Query 018685
Match_columns 352
No_of_seqs 204 out of 1450
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0123 AcuC Deacetylases, inc 100.0 4.7E-81 1E-85 607.7 29.9 301 33-341 2-313 (340)
2 PTZ00346 histone deacetylase; 100.0 1.9E-80 4E-85 612.9 33.3 304 33-344 20-341 (429)
3 PTZ00063 histone deacetylase; 100.0 1.8E-79 3.9E-84 609.1 33.1 301 32-340 3-319 (436)
4 PF00850 Hist_deacetyl: Histon 100.0 1.4E-79 3.1E-84 593.9 20.0 288 40-337 1-310 (311)
5 KOG1342 Histone deacetylase co 100.0 3.3E-66 7.2E-71 494.0 26.6 306 31-344 5-325 (425)
6 KOG1344 Predicted histone deac 100.0 2.5E-60 5.3E-65 428.6 16.3 321 23-344 4-324 (324)
7 KOG1343 Histone deacetylase co 100.0 7.3E-49 1.6E-53 411.9 19.0 278 52-343 463-761 (797)
8 KOG1343 Histone deacetylase co 100.0 4.2E-37 9E-42 323.4 9.2 291 31-326 27-341 (797)
9 cd01835 SGNH_hydrolase_like_3 89.7 2.4 5.2E-05 37.3 9.0 75 240-317 42-117 (193)
10 cd01828 sialate_O-acetylestera 86.6 4.1 8.8E-05 35.0 8.3 45 266-317 46-93 (169)
11 cd01822 Lysophospholipase_L1_l 86.3 4.9 0.00011 34.5 8.6 49 263-317 59-107 (177)
12 cd04501 SGNH_hydrolase_like_4 85.7 5.6 0.00012 34.6 8.7 59 249-318 44-103 (183)
13 cd01832 SGNH_hydrolase_like_1 84.2 6.5 0.00014 34.1 8.5 61 251-318 51-112 (185)
14 PF13472 Lipase_GDSL_2: GDSL-l 81.7 3.2 6.9E-05 34.8 5.3 78 240-323 35-113 (179)
15 cd01836 FeeA_FeeB_like SGNH_hy 80.4 8.9 0.00019 33.5 7.9 60 246-317 50-112 (191)
16 PRK10528 multifunctional acyl- 79.1 21 0.00045 31.7 10.0 48 263-317 66-114 (191)
17 cd01838 Isoamyl_acetate_hydrol 79.0 9.9 0.00022 33.0 7.8 48 268-317 63-113 (199)
18 cd01833 XynB_like SGNH_hydrola 78.7 9.9 0.00021 32.1 7.4 41 263-310 35-76 (157)
19 cd01825 SGNH_hydrolase_peri1 S 77.3 12 0.00027 32.3 7.8 54 259-318 47-103 (189)
20 KOG0121 Nuclear cap-binding pr 76.9 1.9 4.2E-05 36.8 2.3 47 162-208 71-122 (153)
21 cd01821 Rhamnogalacturan_acety 76.0 13 0.00028 32.8 7.7 48 268-317 65-113 (198)
22 PRK14478 nitrogenase molybdenu 75.8 8.6 0.00019 39.7 7.3 73 255-340 106-179 (475)
23 TIGR01285 nifN nitrogenase mol 74.6 15 0.00032 37.5 8.6 79 254-342 77-157 (432)
24 cd01841 NnaC_like NnaC (CMP-Ne 72.7 22 0.00048 30.4 8.2 66 239-316 27-95 (174)
25 cd01830 XynE_like SGNH_hydrola 72.5 21 0.00045 31.9 8.1 63 251-316 60-124 (204)
26 cd04502 SGNH_hydrolase_like_7 71.9 22 0.00049 30.4 8.0 47 264-317 46-95 (171)
27 PRK14476 nitrogenase molybdenu 71.9 24 0.00052 36.2 9.4 78 254-341 78-157 (455)
28 TIGR03018 pepcterm_TyrKin exop 70.2 9.8 0.00021 34.3 5.5 24 254-277 134-157 (207)
29 TIGR03282 methan_mark_13 putat 68.7 32 0.00069 34.2 8.9 74 255-344 62-137 (352)
30 CHL00073 chlN photochlorophyll 67.6 20 0.00043 37.0 7.6 58 255-325 84-142 (457)
31 cd01820 PAF_acetylesterase_lik 67.1 15 0.00032 33.1 6.0 47 264-317 85-134 (214)
32 cd00984 DnaB_C DnaB helicase C 66.1 23 0.00049 32.4 7.2 54 256-318 111-170 (242)
33 cd01966 Nitrogenase_NifN_1 Nit 65.6 30 0.00066 35.0 8.5 75 255-342 68-147 (417)
34 PRK13236 nitrogenase reductase 64.7 7.4 0.00016 37.4 3.7 33 178-212 23-55 (296)
35 PF00148 Oxidored_nitro: Nitro 64.6 11 0.00023 37.5 5.0 75 254-341 60-135 (398)
36 TIGR01279 DPOR_bchN light-inde 64.4 17 0.00036 36.8 6.3 73 254-339 70-143 (407)
37 cd01967 Nitrogenase_MoFe_alpha 64.4 52 0.0011 32.8 9.9 73 254-339 73-147 (406)
38 cd01971 Nitrogenase_VnfN_like 64.3 28 0.00061 35.3 8.0 72 254-339 72-144 (427)
39 cd01968 Nitrogenase_NifE_I Nit 63.8 28 0.00061 35.0 7.9 72 255-339 73-145 (410)
40 TIGR01969 minD_arch cell divis 63.6 8.4 0.00018 35.2 3.8 19 185-204 25-43 (251)
41 TIGR01278 DPOR_BchB light-inde 63.3 15 0.00033 38.2 6.0 73 254-340 71-144 (511)
42 cd01972 Nitrogenase_VnfE_like 62.8 32 0.0007 34.8 8.1 73 254-339 75-149 (426)
43 cd01829 SGNH_hydrolase_peri2 S 62.8 42 0.00092 29.3 8.1 56 263-318 54-115 (200)
44 TIGR00161 conserved hypothetic 61.9 58 0.0013 30.5 9.1 28 173-200 25-53 (238)
45 TIGR01283 nifE nitrogenase mol 61.8 26 0.00056 35.9 7.3 71 255-338 108-179 (456)
46 cd01979 Pchlide_reductase_N Pc 61.5 23 0.0005 35.5 6.7 73 254-339 73-146 (396)
47 COG3914 Spy Predicted O-linked 61.4 2.3E+02 0.005 30.3 14.1 149 167-340 312-483 (620)
48 cd01834 SGNH_hydrolase_like_2 61.3 22 0.00047 30.6 5.8 50 265-317 58-110 (191)
49 PF09754 PAC2: PAC2 family; I 58.6 12 0.00026 34.0 3.8 97 178-284 13-114 (219)
50 cd01965 Nitrogenase_MoFe_beta_ 58.3 42 0.00091 34.0 8.0 73 255-340 68-145 (428)
51 cd00229 SGNH_hydrolase SGNH_hy 58.3 57 0.0012 26.6 7.7 57 262-323 59-118 (187)
52 cd01981 Pchlide_reductase_B Pc 58.0 23 0.00051 35.8 6.2 73 255-340 72-145 (430)
53 PRK08760 replicative DNA helic 57.9 26 0.00056 36.3 6.5 50 260-318 331-386 (476)
54 COG1091 RfbD dTDP-4-dehydrorha 56.9 15 0.00033 35.4 4.3 53 260-316 42-97 (281)
55 TIGR00665 DnaB replicative DNA 56.7 32 0.00069 34.8 6.9 52 258-318 295-352 (434)
56 TIGR02855 spore_yabG sporulati 55.7 31 0.00067 33.2 6.0 33 258-291 143-175 (283)
57 CHL00076 chlB photochlorophyll 55.3 54 0.0012 34.3 8.4 72 254-338 71-143 (513)
58 cd01839 SGNH_arylesterase_like 55.2 70 0.0015 28.3 8.2 40 266-310 77-117 (208)
59 PRK05595 replicative DNA helic 55.0 27 0.00059 35.6 6.1 46 263-317 306-357 (444)
60 TIGR01862 N2-ase-Ialpha nitrog 54.3 42 0.00091 34.3 7.3 74 255-341 104-180 (443)
61 cd01974 Nitrogenase_MoFe_beta 53.4 43 0.00094 34.0 7.2 73 254-339 71-148 (435)
62 PRK09165 replicative DNA helic 53.3 36 0.00078 35.4 6.7 48 262-318 335-390 (497)
63 cd01122 GP4d_helicase GP4d_hel 52.8 28 0.00061 32.4 5.4 52 258-318 130-188 (271)
64 TIGR01284 alt_nitrog_alph nitr 52.6 49 0.0011 34.0 7.5 75 255-342 111-189 (457)
65 PRK05973 replicative DNA helic 52.6 33 0.00071 32.2 5.7 51 259-318 138-190 (237)
66 cd01977 Nitrogenase_VFe_alpha 52.3 69 0.0015 32.3 8.4 75 255-342 74-152 (415)
67 cd04237 AAK_NAGS-ABP AAK_NAGS- 52.3 42 0.00091 32.1 6.6 62 251-324 1-62 (280)
68 cd00840 MPP_Mre11_N Mre11 nucl 52.0 94 0.002 27.5 8.5 65 249-323 23-87 (223)
69 TIGR01287 nifH nitrogenase iro 51.5 20 0.00043 33.7 4.1 22 185-208 24-45 (275)
70 PHA02518 ParA-like protein; Pr 51.5 21 0.00045 31.6 4.1 22 185-208 25-46 (211)
71 PRK10818 cell division inhibit 51.1 18 0.0004 33.7 3.8 20 187-207 29-48 (270)
72 cd03466 Nitrogenase_NifN_2 Nit 50.6 1E+02 0.0022 31.3 9.4 73 254-339 70-146 (429)
73 PRK05636 replicative DNA helic 50.5 43 0.00093 35.0 6.7 49 260-317 367-421 (505)
74 PRK14477 bifunctional nitrogen 49.8 87 0.0019 35.3 9.4 74 255-341 558-636 (917)
75 PF10609 ParA: ParA/MinD ATPas 49.6 21 0.00046 27.9 3.3 55 241-319 6-61 (81)
76 COG0420 SbcD DNA repair exonuc 49.4 74 0.0016 31.6 8.0 67 248-324 21-87 (390)
77 CHL00175 minD septum-site dete 49.2 21 0.00045 33.7 3.9 20 187-207 42-61 (281)
78 cd01844 SGNH_hydrolase_like_6 48.8 62 0.0013 27.9 6.6 18 262-279 51-68 (177)
79 PRK13232 nifH nitrogenase redu 48.7 18 0.00039 34.0 3.4 23 186-210 26-48 (273)
80 PHA02542 41 41 helicase; Provi 48.5 77 0.0017 32.9 8.2 62 245-317 280-350 (473)
81 PRK14477 bifunctional nitrogen 48.4 45 0.00097 37.5 6.8 71 255-338 99-170 (917)
82 PHA02546 47 endonuclease subun 48.1 1.1E+02 0.0024 29.9 9.0 65 250-323 22-87 (340)
83 TIGR03600 phage_DnaB phage rep 48.0 64 0.0014 32.5 7.4 50 260-318 296-351 (421)
84 PRK06321 replicative DNA helic 48.0 52 0.0011 34.1 6.8 50 260-318 328-386 (472)
85 PRK02842 light-independent pro 47.8 66 0.0014 32.6 7.5 72 255-339 83-157 (427)
86 PRK05748 replicative DNA helic 46.5 51 0.0011 33.6 6.5 49 260-317 305-361 (448)
87 PRK13230 nitrogenase reductase 46.5 21 0.00047 33.6 3.5 25 183-209 23-47 (279)
88 TIGR00162 conserved hypothetic 46.1 54 0.0012 29.6 5.9 31 290-320 26-56 (188)
89 COG0825 AccA Acetyl-CoA carbox 45.7 1.6E+02 0.0035 28.7 9.2 96 239-348 126-227 (317)
90 cd02036 MinD Bacterial cell di 45.6 27 0.0006 29.8 3.8 21 187-208 26-46 (179)
91 TIGR02932 vnfK_nitrog V-contai 45.3 77 0.0017 32.6 7.6 76 255-340 76-157 (457)
92 cd01973 Nitrogenase_VFe_beta_l 45.0 1.2E+02 0.0026 31.1 9.0 76 255-340 73-154 (454)
93 PRK08006 replicative DNA helic 44.8 66 0.0014 33.3 7.0 46 264-318 331-383 (471)
94 PF02585 PIG-L: GlcNAc-PI de-N 44.8 36 0.00077 28.0 4.2 28 253-280 85-112 (128)
95 cd02040 NifH NifH gene encodes 44.3 33 0.00072 31.8 4.4 21 187-209 27-47 (270)
96 PRK05724 acetyl-CoA carboxylas 43.7 3E+02 0.0066 27.1 11.0 47 291-338 132-186 (319)
97 PF05582 Peptidase_U57: YabG p 43.5 59 0.0013 31.4 5.9 27 258-285 144-170 (287)
98 cd00316 Oxidoreductase_nitroge 43.4 86 0.0019 30.9 7.5 72 256-340 68-140 (399)
99 COG1618 Predicted nucleotide k 43.3 89 0.0019 28.1 6.5 37 269-318 101-137 (179)
100 TIGR00619 sbcd exonuclease Sbc 43.2 1.4E+02 0.0031 27.9 8.5 61 251-319 23-83 (253)
101 cd01976 Nitrogenase_MoFe_alpha 42.7 86 0.0019 31.8 7.4 57 255-324 85-143 (421)
102 cd06558 crotonase-like Crotona 42.5 1.6E+02 0.0035 25.6 8.4 72 249-320 24-102 (195)
103 PF03796 DnaB_C: DnaB-like hel 42.1 47 0.001 30.9 5.1 54 256-318 117-177 (259)
104 PF04321 RmlD_sub_bind: RmlD s 41.8 5.2 0.00011 38.2 -1.5 54 260-317 43-99 (286)
105 TIGR02931 anfK_nitrog Fe-only 41.2 76 0.0016 32.7 6.8 75 256-340 80-161 (461)
106 TIGR01282 nifD nitrogenase mol 40.1 90 0.002 32.2 7.2 57 255-324 118-176 (466)
107 PRK13185 chlL protochlorophyll 39.7 35 0.00075 31.9 3.8 21 187-209 28-48 (270)
108 PF02310 B12-binding: B12 bind 39.6 54 0.0012 26.3 4.5 47 262-323 45-91 (121)
109 cd02117 NifH_like This family 39.4 34 0.00073 30.8 3.5 22 187-210 26-47 (212)
110 cd01125 repA Hexameric Replica 39.2 1E+02 0.0022 28.2 6.8 45 266-319 109-157 (239)
111 TIGR01281 DPOR_bchL light-inde 39.1 34 0.00073 31.9 3.6 21 187-209 26-46 (268)
112 TIGR01968 minD_bact septum sit 39.0 37 0.0008 31.1 3.8 14 191-204 31-44 (261)
113 PF02701 zf-Dof: Dof domain, z 38.9 11 0.00023 28.1 0.1 9 169-177 16-24 (63)
114 CHL00198 accA acetyl-CoA carbo 38.9 1.7E+02 0.0036 28.9 8.4 33 291-324 135-168 (322)
115 COG2047 Uncharacterized protei 38.9 66 0.0014 30.2 5.2 46 268-324 83-128 (258)
116 TIGR03878 thermo_KaiC_2 KaiC d 38.5 1.4E+02 0.003 28.1 7.6 53 258-319 121-174 (259)
117 cd02068 radical_SAM_B12_BD B12 38.1 94 0.002 25.5 5.8 51 258-324 29-79 (127)
118 PF13481 AAA_25: AAA domain; P 37.9 59 0.0013 28.3 4.8 52 262-318 134-186 (193)
119 COG0683 LivK ABC-type branched 37.0 92 0.002 30.6 6.5 35 177-211 135-169 (366)
120 cd03110 Fer4_NifH_child This p 36.8 25 0.00054 30.5 2.2 15 191-205 25-39 (179)
121 TIGR01860 VNFD nitrogenase van 36.7 1.4E+02 0.003 30.8 7.9 56 256-324 114-172 (461)
122 PRK13234 nifH nitrogenase redu 36.6 40 0.00086 32.4 3.7 23 186-210 29-51 (295)
123 PF02310 B12-binding: B12 bind 36.3 1.6E+02 0.0036 23.4 6.9 72 177-277 17-88 (121)
124 TIGR02016 BchX chlorophyllide 36.2 42 0.0009 32.4 3.8 16 187-203 26-41 (296)
125 PRK07658 enoyl-CoA hydratase; 35.9 2E+02 0.0043 26.7 8.3 74 246-320 23-103 (257)
126 PRK02910 light-independent pro 35.7 1.5E+02 0.0033 31.0 8.1 71 255-340 72-143 (519)
127 PF14606 Lipase_GDSL_3: GDSL-l 35.5 67 0.0014 28.9 4.7 53 260-323 51-105 (178)
128 PRK05279 N-acetylglutamate syn 35.2 1.2E+02 0.0026 30.8 7.1 64 249-324 6-69 (441)
129 COG1066 Sms Predicted ATP-depe 35.1 1.7E+02 0.0038 30.0 7.9 54 264-318 164-217 (456)
130 TIGR01286 nifK nitrogenase mol 35.1 2.2E+02 0.0048 29.8 9.2 73 255-340 129-206 (515)
131 PLN03230 acetyl-coenzyme A car 34.8 4.1E+02 0.0088 27.3 10.5 49 290-339 201-257 (431)
132 cd08165 MPP_MPPE1 human MPPE1 34.6 2E+02 0.0043 24.7 7.5 16 259-274 29-44 (156)
133 cd03111 CpaE_like This protein 34.4 85 0.0019 25.0 4.8 14 191-204 30-43 (106)
134 TIGR03371 cellulose_yhjQ cellu 33.7 45 0.00098 30.3 3.5 17 186-204 27-43 (246)
135 PF01993 MTD: methylene-5,6,7, 33.3 51 0.0011 31.3 3.6 48 257-320 48-95 (276)
136 PRK07854 enoyl-CoA hydratase; 33.1 3.1E+02 0.0067 25.4 9.0 67 246-320 22-95 (243)
137 KOG1432 Predicted DNA repair e 33.0 1.4E+02 0.0031 29.8 6.8 52 260-320 92-143 (379)
138 PRK06495 enoyl-CoA hydratase; 32.7 2.3E+02 0.0049 26.5 8.1 29 246-274 25-53 (257)
139 PRK06749 replicative DNA helic 32.4 1.2E+02 0.0027 30.8 6.7 25 293-317 322-346 (428)
140 PRK13233 nifH nitrogenase redu 32.3 48 0.001 31.1 3.5 19 191-210 32-50 (275)
141 COG1891 Uncharacterized protei 32.2 78 0.0017 28.7 4.4 40 249-289 94-134 (235)
142 COG2425 Uncharacterized protei 31.9 95 0.002 31.9 5.6 70 250-333 347-418 (437)
143 PRK07773 replicative DNA helic 31.6 1.5E+02 0.0032 33.3 7.6 49 260-317 319-373 (886)
144 PRK00994 F420-dependent methyl 31.5 47 0.001 31.4 3.1 47 258-320 50-96 (277)
145 COG1831 Predicted metal-depend 31.4 2E+02 0.0044 27.7 7.4 92 246-337 50-147 (285)
146 PRK08840 replicative DNA helic 31.2 1.3E+02 0.0028 31.1 6.6 45 265-318 325-376 (464)
147 cd02032 Bchl_like This family 31.2 50 0.0011 30.8 3.4 19 187-207 26-44 (267)
148 PRK10037 cell division protein 31.1 49 0.0011 30.7 3.2 21 185-207 26-46 (250)
149 PRK09856 fructoselysine 3-epim 30.0 4E+02 0.0087 24.6 9.3 57 261-320 53-112 (275)
150 PRK13235 nifH nitrogenase redu 30.0 59 0.0013 30.5 3.6 25 183-209 23-47 (274)
151 cd01822 Lysophospholipase_L1_l 29.9 3.3E+02 0.0072 22.8 11.0 60 247-316 81-140 (177)
152 cd07384 MPP_Cdc1_like Saccharo 29.4 2.3E+02 0.0051 24.7 7.2 57 259-323 36-98 (171)
153 cd01827 sialate_O-acetylestera 29.2 1.9E+02 0.0041 24.8 6.6 39 266-309 65-104 (188)
154 cd06361 PBP1_GPC6A_like Ligand 29.0 5.8E+02 0.012 25.4 10.8 105 181-323 163-270 (403)
155 cd06355 PBP1_FmdD_like Peripla 28.8 1E+02 0.0022 29.7 5.3 34 177-210 120-153 (348)
156 TIGR03877 thermo_KaiC_1 KaiC d 28.6 2E+02 0.0043 26.4 6.9 55 256-319 114-169 (237)
157 COG4671 Predicted glycosyl tra 28.6 82 0.0018 31.7 4.4 29 247-275 85-113 (400)
158 PF00581 Rhodanese: Rhodanese- 28.4 1.5E+02 0.0033 22.8 5.3 17 307-323 92-108 (113)
159 cd04506 SGNH_hydrolase_YpmR_li 28.4 81 0.0018 27.7 4.1 51 267-317 67-127 (204)
160 TIGR01007 eps_fam capsular exo 28.3 66 0.0014 28.6 3.5 13 191-203 47-59 (204)
161 COG0299 PurN Folate-dependent 28.2 68 0.0015 29.4 3.5 25 253-278 64-88 (200)
162 COG2755 TesA Lysophospholipase 28.1 2.2E+02 0.0048 25.1 6.9 47 262-311 70-118 (216)
163 TIGR02015 BchY chlorophyllide 28.0 2.9E+02 0.0062 28.1 8.4 69 254-339 73-144 (422)
164 PF06866 DUF1256: Protein of u 28.0 1.2E+02 0.0026 26.9 5.0 41 249-289 5-45 (163)
165 PRK04328 hypothetical protein; 27.8 1.9E+02 0.0041 26.9 6.7 54 258-320 118-172 (249)
166 TIGR03029 EpsG chain length de 27.7 70 0.0015 29.9 3.7 14 191-204 133-146 (274)
167 TIGR01861 ANFD nitrogenase iro 27.7 2.2E+02 0.0048 29.9 7.7 70 257-339 116-189 (513)
168 cd01443 Cdc25_Acr2p Cdc25 enzy 27.6 3.1E+02 0.0068 21.7 9.7 11 313-323 99-109 (113)
169 cd02037 MRP-like MRP (Multiple 27.4 65 0.0014 27.7 3.2 15 187-202 26-40 (169)
170 PF06925 MGDG_synth: Monogalac 27.4 68 0.0015 27.8 3.3 24 251-274 72-95 (169)
171 TIGR03453 partition_RepA plasm 27.3 71 0.0015 31.9 3.8 19 187-207 131-149 (387)
172 KOG3838 Mannose lectin ERGIC-5 26.9 51 0.0011 33.3 2.6 23 201-223 167-207 (497)
173 cd01826 acyloxyacyl_hydrolase_ 26.8 1.9E+02 0.0041 28.4 6.5 45 267-311 121-166 (305)
174 TIGR00513 accA acetyl-CoA carb 26.8 2.2E+02 0.0048 28.0 7.0 47 291-338 132-186 (316)
175 cd02065 B12-binding_like B12 b 26.7 2.8E+02 0.006 22.0 6.8 13 265-277 47-59 (125)
176 PRK07004 replicative DNA helic 26.7 1.3E+02 0.0029 30.9 5.8 44 265-317 320-370 (460)
177 KOG4184 Predicted sugar kinase 26.5 69 0.0015 32.1 3.4 23 252-275 223-245 (478)
178 PF13277 YmdB: YmdB-like prote 26.5 1.6E+02 0.0035 28.0 5.8 58 253-324 12-69 (253)
179 PLN02267 enoyl-CoA hydratase/i 26.2 3.1E+02 0.0067 25.3 7.7 67 249-320 24-103 (239)
180 cd00529 RuvC_resolvase Hollida 25.6 4.3E+02 0.0094 22.6 10.7 81 253-341 44-132 (154)
181 COG2845 Uncharacterized protei 25.4 2.4E+02 0.0051 28.1 6.8 100 204-323 132-238 (354)
182 cd07368 PhnC_Bs_like PhnC is a 25.3 2.3E+02 0.0049 27.1 6.8 73 250-323 29-121 (277)
183 cd02071 MM_CoA_mut_B12_BD meth 25.0 1.7E+02 0.0037 24.0 5.2 15 263-277 45-59 (122)
184 PRK06904 replicative DNA helic 24.9 2.3E+02 0.0051 29.3 7.2 42 268-318 334-381 (472)
185 TIGR03815 CpaE_hom_Actino heli 24.8 81 0.0018 30.4 3.7 14 191-204 123-136 (322)
186 COG3172 NadR Predicted ATPase/ 24.6 4.4E+02 0.0095 23.8 7.7 77 260-340 106-184 (187)
187 CHL00072 chlL photochlorophyll 24.5 82 0.0018 30.2 3.6 23 184-208 23-45 (290)
188 PF13050 DUF3911: Protein of u 24.5 28 0.00061 26.1 0.3 8 169-176 26-33 (77)
189 TIGR03446 mycothiol_Mca mycoth 24.5 74 0.0016 30.7 3.2 19 256-274 109-127 (283)
190 PRK09482 flap endonuclease-lik 24.4 3.3E+02 0.0071 25.9 7.5 71 251-325 29-109 (256)
191 PRK06688 enoyl-CoA hydratase; 23.8 3.7E+02 0.0079 24.9 7.8 71 247-320 28-105 (259)
192 COG0825 AccA Acetyl-CoA carbox 23.7 2.6E+02 0.0056 27.4 6.6 50 291-341 131-188 (317)
193 TIGR03445 mycothiol_MshB 1D-my 23.7 95 0.002 29.9 3.8 26 257-282 112-139 (284)
194 PRK10425 DNase TatD; Provision 23.5 6.2E+02 0.013 23.8 11.1 110 175-316 15-126 (258)
195 cd07373 2A5CPDO_A The alpha su 23.5 2.3E+02 0.005 26.9 6.4 72 242-317 13-110 (271)
196 cd01121 Sms Sms (bacterial rad 23.4 1.8E+02 0.004 29.1 5.9 46 264-318 154-207 (372)
197 cd07369 PydA_Rs_like PydA is a 23.2 2.6E+02 0.0056 27.6 6.8 73 250-323 29-126 (329)
198 cd07372 2A5CPDO_B The beta sub 23.1 2.6E+02 0.0056 27.1 6.7 75 250-325 33-126 (294)
199 PF09383 NIL: NIL domain; Int 23.1 13 0.00029 27.9 -1.7 54 258-311 17-70 (76)
200 cd02033 BchX Chlorophyllide re 23.0 86 0.0019 30.9 3.4 20 191-211 60-79 (329)
201 PF00977 His_biosynth: Histidi 22.9 94 0.002 28.7 3.5 49 150-205 10-59 (229)
202 TIGR00583 mre11 DNA repair pro 22.8 3.9E+02 0.0084 27.2 8.2 49 249-305 24-72 (405)
203 cd07367 CarBb CarBb is the B s 22.7 4.6E+02 0.0099 24.8 8.3 82 241-323 13-116 (268)
204 PRK13231 nitrogenase reductase 22.6 61 0.0013 30.1 2.3 22 185-209 26-47 (264)
205 cd02067 B12-binding B12 bindin 22.6 3.8E+02 0.0083 21.4 6.8 15 263-277 45-59 (119)
206 cd08164 MPP_Ted1 Saccharomyces 22.4 3.6E+02 0.0079 24.5 7.1 49 249-307 28-76 (193)
207 PF07355 GRDB: Glycine/sarcosi 22.4 2.2E+02 0.0048 28.4 6.1 58 247-317 56-117 (349)
208 PRK08506 replicative DNA helic 22.2 2.4E+02 0.0051 29.2 6.6 26 293-318 324-349 (472)
209 PRK08258 enoyl-CoA hydratase; 22.2 5.1E+02 0.011 24.4 8.5 70 249-320 42-122 (277)
210 cd01831 Endoglucanase_E_like E 22.1 2.9E+02 0.0063 23.4 6.3 37 269-310 56-93 (169)
211 PRK10966 exonuclease subunit S 22.0 4.9E+02 0.011 26.3 8.7 25 250-275 22-46 (407)
212 cd01824 Phospholipase_B_like P 22.0 5.6E+02 0.012 24.5 8.8 86 238-325 84-176 (288)
213 TIGR02655 circ_KaiC circadian 21.8 2.3E+02 0.005 29.3 6.5 49 262-319 347-397 (484)
214 TIGR00416 sms DNA repair prote 21.8 2.5E+02 0.0054 28.9 6.7 48 262-318 164-219 (454)
215 PRK12319 acetyl-CoA carboxylas 21.5 1.4E+02 0.0031 28.3 4.5 49 290-339 78-134 (256)
216 cd06334 PBP1_ABC_ligand_bindin 21.4 2.7E+02 0.0058 27.0 6.6 34 178-211 124-161 (351)
217 cd06343 PBP1_ABC_ligand_bindin 21.3 5.2E+02 0.011 24.7 8.6 34 178-211 132-165 (362)
218 PF03266 NTPase_1: NTPase; In 21.3 31 0.00066 30.4 -0.1 53 256-321 81-135 (168)
219 cd07402 MPP_GpdQ Enterobacter 21.0 3.5E+02 0.0075 24.3 6.9 57 249-319 20-78 (240)
220 COG1692 Calcineurin-like phosp 21.0 2.1E+02 0.0046 27.3 5.4 58 253-324 15-72 (266)
221 cd01393 recA_like RecA is a b 20.8 3.5E+02 0.0075 24.1 6.8 60 249-318 96-166 (226)
222 PRK11670 antiporter inner memb 20.7 1.1E+02 0.0024 30.6 3.7 23 186-210 133-155 (369)
223 TIGR01890 N-Ac-Glu-synth amino 20.6 1.7E+02 0.0038 29.5 5.2 60 252-323 1-60 (429)
224 COG1082 IolE Sugar phosphate i 20.6 4.4E+02 0.0095 24.1 7.6 61 260-325 50-111 (274)
225 PLN02725 GDP-4-keto-6-deoxyman 20.5 2.8E+02 0.0061 25.6 6.4 52 261-316 42-98 (306)
226 PF06277 EutA: Ethanolamine ut 20.4 8E+02 0.017 25.6 9.8 87 240-340 337-433 (473)
227 PRK13869 plasmid-partitioning 20.3 1.1E+02 0.0024 30.9 3.7 44 59-104 24-70 (405)
228 PLN03229 acetyl-coenzyme A car 20.1 1.1E+03 0.023 26.2 11.0 47 290-337 222-276 (762)
No 1
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.7e-81 Score=607.66 Aligned_cols=301 Identities=29% Similarity=0.423 Sum_probs=275.1
Q ss_pred CceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCccccc
Q 018685 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIII 112 (352)
Q Consensus 33 ~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~~~ 112 (352)
|++.++|++.+..|. .+..|||+|+|++.+.++|++.++...+++++|++++.++|++||+++||++|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~-- 77 (340)
T COG0123 2 MKTALIYHPEFLEHE--PPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG-- 77 (340)
T ss_pred CcceEeeCHHHhcCC--CCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc--
Confidence 578899999998875 4578999999999999999999988888999999999999999999999999999876411
Q ss_pred cCCCccccCCccccccchHHHHHHhcHHHHHHHHHhhh--cccccccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCC
Q 018685 113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI 190 (352)
Q Consensus 113 e~~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~ 190 (352)
...++.||+++++++++|++++|++++|++.+++. ..++++.||||||++++++|||+|||+||||++|+++ ++
T Consensus 78 ---~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~ 153 (340)
T COG0123 78 ---YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GV 153 (340)
T ss_pred ---cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CC
Confidence 23568899999999999999999999999999975 4555666667999999999999999999999999998 88
Q ss_pred CeEEEEeccCcCCchhhhhhcCCCcEEEEEecCC--CCCCCCccc------CCcccccccCCCCCChHHHHHHHHHHHHH
Q 018685 191 SRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYEA------RRFIDQKVEVVSGTTTNEYLKKLDEALEV 262 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~~g~~------~~~~~~NvPL~~g~~d~~yl~~~~~~l~p 262 (352)
+||+|||||||||||||+|||+|++|+|+|+|+. ++|||||.. ++++++|||||+|++|++|+.+|+.++.|
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~y~~a~~~~v~~ 233 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPGTGDDSYLEALEEIVLP 233 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999994 899999752 24699999999999999999999999999
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCC-hHHHHHHHHHHHhhcC
Q 018685 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS-SARVIANSVENLSRKG 341 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~-~~~~~~~~v~~l~~~~ 341 (352)
++++|+||+||||||||+|.+||||.|+||+++|.++++++++++..+++|+++||||||+.+ .++++...+..|.+..
T Consensus 234 ~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~ 313 (340)
T COG0123 234 LLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGLV 313 (340)
T ss_pred HHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999985 5788888888887743
No 2
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=1.9e-80 Score=612.89 Aligned_cols=304 Identities=26% Similarity=0.396 Sum_probs=267.5
Q ss_pred CceeEEEcccc----CcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCc
Q 018685 33 FKLPLIYSPDY----DISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (352)
Q Consensus 33 ~~~~viy~~~~----~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~ 108 (352)
.++.+||++.| ..+. ++.+|||+|+|++.++++|++.|+...+++++|++|+.++|++||+++||++|++....
T Consensus 20 ~~~~~~~~~~y~~~~~~~~--~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 20 GRVALIDTSGYASDMNISA--FVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ceeEEEecCcccccccccc--CCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 45689955554 4443 44689999999999999999999988899999999999999999999999999864221
Q ss_pred cc--cccCCCccccCCccccccchHHHHHHhcHHHHHHHHHhhh--cccccccCCCCCCCCCCCCcccccchHHHHHHHH
Q 018685 109 SI--IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (352)
Q Consensus 109 ~~--~~e~~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l 184 (352)
.. ..+.....+++||++++++++++++++||++.|++.++++ ++|++|+||+|||++++++|||+|||+||||++|
T Consensus 98 ~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~l 177 (429)
T PTZ00346 98 SWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILEL 177 (429)
T ss_pred ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHH
Confidence 10 0111223456899999999999999999999999998854 5899999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCC--CCCCCccc-------CCcccccccCCCCCChHHHHHH
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKK 255 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~--~yP~~g~~-------~~~~~~NvPL~~g~~d~~yl~~ 255 (352)
+++ .+||+|||||||||||||+|||+||+|+|+|+|+.+ |||+||.. +.++++|||||+|++|++|+.+
T Consensus 178 l~~--~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~ 255 (429)
T PTZ00346 178 LKC--HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGL 255 (429)
T ss_pred HHc--CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHH
Confidence 986 479999999999999999999999999999999865 99999752 3568999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCC-hHHHHHHHH
Q 018685 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS-SARVIANSV 334 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~-~~~~~~~~v 334 (352)
|+++|.|++++|+||+||||||||+|++||||+|+||.+||.++++.++ ++++|++++|||||++. .+++|+..+
T Consensus 256 f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~----~~~~plv~vleGGY~~~~lar~w~~~t 331 (429)
T PTZ00346 256 FEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVR----DLGIPMLALGGGGYTIRNVAKLWAYET 331 (429)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHH----hcCCCEEEEeCCcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877664 56899999999999975 499999999
Q ss_pred HHHhhcCCCC
Q 018685 335 ENLSRKGLIN 344 (352)
Q Consensus 335 ~~l~~~~l~~ 344 (352)
..+++..+.+
T Consensus 332 ~~l~g~~i~~ 341 (429)
T PTZ00346 332 SILTGHPLPP 341 (429)
T ss_pred HHHcCCCCCC
Confidence 9999988763
No 3
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=1.8e-79 Score=609.14 Aligned_cols=301 Identities=25% Similarity=0.412 Sum_probs=268.6
Q ss_pred CCceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCcccc
Q 018685 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (352)
Q Consensus 32 ~~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~~ 111 (352)
..++.++|+++|..|..+ .+|||+|.|++.++++|+++|+...+++++|++|+.++|++||+++||++|++.......
T Consensus 3 ~~~v~~~yd~~~~~h~~g--~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~ 80 (436)
T PTZ00063 3 RKRVSYFYDPDIGSYYYG--PGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR 80 (436)
T ss_pred CceEEEEECccccCcCCc--CcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence 456899999999998644 689999999999999999999999899999999999999999999999999976543210
Q ss_pred ---ccCCCcccc--CCccccccchHHHHHHhcHHHHHHHHHhhh--cccccccCCCCCCCCCCCCcccccchHHHHHHHH
Q 018685 112 ---IEVPPVALF--PNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (352)
Q Consensus 112 ---~e~~~~~~~--~~~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l 184 (352)
.......+. +||++++++++.+++++||++.|++.++++ ++|+||+||+|||++++|+|||+|||+||||++|
T Consensus 81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L 160 (436)
T PTZ00063 81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILEL 160 (436)
T ss_pred cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHH
Confidence 001111222 599999999999999999999999998763 5899999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCC-CCCCCccc-------CCcccccccCCCCCChHHHHHHH
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKKL 256 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~-~yP~~g~~-------~~~~~~NvPL~~g~~d~~yl~~~ 256 (352)
++++ +||+|||||||||||||+|||++++|+|+|+|+.+ |||+||.. ++++++|||||+|++|++|+.+|
T Consensus 161 ~~~~--~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f 238 (436)
T PTZ00063 161 LKYH--ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLF 238 (436)
T ss_pred HHhC--CeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHH
Confidence 9864 79999999999999999999999999999999976 99999742 45689999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCC-hHHHHHHHHH
Q 018685 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS-SARVIANSVE 335 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~-~~~~~~~~v~ 335 (352)
+++|.|++++|+||+||+|||||+|.+||||.|+||.+||.++.+. ++++++|+++++||||+.. .+++|+..+.
T Consensus 239 ~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~----~~~~~~pil~l~gGGY~~~~lar~w~~~t~ 314 (436)
T PTZ00063 239 KPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEF----VRSLNIPLLVLGGGGYTIRNVARCWAYETG 314 (436)
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHH----HHhcCCCEEEEeCccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986554 4667999999999999975 4999999998
Q ss_pred HHhhc
Q 018685 336 NLSRK 340 (352)
Q Consensus 336 ~l~~~ 340 (352)
.+++.
T Consensus 315 ~~~~~ 319 (436)
T PTZ00063 315 VILNK 319 (436)
T ss_pred HHhCC
Confidence 88886
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=1.4e-79 Score=593.92 Aligned_cols=288 Identities=29% Similarity=0.469 Sum_probs=228.5
Q ss_pred ccccCcccCCCCCCCCCCchHHHHHHHHHHHc-CCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCcccccc-C---
Q 018685 40 SPDYDISFLGIEKLHPFDSSKWGRICQFLSSE-GFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE-V--- 114 (352)
Q Consensus 40 ~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~-gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~~~e-~--- 114 (352)
||.|. + ..++.|||+|+|++.+.+.|++. ++++. ++++.++|++|||++||+.|++.+......+ .
T Consensus 1 ~~~~~-~--~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~ 71 (311)
T PF00850_consen 1 HPQYQ-H--QLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSP 71 (311)
T ss_dssp ----T-T---CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHH
T ss_pred CCccc-C--CCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccc
Confidence 56776 2 35679999999999999999986 76543 8899999999999999999987654322111 0
Q ss_pred --CCccccCCccccccchHHHHHHhcHHHHHHHHHhh----hcccccccCCCCCCCCCCCCcccccchHHHHHHHHHHHc
Q 018685 115 --PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL 188 (352)
Q Consensus 115 --~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~----~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~ 188 (352)
....-+.|+++++++++++++++|+++.|++.+++ ++||+++|| ||||.+++++|||+||||||||++|++++
T Consensus 72 ~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rpp-gHHA~~~~a~GFC~~Nnvaiaa~~l~~~~ 150 (311)
T PF00850_consen 72 EFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPP-GHHAERDRAMGFCYFNNVAIAAKYLRKKY 150 (311)
T ss_dssp HHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTT
T ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCcc-ccccCcCcCcceeeeccHHHHHHHHhhcc
Confidence 00001578999999999999999999999999994 468999655 59999999999999999999999999988
Q ss_pred CCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecC--CCCCC-CCccc-------CCcccccccCCCCCChHHHHHHHHH
Q 018685 189 NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFN--PGIYP-RDYEA-------RRFIDQKVEVVSGTTTNEYLKKLDE 258 (352)
Q Consensus 189 ~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~--~~~yP-~~g~~-------~~~~~~NvPL~~g~~d~~yl~~~~~ 258 (352)
+++||+|||||+|||||||+|||+|++|+|+|||+ .++|| +||.. +.++++|||||+|++|++|+.+|++
T Consensus 151 ~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~ 230 (311)
T PF00850_consen 151 GLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEE 230 (311)
T ss_dssp TTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHH
T ss_pred ccceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhh
Confidence 99999999999999999999999999999999999 78999 77753 3568999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHHHHHHHH
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIANSVENL 337 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~~~v~~l 337 (352)
+|.|++++|+||+||||||||+|++||+|.|+||+++|.++++.|++++.++++|+|++|||||++++ ++++...+.+|
T Consensus 231 ~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L 310 (311)
T PF00850_consen 231 ILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAAL 310 (311)
T ss_dssp HHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH
T ss_pred ccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998876699999999999864 55555555554
No 5
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-66 Score=494.04 Aligned_cols=306 Identities=27% Similarity=0.425 Sum_probs=274.0
Q ss_pred CCCceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCccc
Q 018685 31 PIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI 110 (352)
Q Consensus 31 ~~~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~ 110 (352)
..+++.+.|+++-..... ..+||+.|.|++.+++++..+||...+++.+|..|+.+|+.++||++||++|++..+...
T Consensus 5 ~k~~V~y~yd~~vg~~~Y--g~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~ 82 (425)
T KOG1342|consen 5 IKRRVSYFYDPDVGNFHY--GQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENM 82 (425)
T ss_pred CCceEEEEecCccccccc--cCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccc
Confidence 456789999999876543 478999999999999999999999999999999999999999999999999998776432
Q ss_pred cc---cCCCccccCCccccccchHHHHHHhcHHHHHHHHHhh--hcccccccCCCCCCCCCCCCcccccchHHHHHHHHH
Q 018685 111 II---EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAF 185 (352)
Q Consensus 111 ~~---e~~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~--~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~ 185 (352)
.. +.....+..||++..++++.+++.+||++.||+.+.+ ..+|+||.||.|||++++|+||||+||+++++..|+
T Consensus 83 ~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLl 162 (425)
T KOG1342|consen 83 ETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELL 162 (425)
T ss_pred cccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHH
Confidence 11 1112346789999999999999999999999987664 358999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCC--CCCCCCcc-------cCCcccccccCCCCCChHHHHHHH
Q 018685 186 VQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYE-------ARRFIDQKVEVVSGTTTNEYLKKL 256 (352)
Q Consensus 186 ~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~~g~-------~~~~~~~NvPL~~g~~d~~yl~~~ 256 (352)
+.+ +||++||+|+|||||+|++||..++|+|+|+|.. +||||||. .++.|.+||||.+|++|+.|..+|
T Consensus 163 K~h--~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if 240 (425)
T KOG1342|consen 163 KYH--KRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIF 240 (425)
T ss_pred HhC--CceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHH
Confidence 874 6999999999999999999999999999999974 59999984 345689999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHHHHHH
Q 018685 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIANSVE 335 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~~~v~ 335 (352)
+.++.++++.|+|++||+|||.|++.+|+||.|+||.+|..+.. ++.+++++|++++++|||+..+ ||+|+-..-
T Consensus 241 ~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv----~fvksfn~pllvlGGGGYT~rNVARcWtYeT~ 316 (425)
T KOG1342|consen 241 KPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECV----KFVKSFNLPLLVLGGGGYTLRNVARCWTYETG 316 (425)
T ss_pred HHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHH----HHHHHcCCcEEEecCCccchhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999754 4557789999999999999754 999998888
Q ss_pred HHhhcCCCC
Q 018685 336 NLSRKGLIN 344 (352)
Q Consensus 336 ~l~~~~l~~ 344 (352)
.+++..+..
T Consensus 317 v~~~~~~~~ 325 (425)
T KOG1342|consen 317 VLLDQELPN 325 (425)
T ss_pred hhcCccccc
Confidence 888877764
No 6
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-60 Score=428.60 Aligned_cols=321 Identities=60% Similarity=1.007 Sum_probs=306.1
Q ss_pred ccccccccCCCceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHh
Q 018685 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSL 102 (352)
Q Consensus 23 ~~~~~~~~~~~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l 102 (352)
-...|+..|..+++++|++.|...+.+++..|||+..++..+.+.|.+.++++.-.+++|.+++++||++|||++|++.+
T Consensus 4 ~~kly~~vp~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLksl 83 (324)
T KOG1344|consen 4 WVKLYDAVPAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSL 83 (324)
T ss_pred eeeecccCccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHh
Confidence 34568899999999999999999989999999999999999999999999999888999999999999999999999999
Q ss_pred hcCCCccccccCCCccccCCccccccchHHHHHHhcHHHHHHHHHhhhcccccccCCCCCCCCCCCCcccccchHHHHHH
Q 018685 103 QSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIH 182 (352)
Q Consensus 103 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~ 182 (352)
+.....+.+.|+|...+.|++++.++.+.+.+..+||++.|+++++++|+|+|.+||+|||..++++|||.|-|+.+|+.
T Consensus 84 r~s~~vA~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~GWAINvGGGFHHcss~rGGGFC~yADItl~I~ 163 (324)
T KOG1344|consen 84 RWSIKVAQITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERGWAINVGGGFHHCSSSRGGGFCAYADITLAIF 163 (324)
T ss_pred hccceeeEEEeccccccCchhhhhhhhccceeeccCceeehhhhhhhcCeEEeecCccceeccCCCCceeehhhHHHHHH
Confidence 98877788899998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCCCCCCCcccCCcccccccCCCCCChHHHHHHHHHHHHH
Q 018685 183 YAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEV 262 (352)
Q Consensus 183 ~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl~~~~~~l~p 262 (352)
.|-++..+.|++|||+|+|+|||.+.-|.++ .|..+.++..-.||+...+++.....|.|..|++|++|+..+++.+..
T Consensus 164 ~lFer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr~iyp~D~~Ak~~Ir~kVEl~~gTeddeYLrkl~r~l~~ 242 (324)
T KOG1344|consen 164 FLFERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNRFIYPRDHVAKESIRCKVELRNGTEDDEYLRKLKRCLMQ 242 (324)
T ss_pred HHHhhhhhhheEEEecccccCCccccccccc-eeehhhhhhhhccchhHHHHHHhhheeeeecCCCchHHHHHHHHHHHH
Confidence 9998888999999999999999999999888 888889999899999887777777889999999999999999999999
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHHHHHHhhcCC
Q 018685 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSVENLSRKGL 342 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~v~~l~~~~l 342 (352)
.+++|+||+||+.||.|...+||||.+.+|++|.-++++.++++++.+++|+|++..|||-..+|++++.+|.+|-+.+|
T Consensus 243 sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGL 322 (324)
T KOG1344|consen 243 SLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGL 322 (324)
T ss_pred HHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 018685 343 IN 344 (352)
Q Consensus 343 ~~ 344 (352)
.+
T Consensus 323 i~ 324 (324)
T KOG1344|consen 323 IN 324 (324)
T ss_pred cC
Confidence 63
No 7
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=7.3e-49 Score=411.94 Aligned_cols=278 Identities=25% Similarity=0.358 Sum_probs=224.6
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCccc---cccCCCccccCCcccccc
Q 018685 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI---IIEVPPVALFPNCLVQRK 128 (352)
Q Consensus 52 ~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~---~~e~~~~~~~~~~~~~~~ 128 (352)
..||+.|.| ....+. .|++.+|+.+ |+.++++.||+..|+..+........ ..+. ......+++.++
T Consensus 463 ~~~~~~p~r---~~t~~~-~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~d 532 (797)
T KOG1343|consen 463 SRSPESPAR---FTTGLH-TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFES--RLPCGGIGVDSD 532 (797)
T ss_pred cCCcccchh---hhcccc-cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhh--hccccceeeccc
Confidence 368999999 222222 7888888776 99999999999999999652211110 0000 011233445556
Q ss_pred chHHHHHHhcHHHHHHHHHhh------hcccccccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCcC
Q 018685 129 VLYPFRKQVGGTILAAKLAKE------RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQ 202 (352)
Q Consensus 129 ~~~~a~~a~G~~l~aa~~~~~------~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~~rV~IiD~DvHH 202 (352)
+|.....++|++..++..+++ .|+|++++|| |||.+..+||||+|||+|||+++++..+..+||+|+||||||
T Consensus 533 t~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvhh 611 (797)
T KOG1343|consen 533 TWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVHH 611 (797)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecccC
Confidence 666666677777666655532 3789999987 999999999999999999999999998878999999999999
Q ss_pred CchhhhhhcCCCcEEEEEecC---CCCCCCCcc-------cCCcccccccCCCCCC-hHHHHHHHHHHHHHHHhhcCCCE
Q 018685 203 GNGHEKDFSSDSRVYILDMFN---PGIYPRDYE-------ARRFIDQKVEVVSGTT-TNEYLKKLDEALEVAGHTFDPEL 271 (352)
Q Consensus 203 GnGTq~if~~d~~Vl~iSiH~---~~~yP~~g~-------~~~~~~~NvPL~~g~~-d~~yl~~~~~~l~p~~~~f~Pdl 271 (352)
|||||.+||+|++|+|+|+|. .+|||++|. .+.++|+|||++.+.. |.+|+.+|+++++|+.++|.||+
T Consensus 612 gngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd~ 691 (797)
T KOG1343|consen 612 GNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPDL 691 (797)
T ss_pred CcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCCe
Confidence 999999999999999999986 468999842 3467999999975554 59999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHHHHHHHHhhcCCC
Q 018685 272 VIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIANSVENLSRKGLI 343 (352)
Q Consensus 272 IvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~~~v~~l~~~~l~ 343 (352)
|+||+|||+..+||||+..+|.++|..+++.++++| ++|++.+|||||+..+ ..+...++++|++...-
T Consensus 692 VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~la---gGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p 761 (797)
T KOG1343|consen 692 VLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLA---GGRVVLALEGGYDLTAISDSAEACVRALLGDSLP 761 (797)
T ss_pred EEEeccccccccCccccccccHhHHHHHHHHHHHhc---CCcEEEEecCCcchhhhhHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999999999998 8999999999999654 56666777777665443
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-37 Score=323.38 Aligned_cols=291 Identities=20% Similarity=0.243 Sum_probs=242.5
Q ss_pred CCCceeEEEccccCcccCCCCCCCC-CCchHHHHHHHHHHHcCCCCCceeeCC-CCCCHHHHhccCChhHHHHhhcCCCc
Q 018685 31 PIFKLPLIYSPDYDISFLGIEKLHP-FDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNV 108 (352)
Q Consensus 31 ~~~~~~viy~~~~~~~~~~~~~~HP-e~p~R~~~i~~~L~~~gl~~~~~~i~p-~~a~~e~l~~vHs~~Yi~~l~~~~~~ 108 (352)
..+++.++|++.+..|....+..|+ +.++|++++.+.+.+.++...+.+..+ +.+++++++.+|+++|++.+......
T Consensus 27 ~~~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~ 106 (797)
T KOG1343|consen 27 QQIQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKM 106 (797)
T ss_pred HhhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhh
Confidence 3568899999999988643444555 899999999999999998877766555 88999999999999999999765522
Q ss_pred cccccC-CCccccCCccccccchHHHHHHhcHHHHHHHHHh----hhcccccccCCCCCCCCCCCCcccccchHHHHHHH
Q 018685 109 SIIIEV-PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAK----ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHY 183 (352)
Q Consensus 109 ~~~~e~-~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~----~~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~ 183 (352)
...... ....-.+..+.++.++..+..+.|+.+...+..+ .++.+.++++| |||.++...|||+|||||++++.
T Consensus 107 ~~e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~~ 185 (797)
T KOG1343|consen 107 TAEEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRSS 185 (797)
T ss_pred cchhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhhc
Confidence 111100 0112357788888999999999999988666544 35678888877 99999999999999999999998
Q ss_pred HHHHcCCCeEEEEeccCcCCchhhhhhcC--CCcEEEEEecC---CCCCCCCc---------ccCCcccccccC-CCCCC
Q 018685 184 AFVQLNISRVMIIDLDAHQGNGHEKDFSS--DSRVYILDMFN---PGIYPRDY---------EARRFIDQKVEV-VSGTT 248 (352)
Q Consensus 184 l~~~~~~~rV~IiD~DvHHGnGTq~if~~--d~~Vl~iSiH~---~~~yP~~g---------~~~~~~~~NvPL-~~g~~ 248 (352)
...+...+||+|+|||+|||+|||..|++ |++|+++|+|. ..|||... +.+.++++|+|+ ..|++
T Consensus 186 ~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~ 265 (797)
T KOG1343|consen 186 PLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMT 265 (797)
T ss_pred cccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCc
Confidence 88776689999999999999999999999 99999999997 46999853 234578999999 47899
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHHhhCC-CCEEEEeCCCCCCCh
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDP-LGMLKISPDGIAARDEKTFRFARSRN-IPIVMLTSGGYMKSS 326 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dp-lg~~~lt~~~y~~~~~~l~~~a~~~~-~~~v~vleGGY~~~~ 326 (352)
|.+|..+|..++.|...+|+||+|++++|||+..+|| +|.|..|+.+|.+++.+ .+. .+ +++++++||||+.+.
T Consensus 266 ~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~-~~~---~~r~~l~v~~e~gy~le~ 341 (797)
T KOG1343|consen 266 DADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSM-HRP---LGRGQLVVVLEGGYFLEK 341 (797)
T ss_pred chhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhcc-ccc---cccCccceecchhHHHHH
Confidence 9999999999999999999999999999999999997 79999999999999886 111 24 899999999998754
No 9
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=89.67 E-value=2.4 Score=37.31 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=46.4
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 240 KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 240 NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
|.... |.+-.+++..+++.+.+.....+||+|+|..|. |....+.. ....+.+.|....+.+.+.++ .+.+++++
T Consensus 42 N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~~~~~~~ii~~~~-~~~~vi~~ 117 (193)
T cd01835 42 NLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRK-RPQLSARAFLFGLNQLLEEAK-RLVPVLVV 117 (193)
T ss_pred eecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCc-ccccCHHHHHHHHHHHHHHHh-cCCcEEEE
Confidence 44443 344556777777666554455899999999999 66554221 234567777776555655543 24566554
No 10
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=86.62 E-value=4.1 Score=35.02 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=31.6
Q ss_pred hcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh--CCCCEEEE
Q 018685 266 TFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVML 317 (352)
Q Consensus 266 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~--~~~~~v~v 317 (352)
.++||+||++.|. |... ..+++.|.+-.+.+.+.+++ .+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQ-------GTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCCC-------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6799999999997 5432 24677777766667776666 46666654
No 11
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=86.31 E-value=4.9 Score=34.50 Aligned_cols=49 Identities=29% Similarity=0.465 Sum_probs=33.9
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
.+..++||+|++..|.. |... ..+.+.|..-.+.+++.+++.+.+++++
T Consensus 59 ~~~~~~pd~v~i~~G~N----D~~~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 59 LLAQHKPDLVILELGGN----DGLR--GIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHhcCCCEEEEeccCc----cccc--CCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 33557999999999973 2222 2567778777777777777667777665
No 12
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=85.70 E-value=5.6 Score=34.57 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
-.+++..+++.+ ...+||+|+++.|. |...+ .+.+.|.+-.+.+.+.+++.+.+++++.
T Consensus 44 ~~~~l~~l~~~~----~~~~~d~v~i~~G~ND~~~~-------~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 44 TSQMLVRFYEDV----IALKPAVVIIMGGTNDIIVN-------TSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHH----HhcCCCEEEEEeccCccccC-------CCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 345665554433 45699999999998 54332 3567777777777777777777766654
No 13
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=84.25 E-value=6.5 Score=34.11 Aligned_cols=61 Identities=33% Similarity=0.382 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.....+.+.+..++ .++||+||+..|. |... -..+.+.|.+..+.+++.++..+.+++++-
T Consensus 51 ~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~------~~~~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 51 RTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR------PGTDPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred hHHHHHHHHHHHHH-hcCCCEEEEecccccccc------CCCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 33333333344443 4699999999998 5432 146677777766666666665566666653
No 14
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=81.71 E-value=3.2 Score=34.82 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=45.1
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 240 KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 240 NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
|.-. .|.+-.+++..+++.+.+ +...+||+||++.|. |...+ .....+.+.|....+.+.+.+...+ +++++.
T Consensus 35 n~~~-~G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~---~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~ 108 (179)
T PF13472_consen 35 NLGV-SGATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG---DENDTSPEQYEQNLRRIIEQLRPHG-PVILVS 108 (179)
T ss_dssp EEE--TT-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC---TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEee-cCccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc---ccccccHHHHHHHHHHHHHhhcccC-cEEEec
Confidence 4444 334445566666665555 588999999999998 55553 2234456666666666666665555 777666
Q ss_pred CCCCC
Q 018685 319 SGGYM 323 (352)
Q Consensus 319 eGGY~ 323 (352)
-=.+.
T Consensus 109 ~~~~~ 113 (179)
T PF13472_consen 109 PPPRG 113 (179)
T ss_dssp -SCSS
T ss_pred CCCcc
Confidence 54443
No 15
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=80.45 E-value=8.9 Score=33.53 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh--CCCCEEEE
Q 018685 246 GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVML 317 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~--~~~~~v~v 317 (352)
|..-.+++..+++ +..++||+|++..|. |... ..+.+.|.+-.+.+++.+++ .+.+++++
T Consensus 50 G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~-------~~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 50 GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTH-------LTSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCC-------CCCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3445666666655 356899999999998 5543 23566676666666666665 35566554
No 16
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=79.08 E-value=21 Score=31.69 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=32.9
Q ss_pred HHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 263 AGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
.+..++||+||+..|. |... .++.+.|.+--+.+.+.+++.+.+++++
T Consensus 66 ~l~~~~pd~Vii~~GtND~~~-------~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 66 LLKQHQPRWVLVELGGNDGLR-------GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HHHhcCCCEEEEEeccCcCcc-------CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3455799999999998 5432 3677777776666777777666555544
No 17
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=79.02 E-value=9.9 Score=33.02 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh--CCCCEEEE
Q 018685 268 DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVML 317 (352)
Q Consensus 268 ~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~--~~~~~v~v 317 (352)
+||+||+..|. |...... .-..+.+.|....+.+.+.+++ .+.+++++
T Consensus 63 ~pd~vii~~G~ND~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQ--PQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred CceEEEEEecCccccCCCC--CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 89999999998 5543211 0235678888777777777766 35666655
No 18
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=78.68 E-value=9.9 Score=32.08 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=28.3
Q ss_pred HHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC
Q 018685 263 AGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR 310 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~ 310 (352)
.+...+||+|+++.|. |...+ .+.+.|.+.-+.+.+.+++.
T Consensus 35 ~~~~~~pd~vvi~~G~ND~~~~-------~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 35 WVLAAKPDVVLLHLGTNDLVLN-------RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred ccccCCCCEEEEeccCcccccC-------CCHHHHHHHHHHHHHHHHHh
Confidence 3456899999999998 44332 45667776666666666654
No 19
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.34 E-value=12 Score=32.32 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEEe
Q 018685 259 ALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLT 318 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~vl 318 (352)
.+.+.+...+||+|+++.|. |.- ....+.+.|.+-.+.+.+.+++. +.+++++.
T Consensus 47 ~~~~~l~~~~pd~Vii~~G~ND~~------~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 47 FLQAQLAALPPDLVILSYGTNEAF------NKQLNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred HHHHHHhhCCCCEEEEECCCcccc------cCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 34445678899999999997 532 22356777777666676666663 45566554
No 20
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=76.88 E-value=1.9 Score=36.83 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=35.0
Q ss_pred CCCCCCCCccccc-----chHHHHHHHHHHHcCCCeEEEEeccCcCCchhhh
Q 018685 162 HCSADEGGGFCAY-----ADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208 (352)
Q Consensus 162 HA~~~~a~GFC~f-----NnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~ 208 (352)
--..-.++|||++ .++-.|++|+-...--+|++-||||.-.=+|-|.
T Consensus 71 dr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 71 DRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred ccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 3345678999987 4666688887544334899999999988888775
No 21
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=76.02 E-value=13 Score=32.82 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 268 DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 268 ~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+||+|+++.|. |+....+ ....+.+.|.+-.+.+.+.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~~--~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDP--EYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCCC--CCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 79999999998 6544321 124567778777777777777777766554
No 22
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=75.75 E-value=8.6 Score=39.71 Aligned_cols=73 Identities=25% Similarity=0.237 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANS 333 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~ 333 (352)
.+.+.|..+.++|+|++|+|.... ....+|. +..+.+ ++.++.+.|++.+--.||..+........
T Consensus 106 kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdD----------i~~v~~---~~~~~~~~pvi~v~t~Gf~g~~~~G~~~a 172 (475)
T PRK14478 106 KLFKAIDEIIEKYAPPAVFVYQTCVVALIGDD----------IDAVCK---RAAEKFGIPVIPVNSPGFVGNKNLGNKLA 172 (475)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccC----------HHHHHH---HHHHhhCCCEEEEECCCcccchhhhHHHH
Confidence 344555566678999988776543 4444442 222222 22234589999999999976544455555
Q ss_pred HHHHhhc
Q 018685 334 VENLSRK 340 (352)
Q Consensus 334 v~~l~~~ 340 (352)
..+++..
T Consensus 173 ~~al~~~ 179 (475)
T PRK14478 173 GEALLDH 179 (475)
T ss_pred HHHHHHH
Confidence 5555553
No 23
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=74.64 E-value=15 Score=37.52 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHh-hCCCCEEEEeCCCCCCChHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFAR-SRNIPIVMLTSGGYMKSSARVIA 331 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~-~~~~~~v~vleGGY~~~~~~~~~ 331 (352)
+.+.+.|..+.+.|+|++|+|.+.. ....+|.+. .+.+.+.+-.. ..+.|++.+-..||.........
T Consensus 77 ~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~----------~v~~~~~~e~p~~~~~pvi~v~tpgf~g~~~~G~~ 146 (432)
T TIGR01285 77 EHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIA----------RVVRQFREKHPQHKGTAVVTVNTPDFKGSLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHH----------HHHHHHHhhcccccCCeEEEecCCCcCCchHHHHH
Confidence 3455566667788999987776554 555666432 22222111000 13789999999999976666777
Q ss_pred HHHHHHhhcCC
Q 018685 332 NSVENLSRKGL 342 (352)
Q Consensus 332 ~~v~~l~~~~l 342 (352)
..+.+++....
T Consensus 147 ~a~~al~~~~~ 157 (432)
T TIGR01285 147 AAVESIIEAWV 157 (432)
T ss_pred HHHHHHHHHHc
Confidence 77777765443
No 24
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=72.69 E-value=22 Score=30.42 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=38.7
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEE
Q 018685 239 QKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIV 315 (352)
Q Consensus 239 ~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v 315 (352)
+|..+...+ -.+++..++ +.+...+||+|++..|. |...+ .+.+.|.+--+.+.+.+++. +.+++
T Consensus 27 ~n~g~~G~t-~~~~~~~~~----~~~~~~~pd~v~i~~G~ND~~~~-------~~~~~~~~~~~~l~~~~~~~~p~~~vi 94 (174)
T cd01841 27 NNLGIAGIS-SRQYLEHIE----PQLIQKNPSKVFLFLGTNDIGKE-------VSSNQFIKWYRDIIEQIREEFPNTKIY 94 (174)
T ss_pred Eeccccccc-HHHHHHHHH----HHHHhcCCCEEEEEeccccCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 566654433 344554442 33356799999999998 65433 26666666555566555543 34444
Q ss_pred E
Q 018685 316 M 316 (352)
Q Consensus 316 ~ 316 (352)
+
T Consensus 95 ~ 95 (174)
T cd01841 95 L 95 (174)
T ss_pred E
Confidence 4
No 25
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.50 E-value=21 Score=31.86 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCC-CCCCcCCHHHHHHHHHHHHHHHhhCCCCEEE
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDP-LGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dp-lg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~ 316 (352)
+.+..|.+.+ +..-+||+|+|..|. |...... -+.-.++.+.|..--+.+.+.+++.+.++++
T Consensus 60 ~~l~r~~~~v---~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 60 SALARFDRDV---LSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HHHHHHHHHH---hcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4455554332 344479999999998 5543321 1122457777877777777878777777664
No 26
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=71.91 E-value=22 Score=30.43 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=30.3
Q ss_pred HhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 018685 264 GHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (352)
Q Consensus 264 ~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~v 317 (352)
+..++||+|++..|. |... ..+.+.|.+--+.+.+.+++. +.+++++
T Consensus 46 ~~~~~p~~vvi~~G~ND~~~-------~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 46 VLPYQPRRVVLYAGDNDLAS-------GRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred hccCCCCEEEEEEecCcccC-------CCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 456899999999998 7543 234666666555566655553 3455444
No 27
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=71.88 E-value=24 Score=36.24 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCCCCCCChHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGYMKSSARVIA 331 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~-~~~~~v~vleGGY~~~~~~~~~ 331 (352)
+.+.+.|..+.+.|+|++|+|.++. ....+|.+ ..+.+.+.+-..+ .+.|++.+--.||..+....+.
T Consensus 78 ~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~ 147 (455)
T PRK14476 78 ENVEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKGALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHH
Confidence 3445556666778999988776554 66666642 2222222111011 2689999999999876566666
Q ss_pred HHHHHHhhcC
Q 018685 332 NSVENLSRKG 341 (352)
Q Consensus 332 ~~v~~l~~~~ 341 (352)
..+++++...
T Consensus 148 ~a~~al~~~~ 157 (455)
T PRK14476 148 AAVEAIVEAL 157 (455)
T ss_pred HHHHHHHHHh
Confidence 6777766543
No 28
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=70.25 E-value=9.8 Score=34.34 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcC
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAG 277 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG 277 (352)
..+.+.+..+.++|++|+||+-++
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346777777777888899999776
No 29
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=68.68 E-value=32 Score=34.18 Aligned_cols=74 Identities=19% Similarity=0.385 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC-CCCCCChHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS-GGYMKSSARVIAN 332 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle-GGY~~~~~~~~~~ 332 (352)
.|++.|..+.+.|+|++|+|..+. -...+|.+ ....+ + + +.+.|++.+=- ||+ .++...+..
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseIIGDDI----------eaVvk---E-~-~~giPVI~V~t~GGf-Gdn~~G~~~ 125 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMIIGEDL----------KEAVD---E-A-DVDAEVIAVEVHAGF-GDNTEGVIA 125 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhhccCCH----------HHHHH---H-h-CCCCCEEEEECCCCC-ccHHHHHHH
Confidence 455666677889999998887664 44444422 22111 1 1 35789999966 888 667777888
Q ss_pred HHHHHhhcCCCC
Q 018685 333 SVENLSRKGLIN 344 (352)
Q Consensus 333 ~v~~l~~~~l~~ 344 (352)
.+.+++..++..
T Consensus 126 aLeAiidq~~i~ 137 (352)
T TIGR03282 126 TLESAAEAGIID 137 (352)
T ss_pred HHHHHHHhCCcC
Confidence 888888877764
No 30
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=67.56 E-value=20 Score=37.02 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCCC-CCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCC
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGTD-ILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS 325 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~D-~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~ 325 (352)
-+++++..++++|+|++|||..++= ...+| ..++. +.++.++.++|||.+-..|+...
T Consensus 84 ~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGd-------Dle~v------a~~~~~~~gipVV~v~~~Gf~~~ 142 (457)
T CHL00073 84 ELKRLCLQIKKDRNPSVIVWIGTCTTEIIKM-------DLEGM------APKLEAEIGIPIVVARANGLDYA 142 (457)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccCcHHhhcc-------CHHHH------HHHHHHhhCCCEEEEeCCCccCc
Confidence 4566777888999999999988751 11122 12222 22333456999999999999833
No 31
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=67.10 E-value=15 Score=33.10 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=28.5
Q ss_pred HhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 018685 264 GHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (352)
Q Consensus 264 ~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~v 317 (352)
+..++||+|||..|. |...+ .+.+.|..--+.+.+.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~~-------~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGHT-------TTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCCC-------CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 356799999999998 44221 26666665555555555553 3444443
No 32
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=66.14 E-value=23 Score=32.36 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCC------HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS------PDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt------~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+.+.+..+.++++|++|||- ++..+... .+....+.+.|.++|++++.+++++-
T Consensus 111 l~~~i~~~~~~~~~~~vvID---------~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 111 IRSRARRLKKEHGLGLIVID---------YLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEc---------CchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 33444455577799999984 33322221 23455677788899999999998876
No 33
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=65.63 E-value=30 Score=35.04 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh----CCCCEEEEeCCCCCCChHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS----RNIPIVMLTSGGYMKSSARV 329 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~----~~~~~v~vleGGY~~~~~~~ 329 (352)
.+.+.|..+.++|+|++|+|..+. =...+|. ...+.+.+ -++ .+.|++.+--+||.-+....
T Consensus 68 ~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~---~~~~p~~~~~~vi~v~t~gf~g~~~~G 134 (417)
T cd01966 68 NLEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQF---RAEHPELADVPVVYVSTPDFEGSLEDG 134 (417)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHH---HhhccccCCCeEEEecCCCCCCcHHHH
Confidence 344555666778999988877664 2223332 22222222 122 37899999999999766777
Q ss_pred HHHHHHHHhhcCC
Q 018685 330 IANSVENLSRKGL 342 (352)
Q Consensus 330 ~~~~v~~l~~~~l 342 (352)
+...+.+++....
T Consensus 135 ~~~a~~al~~~l~ 147 (417)
T cd01966 135 WAAAVEAIIEALV 147 (417)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777775443
No 34
>PRK13236 nitrogenase reductase; Reviewed
Probab=64.68 E-value=7.4 Score=37.44 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcC
Q 018685 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212 (352)
Q Consensus 178 AIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~ 212 (352)
|+-..+++.+.| +||++||+|.+.+| |.-+|..
T Consensus 23 a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~~ 55 (296)
T PRK13236 23 SQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLHS 55 (296)
T ss_pred HHHHHHHHHHCC-CcEEEEEccCCCCc-cchhccC
Confidence 444444455555 69999999999887 6666543
No 35
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=64.57 E-value=11 Score=37.54 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 332 (352)
+.+.+.+..+.++++|++|+|.... ....+|. +..+. .++-.+.+.|++.+--.||..+.......
T Consensus 60 ~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD----------~~~v~---~~~~~~~~~~vi~v~~~gf~~~~~~G~~~ 126 (398)
T PF00148_consen 60 EKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDD----------IEAVA---RELQEEYGIPVIPVHTPGFSGSYSQGYDA 126 (398)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTT----------HHHHH---HHHHHHHSSEEEEEE--TTSSSHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCC----------HHHHH---HHhhcccCCcEEEEECCCccCCccchHHH
Confidence 3455666667788999998876553 4344442 23222 22334457899999999997666667777
Q ss_pred HHHHHhhcC
Q 018685 333 SVENLSRKG 341 (352)
Q Consensus 333 ~v~~l~~~~ 341 (352)
..++++...
T Consensus 127 a~~~l~~~~ 135 (398)
T PF00148_consen 127 ALRALAEQL 135 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 777666543
No 36
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=64.40 E-value=17 Score=36.77 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 332 (352)
..+.+.+..+.+.|+|++|+|.+.. -...+| +...+.+ ++.++.+.|++.+---||..+.......
T Consensus 70 ~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGD----------Di~~v~~---~~~~~~~~pVi~v~tpgf~g~~~~G~~~ 136 (407)
T TIGR01279 70 EELDRVVEQIKRDRNPSVIFLLSSCTPEVIKM----------DLEGLAE---RLSTNFGVPVLFAPASGLDYTFTQGEDT 136 (407)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCchHHHHHh----------hHHHHHH---HHHHhhCCCEEEeeCCCccccHHHHHHH
Confidence 4566777777889999999987663 222333 2222222 2222357899999999997654555666
Q ss_pred HHHHHhh
Q 018685 333 SVENLSR 339 (352)
Q Consensus 333 ~v~~l~~ 339 (352)
.++++++
T Consensus 137 ~~~alv~ 143 (407)
T TIGR01279 137 VLAALVP 143 (407)
T ss_pred HHHHHHH
Confidence 6666665
No 37
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=64.37 E-value=52 Score=32.85 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC-ChHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK-SSARVIA 331 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~-~~~~~~~ 331 (352)
..+.+.|..+.++++|++|+|..+. ....+|. +..+ +.++-++.+.|++.+--.||.. +....+.
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v---~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~ 139 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAV---AKEASKELGIPVIPVNCEGFRGVSQSLGHH 139 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHH---HHHHHHhhCCCEEEEeCCCeeCCcccHHHH
Confidence 3566667777788999987776554 5555553 2222 2222334579999999999987 4455555
Q ss_pred HHHHHHhh
Q 018685 332 NSVENLSR 339 (352)
Q Consensus 332 ~~v~~l~~ 339 (352)
....+++.
T Consensus 140 ~a~~al~~ 147 (406)
T cd01967 140 IANDAILD 147 (406)
T ss_pred HHHHHHHH
Confidence 55555554
No 38
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=64.32 E-value=28 Score=35.30 Aligned_cols=72 Identities=21% Similarity=0.334 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 332 (352)
..+.+.|..+.++|+|++|+|.... ....+|. +..+ +.++ ++.+.|++.+--.||..+.......
T Consensus 72 ~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdD----------i~~v---~~~~-~~~~~~vi~v~t~gf~g~~~~G~~~ 137 (427)
T cd01971 72 DRLRELIKSTLSIIDADLFVVLTGCIAEIIGDD----------VGAV---VSEF-QEGGAPIVYLETGGFKGNNYAGHEI 137 (427)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcC----------HHHH---HHHh-hhcCCCEEEEECCCcCcccccHHHH
Confidence 3455566667788999987765543 5555553 2222 2222 4568899999999999766555555
Q ss_pred HHHHHhh
Q 018685 333 SVENLSR 339 (352)
Q Consensus 333 ~v~~l~~ 339 (352)
.+.+++.
T Consensus 138 a~~al~~ 144 (427)
T cd01971 138 VLKAIID 144 (427)
T ss_pred HHHHHHH
Confidence 5555554
No 39
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=63.79 E-value=28 Score=34.99 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANS 333 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~ 333 (352)
.+.+.|..+.++|+|++|+|.... ....+|. +..+.+. +-++.+.|++.+--.||..+........
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~---~~~~~~~~vi~v~t~gf~g~~~~G~~~a 139 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDD----------IDAVCKT---ASEKFGIPVIPVHSPGFVGNKNLGNKLA 139 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHH---HHHhhCCCEEEEECCCcccChhHHHHHH
Confidence 455566667778999987765543 4444442 2322222 2233488999999999976544455555
Q ss_pred HHHHhh
Q 018685 334 VENLSR 339 (352)
Q Consensus 334 v~~l~~ 339 (352)
..+++.
T Consensus 140 ~~~l~~ 145 (410)
T cd01968 140 CEALLD 145 (410)
T ss_pred HHHHHH
Confidence 555554
No 40
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=63.64 E-value=8.4 Score=35.22 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=15.0
Q ss_pred HHHcCCCeEEEEeccCcCCc
Q 018685 185 FVQLNISRVMIIDLDAHQGN 204 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGn 204 (352)
..+.| +||++||+|.++||
T Consensus 25 la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHCC-CeEEEEeCCCCCcc
Confidence 33445 69999999998887
No 41
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=63.34 E-value=15 Score=38.22 Aligned_cols=73 Identities=15% Similarity=0.325 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 332 (352)
..+.+.|..+.++|+|++|+|..+. ....+|.++.+ .+ ++ ...+.|++.+--.||..........
T Consensus 71 ~~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~~----------~~---~~-~~~~~pvi~v~t~gf~g~~~~g~~~ 136 (511)
T TIGR01278 71 TRLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGNL----------AA---AA-GLDKSKVIVADVNAYRRKENQAADR 136 (511)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHH----------HH---Hh-ccCCCcEEEecCCCcccchhHHHHH
Confidence 3556667777788999988887775 55555544321 11 11 2126899999999998765444455
Q ss_pred HHHHHhhc
Q 018685 333 SVENLSRK 340 (352)
Q Consensus 333 ~v~~l~~~ 340 (352)
.+.+++..
T Consensus 137 al~~lv~~ 144 (511)
T TIGR01278 137 TLTQLVRR 144 (511)
T ss_pred HHHHHHHH
Confidence 55555543
No 42
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=62.84 E-value=32 Score=34.83 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC-ChHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK-SSARVIA 331 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~-~~~~~~~ 331 (352)
+.+.+.|..+.++++|++|+|.... ....+|. +..+ +.++-++.+.|++.+--.||.. +......
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v---~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~ 141 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESV---VEELEDEIGIPVVALHCEGFKGKHWRSGFD 141 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHH---HHHHHHhhCCCEEEEeCCccCCccHhHHHH
Confidence 4566677777788999988877664 4444443 2222 2222334689999999999987 4345555
Q ss_pred HHHHHHhh
Q 018685 332 NSVENLSR 339 (352)
Q Consensus 332 ~~v~~l~~ 339 (352)
..+.+++.
T Consensus 142 ~a~~al~~ 149 (426)
T cd01972 142 AAFHGILR 149 (426)
T ss_pred HHHHHHHH
Confidence 55556554
No 43
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=62.81 E-value=42 Score=29.32 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHhhcCCCEEEEEcCC-CCCCCCCC-CCCcC-C---HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 263 AGHTFDPELVIYNAGT-DILEGDPL-GMLKI-S---PDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG~-D~~~~Dpl-g~~~l-t---~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.+.+.+||+|+++.|. |....-.- +.... + .+.|.+.-+.+.+.+++.+.+++++.
T Consensus 54 ~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~ 115 (200)
T cd01829 54 LIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVG 115 (200)
T ss_pred HHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 3467899999999998 65321111 11111 1 24665555556666666677776653
No 44
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=61.92 E-value=58 Score=30.45 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=23.5
Q ss_pred ccchHH-HHHHHHHHHcCCCeEEEEeccC
Q 018685 173 AYADIS-LCIHYAFVQLNISRVMIIDLDA 200 (352)
Q Consensus 173 ~fNnvA-IAa~~l~~~~~~~rV~IiD~Dv 200 (352)
=+|||. ||+.|+.++.+.++|..||-|.
T Consensus 25 g~G~VG~iA~~~Li~~l~~~~ig~I~s~~ 53 (238)
T TIGR00161 25 GVGLVGNIAGWLLIEDLKLREIGYIDSKY 53 (238)
T ss_pred CCChHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 367776 8899999999999999999753
No 45
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=61.84 E-value=26 Score=35.91 Aligned_cols=71 Identities=24% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANS 333 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~ 333 (352)
.+.+.|..+.++|+|++|+|.... ....+|.+ ..+.+ ++-++.+.|++.+--.||..+........
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi----------~~v~~---e~~~~~~~~vi~v~t~gf~g~~~~G~~~a 174 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDL----------EAVCK---AAAEKTGIPVIPVDSEGFYGSKNLGNKLA 174 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCH----------HHHHH---HHHHHhCCCEEEEECCCCccchhHHHHHH
Confidence 445556666778999987765543 55555533 22222 22233589999999999976544444444
Q ss_pred HHHHh
Q 018685 334 VENLS 338 (352)
Q Consensus 334 v~~l~ 338 (352)
..+++
T Consensus 175 ~~al~ 179 (456)
T TIGR01283 175 CDALL 179 (456)
T ss_pred HHHHH
Confidence 44444
No 46
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=61.46 E-value=23 Score=35.54 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 332 (352)
.-+++.|..+.++|+|++|+|.... ....+|.+ ..+. .++-++.+.|++.+--.||..+....+..
T Consensus 73 ~~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi----------~~v~---~~~~~~~~~pvi~v~t~gf~g~~~~G~~~ 139 (396)
T cd01979 73 AELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDL----------EGAA---PRLSAEIGVPILVASASGLDYTFTQGEDT 139 (396)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCH----------HHHH---HHHhhcCCCcEEEeeCCCccccHHHHHHH
Confidence 3455667777888999988776553 44444432 2221 12223357899999999997655566666
Q ss_pred HHHHHhh
Q 018685 333 SVENLSR 339 (352)
Q Consensus 333 ~v~~l~~ 339 (352)
.+++++.
T Consensus 140 ~~~alv~ 146 (396)
T cd01979 140 VLAALVP 146 (396)
T ss_pred HHHHHhh
Confidence 7777765
No 47
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=61.42 E-value=2.3e+02 Score=30.29 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=86.6
Q ss_pred CCCcccccc---hHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCCCCCCCccc-C-Ccccc-c
Q 018685 167 EGGGFCAYA---DISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEA-R-RFIDQ-K 240 (352)
Q Consensus 167 ~a~GFC~fN---nvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~~g~~-~-~~~~~-N 240 (352)
...++|-++ +..+|-+ .+.. |+ - ..||+|.|-=|++..+|..+|--.-+|- --||+|++. . .++-. -
T Consensus 312 ~~~~~~~~~~~dd~e~a~~-I~~d-~I-d-ILvDl~g~T~d~r~~v~A~RpAPiqvsw---lGy~aT~g~p~~DY~I~D~ 384 (620)
T COG3914 312 AVEKWYPIGRMDDAEIANA-IRTD-GI-D-ILVDLDGHTVDTRCQVFAHRPAPIQVSW---LGYPATTGSPNMDYFISDP 384 (620)
T ss_pred hhhheeccCCcCHHHHHHH-HHhc-CC-e-EEEeccCceeccchhhhhcCCCceEEee---cccccccCCCcceEEeeCc
Confidence 345788888 5555433 3332 33 2 5689999999999999999998888873 457887652 1 11110 0
Q ss_pred ccCCCCCChHHHHHHHHHHH---HHHHhhc--------------CCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHH
Q 018685 241 VEVVSGTTTNEYLKKLDEAL---EVAGHTF--------------DPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKT 303 (352)
Q Consensus 241 vPL~~g~~d~~yl~~~~~~l---~p~~~~f--------------~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l 303 (352)
.-+|+. ...-|-+.+-++= .|. +.| .+|.+|+.|| -+.++.|++-+..-.+.
T Consensus 385 y~vPp~-ae~yysEkl~RLp~cy~p~-d~~~~v~p~~sR~~lglp~~avVf~c~--------~n~~K~~pev~~~wmqI- 453 (620)
T COG3914 385 YTVPPT-AEEYYSEKLWRLPQCYQPV-DGFEPVTPPPSRAQLGLPEDAVVFCCF--------NNYFKITPEVFALWMQI- 453 (620)
T ss_pred eecCch-HHHHHHHHHHhcccccCCC-CCcccCCCCcchhhcCCCCCeEEEEec--------CCcccCCHHHHHHHHHH-
Confidence 112332 2334444443321 011 111 2457777777 45678889888765443
Q ss_pred HHHHhhCCCCEEEEeCCCCCCChHHHHHHHHHHHhhc
Q 018685 304 FRFARSRNIPIVMLTSGGYMKSSARVIANSVENLSRK 340 (352)
Q Consensus 304 ~~~a~~~~~~~v~vleGGY~~~~~~~~~~~v~~l~~~ 340 (352)
.++--.-+++++.||=+. .+.+-++.+.+.
T Consensus 454 ---L~~vP~Svl~L~~~~~~~----~~~~~l~~la~~ 483 (620)
T COG3914 454 ---LSAVPNSVLLLKAGGDDA----EINARLRDLAER 483 (620)
T ss_pred ---HHhCCCcEEEEecCCCcH----HHHHHHHHHHHH
Confidence 344445589999999332 244555555544
No 48
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.29 E-value=22 Score=30.61 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=31.4
Q ss_pred hhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHh--hCCCCEEEE
Q 018685 265 HTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFAR--SRNIPIVML 317 (352)
Q Consensus 265 ~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~--~~~~~~v~v 317 (352)
...+||+|+++.|. |...+.+ -..+++.|..-.+.+++.++ ..+.+++++
T Consensus 58 ~~~~~d~v~l~~G~ND~~~~~~---~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 58 LPAKPDVVSIMFGINDSFRGFD---DPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred ccCCCCEEEEEeecchHhhccc---ccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 45789999999998 5544322 13467777666666666664 234555554
No 49
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=58.62 E-value=12 Score=33.99 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCC-chh--hhhhcCCCcEEEEEecCCCCCCCCcccCCc--ccccccCCCCCChHHH
Q 018685 178 SLCIHYAFVQLNISRVMIIDLDAHQG-NGH--EKDFSSDSRVYILDMFNPGIYPRDYEARRF--IDQKVEVVSGTTTNEY 252 (352)
Q Consensus 178 AIAa~~l~~~~~~~rV~IiD~DvHHG-nGT--q~if~~d~~Vl~iSiH~~~~yP~~g~~~~~--~~~NvPL~~g~~d~~y 252 (352)
-+|+.|+.++.+.++|..||-|-+.- .|. .-.+.++.+.+. +...+|=.++ .+- ...+.|.|++ +
T Consensus 13 ~la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~---~~~~iy~~~~--~~i~vl~~~~p~~~~-----~ 82 (219)
T PF09754_consen 13 QLAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILS---PPLEIYYSED--SKILVLQGRSPIPPG-----R 82 (219)
T ss_dssp HHHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB----SEEEEEEEC--TTEEEEEESSE--SC-----G
T ss_pred HHHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceec---cceEEEEECC--CCEEEEEecCCCCch-----H
Confidence 46899999999999999999954442 221 111111100110 0000110000 011 1124566653 2
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCC
Q 018685 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGD 284 (352)
Q Consensus 253 l~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~D 284 (352)
...|-+.+...+++++..-||+-.|+++....
T Consensus 83 ~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~ 114 (219)
T PF09754_consen 83 WYEFAEELLDWIKSFGVKEVIVLGGLPAMEPH 114 (219)
T ss_dssp HHHHHHHHHHHHHHTTECEEEEEEEEEESS-T
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCc
Confidence 33444446667789999999999999988865
No 50
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=58.27 E-value=42 Score=33.96 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHh----hCCCCEEEEeCCCCCCChHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFAR----SRNIPIVMLTSGGYMKSSARV 329 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~----~~~~~~v~vleGGY~~~~~~~ 329 (352)
.+.+.|..+.+.++|++|+|... .....+|.+ ..+. .++-+ ..+.|++.+--.||..+....
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi----------~~v~---~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G 134 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDDV----------AGFI---KEFRAEGPEPADFPVVYASTPSFKGSHETG 134 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCCH----------HHHH---HHHHhhccCCCCCeEEEeeCCCCCCcHHHH
Confidence 45556666778899997666544 355555542 2221 22222 257889999899998765566
Q ss_pred HHHHHHHHhhc
Q 018685 330 IANSVENLSRK 340 (352)
Q Consensus 330 ~~~~v~~l~~~ 340 (352)
....+.+++..
T Consensus 135 ~~~a~~al~~~ 145 (428)
T cd01965 135 YDNAVKAIIEQ 145 (428)
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 51
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=58.25 E-value=57 Score=26.61 Aligned_cols=57 Identities=26% Similarity=0.279 Sum_probs=34.6
Q ss_pred HHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh--CCCCEEEEeCCCCC
Q 018685 262 VAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS--RNIPIVMLTSGGYM 323 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~--~~~~~v~vleGGY~ 323 (352)
......+||+|+++.|. |..... ..+.+.|....+.+++.+.+ .+.+++++.---+.
T Consensus 59 ~~~~~~~~d~vil~~G~ND~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~ 118 (187)
T cd00229 59 LALLKDKPDLVIIELGTNDLGRGG-----DTSIDEFKANLEELLDALRERAPGAKVILITPPPPP 118 (187)
T ss_pred hhhccCCCCEEEEEeccccccccc-----ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCC
Confidence 34477899999999997 443221 34455555555555555553 35566666555443
No 52
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=58.05 E-value=23 Score=35.79 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANS 333 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~ 333 (352)
.+++.|..+.++|+|++|+|... .....+|.+ ..+.+. +-++.+.|++.+--.||..+........
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~---~~~~~~~~vi~v~t~gf~g~~~~g~~~a 138 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRA---AGLSSKSPVLPLDVNHYRVNELQAADET 138 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHH---hhhccCCCeEEecCCCccchHHHHHHHH
Confidence 45555666678899998887766 355555533 222222 2233588999999999987654555555
Q ss_pred HHHHhhc
Q 018685 334 VENLSRK 340 (352)
Q Consensus 334 v~~l~~~ 340 (352)
+.+++..
T Consensus 139 l~~l~~~ 145 (430)
T cd01981 139 FEQLVRF 145 (430)
T ss_pred HHHHHHH
Confidence 5555544
No 53
>PRK08760 replicative DNA helicase; Provisional
Probab=57.93 E-value=26 Score=36.28 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+..+.+++++++||| |.|+-+.. ....+.++.+.|+.+|+++++||+++-
T Consensus 331 ~r~l~~~~~~~lVvI---------DyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ls 386 (476)
T PRK08760 331 CRRLKREHDLGLIVI---------DYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALS 386 (476)
T ss_pred HHHHHHhcCCCEEEE---------ecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 344446688999887 44443321 234577899999999999999998764
No 54
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=56.88 E-value=15 Score=35.43 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=40.0
Q ss_pred HHHHHhhcCCCEEEEEcCC---CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEE
Q 018685 260 LEVAGHTFDPELVIYNAGT---DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~---D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~ 316 (352)
+..++++.+||+||-+|.+ |..+.+|.--+.+...+=. .+.+.|.+.|.++|-
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~----~lA~aa~~~ga~lVh 97 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAE----NLARAAAEVGARLVH 97 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHH----HHHHHHHHhCCeEEE
Confidence 4566678899999999986 8888888766666555544 466777888888764
No 55
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=56.70 E-value=32 Score=34.76 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
..+..+.+++++++||| |+++.+.. ......++.+.|..+|+++++|++++-
T Consensus 295 ~~i~~~~~~~~~~~vvI---------D~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~ls 352 (434)
T TIGR00665 295 AKARRLKREHGLGLIVI---------DYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALS 352 (434)
T ss_pred HHHHHHHHhcCCCEEEE---------cchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 34445556788999997 44443322 123467778889999999999998876
No 56
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=55.68 E-value=31 Score=33.19 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI 291 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l 291 (352)
+.+.+++++++||++|+ .|-|+...+.-....|
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl 175 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDL 175 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhh
Confidence 35667889999998876 8999998664443333
No 57
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=55.30 E-value=54 Score=34.29 Aligned_cols=72 Identities=7% Similarity=0.190 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 332 (352)
+.|.+.|..+.++|+|++|+|..++ =...+| +...+.+. +-.+.+.|++.+--.||..+.......
T Consensus 71 ~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGD----------Di~~v~~~---~~~~~~~pVi~v~t~~f~g~~~~g~~~ 137 (513)
T CHL00076 71 EKVVDNITRKDKEERPDLIVLTPTCTSSILQE----------DLQNFVDR---ASIESDSDVILADVNHYRVNELQAADR 137 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCchhhhhc----------CHHHHHHH---hhcccCCCEEEeCCCCCcccHHHHHHH
Confidence 3455556667789999999998774 112222 22222222 112357899999999998755333333
Q ss_pred HHHHHh
Q 018685 333 SVENLS 338 (352)
Q Consensus 333 ~v~~l~ 338 (352)
.+.+++
T Consensus 138 ~l~~lv 143 (513)
T CHL00076 138 TLEQIV 143 (513)
T ss_pred HHHHHH
Confidence 444444
No 58
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.17 E-value=70 Score=28.31 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=27.7
Q ss_pred hcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC
Q 018685 266 TFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR 310 (352)
Q Consensus 266 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~ 310 (352)
..+||+|++..|. |... .+.++.+.|.+-.+.+.+.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 3699999999998 6542 23456777776666666666553
No 59
>PRK05595 replicative DNA helicase; Provisional
Probab=54.99 E-value=27 Score=35.58 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=33.1
Q ss_pred HHhhcCCCEEEEEcCCCCCCCCCCCCCc------CCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 263 AGHTFDPELVIYNAGTDILEGDPLGMLK------ISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~------lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+..+.++|+||| |.++-+. -....+.++++.|+.+|+++++||+++
T Consensus 306 ~~~~~~~~~vvI---------Dylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~l 357 (444)
T PRK05595 306 LKIEHGIDMILI---------DYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIAL 357 (444)
T ss_pred HHHhcCCCEEEE---------eHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 345678999987 3333332 123467888999999999999998875
No 60
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=54.25 E-value=42 Score=34.30 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCC-CEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHH
Q 018685 255 KLDEALEVAGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIA 331 (352)
Q Consensus 255 ~~~~~l~p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~ 331 (352)
.+.+.|..+.+.++| ++|+|.... ....+| ++..+.+ ++-++.+.|++.+--.||...+ ...+.
T Consensus 104 ~L~~aI~~~~~~~~p~~~I~V~~tC~~~liGd----------Di~~v~~---~~~~~~~~pvi~v~t~gf~g~~~~~G~~ 170 (443)
T TIGR01862 104 KLKKLIHEAFTEFPLIKAISVYATCPTGLIGD----------DIEAVAK---EVSKEIGKDVVAVNCPGFAGVSQSKGHH 170 (443)
T ss_pred HHHHHHHHHHHhCCccceEEEECCChHHHhcc----------CHHHHHH---HHHHhcCCCEEEEecCCccCCccchHHH
Confidence 455666667788999 987776553 333333 2332222 2223457899999999998633 34555
Q ss_pred HHHHHHhhcC
Q 018685 332 NSVENLSRKG 341 (352)
Q Consensus 332 ~~v~~l~~~~ 341 (352)
..+.+++...
T Consensus 171 ~a~~al~~~l 180 (443)
T TIGR01862 171 IANIAVINDK 180 (443)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 61
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.36 E-value=43 Score=34.02 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC----CCCEEEEeCCCCCCChHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR----NIPIVMLTSGGYMKSSAR 328 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~----~~~~v~vleGGY~~~~~~ 328 (352)
+.+.+.|..+.++++|++|+|..+. ....+|. +..+.+.+ -++. +.|++.+--.||..+...
T Consensus 71 ~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdD----------i~~v~~~~---~~~~~~~~~~~vi~v~tpgf~gs~~~ 137 (435)
T cd01974 71 NNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDD----------LNAFIKNA---KNKGSIPADFPVPFANTPSFVGSHIT 137 (435)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHhhhhcc----------HHHHHHHH---HHhccCCCCCeEEEecCCCCccCHHH
Confidence 3455666667788999987765543 4444442 22221111 1122 567777777777765555
Q ss_pred HHHHHHHHHhh
Q 018685 329 VIANSVENLSR 339 (352)
Q Consensus 329 ~~~~~v~~l~~ 339 (352)
.....+.+++.
T Consensus 138 G~~~a~~al~~ 148 (435)
T cd01974 138 GYDNMVKGILT 148 (435)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 62
>PRK09165 replicative DNA helicase; Provisional
Probab=53.27 E-value=36 Score=35.42 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCCcC--------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKI--------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l--------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.+.+++++++||| |.++-+.- ..+.+.++.+.|..+|+++++||+++-
T Consensus 335 ~l~~~~~~~lvvI---------DyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~ls 390 (497)
T PRK09165 335 RLKRQHGLDLLVV---------DYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALS 390 (497)
T ss_pred HHHHhcCCCEEEE---------cchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEee
Confidence 3445688999887 44443321 123578889999999999999998764
No 63
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=52.78 E-value=28 Score=32.43 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCC-------HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS-------PDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt-------~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+.+..++.+++|++||| |+++.+.-. ...+.++.+.|.++|++++++++++-
T Consensus 130 ~~i~~~~~~~~~~~vvI---------D~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 130 EKVRYMAVSHGIQHIII---------DNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHHHhcCCceEEEE---------CCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 33444556789999997 555443221 12345666778889999999888775
No 64
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=52.64 E-value=49 Score=33.99 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhc-CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC-CCEEEEeCCCCCCCh-HHHH
Q 018685 255 KLDEALEVAGHTF-DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN-IPIVMLTSGGYMKSS-ARVI 330 (352)
Q Consensus 255 ~~~~~l~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~-~~~v~vleGGY~~~~-~~~~ 330 (352)
.|.+.|..+.+.| +|++|+|.... ....+|. +..+ +.++.++.+ .|++.+--.||...+ ....
T Consensus 111 kL~~aI~e~~~~~p~p~~I~V~stC~~~lIGDD----------i~~v---~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~ 177 (457)
T TIGR01284 111 KLKRCILEAFREFPEIKRMYTYATCTTALIGDD----------IDAI---AREVMEEIPDVDVFAINAPGFAGPSQSKGH 177 (457)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCChHHhhccC----------HHHH---HHHHHHhcCCCeEEEeeCCCcCCcccchHH
Confidence 4445555566778 79987776654 4444442 2222 222334454 899999999988632 3344
Q ss_pred HHHHHHHhhcCC
Q 018685 331 ANSVENLSRKGL 342 (352)
Q Consensus 331 ~~~v~~l~~~~l 342 (352)
.....+++....
T Consensus 178 ~~a~~al~~~l~ 189 (457)
T TIGR01284 178 HVANITWINDKV 189 (457)
T ss_pred HHHHHHHHHHHh
Confidence 444445554433
No 65
>PRK05973 replicative DNA helicase; Provisional
Probab=52.63 E-value=33 Score=32.23 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCc--CCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLK--ISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~--lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
++..+.+++++++||| |.++.+. .....+.+..+.+..+|++++++++++-
T Consensus 138 ii~~l~~~~~~~lVVI---------DsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~s 190 (237)
T PRK05973 138 IIARLASAPRGTLVVI---------DYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFIS 190 (237)
T ss_pred HHHHHHHhhCCCEEEE---------EcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3444555788999987 4555332 2233466667778899999999988764
No 66
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=52.34 E-value=69 Score=32.32 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhc-CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC-CCEEEEeCCCCCCCh-HHHH
Q 018685 255 KLDEALEVAGHTF-DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN-IPIVMLTSGGYMKSS-ARVI 330 (352)
Q Consensus 255 ~~~~~l~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~-~~~v~vleGGY~~~~-~~~~ 330 (352)
.+.+.|..+.++| +|++|+|.... ....+|. +..+.+ ++-++.+ .|++.+--.||...+ ...+
T Consensus 74 ~L~~aI~~~~~~~p~p~~i~V~~tc~~~liGdD----------i~~v~~---~~~~~~~~~~vi~v~tpgf~g~~~~~G~ 140 (415)
T cd01977 74 KLKKNIIEAFKEFPDIKRMTVYTTCTTALIGDD----------IKAVAK---EVMEELPDVDIFVCNAPGFAGPSQSKGH 140 (415)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCchhhhcCC----------HHHHHH---HHHHhcCCCeEEEEeCCCcCCcchhHHH
Confidence 4445555566778 79877776553 4444442 222222 2223345 899999999998543 3345
Q ss_pred HHHHHHHhhcCC
Q 018685 331 ANSVENLSRKGL 342 (352)
Q Consensus 331 ~~~v~~l~~~~l 342 (352)
...+.+++...+
T Consensus 141 ~~a~~al~~~l~ 152 (415)
T cd01977 141 HVLNIAWINQKV 152 (415)
T ss_pred HHHHHHHHHHhh
Confidence 444555555443
No 67
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=52.31 E-value=42 Score=32.10 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
+|.+.|++.+ |-+..|+-..+||-.|-.+..+| .+..+.+.+..+ .+.+.++|+|.+||...
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~----------~l~~~~~~ia~l-~~~g~~~ViVHGggp~i 62 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP----------NFDNIVHDIALL-HSLGIRLVLVHGARPQI 62 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc----------hHHHHHHHHHHH-HHCCCcEEEEeCCCHHH
Confidence 4777888875 45699999999999987776643 222233334333 33478999999999853
No 68
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=52.05 E-value=94 Score=27.49 Aligned_cols=65 Identities=22% Similarity=0.349 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
.++...+|++++..+ .+.+||+||+ +| |=+.....+.+.+.++.+.+.++. +.+.|+.++. |.-+
T Consensus 23 ~~~~~~~~~~~~~~~-~~~~~d~i~~-~G------D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~-GNHD 87 (223)
T cd00840 23 REDQFEAFEEIVELA-IEEKVDFVLI-AG------DLFDSNNPSPEALELLIEALRRLK-EAGIPVFIIA-GNHD 87 (223)
T ss_pred hHHHHHHHHHHHHHH-HhcCCCEEEE-CC------cccCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEec-CCCC
Confidence 467788888887665 6779998775 33 333333344555555555444432 1366765554 4433
No 69
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=51.47 E-value=20 Score=33.71 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=15.1
Q ss_pred HHHcCCCeEEEEeccCcCCchhhh
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHEK 208 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq~ 208 (352)
+.+.| +||++||+|.+ ||.|..
T Consensus 24 La~~G-~~VlliD~D~q-~~~~~~ 45 (275)
T TIGR01287 24 LAEMG-KKVMIVGCDPK-ADSTRL 45 (275)
T ss_pred HHHCC-CeEEEEeCCCC-CCcccc
Confidence 33445 69999999997 444543
No 70
>PHA02518 ParA-like protein; Provisional
Probab=51.45 E-value=21 Score=31.64 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=15.4
Q ss_pred HHHcCCCeEEEEeccCcCCchhhh
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHEK 208 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq~ 208 (352)
..+.| +||++||+|. +++-++.
T Consensus 25 la~~g-~~vlliD~D~-q~~~~~~ 46 (211)
T PHA02518 25 LHADG-HKVLLVDLDP-QGSSTDW 46 (211)
T ss_pred HHhCC-CeEEEEeCCC-CCChHHH
Confidence 33445 6999999996 5666654
No 71
>PRK10818 cell division inhibitor MinD; Provisional
Probab=51.14 E-value=18 Score=33.72 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=15.6
Q ss_pred HcCCCeEEEEeccCcCCchhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq 207 (352)
+.| +||++||+|.+.||-+.
T Consensus 29 ~~g-~~vllvD~D~~~~~~~~ 48 (270)
T PRK10818 29 QKG-KKTVVIDFDIGLRNLDL 48 (270)
T ss_pred HCC-CeEEEEECCCCCCChhh
Confidence 345 79999999998887543
No 72
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=50.61 E-value=1e+02 Score=31.27 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh---CCCCEEEEeCCCCCCChHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFARS---RNIPIVMLTSGGYMKSSARV 329 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~---~~~~~v~vleGGY~~~~~~~ 329 (352)
+.+.+.|..+.+.++|++|+|... .....+|. +..+.+.+ -++ .+.|++.+--.||..+....
T Consensus 70 ~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~---~~~~~~~~~~vi~v~t~gF~g~~~~G 136 (429)
T cd03466 70 KNLKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREF---REEVDDSEPKIIPASTPGYGGTHVEG 136 (429)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHH---hhcccCCCCcEEEEECCCCcccHHHH
Confidence 355566677778899998766544 35555553 22222211 121 35688888888887655556
Q ss_pred HHHHHHHHhh
Q 018685 330 IANSVENLSR 339 (352)
Q Consensus 330 ~~~~v~~l~~ 339 (352)
+...+.+++.
T Consensus 137 ~~~a~~al~~ 146 (429)
T cd03466 137 YDTAVRSIVK 146 (429)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 73
>PRK05636 replicative DNA helicase; Provisional
Probab=50.52 E-value=43 Score=35.02 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+..+..++++++||| |.|+-+.- ....+.++++.|+.+|+++++||+++
T Consensus 367 ~r~~~~~~~~~lvvI---------DYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~l 421 (505)
T PRK05636 367 ARRLKQKHDLKLIVV---------DYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAI 421 (505)
T ss_pred HHHHHHhcCCCEEEE---------cchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 333445678899887 55544431 12457788999999999999998875
No 74
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=49.82 E-value=87 Score=35.29 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh----CCCCEEEEeCCCCCCChHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS----RNIPIVMLTSGGYMKSSARV 329 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~----~~~~~v~vleGGY~~~~~~~ 329 (352)
.|++.|..+.+.|+|++|+|..+. =...+| +...+.+ ++-++ .+.|++.+--.||.-+....
T Consensus 558 ~L~~~I~~~~~~~~p~~I~V~tTc~~eiIGD----------Di~~vi~---~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G 624 (917)
T PRK14477 558 NLKQGILRVIEKFKPKVIGVMTTGLTETMGD----------DVRSAIV---QFREEHPELDDVPVVWASTPDYCGSLQEG 624 (917)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHhhhhc----------CHHHHHH---HHHhhccccCCCeEEEeeCCCCccCHHHH
Confidence 456667777889999988887653 222233 2222222 22222 26799999999998766777
Q ss_pred HHHHHHHHhhcC
Q 018685 330 IANSVENLSRKG 341 (352)
Q Consensus 330 ~~~~v~~l~~~~ 341 (352)
+...+.+++...
T Consensus 625 ~~~a~~aiv~~~ 636 (917)
T PRK14477 625 YAAAVEAIVATL 636 (917)
T ss_pred HHHHHHHHHHHh
Confidence 777887877643
No 75
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=49.59 E-value=21 Score=27.93 Aligned_cols=55 Identities=13% Similarity=0.332 Sum_probs=30.9
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHhhcCCC-EEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 241 VEVVSGTTTNEYLKKLDEALEVAGHTFDPE-LVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 241 vPL~~g~~d~~yl~~~~~~l~p~~~~f~Pd-lIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
|-+|||++|.- +..++. ...+ .|+|..-.+ ++..+-. +..+++++.++|++.+.|
T Consensus 6 iD~PPGTgD~~-l~~~~~--------~~~~g~ivVTTPq~-----------la~~dv~----r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQY--------LPIDGAIVVTTPQE-----------LALADVR----RAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHHH--------H--SEEEEEE-CCC-------------HHHHH----HHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHHh--------CCCCeEEEEeCCHH-----------HHHHHHH----HHHHHHHhcCCCcEEEEE
Confidence 45799998854 444432 2244 788877654 4444444 456677888999998776
No 76
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=49.38 E-value=74 Score=31.61 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 248 TTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 248 ~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
-.+++..+|.+++.-+ .+-++|+||+ .||=+=.-+-+++.-....+.+.++. ..++|+++ +.|.-+.
T Consensus 21 r~~d~~~~f~~~l~~a-~~~~vD~vli-------AGDlFd~~~Ps~~a~~~~~~~l~~l~-~~~Ipv~~-I~GNHD~ 87 (390)
T COG0420 21 RLEDQKKAFDELLEIA-KEEKVDFVLI-------AGDLFDTNNPSPRALKLFLEALRRLK-DAGIPVVV-IAGNHDS 87 (390)
T ss_pred chHHHHHHHHHHHHHH-HHccCCEEEE-------ccccccCCCCCHHHHHHHHHHHHHhc-cCCCcEEE-ecCCCCc
Confidence 4678899999988766 7779999997 46766667788888877776665553 35788765 4565543
No 77
>CHL00175 minD septum-site determining protein; Validated
Probab=49.22 E-value=21 Score=33.66 Aligned_cols=20 Identities=35% Similarity=0.312 Sum_probs=16.2
Q ss_pred HcCCCeEEEEeccCcCCchhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq 207 (352)
+.| +||++||+|..+||-+.
T Consensus 42 ~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 42 RLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred hCC-CeEEEEeCCCCCCChhh
Confidence 345 69999999999988664
No 78
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.78 E-value=62 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.5
Q ss_pred HHHhhcCCCEEEEEcCCC
Q 018685 262 VAGHTFDPELVIYNAGTD 279 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~D 279 (352)
..+...+||+||+..|..
T Consensus 51 ~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 51 ELLRDVPADLYIIDCGPN 68 (177)
T ss_pred HHHHhcCCCEEEEEeccC
Confidence 444567999999999984
No 79
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=48.67 E-value=18 Score=34.00 Aligned_cols=23 Identities=4% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHcCCCeEEEEeccCcCCchhhhhh
Q 018685 186 VQLNISRVMIIDLDAHQGNGHEKDF 210 (352)
Q Consensus 186 ~~~~~~rV~IiD~DvHHGnGTq~if 210 (352)
.+.| +||++||+|.+..+ |..++
T Consensus 26 a~~G-~rVllvD~Dpq~~~-~~~l~ 48 (273)
T PRK13232 26 STMG-NKILLVGCDPKADS-TRMLL 48 (273)
T ss_pred HhhC-CCeEEEeccccccc-chhhc
Confidence 3345 69999999998765 44443
No 80
>PHA02542 41 41 helicase; Provisional
Probab=48.52 E-value=77 Score=32.86 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCc---------CCHHHHHHHHHHHHHHHhhCCCCEE
Q 018685 245 SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLK---------ISPDGIAARDEKTFRFARSRNIPIV 315 (352)
Q Consensus 245 ~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~---------lt~~~y~~~~~~l~~~a~~~~~~~v 315 (352)
++.+-.+....++++... ..+++|+|||- .|.-+. =..+.+..+.+.|..+|+++++||+
T Consensus 280 ~~lt~~~ir~~~rrlk~~--~g~~~dlVvID---------YLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi 348 (473)
T PHA02542 280 GGAHAGHFRALLNELKLK--KNFKPDVIIVD---------YLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVW 348 (473)
T ss_pred CCCCHHHHHHHHHHHHHh--cCCCCCEEEEe---------chhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEE
Confidence 455555665555554321 33459999873 222221 1245577899999999999999987
Q ss_pred EE
Q 018685 316 ML 317 (352)
Q Consensus 316 ~v 317 (352)
++
T Consensus 349 ~l 350 (473)
T PHA02542 349 TA 350 (473)
T ss_pred EE
Confidence 65
No 81
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=48.38 E-value=45 Score=37.53 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANS 333 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~ 333 (352)
.+.+.|..+.++|+|++|+|.... ....+|.+ ..+ +.++-++.+.|++.+--.||..+........
T Consensus 99 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGDDi----------~~v---~~~~~~~~~~pvi~v~tpGF~gs~~~G~~~a 165 (917)
T PRK14477 99 KLYRAILELAERYQPKAVFVYATCVTALTGDDV----------EAV---CKAAAEKVGIPVIPVNTPGFIGDKNIGNRLA 165 (917)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHhccCH----------HHH---HHHHHHhhCCcEEEEECCCccCchhhHHHHH
Confidence 344556667788999987775543 55555533 222 1222233588999999999975433333333
Q ss_pred HHHHh
Q 018685 334 VENLS 338 (352)
Q Consensus 334 v~~l~ 338 (352)
+.+++
T Consensus 166 ~~al~ 170 (917)
T PRK14477 166 GEALL 170 (917)
T ss_pred HHHHH
Confidence 33333
No 82
>PHA02546 47 endonuclease subunit; Provisional
Probab=48.06 E-value=1.1e+02 Score=29.94 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCC-cCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGML-KISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~-~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
+++...|++++.-+ ++.+||+||+. ||=+-.. ..+........+.+++...+.++|++++. |.-+
T Consensus 22 ~~~~~~l~~ii~~a-~~~~vD~Vlia-------GDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~-GNHD 87 (340)
T PHA02546 22 NYQLKFIKQAIEYS-KAHGITTWIQL-------GDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLV-GNHD 87 (340)
T ss_pred HHHHHHHHHHHHHH-HHcCCCEEEEC-------CcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEc-cCCC
Confidence 45777888876554 78899999873 3333221 23444433333334444455678877764 5544
No 83
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=47.96 E-value=64 Score=32.49 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCCCCCCCCCcC-----CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 260 LEVAGHTF-DPELVIYNAGTDILEGDPLGMLKI-----SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 260 l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~~l-----t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+..+..++ ++++|||- .|..+.. ..+...++.+.|.++|+++++||+++-
T Consensus 296 ~r~~~~~~~~~~lvvID---------yLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~ls 351 (421)
T TIGR03600 296 ARRIKRKKGGLDLIVVD---------YIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLLA 351 (421)
T ss_pred HHHHHHhcCCCCEEEEe---------cccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEec
Confidence 33344455 79999883 3332221 134567788899999999999998763
No 84
>PRK06321 replicative DNA helicase; Provisional
Probab=47.96 E-value=52 Score=34.05 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=35.3
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC---------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI---------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l---------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+..+.++++.++||| |.|+-+.- ....+.++++.|+.+|+++++||+++-
T Consensus 328 ~r~~~~~~~~~lvvI---------DyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vpVi~ls 386 (472)
T PRK06321 328 ARRMKESYDIQFLII---------DYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIPILCLS 386 (472)
T ss_pred HHHHHHhcCCCEEEE---------cchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 334445678899887 55554421 134577889999999999999998653
No 85
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=47.78 E-value=66 Score=32.64 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhc-CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC-CCCEEEEeCCCCCCChHHHHH
Q 018685 255 KLDEALEVAGHTF-DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR-NIPIVMLTSGGYMKSSARVIA 331 (352)
Q Consensus 255 ~~~~~l~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~-~~~~v~vleGGY~~~~~~~~~ 331 (352)
.+.+.+..+++++ +|++|+|.+.. -...+|.+ ..+ +.++-++. +.|++.+-..||..+......
T Consensus 83 ~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi----------~~v---~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~ 149 (427)
T PRK02842 83 ELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDL----------EGL---AERLSTEFAGVPVLNYSGSGLETTFTQGED 149 (427)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCChHHhhcCCH----------HHH---HHHhhcccCCCeEEEeeCCCccccHHHHHH
Confidence 4445555544555 89999887764 33444422 221 11222233 788999999999764445555
Q ss_pred HHHHHHhh
Q 018685 332 NSVENLSR 339 (352)
Q Consensus 332 ~~v~~l~~ 339 (352)
..++++++
T Consensus 150 ~~~~alv~ 157 (427)
T PRK02842 150 AVLAALVP 157 (427)
T ss_pred HHHHHHhh
Confidence 56666664
No 86
>PRK05748 replicative DNA helicase; Provisional
Probab=46.51 E-value=51 Score=33.59 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=34.2
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCCCCCCCCCcC-------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 260 LEVAGHTF-DPELVIYNAGTDILEGDPLGMLKI-------SPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 260 l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~~l-------t~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+..+.+++ ++++||| |.|+-+.. ....+.++.+.|..+|+++++|++++
T Consensus 305 ~r~~~~~~~~~~~vvI---------DyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~l 361 (448)
T PRK05748 305 CRRLAQEHGGLGLILI---------DYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIAL 361 (448)
T ss_pred HHHHHHhcCCCCEEEE---------ccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 33444566 7999887 45544421 12457788899999999999998875
No 87
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=46.49 E-value=21 Score=33.62 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=17.5
Q ss_pred HHHHHcCCCeEEEEeccCcCCchhhhh
Q 018685 183 YAFVQLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 183 ~l~~~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+++.+.| +||++||+|. +||=|+.+
T Consensus 23 ~~La~~G-~rVLliD~Dp-q~n~t~~l 47 (279)
T PRK13230 23 AALAESG-KKVLVVGCDP-KADCTRNL 47 (279)
T ss_pred HHHHhCC-CEEEEEeeCC-cccccccc
Confidence 3344455 6999999999 46666654
No 88
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=46.10 E-value=54 Score=29.58 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 290 KISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 290 ~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
.++++..+.+.+.+++++++++++.++.|+|
T Consensus 26 ~~~p~~~~e~a~~vld~a~~~gv~~iitLgG 56 (188)
T TIGR00162 26 SLSPEGQYELVNAIIDVAKKYGARMIYTLGG 56 (188)
T ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5667877789999999999999998888877
No 89
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=45.66 E-value=1.6e+02 Score=28.74 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=62.2
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEE-EEEcCCCCCCCCCCCCCcCC--HHHHH-HHHHHHHHHHhhCCCCE
Q 018685 239 QKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELV-IYNAGTDILEGDPLGMLKIS--PDGIA-ARDEKTFRFARSRNIPI 314 (352)
Q Consensus 239 ~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlI-vvsaG~D~~~~Dplg~~~lt--~~~y~-~~~~~l~~~a~~~~~~~ 314 (352)
-|+.+|. -+.|..+++ +....++|+-=+| ||- -|=..-.+. ..|-. .+.+.+.+++ .++.|+
T Consensus 126 rNFGm~~---PeGyRKAlR--lm~~AekF~lPiitfID--------T~GAypG~~AEErGQ~eAIA~nL~em~-~LkvPi 191 (317)
T COG0825 126 RNFGMPR---PEGYRKALR--LMKLAEKFGLPIITFID--------TPGAYPGIGAEERGQSEAIARNLREMA-RLKVPI 191 (317)
T ss_pred hcCCCCC---chHHHHHHH--HHHHHHHhCCCEEEEec--------CCCCCCCcchhhcccHHHHHHHHHHHh-CCCCCE
Confidence 3666653 458999986 4566689974444 441 111122222 23333 3555666664 467887
Q ss_pred E--EEeCCCCCCChHHHHHHHHHHHhhcCCCCCCCC
Q 018685 315 V--MLTSGGYMKSSARVIANSVENLSRKGLINMGRS 348 (352)
Q Consensus 315 v--~vleGGY~~~~~~~~~~~v~~l~~~~l~~~~~~ 348 (352)
| +++|||-..-.+-.++..|..|-..-++-.+||
T Consensus 192 I~iVIGEGgSGGALAi~vad~V~mle~s~ySVisPE 227 (317)
T COG0825 192 ISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPE 227 (317)
T ss_pred EEEEecCCCchhhHHhhHHHHHHHHHhceeeecChh
Confidence 5 578999988788899999999988888877776
No 90
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=45.58 E-value=27 Score=29.83 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=16.1
Q ss_pred HcCCCeEEEEeccCcCCchhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEK 208 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~ 208 (352)
+.| .||++||.|...||-+..
T Consensus 26 ~~g-~~vllvD~D~~~~~~~~~ 46 (179)
T cd02036 26 QLG-YKVVLIDADLGLRNLDLI 46 (179)
T ss_pred hCC-CeEEEEeCCCCCCCchhh
Confidence 334 699999999998876553
No 91
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=45.33 E-value=77 Score=32.62 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhc-CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHH-HHhh---CCCCEEEEeCCCCCCChHH
Q 018685 255 KLDEALEVAGHTF-DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFR-FARS---RNIPIVMLTSGGYMKSSAR 328 (352)
Q Consensus 255 ~~~~~l~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~-~a~~---~~~~~v~vleGGY~~~~~~ 328 (352)
.+.+.|..+.+.| +|++|+|..+. =...+|. ...+.+.+.+ +.++ .+.|++.+-.+||..+...
T Consensus 76 kL~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDD----------i~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~ 145 (457)
T TIGR02932 76 RIEEGVLTLARRYPNLRVIPIITTCSTETIGDD----------IEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVT 145 (457)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCchHHhhcCC----------HHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHH
Confidence 3445566667888 69988886653 3333332 2222222111 1112 3689999999999976666
Q ss_pred HHHHHHHHHhhc
Q 018685 329 VIANSVENLSRK 340 (352)
Q Consensus 329 ~~~~~v~~l~~~ 340 (352)
.....+.+++..
T Consensus 146 G~~~a~~ali~~ 157 (457)
T TIGR02932 146 GYAECVKSVIKT 157 (457)
T ss_pred HHHHHHHHHHHH
Confidence 667777777653
No 92
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=44.98 E-value=1.2e+02 Score=31.15 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhc-CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHH----HhhCCCCEEEEeCCCCCCChHH
Q 018685 255 KLDEALEVAGHTF-DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRF----ARSRNIPIVMLTSGGYMKSSAR 328 (352)
Q Consensus 255 ~~~~~l~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~----a~~~~~~~v~vleGGY~~~~~~ 328 (352)
.+++.|..+.+.| +|++|+|..+. =...+|.+ ..+.+.+.+- ..+.+.|++.+-.+||.-+...
T Consensus 73 ~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi----------~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~ 142 (454)
T cd01973 73 RVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDI----------EGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVT 142 (454)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchHhhhccCH----------HHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHH
Confidence 3445666777889 69988877664 33333322 2211111110 0112678889999999876566
Q ss_pred HHHHHHHHHhhc
Q 018685 329 VIANSVENLSRK 340 (352)
Q Consensus 329 ~~~~~v~~l~~~ 340 (352)
.....+.+++..
T Consensus 143 G~~~a~~ali~~ 154 (454)
T cd01973 143 GYDEAVRSVVKT 154 (454)
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 93
>PRK08006 replicative DNA helicase; Provisional
Probab=44.84 E-value=66 Score=33.31 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=33.1
Q ss_pred Hhhc-CCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 264 GHTF-DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 264 ~~~f-~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
..++ +.++||| |.|+-+.. ....+.++++.|+.+|+++++||+++-
T Consensus 331 ~~~~~~~~lvvI---------DYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 331 FREHGGLSLIMI---------DYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred HHhcCCCCEEEE---------ccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3445 5888887 55544332 234688899999999999999988764
No 94
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=44.76 E-value=36 Score=27.95 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCC
Q 018685 253 LKKLDEALEVAGHTFDPELVIYNAGTDI 280 (352)
Q Consensus 253 l~~~~~~l~p~~~~f~PdlIvvsaG~D~ 280 (352)
...+.+.|..++++++||+|+.-...|.
T Consensus 85 ~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 85 WEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3444455667779999999999888776
No 95
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=44.29 E-value=33 Score=31.78 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=15.2
Q ss_pred HcCCCeEEEEeccCcCCchhhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+.| +||++||+|. +||-|...
T Consensus 27 ~~G-~kVlliD~Dp-q~n~~~~~ 47 (270)
T cd02040 27 EMG-KKVMIVGCDP-KADSTRLL 47 (270)
T ss_pred hCC-CeEEEEEcCC-CCCchhhh
Confidence 345 6999999999 46666543
No 96
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=43.67 E-value=3e+02 Score=27.10 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEE-eCCCCCCCh-------HHHHHHHHHHHh
Q 018685 291 ISPDGIAARDEKTFRFARSRNIPIVML-TSGGYMKSS-------ARVIANSVENLS 338 (352)
Q Consensus 291 lt~~~y~~~~~~l~~~a~~~~~~~v~v-leGGY~~~~-------~~~~~~~v~~l~ 338 (352)
+++++|.+..+ ++++|.++++|+|.+ =..|+.+.. ++.++.++.++.
T Consensus 132 ~~peg~rKa~R-~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a 186 (319)
T PRK05724 132 PRPEGYRKALR-LMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMA 186 (319)
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHh
Confidence 66899999876 779999999998865 445555432 344555555444
No 97
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=43.49 E-value=59 Score=31.44 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDP 285 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dp 285 (352)
+.|..++++++||++|+ .|-|+...+.
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~ 170 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNK 170 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCC
Confidence 34667789999998876 8999987775
No 98
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=43.40 E-value=86 Score=30.92 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHHH
Q 018685 256 LDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSV 334 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~v 334 (352)
+.+.+..+.++++|++|+|..+. ....+|. +..+.+ ++-+..+.|++.+-..||..+.........
T Consensus 68 l~~~i~~~~~~~~p~~i~v~~tc~~~liGdD----------i~~v~~---~~~~~~~~~vv~~~~~gf~~~~~~G~~~a~ 134 (399)
T cd00316 68 LLEAIINELKRYKPKVIFVYTTCTTELIGDD----------IEAVAK---EASKEIGIPVVPASTPGFRGSQSAGYDAAV 134 (399)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhhccC----------HHHHHH---HHHHhhCCceEEeeCCCCcccHHHHHHHHH
Confidence 33444455678899988776654 4444442 232222 222345899999999999955455555555
Q ss_pred HHHhhc
Q 018685 335 ENLSRK 340 (352)
Q Consensus 335 ~~l~~~ 340 (352)
.++...
T Consensus 135 ~~~~~~ 140 (399)
T cd00316 135 KAIIDH 140 (399)
T ss_pred HHHHHH
Confidence 555543
No 99
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.28 E-value=89 Score=28.06 Aligned_cols=37 Identities=14% Similarity=0.372 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 269 PELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 269 PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
-|+||+ |..|.|.+....|.+..+.++ .++-|+++++
T Consensus 101 aDvIII---------DEIGpMElks~~f~~~ve~vl----~~~kpliatl 137 (179)
T COG1618 101 ADVIII---------DEIGPMELKSKKFREAVEEVL----KSGKPLIATL 137 (179)
T ss_pred CCEEEE---------ecccchhhccHHHHHHHHHHh----cCCCcEEEEE
Confidence 589987 899999999999998665553 3456666655
No 100
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.17 E-value=1.4e+02 Score=27.87 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
+....|++++.-+ .+.+||+||++ ||=+-...-+.+....+.+.+.++.....+|++++.|
T Consensus 23 ~~~~~l~~l~~~~-~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~G 83 (253)
T TIGR00619 23 EQKAFLDDLLEFA-KAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISG 83 (253)
T ss_pred HHHHHHHHHHHHH-HHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 4556777766544 67799998873 3333333333333333334444443322267766544
No 101
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.70 E-value=86 Score=31.80 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCC-CEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 255 KLDEALEVAGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 255 ~~~~~l~p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
.+.+.|..+.++|+| ++|+|.... ....+|.+ ..+ +.++.++.+.|++.+--.||..
T Consensus 85 kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi----------~~v---~~~~~~~~~~pvi~v~t~gf~g 143 (421)
T cd01976 85 KLAKAIDEAYELFPLNKGISVQSECPVGLIGDDI----------EAV---ARKASKELGIPVVPVRCEGFRG 143 (421)
T ss_pred HHHHHHHHHHHhCCCccEEEEECCChHHHhccCH----------HHH---HHHHHHhhCCCEEEEeCCCccC
Confidence 556777778899999 988776553 44444422 222 2222234588999999999965
No 102
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=42.54 E-value=1.6e+02 Score=25.65 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEE-------cCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYN-------AGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvs-------aG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
+.+.++.+.+.+..+-+.-...+||+. +|.|...--......-....|....+.+......+..|+|++..|
T Consensus 24 ~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 24 SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 557777777777766554555677774 444433211000000012344444444555555678899988764
No 103
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=42.13 E-value=47 Score=30.88 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=35.6
Q ss_pred HHHHHHHHHhh-cCCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 256 LDEALEVAGHT-FDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 256 ~~~~l~p~~~~-f~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
++..+..+..+ .+.++|||- .+..+.. ..+.+..+.+.|.++|+++++||+++-
T Consensus 117 i~~~i~~~~~~~~~~~~v~ID---------yl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~s 177 (259)
T PF03796_consen 117 IESKIRRLKREGKKVDVVFID---------YLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALS 177 (259)
T ss_dssp HHHHHHHHHHHSTTEEEEEEE---------EGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHhhccCCCEEEec---------hHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEcc
Confidence 33444444455 677888873 2222222 356677888899999999999988753
No 104
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=41.80 E-value=5.2 Score=38.16 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=28.0
Q ss_pred HHHHHhhcCCCEEEEEcCC---CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 260 LEVAGHTFDPELVIYNAGT---DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~---D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+..++++++||+||..||+ |..+.+|...+.+. ...++.|.+.|.+.+.|++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN----~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAIN----VDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHH----THHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHh----hHHHHHHHHHHHHcCCcEEEe
Confidence 3445577899999999986 34444443222221 144566778888889988653
No 105
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=41.15 E-value=76 Score=32.69 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhc-CCCEE-EEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-----hhCCCCEEEEeCCCCCCChHH
Q 018685 256 LDEALEVAGHTF-DPELV-IYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFA-----RSRNIPIVMLTSGGYMKSSAR 328 (352)
Q Consensus 256 ~~~~l~p~~~~f-~PdlI-vvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a-----~~~~~~~v~vleGGY~~~~~~ 328 (352)
+++.|..+.+.| +|++| |++.+.....+|.+. .+.+.+.+-. ...+.|++.+-.+||..+...
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~----------~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~ 149 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVD----------GLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMIT 149 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHH----------HHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHH
Confidence 566777777889 59987 555555666666432 2222211100 012568999999999876666
Q ss_pred HHHHHHHHHhhc
Q 018685 329 VIANSVENLSRK 340 (352)
Q Consensus 329 ~~~~~v~~l~~~ 340 (352)
.....+.+++..
T Consensus 150 Gy~~a~~ali~~ 161 (461)
T TIGR02931 150 GYDVAVHDFVKH 161 (461)
T ss_pred HHHHHHHHHHHH
Confidence 667777777754
No 106
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=40.12 E-value=90 Score=32.19 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCC-CEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 255 KLDEALEVAGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 255 ~~~~~l~p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
.|.+.|..+.+.|+| ++|+|.+.. ....+|.+ ..+ +.++.++.+.||+.+--.||..
T Consensus 118 kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi----------~av---~~~~~~~~~~pVi~v~t~gf~G 176 (466)
T TIGR01282 118 KLKKAIDEIEELFPLNKGISIQSECPVGLIGDDI----------EAV---AKKASKELGKPVVPVRCEGFRG 176 (466)
T ss_pred HHHHHHHHHHHhCCcccEEEEeCCChHHHhccCH----------HHH---HHHHhhhcCCcEEEEeCCCcCC
Confidence 556777778899999 988876654 44445432 222 2222234589999999999974
No 107
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=39.71 E-value=35 Score=31.89 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=15.2
Q ss_pred HcCCCeEEEEeccCcCCchhhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+.| +||++||.|- +||=|+.+
T Consensus 28 ~~G-~kVLliD~Dp-q~~~t~~l 48 (270)
T PRK13185 28 KLG-KKVLQIGCDP-KHDSTFTL 48 (270)
T ss_pred HCC-CeEEEEeccC-Ccchhhhh
Confidence 345 6999999997 56666543
No 108
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.59 E-value=54 Score=26.31 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=26.6
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
..+++++||+|.+|+-+. -+.... ..+.+.+++.+..+.++.+|.+-
T Consensus 45 ~~~~~~~pd~V~iS~~~~-----------~~~~~~----~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 45 EALRAERPDVVGISVSMT-----------PNLPEA----KRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HHHHHTTCSEEEEEESSS-----------THHHHH----HHHHHHHHTTCTTSEEEEEESSS
T ss_pred HHHhcCCCcEEEEEccCc-----------CcHHHH----HHHHHHHHhcCCCCEEEEECCch
Confidence 345788999999987511 112222 23444455554445666666653
No 109
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=39.41 E-value=34 Score=30.84 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=15.4
Q ss_pred HcCCCeEEEEeccCcCCchhhhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKDF 210 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~if 210 (352)
+.| +||++||.|.. ||-|..++
T Consensus 26 ~~G-~rvLliD~D~q-~~~~~~~~ 47 (212)
T cd02117 26 EMG-KKVLQVGCDPK-ADSTRLLL 47 (212)
T ss_pred HCC-CcEEEEeCCCC-CCcccccc
Confidence 345 69999999965 66665443
No 110
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=39.20 E-value=1e+02 Score=28.23 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=32.2
Q ss_pred hcCCCEEEEEcCCCCCCCCCCCCC----cCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 266 TFDPELVIYNAGTDILEGDPLGML----KISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 266 ~f~PdlIvvsaG~D~~~~Dplg~~----~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
..+|++||+ ||+..+ .........+.+.+.+++++.+.-++++.-
T Consensus 109 ~~~~~lvvi---------Dpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H 157 (239)
T cd01125 109 IRRIDLVVI---------DPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHH 157 (239)
T ss_pred hcCCCEEEE---------CChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 569999997 566543 345666677777788888887877777654
No 111
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=39.14 E-value=34 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=15.1
Q ss_pred HcCCCeEEEEeccCcCCchhhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+.| +||++||+|. +||-|+.+
T Consensus 26 ~~g-~rVLliD~D~-q~~~~~~l 46 (268)
T TIGR01281 26 KLG-KRVLQIGCDP-KHDSTFTL 46 (268)
T ss_pred hCC-CeEEEEecCc-ccccccee
Confidence 345 6999999997 56766533
No 112
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=38.99 E-value=37 Score=31.07 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.2
Q ss_pred CeEEEEeccCcCCc
Q 018685 191 SRVMIIDLDAHQGN 204 (352)
Q Consensus 191 ~rV~IiD~DvHHGn 204 (352)
+||++||.|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 69999999998766
No 113
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=38.94 E-value=11 Score=28.07 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=7.1
Q ss_pred CcccccchH
Q 018685 169 GGFCAYADI 177 (352)
Q Consensus 169 ~GFC~fNnv 177 (352)
-=||||||-
T Consensus 16 TKFcYyNNy 24 (63)
T PF02701_consen 16 TKFCYYNNY 24 (63)
T ss_pred CEEEeecCC
Confidence 359999993
No 114
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=38.91 E-value=1.7e+02 Score=28.94 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEe-CCCCCC
Q 018685 291 ISPDGIAARDEKTFRFARSRNIPIVMLT-SGGYMK 324 (352)
Q Consensus 291 lt~~~y~~~~~~l~~~a~~~~~~~v~vl-eGGY~~ 324 (352)
+++++|.+..+ ++++|.++++|+|.+. .+|..+
T Consensus 135 ~~p~g~rKa~R-lm~lA~~f~lPIItlvDTpGA~~ 168 (322)
T CHL00198 135 PSPGGYRKALR-LMKHANKFGLPILTFIDTPGAWA 168 (322)
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCEEEEEeCCCcCc
Confidence 78999999886 7799999999988764 334443
No 115
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=38.87 E-value=66 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 268 DPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 268 ~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
.+|+||+.- |--+ .|++|-++++..+++++++.+.+.+..| |||..
T Consensus 83 ~~Dliil~G-------d~Q~---~~~~gqyel~~~~Ld~a~e~g~~~IyTL-GGy~v 128 (258)
T COG2047 83 ERDLIILVG-------DTQA---TSSEGQYELTGKILDIAKEFGARMIYTL-GGYGV 128 (258)
T ss_pred CCcEEEEec-------cccc---cCcchhHHHHHHHHHHHHHcCCcEEEEe-cCccc
Confidence 568888732 2222 4566777788889999999999999888 56764
No 116
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=38.45 E-value=1.4e+02 Score=28.08 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC-CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI-SPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l-t~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
..+...+++++|++||| |++..+.. ....+.+....++.++++.+..++++-+
T Consensus 121 ~~l~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e 174 (259)
T TIGR03878 121 ATLAYAIKEYKVKNTVI---------DSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQ 174 (259)
T ss_pred HHHHHHHHhhCCCEEEE---------cCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 33445568899999987 66654322 2344556666678888888888888765
No 117
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=38.13 E-value=94 Score=25.47 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
+.+..+.+.++||+|.+|+ +..+.... ..+.+.+++.+..+.++++|.+-.
T Consensus 29 ~~~~~~~~~~~pdiv~~S~------------~~~~~~~~----~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 29 DIVEDIKELLKPDVVGISL------------MTSAIYEA----LELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred HHHHHHHHhcCCCEEEEee------------ccccHHHH----HHHHHHHHHHCCCCEEEECCcchh
Confidence 3444443448999999973 11122223 334455555544466667666643
No 118
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=37.87 E-value=59 Score=28.30 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHHhh-cCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 262 VAGHT-FDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 262 p~~~~-f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
..+++ ++|++|||-.=.+.+..|. =+...+.++.+.+.++|++++..++++.
T Consensus 134 ~~~~~~~~~~lvviD~l~~~~~~~~-----~~~~~~~~~~~~l~~la~~~~~~vi~v~ 186 (193)
T PF13481_consen 134 AALKELYGPDLVVIDPLQSLHDGDE-----NSNSAVAQLMQELKRLAKEYGVAVILVH 186 (193)
T ss_dssp HHHTT----SEEEEE-GGGG--S-T-----T-HHHHHHHHHHHHHHHHHH--EEEEEE
T ss_pred HHHhhcCCCcEEEEcCHHHHhcCCC-----CCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 33455 8999999842222222210 1133446777888899988887776653
No 119
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=36.96 E-value=92 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhc
Q 018685 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 177 vAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~ 211 (352)
.+.++.++.+..+.+||+||+-|-=.|.|..+.|.
T Consensus 135 ~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~ 169 (366)
T COG0683 135 AAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFK 169 (366)
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHH
Confidence 45577888888776799999999999999999885
No 120
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=36.78 E-value=25 Score=30.55 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.0
Q ss_pred CeEEEEeccCcCCch
Q 018685 191 SRVMIIDLDAHQGNG 205 (352)
Q Consensus 191 ~rV~IiD~DvHHGnG 205 (352)
+||++||.|.+.+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 599999999998664
No 121
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=36.68 E-value=1.4e+02 Score=30.76 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhc-CCCEEE-EEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC-CCCEEEEeCCCCCC
Q 018685 256 LDEALEVAGHTF-DPELVI-YNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSR-NIPIVMLTSGGYMK 324 (352)
Q Consensus 256 ~~~~l~p~~~~f-~PdlIv-vsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~-~~~~v~vleGGY~~ 324 (352)
+.+.|..+.++| +|++|+ ++.......+|.+. .+ +.++-++. +.|++.+--.||..
T Consensus 114 L~~aI~~~~~~~~~p~~I~V~tTC~~elIGDDi~----------~v---~~~~~~~~~~~~vi~v~tpgf~g 172 (461)
T TIGR01860 114 LEKSIHEAFDEFPDIKRMIVYTTCPTALIGDDIK----------AV---AKKVQKELPDVDIFTVECPGFAG 172 (461)
T ss_pred HHHHHHHHHHhCCCCCEEEEEccCchhhhcCCHH----------HH---HHHHHHhcCCCcEEEEeCCCcCC
Confidence 444455566778 588544 44455666666332 21 22222334 67999999999985
No 122
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=36.61 E-value=40 Score=32.36 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=16.2
Q ss_pred HHcCCCeEEEEeccCcCCchhhhhh
Q 018685 186 VQLNISRVMIIDLDAHQGNGHEKDF 210 (352)
Q Consensus 186 ~~~~~~rV~IiD~DvHHGnGTq~if 210 (352)
.+.| +||++||+|.+..+ |+-+|
T Consensus 29 a~~g-~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 29 VEMG-QKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HHCC-CeEEEEeccccccc-ccccc
Confidence 3445 69999999998655 55444
No 123
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.32 E-value=1.6e+02 Score=23.39 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCCCCCCCcccCCcccccccCCCCCChHHHHHHH
Q 018685 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKL 256 (352)
Q Consensus 177 vAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl~~~ 256 (352)
+.+.+.++++ .|. .|-++|.+++..+-.+.+-..++++..+|.+... .+ ...
T Consensus 17 l~~la~~l~~-~G~-~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~-------------------------~~-~~~ 68 (121)
T PF02310_consen 17 LLYLAAYLRK-AGH-EVDILDANVPPEELVEALRAERPDVVGISVSMTP-------------------------NL-PEA 68 (121)
T ss_dssp HHHHHHHHHH-TTB-EEEEEESSB-HHHHHHHHHHTTCSEEEEEESSST-------------------------HH-HHH
T ss_pred HHHHHHHHHH-CCC-eEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcC-------------------------cH-HHH
Confidence 3445555555 464 8889999999988888888889999999975210 11 111
Q ss_pred HHHHHHHHhhcCCCEEEEEcC
Q 018685 257 DEALEVAGHTFDPELVIYNAG 277 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG 277 (352)
.+++.. +++..|+.+++.-|
T Consensus 69 ~~l~~~-~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 69 KRLARA-IKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHH-HHTTCTTSEEEEEE
T ss_pred HHHHHH-HHhcCCCCEEEEEC
Confidence 233333 58889999888777
No 124
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=36.23 E-value=42 Score=32.36 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=12.7
Q ss_pred HcCCCeEEEEeccCcCC
Q 018685 187 QLNISRVMIIDLDAHQG 203 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHG 203 (352)
+.| +||++||+|...+
T Consensus 26 ~~g-~rVLlID~Dpq~~ 41 (296)
T TIGR02016 26 EMG-KRVLQLGCDPKHD 41 (296)
T ss_pred HCC-CeEEEEEecCCCC
Confidence 344 6999999999864
No 125
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=35.91 E-value=2e+02 Score=26.70 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=36.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+.=+.+.+..+.+++..+.+.-....||+ ++|.|...-..... .-....+....+.+++....+..|+|+..
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~kpvIAav 101 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELAQLGQVTFERVEKFSKPVIAAI 101 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34477888888888876643333334544 55666432110000 00111222222334443455678998776
Q ss_pred CC
Q 018685 319 SG 320 (352)
Q Consensus 319 eG 320 (352)
.|
T Consensus 102 ~G 103 (257)
T PRK07658 102 HG 103 (257)
T ss_pred cC
Confidence 65
No 126
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=35.68 E-value=1.5e+02 Score=30.97 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANS 333 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~ 333 (352)
.+.+.|..+.++|+|++|+|..+ .-...+|.+. . +.+-+ +.+.|++.+--.||...........
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~sTC~seiIGdDi~----------~----v~~~~-~~~~~Vi~v~t~gf~~~~~~G~~~a 136 (519)
T PRK02910 72 LLKDTLRRADERFQPDLIVVGPSCTAELLQEDLG----------G----LAKHA-GLPIPVLPLELNAYRVKENWAADET 136 (519)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHH----------H----HHHHh-CCCCCEEEEecCCcccccchHHHHH
Confidence 56667777778899998666544 3444444332 1 11111 2478999999999987654455555
Q ss_pred HHHHhhc
Q 018685 334 VENLSRK 340 (352)
Q Consensus 334 v~~l~~~ 340 (352)
+.+++..
T Consensus 137 l~~lv~~ 143 (519)
T PRK02910 137 FYQLVRA 143 (519)
T ss_pred HHHHHHH
Confidence 5555543
No 127
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=35.50 E-value=67 Score=28.92 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=33.7
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEEeCCCCC
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLTSGGYM 323 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~vleGGY~ 323 (352)
+...+.+.++|++++.+|.- .+++.|.++...+.+..++. ..||+++--=+|.
T Consensus 51 ~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~ 105 (178)
T PF14606_consen 51 VADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYP 105 (178)
T ss_dssp HHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----T
T ss_pred HHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcc
Confidence 33445666889999999976 67778888777777766663 6899988744443
No 128
>PRK05279 N-acetylglutamate synthase; Validated
Probab=35.22 E-value=1.2e+02 Score=30.79 Aligned_cols=64 Identities=8% Similarity=0.080 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
..+|.+.|++.+. -+.+|+=+.+||-.|-.+..++ .+..+.+.+..+ .+.|.++|+|.+||+..
T Consensus 6 ~~~~~~~~~~~~~-~i~~~~~~~~VIk~GG~~l~~~----------~~~~~~~~i~~l-~~~g~~~VlVHGgg~~i 69 (441)
T PRK05279 6 STEFVDWFRHSAP-YINAHRGKTFVIMLGGEAIAHG----------NFSNIVHDIALL-HSLGIRLVLVHGARPQI 69 (441)
T ss_pred hhHHHHHHHHHhH-HHHHhCCCEEEEEECchhccCh----------hHHHHHHHHHHH-HHCCCeEEEECCCCHHH
Confidence 3468888988864 4588988899999987776433 133333344443 33578999999999853
No 129
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.13 E-value=1.7e+02 Score=30.03 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=37.2
Q ss_pred HhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 264 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+++-+|+++||-.=-= .+.+-+..--=|....++.+..++++|+..+++++.++
T Consensus 164 l~~~~p~lvVIDSIQT-~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 164 LEQEKPDLVVIDSIQT-LYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred HHhcCCCEEEEeccce-eecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3667999999854222 22333443334566788899999999999988877664
No 130
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=35.08 E-value=2.2e+02 Score=29.84 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC----CCCEEEEeCCCCCCChHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR----NIPIVMLTSGGYMKSSARV 329 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~----~~~~v~vleGGY~~~~~~~ 329 (352)
-+.+.|..+.+.|+|++|+|.... =...+|.+ ..+.+ +.-++. +.||+.+--.||..+....
T Consensus 129 ~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi----------~a~i~---~~~~~~~~p~~~pVi~v~TpgF~Gs~~~G 195 (515)
T TIGR01286 129 NMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDL----------NAFIG---NAKKEGFIPDDFPVPFAHTPSFVGSHITG 195 (515)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccH----------HHHHH---HHHHhcCCCCCCceEEeeCCCCcccHHHH
Confidence 445556667788999999987764 22223322 21111 111221 4589999999998766666
Q ss_pred HHHHHHHHhhc
Q 018685 330 IANSVENLSRK 340 (352)
Q Consensus 330 ~~~~v~~l~~~ 340 (352)
+...+.+++..
T Consensus 196 yd~a~~ail~~ 206 (515)
T TIGR01286 196 YDNMFKGILEY 206 (515)
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 131
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=34.84 E-value=4.1e+02 Score=27.34 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCEEEEe-CCCCCCCh-------HHHHHHHHHHHhh
Q 018685 290 KISPDGIAARDEKTFRFARSRNIPIVMLT-SGGYMKSS-------ARVIANSVENLSR 339 (352)
Q Consensus 290 ~lt~~~y~~~~~~l~~~a~~~~~~~v~vl-eGGY~~~~-------~~~~~~~v~~l~~ 339 (352)
.+++++|.+..+ ++++|.++++|||.+. ..|+.+.. ++.++.++.++..
T Consensus 201 ~~~peGyRKAlR-~mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~ 257 (431)
T PLN03230 201 MPQPNGYRKALR-FMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFG 257 (431)
T ss_pred CCCHHHHHHHHH-HHHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhc
Confidence 578999999887 7799999999988654 44554432 2345555555443
No 132
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=34.64 E-value=2e+02 Score=24.73 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=11.7
Q ss_pred HHHHHHhhcCCCEEEE
Q 018685 259 ALEVAGHTFDPELVIY 274 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvv 274 (352)
.+..++++++||+||+
T Consensus 29 ~~~~~i~~~~pd~vv~ 44 (156)
T cd08165 29 SFQTSLWLLQPDVVFV 44 (156)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 3445567889998886
No 133
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=34.37 E-value=85 Score=25.04 Aligned_cols=14 Identities=43% Similarity=0.862 Sum_probs=13.1
Q ss_pred CeEEEEeccCcCCc
Q 018685 191 SRVMIIDLDAHQGN 204 (352)
Q Consensus 191 ~rV~IiD~DvHHGn 204 (352)
++|+++|.|.++++
T Consensus 30 ~~~~l~d~d~~~~~ 43 (106)
T cd03111 30 RRVLLVDLDLQFGD 43 (106)
T ss_pred CcEEEEECCCCCCC
Confidence 69999999999987
No 134
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=33.74 E-value=45 Score=30.33 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=12.4
Q ss_pred HHcCCCeEEEEeccCcCCc
Q 018685 186 VQLNISRVMIIDLDAHQGN 204 (352)
Q Consensus 186 ~~~~~~rV~IiD~DvHHGn 204 (352)
.+.| +||++||+|.. |+
T Consensus 27 a~~g-~~VlliD~D~q-~~ 43 (246)
T TIGR03371 27 KLLG-EPVLAIDLDPQ-NL 43 (246)
T ss_pred HhCC-CcEEEEeCCCc-ch
Confidence 3345 69999999983 44
No 135
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=33.32 E-value=51 Score=31.27 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
++++...+++|+||++|+.+ |-+. .-|=. ...++....++|++++.-|
T Consensus 48 e~~~~~~~~~~~pdf~I~is--------PN~~----~PGP~----~ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 48 EEVVTKMLKEWDPDFVIVIS--------PNAA----APGPT----KAREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHHHH--SEEEEE---------S-TT----SHHHH----HHHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHHHhhCCCEEEEEC--------CCCC----CCCcH----HHHHHHHhCCCCEEEEcCC
Confidence 45566677899999999853 2221 11211 1233445678999988753
No 136
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=33.11 E-value=3.1e+02 Score=25.38 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
..=+.+.+..+.+.+..+.+. ....||+ |+|.|.... .....+......+++....+..|+|+..
T Consensus 22 Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~-------~~~~~~~~~~~~~~~~l~~~~kP~Iaav 93 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGD-------VYADDFPDALIEMLHAIDAAPVPVIAAI 93 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccc-------hhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344667777777777765332 4445554 566665421 1122332222233333345678999877
Q ss_pred CC
Q 018685 319 SG 320 (352)
Q Consensus 319 eG 320 (352)
.|
T Consensus 94 ~G 95 (243)
T PRK07854 94 NG 95 (243)
T ss_pred cC
Confidence 64
No 137
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=33.04 E-value=1.4e+02 Score=29.79 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
+..+++.-+||+||+. ||-+-+ -+..++..---+...=+.++++|.++++|-
T Consensus 92 ~~rvL~sE~PDlVVfT-------GD~i~g--~~t~Da~~sl~kAvaP~I~~~IPwA~~lGN 143 (379)
T KOG1432|consen 92 VSRVLASEKPDLVVFT-------GDNIFG--HSTQDAATSLMKAVAPAIDRKIPWAAVLGN 143 (379)
T ss_pred HHHHHhccCCCEEEEe-------CCcccc--cccHhHHHHHHHHhhhHhhcCCCeEEEecc
Confidence 4455677899999973 454433 556677654333334446679999999963
No 138
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=32.66 E-value=2.3e+02 Score=26.46 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE
Q 018685 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY 274 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~~~~f~PdlIvv 274 (352)
+.=+.+.+..+.+++..+.++-...+||+
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl 53 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVL 53 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 34467788888888876644333334554
No 139
>PRK06749 replicative DNA helicase; Provisional
Probab=32.45 E-value=1.2e+02 Score=30.84 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 293 PDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 293 ~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
.+.+.++++.++.+|+++++||+++
T Consensus 322 ~~ei~~isr~LK~lAkel~vpVi~l 346 (428)
T PRK06749 322 FQEISEISRKLKLLARELNVCVVAL 346 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4568889999999999999999876
No 140
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=32.28 E-value=48 Score=31.06 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=13.8
Q ss_pred CeEEEEeccCcCCchhhhhh
Q 018685 191 SRVMIIDLDAHQGNGHEKDF 210 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~if 210 (352)
+||++||+|.+..+ |...+
T Consensus 32 ~rvLliD~Dpq~~~-t~~~~ 50 (275)
T PRK13233 32 KKVFIHGCDPKADS-TRLIL 50 (275)
T ss_pred CeEEEeccCcCcCh-HHHHh
Confidence 69999999998644 44333
No 141
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.17 E-value=78 Score=28.74 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCC
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGML 289 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~ 289 (352)
.++-++.+..++. ++++|.|+-++|.+|+ |+|+---..-|
T Consensus 94 ~~eA~e~m~~vvr-AVkd~d~~k~VVAaGYaDa~Rvgsv~Pl 134 (235)
T COG1891 94 EEEALEVMKNVVR-AVKDFDPSKKVVAAGYADAHRVGSVSPL 134 (235)
T ss_pred HHHHHHHHHHHHH-HHhccCCCceEEeccccchhhccCcCcc
Confidence 4555666766665 4599999999999998 88876544433
No 142
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=31.89 E-value=95 Score=31.95 Aligned_cols=70 Identities=26% Similarity=0.333 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHH--hhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChH
Q 018685 250 NEYLKKLDEALEVAG--HTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSA 327 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~--~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~ 327 (352)
.++..++..++..+- +.|+-|+||++=|-|=+. |+ | ...+.++.++.+.++.+|+=|||+....
T Consensus 347 TD~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~-~~----------~---~~~v~e~~k~~~~rl~aV~I~~~~~~~l 412 (437)
T COG2425 347 TDITKALRSALEDLKSRELFKADIVVITDGEDERL-DD----------F---LRKVKELKKRRNARLHAVLIGGYGKPGL 412 (437)
T ss_pred CChHHHHHHHHHHhhcccccCCCEEEEeccHhhhh-hH----------H---HHHHHHHHHHhhceEEEEEecCCCCccc
Confidence 578888888887664 468999999988876444 32 2 2346667777889999999999997665
Q ss_pred HHHHHH
Q 018685 328 RVIANS 333 (352)
Q Consensus 328 ~~~~~~ 333 (352)
+.++..
T Consensus 413 ~~Isd~ 418 (437)
T COG2425 413 MRISDH 418 (437)
T ss_pred ceeeee
Confidence 555544
No 143
>PRK07773 replicative DNA helicase; Validated
Probab=31.60 E-value=1.5e+02 Score=33.30 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=35.0
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+..+.++.++++||| |.|+-|.- ......++.+.|..+|+++++|++++
T Consensus 319 ~r~~~~~~~~~lvvI---------DyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~l 373 (886)
T PRK07773 319 ARRLRQEANLGLIVV---------DYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVAL 373 (886)
T ss_pred HHHHHHhcCCCEEEE---------cchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEe
Confidence 344445678999887 55544431 12457888999999999999998875
No 144
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=31.49 E-value=47 Score=31.42 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
+++...+++|+||++|+-+ |-+..-= +.. -.++.++.++|++++.-|
T Consensus 50 ~~~~~~~~~~~pDf~i~is--------PN~a~PG-P~~-------ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVIS--------PNPAAPG-PKK-------AREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHHhhCCCEEEEEC--------CCCCCCC-chH-------HHHHHHhcCCCEEEEcCC
Confidence 4556667899999998843 2221110 111 223345668899888654
No 145
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=31.44 E-value=2e+02 Score=27.70 Aligned_cols=92 Identities=20% Similarity=0.102 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHHHHHH--HhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEEeCCC
Q 018685 246 GTTTNEYLKKLDEALEVA--GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLTSGG 321 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~--~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~vleGG 321 (352)
+++.++|..+++..+.-+ ++.--|==.....|.=...-+-|.....+++.-.++.+.-+++|+++ .++.+.++|=|
T Consensus 50 ~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvG 129 (285)
T COG1831 50 PTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVG 129 (285)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccC
Confidence 456789999998876532 23333322455677766666666655566766666666777888774 67999999999
Q ss_pred CCC--ChHHHHHHHHHHH
Q 018685 322 YMK--SSARVIANSVENL 337 (352)
Q Consensus 322 Y~~--~~~~~~~~~v~~l 337 (352)
+-- -+..+|+.|-..+
T Consensus 130 rPHypVs~~v~~~~n~vl 147 (285)
T COG1831 130 RPHYPVSEEVWEASNEVL 147 (285)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 863 3355555554433
No 146
>PRK08840 replicative DNA helicase; Provisional
Probab=31.16 E-value=1.3e+02 Score=31.09 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=32.1
Q ss_pred hhc-CCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 265 HTF-DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 265 ~~f-~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.++ +.++||| |.|+-+.. ....+.++++.|+.+|+++++||+++=
T Consensus 325 ~~~~~~~lvvI---------DYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 376 (464)
T PRK08840 325 REHGGLSMIMV---------DYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALS 376 (464)
T ss_pred HhcCCCCEEEE---------ccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 444 4788887 45554432 134578899999999999999988763
No 147
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=31.15 E-value=50 Score=30.77 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=13.5
Q ss_pred HcCCCeEEEEeccCcCCchhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq 207 (352)
+.| +||++||.|. +||=++
T Consensus 26 ~~G-~rvlliD~Dp-q~~~~~ 44 (267)
T cd02032 26 KRG-KKVLQIGCDP-KHDSTF 44 (267)
T ss_pred HCC-CcEEEEecCC-CCCcce
Confidence 445 6999999996 455444
No 148
>PRK10037 cell division protein; Provisional
Probab=31.12 E-value=49 Score=30.66 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=14.4
Q ss_pred HHHcCCCeEEEEeccCcCCchhh
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq 207 (352)
+.+.| +||++||+|-+ ||-+.
T Consensus 26 La~~G-~rVLlID~D~q-~~~s~ 46 (250)
T PRK10037 26 LQMLG-ENVLVIDACPD-NLLRL 46 (250)
T ss_pred HHhcC-CcEEEEeCChh-hhHHH
Confidence 33445 69999999994 55443
No 149
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.00 E-value=4e+02 Score=24.56 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCH---HHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 261 EVAGHTFDPELVIYNAGTDILEGDPLGMLKISP---DGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 261 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~---~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
...+++++-.++-+..+...+ |...+.-++ +...+..+..+++|+.+|.+.+.+..|
T Consensus 53 ~~~~~~~gl~v~s~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 53 KALAQTYQMPIIGYTPETNGY---PYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHcCCeEEEecCcccCc---CccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 344566777765555443322 222111122 233445566778999999999877654
No 150
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=29.96 E-value=59 Score=30.51 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=16.2
Q ss_pred HHHHHcCCCeEEEEeccCcCCchhhhh
Q 018685 183 YAFVQLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 183 ~l~~~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+++.+.| +||++||+|....+ |+.+
T Consensus 23 ~~La~~G-~rVLlID~Dpq~~~-t~~l 47 (274)
T PRK13235 23 AGLAEMG-KKVMVVGCDPKADS-TRLL 47 (274)
T ss_pred HHHHHCC-CcEEEEecCCcccc-cccc
Confidence 3344445 69999999986543 4443
No 151
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=29.93 E-value=3.3e+02 Score=22.80 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEE
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~ 316 (352)
.+.++|...+++++..+ ++.++.+|++..-.-. .....-.....+.+.++|++.+.+++-
T Consensus 81 ~~~~~~~~~l~~li~~~-~~~~~~vil~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~~~d 140 (177)
T cd01822 81 IPPDQTRANLRQMIETA-QARGAPVLLVGMQAPP---------NYGPRYTRRFAAIYPELAEEYGVPLVP 140 (177)
T ss_pred CCHHHHHHHHHHHHHHH-HHCCCeEEEEecCCCC---------ccchHHHHHHHHHHHHHHHHcCCcEec
Confidence 34678999999988876 4448888887642111 111222445566777888888877664
No 152
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=29.44 E-value=2.3e+02 Score=24.73 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHHhhC-----CCCEEEEeCCCCC
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGM-LKISPDGIAARDEKTFRFARSR-----NIPIVMLTSGGYM 323 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~-~~lt~~~y~~~~~~l~~~a~~~-----~~~~v~vleGGY~ 323 (352)
.+..++++++||+||+. ||=+-. ...+.+.+.+..+.+.++.... +.|+ .+..|--+
T Consensus 36 ~~~~~i~~~~pd~vi~l-------GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~GNHD 98 (171)
T cd07384 36 AFKTALQRLKPDVVLFL-------GDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPV-YYVPGNHD 98 (171)
T ss_pred HHHHHHHhcCCCEEEEe-------ccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceE-EEECCccc
Confidence 33445567899998862 343322 2233445555555555554322 4554 44555554
No 153
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.19 E-value=1.9e+02 Score=24.79 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred hcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh
Q 018685 266 TFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS 309 (352)
Q Consensus 266 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~ 309 (352)
.++||+|++..|. |+.... .-+.+.|..--+.+.+.+++
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~-----~~~~~~~~~~l~~li~~i~~ 104 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQN-----WKYKDDFKKDYETMIDSFQA 104 (188)
T ss_pred ccCCCEEEEEcccCCCCCCC-----CccHHHHHHHHHHHHHHHHH
Confidence 4799999999998 654432 12345555444444444444
No 154
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=28.98 E-value=5.8e+02 Score=25.40 Aligned_cols=105 Identities=19% Similarity=0.089 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCeEEEEeccCcCCchhhhhhcC---CCcEEEEEecCCCCCCCCcccCCcccccccCCCCCChHHHHHHHH
Q 018685 181 IHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS---DSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLD 257 (352)
Q Consensus 181 a~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~---d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl~~~~ 257 (352)
+..+.++.+.++|++|--|--.|.+..+.|.+ +..+.+.. ..-++++..+..+.....
T Consensus 163 i~~li~~~~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~-------------------~e~~~~~~~~~~~~~~~~ 223 (403)
T cd06361 163 MAHLIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIAF-------------------KEILPASLSDNTKLNRII 223 (403)
T ss_pred HHHHHHHcCCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEE-------------------EEEecCccCcchhHHHHH
Confidence 33344556899999998888888888877743 22232211 112233333433332233
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
..+...++.-+||+||+.+-.+ -...+++-+++.|...++++..|..
T Consensus 224 ~~~~~~ik~~~a~vVvv~~~~~-------------------~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 224 RTTEKIIEENKVNVIVVFARQF-------------------HVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHHHHhcCCCeEEEEEeChH-------------------HHHHHHHHHHHhCCCeEEEEECccc
Confidence 3444445677999999844311 1223555566666667777666654
No 155
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=28.81 E-value=1e+02 Score=29.69 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhh
Q 018685 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210 (352)
Q Consensus 177 vAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if 210 (352)
+..+++|+.++.+.+||++|--|-=.|.+..+.|
T Consensus 120 ~~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~ 153 (348)
T cd06355 120 IIPAVDWLMSNKGGKRFYLVGSDYVYPRTANKIL 153 (348)
T ss_pred HHHHHHHHHhccCCCeEEEECCcchHHHHHHHHH
Confidence 3456788887777899999977777787777765
No 156
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.58 E-value=2e+02 Score=26.41 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC-CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI-SPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l-t~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
+.+.+...+++++++.||| |++..+.. ++..+.++...+.++++++|..++++.+
T Consensus 114 ~~~~i~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~ 169 (237)
T TIGR03877 114 LIDVLRQAIRDINAKRVVI---------DSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQ 169 (237)
T ss_pred HHHHHHHHHHHhCCCEEEE---------cChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3334444557789998887 55555433 2333445556677788888998888754
No 157
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=28.56 E-value=82 Score=31.66 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEE
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYN 275 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvs 275 (352)
.+++++.+.=+++|...++.|+||++||-
T Consensus 85 ~~l~e~~~~Rs~lil~t~~~fkPDi~IVd 113 (400)
T COG4671 85 GDLEETKKLRSQLILSTAETFKPDIFIVD 113 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44788888888899999999999999984
No 158
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=28.41 E-value=1.5e+02 Score=22.79 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=13.2
Q ss_pred HhhCCCCEEEEeCCCCC
Q 018685 307 ARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 307 a~~~~~~~v~vleGGY~ 323 (352)
....|.+=|.++.|||.
T Consensus 92 l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 92 LKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHTTTSSEEEETTHHH
T ss_pred HHHcCCCCEEEecChHH
Confidence 44467777899999994
No 159
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=28.38 E-value=81 Score=27.70 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=29.5
Q ss_pred cCCCEEEEEcCC-CCCCCCC-------CCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 018685 267 FDPELVIYNAGT-DILEGDP-------LGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (352)
Q Consensus 267 f~PdlIvvsaG~-D~~~~Dp-------lg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~v 317 (352)
.+||+|++..|. |....-+ ...+..+.+.|...-+.+++.+++. +.+|+++
T Consensus 67 ~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~ 127 (204)
T cd04506 67 KKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLV 127 (204)
T ss_pred ccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 589999999998 6543211 1223334556665555555656554 3455544
No 160
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.32 E-value=66 Score=28.59 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=11.1
Q ss_pred CeEEEEeccCcCC
Q 018685 191 SRVMIIDLDAHQG 203 (352)
Q Consensus 191 ~rV~IiD~DvHHG 203 (352)
+||++||+|....
T Consensus 47 ~rVllID~D~~~~ 59 (204)
T TIGR01007 47 YKTLLIDGDMRNS 59 (204)
T ss_pred CeEEEEeCCCCCh
Confidence 6999999998754
No 161
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.19 E-value=68 Score=29.42 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCC
Q 018685 253 LKKLDEALEVAGHTFDPELVIYNAGT 278 (352)
Q Consensus 253 l~~~~~~l~p~~~~f~PdlIvvsaG~ 278 (352)
..+|++.+...+++++||+|++ |||
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvL-AGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVL-AGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE-cch
Confidence 3456667777789999999876 665
No 162
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=28.11 E-value=2.2e+02 Score=25.12 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=28.6
Q ss_pred HHHhhcC-CCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC
Q 018685 262 VAGHTFD-PELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN 311 (352)
Q Consensus 262 p~~~~f~-PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~ 311 (352)
..++.-. ||+|++..|. |+. |.....-..+.+....+.+.+..++.+
T Consensus 70 ~~l~~~~~~d~v~i~lG~ND~~---~~~~~~p~~~~~~~~~~~li~~~~~~~ 118 (216)
T COG2755 70 ALLKQHLPPDLVIIMLGGNDIG---PLRGFSPNAAEFTKNLRQLIQALRKAN 118 (216)
T ss_pred HHHhccCCCCEEEEEeeccccc---hhcccCccHHHHHHHHHHHHHHHHHhc
Confidence 3334444 9999999998 665 222222233666666666666666654
No 163
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=28.04 E-value=2.9e+02 Score=28.11 Aligned_cols=69 Identities=6% Similarity=0.048 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCCCC-CCCCCCCCCcCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCCCCCCCh-HHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGTDI-LEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGYMKSS-ARVI 330 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~D~-~~~Dplg~~~lt~~~y~~~~~~l~~~a~~-~~~~~v~vleGGY~~~~-~~~~ 330 (352)
+.+.+.+..+.+.++|++|+|.+++=+ ..+| ..+. ++++ .+.||+.+---||...+ ....
T Consensus 73 ~~L~~~i~~~~~~~~P~~I~V~tTC~se~IGd-------Di~~----------~~~~~~~~pVi~v~tpgF~~~s~~~G~ 135 (422)
T TIGR02015 73 EDVRCSVHKLADPASYDAIVVINLCVPTASGV-------PLEL----------LPKRINGVRVLGIDVPGFGVPTHAEAK 135 (422)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCcHHHhcC-------cHHH----------HHHhcCCCCeEEEeCCCCCCchHHHHH
Confidence 566777777778899999999877311 1112 0111 1122 47899999999995433 4444
Q ss_pred HHHHHHHhh
Q 018685 331 ANSVENLSR 339 (352)
Q Consensus 331 ~~~v~~l~~ 339 (352)
...+.+++.
T Consensus 136 d~a~~ai~~ 144 (422)
T TIGR02015 136 DVLVSAMLK 144 (422)
T ss_pred HHHHHHHHH
Confidence 444444443
No 164
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=28.03 E-value=1.2e+02 Score=26.92 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCC
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGML 289 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~ 289 (352)
|+.-...+.+.|...+....-++||++-|.|-.-+|-||-+
T Consensus 5 ~~~a~~~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGPL 45 (163)
T PF06866_consen 5 DKNAPEKLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGPL 45 (163)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEECCCCCccccccch
Confidence 44444555555555555557889999999999999988853
No 165
>PRK04328 hypothetical protein; Provisional
Probab=27.79 E-value=1.9e+02 Score=26.89 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCC-HHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS-PDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt-~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
..+...+++++|+.||+ |++..+.+. ++.+.++...+.+++++++..++++.+=
T Consensus 118 ~~i~~~i~~~~~~~vVI---------DSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~ 172 (249)
T PRK04328 118 DVLRQAIKDIGAKRVVI---------DSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQV 172 (249)
T ss_pred HHHHHHHHhhCCCEEEE---------eChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 34455567789998887 555544332 3334555556777778888888887643
No 166
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=27.66 E-value=70 Score=29.90 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=12.1
Q ss_pred CeEEEEeccCcCCc
Q 018685 191 SRVMIIDLDAHQGN 204 (352)
Q Consensus 191 ~rV~IiD~DvHHGn 204 (352)
+||++||+|.+..+
T Consensus 133 ~~VllID~D~~~~~ 146 (274)
T TIGR03029 133 EKTLLIDANLRDPV 146 (274)
T ss_pred CeEEEEeCCCCCcc
Confidence 79999999997754
No 167
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=27.65 E-value=2.2e+02 Score=29.85 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=38.8
Q ss_pred HHHHHHHHhhc-CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC-CCCEEEEeCCCCCCChHHH-HHH
Q 018685 257 DEALEVAGHTF-DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR-NIPIVMLTSGGYMKSSARV-IAN 332 (352)
Q Consensus 257 ~~~l~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~-~~~~v~vleGGY~~~~~~~-~~~ 332 (352)
.+.|..+++.| +|++|+|..+. =+..+|.+ ..+ +.+..++. +.||+.+--.||.-.+... ...
T Consensus 116 ~~~I~ea~~~~~~p~~I~V~tTC~t~lIGDDi----------~av---~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~ 182 (513)
T TIGR01861 116 KQNIIEAFKAFPHIKRMTIYQTCATALIGDDI----------AAI---AKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHK 182 (513)
T ss_pred HHHHHHHHHhCCCCCeEEEEccCchhhccCCH----------HHH---HHHHHHhcCCCcEEEEeCCCccCccccchHHH
Confidence 34455566788 59988877664 33344432 221 22222334 6799999999997644222 333
Q ss_pred HHHHHhh
Q 018685 333 SVENLSR 339 (352)
Q Consensus 333 ~v~~l~~ 339 (352)
.+.+++.
T Consensus 183 a~~ali~ 189 (513)
T TIGR01861 183 INIAWIN 189 (513)
T ss_pred HHHHHHH
Confidence 4444444
No 168
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=27.59 E-value=3.1e+02 Score=21.71 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=8.8
Q ss_pred CEEEEeCCCCC
Q 018685 313 PIVMLTSGGYM 323 (352)
Q Consensus 313 ~~v~vleGGY~ 323 (352)
.-+.+|+|||+
T Consensus 99 ~~v~~l~GG~~ 109 (113)
T cd01443 99 PKSYILTGGIK 109 (113)
T ss_pred CeEEEECChhh
Confidence 45788999995
No 169
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=27.39 E-value=65 Score=27.71 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.5
Q ss_pred HcCCCeEEEEeccCcC
Q 018685 187 QLNISRVMIIDLDAHQ 202 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHH 202 (352)
+.| .||++||.|.-.
T Consensus 26 ~~g-~~vllvD~D~q~ 40 (169)
T cd02037 26 KLG-YKVGLLDADIYG 40 (169)
T ss_pred HcC-CcEEEEeCCCCC
Confidence 335 699999999843
No 170
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=27.37 E-value=68 Score=27.82 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIY 274 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvv 274 (352)
-+...+.+.+.+.+++++||+||-
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Confidence 445556667788889999999985
No 171
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.28 E-value=71 Score=31.85 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=14.4
Q ss_pred HcCCCeEEEEeccCcCCchhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq 207 (352)
..| .||++||+|. +||=|+
T Consensus 131 ~~G-~rVLlID~Dp-Q~~ls~ 149 (387)
T TIGR03453 131 LRG-YRVLAIDLDP-QASLSA 149 (387)
T ss_pred hcC-CCEEEEecCC-CCCHHH
Confidence 345 6999999997 777555
No 172
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.92 E-value=51 Score=33.34 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.1
Q ss_pred cCCchhhhhhcC-------C-----------CcEEEEEecC
Q 018685 201 HQGNGHEKDFSS-------D-----------SRVYILDMFN 223 (352)
Q Consensus 201 HHGnGTq~if~~-------d-----------~~Vl~iSiH~ 223 (352)
|||||++.++.+ . .+||+++||.
T Consensus 167 h~~DGasQ~LssCqrDFRNkPyPvRarItY~~nvLtv~inn 207 (497)
T KOG3838|consen 167 HPGDGASQGLSSCQRDFRNKPYPVRARITYYGNVLTVMINN 207 (497)
T ss_pred CCCccHHHHHHHhhHHhccCCCCceEEEEEeccEEEEEEcC
Confidence 899999998743 2 5899999996
No 173
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=26.84 E-value=1.9e+02 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC
Q 018685 267 FDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN 311 (352)
Q Consensus 267 f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~ 311 (352)
-+|.+|+|..|. |+..+..-..=.++++.|++--+.+++..++..
T Consensus 121 ~~P~lVtI~lGgND~C~g~~d~~~~tp~eefr~NL~~~L~~Lr~~l 166 (305)
T cd01826 121 DKPALVIYSMIGNDVCNGPNDTINHTTPEEFYENVMEALKYLDTKL 166 (305)
T ss_pred CCCeEEEEEeccchhhcCCCccccCcCHHHHHHHHHHHHHHHHhcC
Confidence 469999998777 888873222225889999887777777777763
No 174
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=26.77 E-value=2.2e+02 Score=28.01 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEe-CCCCCCCh-------HHHHHHHHHHHh
Q 018685 291 ISPDGIAARDEKTFRFARSRNIPIVMLT-SGGYMKSS-------ARVIANSVENLS 338 (352)
Q Consensus 291 lt~~~y~~~~~~l~~~a~~~~~~~v~vl-eGGY~~~~-------~~~~~~~v~~l~ 338 (352)
+++++|.+..+ ++++|.++++|+|.+. ..|+.+.. ++.++.++.++.
T Consensus 132 ~~p~g~rKa~R-~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s 186 (316)
T TIGR00513 132 PAPEGYRKALR-LMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMA 186 (316)
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66899999887 7799999999988654 44555332 334555555444
No 175
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.72 E-value=2.8e+02 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=10.6
Q ss_pred hhcCCCEEEEEcC
Q 018685 265 HTFDPELVIYNAG 277 (352)
Q Consensus 265 ~~f~PdlIvvsaG 277 (352)
.+.+||+|.+|+-
T Consensus 47 ~~~~pdiV~iS~~ 59 (125)
T cd02065 47 KEEDADVVGLSAL 59 (125)
T ss_pred HHcCCCEEEEecc
Confidence 4589999999874
No 176
>PRK07004 replicative DNA helicase; Provisional
Probab=26.72 E-value=1.3e+02 Score=30.91 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred hhc-CCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 265 HTF-DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 265 ~~f-~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+++ ++++||| |.|+-+.- ..+.+.++++.|+.+|+++++||+++
T Consensus 320 ~~~~~~~lviI---------DYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~l 370 (460)
T PRK07004 320 RQCGKLGLIII---------DYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIAL 370 (460)
T ss_pred HhCCCCCEEEE---------ChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 444 5888887 44433321 23457899999999999999999865
No 177
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=26.51 E-value=69 Score=32.12 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhcCCCEEEEE
Q 018685 252 YLKKLDEALEVAGHTFDPELVIYN 275 (352)
Q Consensus 252 yl~~~~~~l~p~~~~f~PdlIvvs 275 (352)
-+.+++... .+++.|+||+||||
T Consensus 223 ~m~~~E~f~-~Al~~fqPdLvVvs 245 (478)
T KOG4184|consen 223 HMRAVEQFT-DALKMFQPDLVVVS 245 (478)
T ss_pred HHHHHHHHH-HHHHHhCCCEEEEe
Confidence 355555444 45699999999985
No 178
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=26.48 E-value=1.6e+02 Score=28.01 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 253 l~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
.+++.+.|..+.+++++|+||+.+ ..--|++.+|.+.|.++- ++|+-++..+.-=|+.
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~~~~L~--------~~GvDviT~GNH~wdk 69 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKIAEELF--------KAGVDVITMGNHIWDK 69 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHHHHHHH--------HHT-SEEE--TTTTSS
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHHHHHHH--------hcCCCEEecCcccccC
Confidence 467888899999999999999864 444678889999887642 3466677766666654
No 179
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=26.18 E-value=3.1e+02 Score=25.35 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--EEEE--------EcCCCCCCCCCCCCCcCCHHH---HHHHHHHHHHHHhhCCCCEE
Q 018685 249 TNEYLKKLDEALEVAGHTFDPE--LVIY--------NAGTDILEGDPLGMLKISPDG---IAARDEKTFRFARSRNIPIV 315 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~Pd--lIvv--------saG~D~~~~Dplg~~~lt~~~---y~~~~~~l~~~a~~~~~~~v 315 (352)
+.+.+..|.+++..+.. +|+ .+|| |+|.|...- ....-+.+. +......++.....+..|+|
T Consensus 24 ~~~~~~eL~~al~~~~~--d~~~~~vVV~~g~g~~FsaG~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 98 (239)
T PLN02267 24 NPTLIDSIRSALRQVKS--QATPGSVLITTAEGKFFSNGFDLAWA---QAAGSAPSRLHLMVAKLRPLVADLISLPMPTI 98 (239)
T ss_pred CHHHHHHHHHHHHHHHh--CCCCceEEEEcCCCCceeCCcCHHHH---hccccCHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 56777788887776633 444 2343 556665321 110011111 21111222232344678999
Q ss_pred EEeCC
Q 018685 316 MLTSG 320 (352)
Q Consensus 316 ~vleG 320 (352)
+...|
T Consensus 99 AaV~G 103 (239)
T PLN02267 99 AAVTG 103 (239)
T ss_pred EEECC
Confidence 88765
No 180
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=25.56 E-value=4.3e+02 Score=22.65 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe-------CCCCCC
Q 018685 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDP-LGMLKISPDGIAARDEKTFRFARSRNIPIVMLT-------SGGYMK 324 (352)
Q Consensus 253 l~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dp-lg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl-------eGGY~~ 324 (352)
+..+.+.|..+++.|+||.+++ +++ ++...=|.-...+.-..++..+...++|+..+- --||..
T Consensus 44 l~~I~~~l~~~i~~~~Pd~vai--------E~~~~~~n~~s~~~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~ 115 (154)
T cd00529 44 LKTIYDGLNEVIDQFQPDVVAI--------ERVFFAKNPDSALKLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGK 115 (154)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE--------EEhhcccChHHHHHHHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCC
Confidence 4445566778889999999887 332 232111111222333445566666777764332 125554
Q ss_pred ChHHHHHHHHHHHhhcC
Q 018685 325 SSARVIANSVENLSRKG 341 (352)
Q Consensus 325 ~~~~~~~~~v~~l~~~~ 341 (352)
.+=+.+..-|+.+++..
T Consensus 116 A~KeqV~~mv~~~l~~~ 132 (154)
T cd00529 116 ADKDQVQHMVKRLLNLS 132 (154)
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 44456778888887743
No 181
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.42 E-value=2.4e+02 Score=28.06 Aligned_cols=100 Identities=16% Similarity=0.296 Sum_probs=60.8
Q ss_pred chhhhhhcCCCcEEEEEecCCCCCCCCcccCCcccccccCCCCCChHHHHHHHHHHHHHHHhhc-CCCEEEEEcCC----
Q 018685 204 NGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTF-DPELVIYNAGT---- 278 (352)
Q Consensus 204 nGTq~if~~d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl~~~~~~l~p~~~~f-~PdlIvvsaG~---- 278 (352)
.|.+..|.+++.|-....-.. -.|..-++|..=.+. +..++.+. +|-.|||..|.
T Consensus 132 ~gl~~al~t~~~i~i~~~sn~-------------------SSGlvr~dYfdWpk~-i~~~l~~~~~~a~vVV~lGaND~q 191 (354)
T COG2845 132 EGLDKALATSPGITIVTRSNG-------------------SSGLVRDDYFDWPKA-IPELLDKHPKPAAVVVMLGANDRQ 191 (354)
T ss_pred HHHHHHhccCCCcEEEEeecC-------------------CCCcccccccccHHH-HHHHHHhcCCccEEEEEecCCCHH
Confidence 456667777777766433211 022333445443333 33444555 99999999996
Q ss_pred CCCCCCCCCCCcCC--HHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 279 DILEGDPLGMLKIS--PDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 279 D~~~~Dplg~~~lt--~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
|...+|-+-.+.=. .+.|.++...+.++|.....||++++-==..
T Consensus 192 ~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~~~~V~WvGmP~~r 238 (354)
T COG2845 192 DFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTHKVPVLWVGMPPFR 238 (354)
T ss_pred hcccCCeeeecCchHHHHHHHHHHHHHHHHhcccCCcEEEeeCCCcc
Confidence 33444422222111 4679999999999999889999988754443
No 182
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=25.35 E-value=2.3e+02 Score=27.09 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEc-------CCCC----CCC-----CCCCCC----cCCHHHHHHHHHHHHHHHhh
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNA-------GTDI----LEG-----DPLGML----KISPDGIAARDEKTFRFARS 309 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsa-------G~D~----~~~-----Dplg~~----~lt~~~y~~~~~~l~~~a~~ 309 (352)
+.+..+++++=..+ ++++||.|||-. ..|. ..+ .|++.+ ..+-++=.++++.|.+.+.+
T Consensus 29 ~~~~~a~~~~~~~v-~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~~~g~~~~~~~~~~~~~~g~~eLA~~i~~~l~~ 107 (277)
T cd07368 29 EICWHAYAICAERL-AALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGDVDGPYDPLPGLPRAVIENNEPLAHHIMQHGLE 107 (277)
T ss_pred HHHHHHHHHHHHHH-HHcCCCEEEEEcCchHhhhhhccCCceEEecccccCCccccCCCCcccCcCCHHHHHHHHHHHHH
Q ss_pred CCCCEEEEeCCCCC
Q 018685 310 RNIPIVMLTSGGYM 323 (352)
Q Consensus 310 ~~~~~v~vleGGY~ 323 (352)
.++++...-+-|.+
T Consensus 108 ~g~~~~~~~~~~lD 121 (277)
T cd07368 108 YGIDWAVARSFTVD 121 (277)
T ss_pred cCCCEeeecCcCCC
No 183
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.03 E-value=1.7e+02 Score=23.96 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=11.4
Q ss_pred HHhhcCCCEEEEEcC
Q 018685 263 AGHTFDPELVIYNAG 277 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG 277 (352)
.+.+.+||+|++|+-
T Consensus 45 ~a~~~~~d~V~iS~~ 59 (122)
T cd02071 45 AAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHcCCCEEEEccc
Confidence 346779999999754
No 184
>PRK06904 replicative DNA helicase; Validated
Probab=24.89 E-value=2.3e+02 Score=29.25 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 268 DPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 268 ~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+.++||| |.|+-+.- ....+.++++.|+.+|+++++||+++-
T Consensus 334 ~~~lvvI---------DYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~ls 381 (472)
T PRK06904 334 GLSLIMV---------DYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALS 381 (472)
T ss_pred CCCEEEE---------ecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 5788887 34443321 233578899999999999999988763
No 185
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=24.84 E-value=81 Score=30.43 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=11.4
Q ss_pred CeEEEEeccCcCCc
Q 018685 191 SRVMIIDLDAHQGN 204 (352)
Q Consensus 191 ~rV~IiD~DvHHGn 204 (352)
+||++||.|...|+
T Consensus 123 ~~VlLvD~D~~~~~ 136 (322)
T TIGR03815 123 LRTLLVDADPWGGG 136 (322)
T ss_pred CCEEEEecCCCCCC
Confidence 69999999976653
No 186
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=24.60 E-value=4.4e+02 Score=23.79 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHHHHHH
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI--SPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSVENL 337 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l--t~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~v~~l 337 (352)
+.+.+.+++-|++++-.--=....|-+-.+.- .-..|.. .+.++.++.+.|.|.+=+-||... -...-+.|..+
T Consensus 106 ~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~---~l~~~L~~~~~~~v~i~~~~y~eR-~~~~~~aV~el 181 (187)
T COG3172 106 LQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQN---LLEQMLEENNIPFVVIEGEDYLER-YLQAVEAVEEL 181 (187)
T ss_pred HHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHH---HHHHHHHHhCCcEEEEcCCCHHHH-HHHHHHHHHHH
Confidence 45677888999988865543333444333322 3344443 566677777888876655599543 23344566666
Q ss_pred hhc
Q 018685 338 SRK 340 (352)
Q Consensus 338 ~~~ 340 (352)
++.
T Consensus 182 l~~ 184 (187)
T COG3172 182 LGE 184 (187)
T ss_pred Hhc
Confidence 664
No 187
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=24.53 E-value=82 Score=30.21 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=15.5
Q ss_pred HHHHcCCCeEEEEeccCcCCchhhh
Q 018685 184 AFVQLNISRVMIIDLDAHQGNGHEK 208 (352)
Q Consensus 184 l~~~~~~~rV~IiD~DvHHGnGTq~ 208 (352)
++.+.| +||++||+|.. ||=|+.
T Consensus 23 ~La~~G-~rVLlID~DpQ-~n~t~~ 45 (290)
T CHL00072 23 ALARRG-KKVLQIGCDPK-HDSTFT 45 (290)
T ss_pred HHHHCC-CeEEEEeccCC-Cccccc
Confidence 344445 69999999986 554443
No 188
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=24.48 E-value=28 Score=26.11 Aligned_cols=8 Identities=38% Similarity=1.273 Sum_probs=7.2
Q ss_pred Ccccccch
Q 018685 169 GGFCAYAD 176 (352)
Q Consensus 169 ~GFC~fNn 176 (352)
-|||-|||
T Consensus 26 kgfckf~n 33 (77)
T PF13050_consen 26 KGFCKFNN 33 (77)
T ss_pred ccccccCC
Confidence 48999999
No 189
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=24.46 E-value=74 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcCCCEEEE
Q 018685 256 LDEALEVAGHTFDPELVIY 274 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvv 274 (352)
..+.|..++++++||+||.
T Consensus 109 ~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 3345556779999998875
No 190
>PRK09482 flap endonuclease-like protein; Provisional
Probab=24.43 E-value=3.3e+02 Score=25.92 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCC------C----CCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGD------P----LGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~D------p----lg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
.-+..|-+.+..++++++|+.|++. ||....- = -+.=.-+++.+...-..+.+++...|+|++ ..-
T Consensus 29 ~av~gf~~~l~~ll~~~~p~~i~v~--fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~--~~~ 104 (256)
T PRK09482 29 ACVETCQHALDKLIRHSQPTHAVAV--FDGDARSSGWRHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSW--HAD 104 (256)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEE--EeCCCCCcccHHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEe--ccC
Confidence 3456677788888899999987765 7764321 0 000123467777766778888888888765 667
Q ss_pred CCCCC
Q 018685 321 GYMKS 325 (352)
Q Consensus 321 GY~~~ 325 (352)
||.-+
T Consensus 105 g~EAD 109 (256)
T PRK09482 105 GNEAD 109 (256)
T ss_pred CcCHH
Confidence 88643
No 191
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=23.77 E-value=3.7e+02 Score=24.92 Aligned_cols=71 Identities=24% Similarity=0.244 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
.=+.+.+..+.+.+..+..+-....||+ ++|.|...- ....-..+.+......++.....+..|+|+...
T Consensus 28 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~---~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 104 (259)
T PRK06688 28 ALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDF---PKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN 104 (259)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHH---hccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3466777888887776643333445665 455554321 000000012222222333333456788888766
Q ss_pred C
Q 018685 320 G 320 (352)
Q Consensus 320 G 320 (352)
|
T Consensus 105 G 105 (259)
T PRK06688 105 G 105 (259)
T ss_pred C
Confidence 4
No 192
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=23.73 E-value=2.6e+02 Score=27.40 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEe--CCCCCCCh------HHHHHHHHHHHhhcC
Q 018685 291 ISPDGIAARDEKTFRFARSRNIPIVMLT--SGGYMKSS------ARVIANSVENLSRKG 341 (352)
Q Consensus 291 lt~~~y~~~~~~l~~~a~~~~~~~v~vl--eGGY~~~~------~~~~~~~v~~l~~~~ 341 (352)
-.++||++--+ ++++|++++.|++.+. -|-|-.-. ++++|.++..+..-+
T Consensus 131 ~~PeGyRKAlR-lm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~Lk 188 (317)
T COG0825 131 PRPEGYRKALR-LMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLK 188 (317)
T ss_pred CCchHHHHHHH-HHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCC
Confidence 35899998665 8899999999998764 57775322 678888888877643
No 193
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=23.70 E-value=95 Score=29.90 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=17.0
Q ss_pred HHHHHHHHhhcCCCEEEE--EcCCCCCC
Q 018685 257 DEALEVAGHTFDPELVIY--NAGTDILE 282 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvv--saG~D~~~ 282 (352)
.+.|..++++++||+||. ..|.|.|-
T Consensus 112 ~~~l~~~Ir~~~PdvViT~~p~g~~~Hp 139 (284)
T TIGR03445 112 AGALVAVIREVRPHVVVTYDPNGGYGHP 139 (284)
T ss_pred HHHHHHHHHHhCCcEEEecCCCCCCCCc
Confidence 345556779999998886 33444443
No 194
>PRK10425 DNase TatD; Provisional
Probab=23.53 E-value=6.2e+02 Score=23.76 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEE-EEecCCCCCCCCcccCCcccccccCCCCCChHHHH
Q 018685 175 ADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYI-LDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYL 253 (352)
Q Consensus 175 NnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~-iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl 253 (352)
.|..-.++.+++ .|+.+++++-.|...-.-+.++...-+.|+. +-+|-. . ++ . ..+ +.+
T Consensus 15 ~d~~~vl~~a~~-~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~-----~----------~~--~-~~~-~~~ 74 (258)
T PRK10425 15 KDRDDVVARAFA-AGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPH-----D----------SS--Q-WQA-ATE 74 (258)
T ss_pred ccHHHHHHHHHH-CCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcC-----c----------cc--c-CCH-HHH
Confidence 565555565554 4788999999998888888888877777653 566621 1 00 0 012 222
Q ss_pred HHHHHHHHHHHhhcCCCEEEEE-cCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEE
Q 018685 254 KKLDEALEVAGHTFDPELVIYN-AGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvs-aG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~ 316 (352)
..+.+. ++ +++++-|- .|.|-+.... +.+--.+.-+.-+++|++++.|+++
T Consensus 75 ~~l~~~----~~--~~~~vaIGEiGLDy~~~~~------~~~~Q~~vF~~ql~lA~~~~~Pv~i 126 (258)
T PRK10425 75 EAIIEL----AA--QPEVVAIGECGLDFNRNFS------TPEEQERAFVAQLAIAAELNMPVFM 126 (258)
T ss_pred HHHHHh----cc--CCCEEEEeeeeeccccCCC------CHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 333322 22 36776664 8888764221 1111223344566788888888764
No 195
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=23.47 E-value=2.3e+02 Score=26.85 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred cCCCCCChH----HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCC----------------------CCCCCcCCHHH
Q 018685 242 EVVSGTTTN----EYLKKLDEALEVAGHTFDPELVIYNAGTDILEGD----------------------PLGMLKISPDG 295 (352)
Q Consensus 242 PL~~g~~d~----~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~D----------------------plg~~~lt~~~ 295 (352)
|++.-..+. .+.++|+++-..+ ++.+||.||| +.+|... +++++.....+
T Consensus 13 P~~~~~~~~~~~~~~~~a~~~lg~~l-~~~~Pd~Ivv---iS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p~~~~g 88 (271)
T cd07373 13 PLPQLRPDVPSWGQFAAATRQAGKAL-AASRPDVVLV---YSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELPYDIRS 88 (271)
T ss_pred CccccCCCcccHHHHHHHHHHHHHHH-HHhCCCEEEE---ECCCCcccccceeEeeccccccccccChhHhcCcccccCC
Q ss_pred HHHHHHHHHHHHhhCCCCEEEE
Q 018685 296 IAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 296 y~~~~~~l~~~a~~~~~~~v~v 317 (352)
=.++++.+.+.+++.++++..+
T Consensus 89 ~~eLA~~i~~~~~~~gi~~~~~ 110 (271)
T cd07373 89 DTALAEACVTACPEHGVHARGV 110 (271)
T ss_pred CHHHHHHHHHHHHHCCCcEEEe
No 196
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=23.40 E-value=1.8e+02 Score=29.07 Aligned_cols=46 Identities=30% Similarity=0.486 Sum_probs=31.6
Q ss_pred HhhcCCCEEEEEcCCCCCCCCCCCCCc--------CCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 264 GHTFDPELVIYNAGTDILEGDPLGMLK--------ISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 264 ~~~f~PdlIvvsaG~D~~~~Dplg~~~--------lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+++++|++||| |++..+. =+.....+....|.++|++.+++++++.
T Consensus 154 i~~~~~~lVVI---------DSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 154 IEELKPDLVII---------DSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred HHhcCCcEEEE---------cchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36789999997 3332221 1234566677788999999999888774
No 197
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=23.15 E-value=2.6e+02 Score=27.62 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEE-----cCC--C-----------CCCCCC---CCCCcC----CHHHHHHHHHHHH
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYN-----AGT--D-----------ILEGDP---LGMLKI----SPDGIAARDEKTF 304 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvs-----aG~--D-----------~~~~Dp---lg~~~l----t~~~y~~~~~~l~ 304 (352)
.....+++++=.. +++++||.|||- .|| | .+.+|. ++.+.+ +..+=..+++.|.
T Consensus 29 ~~~~~a~~~l~~~-v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~~~~~~~~~~~~~gd~eLA~~I~ 107 (329)
T cd07369 29 ARTEEATLKLGRT-LTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLMEALRVPKKHYFPGNPEVAEQLL 107 (329)
T ss_pred HHHHHHHHHHHHH-HHHhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhccccCCCCcccCCCCCHHHHHHHH
Confidence 3445555554443 488999998884 222 3 123331 223443 2233445666777
Q ss_pred HHHhhCCCCEEEEeCCCCC
Q 018685 305 RFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 305 ~~a~~~~~~~v~vleGGY~ 323 (352)
+.+.+.|+++....+-+|+
T Consensus 108 ~~l~~~G~dva~~~~~~~D 126 (329)
T cd07369 108 RALVHDSFDCARMGEIEYG 126 (329)
T ss_pred HHHHHCCCCeeecCCcCCC
Confidence 7777777777766665553
No 198
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=23.11 E-value=2.6e+02 Score=27.08 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCC-------CCCCCC-----------C-CCCCcCCHHHHHHHHHHHHHHHhhC
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGT-------DILEGD-----------P-LGMLKISPDGIAARDEKTFRFARSR 310 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-------D~~~~D-----------p-lg~~~lt~~~y~~~~~~l~~~a~~~ 310 (352)
+....+++++-..+ ++++||.|||-.-- |..-.. | +..+.....+=.++++.|.+.+.+.
T Consensus 33 ~~~~~a~~~~~~~i-~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~ 111 (294)
T cd07372 33 EQLRWAYERARESI-EALKPDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKA 111 (294)
T ss_pred HHHHHHHHHHHHHH-HHcCCCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHC
Q ss_pred CCCEEEEeCCCCCCC
Q 018685 311 NIPIVMLTSGGYMKS 325 (352)
Q Consensus 311 ~~~~v~vleGGY~~~ 325 (352)
|+++..+..-.+..+
T Consensus 112 Gi~~~~~~~~~~~LD 126 (294)
T cd07372 112 GLVTKMMRNPRFRVD 126 (294)
T ss_pred CCCeeeccCCCCCCC
No 199
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=23.09 E-value=13 Score=27.91 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC
Q 018685 258 EALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRN 311 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~ 311 (352)
.++..+.++|+-++=|++++.|-..+.|+|.|-+.-.|=..-.+...++.++.+
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~ 70 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQG 70 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCC
Confidence 356677789999999999999999999999876643222211223444445544
No 200
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=22.96 E-value=86 Score=30.90 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.9
Q ss_pred CeEEEEeccCcCCchhhhhhc
Q 018685 191 SRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~if~ 211 (352)
+||++||.|.++++ +..+|.
T Consensus 60 ~rVllid~D~~~~~-~~~~~g 79 (329)
T cd02033 60 KRVLLIGCDPKSDT-TSLLFG 79 (329)
T ss_pred CcEEEEEeeecccc-cchhcc
Confidence 69999999999865 555664
No 201
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.89 E-value=94 Score=28.69 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=34.7
Q ss_pred hcccccccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCc-CCch
Q 018685 150 RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH-QGNG 205 (352)
Q Consensus 150 ~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~~rV~IiD~DvH-HGnG 205 (352)
+|.++....| ++....|+..|..=.|+.. +..|++++-|+|+|.= .|.+
T Consensus 10 ~G~~Vr~~~G------~~~~~~~~~~dP~~~a~~~-~~~g~~~l~ivDLdaa~~g~~ 59 (229)
T PF00977_consen 10 NGRVVRLVKG------DRFSETVYSGDPVEVAKAF-NEQGADELHIVDLDAAKEGRG 59 (229)
T ss_dssp TTEEEEESTT------CCSCEECECCCHHHHHHHH-HHTT-SEEEEEEHHHHCCTHH
T ss_pred CCEEEECCCe------ecceeeEECcCHHHHHHHH-HHcCCCEEEEEEccCcccCch
Confidence 4555555555 4566788988888777777 5568999999999965 3655
No 202
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=22.80 E-value=3.9e+02 Score=27.18 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFR 305 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~ 305 (352)
.++...+|++++.-+ .+-+||+|+++ ||=+-.-.-|.+...+..+.+.+
T Consensus 24 ~~D~~~~f~eil~~a-~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQIA-KEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHHHH-HHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 467788999988765 78899999973 45444445567777777666665
No 203
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=22.66 E-value=4.6e+02 Score=24.82 Aligned_cols=82 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHhhc---CCCEEEEEcC-----CCCCCCCC--------------CCCCcCCHHHHHH
Q 018685 241 VEVVSGTTTNEYLKKLDEALEVAGHTF---DPELVIYNAG-----TDILEGDP--------------LGMLKISPDGIAA 298 (352)
Q Consensus 241 vPL~~g~~d~~yl~~~~~~l~p~~~~f---~PdlIvvsaG-----~D~~~~Dp--------------lg~~~lt~~~y~~ 298 (352)
+++|. .+.+++...+.+.+..+-++. +||.|||-.- |+....++ .|.-.....+=..
T Consensus 13 ~~~~~-~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~~gd~~ 91 (268)
T cd07367 13 ILMSP-KGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRELFPGHRE 91 (268)
T ss_pred cCcCC-CCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCcccCCCCHH
Q ss_pred HHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 299 RDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 299 ~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
+++.+.+.+.+.|+++...-+-+.+
T Consensus 92 LA~~i~~~l~~~g~~~~~~~~~~lD 116 (268)
T cd07367 92 FARAFVRQAAEDGFDLAQAEELRPD 116 (268)
T ss_pred HHHHHHHHHHHcCCCeeeecCccCC
No 204
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=22.63 E-value=61 Score=30.12 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHcCCCeEEEEeccCcCCchhhhh
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+.+.| ||++||+|.. ||-|+..
T Consensus 26 La~~G--rVLliD~Dpq-~~~~~~~ 47 (264)
T PRK13231 26 YSNDH--RVLVIGCDPK-ADTTRTL 47 (264)
T ss_pred cCCCC--EEEEEeEccC-cccchhh
Confidence 33456 8999999986 3444433
No 205
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.60 E-value=3.8e+02 Score=21.41 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=11.8
Q ss_pred HHhhcCCCEEEEEcC
Q 018685 263 AGHTFDPELVIYNAG 277 (352)
Q Consensus 263 ~~~~f~PdlIvvsaG 277 (352)
.+.+.+||+|.+|+-
T Consensus 45 ~~~~~~pdvV~iS~~ 59 (119)
T cd02067 45 AAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHcCCCEEEEecc
Confidence 346789999999764
No 206
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=22.44 E-value=3.6e+02 Score=24.47 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFA 307 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a 307 (352)
.+-|+.-. ...+...++||.|++ -||=+++=.++.+.|.+..++..++.
T Consensus 28 ~D~YL~~~---~~~~~~~l~Pd~V~f-------LGDLfd~~w~~D~ef~~~~~RF~~if 76 (193)
T cd08164 28 NDYFLGHI---VSMMQFWLKPDAVVV-------LGDLFSSQWIDDEEFAKRADRYRRRF 76 (193)
T ss_pred hHHHHHHH---HHHHHHhcCCCEEEE-------eccccCCCcccHHHHHHHHHHHHHHh
Confidence 45665533 333446689999986 35666655678888988888887765
No 207
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=22.43 E-value=2.2e+02 Score=28.44 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHH---HHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-hhCCCCEEEE
Q 018685 247 TTTNEYLKKLDEAL---EVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFA-RSRNIPIVML 317 (352)
Q Consensus 247 ~~d~~yl~~~~~~l---~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a-~~~~~~~v~v 317 (352)
|||.-|.+-.++++ ..+++.++||++|--=.|++ ..|..+.-.+.+.. +++++|++..
T Consensus 56 CGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFna-------------grYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 56 CGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNA-------------GRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred ECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCC-------------chHHHHHHHHHHHHHHhhCCCEEEE
Confidence 56766666555543 35568999999997666653 33666555555533 3468887643
No 208
>PRK08506 replicative DNA helicase; Provisional
Probab=22.23 E-value=2.4e+02 Score=29.17 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 293 PDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 293 ~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
......+++.|+.+|+++++||+++-
T Consensus 324 ~~ev~~isr~LK~lAkel~ipVi~ls 349 (472)
T PRK08506 324 HLQISEISRGLKLLARELDIPIIALS 349 (472)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 34577888999999999999998763
No 209
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=22.22 E-value=5.1e+02 Score=24.37 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--EEEE-------EcCCCCCCC-CCCCCCcCC-HHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 249 TNEYLKKLDEALEVAGHTFDPE--LVIY-------NAGTDILEG-DPLGMLKIS-PDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~Pd--lIvv-------saG~D~~~~-Dplg~~~lt-~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+.+.+..+.+++..+-. +|+ .||+ |+|.|...- ++....... ...|......++.....+..|+|+.
T Consensus 42 ~~~~~~eL~~~l~~~~~--d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 119 (277)
T PRK08258 42 TFESYAELRDLFRELVY--ADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAA 119 (277)
T ss_pred CHHHHHHHHHHHHHHhc--CCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45666777777766532 455 3554 556665421 100000000 1122222223333334568899877
Q ss_pred eCC
Q 018685 318 TSG 320 (352)
Q Consensus 318 leG 320 (352)
..|
T Consensus 120 V~G 122 (277)
T PRK08258 120 VDG 122 (277)
T ss_pred ECC
Confidence 665
No 210
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=22.11 E-value=2.9e+02 Score=23.45 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=24.0
Q ss_pred CCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC
Q 018685 269 PELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR 310 (352)
Q Consensus 269 PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~ 310 (352)
||+|++..|. |.... ...+.+.|....+.+++.+++.
T Consensus 56 pd~vii~~G~ND~~~~-----~~~~~~~~~~~~~~li~~i~~~ 93 (169)
T cd01831 56 PDLVVINLGTNDFSTG-----NNPPGEDFTNAYVEFIEELRKR 93 (169)
T ss_pred CCEEEEECCcCCCCCC-----CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998 54322 1245666666655666666554
No 211
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=22.02 E-value=4.9e+02 Score=26.33 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEE
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYN 275 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvs 275 (352)
++....++.++. .+.+.+||+||++
T Consensus 22 ~~~~~~l~~l~~-~i~~~~~D~viIa 46 (407)
T PRK10966 22 AEHQAFLDWLLE-QVQEHQVDAIIVA 46 (407)
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEEC
Confidence 345555565554 4478899999873
No 212
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=21.98 E-value=5.6e+02 Score=24.50 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=52.4
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHh----hc--CCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC
Q 018685 238 DQKVEVVSGTTTNEYLKKLDEALEVAGH----TF--DPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR 310 (352)
Q Consensus 238 ~~NvPL~~g~~d~~yl~~~~~~l~p~~~----~f--~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~ 310 (352)
-+|+..+. ..-.+.....+.++..+.+ .| ++++|+|..|. |........ ...+.+.|.+--+.+++..++.
T Consensus 84 ~~N~av~G-a~s~dL~~qa~~lv~r~~~~~~i~~~~dwklVtI~IG~ND~c~~~~~~-~~~~~~~~~~nL~~~L~~Lr~~ 161 (288)
T cd01824 84 GFNVAEPG-AKSEDLPQQARLLVRRMKKDPRVDFKNDWKLITIFIGGNDLCSLCEDA-NPGSPQTFVKNLRKALDILRDE 161 (288)
T ss_pred ceeecccC-cchhhHHHHHHHHHHHHhhccccccccCCcEEEEEecchhHhhhcccc-cCcCHHHHHHHHHHHHHHHHHh
Confidence 34665544 3345555555444444322 24 46679999887 876421111 1256788888777788888777
Q ss_pred CCCEEEEeCCCCCCC
Q 018685 311 NIPIVMLTSGGYMKS 325 (352)
Q Consensus 311 ~~~~v~vleGGY~~~ 325 (352)
..+..+++-|=|++.
T Consensus 162 ~P~~~V~lv~~~~~~ 176 (288)
T cd01824 162 VPRAFVNLVGLLNVA 176 (288)
T ss_pred CCCcEEEEEcCCCcH
Confidence 667777777777654
No 213
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=21.80 E-value=2.3e+02 Score=29.26 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCC--cCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 262 VAGHTFDPELVIYNAGTDILEGDPLGML--KISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~--~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
..+++++|+.||+ |++..+ .++.+.+.+....+.+++++.++.++++.+
T Consensus 347 ~~i~~~~~~~vvI---------Dsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~ 397 (484)
T TIGR02655 347 SEIADFKPARIAI---------DSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397 (484)
T ss_pred HHHHHcCCCEEEE---------cCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeec
Confidence 3448899999887 666643 355666666666688888888998888755
No 214
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=21.75 E-value=2.5e+02 Score=28.91 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=33.3
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCCcC--------CHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKI--------SPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l--------t~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
..+++.+|++||| |.+..+.. +...+.+....|.++|++.+..++++.
T Consensus 164 ~~i~~~~~~~vVI---------DSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 164 ANIEEENPQACVI---------DSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred HHHHhcCCcEEEE---------ecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3447789999987 33333321 234567777789999999998888774
No 215
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=21.47 E-value=1.4e+02 Score=28.34 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCEEEEe-CCCCCCCh-------HHHHHHHHHHHhh
Q 018685 290 KISPDGIAARDEKTFRFARSRNIPIVMLT-SGGYMKSS-------ARVIANSVENLSR 339 (352)
Q Consensus 290 ~lt~~~y~~~~~~l~~~a~~~~~~~v~vl-eGGY~~~~-------~~~~~~~v~~l~~ 339 (352)
.+++++|.+..+ ++++|.++++|+|.+. .+|+.+.. ++.++.++.++.+
T Consensus 78 ~~~~~g~rKa~R-~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~ 134 (256)
T PRK12319 78 QPHPEGYRKALR-LMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSD 134 (256)
T ss_pred CCCHHHHHHHHH-HHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhC
Confidence 467889999876 7799999999998764 44554422 2345555555443
No 216
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.39 E-value=2.7e+02 Score=27.04 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHHc----CCCeEEEEeccCcCCchhhhhhc
Q 018685 178 SLCIHYAFVQL----NISRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 178 AIAa~~l~~~~----~~~rV~IiD~DvHHGnGTq~if~ 211 (352)
...++|+.++. +.+||++|=-|--.|.+..+.|.
T Consensus 124 ~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~ 161 (351)
T cd06334 124 RALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALK 161 (351)
T ss_pred HHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHH
Confidence 34567777766 58999999888888888877764
No 217
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.35 E-value=5.2e+02 Score=24.67 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhc
Q 018685 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 178 AIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~ 211 (352)
...++++.++.+.+||++|=-|-..|+...+.|.
T Consensus 132 ~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~ 165 (362)
T cd06343 132 RIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGLK 165 (362)
T ss_pred HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHHH
Confidence 3566777777788999999777777777666553
No 218
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=21.31 E-value=31 Score=30.45 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=31.8
Q ss_pred HHHHHHHHHhh--cCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCC
Q 018685 256 LDEALEVAGHT--FDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGG 321 (352)
Q Consensus 256 ~~~~l~p~~~~--f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGG 321 (352)
|+++..++++. -++|+||+ |.+|.|.+...+|.+....+++ .+.|+++++-=.
T Consensus 81 fe~~~~~~L~~~~~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~ 135 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVI---------DEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKR 135 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE------------STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS
T ss_pred HHHHHHHHHHhhcCCCCEEEE---------eccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecC
Confidence 44433334443 58899987 9999999999999986655543 356788877554
No 219
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=21.04 E-value=3.5e+02 Score=24.27 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHhhc--CCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 249 TNEYLKKLDEALEVAGHTF--DPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f--~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
+.+....|++++..+ ++. +||+||+ + ||=... -+++.|.. +.++.++++.|++++.|
T Consensus 20 ~~~~~~~l~~~~~~i-~~~~~~~d~vi~-~------GDl~~~--~~~~~~~~----~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 20 GVDTAASLEAVLAHI-NALHPRPDLVLV-T------GDLTDD--GSPESYER----LRELLAALPIPVYLLPG 78 (240)
T ss_pred CcCHHHHHHHHHHHH-HhcCCCCCEEEE-C------ccCCCC--CCHHHHHH----HHHHHhhcCCCEEEeCC
Confidence 445567777777765 444 8998875 2 331111 12455554 34444556788766543
No 220
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=21.03 E-value=2.1e+02 Score=27.27 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC
Q 018685 253 LKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK 324 (352)
Q Consensus 253 l~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~ 324 (352)
..++.+-|..+..+|++|+||+.+ ..--|++.+|.+-|..+ .+.|+-++.++.-=|..
T Consensus 15 r~~v~~~Lp~lk~kyk~dfvI~N~------ENaa~G~Git~k~y~~l--------~~~G~dviT~GNH~wd~ 72 (266)
T COG1692 15 RKAVKEHLPQLKSKYKIDFVIVNG------ENAAGGFGITEKIYKEL--------LEAGADVITLGNHTWDQ 72 (266)
T ss_pred HHHHHHHhHHHHHhhcCcEEEEcC------ccccCCcCCCHHHHHHH--------HHhCCCEEecccccccc
Confidence 356777888888999999999865 44567788999888753 34477777777666653
No 221
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=20.77 E-value=3.5e+02 Score=24.12 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC---C--------HHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKI---S--------PDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l---t--------~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
-++.+..+++++. ..++.++++||| |++..+.- . ...+.++...|..+|+++++.++++
T Consensus 96 ~~~~~~~l~~~~~-~~~~~~~~lvVI---------Dsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 165 (226)
T cd01393 96 GEQQLEIVEELER-IMSSGRVDLVVV---------DSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFT 165 (226)
T ss_pred HHHHHHHHHHHHH-HhhcCCeeEEEE---------cCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Confidence 4556666666543 346778999887 44443210 0 1234555666888888888888765
Q ss_pred e
Q 018685 318 T 318 (352)
Q Consensus 318 l 318 (352)
-
T Consensus 166 n 166 (226)
T cd01393 166 N 166 (226)
T ss_pred E
Confidence 4
No 222
>PRK11670 antiporter inner membrane protein; Provisional
Probab=20.75 E-value=1.1e+02 Score=30.55 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=15.4
Q ss_pred HHcCCCeEEEEeccCcCCchhhhhh
Q 018685 186 VQLNISRVMIIDLDAHQGNGHEKDF 210 (352)
Q Consensus 186 ~~~~~~rV~IiD~DvHHGnGTq~if 210 (352)
.+.| +||++||.|....+ +..+|
T Consensus 133 A~~G-~rVlLID~D~qgps-~~~~l 155 (369)
T PRK11670 133 AAEG-AKVGILDADIYGPS-IPTML 155 (369)
T ss_pred HHCC-CcEEEEeCCCCCCC-cchhc
Confidence 3345 69999999996643 33344
No 223
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=20.64 E-value=1.7e+02 Score=29.54 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 252 YLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 252 yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
|...|.+.+ |-++.|+=+.+||=.|=.+..++-+ ..+.+.+..+ ...|.++|+|.+||+.
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~~----------~~~~~~i~~l-~~~g~~~vlVHGgg~~ 60 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGNL----------GNIVADIALL-HSLGVRLVLVHGARPQ 60 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCccH----------HHHHHHHHHH-HHCCCcEEEEcCCCHH
Confidence 456677775 5569999999999888665543211 1222333332 3457899999999974
No 224
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.58 E-value=4.4e+02 Score=24.05 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=36.3
Q ss_pred HHHHHhhcCCCEEEEEcCCC-CCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCC
Q 018685 260 LEVAGHTFDPELVIYNAGTD-ILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS 325 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D-~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~ 325 (352)
+..+++++.-++..++.-.+ ....|+... .+.+..+-+ ++++|.++|.+++++..|++...
T Consensus 50 l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~i~~a~~lg~~~vv~~~g~~~~~ 111 (274)
T COG1082 50 LKELLADYGLEITSLAPFSNNLLSPDEEER----EEALEELKR-AIELAKELGAKVVVVHPGLGAGA 111 (274)
T ss_pred HHHHHHHcCcEEEeecccCCCcCCCchhhH----HHHHHHHHH-HHHHHHHcCCCeEEeecccCCcC
Confidence 34455666766666555544 233333222 122333333 77888999999999888887643
No 225
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=20.46 E-value=2.8e+02 Score=25.65 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=29.8
Q ss_pred HHHHhhcCCCEEEEEcCCCC----CCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCC-EEE
Q 018685 261 EVAGHTFDPELVIYNAGTDI----LEGDPLGMLKISPDGIAARDEKTFRFARSRNIP-IVM 316 (352)
Q Consensus 261 ~p~~~~f~PdlIvvsaG~D~----~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~-~v~ 316 (352)
..+++.++||.||-.||.-. ...+|...+... ...+..|++.|++.+.+ +|.
T Consensus 42 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n----~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 42 EAFFAKEKPTYVILAAAKVGGIHANMTYPADFIREN----LQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred HHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHH----hHHHHHHHHHHHHcCCCeEEE
Confidence 33456679999999998632 223433211111 12355677888877764 444
No 226
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=20.37 E-value=8e+02 Score=25.61 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=53.3
Q ss_pred cccC-CCCCChH-HHHHHHHHHHHHHHhhcCC-----CEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--
Q 018685 240 KVEV-VSGTTTN-EYLKKLDEALEVAGHTFDP-----ELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSR-- 310 (352)
Q Consensus 240 NvPL-~~g~~d~-~yl~~~~~~l~p~~~~f~P-----dlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~-- 310 (352)
|||+ .+...++ +....+.+.+...++.|+. .+.+.-. |..+.+-+...++.+.+.+..++.
T Consensus 337 NiPVl~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Alal~----------g~~~~~f~~iq~lA~~i~~~~~~~~~ 406 (473)
T PF06277_consen 337 NIPVLKPSLEEEEESFEELAEAIREALEWFDLEGEDQPVALALP----------GKPNPSFAEIQELAEAIAEGMAELIN 406 (473)
T ss_pred CCcEEeeccchhhcchHHHHHHHHHHHHhhcccCCCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 7776 2222222 1225666666666666654 1222211 233566667777777777776653
Q ss_pred -CCCEEEEeCCCCCCChHHHHHHHHHHHhhc
Q 018685 311 -NIPIVMLTSGGYMKSSARVIANSVENLSRK 340 (352)
Q Consensus 311 -~~~~v~vleGGY~~~~~~~~~~~v~~l~~~ 340 (352)
+.|+++++|.= .++++-.++...+..
T Consensus 407 ~~~Plivv~e~D----~aKvLGq~l~~~l~~ 433 (473)
T PF06277_consen 407 PDQPLIVVVEQD----MAKVLGQTLQALLPK 433 (473)
T ss_pred CCCCEEEEECch----HHHHHHHHHHHhcCC
Confidence 56999999864 478899998888773
No 227
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=20.30 E-value=1.1e+02 Score=30.92 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCCCCCceeeCCCCCCHHH---HhccCChhHHHHhhc
Q 018685 59 SKWGRICQFLSSEGFLDKNCIVEPLEASKED---LLVVHSESYLKSLQS 104 (352)
Q Consensus 59 ~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~---l~~vHs~~Yi~~l~~ 104 (352)
+|+...++.+++..+.+.- ...++..+..| ++.| ++.+|++...
T Consensus 24 ~~~~~~~~~~~~~~~~p~~-~k~~r~ft~~e~A~~lgv-s~~tlr~~~~ 70 (405)
T PRK13869 24 EQLSSQLQAMSEALFPPTS-HKSLRKFTSGEAARLMKI-SDSTLRKMTL 70 (405)
T ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHhCc-CHHHHHHHHH
Confidence 4566666667766554432 23444555544 4445 7888888754
No 228
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.11 E-value=1.1e+03 Score=26.24 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCEEEEe-CCCCCCCh-------HHHHHHHHHHH
Q 018685 290 KISPDGIAARDEKTFRFARSRNIPIVMLT-SGGYMKSS-------ARVIANSVENL 337 (352)
Q Consensus 290 ~lt~~~y~~~~~~l~~~a~~~~~~~v~vl-eGGY~~~~-------~~~~~~~v~~l 337 (352)
.++++||.+..+ ++++|.++++|+|.+. .+|+.+.. ++.++.++.++
T Consensus 222 ~~~peGyRKAlR-lmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~am 276 (762)
T PLN03229 222 MPTPHGYRKALR-MMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 276 (762)
T ss_pred CCCHHHHHHHHH-HHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHH
Confidence 477999999886 7799999999988654 44554421 34455555544
Done!