BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018686
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 220 GCVAEVNELILQYNTMLEERIINLNSELPNAHIIFC 255
G +VNEL LQ+ +E +++ NSEL H +C
Sbjct: 396 GLAKQVNELGLQFGLWVEPEMVSPNSELYRKHPDWC 431
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 220 GCVAEVNELILQYNTMLEERIINLNSELPNAHIIFC 255
G +VNEL LQ+ +E +++ NSEL H +C
Sbjct: 396 GLAKQVNELGLQFGLWVEPEMVSPNSELYRKHPDWC 431
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 220 GCVAEVNELILQYNTMLEERIINLNSELPNAHIIFC 255
G +VNEL LQ+ +E +++ NSEL H +C
Sbjct: 396 GLAKQVNELGLQFGLWVEPEMVSPNSELYRKHPDWC 431
>pdb|4FNP|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNS|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
Length = 729
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 220 GCVAEVNELILQYNTMLEERIINLNSELPNAHIIFC 255
G +VNEL LQ+ +E +++ NSEL H +C
Sbjct: 396 GLAKQVNELGLQFGLWVEPEMVSPNSELYRKHPDWC 431
>pdb|4FNQ|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agab From
Geobacillus Stearothermophilus
Length = 729
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 220 GCVAEVNELILQYNTMLEERIINLNSELPNAHIIFC 255
G +VNEL +Q+ +E +++ NSEL H +C
Sbjct: 396 GLAKQVNELGMQFGLWVEPEMVSPNSELYRKHPDWC 431
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,578,497
Number of Sequences: 62578
Number of extensions: 440086
Number of successful extensions: 782
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 8
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)