323
+ P ++ G D L D LG +S G + F + IP+++L GGY +
Sbjct: 245 DFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEFVKGFKIPLLVLGGGGYTV 300
Query: 324 KSSARV 329
++ AR
Sbjct: 301 RNVARC 306
>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1
Length = 424
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 120/297 (40%), Gaps = 33/297 (11%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ---------- 103
HP + + G K + +P +AS+ D+ HSE Y+ LQ
Sbjct: 22 HPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81
Query: 104 -SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHH 162
S N + + PV FP L + Y G T L K+ AIN GG HH
Sbjct: 82 TKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNKICD---IAINWAGGLHH 135
Query: 163 CSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL--- 219
E GFC DI + I ++ + RV+ ID+D H G+G ++ F RV +
Sbjct: 136 AKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFH 193
Query: 220 ---DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVI 273
+ F PG +Y E+ R+ V + G Y + + P ++
Sbjct: 194 KYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVISQVVDFYQPTCIV 253
Query: 274 YNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSARV 329
G D L D LG +S G + + +S NIP+++L GGY +++ AR
Sbjct: 254 LQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLVLGGGGYTVRNVARC 306
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1
Length = 428
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 120/297 (40%), Gaps = 33/297 (11%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ---------- 103
HP + + G K + +P +AS+ D+ HSE Y+ LQ
Sbjct: 22 HPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81
Query: 104 -SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHH 162
S N + + PV FP L + Y G T L K+ AIN GG HH
Sbjct: 82 TKSLNAFNVGDDCPV--FPG-LFEFCSRYTGASLQGATQLNNKICD---IAINWAGGLHH 135
Query: 163 CSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL--- 219
E GFC DI + I ++ + RV+ ID+D H G+G ++ F RV +
Sbjct: 136 AKKFEASGFCYVNDIVIGI-LELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFH 193
Query: 220 ---DMFNPG---IYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVI 273
+ F PG +Y E+ R+ V + G Y + + P ++
Sbjct: 194 KYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVISQVVDFYQPTCIV 253
Query: 274 YNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY-MKSSARV 329
G D L D LG +S G + + +S NIP+++L GGY +++ AR
Sbjct: 254 LQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSFNIPLLVLGGGGYTVRNVARC 306
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 30/276 (10%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
IYSP Y E HPF+ + L + D IV P AS+E+L +VH++
Sbjct: 6 FIYSPSYQTYMFHQE--HPFNQQRVLLTYDLLKTINAFDDGDIVTPRLASEEELSLVHTD 63
Query: 97 SYLKS--------LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--L 146
Y+++ L + S + +F +L VGGT+ AA +
Sbjct: 64 DYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLL------VGGTLTAADWVM 117
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNIS-RVMIIDLDAHQGNG 205
+ + A N+GGG HH GFC Y D ++ I Y +Q S RV+ ID DAH G+G
Sbjct: 118 SGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQY--IQKKYSARVLYIDTDAHHGDG 175
Query: 206 HEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQK-------VEVVSGTTTNEYLKKL 256
+ F + V L + G ++P + + K + + + T + +L+
Sbjct: 176 VQFTFYDNPDVCTLSIHETGRYLFPGTGQIQEKGSGKGYGYSFNIPLDAFTEDDSFLEAY 235
Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS 292
A F+P+++I G D DPL L +
Sbjct: 236 RTAASEVAAYFEPDVIISQNGADAHYYDPLTHLSAT 271
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 78.2 bits (191), Expect = 8e-14, Method: Composition-based stats.
Identities = 81/321 (25%), Positives = 135/321 (42%), Gaps = 45/321 (14%)
Query: 43 YDISF-LGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKS 101
+D SF G E+LH I + L EG LD+ + A KE+L++VHS Y+
Sbjct: 101 WDDSFPEGPERLHA--------IKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDL 152
Query: 102 LQSSPNVS------IIIEVPPVALFPN-----CLVQRKVLYPFRKQVGGTILAAKLAKER 150
++++ ++ + V L PN CL VL ++ +L A++
Sbjct: 153 METTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVL-----RLVDAVLGAEI--RN 205
Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
G AI G HH G+C + +++ YA + I RV+I+D D H G G + F
Sbjct: 206 GMAIIRPPG-HHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTF 264
Query: 211 SSDSRVYILDM-------FNPGIYPRDYEARRFIDQKVEVVS------GTTTNEYLKKLD 257
D V + F P + ++ F + ++ G +Y+
Sbjct: 265 DQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFL 324
Query: 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317
L F P+LV+ AG D L+GDP G + +P G A A + +++
Sbjct: 325 HVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGK---LILS 381
Query: 318 TSGGY-MKSSARVIANSVENL 337
GGY +++ A ++ S+ L
Sbjct: 382 LEGGYNLRALAEGVSASLHTL 402
Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats.
Identities = 82/325 (25%), Positives = 137/325 (42%), Gaps = 35/325 (10%)
Query: 30 IPIFKLPLIYSPD---YDISFLGIEKL----HPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+PI P++ S YD + + L HP + RI L G + + P
Sbjct: 469 LPILTWPVLQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTP 528
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGT-- 140
A++ +LL HS Y+ L+++ + + F + + + G
Sbjct: 529 RPATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACR 588
Query: 141 ILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA-FVQLNISRVMIID 197
++ A L+ E G A+ G HH D GFC + +++ +A + + R++I+D
Sbjct: 589 LVEAVLSGEVLNGAAVVRPPG-HHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVD 647
Query: 198 LDAHQGNGHEKDFSSDSRV-YI-LDMFNPG-IYPRDYEARRFIDQKVEVVSGT--TTN-- 250
D H GNG + F D V Y+ L ++ G +P E ++ +GT T N
Sbjct: 648 WDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEG---ASSQIGRAAGTGFTVNVA 704
Query: 251 ---------EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDE 301
+YL + + F+PELV+ +AG D GDPLG ++SP+G A
Sbjct: 705 WNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTH 764
Query: 302 KTFRFARSRNIPIVMLTSGGYMKSS 326
A R I+++ GGY +S
Sbjct: 765 LLMGLASGR---IILILEGGYNLTS 786
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 133/320 (41%), Gaps = 41/320 (12%)
Query: 31 PIFKLPLIYSPDYDISF--------LGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
P+F+ YSP F G++ HP + +SS G + E
Sbjct: 16 PLFEFNSAYSPRVSYHFNSKVSHYHYGVK--HPMKPFRLMLTDHLVSSYGLHKIMDLYET 73
Query: 83 LEASKEDLLVVHSESYLKSL-QSSPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVG 138
A++++LL HSE Y+ L + SP + + + F +C + + LY +
Sbjct: 74 RSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQN-LYDYTTLYT 132
Query: 139 GTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI----S 191
G L A + + AIN GG HH + GFC DI L I LN+
Sbjct: 133 GASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSI------LNLLRYHP 186
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRD-------YEARRFIDQKVE 242
R++ ID+D H G+G ++ F + RV+ L +N +P + + V
Sbjct: 187 RILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDKGKHFALNVP 246
Query: 243 VVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEK 302
+ G + Y+ ++ TF P L++ G D L D LG ++ I A E
Sbjct: 247 LEDGIDDDSYINLFKSIVDPLIMTFKPTLIVQQCGADSLGHDRLGCFNLN---IKAHGE- 302
Query: 303 TFRFARSRNIPIVMLTSGGY 322
+F +S +P++++ GGY
Sbjct: 303 CVKFVKSFGLPMLVVGGGGY 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,181,965
Number of Sequences: 539616
Number of extensions: 5692595
Number of successful extensions: 13986
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 13669
Number of HSP's gapped (non-prelim): 158
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)