Query 018685
Match_columns 352
No_of_seqs 204 out of 1450
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zz1_A Histone deacetylase-lik 100.0 1.2E-86 4.1E-91 653.5 32.0 302 33-342 1-333 (369)
2 2pqp_A HD7A, histone deacetyla 100.0 7.1E-85 2.4E-89 644.6 28.9 341 2-346 4-386 (421)
3 4a69_A Histone deacetylase 3,; 100.0 2E-84 7E-89 637.4 29.7 308 33-348 3-325 (376)
4 3max_A HD2, histone deacetylas 100.0 1.6E-83 5.3E-88 628.3 29.7 305 32-344 2-320 (367)
5 1c3p_A Protein (HDLP (histone 100.0 1.3E-83 4.3E-88 633.2 26.9 304 33-343 2-319 (375)
6 3ew8_A HD8, histone deacetylas 100.0 1.1E-82 3.9E-87 625.1 26.8 306 29-344 10-329 (388)
7 2vqm_A HD4, histone deacetylas 100.0 8.8E-82 3E-86 627.4 27.3 315 28-346 3-357 (413)
8 3q9b_A Acetylpolyamine amidohy 100.0 8.6E-81 2.9E-85 603.7 27.4 293 35-337 1-339 (341)
9 3men_A Acetylpolyamine aminohy 100.0 9.9E-81 3.4E-85 606.5 25.1 293 34-338 21-358 (362)
10 1ivn_A Thioesterase I; hydrola 86.9 3.6 0.00012 34.3 9.4 56 251-317 49-105 (190)
11 3hp4_A GDSL-esterase; psychrot 84.7 2.5 8.4E-05 35.0 7.2 60 247-317 49-109 (185)
12 4h08_A Putative hydrolase; GDS 80.7 5.2 0.00018 33.7 7.8 57 243-311 53-109 (200)
13 3p94_A GDSL-like lipase; serin 80.0 2.9 0.0001 35.0 5.9 70 240-318 51-121 (204)
14 3mil_A Isoamyl acetate-hydroly 79.9 7.1 0.00024 33.4 8.5 66 247-318 54-120 (240)
15 3bzw_A Putative lipase; protei 79.3 2.2 7.7E-05 38.4 5.2 37 251-289 73-110 (274)
16 2q0q_A ARYL esterase; SGNH hyd 76.8 5.4 0.00018 33.7 6.7 51 263-318 77-138 (216)
17 3rjt_A Lipolytic protein G-D-S 75.8 2.1 7.1E-05 36.1 3.7 54 264-317 79-136 (216)
18 4hf7_A Putative acylhydrolase; 73.8 6.1 0.00021 33.9 6.3 70 239-317 54-124 (209)
19 1es9_A PAF-AH, platelet-activa 72.5 5 0.00017 34.8 5.4 45 264-317 89-136 (232)
20 1vjg_A Putative lipase from th 70.8 4.6 0.00016 34.5 4.8 68 248-319 68-137 (218)
21 1yzf_A Lipase/acylhydrolase; s 70.1 18 0.0006 29.5 8.2 61 247-318 50-111 (195)
22 2o14_A Hypothetical protein YX 67.3 9.8 0.00034 36.3 6.7 53 260-317 221-275 (375)
23 3dci_A Arylesterase; SGNH_hydr 66.5 17 0.00057 31.4 7.6 51 263-318 95-154 (232)
24 1fxw_F Alpha2, platelet-activa 66.4 7.3 0.00025 33.7 5.2 45 264-317 90-137 (229)
25 4dzz_A Plasmid partitioning pr 62.4 26 0.00088 29.2 7.9 16 191-207 31-46 (206)
26 3dff_A Teicoplanin pseudoaglyc 58.3 10 0.00035 34.7 4.8 54 250-315 130-183 (273)
27 2xdq_A Light-independent proto 57.6 26 0.0009 34.2 7.9 72 256-340 85-157 (460)
28 3dfi_A Pseudoaglycone deacetyl 56.9 12 0.00041 34.2 4.9 55 250-316 127-181 (270)
29 3aek_B Light-independent proto 56.7 18 0.00062 36.3 6.7 71 255-340 72-143 (525)
30 3dc7_A Putative uncharacterize 55.9 7.8 0.00027 33.4 3.4 52 267-318 81-136 (232)
31 2q6t_A DNAB replication FORK h 54.3 25 0.00085 34.1 7.1 51 259-318 301-360 (444)
32 1mio_B Nitrogenase molybdenum 53.3 30 0.001 34.0 7.5 72 255-339 83-159 (458)
33 3bgw_A DNAB-like replicative h 50.7 35 0.0012 33.4 7.5 51 260-319 300-358 (444)
34 3bh0_A DNAB-like replicative h 50.5 22 0.00076 32.8 5.8 53 258-319 169-229 (315)
35 4a1f_A DNAB helicase, replicat 50.3 10 0.00035 36.1 3.4 55 255-318 142-203 (338)
36 1cp2_A CP2, nitrogenase iron p 49.8 15 0.00052 32.4 4.4 24 187-212 27-50 (269)
37 2hsj_A Putative platelet activ 49.3 14 0.00046 31.1 3.8 46 265-317 82-130 (214)
38 2xdq_B Light-independent proto 48.8 20 0.00068 35.8 5.4 68 258-338 78-146 (511)
39 3skv_A SSFX3; jelly roll, GDSL 48.5 19 0.00063 34.7 5.0 50 262-318 238-290 (385)
40 3pdi_B Nitrogenase MOFE cofact 47.9 28 0.00094 34.3 6.2 75 254-342 78-158 (458)
41 4fzw_C 1,2-epoxyphenylacetyl-C 47.1 79 0.0027 28.6 8.9 103 200-320 8-120 (274)
42 3pdi_A Nitrogenase MOFE cofact 47.0 17 0.00057 36.2 4.6 72 254-338 108-180 (483)
43 1k7c_A Rhamnogalacturonan acet 47.0 26 0.0009 30.4 5.4 57 261-317 55-131 (233)
44 3pg5_A Uncharacterized protein 46.7 16 0.00054 34.6 4.1 23 187-211 28-50 (361)
45 1g3q_A MIND ATPase, cell divis 46.7 16 0.00055 31.5 3.9 16 191-206 32-47 (237)
46 1q57_A DNA primase/helicase; d 46.5 35 0.0012 33.6 6.8 49 260-317 346-400 (503)
47 1hyq_A MIND, cell division inh 45.5 17 0.00058 32.0 4.0 16 191-206 32-47 (263)
48 2afh_E Nitrogenase iron protei 45.5 20 0.00069 32.2 4.5 20 191-211 31-50 (289)
49 1ii7_A MRE11 nuclease; RAD50, 45.1 91 0.0031 28.6 9.2 64 250-323 23-86 (333)
50 2q8u_A Exonuclease, putative; 45.1 71 0.0024 29.3 8.4 63 250-323 44-107 (336)
51 3q9l_A Septum site-determining 45.0 17 0.0006 31.7 3.9 17 191-207 32-48 (260)
52 3ea0_A ATPase, para family; al 44.8 21 0.00072 30.8 4.4 19 191-209 35-53 (245)
53 3mnf_A PAC2 family protein; PS 42.6 76 0.0026 28.5 7.9 150 178-339 23-207 (250)
54 1wcv_1 SOJ, segregation protei 41.5 21 0.0007 31.6 3.8 16 191-207 36-51 (257)
55 2r6a_A DNAB helicase, replicat 41.1 53 0.0018 31.9 7.1 52 259-319 304-362 (454)
56 3kjh_A CO dehydrogenase/acetyl 40.2 21 0.00071 30.7 3.6 19 186-206 25-43 (254)
57 2xj4_A MIPZ; replication, cell 38.8 24 0.00083 31.8 3.9 21 187-208 31-51 (286)
58 4h08_A Putative hydrolase; GDS 38.6 94 0.0032 25.6 7.5 95 248-343 90-199 (200)
59 3tho_B Exonuclease, putative; 38.5 98 0.0034 29.2 8.4 64 249-323 25-89 (379)
60 3jug_A Beta-mannanase; TIM-bar 38.3 88 0.003 29.4 7.9 68 251-325 117-187 (345)
61 2vpt_A Lipolytic enzyme; ester 37.5 41 0.0014 28.4 5.1 48 248-304 67-115 (215)
62 2buf_A Acetylglutamate kinase; 37.1 1.3E+02 0.0044 27.5 8.7 62 250-322 8-69 (300)
63 3u7q_A Nitrogenase molybdenum- 37.1 49 0.0017 32.9 6.2 72 255-339 130-204 (492)
64 3end_A Light-independent proto 36.5 30 0.001 31.3 4.2 21 187-209 67-87 (307)
65 2wao_A Endoglucanase E; plant 36.0 39 0.0013 31.3 5.0 48 265-318 210-260 (341)
66 3av0_A DNA double-strand break 35.6 92 0.0032 29.3 7.7 60 250-318 43-102 (386)
67 2waa_A Acetyl esterase, xylan 35.6 28 0.00094 32.6 3.9 47 265-317 222-271 (347)
68 3oc7_A Enoyl-COA hydratase; se 35.6 1.6E+02 0.0054 26.3 8.9 86 213-320 18-117 (267)
69 2ej5_A Enoyl-COA hydratase sub 35.2 1.9E+02 0.0064 25.6 9.3 70 247-320 26-103 (257)
70 3t1i_A Double-strand break rep 34.1 1.1E+02 0.0037 29.9 8.0 50 250-307 54-103 (431)
71 3la6_A Tyrosine-protein kinase 33.9 29 0.001 31.7 3.7 14 191-204 122-135 (286)
72 2oze_A ORF delta'; para, walke 33.8 31 0.0011 31.0 3.8 21 187-209 63-83 (298)
73 3l3s_A Enoyl-COA hydratase/iso 32.0 2.6E+02 0.009 24.8 9.8 75 246-320 28-113 (263)
74 3bfv_A CAPA1, CAPB2, membrane 31.6 38 0.0013 30.6 4.0 15 191-205 112-126 (271)
75 1qgu_B Protein (nitrogenase mo 31.6 55 0.0019 32.7 5.5 22 256-277 129-150 (519)
76 3aek_A Light-independent proto 31.3 55 0.0019 31.8 5.4 71 256-340 102-177 (437)
77 4ep4_A Crossover junction endo 30.8 2.4E+02 0.0082 23.7 10.8 89 244-340 39-135 (166)
78 3cio_A ETK, tyrosine-protein k 30.8 38 0.0013 31.0 3.9 16 191-206 134-149 (299)
79 1ivn_A Thioesterase I; hydrola 30.0 2.2E+02 0.0074 22.9 11.0 88 247-344 79-180 (190)
80 2ph1_A Nucleotide-binding prot 29.9 38 0.0013 29.9 3.7 15 191-205 48-62 (262)
81 1vhx_A Putative holliday junct 29.8 48 0.0016 27.5 4.0 55 259-322 46-101 (150)
82 3fkq_A NTRC-like two-domain pr 29.7 35 0.0012 32.2 3.6 19 191-211 173-191 (373)
83 2dr3_A UPF0273 protein PH0284; 29.7 82 0.0028 26.7 5.7 53 259-319 119-171 (247)
84 2w0m_A SSO2452; RECA, SSPF, un 29.2 65 0.0022 27.0 4.9 49 261-317 114-164 (235)
85 3d2m_A Putative acetylglutamat 29.1 64 0.0022 31.2 5.4 61 250-322 25-85 (456)
86 3hp4_A GDSL-esterase; psychrot 28.3 1.5E+02 0.005 23.7 6.9 65 242-309 112-180 (185)
87 2bty_A Acetylglutamate kinase; 27.9 1.1E+02 0.0037 27.6 6.5 62 250-322 3-64 (282)
88 3hrx_A Probable enoyl-COA hydr 27.8 2.7E+02 0.0091 24.5 9.0 71 247-320 23-100 (254)
89 3k9g_A PF-32 protein; ssgcid, 27.8 40 0.0014 29.6 3.4 18 191-209 56-73 (267)
90 3rcm_A TATD family hydrolase; 27.4 1.1E+02 0.0039 27.8 6.5 48 174-222 16-68 (287)
91 3ib7_A ICC protein; metallopho 26.3 1.5E+02 0.0053 26.3 7.2 60 253-322 50-110 (330)
92 2q02_A Putative cytoplasmic pr 26.2 2.2E+02 0.0075 24.4 8.1 67 262-337 58-125 (272)
93 3cwq_A Para family chromosome 25.9 48 0.0016 28.3 3.5 20 185-207 25-44 (209)
94 3fwy_A Light-independent proto 25.7 54 0.0018 30.4 4.0 21 185-207 72-92 (314)
95 3zq6_A Putative arsenical pump 25.5 52 0.0018 30.3 3.9 20 191-212 43-62 (324)
96 3ug7_A Arsenical pump-driving 25.4 96 0.0033 28.9 5.7 21 191-213 55-75 (349)
97 2cvh_A DNA repair and recombin 24.9 1.1E+02 0.0036 25.5 5.5 50 263-318 101-153 (220)
98 2ppy_A Enoyl-COA hydratase; be 24.7 1.4E+02 0.0046 26.7 6.4 79 238-320 23-110 (265)
99 3he2_A Enoyl-COA hydratase ECH 24.5 1.6E+02 0.0055 26.4 6.9 67 246-320 43-116 (264)
100 4gkb_A 3-oxoacyl-[acyl-carrier 24.2 95 0.0033 27.8 5.3 106 178-318 22-139 (258)
101 1mio_A Nitrogenase molybdenum 24.1 1.2E+02 0.0042 30.3 6.5 72 255-339 121-194 (533)
102 3ez2_A Plasmid partition prote 24.0 55 0.0019 30.9 3.8 14 191-205 144-157 (398)
103 2f6q_A Peroxisomal 3,2-trans-e 24.0 2.7E+02 0.0093 25.0 8.4 78 239-320 41-130 (280)
104 1qv9_A F420-dependent methylen 23.5 80 0.0027 28.7 4.4 57 247-320 44-100 (283)
105 3ced_A Methionine import ATP-b 23.4 14 0.00048 28.4 -0.5 57 257-314 34-92 (98)
106 3pea_A Enoyl-COA hydratase/iso 23.4 2.9E+02 0.01 24.4 8.4 73 247-320 28-107 (261)
107 2qsw_A Methionine import ATP-b 23.1 10 0.00034 29.2 -1.4 56 259-314 39-94 (100)
108 2whl_A Beta-mannanase, baman5; 23.1 2.5E+02 0.0084 24.9 7.9 67 251-324 94-163 (294)
109 2rd5_A Acetylglutamate kinase- 22.9 96 0.0033 28.3 5.1 63 249-322 17-79 (298)
110 1cr0_A DNA primase/helicase; R 22.9 1.2E+02 0.0042 26.9 5.8 49 262-317 141-193 (296)
111 2ap9_A NAG kinase, acetylgluta 22.8 2E+02 0.0069 26.0 7.3 64 248-322 5-68 (299)
112 3pzg_A Mannan endo-1,4-beta-ma 22.5 1.7E+02 0.0058 27.9 6.9 71 248-323 147-229 (383)
113 2q02_A Putative cytoplasmic pr 22.5 2.5E+02 0.0085 24.0 7.7 57 249-315 80-137 (272)
114 3r6h_A Enoyl-COA hydratase, EC 22.4 2.1E+02 0.0071 24.9 7.1 72 246-320 26-104 (233)
115 3gow_A PAAG, probable enoyl-CO 22.3 3.8E+02 0.013 23.5 9.0 71 247-320 23-100 (254)
116 2djk_A PDI, protein disulfide- 21.8 2.7E+02 0.0093 21.3 9.4 73 255-344 39-120 (133)
117 2ixd_A LMBE-related protein; h 21.7 79 0.0027 28.1 4.1 23 257-279 86-108 (242)
118 2j5g_A ALR4455 protein; enzyme 21.6 2.3E+02 0.0078 25.3 7.3 68 249-320 49-126 (263)
119 3ez9_A Para; DNA binding, wing 21.3 56 0.0019 31.0 3.2 15 191-206 147-161 (403)
120 2qrr_A Methionine import ATP-b 21.2 11 0.00039 28.9 -1.5 56 259-314 39-94 (101)
121 1uan_A Hypothetical protein TT 21.0 63 0.0022 28.4 3.3 24 257-280 84-107 (227)
122 3njd_A Enoyl-COA hydratase; ss 20.9 3.9E+02 0.013 24.6 9.0 74 201-274 6-85 (333)
123 3hn6_A Glucosamine-6-phosphate 20.9 1.1E+02 0.0039 28.0 5.1 41 240-283 124-166 (289)
124 3ged_A Short-chain dehydrogena 20.3 4.4E+02 0.015 23.1 10.5 104 178-319 17-133 (247)
125 2woo_A ATPase GET3; tail-ancho 20.2 68 0.0023 29.7 3.5 22 187-211 45-66 (329)
No 1
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=1.2e-86 Score=653.48 Aligned_cols=302 Identities=22% Similarity=0.333 Sum_probs=279.6
Q ss_pred CceeEEEccccCcccCCCCCC----------------CCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCCh
Q 018685 33 FKLPLIYSPDYDISFLGIEKL----------------HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96 (352)
Q Consensus 33 ~~~~viy~~~~~~~~~~~~~~----------------HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~ 96 (352)
|+|+++|||+|..|.++ .. |||+|+|++.+++.|++.|+++.+++++|++|+.++|++||++
T Consensus 1 m~t~~~y~~~~~~h~~~--~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~ 78 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTG--TGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSA 78 (369)
T ss_dssp -CEEEECCGGGGGCCCC--SSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCH
T ss_pred CeEEEEEchHHcccCCC--CcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccH
Confidence 67999999999998654 44 9999999999999999999998899999999999999999999
Q ss_pred hHHHHhhcCCCccccccCCCccccC-CccccccchHHHHHHhcHHHHHHHHHhh----hcccccccCCCCCCCCCCCCcc
Q 018685 97 SYLKSLQSSPNVSIIIEVPPVALFP-NCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGGF 171 (352)
Q Consensus 97 ~Yi~~l~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~a~~a~G~~l~aa~~~~~----~~~a~~~~~G~HHA~~~~a~GF 171 (352)
+||++|++.+... ....++. ||++++++++++++++|+++.|++++++ ++||++|||| |||++++++||
T Consensus 79 ~Yv~~l~~~~~~~-----~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~GF 152 (369)
T 1zz1_A 79 AHLENMKRVSNLP-----TGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGF 152 (369)
T ss_dssp HHHHHHHHHHHST-----TCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBTT
T ss_pred HHHHHHHHhCccc-----cceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCCc
Confidence 9999998765310 1123566 9999999999999999999999999987 4689999998 99999999999
Q ss_pred cccchHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCCCCC-CCccc-------CCcccccccC
Q 018685 172 CAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYP-RDYEA-------RRFIDQKVEV 243 (352)
Q Consensus 172 C~fNnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP-~~g~~-------~~~~~~NvPL 243 (352)
|+|||+||||++|++++|++||+|||||||||||||+|||+||+|+|+|+|+.++|| +||.. ++++++||||
T Consensus 153 C~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~~tG~~~e~G~g~g~g~~vNvPL 232 (369)
T 1zz1_A 153 CIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPL 232 (369)
T ss_dssp BSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSSTTCCCTTCCCCGGGTTCEEEEEE
T ss_pred hHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999999 88753 3569999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCCCC
Q 018685 244 VSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGGY 322 (352)
Q Consensus 244 ~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~-~~~~~v~vleGGY 322 (352)
|+|++|++|+.+|++++.|++++|+||+||||||||+|++||||+|+||+++|.++++.|+++|.+ +++|++++|||||
T Consensus 233 ~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY 312 (369)
T 1zz1_A 233 PPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGY 312 (369)
T ss_dssp CTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988 7999999999999
Q ss_pred CCC-hHHHHHHHHHHHhhcCC
Q 018685 323 MKS-SARVIANSVENLSRKGL 342 (352)
Q Consensus 323 ~~~-~~~~~~~~v~~l~~~~l 342 (352)
+.+ .+++|+..+.+|++...
T Consensus 313 ~~~~l~~~~~~~~~~l~g~~~ 333 (369)
T 1zz1_A 313 SPHYLPFCGLAVIEELTGVRS 333 (369)
T ss_dssp CTTTHHHHHHHHHHHHHCCCC
T ss_pred CccHHHHHHHHHHHHHhCCCC
Confidence 987 58999999999998776
No 2
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=7.1e-85 Score=644.64 Aligned_cols=341 Identities=22% Similarity=0.282 Sum_probs=272.7
Q ss_pred CCCCCCCCCCcHHHHhhhhccccccccccC-CCceeEEEccccCcccCC--CCCCCCCCchHHHHHHHHHHHcCCCCCce
Q 018685 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIP-IFKLPLIYSPDYDISFLG--IEKLHPFDSSKWGRICQFLSSEGFLDKNC 78 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~viy~~~~~~~~~~--~~~~HPe~p~R~~~i~~~L~~~gl~~~~~ 78 (352)
||.++|.+++..+...+...+++.--...| .|+|+++||++|+.|.+. .+..|||+|+|++.|+++|++.||++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~ 83 (421)
T 2pqp_A 4 SSPAAPASLSAPEPASQARVLSSSETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCE 83 (421)
T ss_dssp -----------------------------CCTTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSE
T ss_pred CCCCCccccCCCCCCccccccCCCCCCCCCCCCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCe
Confidence 444566777777877777777776555666 489999999999999754 44689999999999999999999999999
Q ss_pred eeCCCCCCHHHHhccCChhHHHHhhcCCCc-ccc----------cc----C--CCccccCCcccc-ccchHHHHHHhcHH
Q 018685 79 IVEPLEASKEDLLVVHSESYLKSLQSSPNV-SII----------IE----V--PPVALFPNCLVQ-RKVLYPFRKQVGGT 140 (352)
Q Consensus 79 ~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~-~~~----------~e----~--~~~~~~~~~~~~-~~~~~~a~~a~G~~ 140 (352)
+++|++|++++|++||+++||+.+...... .+. .. . ....+++|++++ +.++++|++++|++
T Consensus 84 ~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~ 163 (421)
T 2pqp_A 84 CLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSV 163 (421)
T ss_dssp EECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHhcCCHHHHHhhhcchhhhhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHH
Confidence 999999999999999999999865432100 000 00 0 112356788877 48999999999999
Q ss_pred HHHHHHHhh----hcccccccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcE
Q 018685 141 ILAAKLAKE----RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRV 216 (352)
Q Consensus 141 l~aa~~~~~----~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~V 216 (352)
+.|++.+++ ++||++|||| |||++++++|||+|||+||||++|+++++++||+|||||||||||||+|||+||+|
T Consensus 164 ~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~V 242 (421)
T 2pqp_A 164 TDLAFKVASRELKNGFAVVRPPG-HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSV 242 (421)
T ss_dssp HHHHHHHHTTSSSEEEECCSSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTE
T ss_pred HHHHHHHHcCccccceeeCCCCC-CCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCE
Confidence 999999874 5799999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC---CCCCCCccc-------CCcccccccCCC----CCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCC
Q 018685 217 YILDMFNP---GIYPRDYEA-------RRFIDQKVEVVS----GTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILE 282 (352)
Q Consensus 217 l~iSiH~~---~~yP~~g~~-------~~~~~~NvPL~~----g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~ 282 (352)
+|+|+|+. .|||+||.. ++++|+|||||. |++|++|+.+|+++|.|++++|+||+||||||||+|+
T Consensus 243 l~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~ 322 (421)
T 2pqp_A 243 LYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAE 322 (421)
T ss_dssp EEEEEEECGGGTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBT
T ss_pred EEEecccCCCCCCCCCCCChhhccCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccc
Confidence 99999995 599998753 356899999975 5799999999999999999999999999999999999
Q ss_pred CC--CCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHHHHHHHHhhcCCCCCC
Q 018685 283 GD--PLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIANSVENLSRKGLINMG 346 (352)
Q Consensus 283 ~D--plg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~~~v~~l~~~~l~~~~ 346 (352)
+| |||+|+||+++|.++++.|+++| ++|+|++|||||+.+. +++++.++++|++..+.++|
T Consensus 323 gD~dpLg~~~lt~~~y~~~~~~l~~~a---~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~ 386 (421)
T 2pqp_A 323 GHPAPLGGYHVSAKCFGYMTQQLMNLA---GGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLS 386 (421)
T ss_dssp TCCGGGCCCBBCHHHHHHHHHHHTTSG---GGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGG
T ss_pred ccccccCCceeCHHHHHHHHHHHHHHc---CCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCc
Confidence 87 99999999999999999987765 7899999999999764 88888999999987665443
No 3
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-84 Score=637.38 Aligned_cols=308 Identities=24% Similarity=0.379 Sum_probs=275.0
Q ss_pred CceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCcccc-
Q 018685 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII- 111 (352)
Q Consensus 33 ~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~~- 111 (352)
+++.++|||+|..|. ++.+|||+|+|++.++++|++.|+++.+++++|++|+.++|++||+++||++|++.+.....
T Consensus 3 ~~~~~~y~~~~~~~~--~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~ 80 (376)
T 4a69_A 3 KTVAYFYDPDVGNFH--YGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG 80 (376)
T ss_dssp CCEEEECCTTTTCCC--CCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGG
T ss_pred CeEEEEEChHHhCcC--CCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchh
Confidence 578999999999885 45789999999999999999999999999999999999999999999999999987653210
Q ss_pred --ccCCCccccCCccccccchHHHHHHhcHHHHHHHHHhhh--cccccccCCCCCCCCCCCCcccccchHHHHHHHHHHH
Q 018685 112 --IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQ 187 (352)
Q Consensus 112 --~e~~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~ 187 (352)
.+.....+++||++++++++++++++||++.|++.++++ ++|++++||+|||++++++|||+|||+||||++|+++
T Consensus 81 ~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~ 160 (376)
T 4a69_A 81 FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKY 160 (376)
T ss_dssp GHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTT
T ss_pred hhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHh
Confidence 000112356799999999999999999999999987764 4799999999999999999999999999999999876
Q ss_pred cCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCC--CCCCCccc-------CCcccccccCCCCCChHHHHHHHHH
Q 018685 188 LNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKKLDE 258 (352)
Q Consensus 188 ~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~--~yP~~g~~-------~~~~~~NvPL~~g~~d~~yl~~~~~ 258 (352)
.+||+|||||||||||||+|||+||+|+|+|+|+.+ |||+||.. ++++++|||||+|++|++|+.+|++
T Consensus 161 --~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~ 238 (376)
T 4a69_A 161 --HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQP 238 (376)
T ss_dssp --CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHH
T ss_pred --CCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999965 89999752 3468999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHHHHHHHH
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIANSVENL 337 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~~~v~~l 337 (352)
+|.|++++|+||+||+|||||+|++||||.|+||++||.++++.+ +++++|+++++||||+..+ +++|+..+..+
T Consensus 239 ~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l----~~~~~p~v~v~eGGY~~~~var~w~~~~a~l 314 (376)
T 4a69_A 239 VINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYV----KSFNIPLLVLGGGGYTVRNVARCWTYETSLL 314 (376)
T ss_dssp HHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHH----HTTCCCEEEECCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHH----HHcCCCEEEEECCCCChhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987765 5568999999999999754 99999999999
Q ss_pred hhcCCCCCCCC
Q 018685 338 SRKGLINMGRS 348 (352)
Q Consensus 338 ~~~~l~~~~~~ 348 (352)
++..+....|.
T Consensus 315 ~g~~~~~~~P~ 325 (376)
T 4a69_A 315 VEEAISEELPY 325 (376)
T ss_dssp TTCCCCSBCCC
T ss_pred cCCCccCCCCC
Confidence 99887754433
No 4
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.6e-83 Score=628.33 Aligned_cols=305 Identities=25% Similarity=0.401 Sum_probs=273.9
Q ss_pred CCceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCcccc
Q 018685 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (352)
Q Consensus 32 ~~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~~ 111 (352)
..++.++|||+|..|..+ .+|||+|+|+++++++|++.||++.+++++|++|+.++|++||+++||++|++.+.....
T Consensus 2 ~~~v~~~y~~~~~~~~~g--~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYYG--QGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMS 79 (367)
T ss_dssp CCCEEEECCGGGGGCCCC--TTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGG
T ss_pred CCeEEEEECccccCcCCC--CCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccc
Confidence 357899999999998644 689999999999999999999999999999999999999999999999999987653210
Q ss_pred ---ccCCCccccCCccccccchHHHHHHhcHHHHHHHHHhh--hcccccccCCCCCCCCCCCCcccccchHHHHHHHHHH
Q 018685 112 ---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFV 186 (352)
Q Consensus 112 ---~e~~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~--~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~ 186 (352)
.+.....+++||++++++++++++++||++.|++.+.+ .++|++|+||+|||++++++|||+|||+||||++|++
T Consensus 80 ~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~ 159 (367)
T 3max_A 80 EYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK 159 (367)
T ss_dssp GCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTT
T ss_pred hhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHH
Confidence 00001235689999999999999999999999998864 4689999999999999999999999999999999987
Q ss_pred HcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCC-CCCCCccc-------CCcccccccCCCCCChHHHHHHHHH
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKKLDE 258 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~-~yP~~g~~-------~~~~~~NvPL~~g~~d~~yl~~~~~ 258 (352)
+ .+||+|||||||||||||+|||+||+|+|+|+|+.+ |||+||.. ++++++|||||+|++|++|+.+|++
T Consensus 160 ~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~ 237 (367)
T 3max_A 160 Y--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKP 237 (367)
T ss_dssp T--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred c--CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 5 489999999999999999999999999999999976 99998752 3468999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHHHHHHHH
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIANSVENL 337 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~~~v~~l 337 (352)
+|.|++++|+||+||||||||+|.+||||.|+||++||.++++.+ +++++|+++++||||+..+ +++|+..+..+
T Consensus 238 ~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~----~~~~~p~v~~~eGGY~~~~var~wt~~ta~~ 313 (367)
T 3max_A 238 IISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVV----KTFNLPLLMLGGGGYTIRNVARCWTYETAVA 313 (367)
T ss_dssp HHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHH----HTTCCCEEEECCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHH----HhcCCCEEEEeCCCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999977665 5579999999999999754 99999999999
Q ss_pred hhcCCCC
Q 018685 338 SRKGLIN 344 (352)
Q Consensus 338 ~~~~l~~ 344 (352)
++..+.+
T Consensus 314 ~~~~i~~ 320 (367)
T 3max_A 314 LDCEIPN 320 (367)
T ss_dssp TTCCCCS
T ss_pred hhccccc
Confidence 9988764
No 5
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=1.3e-83 Score=633.25 Aligned_cols=304 Identities=24% Similarity=0.330 Sum_probs=272.5
Q ss_pred CceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCccc--
Q 018685 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI-- 110 (352)
Q Consensus 33 ~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~-- 110 (352)
++++++|||+|..|. ++..|||+|+|++.++++|++.|+++.+++++|++|+.++|++||+++||++|++.+....
T Consensus 2 ~~t~~vy~~~~~~h~--~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~ 79 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYR--YPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP 79 (375)
T ss_dssp CCEEEEECGGGGGSC--CCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC
T ss_pred ceEEEEECHHHcCCC--CCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCC
Confidence 358999999999885 4478999999999999999999999989999999999999999999999999987543210
Q ss_pred cccCCCccc-cCCccccccchHHHHHHhcHHHHHHHHHhhhcccccccCCCCCCCCCCCCcccccchHHHHHHHHHHHcC
Q 018685 111 IIEVPPVAL-FPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN 189 (352)
Q Consensus 111 ~~e~~~~~~-~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~ 189 (352)
..+.....+ ++||++++++++++++++||++.|++++++++.+++++||+|||++++++|||+|||+||||++|+++ +
T Consensus 80 ~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g 158 (375)
T 1c3p_A 80 KGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-G 158 (375)
T ss_dssp TTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-T
T ss_pred hHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCCceeecCcccceeeeccCCCceeecHHHHHHHHHHHh-C
Confidence 000001123 68999999999999999999999999999888888888888999999999999999999999999876 6
Q ss_pred CCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCC--CCCCCccc--------CCcccccccCCCCCChHHHHHHHHHH
Q 018685 190 ISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEA--------RRFIDQKVEVVSGTTTNEYLKKLDEA 259 (352)
Q Consensus 190 ~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~--~yP~~g~~--------~~~~~~NvPL~~g~~d~~yl~~~~~~ 259 (352)
.+||+|||||||||||||+|||+||+|+|+|+|+.+ |||+||.. ++++++|||||+|++|++|+.+|+++
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~ 238 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKS 238 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 699999999999999999999999999999999976 67998732 23689999999999999999999999
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCC-hHHHHHHHHHHHh
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS-SARVIANSVENLS 338 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~-~~~~~~~~v~~l~ 338 (352)
|.|++++|+||+||||||||+|++||||.|+||+++|.++++.+++++ .|++++|||||+.. .+++|+..+..|+
T Consensus 239 l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a----~~vv~vleGGY~~~~l~~~~~~~~~~l~ 314 (375)
T 1c3p_A 239 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVF----GEGVYLGGGGYHPYALARAWTLIWCELS 314 (375)
T ss_dssp HHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHH----CSCEEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhc----cceEEEECCCCChHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999887 36999999999975 4899999999999
Q ss_pred hcCCC
Q 018685 339 RKGLI 343 (352)
Q Consensus 339 ~~~l~ 343 (352)
+..+.
T Consensus 315 g~~~~ 319 (375)
T 1c3p_A 315 GREVP 319 (375)
T ss_dssp TCCCC
T ss_pred CCCCC
Confidence 97765
No 6
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=1.1e-82 Score=625.14 Aligned_cols=306 Identities=25% Similarity=0.373 Sum_probs=270.9
Q ss_pred ccCCCceeEEEccccCcccCCCCCCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCc
Q 018685 29 DIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (352)
Q Consensus 29 ~~~~~~~~viy~~~~~~~~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~ 108 (352)
..+..++.++|||+|+.|. .+|||+|+|+++++++|++.|+++.+++++|++|+.++|++||+++||++|++.+..
T Consensus 10 ~~~~~~~~~~y~~~~~~~~----~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~ 85 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSMC----DSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQE 85 (388)
T ss_dssp ----CCCEEECCHHHHHHH----TTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEChHHhccC----CCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccc
Confidence 4456689999999999873 479999999999999999999999999999999999999999999999999875432
Q ss_pred ccc--ccCCCccccCCccccccchHHHHHHhcHHHHHHHHHhhh--cccccccCCCCCCCCCCCCcccccchHHHHHHHH
Q 018685 109 SII--IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (352)
Q Consensus 109 ~~~--~e~~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l 184 (352)
... .+.....+..||++++++++++++++||++.|+++++++ ++|++++||+|||++++++|||+|||+||||++|
T Consensus 86 ~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l 165 (388)
T 3ew8_A 86 GDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL 165 (388)
T ss_dssp C--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHH
T ss_pred ccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHH
Confidence 110 011112345689999999999999999999999999874 5899999988999999999999999999999999
Q ss_pred HHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCC--CCCCCCccc-------CCcccccccCCCCCChHHHHHH
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKK 255 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~~g~~-------~~~~~~NvPL~~g~~d~~yl~~ 255 (352)
+++ .+||+|||||||||||||+|||+||+|+|+|+|+. +|||+||.. ++++++|||||+|++|++|+.+
T Consensus 166 ~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~ 243 (388)
T 3ew8_A 166 RRK--FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243 (388)
T ss_dssp TTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHH
T ss_pred Hhc--CCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHH
Confidence 864 68999999999999999999999999999999985 599998752 3568999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCC-hHHHHHHHH
Q 018685 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKS-SARVIANSV 334 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~-~~~~~~~~v 334 (352)
|+++|.|++++|+||+||||||||+|++||||.|+||++||.++++.|+ ++++|+++++||||+.. .+++|+..+
T Consensus 244 ~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~----~~~~p~l~~~gGGY~~~~var~w~~~~ 319 (388)
T 3ew8_A 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL----QWQLATLILGGGGYNLANTARCWTYLT 319 (388)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHH----TTCCEEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHH----hcCCCEEEEECCCCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988875 45799999999999975 499999999
Q ss_pred HHHhhcCCCC
Q 018685 335 ENLSRKGLIN 344 (352)
Q Consensus 335 ~~l~~~~l~~ 344 (352)
..+++..+.+
T Consensus 320 ~~l~g~~l~~ 329 (388)
T 3ew8_A 320 GVILGKTLSS 329 (388)
T ss_dssp HHHHTCCCCS
T ss_pred HHHcCCCCCC
Confidence 9999988765
No 7
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=8.8e-82 Score=627.42 Aligned_cols=315 Identities=21% Similarity=0.294 Sum_probs=269.8
Q ss_pred cccCCCceeEEEccccCcccCCCC--CCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcC
Q 018685 28 FDIPIFKLPLIYSPDYDISFLGIE--KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSS 105 (352)
Q Consensus 28 ~~~~~~~~~viy~~~~~~~~~~~~--~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~ 105 (352)
+..|.|+|+++||++|+.|.+++. ..|||+|+|++.|+++|++.||++.+++++|++|+.++|++||+++||+.++..
T Consensus 3 m~~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~ 82 (413)
T 2vqm_A 3 MTKPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTN 82 (413)
T ss_dssp ---CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSC
T ss_pred CCCCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcC
Confidence 356889999999999999976543 569999999999999999999999999999999999999999999999988764
Q ss_pred CCccccc----------------cCCCccccCCccccc-cchHHHHHHhcHHHHHHHHHhh----hcccccccCCCCCCC
Q 018685 106 PNVSIII----------------EVPPVALFPNCLVQR-KVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCS 164 (352)
Q Consensus 106 ~~~~~~~----------------e~~~~~~~~~~~~~~-~~~~~a~~a~G~~l~aa~~~~~----~~~a~~~~~G~HHA~ 164 (352)
....... ..+...++.|+++++ .++++|++++|+++.|++.++. ++||+++||| |||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~ 161 (413)
T 2vqm_A 83 PLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAE 161 (413)
T ss_dssp GGGGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCB
T ss_pred chhhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCc
Confidence 3221100 011223456666554 6899999999999999999875 4688999887 9999
Q ss_pred CCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCC---CCCCCCccc-------C
Q 018685 165 ADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP---GIYPRDYEA-------R 234 (352)
Q Consensus 165 ~~~a~GFC~fNnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~---~~yP~~g~~-------~ 234 (352)
+++++|||+|||+||||++++++++++||+|||||||||||||+|||+|++|+|+|+|+. +|||+||.. +
T Consensus 162 ~~~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g 241 (413)
T 2vqm_A 162 ESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPG 241 (413)
T ss_dssp TTBCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGG
T ss_pred CCCCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999985 599999752 4
Q ss_pred CcccccccCC----CCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCC--CCCCCCcCCHHHHHHHHHHHHHHHh
Q 018685 235 RFIDQKVEVV----SGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEG--DPLGMLKISPDGIAARDEKTFRFAR 308 (352)
Q Consensus 235 ~~~~~NvPL~----~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~--Dplg~~~lt~~~y~~~~~~l~~~a~ 308 (352)
.++|+|+||+ ++++|++|+.+|+++|.|++++|+||+||||||||+|++ ||||+|+||+++|.+++++|+++|
T Consensus 242 ~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a- 320 (413)
T 2vqm_A 242 VGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLA- 320 (413)
T ss_dssp TTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSG-
T ss_pred cccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhc-
Confidence 5689999987 568999999999999999999999999999999999998 669999999999999999998776
Q ss_pred hCCCCEEEEeCCCCCCCh-HHHHHHHHHHHhhcCCCCCC
Q 018685 309 SRNIPIVMLTSGGYMKSS-ARVIANSVENLSRKGLINMG 346 (352)
Q Consensus 309 ~~~~~~v~vleGGY~~~~-~~~~~~~v~~l~~~~l~~~~ 346 (352)
++|+|++|||||+.++ +++++.++.+|++..+.++|
T Consensus 321 --~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p 357 (413)
T 2vqm_A 321 --GGRIVLALEGGHDLTAICDASEACVSALLGNELDPLP 357 (413)
T ss_dssp --GGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred --CCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCC
Confidence 6899999999999754 88999999999987765544
No 8
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=8.6e-81 Score=603.72 Aligned_cols=293 Identities=19% Similarity=0.280 Sum_probs=253.8
Q ss_pred eeEEEccccCcccCCCC------CCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCCc
Q 018685 35 LPLIYSPDYDISFLGIE------KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (352)
Q Consensus 35 ~~viy~~~~~~~~~~~~------~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~~ 108 (352)
+.++|||+|+.|..+.+ ..|||+|+|+++|+++|++.|+. ++++|++|++++|++||+++||++|++.+..
T Consensus 1 m~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~ 77 (341)
T 3q9b_A 1 MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDR 77 (341)
T ss_dssp CEEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHH
T ss_pred CEEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 35899999999965431 25999999999999999999985 5789999999999999999999999875321
Q ss_pred c-----c---cccC------------------CCccccCCccccccchHHHHHHhcHHHHHHHHHhh---hcccccccCC
Q 018685 109 S-----I---IIEV------------------PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGWAINVGGG 159 (352)
Q Consensus 109 ~-----~---~~e~------------------~~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~---~~~a~~~~~G 159 (352)
. . ..+. +...+++||++++++|++|++++|+++.|++.+++ ++||++||||
T Consensus 78 ~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG 157 (341)
T 3q9b_A 78 WKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG 157 (341)
T ss_dssp HHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC
T ss_pred hhhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC
Confidence 0 0 0000 00235789999999999999999999999999986 4689999988
Q ss_pred CCCCCCCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCC--CCCCC-Cccc---
Q 018685 160 FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPR-DYEA--- 233 (352)
Q Consensus 160 ~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~-~g~~--- 233 (352)
|||++++++|||+|||+||||++|+++ |++||+|||||||||||||+|||+||+|+|+|+|+. .+||+ ||..
T Consensus 158 -HHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~ 235 (341)
T 3q9b_A 158 -HHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEET 235 (341)
T ss_dssp -TTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCC
T ss_pred -CCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCccccc
Confidence 999999999999999999999999985 699999999999999999999999999999999997 49998 6532
Q ss_pred ----CCcccccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh
Q 018685 234 ----RRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARS 309 (352)
Q Consensus 234 ----~~~~~~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~ 309 (352)
++++++|||||+|++|++|+.+|++++ |.+++|+||+||||||||+|++||||.|+||+++|.++++.++ +
T Consensus 236 G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~----~ 310 (341)
T 3q9b_A 236 GKGAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIA----A 310 (341)
T ss_dssp CCGGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHH----T
T ss_pred CCCCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHH----H
Confidence 356899999999999999999999976 5679999999999999999999999999999999999888774 4
Q ss_pred CCCCEEEEeCCCCCCCh-HHHHHHHHHHH
Q 018685 310 RNIPIVMLTSGGYMKSS-ARVIANSVENL 337 (352)
Q Consensus 310 ~~~~~v~vleGGY~~~~-~~~~~~~v~~l 337 (352)
+++|++++|||||+.++ ++++.+.+..|
T Consensus 311 ~~~~~v~vleGGY~~~~l~~~~~~~l~g~ 339 (341)
T 3q9b_A 311 SGVPLLVVMEGGYGVPEIGLNVANVLKGV 339 (341)
T ss_dssp TSSCEEEEECCCCCCTTHHHHHHHHHHHH
T ss_pred hCCCEEEEECCCCChHHHHHHHHHHHHHh
Confidence 57899999999999874 55555555554
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=9.9e-81 Score=606.52 Aligned_cols=293 Identities=19% Similarity=0.307 Sum_probs=253.0
Q ss_pred ceeEEEccccCcccCCCC------CCCCCCchHHHHHHHHHHHcCCCCCceeeCCCCCCHHHHhccCChhHHHHhhcCCC
Q 018685 34 KLPLIYSPDYDISFLGIE------KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN 107 (352)
Q Consensus 34 ~~~viy~~~~~~~~~~~~------~~HPe~p~R~~~i~~~L~~~gl~~~~~~i~p~~a~~e~l~~vHs~~Yi~~l~~~~~ 107 (352)
.+.++|||+|+.|..+.. ..|||+|+|+++|+++|++.|+ ++++|++|+.++|++||+++||++|++.+.
T Consensus 21 ~M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~ 96 (362)
T 3men_A 21 SMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHR 96 (362)
T ss_dssp CCEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHH
T ss_pred ceEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhh
Confidence 356999999999975431 3699999999999999999997 688999999999999999999999987542
Q ss_pred ccc------ccc-CC------------------CccccCCccccccchHHHHHHhcHHHHHHHHHhh---hcccccccCC
Q 018685 108 VSI------IIE-VP------------------PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGWAINVGGG 159 (352)
Q Consensus 108 ~~~------~~e-~~------------------~~~~~~~~~~~~~~~~~a~~a~G~~l~aa~~~~~---~~~a~~~~~G 159 (352)
... ..| .+ ...+++||++++++|++|++++|+++.|++.+++ ++||++||||
T Consensus 97 ~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG 176 (362)
T 3men_A 97 EWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG 176 (362)
T ss_dssp HHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC
T ss_pred hhhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Confidence 100 000 00 0135789999999999999999999999999985 4699999987
Q ss_pred CCCCCCCCCCcccccchHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCC--CCCCC-Cccc---
Q 018685 160 FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPR-DYEA--- 233 (352)
Q Consensus 160 ~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~-~g~~--- 233 (352)
|||++++++|||+|||+||||++|+++ .+||+|||||||||||||+|||+||+|+|+|+|+. .+||+ ||..
T Consensus 177 -HHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~ 253 (362)
T 3men_A 177 -HHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDER 253 (362)
T ss_dssp -TTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCC
T ss_pred -CCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccc
Confidence 999999999999999999999999987 58999999999999999999999999999999996 49998 6532
Q ss_pred ----CCcccccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh
Q 018685 234 ----RRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARS 309 (352)
Q Consensus 234 ----~~~~~~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~ 309 (352)
++++++|||||+|++|++|+.+|++++ |++++|+||+||||||||+|++||||.|+||+++|.++++.++ +
T Consensus 254 G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~----~ 328 (362)
T 3men_A 254 GAGEGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIG----A 328 (362)
T ss_dssp CSGGGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHH----T
T ss_pred cCCCCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHH----h
Confidence 356899999999999999999999976 5679999999999999999999999999999999999887764 4
Q ss_pred CCCCEEEEeCCCCCCCh-HHHHHHHHHHHh
Q 018685 310 RNIPIVMLTSGGYMKSS-ARVIANSVENLS 338 (352)
Q Consensus 310 ~~~~~v~vleGGY~~~~-~~~~~~~v~~l~ 338 (352)
+++|++++|||||+.++ ++++.+.+++|.
T Consensus 329 ~~~~~v~vleGGY~~~~l~~~~~a~l~~l~ 358 (362)
T 3men_A 329 LRLPTVIVQEGGYHIESLEANARSFFGGFG 358 (362)
T ss_dssp TCCCEEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred hCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999753 555555555554
No 10
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=86.88 E-value=3.6 Score=34.33 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+.+..+++ .+..++||+||+..|. |... ..+.+.|....+.+++.+++.+.+++++
T Consensus 49 ~~~~~~~~----~~~~~~pd~Vii~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 49 QGLARLPA----LLKQHQPRWVLVELGGNDGLR-------GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHHH----HHHHHCCSEEEEECCTTTTSS-------SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHH----HHHhcCCCEEEEEeecccccc-------CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 44444443 3455789999999997 4432 3567777777777777777766666555
No 11
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=84.74 E-value=2.5 Score=35.04 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
.+-.+.+..+++ .+..++||+|++..|. |... ..+.+.|...-+.+.+.+++.+.+++++
T Consensus 49 ~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 49 ETSGGALRRLDA----LLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp CCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccHHHHHHHHHH----HHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 334455555544 3455799999999997 5533 3567788877777777777777666655
No 12
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=80.73 E-value=5.2 Score=33.71 Aligned_cols=57 Identities=9% Similarity=0.119 Sum_probs=38.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC
Q 018685 243 VVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRN 311 (352)
Q Consensus 243 L~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~ 311 (352)
...+++....++.+++. +...+||+|++..|.- | +..+.+.|.+--+.+.+.+++.+
T Consensus 53 ~~~~~~~~~~~~~~~~~----~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 53 NSKSVGDPALIEELAVV----LKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp ESCCTTCHHHHHHHHHH----HHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCccHHHHHHHHHHH----HhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhC
Confidence 33455556666655543 4568999999999973 2 34678888877777777666654
No 13
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=79.95 E-value=2.9 Score=35.02 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=43.7
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 240 KVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 240 NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
|..+. |.+-.+++..+++ .+..++||+|++..|. |...... ..+.+.|..-.+.+++.+++.+.+++++.
T Consensus 51 n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 51 DRGIS-GQTTSEMLVRFRQ----DVINLKPKAVVILAGINDIAHNNG----VIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp EEECT-TCCHHHHHHHHHH----HTGGGCEEEEEEECCHHHHTTTTS----CCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EcccC-cccHHHHHHHHHH----HHHhCCCCEEEEEeecCccccccC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44443 3334445544433 3355799999999998 6554321 25678887776777777777666766653
No 14
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=79.91 E-value=7.1 Score=33.43 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.+-...+..+++.+. ...+||+|+|..|. |..... .-..+.+.|....+.+++.+++.+.+++++.
T Consensus 54 ~~~~~~~~~~~~~~~---~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 120 (240)
T 3mil_A 54 YTSRWALKILPEILK---HESNIVMATIFLGANDACSAG---PQSVPLPEFIDNIRQMVSLMKSYHIRPIIIG 120 (240)
T ss_dssp CCHHHHHHHHHHHHH---HCCCEEEEEEECCTTTTSSSS---TTCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccHHHHHHHHHHHhc---ccCCCCEEEEEeecCcCCccC---CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 334455555554332 12699999999998 654321 2346788888777777777777776666654
No 15
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=79.32 E-value=2.2 Score=38.36 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCC
Q 018685 251 EYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGML 289 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~ 289 (352)
+.+..+++++.. ...+||+|+|..|. |.....|++.+
T Consensus 73 ~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 73 DVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp GHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 355556553321 23789999999999 88777777654
No 16
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=76.80 E-value=5.4 Score=33.72 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHhhcCC-CEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC---------CCEEEEe
Q 018685 263 AGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN---------IPIVMLT 318 (352)
Q Consensus 263 ~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~---------~~~v~vl 318 (352)
.+..++| |+|++..|. |... ....+.+.|..--+.+++.+++.+ .+++++.
T Consensus 77 ~l~~~~p~d~vvi~~G~ND~~~-----~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 77 CLATHLPLDLVIIMLGTNDTKA-----YFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHCSCSEEEEECCTGGGSG-----GGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHhCCCCCEEEEEecCcccch-----hcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 3456788 999999998 5432 234678888877777777777766 5666664
No 17
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=75.78 E-value=2.1 Score=36.12 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=37.1
Q ss_pred HhhcCCCEEEEEcCC-CCCCCCCCC---CCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 264 GHTFDPELVIYNAGT-DILEGDPLG---MLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 264 ~~~f~PdlIvvsaG~-D~~~~Dplg---~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+...+||+|++..|. |.....+.+ ....+.+.|....+.+++.+++.+.+++++
T Consensus 79 ~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~ 136 (216)
T 3rjt_A 79 VMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLL 136 (216)
T ss_dssp TGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEE
T ss_pred HhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 356799999999997 554322111 125668888887777888877777676666
No 18
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=73.76 E-value=6.1 Score=33.85 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=39.9
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 239 QKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 239 ~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+|..+. |.+-.+.+..|++.+ ..++||+||+..|. |...+.+. .+.+.+..-.+.+.+.++..+.+++++
T Consensus 54 iN~Gi~-G~tt~~~l~r~~~~v----~~~~Pd~vvi~~G~ND~~~~~~~----~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 54 IGRGIS-GQTSYQFLLRFREDV----INLSPALVVINAGTNDVAENTGA----YNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp EEEECT-TCCHHHHHHHHHHHT----GGGCCSEEEECCCHHHHTTSSSS----CCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEeccC-cccHHHHHHHHHHHH----HhcCCCEEEEEeCCCcCcccccc----ccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 344443 333345555555432 45799999999998 76544332 234545444444556666667776654
No 19
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=72.47 E-value=5 Score=34.79 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=28.4
Q ss_pred HhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 018685 264 GHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (352)
Q Consensus 264 ~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~v 317 (352)
+...+||+|||..|. |.. .+.+.|....+.+++.+++. +.+++++
T Consensus 89 l~~~~pd~vvi~~G~ND~~---------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~ 136 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG---------HTAEQVTGGIKAIVQLVNERQPQARVVVL 136 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT---------SCHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cccCCCCEEEEEeecCCCC---------CCHHHHHHHHHHHHHHHHHHCCCCeEEEe
Confidence 345789999999997 432 46666666555555555553 4455544
No 20
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=70.84 E-value=4.6 Score=34.50 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCC-CCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 248 TTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DIL-EGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 248 ~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~-~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
+-.+.+..++.-+...+...+||+|+|+.|. |.. ..+ ....+.+.|..-.+.+++.+++. .+++++.-
T Consensus 68 t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~~l~~li~~l~~~-~~iil~~~ 137 (218)
T 1vjg_A 68 TSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENG---KPRVSIAETIKNTREILTQAKKL-YPVLMISP 137 (218)
T ss_dssp CHHHHHHHHHHHHHTTCCTTSEEEEEEECCHHHHCEETT---EESSCHHHHHHHHHHHHHHHHHH-SCEEEECC
T ss_pred CHHHHHHHhHHhhhhhhccCCCCEEEEEecCCcchhhcc---cccCCHHHHHHHHHHHHHHHHHh-CcEEEECC
Confidence 3445555554322211123599999999998 544 111 22456777776666666666555 67776643
No 21
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=70.07 E-value=18 Score=29.54 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.+-.+++..+++ .+...+||+||++.|. |.. .....+.+.|...-+.+++.++ +.+++++.
T Consensus 50 ~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~-----~~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 50 DTTEDGLKRLNK----EVLIEKPDEVVIFFGANDAS-----LDRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp CCHHHHHHHHHH----HTGGGCCSEEEEECCTTTTC-----TTSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred CCHHHHHHHHHH----hhhhcCCCEEEEEeeccccC-----ccCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 334445544443 3355899999999997 443 1235677777765555555554 55665553
No 22
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=67.27 E-value=9.8 Score=36.34 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHhhcCC-CEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 260 LEVAGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 260 l~p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+..++.+++| |+|||+.|. |...+ ...+.+.|..--+.+++.+++.+.+++++
T Consensus 221 l~~~l~~~~p~d~VvI~~G~ND~~~~-----~~~~~~~~~~~l~~ii~~lr~~~a~vilv 275 (375)
T 2o14_A 221 LEAILKYIKPGDYFMLQLGINDTNPK-----HKESEAEFKEVMRDMIRQVKAKGADVILS 275 (375)
T ss_dssp HHHHHTTCCTTCEEEEECCTGGGCGG-----GCCCHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhCCCCCEEEEEEEccCCCcc-----CCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3455677899 999999998 55432 23567788777777777777776666654
No 23
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=66.49 E-value=17 Score=31.42 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=34.7
Q ss_pred HHhhcCC-CEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC-------CCCEEEEe
Q 018685 263 AGHTFDP-ELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR-------NIPIVMLT 318 (352)
Q Consensus 263 ~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~-------~~~~v~vl 318 (352)
.+..++| |+|||..|. |... ....+.+.|..--+.+++.+++. +.+++++.
T Consensus 95 ~l~~~~p~d~VvI~~GtND~~~-----~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~ 154 (232)
T 3dci_A 95 ALSCHMPLDLVIIMLGTNDIKP-----VHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVA 154 (232)
T ss_dssp HHHHHCSCSEEEEECCTTTTSG-----GGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEE
T ss_pred HHhhCCCCCEEEEEeccCCCcc-----ccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEe
Confidence 4456799 999999997 4332 33457888887777777777764 34555553
No 24
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=66.42 E-value=7.3 Score=33.72 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=29.7
Q ss_pred HhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 018685 264 GHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (352)
Q Consensus 264 ~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~v 317 (352)
+..++||+|+|..|. |. | .+.+.|..-.+.+++.+++. +.+++++
T Consensus 90 l~~~~pd~vvi~~G~ND~------~---~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 90 LENIKPKVIVVWVGTNNH------E---NTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp TSSCCCSEEEEECCTTCT------T---SCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccCCCCEEEEEEecCCC------C---CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 346799999999997 54 2 56777776555566665554 4455554
No 25
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=62.42 E-value=26 Score=29.24 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=11.3
Q ss_pred CeEEEEeccCcCCchhh
Q 018685 191 SRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq 207 (352)
+||++||+|. +++-+.
T Consensus 31 ~~vlliD~D~-~~~~~~ 46 (206)
T 4dzz_A 31 YNIAVVDTDP-QMSLTN 46 (206)
T ss_dssp CCEEEEECCT-TCHHHH
T ss_pred CeEEEEECCC-CCCHHH
Confidence 6999999993 344433
No 26
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=58.32 E-value=10 Score=34.69 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEE
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v 315 (352)
..+...+.+.|..++++++||+||.-.|.|.|-+ .....+.+.+.++..+.|++
T Consensus 130 ~~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpD------------H~~~~~a~~~A~~~~~~~~~ 183 (273)
T 3dff_A 130 HDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPD------------HEATRDAALFATHEKNVPVR 183 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH------------HHHHHHHHHHHHHHHTCCEE
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCCCChH------------HHHHHHHHHHHHHHcCCCEE
Confidence 3456667777788889999999999888776643 34444455555555566654
No 27
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=57.61 E-value=26 Score=34.18 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHHH
Q 018685 256 LDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSV 334 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~v 334 (352)
+.+.+..+.++|+|++|+|.... -...+|.+ ++. +.++-++.++||+.+--.||...........+
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdDi-------~~v------~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~ 151 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMDL-------EGL------APKLEAEIGIPIVVARANGLDYAFTQGEDTVL 151 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCCH-------HHH------HHHHHHHHSSCEEEEECCTTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhCH-------HHH------HHHHhhccCCcEEEEecCCccccHHHHHHHHH
Confidence 46677778889999988776543 44444432 222 22222345899999999999865556666666
Q ss_pred HHHhhc
Q 018685 335 ENLSRK 340 (352)
Q Consensus 335 ~~l~~~ 340 (352)
.+++..
T Consensus 152 ~al~~~ 157 (460)
T 2xdq_A 152 AAMAAR 157 (460)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 666653
No 28
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=56.87 E-value=12 Score=34.18 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEE
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~ 316 (352)
..+...+.+.|..++++++||+|+.-.|.|.|-+ .....+.+.+.++..+.|++.
T Consensus 127 ~~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpD------------H~~~~~a~~~A~~~~~~~~~~ 181 (270)
T 3dfi_A 127 HDLVAAIREDIESMIAECDPTLVLTCVAIGKHPD------------HKATRDATLLAARERGIPLRL 181 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH------------HHHHHHHHHHHHHHTTCCEEE
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEeCCCCCCChh------------HHHHHHHHHHHHHHcCCCeeE
Confidence 3455667777788889999999999888776643 344444455555555666543
No 29
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=56.66 E-value=18 Score=36.31 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcC-CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAG-TDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANS 333 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~ 333 (352)
.+.+.|..+.+.|+|++|+|... .-...+|.+. + +.+-++. +.||+.+---||...........
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~-------~-------v~~~~~~-~~pVi~v~tpgf~g~~~~G~~~a 136 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPN-------G-------ISRALNL-PVPVVPLELPSYSRKENYGADET 136 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHH-------H-------HHHHHTC-SSCEEECCCCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHH-------H-------HHHHhcC-CCCEEEEECCCcCCchhHHHHHH
Confidence 45566666778899997766655 5666666442 2 2222233 78999999999987655555566
Q ss_pred HHHHhhc
Q 018685 334 VENLSRK 340 (352)
Q Consensus 334 v~~l~~~ 340 (352)
+.+++..
T Consensus 137 l~alv~~ 143 (525)
T 3aek_B 137 FRALVRA 143 (525)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 30
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=55.86 E-value=7.8 Score=33.37 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCC-CCCCCCCCCCCc-CCHHHHHHHHHHHHHHHhhC--CCCEEEEe
Q 018685 267 FDPELVIYNAGT-DILEGDPLGMLK-ISPDGIAARDEKTFRFARSR--NIPIVMLT 318 (352)
Q Consensus 267 f~PdlIvvsaG~-D~~~~Dplg~~~-lt~~~y~~~~~~l~~~a~~~--~~~~v~vl 318 (352)
.+||+|+|..|. |...+-|.+.+. .+.+.|..--+.+++.+++. +.+++++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 499999999998 777766766553 23333443333444444444 67777654
No 31
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=54.26 E-value=25 Score=34.14 Aligned_cols=51 Identities=25% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCC---------HHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKIS---------PDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt---------~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.+..+.++++|++||| |++..+... .+.+.++.+.|..+|+++++|++++-
T Consensus 301 ~~~~l~~~~~~~lIvI---------D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ls 360 (444)
T 2q6t_A 301 RARRLVSQNQVGLIII---------DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALS 360 (444)
T ss_dssp HHHHHHHHSCCCEEEE---------ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHcCCCEEEE---------cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 3444556789999998 444433221 34567788889999999999999874
No 32
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=53.34 E-value=30 Score=33.96 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC----CCCEEEEeCCCCCCChHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR----NIPIVMLTSGGYMKSSARV 329 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~----~~~~v~vleGGY~~~~~~~ 329 (352)
.+.+.|..+.+.|+|++|+|.... -...+|.+ .. .+.++-++. +.||+.+--.||..+....
T Consensus 83 ~L~~aI~~~~~~~~P~~I~V~tTC~~e~IGdDi----------~~---v~~~~~~~~~~~~~~pvi~v~tpgf~gs~~~G 149 (458)
T 1mio_B 83 NIKTAVKNIFSLYNPDIIAVHTTCLSETLGDDL----------PT---YISQMEDAGSIPEGKLVIHTNTPSYVGSHVTG 149 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHHHTCCH----------HH---HHHHHHHTTCSCTTCEEEEECCCTTSSCHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHHhcCH----------HH---HHHHHHHhcCCCCCCeEEEEECCCCcccHHHH
Confidence 445666677788999998876543 33333321 11 111222333 6788888888887655555
Q ss_pred HHHHHHHHhh
Q 018685 330 IANSVENLSR 339 (352)
Q Consensus 330 ~~~~v~~l~~ 339 (352)
....+.+++.
T Consensus 150 ~~~a~~al~~ 159 (458)
T 1mio_B 150 FANMVQGIVN 159 (458)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 33
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=50.72 E-value=35 Score=33.37 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHhhcCCC--EEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 260 LEVAGHTFDPE--LVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 260 l~p~~~~f~Pd--lIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
+..+.++++|+ +||| |++..|.. ..+...++.+.|..+|+++++|++++-.
T Consensus 300 ir~l~~~~~~~~~lIVI---------D~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 358 (444)
T 3bgw_A 300 TRQTKRKNPGKRVIVMI---------DYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 358 (444)
T ss_dssp HHHHHHHSCSSCEEEEE---------ECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHhCCCCeEEEE---------ecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 34455678999 9998 44443332 1335677888999999999999988753
No 34
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=50.50 E-value=22 Score=32.80 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCC--EEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 258 EALEVAGHTFDPE--LVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 258 ~~l~p~~~~f~Pd--lIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
..+..+.++++++ +||| |.+..+.. ..+...++.+.|.++|++++++++++-.
T Consensus 169 ~~i~~l~~~~~~~~~lVVI---------D~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsq 229 (315)
T 3bh0_A 169 SKTRQTKRKNPGKRVIVMI---------DYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 229 (315)
T ss_dssp HHHHHHHHTSSSCCEEEEE---------ECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHhcCCCCeEEEE---------eCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 3344455777888 9888 33322221 1256677888899999999999998743
No 35
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=50.30 E-value=10 Score=36.05 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhc-CCCEEEEEcCCCCCCCCCCCCCcCCH------HHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 255 KLDEALEVAGHTF-DPELVIYNAGTDILEGDPLGMLKISP------DGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 255 ~~~~~l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~~lt~------~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.+...+..+.+++ ++++||| |.|..|.... ....++.+.|..+|+++++||+++-
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVI---------DyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~ls 203 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFI---------DYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALV 203 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE---------EEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEE---------echHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3444455556778 8999998 5555544321 2366788899999999999999873
No 36
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=49.76 E-value=15 Score=32.41 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=17.3
Q ss_pred HcCCCeEEEEeccCcCCchhhhhhcC
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKDFSS 212 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~if~~ 212 (352)
+.| +||++||+|. +|+.+...+..
T Consensus 27 ~~G-~~VlliD~D~-q~~~~~~~~~~ 50 (269)
T 1cp2_A 27 AMG-KTIMVVGCDP-KADSTRLLLGG 50 (269)
T ss_dssp TTT-CCEEEEEECT-TSCSSHHHHTS
T ss_pred HCC-CcEEEEcCCC-CCCHHHHhcCC
Confidence 334 6999999996 56777766643
No 37
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=49.31 E-value=14 Score=31.13 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=31.4
Q ss_pred hhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCC--CCEEEE
Q 018685 265 HTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRN--IPIVML 317 (352)
Q Consensus 265 ~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~--~~~v~v 317 (352)
..++||+|++..|. |... ..+.+.|..-.+.+++.+++.+ .+++++
T Consensus 82 ~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 130 (214)
T 2hsj_A 82 YGGAVDKIFLLIGTNDIGK-------DVPVNEALNNLEAIIQSVARDYPLTEIKLL 130 (214)
T ss_dssp CCSCCCEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HhcCCCEEEEEEecCcCCc-------CCCHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 45799999999998 5443 3567777766666666666654 455554
No 38
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=48.81 E-value=20 Score=35.79 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 018685 258 EALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSVEN 336 (352)
Q Consensus 258 ~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~~v~~ 336 (352)
+.|..+.+.|+|++|+|.... -...+|.+. ++.+ ++-++.+.||+.+--.||...........+.+
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~-------~v~~------~~~~~~g~pVi~v~tpgf~g~~~~G~d~a~~~ 144 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDLQ-------NFVR------RASLSTTADVLLADVNHYRVNELQAADRTLEQ 144 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCCHH-------HHHH------HHHHHCSSEEEECCCCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccCHH-------HHHH------HhhhccCCCEEEeeCCCcccchhHHHHHHHHH
Confidence 444455678999998887765 555555432 2222 22234689999999999997654444445555
Q ss_pred Hh
Q 018685 337 LS 338 (352)
Q Consensus 337 l~ 338 (352)
++
T Consensus 145 lv 146 (511)
T 2xdq_B 145 IV 146 (511)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 39
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=48.50 E-value=19 Score=34.75 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEEe
Q 018685 262 VAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLT 318 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~vl 318 (352)
..+.+.+||+|||..|. |...+ ++.+.|..-.+.+++.+++. +.||+++.
T Consensus 238 ~~l~~~~pdlVvI~lGtND~~~~-------~~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 238 RLIRDLPADLISLRVGTSNFMDG-------DGFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHSCCSEEEEEESHHHHTTT-------CCTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHhccCCCEEEEEeeccCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 34466799999999998 65442 44555555444555555554 56776654
No 40
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=47.87 E-value=28 Score=34.32 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh-----CCCCEEEEeCCCCCCChH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARS-----RNIPIVMLTSGGYMKSSA 327 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~-----~~~~~v~vleGGY~~~~~ 327 (352)
+.+.+.|..+.+.|+|++|+|.... -...+|.+. + +.+-+++ .+.||+.+--.||..+..
T Consensus 78 ~~L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~-------~-------v~~~~~~~~~~~~~~pVi~v~tpgf~gs~~ 143 (458)
T 3pdi_B 78 ENVVEALKTICERQNPSVIGLLTTGLSETQGCDLH-------T-------ALHEFRTQYEEYKDVPIVPVNTPDFSGCFE 143 (458)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEEECHHHHTTCTTHH-------H-------HHHHTTTSCCSCSCSCEEEECCCTTSSCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcHHHHhcCCHH-------H-------HHHHHHHhccccCCCeEEEeeCCCcCCchh
Confidence 3455566667788999998887654 444444221 1 2222233 278999999999987666
Q ss_pred HHHHHHHHHHhhcCC
Q 018685 328 RVIANSVENLSRKGL 342 (352)
Q Consensus 328 ~~~~~~v~~l~~~~l 342 (352)
......+.+++....
T Consensus 144 ~G~~~a~~al~~~l~ 158 (458)
T 3pdi_B 144 SGFAAAVKAIVETLV 158 (458)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhh
Confidence 677777777776444
No 41
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=47.10 E-value=79 Score=28.57 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=45.8
Q ss_pred CcCCchhhhhhcC-CCcEEEEEecCCCCCCCCcccCCcccccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEE----
Q 018685 200 AHQGNGHEKDFSS-DSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIY---- 274 (352)
Q Consensus 200 vHHGnGTq~if~~-d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvv---- 274 (352)
-++|.=++.|.++ ++.|.+|.+.. |=..+.=+.+.+..+.+.+..+-++-.-..||+
T Consensus 8 ~~~GsM~e~il~~~~~gVa~itlnR------------------P~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G 69 (274)
T 4fzw_C 8 HHHGSMMEFILSHVEKGVMTLTLNR------------------PERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG 69 (274)
T ss_dssp --------CEEEEEETTEEEEEECC------------------TTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred CccccccccEEEEEECCEEEEEEcC------------------cCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 3445555555443 45576666543 211223356777778887776644333345655
Q ss_pred ---EcCCCCCCC--CCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 275 ---NAGTDILEG--DPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 275 ---saG~D~~~~--Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
++|.|...- ++.+...-....+.+..+.+......+..|+|+...|
T Consensus 70 ~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 120 (274)
T 4fzw_C 70 RGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNG 120 (274)
T ss_dssp SCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECS
T ss_pred CceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 355554321 1111111011223332333444445678899987765
No 42
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=47.05 E-value=17 Score=36.16 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHHHH
Q 018685 254 KKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIAN 332 (352)
Q Consensus 254 ~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 332 (352)
+.+.+.|..+.+.|+|++|+|.... -...+|.+ +++. .++-++.+.||+.+---||..+-......
T Consensus 108 ~kL~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDl-------~~v~------~~~~~~~~~pVi~v~tpgf~gs~~~G~~~ 174 (483)
T 3pdi_A 108 KRLFHAIRQAVESYSPPAVFVYNTCVPALIGDDV-------DAVC------KAAAERFGTPVIPVDSAGFYGTKNLGNRI 174 (483)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEECCHHHHHTTCCH-------HHHH------HHHHHHHCSCEEEECCCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHhcCCH-------HHHH------HHHHHHhCCCEEEEeCCCcccchhhHHHH
Confidence 3455666677788999988776543 44444432 2222 22223458999999999998754443333
Q ss_pred HHHHHh
Q 018685 333 SVENLS 338 (352)
Q Consensus 333 ~v~~l~ 338 (352)
.+.+++
T Consensus 175 a~~al~ 180 (483)
T 3pdi_A 175 AGEAML 180 (483)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 334443
No 43
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=47.00 E-value=26 Score=30.43 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=31.9
Q ss_pred HHHHhhcCC-CEEEEEcCC-CCCCCC--CC-CC---------------CcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 261 EVAGHTFDP-ELVIYNAGT-DILEGD--PL-GM---------------LKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 261 ~p~~~~f~P-dlIvvsaG~-D~~~~D--pl-g~---------------~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
..++...+| |+||++.|. |+...+ +- +. ...+.+.|.+--+.+.+.+++.+.+++++
T Consensus 55 ~~~l~~~~~~d~ViI~~G~ND~~~~~~~~~r~~~~g~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~vil~ 131 (233)
T 1k7c_A 55 ENIADVVTAGDYVIVEFGHNDGGSLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAKGAKVILS 131 (233)
T ss_dssp HHHHHHCCTTCEEEECCCTTSCSCGGGCCSCCCBSSSSSCEEEEEETTEEEEEEBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhhCCCCCEEEEEccCCCCCCcCCcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 344455666 999999999 766542 10 10 01223456655555666666666555544
No 44
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=46.71 E-value=16 Score=34.59 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=17.7
Q ss_pred HcCCCeEEEEeccCcCCchhhhhhc
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~if~ 211 (352)
+.| +||++||+|.. ||.+..++.
T Consensus 28 ~~G-~rVLlID~D~q-~~~~~~l~~ 50 (361)
T 3pg5_A 28 LQG-KRVLYVDCDPQ-CNATQLMLT 50 (361)
T ss_dssp HTT-CCEEEEECCTT-CTTHHHHSC
T ss_pred hCC-CcEEEEEcCCC-CChhhhhcC
Confidence 344 69999999977 788877653
No 45
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=46.65 E-value=16 Score=31.47 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.5
Q ss_pred CeEEEEeccCcCCchh
Q 018685 191 SRVMIIDLDAHQGNGH 206 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGT 206 (352)
+||++||+|..+||=+
T Consensus 32 ~~VlliD~D~~~~~l~ 47 (237)
T 1g3q_A 32 RKVLAVDGDLTMANLS 47 (237)
T ss_dssp CCEEEEECCTTSCCHH
T ss_pred CeEEEEeCCCCCCChh
Confidence 6999999999887644
No 46
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=46.45 E-value=35 Score=33.56 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcC------CHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKI------SPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l------t~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
+..+.++++|++|||- ++..+.. ..+...++.+.|.++|++++++++++
T Consensus 346 i~~~~~~~~~~lvVID---------~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~ 400 (503)
T 1q57_A 346 LAYMRSGLGCDVIILD---------HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI 400 (503)
T ss_dssp HHHHHHTTCCSEEEEE---------CTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCCCEEEEc---------cchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 3344577899999983 3332221 12445667788999999999998887
No 47
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=45.53 E-value=17 Score=31.98 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.6
Q ss_pred CeEEEEeccCcCCchh
Q 018685 191 SRVMIIDLDAHQGNGH 206 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGT 206 (352)
+||++||+|..+||=+
T Consensus 32 ~~VlliD~D~~~~~l~ 47 (263)
T 1hyq_A 32 HDVTIVDADITMANLE 47 (263)
T ss_dssp CCEEEEECCCSSSSHH
T ss_pred CcEEEEECCCCCCCcc
Confidence 6999999999887644
No 48
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=45.47 E-value=20 Score=32.19 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=15.5
Q ss_pred CeEEEEeccCcCCchhhhhhc
Q 018685 191 SRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~if~ 211 (352)
+||++||+|.. ++.+..++.
T Consensus 31 ~rVlliD~D~q-~~~~~~~~~ 50 (289)
T 2afh_E 31 KKVMIVGCDPK-ADSTRLILH 50 (289)
T ss_dssp CCEEEEEECSS-SCSSHHHHC
T ss_pred CeEEEEecCCC-CCHHHHhcC
Confidence 69999999974 666766654
No 49
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=45.12 E-value=91 Score=28.57 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
+++..+|++++..+ .+.+||+||+ +| |.. -.-.-+.+.+..+.+.+.++ .+.+.|++++ -|.-+
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~D~vl~-~G-Dl~-----d~~~~~~~~~~~~~~~l~~l-~~~~~~v~~v-~GNHD 86 (333)
T 1ii7_A 23 EEFAEAFKNALEIA-VQENVDFILI-AG-DLF-----HSSRPSPGTLKKAIALLQIP-KEHSIPVFAI-EGNHD 86 (333)
T ss_dssp HHHHHHHHHHHHHH-HHTTCSEEEE-ES-CSB-----SSSSCCHHHHHHHHHHHHHH-HTTTCCEEEE-CCTTT
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEE-CC-CcC-----CCCCCCHHHHHHHHHHHHHH-HHCCCcEEEe-CCcCC
Confidence 46677888877654 6789998887 34 322 11122345555544444443 3346786665 44443
No 50
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=45.10 E-value=71 Score=29.28 Aligned_cols=63 Identities=25% Similarity=0.324 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCC-CCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTD-ILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D-~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
++...+|++++..+ ++.+||+||+ +| | .. -.-..+.+.+..+.+.+.++... .|++++ -|.-+
T Consensus 44 ~~~~~~l~~lv~~~-~~~~~D~vli-aG-D~l~-----d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i-~GNHD 107 (336)
T 2q8u_A 44 EELKKALDKVVEEA-EKREVDLILL-TG-DLLH-----SRNNPSVVALHDLLDYLKRMMRT--APVVVL-PGNHD 107 (336)
T ss_dssp HHHHHHHHHHHHHH-HHHTCSEEEE-ES-CSBS-----CSSCCCHHHHHHHHHHHHHHHHH--SCEEEC-CC---
T ss_pred HHHHHHHHHHHHHH-HHhCCCEEEE-CC-cccc-----CCCCCCHHHHHHHHHHHHHHHhc--CCEEEE-CCCCC
Confidence 46677888877655 6679998877 44 3 22 11123455444444555555432 676554 45443
No 51
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=45.04 E-value=17 Score=31.66 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.1
Q ss_pred CeEEEEeccCcCCchhh
Q 018685 191 SRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq 207 (352)
+||++||+|..+||=+.
T Consensus 32 ~~VlliD~D~~~~~~~~ 48 (260)
T 3q9l_A 32 KKTVVIDFAIGLRNLDL 48 (260)
T ss_dssp CCEEEEECCCSSCCHHH
T ss_pred CcEEEEECCCCCCChhH
Confidence 69999999998877544
No 52
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=44.79 E-value=21 Score=30.80 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=15.7
Q ss_pred CeEEEEeccCcCCchhhhh
Q 018685 191 SRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~i 209 (352)
+||++||+|...||=+..+
T Consensus 35 ~~VlliD~D~~~~~l~~~~ 53 (245)
T 3ea0_A 35 IHVLAVDISLPFGDLDMYL 53 (245)
T ss_dssp CCEEEEECCTTTCCGGGGT
T ss_pred CCEEEEECCCCCCCHHHHh
Confidence 6999999999988766554
No 53
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=42.55 E-value=76 Score=28.51 Aligned_cols=150 Identities=15% Similarity=0.072 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecC--CCCCCCCcc--------cCCc-ccccccCCCC
Q 018685 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFN--PGIYPRDYE--------ARRF-IDQKVEVVSG 246 (352)
Q Consensus 178 AIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~--~~~yP~~g~--------~~~~-~~~NvPL~~g 246 (352)
-+|+.||.++.+.++|+.||.|-..- |...+-+.++. .. .-.||-+.- .+.. .-+.=|-|+
T Consensus 23 ~~a~~hL~~~l~~~~va~id~d~~~d------y~~~rP~v~~~-~g~~~~~~p~~~~~~~~~~d~~~~~~lll~g~eP~- 94 (250)
T 3mnf_A 23 STAVAHLDREWKGEVFAALDAEDYYD------FQVNRPTVWLD-GGVRKITWPTTRLSVVRVGGEKPRDLVLVRGIEPS- 94 (250)
T ss_dssp HHHHHHHHHHTTCEEEEECCGGGTCC------TTTSCCEEEEE-TTEEEEECCCEEEEEEEEESSSEEEEEEEEEECCS-
T ss_pred HHHHHHHHHHcCCeEEEEEechhccc------cCCCCCEEEEe-CCEEEeecCCceEEEEecCCCCCCcEEEEECCCCc-
Confidence 47889999999999999999876531 22222233332 11 012342110 0011 112223342
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCC--CCCCCCCCcC-CHHHH--------------HHHHHHHHHHHhh
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDIL--EGDPLGMLKI-SPDGI--------------AARDEKTFRFARS 309 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~--~~Dplg~~~l-t~~~y--------------~~~~~~l~~~a~~ 309 (352)
.. .+.|-+.+..++++|+.+.||.-.|+.+- ...|+.-+.. |.... .-+...+...+.+
T Consensus 95 ~~----w~~f~~~vl~~a~~~gv~~iv~lgg~~~~~phtrp~~v~~~at~~~l~~~~~~~~~~~~~p~gi~glL~~~~~~ 170 (250)
T 3mnf_A 95 MR----WRSFCNELLAFAHELGVELVVVLGALLGDTPHTRPVPVSGVTSDPDLARTMDLEETKYEGPTGIVGILQEACTH 170 (250)
T ss_dssp SC----HHHHHHHHHHHHHHHTCCEEEEEEEEEESCCTTSCCCEEEEECCHHHHHHSCCCCCCCCSCCCHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCcceEEEECCHHHHHhhhccccccccCccHHHHHHHHHHH
Confidence 22 35566666677899999999999998432 2345332111 11111 1123356677777
Q ss_pred CCCCEEEEeC--CCCCC-----ChHHHHHHHHHHHhh
Q 018685 310 RNIPIVMLTS--GGYMK-----SSARVIANSVENLSR 339 (352)
Q Consensus 310 ~~~~~v~vle--GGY~~-----~~~~~~~~~v~~l~~ 339 (352)
.|++.+.++. =+|-. ..+..+-+.+..+++
T Consensus 171 ~gi~a~~l~~~vp~Y~~~~pdP~AA~~lL~~l~~~~g 207 (250)
T 3mnf_A 171 AGVPAVSLWAAVPHYVSQPPNPKATLALLNRLEDLID 207 (250)
T ss_dssp HTCCEEEEEEEEEGGGCCSCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEeCCccccCCCCHHHHHHHHHHHHHHhC
Confidence 8999887664 35632 224444445555544
No 54
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=41.46 E-value=21 Score=31.58 Aligned_cols=16 Identities=50% Similarity=0.918 Sum_probs=12.8
Q ss_pred CeEEEEeccCcCCchhh
Q 018685 191 SRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq 207 (352)
+||++||+|. +||-+.
T Consensus 36 ~~VlliD~D~-~~~~~~ 51 (257)
T 1wcv_1 36 KRVLLVDLDP-QGNATS 51 (257)
T ss_dssp CCEEEEECCT-TCHHHH
T ss_pred CCEEEEECCC-CcCHHH
Confidence 6999999998 576543
No 55
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=41.07 E-value=53 Score=31.88 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCc-------CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLK-------ISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~-------lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
.+..+.++.+|++|||- .+..+. -..+...++.+.|..+|++++++++++-.
T Consensus 304 ~~~~l~~~~~~~livID---------~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 304 KCRRLKQESGLGMIVID---------YLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHTTTCCCEEEEE---------CGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEc---------cHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 34445567899999982 222221 13456678888899999999999998854
No 56
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=40.21 E-value=21 Score=30.70 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.0
Q ss_pred HHcCCCeEEEEeccCcCCchh
Q 018685 186 VQLNISRVMIIDLDAHQGNGH 206 (352)
Q Consensus 186 ~~~~~~rV~IiD~DvHHGnGT 206 (352)
.+.| +||++||+|.. ||=+
T Consensus 25 a~~g-~~VlliD~D~~-~~l~ 43 (254)
T 3kjh_A 25 ASDY-DKIYAVDGDPD-SCLG 43 (254)
T ss_dssp TTTC-SCEEEEEECTT-SCHH
T ss_pred HHCC-CeEEEEeCCCC-cChH
Confidence 3445 79999999995 5543
No 57
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=38.81 E-value=24 Score=31.81 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=15.8
Q ss_pred HcCCCeEEEEeccCcCCchhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEK 208 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~ 208 (352)
+.| +||++||+|..+|+=+..
T Consensus 31 ~~G-~~VlliD~D~~q~~l~~~ 51 (286)
T 2xj4_A 31 YGG-AKVAVIDLDLRQRTSARF 51 (286)
T ss_dssp HTT-CCEEEEECCTTTCHHHHH
T ss_pred HCC-CcEEEEECCCCCCCHHHH
Confidence 334 699999999987776543
No 58
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=38.56 E-value=94 Score=25.56 Aligned_cols=95 Identities=17% Similarity=0.279 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE---------
Q 018685 248 TTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML--------- 317 (352)
Q Consensus 248 ~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v--------- 317 (352)
.-++|.+.+++++..+ ++..|+..|+-++. -.....+.....-..+...+..+.+.++|++.+++++=+
T Consensus 90 ~~~~~~~~l~~ii~~l-~~~~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~~~~~ 168 (200)
T 4h08_A 90 TEEEYDKSFPKLIKII-RKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIEVNDLWKVVIDHPE 168 (200)
T ss_dssp CHHHHHHHHHHHHHHH-HHHCTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTCEEECHHHHHTTCGG
T ss_pred CHHHHHHHHHHHHHHH-hhhCCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhhcceEEEecHHhHhcCHH
Confidence 4578999999988766 66677754443332 111111111112223444555566778888888776521
Q ss_pred ---eCCCCCCCh--HHHHHHHHHHHhhcCCC
Q 018685 318 ---TSGGYMKSS--ARVIANSVENLSRKGLI 343 (352)
Q Consensus 318 ---leGGY~~~~--~~~~~~~v~~l~~~~l~ 343 (352)
..-|-+++. .+.+++.|...+.+.|.
T Consensus 169 ~~~~~Dg~Hpn~~Gy~~~A~~i~~~i~~~L~ 199 (200)
T 4h08_A 169 YYAGGDGTHPIDAGYSALANQVIKVIKNVLV 199 (200)
T ss_dssp GTTTSCSSSCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HhcCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 123444443 56777777777666554
No 59
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=38.55 E-value=98 Score=29.17 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCC-CCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPL-GMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYM 323 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dpl-g~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~ 323 (352)
.++...+|++++.- +++.+||+||+ +| |=+ -.-..+.+.+..+.+.+.++... +|++++ .|.-+
T Consensus 25 ~~~~~~~l~~l~~~-~~~~~~D~vli-aG------Dl~hd~~~~~~~~~~~~~~~l~~l~~~--~~v~~i-~GNHD 89 (379)
T 3tho_B 25 REELKKALDKVVEE-AEKREVDLILL-TG------DLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVL-PGNQD 89 (379)
T ss_dssp HHHHHHHHHHHHHH-HHHHTCSEEEE-CS------CCBSCSSSCCHHHHHHHHHHHHHHHHH--SCEEEC-CCTTS
T ss_pred hHHHHHHHHHHHHH-HHhcCCCEEEE-CC------CccccCCCCCHHHHHHHHHHHHHHHhC--CCEEEE-cCCCc
Confidence 45677788776654 47789999987 33 433 22334566677666666666543 676554 45443
No 60
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=38.33 E-value=88 Score=29.41 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcC--CCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCC-EEEEeCCCCCCC
Q 018685 251 EYLKKLDEALEVAGHTFD--PELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIP-IVMLTSGGYMKS 325 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~--PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~-~v~vleGGY~~~ 325 (352)
.+...+.+.+..++++|+ |+.|++..+ ..|.+. .+...+....+.+.+..++.+.. +|++.+-+|+.+
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~--~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~~ 187 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGS--WDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQY 187 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCS--SCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTTB
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCC--CCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCcccc
Confidence 455666666667777774 456666655 778773 45666666666677777776543 555665577654
No 61
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=37.48 E-value=41 Score=28.37 Aligned_cols=48 Identities=21% Similarity=0.419 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHH
Q 018685 248 TTNEYLKKLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTF 304 (352)
Q Consensus 248 ~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~ 304 (352)
.-.+.+..+++.+ ...+||+|++..|. |...+. ..+.+.|..+.+.+.
T Consensus 67 ~~~~~~~~l~~~l----~~~~pd~vvi~~G~ND~~~~~-----~~~~~~l~~li~~i~ 115 (215)
T 2vpt_A 67 TIPQIASNINNWL----NTHNPDVVFLWIGGNDLLLNG-----NLNATGLSNLIDQIF 115 (215)
T ss_dssp CHHHHHHHHHHHH----HHHCCSEEEEECCHHHHHHHC-----CCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh----hccCCCEEEEEccccccCCCC-----ChhHHHHHHHHHHHH
Confidence 3445555555433 45799999999998 554322 233566666555443
No 62
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=37.14 E-value=1.3e+02 Score=27.48 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY 322 (352)
.++.+.|.+.+ |-+++|+-..||+-.|-.+..++ +-...+.+.+..+. +.|.++|+|.+||-
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~---------~~~~~~~~~i~~l~-~~G~~vVlVhGgG~ 69 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESE---------ELKAGFARDVVLMK-AVGINPVVVHGGGP 69 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSS---------HHHHHHHHHHHHHH-HTTCEEEEEECCCH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCc---------hHHHHHHHHHHHHH-HCCCeEEEEECCcH
Confidence 36788888886 45588999999999997776542 33445555555443 35778999999854
No 63
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=37.12 E-value=49 Score=32.86 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcC-CCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCC-ChHHHHH
Q 018685 255 KLDEALEVAGHTFD-PELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMK-SSARVIA 331 (352)
Q Consensus 255 ~~~~~l~p~~~~f~-PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~-~~~~~~~ 331 (352)
.+.+.|..+.+.|+ |++|+|.... -...+|.+. ++. .++-++.+.||+.+---||.. +-.....
T Consensus 130 kL~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdDl~-------~v~------~~~~~~~~~pVi~v~tpgf~g~s~~~G~~ 196 (492)
T 3u7q_A 130 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIE-------SVS------KVKGAELSKTIVPVRCEGFRGVSQSLGHH 196 (492)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECTHHHHTTCCHH-------HHH------HHHHHHHTCCEEEECCCTTSSSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCcHHHHHhcCHH-------HHH------HHHHHhhCCcEEEecCCCCCCCchhHHHH
Confidence 44555666778899 9988776543 444444332 222 222234589999999999997 5555555
Q ss_pred HHHHHHhh
Q 018685 332 NSVENLSR 339 (352)
Q Consensus 332 ~~v~~l~~ 339 (352)
..+.+++.
T Consensus 197 ~a~~al~~ 204 (492)
T 3u7q_A 197 IANDAVRD 204 (492)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455544
No 64
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=36.49 E-value=30 Score=31.32 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=15.2
Q ss_pred HcCCCeEEEEeccCcCCchhhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+.| +||++||+|. +||-+..+
T Consensus 67 ~~G-~~VlliD~D~-~~~~~~~l 87 (307)
T 3end_A 67 ILG-KRVLQIGCDP-KHDSTFTL 87 (307)
T ss_dssp HTT-CCEEEEEESS-SCCTTHHH
T ss_pred HCC-CeEEEEeCCC-CCCHHHHh
Confidence 334 6999999998 56666443
No 65
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=36.01 E-value=39 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=29.1
Q ss_pred hhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEEe
Q 018685 265 HTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLT 318 (352)
Q Consensus 265 ~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~vl 318 (352)
..++||+|+|..|. |..... .+.+.|..--+.+++.+++. +.+|+++.
T Consensus 210 ~~~~PdlVvI~lGtND~~~~~------~~~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 210 SKYVPQVVVINLGTNDFSTSF------ADKTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GGCCCSEEEEECCHHHHSSSC------CCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCEEEEeCccccCCCCC------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 36899999999998 765443 24455554444444444443 45566554
No 66
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=35.65 E-value=92 Score=29.34 Aligned_cols=60 Identities=12% Similarity=0.257 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
.+...+|++++..+ .+-+||+||+ +| |=+..-.-+.+.+..+.+.+.++. +.++|++++.
T Consensus 43 ~~~~~~l~~~v~~~-~~~~~D~Vli-aG------Dl~d~~~p~~~~~~~~~~~l~~L~-~~~~pv~~v~ 102 (386)
T 3av0_A 43 KDIYDSFKLCIKKI-LEIKPDVVLH-SG------DLFNDLRPPVKALRIAMQAFKKLH-ENNIKVYIVA 102 (386)
T ss_dssp HHHHHHHHHHHHHH-HTTCCSEEEE-CS------CSBSSSSCCHHHHHHHHHHHHHHH-HTTCEEEECC
T ss_pred HHHHHHHHHHHHHH-HHcCCCEEEE-CC------CCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEc
Confidence 45667888877655 6679999886 33 322222234455555445454443 2356766554
No 67
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=35.57 E-value=28 Score=32.56 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=28.0
Q ss_pred hhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEE
Q 018685 265 HTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVML 317 (352)
Q Consensus 265 ~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~v 317 (352)
..++||+|||..|. |..... .+.+.|..--+.+++.+++. +.+|+++
T Consensus 222 ~~~~Pd~VvI~lG~ND~~~~~------~~~~~~~~~l~~li~~ir~~~p~~~I~l~ 271 (347)
T 2waa_A 222 HRYQPDLIISAIGTNDFSPGI------PDRATYINTYTRFVRTLLDNHPQATIVLT 271 (347)
T ss_dssp GGCCCSEEEECCCHHHHSSSC------CCHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred ccCCCCEEEEEccccCCCCCC------CcHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 36799999999998 665432 33445555444455555543 3445443
No 68
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=35.56 E-value=1.6e+02 Score=26.26 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCcEEEEEecCCCCCCCCcccCCcccccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCC
Q 018685 213 DSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDP 285 (352)
Q Consensus 213 d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dp 285 (352)
++.|.+|.+... =..+.=+.+.+..+.+.+..+-++-....||+ ++|.|...-..
T Consensus 18 ~~~v~~itlnrp------------------~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~ 79 (267)
T 3oc7_A 18 GGPVARLTLNSP------------------HNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGS 79 (267)
T ss_dssp SSSEEEEEECCG------------------GGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC------
T ss_pred eCCEEEEEecCC------------------CccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhh
Confidence 677888776642 11123356777778777776644333345554 66777643220
Q ss_pred CCCCcCCHH-------HHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 286 LGMLKISPD-------GIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 286 lg~~~lt~~-------~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
..+.+ .+......++.....+..|+|+...|
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 117 (267)
T 3oc7_A 80 ----GGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDG 117 (267)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred ----ccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 01111 12222233444445578899876644
No 69
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=35.23 E-value=1.9e+02 Score=25.58 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHH-HHHHHHHHhhCCCCEEEEe
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAAR-DEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~-~~~l~~~a~~~~~~~v~vl 318 (352)
.=+.+.+..+.+.+..+-++-+...||+ ++|.|.-.- .... ..+.+... ...++.....+..|+|+..
T Consensus 26 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~---~~~~-~~~~~~~~~~~~~~~~l~~~~kPvIAav 101 (257)
T 2ej5_A 26 AFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV---TEEM-DHGDVLRSRYAPMMKALHHLEKPVVAAV 101 (257)
T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-----------CHHHHHHHTHHHHHHHHHHCCSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHH---hhcc-chhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3356777778777776644444556766 446665321 1111 12333321 2233344456788999876
Q ss_pred CC
Q 018685 319 SG 320 (352)
Q Consensus 319 eG 320 (352)
.|
T Consensus 102 ~G 103 (257)
T 2ej5_A 102 NG 103 (257)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 70
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=34.11 E-value=1.1e+02 Score=29.92 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFA 307 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a 307 (352)
.+....|++++.-+ ++.+||+||+ +| |. +-.-.-+.+.+....+.+.+++
T Consensus 54 ~d~~~~l~~ll~~~-~~~~~D~Vli-aG-Dl-----fd~~~~~~~~~~~~~~~L~r~~ 103 (431)
T 3t1i_A 54 NDTFVTLDEILRLA-QENEVDFILL-GG-DL-----FHENKPSRKTLHTCLELLRKYC 103 (431)
T ss_dssp THHHHHHHHHHHHH-HHTTCSEEEE-CS-CC-----BSSSSCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-hhcCCCEEEE-cC-cc-----ccCCCCCHHHHHHHHHHHHHHh
Confidence 46667888877655 6789999998 34 32 2233356777777777777665
No 71
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=33.92 E-value=29 Score=31.69 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.3
Q ss_pred CeEEEEeccCcCCc
Q 018685 191 SRVMIIDLDAHQGN 204 (352)
Q Consensus 191 ~rV~IiD~DvHHGn 204 (352)
+||++||.|...++
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 79999999998764
No 72
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=33.80 E-value=31 Score=30.96 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=14.9
Q ss_pred HcCCCeEEEEeccCcCCchhhhh
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~i 209 (352)
+.| +||++||+|.. |+-|+.+
T Consensus 63 ~~G-~rVlliD~D~q-~~~~~~l 83 (298)
T 2oze_A 63 KLN-LKVLMIDKDLQ-ATLTKDL 83 (298)
T ss_dssp HTT-CCEEEEEECTT-CHHHHHH
T ss_pred hCC-CeEEEEeCCCC-CCHHHHH
Confidence 345 69999999996 5655443
No 73
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=32.03 E-value=2.6e+02 Score=24.76 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCC-CcCCHHHHHHH---HHHHHHHHhhCCCCE
Q 018685 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGM-LKISPDGIAAR---DEKTFRFARSRNIPI 314 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~-~~lt~~~y~~~---~~~l~~~a~~~~~~~ 314 (352)
+.=+.+.+..|.+.+..+-++-+...||+ ++|.|...-..... -.-+.+.+... ...++.....+..|+
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (263)
T 3l3s_A 28 HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT 107 (263)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 34467888888888877644333345654 67777654332210 01122222222 223334445578899
Q ss_pred EEEeCC
Q 018685 315 VMLTSG 320 (352)
Q Consensus 315 v~vleG 320 (352)
|+...|
T Consensus 108 IAav~G 113 (263)
T 3l3s_A 108 IALVEG 113 (263)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 887654
No 74
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=31.61 E-value=38 Score=30.56 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.7
Q ss_pred CeEEEEeccCcCCch
Q 018685 191 SRVMIIDLDAHQGNG 205 (352)
Q Consensus 191 ~rV~IiD~DvHHGnG 205 (352)
+||++||.|...++-
T Consensus 112 ~rVLLID~D~~~~~l 126 (271)
T 3bfv_A 112 YKTLIVDGDMRKPTQ 126 (271)
T ss_dssp CCEEEEECCSSSCCH
T ss_pred CeEEEEeCCCCCccH
Confidence 799999999987653
No 75
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=31.58 E-value=55 Score=32.70 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcC
Q 018685 256 LDEALEVAGHTFDPELVIYNAG 277 (352)
Q Consensus 256 ~~~~l~p~~~~f~PdlIvvsaG 277 (352)
+.+.|..+.+.|+|++|+|...
T Consensus 129 L~~aI~~~~~~~~P~~I~V~tT 150 (519)
T 1qgu_B 129 MNLGLQNASALYKPEIIAVSTT 150 (519)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHHHHHHhhCCCEEEEeCC
Confidence 4566666778899999888654
No 76
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=31.31 E-value=55 Score=31.80 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhcCCCE--EEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEEEEeCCCCCCChHHHH
Q 018685 256 LDEALEVAGHTFDPEL--VIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIVMLTSGGYMKSSARVI 330 (352)
Q Consensus 256 ~~~~l~p~~~~f~Pdl--IvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v~vleGGY~~~~~~~~ 330 (352)
+.+.|..+. +++|++ |+|.... -...+|.+. ++ +.++-++. +.||+.+--.||........
T Consensus 102 L~~aI~~~~-~~~P~~~~I~V~tTC~~e~IGdDi~-------~v------~~~~~~~~~~~~pVi~v~t~gf~g~~~~G~ 167 (437)
T 3aek_A 102 LDREVAKLL-ERRPDIRQLFLVGSCPSEVLKLDLD-------RA------AERLSGLHAPHVRVYSYTGSGLDTTFTQGE 167 (437)
T ss_dssp HHHHHHHHH-HTCTTCCEEEEEECHHHHHTTCCHH-------HH------HHHHHHHSTTTCEEEEEECCTTTCCTTHHH
T ss_pred HHHHHHHHH-HhCCCccEEEEEcCCHHHHhhcCHH-------HH------HHHHHHhcCCCCeEEEeECCCCCCcHHHHH
Confidence 355666666 899999 8776543 444444322 21 22223445 88999999999986666677
Q ss_pred HHHHHHHhhc
Q 018685 331 ANSVENLSRK 340 (352)
Q Consensus 331 ~~~v~~l~~~ 340 (352)
...+.+++..
T Consensus 168 ~~a~~al~~~ 177 (437)
T 3aek_A 168 DTCLAAMVPT 177 (437)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHH
Confidence 7777777764
No 77
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=30.82 E-value=2.4e+02 Score=23.69 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=54.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHH-HHHHHHHHHHHHHhhCCCCEEEEe----
Q 018685 244 VSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPD-GIAARDEKTFRFARSRNIPIVMLT---- 318 (352)
Q Consensus 244 ~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~-~y~~~~~~l~~~a~~~~~~~v~vl---- 318 (352)
+++.+..+=+..+.+-+..++++|+||.+.| ++++-.-+.++. ...+.--.++-.+.+.++|+.-.-
T Consensus 39 ~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vai--------E~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP~~v 110 (166)
T 4ep4_A 39 SPQEPAKERVGRIHARVLEVLHRFRPEAVAV--------EEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQV 110 (166)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHCCSEEEE--------ECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCEEEE--------eehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 4445566666777777888899999999998 555544444322 222222223334455689986543
Q ss_pred ---CCCCCCChHHHHHHHHHHHhhc
Q 018685 319 ---SGGYMKSSARVIANSVENLSRK 340 (352)
Q Consensus 319 ---eGGY~~~~~~~~~~~v~~l~~~ 340 (352)
--||..-.=+.+..-|+.+++-
T Consensus 111 KkavtG~G~A~K~QV~~mV~~lL~l 135 (166)
T 4ep4_A 111 KQALAGHGHAAKEEVALMVRGILGL 135 (166)
T ss_dssp HHHHHSSTTCCHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 1355544456677777777763
No 78
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.82 E-value=38 Score=31.03 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=13.5
Q ss_pred CeEEEEeccCcCCchh
Q 018685 191 SRVMIIDLDAHQGNGH 206 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGT 206 (352)
+||++||.|..+++=+
T Consensus 134 ~rVLLID~D~r~~~l~ 149 (299)
T 3cio_A 134 QKVLFIDADLRRGYSH 149 (299)
T ss_dssp CCEEEEECCTTTCCHH
T ss_pred CcEEEEECCCCCccHH
Confidence 7999999999877644
No 79
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=29.97 E-value=2.2e+02 Score=22.93 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe--------
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT-------- 318 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl-------- 318 (352)
.+.++|...+++++..+. +-++.+|++..-. |- ....+-..++.+.+.++|++.+++++=+.
T Consensus 79 ~~~~~~~~~l~~li~~~~-~~~~~vil~~~~~------p~---~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~~~~~ 148 (190)
T 1ivn_A 79 FQPQQTEQTLRQILQDVK-AANAEPLLMQIRL------PA---NYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKP 148 (190)
T ss_dssp CCHHHHHHHHHHHHHHHH-HTTCEEEEECCCC------CG---GGCHHHHHHHHHHHHHHHHHTTCCEECCTHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHH-HcCCCEEEEeccC------Cc---chhHHHHHHHHHHHHHHHHHcCCeEEccHHhhccCCc
Confidence 456889999999888774 4478888775311 10 11123345566778888888888877542
Q ss_pred ----CCCCCCCh--HHHHHHHHHHHhhcCCCC
Q 018685 319 ----SGGYMKSS--ARVIANSVENLSRKGLIN 344 (352)
Q Consensus 319 ----eGGY~~~~--~~~~~~~v~~l~~~~l~~ 344 (352)
.-|.+++. .+.+++.+...+...+..
T Consensus 149 ~~~~~Dg~Hpn~~G~~~~a~~i~~~l~~~~~~ 180 (190)
T 1ivn_A 149 QWMQDDGIHPNRDAQPFIADWMAKQLQPLVNH 180 (190)
T ss_dssp GGBCTTSSSBCGGGHHHHHHHHHHHHTTTTC-
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 23333332 688888888888866653
No 80
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=29.88 E-value=38 Score=29.90 Aligned_cols=15 Identities=27% Similarity=0.164 Sum_probs=12.4
Q ss_pred CeEEEEeccCcCCch
Q 018685 191 SRVMIIDLDAHQGNG 205 (352)
Q Consensus 191 ~rV~IiD~DvHHGnG 205 (352)
+||++||+|...++=
T Consensus 48 ~~VlliD~D~~~~~l 62 (262)
T 2ph1_A 48 KKVGILDADFLGPSI 62 (262)
T ss_dssp CCEEEEECCSSCCHH
T ss_pred CeEEEEeCCCCCCCH
Confidence 699999999976553
No 81
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=29.85 E-value=48 Score=27.47 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHH-HHHhhCCCCEEEEeCCCC
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTF-RFARSRNIPIVMLTSGGY 322 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~-~~a~~~~~~~v~vleGGY 322 (352)
.|..++++|+|+.|+| +.|+ .++=|..--....+.+. .++...++|+..+=|=+=
T Consensus 46 ~l~~li~~~~~~~ivV--------GlP~-~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 46 RLSELIKDYTIDKIVL--------GFPK-NMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp HHHHHHTTSEEEEEEE--------ECCC-CBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHcCCCEEEE--------eeee-cCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 3556779999999998 5664 22222211122222222 333345899988666443
No 82
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=29.69 E-value=35 Score=32.16 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=13.4
Q ss_pred CeEEEEeccCcCCchhhhhhc
Q 018685 191 SRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~if~ 211 (352)
+||++||+| .+|| ....|.
T Consensus 173 ~rVlliD~D-~~~~-l~~~lg 191 (373)
T 3fkq_A 173 KKVFYLNIE-QCGT-TDVFFQ 191 (373)
T ss_dssp CCEEEEECC-TTCC-HHHHCC
T ss_pred CCEEEEECC-CCCC-HHHHcC
Confidence 699999999 6664 334443
No 83
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=29.66 E-value=82 Score=26.74 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
.+..++++++|++|++-.=......| +....+....+.+++++.+.+++++-.
T Consensus 119 ~i~~~~~~~~~~~vviD~~~~l~~~~--------~~~~~~~l~~l~~~~~~~~~~vi~~~h 171 (247)
T 2dr3_A 119 VLRQAIRDINAKRVVVDSVTTLYINK--------PAMARSIILQLKRVLAGTGCTSIFVSQ 171 (247)
T ss_dssp HHHHHHHHHTCCEEEEETSGGGTTTC--------GGGHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHhCCCEEEECCchHhhcCC--------HHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 34445577899999874321111112 223445556677888888888877643
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=29.15 E-value=65 Score=26.96 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=29.6
Q ss_pred HHHHhhcCCC--EEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 261 EVAGHTFDPE--LVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 261 ~p~~~~f~Pd--lIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
...+...+|+ +||+- .|...+...+....++.+.+.+++++.+..++++
T Consensus 114 ~~~~~~~~~~~~llilD--------e~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~ 164 (235)
T 2w0m_A 114 IEAKQKLGYGKARLVID--------SVSALFLDKPAMARKISYYLKRVLNKWNFTIYAT 164 (235)
T ss_dssp HHHHHHHCSSCEEEEEE--------TGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHhhCCCceEEEEE--------CchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3344667999 99883 2222221223345666677888887777776665
No 85
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=29.12 E-value=64 Score=31.24 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY 322 (352)
.++...|.+.+ |-+++|+-..|||-.|-.+..++ ....+.+.+..+ .+.|.++|+|-+||-
T Consensus 25 ~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~----------~~~~~~~~i~~l-~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 25 DSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGG----------TLNKLAADIGLL-SQLGIRLVLIHGAYH 85 (456)
T ss_dssp CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTST----------HHHHHHHHHHHH-HHTTCEEEEEECCHH
T ss_pred hHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCc----------hHHHHHHHHHHH-HHCCCeEEEEeCCcH
Confidence 56888898886 55699999999999997766432 144455555444 345778898988883
No 86
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=28.30 E-value=1.5e+02 Score=23.73 Aligned_cols=65 Identities=8% Similarity=0.060 Sum_probs=38.8
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCC--C--CCCcCCHHHHHHHHHHHHHHHhh
Q 018685 242 EVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDP--L--GMLKISPDGIAARDEKTFRFARS 309 (352)
Q Consensus 242 PL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dp--l--g~~~lt~~~y~~~~~~l~~~a~~ 309 (352)
++|+..+ .++...+.+++..+.++++ +.++..-.+....++ + -+++.+.+||..+.+.+.+..++
T Consensus 112 ~~p~~~~-~~~~~~~~~~~~~~a~~~~--~~~vd~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~~ 180 (185)
T 3hp4_A 112 YIPPNYG-PRYSKMFTSSFTQISEDTN--AHLMNFFMLDIAGKSDLMQNDSLHPNKKAQPLIRDEMYDSIKK 180 (185)
T ss_dssp CCCSTTC-HHHHHHHHHHHHHHHHHHC--CEEECCTTTTTTTCGGGBCTTSSSBCTTHHHHHHHHHHHHHHH
T ss_pred CCCCccc-HHHHHHHHHHHHHHHHHcC--CEEEcchhhhcCCCcccccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3444333 3567777777777777764 444433222211222 1 25788999999998888776543
No 87
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=27.87 E-value=1.1e+02 Score=27.57 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 018685 250 NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322 (352)
Q Consensus 250 ~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY 322 (352)
.++.+.|++.+ |-+++|+-..||+-.|--+..+ .+.+..+.+.+..+. +.|.++|+|.+||-
T Consensus 3 ~~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~---------~~~~~~~~~~i~~l~-~~G~~vVlVhGgG~ 64 (282)
T 2bty_A 3 IDTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQ---------ENAKKAFIQDIILLK-YTGIKPIIVHGGGP 64 (282)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHS---------HHHHHHHHHHHHHHH-HTTCEEEEEECCSH
T ss_pred hHHHHHHHHHH-HHHHHhcCCeEEEEECchhhCC---------hhHHHHHHHHHHHHH-HCCCcEEEEECCcH
Confidence 35677888876 5569999889999988554432 334555555555543 34778888888864
No 88
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=27.77 E-value=2.7e+02 Score=24.46 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
.=+.+.+..+.+.+..+-++-.-..||+ ++|.|... ++...-....+....+.+......+..|+|+...
T Consensus 23 Al~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~---~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 99 (254)
T 3hrx_A 23 AITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTE---FGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN 99 (254)
T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGG---TTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHH---hcccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4466778888888876644333345665 34555432 1222223344444444455555667889998876
Q ss_pred C
Q 018685 320 G 320 (352)
Q Consensus 320 G 320 (352)
|
T Consensus 100 G 100 (254)
T 3hrx_A 100 G 100 (254)
T ss_dssp S
T ss_pred C
Confidence 5
No 89
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=27.76 E-value=40 Score=29.63 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=13.5
Q ss_pred CeEEEEeccCcCCchhhhh
Q 018685 191 SRVMIIDLDAHQGNGHEKD 209 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~i 209 (352)
+||++||+|.. |+.+..+
T Consensus 56 ~~VlliD~D~~-~~~~~~~ 73 (267)
T 3k9g_A 56 NKVLLIDMDTQ-ASITSYF 73 (267)
T ss_dssp SCEEEEEECTT-CHHHHHT
T ss_pred CCEEEEECCCC-CCHHHHh
Confidence 79999999985 4555544
No 90
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=27.39 E-value=1.1e+02 Score=27.80 Aligned_cols=48 Identities=2% Similarity=0.024 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCc----EEE-EEec
Q 018685 174 YADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSR----VYI-LDMF 222 (352)
Q Consensus 174 fNnvAIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~----Vl~-iSiH 222 (352)
-+|..-.++.+++ .|+.+++++-+|.-.-.-+.++....|+ |+. +.+|
T Consensus 16 ~~d~~~vl~~a~~-~gV~~~v~~g~~~~~~~~~~~la~~~~~~~~~v~~~~GiH 68 (287)
T 3rcm_A 16 HDQQAAIVERALE-AGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVH 68 (287)
T ss_dssp TTCHHHHHHHHHH-TTEEEEEECCCSHHHHHHHHHHHHHHCTTSSSEEEEECCC
T ss_pred ccCHHHHHHHHHH-cCCeEEEEecCCHHHHHHHHHHHHhCCCCCceEEEEEEEC
Confidence 3454444455544 4788998887776655555666555454 543 4555
No 91
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=26.34 E-value=1.5e+02 Score=26.25 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHh-hcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 018685 253 LKKLDEALEVAGH-TFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322 (352)
Q Consensus 253 l~~~~~~l~p~~~-~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY 322 (352)
...+++++..+.+ .-+||+||+ +| |.... -+.+.|..+.+.+..+.++.+.|++++. |.-
T Consensus 50 ~~~l~~~l~~i~~~~~~~d~vi~-~G-Dl~~~-------~~~~~~~~~~~~l~~l~~~~~~pv~~v~-GNH 110 (330)
T 3ib7_A 50 DDRLGELLEQLNQSGLRPDAIVF-TG-DLADK-------GEPAAYRKLRGLVEPFAAQLGAELVWVM-GNH 110 (330)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEE-CS-CCBTT-------CCHHHHHHHHHHHHHHHHHHTCEEEECC-CTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEE-CC-CCCCC-------CCHHHHHHHHHHHHHHHhhcCCCEEEeC-CCC
Confidence 4556666665533 269999887 23 32211 1256777776666666666678866554 443
No 92
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=26.18 E-value=2.2e+02 Score=24.41 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=36.0
Q ss_pred HHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCChHHHH-HHHHHHH
Q 018685 262 VAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVI-ANSVENL 337 (352)
Q Consensus 262 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~~~~~-~~~v~~l 337 (352)
.++++++-.+.-+.+.++. .+| .+...+..+..+++|+++|.+.|.+..|.+..+..+.+ .+.+..+
T Consensus 58 ~~~~~~gl~~~~~~~~~~~--~~~-------~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l 125 (272)
T 2q02_A 58 NLAEKYGLEIVTINAVYPF--NQL-------TEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRL 125 (272)
T ss_dssp HHHHHTTCEEEEEEEETTT--TSC-------CHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHH
T ss_pred HHHHHcCCeEEechhhhcc--CCc-------HHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHH
Confidence 3446667666666554431 111 12334445667788888888888776554332333333 4444433
No 93
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=25.88 E-value=48 Score=28.31 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=14.3
Q ss_pred HHHcCCCeEEEEeccCcCCchhh
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq 207 (352)
..+.| ||++||+|.. |+-++
T Consensus 25 la~~g--~VlliD~D~q-~~~~~ 44 (209)
T 3cwq_A 25 LALQG--ETLLIDGDPN-RSATG 44 (209)
T ss_dssp HHTTS--CEEEEEECTT-CHHHH
T ss_pred HHhcC--CEEEEECCCC-CCHHH
Confidence 33446 9999999985 55554
No 94
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=25.70 E-value=54 Score=30.39 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=14.3
Q ss_pred HHHcCCCeEEEEeccCcCCchhh
Q 018685 185 FVQLNISRVMIIDLDAHQGNGHE 207 (352)
Q Consensus 185 ~~~~~~~rV~IiD~DvHHGnGTq 207 (352)
+.+.| +||++||+|.. ||-|.
T Consensus 72 LA~~G-kkVllID~Dpq-~~s~~ 92 (314)
T 3fwy_A 72 FSILG-KRVLQIGCDPK-HDSTF 92 (314)
T ss_dssp HHHTT-CCEEEEEESSS-CCTTH
T ss_pred HHHCC-CeEEEEecCCC-Ccccc
Confidence 33445 69999999983 45443
No 95
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.54 E-value=52 Score=30.32 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=14.4
Q ss_pred CeEEEEeccCcCCchhhhhhcC
Q 018685 191 SRVMIIDLDAHQGNGHEKDFSS 212 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~if~~ 212 (352)
+||++||.|. .+ .....|..
T Consensus 43 ~rVLlvD~D~-~~-~l~~~l~~ 62 (324)
T 3zq6_A 43 KKTLVISTDP-AH-SLSDSLER 62 (324)
T ss_dssp CCEEEEECCS-SC-CHHHHHTS
T ss_pred CcEEEEeCCC-Cc-CHHHHhCC
Confidence 6999999999 44 44555643
No 96
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=25.36 E-value=96 Score=28.92 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=16.0
Q ss_pred CeEEEEeccCcCCchhhhhhcCC
Q 018685 191 SRVMIIDLDAHQGNGHEKDFSSD 213 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGTq~if~~d 213 (352)
+||++||+|. .+ +....|..+
T Consensus 55 ~rVLlvD~D~-~~-~l~~~l~~~ 75 (349)
T 3ug7_A 55 LKVVIVSTDP-AH-SLRDIFEQE 75 (349)
T ss_dssp CCEEEEECCT-TC-HHHHHHCSC
T ss_pred CeEEEEeCCC-CC-CHHHHhCCC
Confidence 6999999999 33 666777544
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=24.85 E-value=1.1e+02 Score=25.53 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHhhcCCCEEEEEc---CCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 263 AGHTFDPELVIYNA---GTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 263 ~~~~f~PdlIvvsa---G~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
++++ +|++||+-. +.|.. +...-..+.+.++.+.+.+++++.+..++++-
T Consensus 101 l~~~-~~~lliiD~~~~~l~~~-----~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 101 TVDS-NFALVVVDSITAHYRAE-----ENRSGLIAELSRQLQVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp HCCT-TEEEEEEECCCCCTTGG-----GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred Hhhc-CCCEEEEcCcHHHhhhc-----CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3344 799999832 22221 11112235666677778889888888888764
No 98
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}
Probab=24.68 E-value=1.4e+02 Score=26.69 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=42.4
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEc--------CCCCCCCCCCCCCcCCHHHHHHHH-HHHHHHHh
Q 018685 238 DQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNA--------GTDILEGDPLGMLKISPDGIAARD-EKTFRFAR 308 (352)
Q Consensus 238 ~~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvvsa--------G~D~~~~Dplg~~~lt~~~y~~~~-~~l~~~a~ 308 (352)
++|=| +.+.=+.+.+..+.+.+..+-++-....||+.. |.|... +..-.-....+.... +.++....
T Consensus 23 tlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~---~~~~~~~~~~~~~~~~~~~~~~l~ 98 (265)
T 2ppy_A 23 HLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINF---LRSADPRFKTQFCLFCNETLDKIA 98 (265)
T ss_dssp EECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHH---HTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHH---HhccchhHHHHHHHHHHHHHHHHH
Confidence 45556 556667788888888887764443445666654 555421 111000012232222 33444445
Q ss_pred hCCCCEEEEeCC
Q 018685 309 SRNIPIVMLTSG 320 (352)
Q Consensus 309 ~~~~~~v~vleG 320 (352)
.+..|+|+...|
T Consensus 99 ~~~kPvIAav~G 110 (265)
T 2ppy_A 99 RSPQVYIACLEG 110 (265)
T ss_dssp HSSSEEEEEECS
T ss_pred cCCCCEEEEECC
Confidence 678899887654
No 99
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=24.45 E-value=1.6e+02 Score=26.43 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=37.4
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+.=+.+.+..+.+.+..+-++ ....||+ ++|.|....+ ....+......+++....+..|+|+..
T Consensus 43 Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~-------~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (264)
T 3he2_A 43 NALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA-------FAADYPDRLIELHKAMDASPMPVVGAI 114 (264)
T ss_dssp TCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT-------TGGGHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch-------hhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444667888888877766555 5667766 4666654111 112233323334444456788999877
Q ss_pred CC
Q 018685 319 SG 320 (352)
Q Consensus 319 eG 320 (352)
.|
T Consensus 115 ~G 116 (264)
T 3he2_A 115 NG 116 (264)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 100
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=24.17 E-value=95 Score=27.78 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCCCCCCCcccCCcccccccCCCCCChHHHHHHHH
Q 018685 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLD 257 (352)
Q Consensus 178 AIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d~~yl~~~~ 257 (352)
|+|.+.+. .| -+|+++|.+.-...-.+++-...+++.++. ++| ++.++..++++
T Consensus 22 aia~~la~--~G-a~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~------------------~Dv-----~~~~~v~~~v~ 75 (258)
T 4gkb_A 22 AISMRLAE--ER-AIPVVFARHAPDGAFLDALAQRQPRATYLP------------------VEL-----QDDAQCRDAVA 75 (258)
T ss_dssp HHHHHHHH--TT-CEEEEEESSCCCHHHHHHHHHHCTTCEEEE------------------CCT-----TCHHHHHHHHH
T ss_pred HHHHHHHH--cC-CEEEEEECCcccHHHHHHHHhcCCCEEEEE------------------eec-----CCHHHHHHHHH
Confidence 55655443 35 388888876544333333333334443321 111 33444545555
Q ss_pred HHHHHHHhhc-CCCEEEEEcCCCCCCCCCCCCCcCCHHHHHH-----------HHHHHHHHHhhCCCCEEEEe
Q 018685 258 EALEVAGHTF-DPELVIYNAGTDILEGDPLGMLKISPDGIAA-----------RDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 258 ~~l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~-----------~~~~l~~~a~~~~~~~v~vl 318 (352)
++ .++| +.|++|-.||.- ...+ +..+.+.|.+ +++.+....++.++.+|.+-
T Consensus 76 ~~----~~~~G~iDiLVNnAGi~--~~~~---~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnis 139 (258)
T 4gkb_A 76 QT----IATFGRLDGLVNNAGVN--DGIG---LDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNIS 139 (258)
T ss_dssp HH----HHHHSCCCEEEECCCCC--CCCC---TTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HH----HHHhCCCCEEEECCCCC--CCCC---ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44 4555 679999999963 2222 4566666554 33333333334467777663
No 101
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.10 E-value=1.2e+02 Score=30.32 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCCCCh-HHHHHH
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGT-DILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSS-ARVIAN 332 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY~~~~-~~~~~~ 332 (352)
.+.+.|..+.+.|+|++|+|.... -...+|. .+++ +.++.++.+.|++.+---||...+ ......
T Consensus 121 kL~~aI~~~~~~~~P~~I~V~tTC~~eiIGdD-------i~~v------~~~~~~~~~~pVi~v~tpGf~g~s~~~G~~~ 187 (533)
T 1mio_A 121 KLKDAIHEAYEMFHPAAIGVYATCPVGLIGDD-------ILAV------AATASKEIGIPVHAFSCEGYKGVSQSAGHHI 187 (533)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCHHHHHHTCC-------HHHH------HHHHHHHHSSCEEECCCCTTSSSSTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCHHHHhcCC-------HHHH------HHHHHHhhCCcEEEEeCCCCcCcchhHHHHH
Confidence 455666677788999999886543 2222332 1122 222223358899999999998632 333333
Q ss_pred HHHHHhh
Q 018685 333 SVENLSR 339 (352)
Q Consensus 333 ~v~~l~~ 339 (352)
.+.+++.
T Consensus 188 a~~al~~ 194 (533)
T 1mio_A 188 ANNTVMT 194 (533)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 102
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=24.04 E-value=55 Score=30.91 Aligned_cols=14 Identities=43% Similarity=0.805 Sum_probs=11.8
Q ss_pred CeEEEEeccCcCCch
Q 018685 191 SRVMIIDLDAHQGNG 205 (352)
Q Consensus 191 ~rV~IiD~DvHHGnG 205 (352)
+||++||+|. +||-
T Consensus 144 ~rVlliD~D~-q~~l 157 (398)
T 3ez2_A 144 LRILVIDLDP-QSSA 157 (398)
T ss_dssp CCEEEEEECT-TCHH
T ss_pred CeEEEEeCCC-CCCh
Confidence 6999999999 5663
No 103
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=24.02 E-value=2.7e+02 Score=24.96 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=38.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCH-HH----HHHHHHHHHHH
Q 018685 239 QKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISP-DG----IAARDEKTFRF 306 (352)
Q Consensus 239 ~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~-~~----y~~~~~~l~~~ 306 (352)
+|=|=+.+.=+.+.+..+.+.+..+-++-.- .||+ ++|.|.-.- ....-.. .. +....+.++..
T Consensus 41 lnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T 2f6q_A 41 FNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNF---TDIPPGGVEEKAKNNAVLLREFVGC 116 (280)
T ss_dssp ECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC-------CCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHH---hhcCcchhhHHHHHHHHHHHHHHHH
Confidence 3444333445678888888888776443334 5665 566665321 1111011 11 11212223333
Q ss_pred HhhCCCCEEEEeCC
Q 018685 307 ARSRNIPIVMLTSG 320 (352)
Q Consensus 307 a~~~~~~~v~vleG 320 (352)
...+..|+|+...|
T Consensus 117 l~~~~kPvIAav~G 130 (280)
T 2f6q_A 117 FIDFPKPLIAVVNG 130 (280)
T ss_dssp HHSCCSCEEEEECS
T ss_pred HHcCCCCEEEEECC
Confidence 45578899987664
No 104
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=23.53 E-value=80 Score=28.74 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG 320 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG 320 (352)
++-++-..+. +.+..+.++|+||++|+.+ |-+. ..|=.. -.++..+.++|++++.-|
T Consensus 44 m~pe~~~~~~-~~~~~~~~~~~pDfvI~is--------PN~a----~PGP~~----ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 44 MDPECVEAAV-EMALDIAEDFEPDFIVYGG--------PNPA----APGPSK----AREMLADSEYPAVIIGDA 100 (283)
T ss_dssp CSHHHHHHHH-HHHHHHHHHHCCSEEEEEC--------SCTT----SHHHHH----HHHHHHTSSSCEEEEEEG
T ss_pred CCHHHHHHHH-HHhhhhhhhcCCCEEEEEC--------CCCC----CCCchH----HHHHHHhCCCCEEEEcCC
Confidence 3344444433 3334455899999999854 2221 122221 223345678999988654
No 105
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=23.40 E-value=14 Score=28.42 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHH--HHHHHHHHHHHHhhCCCCE
Q 018685 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDG--IAARDEKTFRFARSRNIPI 314 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~--y~~~~~~l~~~a~~~~~~~ 314 (352)
+.++..+.++|+-++=|+.++.|...+.|+|.|-+...| -..+ +...++.++.+..+
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~-~~ai~~L~~~~v~v 92 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDF-GKFEKELIERQVKM 92 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHH-HHHHHHHHHTTCEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHH-HHHHHHHHHCCCEE
Confidence 456667778899999999999999999999998773322 1112 23445556666544
No 106
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=23.37 E-value=2.9e+02 Score=24.38 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
.=+.+.+..+.+.+..+-++-.-..||+ ++|.|...-.....-. ....+....+.++.....+..|+|+...
T Consensus 28 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (261)
T 3pea_A 28 AMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAK-QATELAQLGQVTFERVEKCSKPVIAAIH 106 (261)
T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHH-HHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchh-HHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3466777888888776644333445665 4566653321111000 0122333333444445567889988765
Q ss_pred C
Q 018685 320 G 320 (352)
Q Consensus 320 G 320 (352)
|
T Consensus 107 G 107 (261)
T 3pea_A 107 G 107 (261)
T ss_dssp S
T ss_pred C
Confidence 4
No 107
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=23.14 E-value=10 Score=29.18 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=38.6
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCE
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPI 314 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~ 314 (352)
++..+.++|+-++=|+.++.|...+.|+|.|-+...|=..-.+...++.++.+..+
T Consensus 39 vis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~v 94 (100)
T 2qsw_A 39 IISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVET 94 (100)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEE
Confidence 56667788999999999999999999999887743221111223445556666544
No 108
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=23.05 E-value=2.5e+02 Score=24.94 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhcC--CCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCC-CEEEEeCCCCCC
Q 018685 251 EYLKKLDEALEVAGHTFD--PELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNI-PIVMLTSGGYMK 324 (352)
Q Consensus 251 ~yl~~~~~~l~p~~~~f~--PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~-~~v~vleGGY~~ 324 (352)
.+...+.+.+..++++|+ |+.|++..+ ..|.+. .+...+....+.+.+..++.+. .+|++.+.+|+.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~el~-----NEP~~~--~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGS--WDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCS--SCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCC--CChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 445556666666777775 445555444 667764 4554444444456666666543 345554445654
No 109
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=22.89 E-value=96 Score=28.32 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY 322 (352)
+.++...|++.+ |-+++|+-..||+-.|--+..+ .+-...+.+.+..+. +.|.++|+|.+||-
T Consensus 17 ~~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~---------~~~~~~~~~~i~~l~-~~G~~vViVhGgG~ 79 (298)
T 2rd5_A 17 PDYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTS---------PELKSSVVSDLVLLA-CVGLRPILVHGGGP 79 (298)
T ss_dssp -CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHC---------HHHHHHHHHHHHHHH-HTTCEEEEEECCHH
T ss_pred hHHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCC---------hhHHHHHHHHHHHHH-HCCCCEEEEECCcH
Confidence 347888898886 4569999999999988554432 333445555555443 34778888888854
No 110
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=22.87 E-value=1.2e+02 Score=26.92 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=29.1
Q ss_pred HHHhhcCCCEEEEE---cCCCCCCCCCCCCCcCCH-HHHHHHHHHHHHHHhhCCCCEEEE
Q 018685 262 VAGHTFDPELVIYN---AGTDILEGDPLGMLKISP-DGIAARDEKTFRFARSRNIPIVML 317 (352)
Q Consensus 262 p~~~~f~PdlIvvs---aG~D~~~~Dplg~~~lt~-~~y~~~~~~l~~~a~~~~~~~v~v 317 (352)
......+|++||+- +..|. .| .+.. ....++.+.|.+++++.+.+++++
T Consensus 141 a~~~~~~p~llilDept~~~~~--~~-----~~d~~~~~~~i~~~L~~la~~~~~~vi~v 193 (296)
T 1cr0_A 141 YMRSGLGCDVIILDHISIVVSA--SG-----ESDERKMIDNLMTKLKGFAKSTGVVLVVI 193 (296)
T ss_dssp HHHHTTCCSEEEEEEEC------------------CHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHhcCCCEEEEcCccccCCC--CC-----CCCHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 33456799999982 21111 00 0233 556677788889998888888876
No 111
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=22.76 E-value=2e+02 Score=26.04 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCC
Q 018685 248 TTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGY 322 (352)
Q Consensus 248 ~d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleGGY 322 (352)
...++.+.|.+.+. -+++|+-..||+-.|--+..+ .+-...+.+.+..+. +.|.++|+|.+||-
T Consensus 5 ~~~~~~~~~~~a~p-yi~~~~~k~iViKlGGs~l~~---------~~~~~~~~~~i~~l~-~~G~~vViVhGgG~ 68 (299)
T 2ap9_A 5 PTHIKAQVLAEALP-WLKQLHGKVVVVKYGGNAMTD---------DTLRRAFAADMAFLR-NCGIHPVVVHGGGP 68 (299)
T ss_dssp CHHHHHHHHHHHHH-HHHHHTTCEEEEEECTHHHHS---------HHHHHHHHHHHHHHH-TTTCEEEEEECCSH
T ss_pred ChhhHHHHHHHHHH-HHHHhCCCeEEEEECchhhCC---------chHHHHHHHHHHHHH-HCCCcEEEEECCcH
Confidence 45788888988864 559999999999888554432 233444555554442 34678888888864
No 112
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*
Probab=22.54 E-value=1.7e+02 Score=27.92 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHhh--------cC--CCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhC--CCCEE
Q 018685 248 TTNEYLKKLDEALEVAGHT--------FD--PELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSR--NIPIV 315 (352)
Q Consensus 248 ~d~~yl~~~~~~l~p~~~~--------f~--PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~--~~~~v 315 (352)
+|+.+.+.+.+.+..++++ |+ |-++.++.+ ..|-..-..+.+.+....+.+.+.+++. +-+|+
T Consensus 147 ~dp~~~~~~~~~~~~l~~r~N~~tG~~y~~~p~I~~w~l~-----NEp~~~~~~~~~~~~~w~~~~~~~IR~~Dp~~lVt 221 (383)
T 3pzg_A 147 RDERIKEEYKKYVSFLINHVNVYTGVPYREEPTIMAWELA-----NELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVA 221 (383)
T ss_dssp HCHHHHHHHHHHHHHHHTCBCTTTCCBGGGCTTEEEEESC-----BTCCCTTCTTSHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred CCHHHHHHHHHHHHHHHhhhccccCcccCCCCcEEEEEec-----CCCCcccCccHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 4678899999999999988 64 779999887 3333221123344444444555666654 23344
Q ss_pred EEeCCCCC
Q 018685 316 MLTSGGYM 323 (352)
Q Consensus 316 ~vleGGY~ 323 (352)
+-.||.|.
T Consensus 222 ~G~~g~~~ 229 (383)
T 3pzg_A 222 VGDEGFFS 229 (383)
T ss_dssp CCCCCCCB
T ss_pred Eccccccc
Confidence 44567665
No 113
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=22.49 E-value=2.5e+02 Score=24.05 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHH-HHHHHHHHHHHhhCCCCEE
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGI-AARDEKTFRFARSRNIPIV 315 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y-~~~~~~l~~~a~~~~~~~v 315 (352)
|++.++.+++.+.- .++...+.|++..|.+.. -. -+.+ .+.-+.+.+.|++.|+++.
T Consensus 80 ~~~~~~~~~~~i~~-a~~lG~~~v~~~~g~~~~-----~~----~~~~~~~~l~~l~~~a~~~gv~l~ 137 (272)
T 2q02_A 80 TEEVVKKTEGLLRD-AQGVGARALVLCPLNDGT-----IV----PPEVTVEAIKRLSDLFARYDIQGL 137 (272)
T ss_dssp CHHHHHHHHHHHHH-HHHHTCSEEEECCCCSSB-----CC----CHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHH-HHHhCCCEEEEccCCCch-----hH----HHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45666777776654 488999999998886531 11 1222 3333446667777776543
No 114
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*
Probab=22.45 E-value=2.1e+02 Score=24.95 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 018685 246 GTTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 246 g~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+.=+.+.+..+.+.+..+-++ .-..||+ ++|.|...-..... -....+......+......+..|+|+..
T Consensus 26 Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~kPvIAav 102 (233)
T 3r6h_A 26 NVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEA--KPAIDMLRGGFELSYRLLSYPKPVVIAC 102 (233)
T ss_dssp CCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---C--HHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccCh--HHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344667888888888776544 4456655 45655432111000 0011222222334444456788999876
Q ss_pred CC
Q 018685 319 SG 320 (352)
Q Consensus 319 eG 320 (352)
.|
T Consensus 103 ~G 104 (233)
T 3r6h_A 103 TG 104 (233)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 115
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=22.29 E-value=3.8e+02 Score=23.45 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Q 018685 247 TTTNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 247 ~~d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vle 319 (352)
.=+.+.+..+.+.+..+-++-....||+ ++|.|...-.. ..-....+....+.+++....+..|+|+...
T Consensus 23 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~---~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 99 (254)
T 3gow_A 23 AITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGD---RKPDYEAHLRRYNRVVEALSGLEKPLVVAVN 99 (254)
T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTT---SCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCCChHHHhh---cchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3466788888888877644333445555 33555432211 1112222222223344444567889988766
Q ss_pred C
Q 018685 320 G 320 (352)
Q Consensus 320 G 320 (352)
|
T Consensus 100 G 100 (254)
T 3gow_A 100 G 100 (254)
T ss_dssp S
T ss_pred C
Confidence 4
No 116
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=21.84 E-value=2.7e+02 Score=21.30 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEEeCC--C--CCCC-----
Q 018685 255 KLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSG--G--YMKS----- 325 (352)
Q Consensus 255 ~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~v~vleG--G--Y~~~----- 325 (352)
.+..++..+.++|+.++.|+-.-.|-.. +-...+.++. -.+|++++... | |...
T Consensus 39 ~~~p~l~~~A~~~~gk~~f~~vd~d~~~-~~a~~~gi~~----------------~~iPtl~i~~~~~g~~~~~~~~g~~ 101 (133)
T 2djk_A 39 ELSDKLKPIAEAQRGVINFGTIDAKAFG-AHAGNLNLKT----------------DKFPAFAIQEVAKNQKFPFDQEKEI 101 (133)
T ss_dssp HHHHHHHHHHHSSTTTSEEEEECTTTTG-GGTTTTTCCS----------------SSSSEEEEECTTTCCBCCCCSSSCC
T ss_pred HHHHHHHHHHHHhCCeEEEEEEchHHhH-HHHHHcCCCc----------------ccCCEEEEEecCcCcccCCCCcccc
Confidence 5566777788999999888888777432 2333444421 13798888864 7 5442
Q ss_pred hHHHHHHHHHHHhhcCCCC
Q 018685 326 SARVIANSVENLSRKGLIN 344 (352)
Q Consensus 326 ~~~~~~~~v~~l~~~~l~~ 344 (352)
....+.+-+..++...|.+
T Consensus 102 ~~~~l~~fi~~~l~Gkl~p 120 (133)
T 2djk_A 102 TFEAIKAFVDDFVAGKIEP 120 (133)
T ss_dssp CHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHHHcCCcCc
Confidence 2567777788888877764
No 117
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=21.70 E-value=79 Score=28.13 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCC
Q 018685 257 DEALEVAGHTFDPELVIYNAGTD 279 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D 279 (352)
.+.|..++++++||+|+.-.+.|
T Consensus 86 ~~~l~~~ir~~~PdvV~t~~~~d 108 (242)
T 2ixd_A 86 IREIVKVIRTYKPKLVFAPYYED 108 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCS
T ss_pred HHHHHHHHHHcCCCEEEECCCCC
Confidence 34555667899999998755544
No 118
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=21.56 E-value=2.3e+02 Score=25.30 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEE-------EcCCCCCCCCCCCCCcCCHHH---HHHHHHHHHHHHhhCCCCEEEEe
Q 018685 249 TNEYLKKLDEALEVAGHTFDPELVIY-------NAGTDILEGDPLGMLKISPDG---IAARDEKTFRFARSRNIPIVMLT 318 (352)
Q Consensus 249 d~~yl~~~~~~l~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~~---y~~~~~~l~~~a~~~~~~~v~vl 318 (352)
+.+.+..+.+.+..+-++-+...||+ |+|.|.-.-. .. -+.+. +......++.....+..|+|+..
T Consensus 49 ~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 124 (263)
T 2j5g_A 49 TGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLG---DV-TNPREWDKTYWEGKKVLQNLLDIEVPVISAV 124 (263)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGC---CT-TSHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHh---cc-CCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45677777777776644434456665 6788864311 11 02222 21112233333456788998876
Q ss_pred CC
Q 018685 319 SG 320 (352)
Q Consensus 319 eG 320 (352)
.|
T Consensus 125 ~G 126 (263)
T 2j5g_A 125 NG 126 (263)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 119
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=21.33 E-value=56 Score=30.97 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=12.0
Q ss_pred CeEEEEeccCcCCchh
Q 018685 191 SRVMIIDLDAHQGNGH 206 (352)
Q Consensus 191 ~rV~IiD~DvHHGnGT 206 (352)
+||++||+|. +||-+
T Consensus 147 ~rVlliD~D~-~~~l~ 161 (403)
T 3ez9_A 147 LRILVIDLDP-QASST 161 (403)
T ss_dssp CCEEEEEESS-SSGGG
T ss_pred CeEEEEeCCC-CCChh
Confidence 6999999999 56533
No 120
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=21.15 E-value=11 Score=28.94 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCE
Q 018685 259 ALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPI 314 (352)
Q Consensus 259 ~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~~~~~l~~~a~~~~~~~ 314 (352)
++..+.++|+-++=|+.++.|...+.|+|.|-+...|=..-.+...++.++.+..+
T Consensus 39 vis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~v 94 (101)
T 2qrr_A 39 LMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKV 94 (101)
T ss_dssp HHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence 56667789999999999999999999999887743221111223445556666544
No 121
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=20.97 E-value=63 Score=28.37 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCC
Q 018685 257 DEALEVAGHTFDPELVIYNAGTDI 280 (352)
Q Consensus 257 ~~~l~p~~~~f~PdlIvvsaG~D~ 280 (352)
.+.|..++++++||+|+.-.+.|.
T Consensus 84 ~~~l~~~ir~~~P~~V~t~~~~d~ 107 (227)
T 1uan_A 84 RLKLAQALRRLRPRVVFAPLEADR 107 (227)
T ss_dssp HHHHHHHHHHHCEEEEEEECSCCS
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCC
Confidence 345556778999999987655443
No 122
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=20.93 E-value=3.9e+02 Score=24.63 Aligned_cols=74 Identities=11% Similarity=0.006 Sum_probs=25.0
Q ss_pred cCCchhhhhhcCCCcEEEEEecCCCCCCCCc---c-cC--CcccccccCCCCCChHHHHHHHHHHHHHHHhhcCCCEEEE
Q 018685 201 HQGNGHEKDFSSDSRVYILDMFNPGIYPRDY---E-AR--RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIY 274 (352)
Q Consensus 201 HHGnGTq~if~~d~~Vl~iSiH~~~~yP~~g---~-~~--~~~~~NvPL~~g~~d~~yl~~~~~~l~p~~~~f~PdlIvv 274 (352)
||-+||-..=..-|.-++-..+...+=.+.. . .+ ...++|=|=..+.=+.+.+..|.+.+..+-.+-...+||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVl 85 (333)
T 3njd_A 6 HHHMGTLEAQTQGPGSMTHAIRPVDFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILV 85 (333)
T ss_dssp -----------------------CCTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccchhhcccCCCcccCCCCCCCCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 5566666655555555554444321111100 0 01 1134555543455567888888888877644334456665
No 123
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=20.91 E-value=1.1e+02 Score=27.97 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=27.6
Q ss_pred cccCCCCC-Ch-HHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCC
Q 018685 240 KVEVVSGT-TT-NEYLKKLDEALEVAGHTFDPELVIYNAGTDILEG 283 (352)
Q Consensus 240 NvPL~~g~-~d-~~yl~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~ 283 (352)
||+++++. .| ++....+++.|.. ....|++++..|-|+|..
T Consensus 124 ~i~~~~~~~~d~~~~a~~Ye~~i~~---~~~~Dl~lLGmG~DGH~a 166 (289)
T 3hn6_A 124 NINILNGNASNLKKECEEYEKKIKS---FGGIMLFVGGIGPDGHIA 166 (289)
T ss_dssp GEECCCTTCSSHHHHHHHHHHHHHH---TTSCSEEEEECCTTSCBT
T ss_pred HeecCCCCCCCHHHHHHHHHHHHhh---cCCCCEEEEccCCCCcee
Confidence 56666664 23 4555556655432 246799999999999987
No 124
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=20.29 E-value=4.4e+02 Score=23.15 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCcCCchhhhhhcCCCcEEEEEecCCCCCCCCcccCCcccccccCCCCCCh-HHHHHHH
Q 018685 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTT-NEYLKKL 256 (352)
Q Consensus 178 AIAa~~l~~~~~~~rV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~~g~~~~~~~~NvPL~~g~~d-~~yl~~~ 256 (352)
|||.+.+. .| -+|+++|.|- +..+++-.+.+++.++. -..+| ++...+
T Consensus 17 aia~~la~--~G-a~V~~~~~~~---~~~~~~~~~~~~~~~~~------------------------~Dv~~~~~v~~~- 65 (247)
T 3ged_A 17 QICLDFLE--AG-DKVCFIDIDE---KRSADFAKERPNLFYFH------------------------GDVADPLTLKKF- 65 (247)
T ss_dssp HHHHHHHH--TT-CEEEEEESCH---HHHHHHHTTCTTEEEEE------------------------CCTTSHHHHHHH-
T ss_pred HHHHHHHH--CC-CEEEEEeCCH---HHHHHHHHhcCCEEEEE------------------------ecCCCHHHHHHH-
Confidence 55555443 35 4899999873 33444444444443321 12333 333333
Q ss_pred HHHHHHHHhhc-CCCEEEEEcCCCCCCCCCCCCCcCCHHHHHH-----------HHHHHHHHHhhCCCCEEEEeC
Q 018685 257 DEALEVAGHTF-DPELVIYNAGTDILEGDPLGMLKISPDGIAA-----------RDEKTFRFARSRNIPIVMLTS 319 (352)
Q Consensus 257 ~~~l~p~~~~f-~PdlIvvsaG~D~~~~Dplg~~~lt~~~y~~-----------~~~~l~~~a~~~~~~~v~vle 319 (352)
+..+.++| +.|++|-.||.- ...|+- .++.+.|.+ +++.+.....+.++++|.+-.
T Consensus 66 ---v~~~~~~~g~iDiLVNNAG~~--~~~~~~--~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS 133 (247)
T 3ged_A 66 ---VEYAMEKLQRIDVLVNNACRG--SKGILS--SLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIAS 133 (247)
T ss_dssp ---HHHHHHHHSCCCEEEECCCCC--CCCGGG--TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred ---HHHHHHHcCCCCEEEECCCCC--CCCCcc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEee
Confidence 44445666 569999999963 223333 455555543 344444443445677776543
No 125
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=20.21 E-value=68 Score=29.67 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=15.0
Q ss_pred HcCCCeEEEEeccCcCCchhhhhhc
Q 018685 187 QLNISRVMIIDLDAHQGNGHEKDFS 211 (352)
Q Consensus 187 ~~~~~rV~IiD~DvHHGnGTq~if~ 211 (352)
+.| +||++||.|..| .....|.
T Consensus 45 ~~G-~rVllvD~D~~~--~l~~~l~ 66 (329)
T 2woo_A 45 KVR-SSVLLISTDPAH--NLSDAFG 66 (329)
T ss_dssp TSS-SCEEEEECCTTC--HHHHHHS
T ss_pred HCC-CeEEEEECCCCc--CHHHHhC
Confidence 335 699999999973 3444453
Done!