Query 018687
Match_columns 352
No_of_seqs 413 out of 2611
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2338 Transcriptional effect 100.0 5.5E-30 1.2E-34 241.5 15.4 309 1-347 179-495 (495)
2 PLN03144 Carbon catabolite rep 99.9 3E-23 6.6E-28 205.7 17.0 137 1-143 315-481 (606)
3 COG5239 CCR4 mRNA deadenylase, 99.5 5.2E-14 1.1E-18 128.7 8.2 129 1-139 90-265 (378)
4 KOG0620 Glucose-repressible al 99.4 1.2E-13 2.6E-18 130.4 5.5 130 1-141 78-246 (361)
5 COG5126 FRQ1 Ca2+-binding prot 99.4 7E-13 1.5E-17 110.2 8.8 85 191-281 71-156 (160)
6 cd05022 S-100A13 S-100A13: S-1 99.4 9.5E-13 2.1E-17 99.6 7.2 69 208-282 5-76 (89)
7 KOG0027 Calmodulin and related 99.3 4.3E-12 9.4E-17 106.4 9.0 84 192-281 61-149 (151)
8 TIGR03395 sphingomy sphingomye 99.3 4.5E-11 9.8E-16 110.5 14.9 101 22-138 89-199 (283)
9 PRK11756 exonuclease III; Prov 99.3 3.6E-11 7.7E-16 110.5 14.2 155 6-182 47-235 (268)
10 COG3568 ElsH Metal-dependent h 99.3 1.2E-11 2.7E-16 110.5 8.7 96 20-138 88-186 (259)
11 cd05027 S-100B S-100B: S-100B 99.3 1.6E-11 3.6E-16 92.9 7.8 68 208-281 5-79 (88)
12 PF13499 EF-hand_7: EF-hand do 99.3 1.3E-11 2.9E-16 88.3 6.5 62 212-279 1-66 (66)
13 TIGR00195 exoDNase_III exodeox 99.2 2.6E-10 5.6E-15 103.9 14.4 153 5-182 46-223 (254)
14 KOG3873 Sphingomyelinase famil 99.2 4.6E-11 9.9E-16 109.3 6.5 155 11-183 67-257 (422)
15 cd05026 S-100Z S-100Z: S-100Z 99.1 1.7E-10 3.6E-15 88.5 8.0 74 208-283 7-83 (93)
16 cd05029 S-100A6 S-100A6: S-100 99.1 1.7E-10 3.7E-15 87.4 7.8 71 208-283 7-81 (88)
17 PRK05421 hypothetical protein; 99.1 5.7E-10 1.2E-14 102.3 12.1 102 21-143 105-212 (263)
18 KOG0028 Ca2+-binding protein ( 99.1 3.1E-10 6.8E-15 92.5 8.9 83 193-281 87-170 (172)
19 cd05025 S-100A1 S-100A1: S-100 99.1 3E-10 6.5E-15 87.0 8.1 75 207-283 5-82 (92)
20 cd05031 S-100A10_like S-100A10 99.1 2.8E-10 6.2E-15 87.5 7.8 71 209-285 6-83 (94)
21 smart00027 EH Eps15 homology d 99.1 2.6E-10 5.7E-15 88.0 7.3 66 208-281 7-72 (96)
22 TIGR00633 xth exodeoxyribonucl 99.1 4E-09 8.7E-14 95.9 14.3 156 5-182 47-227 (255)
23 KOG0037 Ca2+-binding protein, 99.1 2.9E-10 6.3E-15 97.6 6.2 100 210-315 56-160 (221)
24 KOG0027 Calmodulin and related 99.0 5E-10 1.1E-14 93.9 7.5 67 209-281 6-72 (151)
25 KOG0030 Myosin essential light 99.0 9.9E-10 2.2E-14 87.5 8.5 116 131-280 31-150 (152)
26 cd00052 EH Eps15 homology doma 99.0 6.3E-10 1.4E-14 79.6 6.8 60 214-281 2-61 (67)
27 COG0708 XthA Exonuclease III [ 99.0 2.2E-09 4.8E-14 96.3 11.2 157 3-182 44-228 (261)
28 KOG0031 Myosin regulatory ligh 99.0 1.6E-09 3.5E-14 87.8 8.8 84 191-280 80-164 (171)
29 PTZ00297 pantothenate kinase; 99.0 4.8E-09 1E-13 115.0 14.1 115 3-128 72-207 (1452)
30 cd05023 S-100A11 S-100A11: S-1 99.0 1.9E-09 4.2E-14 81.7 7.9 76 208-283 6-82 (89)
31 cd00213 S-100 S-100: S-100 dom 99.0 1.8E-09 4E-14 81.9 7.4 72 208-281 5-79 (88)
32 PF13833 EF-hand_8: EF-hand do 98.9 1.9E-09 4.2E-14 73.8 6.0 49 227-280 3-52 (54)
33 COG5126 FRQ1 Ca2+-binding prot 98.9 2.5E-09 5.5E-14 89.0 6.2 97 206-309 15-122 (160)
34 smart00476 DNaseIc deoxyribonu 98.9 1.7E-08 3.8E-13 92.3 12.3 111 9-137 78-200 (276)
35 PRK13911 exodeoxyribonuclease 98.9 3.7E-08 8.1E-13 89.4 13.6 155 7-183 46-223 (250)
36 PTZ00183 centrin; Provisional 98.8 1.6E-08 3.5E-13 84.9 9.4 83 193-281 71-154 (158)
37 PF03372 Exo_endo_phos: Endonu 98.8 3.4E-08 7.4E-13 87.8 12.1 99 23-131 73-171 (249)
38 cd00051 EFh EF-hand, calcium b 98.8 2E-08 4.4E-13 69.6 7.7 61 213-279 2-62 (63)
39 PRK15251 cytolethal distending 98.8 6.5E-08 1.4E-12 87.4 12.4 104 9-138 101-206 (271)
40 KOG0034 Ca2+/calmodulin-depend 98.8 1.3E-08 2.8E-13 87.6 7.2 86 192-282 84-176 (187)
41 cd05030 calgranulins Calgranul 98.8 2.1E-08 4.5E-13 76.1 7.0 69 208-282 5-80 (88)
42 PTZ00184 calmodulin; Provision 98.8 4.7E-08 1E-12 81.0 9.3 64 211-280 84-147 (149)
43 cd00252 SPARC_EC SPARC_EC; ext 98.7 3.9E-08 8.5E-13 78.1 7.2 62 209-280 46-107 (116)
44 KOG0028 Ca2+-binding protein ( 98.7 5E-08 1.1E-12 79.8 7.8 68 208-281 30-97 (172)
45 KOG0041 Predicted Ca2+-binding 98.7 4.6E-08 9.9E-13 82.7 7.4 69 207-282 95-163 (244)
46 PTZ00184 calmodulin; Provision 98.7 2.4E-08 5.1E-13 82.8 5.5 67 208-280 8-74 (149)
47 PF14658 EF-hand_9: EF-hand do 98.7 8.6E-08 1.9E-12 67.3 6.5 61 215-280 2-63 (66)
48 KOG0037 Ca2+-binding protein, 98.6 2.6E-07 5.6E-12 79.6 9.7 66 211-282 124-189 (221)
49 PTZ00183 centrin; Provisional 98.6 2E-07 4.4E-12 78.1 8.3 66 209-280 15-80 (158)
50 KOG0031 Myosin regulatory ligh 98.5 2.6E-07 5.7E-12 75.1 7.4 66 206-281 27-92 (171)
51 cd05024 S-100A10 S-100A10: A s 98.4 1.2E-06 2.6E-11 66.0 8.2 70 209-282 6-77 (91)
52 KOG0044 Ca2+ sensor (EF-Hand s 98.4 6.8E-07 1.5E-11 77.1 7.2 89 192-281 81-175 (193)
53 COG3021 Uncharacterized protei 98.4 2.2E-06 4.9E-11 78.4 9.8 95 71-182 186-282 (309)
54 KOG0038 Ca2+-binding kinase in 98.3 2.6E-06 5.7E-11 68.6 8.5 67 211-282 108-178 (189)
55 PF00036 EF-hand_1: EF hand; 98.3 1.2E-06 2.5E-11 51.7 3.8 27 254-280 1-27 (29)
56 KOG0036 Predicted mitochondria 98.3 1.8E-06 4E-11 80.8 6.7 99 209-312 12-115 (463)
57 KOG0030 Myosin essential light 98.2 1.5E-06 3.3E-11 69.6 4.4 67 209-281 9-77 (152)
58 KOG0036 Predicted mitochondria 98.2 6.3E-06 1.4E-10 77.3 9.1 67 208-280 79-145 (463)
59 PF00036 EF-hand_1: EF hand; 98.2 1.4E-06 3E-11 51.3 2.6 29 212-241 1-29 (29)
60 PLN02964 phosphatidylserine de 98.1 7.5E-06 1.6E-10 82.8 7.5 64 212-281 180-243 (644)
61 PF12763 EF-hand_4: Cytoskelet 98.1 1.2E-05 2.5E-10 62.7 6.6 64 208-280 7-70 (104)
62 PLN02964 phosphatidylserine de 98.1 1.1E-05 2.4E-10 81.6 7.9 67 206-281 138-207 (644)
63 KOG0377 Protein serine/threoni 98.0 1.1E-05 2.5E-10 76.0 7.0 70 209-280 545-614 (631)
64 KOG0044 Ca2+ sensor (EF-Hand s 98.0 1.5E-05 3.4E-10 68.7 7.3 68 208-281 61-128 (193)
65 PF13405 EF-hand_6: EF-hand do 98.0 5.7E-06 1.2E-10 49.6 2.6 30 212-242 1-31 (31)
66 KOG2756 Predicted Mg2+-depende 97.9 2.6E-05 5.7E-10 69.3 6.5 137 10-167 153-290 (349)
67 PF13202 EF-hand_5: EF hand; P 97.6 8.3E-05 1.8E-09 42.1 3.6 25 255-279 1-25 (25)
68 PF14788 EF-hand_10: EF hand; 97.6 0.00015 3.3E-09 48.1 5.1 47 229-280 2-48 (51)
69 KOG0046 Ca2+-binding actin-bun 97.6 0.00014 3.1E-09 70.2 6.6 71 207-281 15-85 (627)
70 PRK12309 transaldolase/EF-hand 97.6 0.00011 2.5E-09 70.5 5.8 51 211-280 334-384 (391)
71 PF13202 EF-hand_5: EF hand; P 97.5 6.1E-05 1.3E-09 42.6 2.1 25 213-238 1-25 (25)
72 COG2374 Predicted extracellula 97.5 0.00037 8.1E-09 70.3 8.0 154 10-181 553-731 (798)
73 PF10591 SPARC_Ca_bdg: Secrete 97.4 0.00011 2.4E-09 58.2 2.9 62 208-277 51-112 (113)
74 KOG4065 Uncharacterized conser 97.3 0.00094 2E-08 51.8 6.6 63 215-278 71-142 (144)
75 KOG4223 Reticulocalbin, calume 97.2 0.00043 9.3E-09 63.4 4.6 63 214-281 166-228 (325)
76 PF13405 EF-hand_6: EF-hand do 97.1 0.00067 1.5E-08 40.4 3.6 27 254-280 1-27 (31)
77 smart00128 IPPc Inositol polyp 96.8 0.0046 9.9E-08 58.0 8.3 97 21-130 90-195 (310)
78 KOG0040 Ca2+-binding actin-bun 96.8 0.0027 5.8E-08 68.2 6.6 68 211-282 2253-2325(2399)
79 KOG4223 Reticulocalbin, calume 96.8 0.0015 3.2E-08 60.0 4.0 82 190-277 215-301 (325)
80 KOG4251 Calcium binding protei 96.6 0.00098 2.1E-08 58.6 1.6 66 211-280 101-167 (362)
81 smart00054 EFh EF-hand, calciu 96.3 0.0045 9.9E-08 34.8 2.9 27 213-240 2-28 (29)
82 KOG2243 Ca2+ release channel ( 96.2 0.0086 1.9E-07 63.7 6.2 69 206-281 4052-4120(5019)
83 smart00054 EFh EF-hand, calciu 96.2 0.0069 1.5E-07 34.1 3.1 27 254-280 1-27 (29)
84 PF14529 Exo_endo_phos_2: Endo 96.1 0.0083 1.8E-07 47.3 4.4 71 99-183 15-97 (119)
85 KOG2643 Ca2+ binding protein, 96.0 0.0068 1.5E-07 57.8 3.8 99 175-281 203-314 (489)
86 PLN03191 Type I inositol-1,4,5 95.9 0.019 4.1E-07 57.5 6.7 94 25-129 376-482 (621)
87 PF13833 EF-hand_8: EF-hand do 95.9 0.012 2.6E-07 39.6 3.9 32 208-240 22-53 (54)
88 KOG0034 Ca2+/calmodulin-depend 95.9 0.044 9.5E-07 47.4 8.2 68 209-281 64-132 (187)
89 PF09279 EF-hand_like: Phospho 95.8 0.021 4.5E-07 42.4 5.1 66 212-282 1-70 (83)
90 COG5239 CCR4 mRNA deadenylase, 95.6 0.0044 9.6E-08 57.7 1.0 64 74-143 139-202 (378)
91 PF13499 EF-hand_7: EF-hand do 95.4 0.02 4.4E-07 40.2 3.7 52 186-238 14-66 (66)
92 PTZ00312 inositol-1,4,5-tripho 95.3 0.085 1.8E-06 48.1 7.8 61 72-138 79-151 (356)
93 KOG0566 Inositol-1,4,5-triphos 94.9 0.067 1.4E-06 55.7 6.8 107 22-141 626-742 (1080)
94 KOG1029 Endocytic adaptor prot 94.7 0.041 8.8E-07 56.0 4.6 64 209-280 193-256 (1118)
95 PF05517 p25-alpha: p25-alpha 93.8 0.22 4.7E-06 41.7 6.6 63 216-281 7-69 (154)
96 KOG1955 Ral-GTPase effector RA 93.7 0.12 2.6E-06 50.2 5.5 64 209-280 229-292 (737)
97 KOG2562 Protein phosphatase 2 93.1 0.1 2.2E-06 50.4 3.9 102 171-277 309-420 (493)
98 cd05022 S-100A13 S-100A13: S-1 92.9 0.36 7.9E-06 36.4 5.9 31 211-242 47-77 (89)
99 KOG0377 Protein serine/threoni 92.8 0.67 1.5E-05 44.6 8.7 69 210-279 463-573 (631)
100 KOG2643 Ca2+ binding protein, 92.4 0.06 1.3E-06 51.5 1.3 53 219-279 207-259 (489)
101 KOG4666 Predicted phosphate ac 92.2 0.17 3.6E-06 46.8 3.9 65 210-281 295-359 (412)
102 cd05023 S-100A11 S-100A11: S-1 92.2 0.47 1E-05 35.8 5.7 52 190-242 29-82 (89)
103 cd05030 calgranulins Calgranul 91.9 0.34 7.3E-06 36.4 4.8 32 210-242 50-81 (88)
104 KOG1976 Inositol polyphosphate 91.9 0.55 1.2E-05 43.1 6.7 65 72-142 168-244 (391)
105 PF08726 EFhand_Ca_insen: Ca2+ 91.8 0.031 6.7E-07 39.9 -1.0 56 210-279 5-67 (69)
106 KOG1029 Endocytic adaptor prot 91.7 0.61 1.3E-05 47.9 7.4 49 223-279 27-75 (1118)
107 KOG3555 Ca2+-binding proteogly 91.4 0.29 6.3E-06 45.5 4.6 62 210-281 249-310 (434)
108 cd05026 S-100Z S-100Z: S-100Z 91.4 0.74 1.6E-05 34.9 6.2 33 209-242 51-83 (93)
109 cd05024 S-100A10 S-100A10: A s 91.2 0.66 1.4E-05 35.1 5.5 52 190-242 25-78 (91)
110 KOG4578 Uncharacterized conser 91.2 0.45 9.9E-06 44.0 5.5 92 181-280 289-397 (421)
111 KOG0042 Glycerol-3-phosphate d 91.2 0.31 6.6E-06 48.4 4.7 65 211-281 593-657 (680)
112 PF14788 EF-hand_10: EF hand; 90.8 0.53 1.2E-05 31.3 4.2 34 207-241 17-50 (51)
113 cd00051 EFh EF-hand, calcium b 90.7 0.46 1E-05 31.6 4.2 31 207-238 32-62 (63)
114 cd05029 S-100A6 S-100A6: S-100 90.6 0.69 1.5E-05 34.7 5.3 33 209-242 49-81 (88)
115 cd05031 S-100A10_like S-100A10 89.2 1.3 2.8E-05 33.5 5.9 34 209-243 49-82 (94)
116 KOG2562 Protein phosphatase 2 88.5 0.6 1.3E-05 45.2 4.3 57 216-281 283-343 (493)
117 KOG3866 DNA-binding protein of 88.1 0.69 1.5E-05 42.5 4.2 63 215-279 248-322 (442)
118 cd00252 SPARC_EC SPARC_EC; ext 88.0 0.54 1.2E-05 37.4 3.1 29 210-239 79-107 (116)
119 KOG0751 Mitochondrial aspartat 87.4 1.2 2.6E-05 43.6 5.5 84 192-281 91-175 (694)
120 cd05025 S-100A1 S-100A1: S-100 87.0 2.3 5E-05 31.9 6.1 33 209-242 50-82 (92)
121 cd05027 S-100B S-100B: S-100B 86.7 2.7 5.8E-05 31.5 6.2 32 210-242 50-81 (88)
122 smart00027 EH Eps15 homology d 86.7 0.95 2.1E-05 34.4 3.8 28 254-281 11-38 (96)
123 cd00052 EH Eps15 homology doma 86.6 2.6 5.6E-05 29.0 5.8 32 209-241 31-62 (67)
124 PF08976 DUF1880: Domain of un 86.4 0.55 1.2E-05 36.8 2.3 33 248-280 2-34 (118)
125 KOG0035 Ca2+-binding actin-bun 86.3 2 4.4E-05 45.3 6.9 69 207-281 743-816 (890)
126 KOG4251 Calcium binding protei 85.0 1.6 3.5E-05 38.8 4.8 61 214-280 284-344 (362)
127 cd00213 S-100 S-100: S-100 dom 84.1 3.9 8.5E-05 30.2 6.0 32 210-242 50-81 (88)
128 COG5411 Phosphatidylinositol 5 84.0 2.5 5.5E-05 40.9 5.9 92 25-128 121-218 (460)
129 PRK12309 transaldolase/EF-hand 80.8 2.4 5.2E-05 41.1 4.6 50 248-300 329-378 (391)
130 PF05042 Caleosin: Caleosin re 80.1 6.8 0.00015 33.2 6.5 72 211-283 7-126 (174)
131 KOG0751 Mitochondrial aspartat 79.3 9.1 0.0002 37.7 7.9 61 211-279 73-134 (694)
132 KOG0169 Phosphoinositide-speci 76.8 4.2 9.1E-05 42.0 5.1 63 211-279 136-198 (746)
133 KOG4666 Predicted phosphate ac 75.7 5.4 0.00012 37.1 5.0 64 211-279 259-322 (412)
134 PF14658 EF-hand_9: EF-hand do 75.2 7.7 0.00017 27.4 4.6 32 209-240 33-64 (66)
135 PF01023 S_100: S-100/ICaBP ty 73.6 6 0.00013 25.5 3.5 31 210-240 5-36 (44)
136 PF14513 DAG_kinase_N: Diacylg 73.3 5.2 0.00011 32.7 3.9 47 227-280 6-59 (138)
137 KOG0041 Predicted Ca2+-binding 72.3 5.1 0.00011 34.7 3.8 28 254-281 100-127 (244)
138 PF12763 EF-hand_4: Cytoskelet 68.6 4.4 9.6E-05 31.4 2.5 32 209-241 41-72 (104)
139 KOG0998 Synaptic vesicle prote 67.8 1.9 4.2E-05 46.0 0.3 64 209-280 281-344 (847)
140 PF07499 RuvA_C: RuvA, C-termi 64.7 16 0.00036 23.7 4.2 41 231-280 3-43 (47)
141 PLN02952 phosphoinositide phos 63.5 35 0.00076 35.0 8.3 67 210-281 37-110 (599)
142 PF09069 EF-hand_3: EF-hand; 62.0 52 0.0011 24.8 7.0 66 211-281 3-75 (90)
143 KOG0038 Ca2+-binding kinase in 60.4 28 0.0006 28.7 5.6 60 215-281 75-136 (189)
144 cd07313 terB_like_2 tellurium 60.1 12 0.00025 28.6 3.4 52 227-281 14-65 (104)
145 KOG0040 Ca2+-binding actin-bun 57.2 32 0.0007 38.8 7.0 56 211-280 2334-2397(2399)
146 KOG4347 GTPase-activating prot 55.5 13 0.00028 37.9 3.6 58 211-275 555-612 (671)
147 KOG2871 Uncharacterized conser 54.5 9.9 0.00021 36.1 2.5 66 210-281 308-374 (449)
148 KOG0565 Inositol polyphosphate 54.3 37 0.00079 27.7 5.7 57 72-132 58-124 (145)
149 COG4103 Uncharacterized protei 50.8 27 0.00058 28.6 4.1 58 215-281 34-94 (148)
150 PLN02230 phosphoinositide phos 49.6 65 0.0014 33.1 7.5 67 211-281 29-102 (598)
151 KOG3555 Ca2+-binding proteogly 49.5 29 0.00063 32.8 4.6 68 209-279 209-276 (434)
152 KOG1707 Predicted Ras related/ 49.4 21 0.00045 36.2 3.9 59 211-277 315-373 (625)
153 PLN02222 phosphoinositide phos 48.9 54 0.0012 33.5 6.9 65 211-281 25-90 (581)
154 cd00086 homeodomain Homeodomai 47.4 67 0.0015 21.1 5.3 40 209-261 11-50 (59)
155 PTZ00235 DNA polymerase epsilo 46.7 44 0.00095 31.0 5.3 14 116-129 64-77 (291)
156 KOG1955 Ral-GTPase effector RA 45.6 27 0.00058 34.5 3.9 32 209-241 263-294 (737)
157 PF09068 EF-hand_2: EF hand; 44.5 1.2E+02 0.0027 24.3 7.1 92 189-280 15-124 (127)
158 PF03672 UPF0154: Uncharacteri 44.2 76 0.0017 22.3 5.0 31 227-262 30-60 (64)
159 KOG1954 Endocytosis/signaling 43.2 36 0.00078 32.7 4.3 56 212-276 445-500 (532)
160 PRK00523 hypothetical protein; 43.2 77 0.0017 22.8 4.9 42 214-262 27-68 (72)
161 PLN02228 Phosphoinositide phos 40.8 1E+02 0.0022 31.5 7.4 66 211-282 24-93 (567)
162 PF03979 Sigma70_r1_1: Sigma-7 39.0 27 0.00058 25.6 2.3 33 227-266 20-52 (82)
163 PRK01844 hypothetical protein; 36.5 1.1E+02 0.0024 21.9 4.9 42 214-262 26-67 (72)
164 PF00404 Dockerin_1: Dockerin 36.4 54 0.0012 17.5 2.5 16 221-237 1-16 (21)
165 KOG1294 Apurinic/apyrimidinic 34.8 1.6E+02 0.0035 28.0 7.3 55 73-130 167-226 (335)
166 TIGR01639 P_fal_TIGR01639 Plas 34.2 84 0.0018 21.6 4.0 31 227-262 8-38 (61)
167 KOG4004 Matricellular protein 34.1 18 0.0004 31.3 0.8 56 216-278 192-247 (259)
168 COG3763 Uncharacterized protei 34.0 1.5E+02 0.0031 21.2 5.1 42 214-262 26-67 (71)
169 KOG0373 Serine/threonine speci 32.6 1.8E+02 0.0038 25.9 6.6 37 97-137 23-62 (306)
170 KOG3449 60S acidic ribosomal p 32.2 2.3E+02 0.0049 22.2 6.4 51 215-276 5-55 (112)
171 PF10591 SPARC_Ca_bdg: Secrete 31.9 36 0.00078 26.7 2.1 24 212-236 89-112 (113)
172 PF07308 DUF1456: Protein of u 31.0 1.4E+02 0.0031 21.1 4.9 14 249-262 29-42 (68)
173 PF09279 EF-hand_like: Phospho 30.3 81 0.0018 22.8 3.7 27 254-281 1-27 (83)
174 PF05099 TerB: Tellurite resis 30.1 24 0.00052 28.4 0.9 52 225-281 37-89 (140)
175 PF12174 RST: RCD1-SRO-TAF4 (R 29.7 76 0.0017 22.6 3.3 47 227-281 7-53 (70)
176 PF05042 Caleosin: Caleosin re 29.3 1.7E+02 0.0038 24.9 5.8 68 211-281 96-165 (174)
177 TIGR02675 tape_meas_nterm tape 28.5 77 0.0017 22.8 3.2 14 227-240 29-42 (75)
178 PF08461 HTH_12: Ribonuclease 28.2 80 0.0017 22.1 3.2 35 227-266 12-46 (66)
179 PF00046 Homeobox: Homeobox do 27.9 1.7E+02 0.0037 19.1 4.8 39 210-261 12-50 (57)
180 PF12419 DUF3670: SNF2 Helicas 27.5 80 0.0017 25.8 3.5 54 224-278 80-138 (141)
181 PLN02952 phosphoinositide phos 26.4 1.7E+02 0.0037 30.2 6.3 53 224-281 13-65 (599)
182 PF05872 DUF853: Bacterial pro 25.7 5.3E+02 0.011 25.8 9.1 55 187-242 101-158 (502)
183 PF12174 RST: RCD1-SRO-TAF4 (R 25.7 1.4E+02 0.003 21.3 4.0 46 192-241 9-54 (70)
184 PLN02223 phosphoinositide phos 24.0 2.5E+02 0.0053 28.6 6.8 67 211-282 16-93 (537)
185 PF09550 DUF2376: Conserved hy 22.8 1.5E+02 0.0032 19.0 3.3 31 229-262 11-41 (43)
186 PF09068 EF-hand_2: EF hand; 22.2 73 0.0016 25.6 2.3 29 212-241 98-126 (127)
187 PF00265 TK: Thymidine kinase; 22.2 93 0.002 26.5 3.1 35 97-138 91-128 (176)
188 PRK09430 djlA Dna-J like membr 21.6 1.9E+02 0.0041 26.5 5.2 45 225-280 69-119 (267)
189 KOG4578 Uncharacterized conser 21.5 1.1E+02 0.0024 28.8 3.5 28 212-240 371-398 (421)
190 cd07316 terB_like_DjlA N-termi 20.7 2.7E+02 0.0059 20.8 5.2 51 227-281 14-64 (106)
191 KOG4347 GTPase-activating prot 20.4 1.2E+02 0.0026 31.3 3.7 30 251-280 553-582 (671)
192 cd00840 MPP_Mre11_N Mre11 nucl 20.1 1.8E+02 0.004 24.9 4.7 53 75-129 3-55 (223)
No 1
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.97 E-value=5.5e-30 Score=241.54 Aligned_cols=309 Identities=32% Similarity=0.382 Sum_probs=206.9
Q ss_pred CcHHhhhccCCceEEecCCCCCCceEEEEEeCCCceEeeeeeeeecccC------CceeeeeeeeecccccccCCCCCce
Q 018687 1 MYQERLGNAGYNTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQE 74 (352)
Q Consensus 1 ~~~~~l~~~gY~~~~~~r~~~~~dG~aif~r~~~~~li~~~~~~~~~~~------~~v~~~~~l~~~~~~~~~~~~~~~~ 74 (352)
+|++.++..||..++..+++.+.+||||+|+.++|+++....+.|.+.. ++|++++.++.... ...++.
T Consensus 179 ~~~~~~~~lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~-----~~~sq~ 253 (495)
T KOG2338|consen 179 FWQPLLGKLGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLV-----DESSQG 253 (495)
T ss_pred HHHHHHhhcCceEEEEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEeccc-----CcccCc
Confidence 4788999999999999999899999999999999999999999887644 67888888876410 113679
Q ss_pred EEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHHhCCCccccccccccCC
Q 018687 75 ILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTD 154 (352)
Q Consensus 75 ~~v~nTHL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~~~g~~~~~~~~~~~~~ 154 (352)
|+|+||||.|++ ...++|+.|.+.|++.+++++...+ ...|+|+|||||+.|++++|.+|+..++......+.
T Consensus 254 ilVanTHLl~np--~~~~vrL~Q~~iiL~~~~~~~~~~~-~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~---- 326 (495)
T KOG2338|consen 254 ILVANTHLLFNP--SRSDVRLAQVYIILAELEKMSKSSK-SHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAH---- 326 (495)
T ss_pred eEEEeeeeeecC--cccchhhHHHHHHHHHHHHHHhhcc-cCCCeEEecCCCCCCCCCcchhhhcCCceecccccc----
Confidence 999999999986 7789999999999999999987655 578999999999999999999998888776555443
Q ss_pred CCCCCCCccccCCCCCCcccccceeccCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhh-cccCCCCCcCHHH
Q 018687 155 GDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFF-KADNNGDVITHSA 233 (352)
Q Consensus 155 ~~~~~~~w~~~~~~~~~~~~ID~i~l~~~~~~~~p~~t~f~efl~~~~~~~~~~~~~~~~~~F~~~-D~d~~~G~I~~~e 233 (352)
...+.+.|+.. +++....++|-- |........+.........-.++|..- |.+.. -..++.|
T Consensus 327 ~~e~s~~~~~~-~~~~ge~g~d~~---------------~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~-~~~~~~~ 389 (495)
T KOG2338|consen 327 TIEDSHRYVFS-ESRLGEEGEDDE---------------EESAAFSRGKGQLSQASIPKPEIFTATGDKNHL-VELTYSE 389 (495)
T ss_pred ccccccccccc-ccccCcccccch---------------hhhhhhccCccccccccCCCccccccccccchh-HHHHHHH
Confidence 22455556655 222334444311 222221112211222222223445433 22222 2344455
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchhhhhhhhcccCCCcccccccccccccCceec
Q 018687 234 FCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVK 313 (352)
Q Consensus 234 l~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~v~ 313 (352)
+.....++++-.++.++.. .+..+. |.++-|..+|..-......-.+....+...+.. .-...+.+++.+.
T Consensus 390 h~~~~~~~s~~s~g~~~~~--~~~~~~--~~gep~vt~~~~~~~g~~dyif~~~~~~~~~~~-----~~~~~~~ikl~~~ 460 (495)
T KOG2338|consen 390 HESLKVNVSLYSHGYGLVH--TENAWL--DRGEPGVTNYALTWKGTLDYIFYSPGDCKQSNR-----EFEEDEAIKLKGL 460 (495)
T ss_pred hhhhhcccceeeccccccc--hhhccc--cCCCcceecHHhhhccceeeEEeccCcccccch-----hhhcccceeEEEE
Confidence 5442233332223334333 333333 788888899987654433322222211111111 1224556788888
Q ss_pred CCCCCChhhhcCCCCCC-CCCCCCCCeeEEeeccc
Q 018687 314 DAFLFPSEVEKGKWPEN-YSLSDHAPLSVVFSPVR 347 (352)
Q Consensus 314 ~a~l~~~~~~~~~w~~~-~~l~d~~~~~~~~~~~~ 347 (352)
-+.++|.|++++.||.| +.-|||..|+|+|++|.
T Consensus 461 l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~~~~~ 495 (495)
T KOG2338|consen 461 LRIPSPQEMWKAGQPPNGRYGSDHIALVAQFSLVK 495 (495)
T ss_pred ecCCCHHHhhccCCCCCCCCcccceEeeEeeEeeC
Confidence 99999999999999998 77799999999999873
No 2
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.90 E-value=3e-23 Score=205.66 Aligned_cols=137 Identities=30% Similarity=0.437 Sum_probs=108.4
Q ss_pred CcHHhhhccCCceEEecCCCC-------CCceEEEEEeCCCceEeeeeeeeecccC----------------------Cc
Q 018687 1 MYQERLGNAGYNTFSLARTNN-------RGDGLLTALHRDYFNVLNYRELLFNDFG----------------------DR 51 (352)
Q Consensus 1 ~~~~~l~~~gY~~~~~~r~~~-------~~dG~aif~r~~~~~li~~~~~~~~~~~----------------------~~ 51 (352)
+|++.|.+.||.++|.+|++. ..||||||||++||++++...+.|+... ++
T Consensus 315 ~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdN 394 (606)
T PLN03144 315 FFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDN 394 (606)
T ss_pred HHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCc
Confidence 368899999999999988742 6899999999999999999988765321 34
Q ss_pred eeeeeeeeecccccccC-CCCCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCC
Q 018687 52 VAQLVHVESVVPFFQNQ-GGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR 130 (352)
Q Consensus 52 v~~~~~l~~~~~~~~~~-~~~~~~~~v~nTHL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~ 130 (352)
+++++.|+......... .+.++.|+|+||||+|.+ ...++|+.|++.|++.|+++... ...|+|+|||||+.|+
T Consensus 395 VAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p--~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS~P~ 469 (606)
T PLN03144 395 VALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQ--ELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNSVPG 469 (606)
T ss_pred EEEEEEEEEecccccccCCCCccEEEEEEeeeccCC--ccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCCCCC
Confidence 78888887652111000 123568999999999766 67799999999999999988542 3689999999999999
Q ss_pred hhhhHHHHhCCCc
Q 018687 131 GHVYKFLRSQGFV 143 (352)
Q Consensus 131 ~~~~~~l~~~g~~ 143 (352)
+.+|++|. .|.+
T Consensus 470 S~vy~lLt-~G~v 481 (606)
T PLN03144 470 SAPHCLLA-TGKV 481 (606)
T ss_pred Chhhhhhh-cCCc
Confidence 99999995 4444
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.50 E-value=5.2e-14 Score=128.65 Aligned_cols=129 Identities=24% Similarity=0.353 Sum_probs=93.6
Q ss_pred CcHHhhhccCCceEEecCCC----------CCCceEEEEEeC----CCceEeeeeeeeecccC-----------------
Q 018687 1 MYQERLGNAGYNTFSLARTN----------NRGDGLLTALHR----DYFNVLNYRELLFNDFG----------------- 49 (352)
Q Consensus 1 ~~~~~l~~~gY~~~~~~r~~----------~~~dG~aif~r~----~~~~li~~~~~~~~~~~----------------- 49 (352)
+|++.|+..||++++.++.+ ...+||||||++ +|+.++-.-...|...-
T Consensus 90 fw~~~l~~~gY~~if~~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~ 169 (378)
T COG5239 90 FWKDQLGKLGYDGIFIPKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIG 169 (378)
T ss_pred HHHHHhcccccceEEecCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHh
Confidence 58999999999999988764 157899999999 66444433222222110
Q ss_pred --Ccee---eeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhcCC----------
Q 018687 50 --DRVA---QLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKL---------- 114 (352)
Q Consensus 50 --~~v~---~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~---------- 114 (352)
++++ +++-+ ..+.++.+++|+|||+.|.+ ...++++.|+.++++++++...+...
T Consensus 170 e~~~~~w~~l~~~l--------~n~e~gd~~~va~Th~~w~~--~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~ 239 (378)
T COG5239 170 EKDNIAWVCLFVGL--------FNKEPGDTPYVANTHLPWDP--KYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKS 239 (378)
T ss_pred hhhhcchhheeeee--------ccCCCCCceeEEeccccccC--CCCchheehhhHHHHHHHHHhhhcCCcchhcccccc
Confidence 2222 12222 23457999999999999765 67799999999999999988765321
Q ss_pred -CCCCEEEecCCCCCCChhhhHHHHh
Q 018687 115 -NHIPIILCGDWNGSKRGHVYKFLRS 139 (352)
Q Consensus 115 -~~~pvil~GDFNs~~~~~~~~~l~~ 139 (352)
+..++.+|||||+...+.+|..|..
T Consensus 240 ~~~~~~l~~gd~ns~~~s~vy~~l~~ 265 (378)
T COG5239 240 YPEVDILITGDFNSLRASLVYKFLVT 265 (378)
T ss_pred CcccccccCCCccceecceehhhhhh
Confidence 2336799999999999999999953
No 4
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.43 E-value=1.2e-13 Score=130.37 Aligned_cols=130 Identities=24% Similarity=0.440 Sum_probs=93.8
Q ss_pred CcHHhhhccCCceEEecCC------CCCCceEEEEEeCCCceEeeeeeeeecccC-----------------Cceee-ee
Q 018687 1 MYQERLGNAGYNTFSLART------NNRGDGLLTALHRDYFNVLNYRELLFNDFG-----------------DRVAQ-LV 56 (352)
Q Consensus 1 ~~~~~l~~~gY~~~~~~r~------~~~~dG~aif~r~~~~~li~~~~~~~~~~~-----------------~~v~~-~~ 56 (352)
+|.+.|...||.+++.+|+ .+..||||||||+++|+++.+..+.++... ++.+. +.
T Consensus 78 ~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 157 (361)
T KOG0620|consen 78 FFSPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLV 157 (361)
T ss_pred HccchhhhcCCcceeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhh
Confidence 4788999999999999986 557999999999999999998888887643 11111 11
Q ss_pred eeeecccccccCCCCCceEE----EEEeeecCCCCCCchhHHHHHHHHHHHHHHHHH----Hh-------cCCCCCCEEE
Q 018687 57 HVESVVPFFQNQGGGQQEIL----IVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQ----TE-------NKLNHIPIIL 121 (352)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~----v~nTHL~~~~~~~~~~~R~~Q~~~l~~~i~~~~----~~-------~~~~~~pvil 121 (352)
.++. ..+..+. ++|||+.|.+ ...++++.|+..++..++... +. ......|+++
T Consensus 158 ~L~~---------~~~~~~~~~~~~~n~h~~~~~--~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 226 (361)
T KOG0620|consen 158 SLKA---------ELGNMVSLPHLLLNTHILWDL--PYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLL 226 (361)
T ss_pred hhhh---------hcCCceeeccccccceeccCC--CccchHHHHHHHHhhcccccchhhhhhhccccccccccccceee
Confidence 1111 1122332 4899998655 577999999999998853111 10 1133689999
Q ss_pred ecCCCCCCChhhhHHHHhCC
Q 018687 122 CGDWNGSKRGHVYKFLRSQG 141 (352)
Q Consensus 122 ~GDFNs~~~~~~~~~l~~~g 141 (352)
|||||+.|.+++|.++...+
T Consensus 227 ~gdfNs~p~~~v~~~~~~~~ 246 (361)
T KOG0620|consen 227 CGDFNSTPLSPVYALLASGI 246 (361)
T ss_pred eccccCCCCccceeecccCC
Confidence 99999999999999995433
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.42 E-value=7e-13 Score=110.16 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhh-hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcc
Q 018687 191 QASWAEAVFSIIKCQLQ-KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGV 269 (352)
Q Consensus 191 ~t~f~efl~~~~~~~~~-~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~ 269 (352)
...|.+|+..+...... ...++++++|+.||.|++ |+|+..||..+|+.+| +.++++|++.|++.+|.|+||.
T Consensus 71 ~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~ 144 (160)
T COG5126 71 TVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHD-GYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGE 144 (160)
T ss_pred ccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCce
Confidence 34577888877765543 345899999999999999 9999999999999999 7999999999999999999999
Q ss_pred eeHHHHHHHHhc
Q 018687 270 VNYEEFKQRMWN 281 (352)
Q Consensus 270 I~~~EF~~~l~~ 281 (352)
|+|++|++.+..
T Consensus 145 i~~~eF~~~~~~ 156 (160)
T COG5126 145 IDYEEFKKLIKD 156 (160)
T ss_pred EeHHHHHHHHhc
Confidence 999999987753
No 6
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.39 E-value=9.5e-13 Score=99.62 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=62.8
Q ss_pred hhhhhHHHHHhhhcc-cCCCCCcCHHHHHHHHHH-hccCCCCCCCCH-HHHHHHHHhhCCCCCcceeHHHHHHHHhch
Q 018687 208 KASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ-VNLAGLPYGLSF-QETDDLWAQADVDGNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~-d~~~G~I~~~el~~~l~~-lg~~~~~~~~~~-~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~ 282 (352)
.....++.+|+.||+ +++ |+|+.+||+.+|+. +| ..+++ +++++||+.+|.|+||.|+|+||+.+|...
T Consensus 5 ~ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 345678999999999 999 99999999999999 88 56888 999999999999999999999999888654
No 7
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.34 E-value=4.3e-12 Score=106.45 Aligned_cols=84 Identities=29% Similarity=0.400 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhhh-----hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC
Q 018687 192 ASWAEAVFSIIKCQLQK-----ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 266 (352)
Q Consensus 192 t~f~efl~~~~~~~~~~-----~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~ 266 (352)
.++.+|+..+....... ....++++|+.||.|++ |+||++||+.+|..+| .+++.++++.|++.+|.|+
T Consensus 61 I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~-G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~ 134 (151)
T KOG0027|consen 61 IDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGD-GFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDG 134 (151)
T ss_pred EcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCC-CcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCC
Confidence 34566666655544322 23489999999999999 9999999999999999 7999999999999999999
Q ss_pred CcceeHHHHHHHHhc
Q 018687 267 NGVVNYEEFKQRMWN 281 (352)
Q Consensus 267 dg~I~~~EF~~~l~~ 281 (352)
||.|+|+||+++|..
T Consensus 135 dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 135 DGKVNFEEFVKMMSG 149 (151)
T ss_pred CCeEeHHHHHHHHhc
Confidence 999999999988753
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.31 E-value=4.5e-11 Score=110.45 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCceEEEEEeCCCceEeeeeeeeecccC------CceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCC----Cch
Q 018687 22 RGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS----SLS 91 (352)
Q Consensus 22 ~~dG~aif~r~~~~~li~~~~~~~~~~~------~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~----~~~ 91 (352)
...|++|+ |||+++......|+... .+..+.+.+.. +++.|.|+||||.+.... ...
T Consensus 89 ~~~G~~iL---Sr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~~----------~g~~~~v~~THL~~~~~~~~~~~~~ 155 (283)
T TIGR03395 89 EDGGVAIV---SKWPIEEKIQYIFNKGCGADNLSNKGFAYVKINK----------NGKKFHVIGTHLQAQDSMCSKLGPA 155 (283)
T ss_pred cCCEEEEE---ECCCccccEEEEccCCCCCccccCCceEEEEEec----------CCeEEEEEEeCCCCCcccccccccH
Confidence 35589999 88999988777675322 23333333332 378899999999864311 125
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHH
Q 018687 92 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLR 138 (352)
Q Consensus 92 ~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~ 138 (352)
.+|..|+..|.+.|.... .....|+|+|||||..|.+..|+.|.
T Consensus 156 ~~R~~Q~~~i~~~i~~~~---~~~~~pvIl~GDfN~~~~s~~~~~ml 199 (283)
T TIGR03395 156 SIRANQLNEIQDFIDSKN---IPKDETVLIGGDLNVNKGSNEYHDMF 199 (283)
T ss_pred HHHHHHHHHHHHHHhhcc---CCCCceEEEEeeCCCCCCCHHHHHHH
Confidence 789999999998886421 12356899999999999999998774
No 9
>PRK11756 exonuclease III; Provisional
Probab=99.31 E-value=3.6e-11 Score=110.53 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=94.2
Q ss_pred hhccCCceEEecCCCCCCceEEEEEeCCCceEeeeeeeeeccc--CCceeeeeeeeecccccccCCCCCceEEEEEeeec
Q 018687 6 LGNAGYNTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDF--GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLL 83 (352)
Q Consensus 6 l~~~gY~~~~~~r~~~~~dG~aif~r~~~~~li~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~ 83 (352)
+...||..++.++. ...|+||+.|. +++.......... ..+..+.+.++.. +..|.|+|+|+-
T Consensus 47 ~~~~gy~~~~~~~~--~~~GvailSr~---p~~~~~~~~~~~~~~~~~r~l~~~i~~~----------~g~~~v~n~y~P 111 (268)
T PRK11756 47 VEALGYHVFYHGQK--GHYGVALLSKQ---TPIAVRKGFPTDDEEAQRRIIMATIPTP----------NGNLTVINGYFP 111 (268)
T ss_pred HHhcCCEEEEeCCC--CCCEEEEEECC---ChHHeEECCCCccccccCCEEEEEEEcC----------CCCEEEEEEEec
Confidence 45679988776532 45699999654 4544333211111 1233444444332 334999999994
Q ss_pred CCCCC---CchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChh--------------------------hh
Q 018687 84 FPHDS---SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGH--------------------------VY 134 (352)
Q Consensus 84 ~~~~~---~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~--------------------------~~ 134 (352)
..... .....|..++..|...+.+... ...|+|+|||||..|.+. .+
T Consensus 112 ~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~----~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~ 187 (268)
T PRK11756 112 QGESRDHPTKFPAKRQFYQDLQNYLETELS----PDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWL 187 (268)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHhc----cCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHH
Confidence 21110 1112567788888887766532 256999999999998754 55
Q ss_pred HHHHhCCCccccccccccCCCCCCCCCccccCCCC---CCcccccceeccC
Q 018687 135 KFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHR---GNICGVDFIWLRN 182 (352)
Q Consensus 135 ~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~ID~i~l~~ 182 (352)
+.|.+.|++++|+..++.. ...++|...+... +...+|||||++.
T Consensus 188 ~~l~~~~l~D~~R~~~p~~---~~~~T~~~~~~~~~~~~~g~RIDyi~~s~ 235 (268)
T PRK11756 188 DRLMDWGLVDTFRQLNPDV---NDRFSWFDYRSKGFDDNRGLRIDLILATQ 235 (268)
T ss_pred HHHHhCCcEeehhhhCCCC---CCcccCcCCcccccccCCceEEEEEEeCH
Confidence 5666679999998877652 2345676544321 2345799999864
No 10
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=110.47 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=74.6
Q ss_pred CCCCceEEEEEeCCCceEeeeeeeeeccc---CCceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHHHH
Q 018687 20 NNRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLH 96 (352)
Q Consensus 20 ~~~~dG~aif~r~~~~~li~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R~~ 96 (352)
+...+|.||+ +++++.+...+.++.. ..|.++++.++.. .++.|.|+|+||.+.. .-|+.
T Consensus 88 ~~~~~GnaiL---S~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~~---------~g~~l~V~~~HL~l~~-----~~R~~ 150 (259)
T COG3568 88 GEGQHGNAIL---SRLPIRDVENLALPDPTGLEPRGALLAEIELP---------GGKPLRVINAHLGLSE-----ESRLR 150 (259)
T ss_pred ccceeeeEEE---ecCcccchhhccCCCCCCCCCceeEEEEEEcC---------CCCEEEEEEEeccccH-----HHHHH
Confidence 3467899999 4888888888888853 3688888877653 3789999999998543 66999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHH
Q 018687 97 QVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLR 138 (352)
Q Consensus 97 Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~ 138 (352)
|+..|+..+.-- ...|+|+|||||+.|+|..|+.+.
T Consensus 151 Q~~~L~~~~~l~------~~~p~vl~GDFN~~p~s~~yr~~~ 186 (259)
T COG3568 151 QAAALLALAGLP------ALNPTVLMGDFNNEPGSAEYRLAA 186 (259)
T ss_pred HHHHHHhhccCc------ccCceEEEccCCCCCCCccceecc
Confidence 999998832211 122999999999999999997663
No 11
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.27 E-value=1.6e-11 Score=92.92 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=61.3
Q ss_pred hhhhhHHHHHhhhc-ccCCCC-CcCHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 208 KASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 208 ~~~~~~~~~F~~~D-~d~~~G-~I~~~el~~~l~~-----lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
.....++++|+.|| .|++ | +|+.+||+.+|+. +| ...++++++++|+.+|.|+||.|+|+||+.++.
T Consensus 5 ~~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~~lg-----~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 5 KAMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSHFLE-----EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHHHhc-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 44568899999998 7999 9 5999999999999 88 578999999999999999999999999998876
Q ss_pred c
Q 018687 281 N 281 (352)
Q Consensus 281 ~ 281 (352)
.
T Consensus 79 ~ 79 (88)
T cd05027 79 M 79 (88)
T ss_pred H
Confidence 4
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.26 E-value=1.3e-11 Score=88.30 Aligned_cols=62 Identities=26% Similarity=0.494 Sum_probs=53.4
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCH----HHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSF----QETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~----~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
.++++|+.+|.|++ |+|+.+||+.+++.++ ...++ +.++.+|+.+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~-G~i~~~el~~~~~~~~-----~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGD-GYISKEELRRALKHLG-----RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHTT-----SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCcc-CCCCHHHHHHHHHHhc-----ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36899999999999 9999999999999988 34444 455666999999999999999998764
No 13
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.22 E-value=2.6e-10 Score=103.94 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=90.9
Q ss_pred hhhccCCceEEecCCCCCCceEEEEEeCCCceEeeeeeeeecccCCceeeeeeeeecccccccCCCCCceEEEEEeeecC
Q 018687 5 RLGNAGYNTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLF 84 (352)
Q Consensus 5 ~l~~~gY~~~~~~r~~~~~dG~aif~r~~~~~li~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~ 84 (352)
.+...||..++.++ .+..|+||++|+..+.+.........+...|+. .++. ..+.++|||+..
T Consensus 46 ~~~~~g~~~~~~~~--~g~~Gvailsr~~~~~~~~~~~~~~~~~~~r~i---~~~~------------~~~~l~~~~~p~ 108 (254)
T TIGR00195 46 PFHKEGYHVFFSGQ--KGYSGVAIFSKEEPLSVRRGFGVEEEDAEGRII---MAEF------------DSFLVINGYFPN 108 (254)
T ss_pred HhhcCCcEEEEecC--CCcceEEEEEcCCcceEEECCCCcccccCCCEE---EEEE------------CCEEEEEEEccC
Confidence 34568998887665 345689999986655543211111111223422 2222 238899999963
Q ss_pred CCC--CCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCCh--------------------hhhHHHHhCCC
Q 018687 85 PHD--SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGF 142 (352)
Q Consensus 85 ~~~--~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~--------------------~~~~~l~~~g~ 142 (352)
... ...-..|..+...+.+.+..... ...|+|+|||||..|.. ..++.|.+.|+
T Consensus 109 ~~~~~~~~~~~r~~~~~~l~~~~~~~~~----~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l 184 (254)
T TIGR00195 109 GSRDDSEKLPYKLQWLEALQNYLEKLVD----KDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGL 184 (254)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCC
Confidence 110 01123456666666666665432 24699999999999875 25666656789
Q ss_pred ccccccccccCCCCCCCCCccccCCC---CCCcccccceeccC
Q 018687 143 VSSYDVAHQYTDGDADAHKWVSHRNH---RGNICGVDFIWLRN 182 (352)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~ID~i~l~~ 182 (352)
+++|...+.. ...++|...+.. .....+|||||+..
T Consensus 185 ~D~~r~~~~~----~~~~T~~~~~~~~~~~~~g~RID~i~~s~ 223 (254)
T TIGR00195 185 VDTFRKFNPD----EGAYSWWDYRTKARDRNRGWRIDYFLVSE 223 (254)
T ss_pred EeeecccCCC----CCCCcccCCcCCccccCCceEEEEEEECH
Confidence 9998766553 334667654321 12234699999854
No 14
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.16 E-value=4.6e-11 Score=109.28 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=103.9
Q ss_pred CceEEecCCCCCCceEEEEEeCCCceEeeeeeeeecccC------------CceeeeeeeeecccccccCCCCCceEEEE
Q 018687 11 YNTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------------DRVAQLVHVESVVPFFQNQGGGQQEILIV 78 (352)
Q Consensus 11 Y~~~~~~r~~~~~dG~aif~r~~~~~li~~~~~~~~~~~------------~~v~~~~~l~~~~~~~~~~~~~~~~~~v~ 78 (352)
|.+...-+++-.|.|++|| ||++|++.-...|+-.+ ..+..++.+.+ +++.|-++
T Consensus 67 yPysh~FHSGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~----------~g~~v~~y 133 (422)
T KOG3873|consen 67 YPYSHYFHSGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLV----------GGRMVNLY 133 (422)
T ss_pred CchHHhhhcccccCceEEe---ecCchhhhhhhccccCCccceeeeccccccceeEEEEEee----------CCEEeeee
Confidence 3333333556679999999 88999877554444322 12223334443 36899999
Q ss_pred EeeecCCCCCCchh----HHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHHhCCCccccccccccCC
Q 018687 79 NTHLLFPHDSSLSV----VRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTD 154 (352)
Q Consensus 79 nTHL~~~~~~~~~~----~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~~~g~~~~~~~~~~~~~ 154 (352)
||||..+.+ +..+ -|..||..+.+.|+...+ ...-||+|||||..|.+-.+++|...|++++|..++....
T Consensus 134 ntHLHAeY~-rq~D~YL~HR~~QAwdlaqfi~~t~q----~~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~ 208 (422)
T KOG3873|consen 134 NTHLHAEYD-RQNDEYLCHRVAQAWDLAQFIRATRQ----NADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQC 208 (422)
T ss_pred ehhcccccc-ccCchhhhHHHHHHHHHHHHHHHHhc----CCcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhh
Confidence 999977554 2333 499999999999987644 2457999999999999999999988899988876654322
Q ss_pred C------------------CCCCCCccccCCCCCC--cccccceeccCC
Q 018687 155 G------------------DADAHKWVSHRNHRGN--ICGVDFIWLRNP 183 (352)
Q Consensus 155 ~------------------~~~~~~w~~~~~~~~~--~~~ID~i~l~~~ 183 (352)
. +-....|++.....+. .++|||++.++.
T Consensus 209 e~~~~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~ 257 (422)
T KOG3873|consen 209 ESDSFRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPG 257 (422)
T ss_pred cCcccccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCc
Confidence 1 1223345542221233 467999998765
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.15 E-value=1.7e-10 Score=88.50 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=59.4
Q ss_pred hhhhhHHHHHhhhc-ccCCCC-CcCHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchh
Q 018687 208 KASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS 283 (352)
Q Consensus 208 ~~~~~~~~~F~~~D-~d~~~G-~I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~ 283 (352)
.....+.++|+.|| .|++ | +|+.+||+.+|+. ++- ......++.++++|++.+|.|+||.|+|+||+.+|....
T Consensus 7 ~a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~~-~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELTD-FLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhHH-hcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 44567889999999 7898 8 5999999999977 320 000235788999999999999999999999998886543
No 16
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.14 E-value=1.7e-10 Score=87.37 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=61.0
Q ss_pred hhhhhHHHHHhhhcc-cCCCCCcCHHHHHHHHHH---hccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchh
Q 018687 208 KASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ---VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS 283 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~-d~~~G~I~~~el~~~l~~---lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~ 283 (352)
+....+..+|..||. |+++|+|+.+||+.+|++ +| .+++++++++||+.+|.|++|.|+|+||+..|....
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-----~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-----SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 344677899999998 773399999999999974 57 689999999999999999999999999998886543
No 17
>PRK05421 hypothetical protein; Provisional
Probab=99.13 E-value=5.7e-10 Score=102.26 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCCceEEEEEeCCCceEeeeeeeeeccc---CCceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHHHHH
Q 018687 21 NRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQ 97 (352)
Q Consensus 21 ~~~dG~aif~r~~~~~li~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R~~Q 97 (352)
+...|+||+ ||+++.....+..... ..|.++++.+... .++.+.|+||||.... .....|..|
T Consensus 105 ~~~~GvaiL---SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~~---------~g~~l~v~ntHl~~~~--~~~~~r~~q 170 (263)
T PRK05421 105 QHPSGVMTL---SKAHPVYCCPLREREPWLRLPKSALITEYPLP---------NGRTLLVVNIHAINFS--LGVDVYSKQ 170 (263)
T ss_pred CCccceeEe---eecccceeeccCCCCccccCcceeEEEEEEeC---------CCCEEEEEEECccccC--cChHHHHHH
Confidence 346699999 6678776655422221 1356666666543 3678999999996432 123668899
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCCh--hhhHHH-HhCCCc
Q 018687 98 VYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--HVYKFL-RSQGFV 143 (352)
Q Consensus 98 ~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~--~~~~~l-~~~g~~ 143 (352)
+..|.+.+... ..|+|+|||||+.+.. ..++.+ ...|+.
T Consensus 171 ~~~l~~~~~~~-------~~p~Il~GDFN~~~~~~~~~l~~~~~~~~l~ 212 (263)
T PRK05421 171 LEPIGDQIAHH-------SGPVILAGDFNTWSRKRMNALKRFARELGLK 212 (263)
T ss_pred HHHHHHHHHhC-------CCCEEEEcccccCcccchHHHHHHHHHcCCC
Confidence 98888877543 4699999999997643 234433 344544
No 18
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.1e-10 Score=92.54 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHh-hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCccee
Q 018687 193 SWAEAVFSIIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVN 271 (352)
Q Consensus 193 ~f~efl~~~~~~~~-~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~ 271 (352)
.|.+|...+...+. .....+++.+|+.+|-|++ |.|+..+|+.+.+.|| +.++++|+.+||.++|.|+||.|+
T Consensus 87 ~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~-Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevn 160 (172)
T KOG0028|consen 87 TFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKT-GKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVN 160 (172)
T ss_pred chHHHHHHHHHHHhccCcHHHHHHHHHcccccCC-CCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhccccccccc
Confidence 34455554444333 4455889999999999999 9999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHhc
Q 018687 272 YEEFKQRMWN 281 (352)
Q Consensus 272 ~~EF~~~l~~ 281 (352)
-+||+.+|..
T Consensus 161 eeEF~~imk~ 170 (172)
T KOG0028|consen 161 EEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHhc
Confidence 9999988753
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.11 E-value=3e-10 Score=87.00 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=61.2
Q ss_pred hhhhhhHHHHHhhhc-ccCCCCC-cCHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchh
Q 018687 207 QKASLAENDAFAFFK-ADNNGDV-ITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS 283 (352)
Q Consensus 207 ~~~~~~~~~~F~~~D-~d~~~G~-I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~ 283 (352)
......++++|+.|| .|++ |+ |+.+||+.+|+. +|.. .+...+++++++||+.+|.|++|.|+|+||+.++....
T Consensus 5 e~~~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~~-~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSDF-LDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 345577999999997 9999 95 999999999985 6510 01235889999999999999999999999998876543
No 20
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.11 E-value=2.8e-10 Score=87.49 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=61.2
Q ss_pred hhhhHHHHHhhhcc-cC-CCCCcCHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 209 ASLAENDAFAFFKA-DN-NGDVITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 209 ~~~~~~~~F~~~D~-d~-~~G~I~~~el~~~l~~-----lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
....++.+|..||. |+ + |+|+.+||+.+|+. +| ..+++++++.+++.+|.|++|.|+|+||+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~~lg-----~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSEFLK-----NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHHHhh-----ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34678899999997 87 7 99999999999986 45 4679999999999999999999999999988865
Q ss_pred hhhh
Q 018687 282 LSCS 285 (352)
Q Consensus 282 ~~~~ 285 (352)
....
T Consensus 80 ~~~~ 83 (94)
T cd05031 80 LSIA 83 (94)
T ss_pred HHHH
Confidence 4443
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.10 E-value=2.6e-10 Score=88.04 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=59.9
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
.+...++++|..||.|++ |.|+.+||+++|+.+| ++.+++++|+..+|.+++|.|+|+||+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~~~-------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLKSG-------LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 345678999999999999 9999999999999866 68899999999999999999999999987754
No 22
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=4e-09 Score=95.86 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=85.6
Q ss_pred hhhccCCceEEecCCCCCCceEEEEEeCCCceEeeeeeeeecccCCceeeeeeeeecccccccCCCCCceEEEEEeeecC
Q 018687 5 RLGNAGYNTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLF 84 (352)
Q Consensus 5 ~l~~~gY~~~~~~r~~~~~dG~aif~r~~~~~li~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~ 84 (352)
.+...||..++.+....+..|+||++|.....+... +..... +.....+.++ .+.+.|+|+|+-.
T Consensus 47 ~~~~~g~~~~~~~~~~~~~~G~ailsr~~~~~~~~~--~~~~~~-~~~~r~l~~~------------~~~~~i~~vy~p~ 111 (255)
T TIGR00633 47 LFEELGYHVFFHGAKSKGYSGVAILSKVEPLDVRYG--FGGEEH-DEEGRVITAE------------FDGFTVVNVYVPN 111 (255)
T ss_pred HhccCCceEEEeecccCCcceEEEEEcCCcceEEEC--CCCCcc-cCCCcEEEEE------------ECCEEEEEEEccC
Confidence 345789998887665434569999987543222110 111111 1111122222 2468999999942
Q ss_pred CCC--CCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCCh--------------------hhhHHHHhCCC
Q 018687 85 PHD--SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGF 142 (352)
Q Consensus 85 ~~~--~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~--------------------~~~~~l~~~g~ 142 (352)
... ......|..+...+.+.+.+... ...|+|+|||||+.+.. ..++.+.+.|+
T Consensus 112 ~~~~~~~~~~~r~~~~~~l~~~~~~~~~----~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (255)
T TIGR00633 112 GGSRGLERLEYKLQFWDALFQYYEKELD----AGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGL 187 (255)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCC
Confidence 210 00112455566666555543321 24699999999998742 34555556789
Q ss_pred ccccccccccCCCCCCCCCccccCCC---CCCcccccceeccC
Q 018687 143 VSSYDVAHQYTDGDADAHKWVSHRNH---RGNICGVDFIWLRN 182 (352)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~ID~i~l~~ 182 (352)
.++|...++.. ....+|...+.. .....+|||||+..
T Consensus 188 ~D~~~~~~~~~---~~~~T~~~~~~~~~~~~~~~rID~i~~s~ 227 (255)
T TIGR00633 188 VDTFRHFNPDT---EGAYTWWDYRSGARDRNRGWRIDYFLVSE 227 (255)
T ss_pred EecchhhCCCC---CCcCcCcCCccCccccCCceEEEEEEECH
Confidence 99887654432 123456544321 12234699999754
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.05 E-value=2.9e-10 Score=97.63 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=88.7
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc-----hhh
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN-----LSC 284 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~-----~~~ 284 (352)
...+...|...|+|+. |.|+.+||+.+|.+.+. .+++.+.++.||..+|.+.+|+|+++||. .||+ ...
T Consensus 56 ~~~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~~----~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~-~Lw~~i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRS-GRILAKELQQALSNGTW----SPFSIETCRLMISMFDRDNSGTIGFKEFK-ALWKYINQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCcccc-ccccHHHHHHHhhcCCC----CCCCHHHHHHHHHHhcCCCCCccCHHHHH-HHHHHHHHHHHH
Confidence 3577899999999999 99999999999997664 68999999999999999999999999995 5655 356
Q ss_pred hhhhhcccCCCcccccccccccccCceecCC
Q 018687 285 SAQIENNCNDNMEDSKDCSEKEILGFAVKDA 315 (352)
Q Consensus 285 ~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a 315 (352)
+.+.++|.+|.++..|+..++.+.||.++..
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHH
Confidence 6788999999999999999999999986643
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.05 E-value=5e-10 Score=93.94 Aligned_cols=67 Identities=28% Similarity=0.475 Sum_probs=62.7
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
....++++|..||+|++ |+|+..||..+|+.+| ..++++++..+++++|.|++|.|+++||+.+|..
T Consensus 6 ~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~ 72 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGD-GKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEK 72 (151)
T ss_pred HHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence 45678999999999999 9999999999999999 5899999999999999999999999999988865
No 25
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.04 E-value=9.9e-10 Score=87.52 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=85.3
Q ss_pred hhhhHHHHhCCCccccccccccCCCCCCCCCccccCCCCCCcccccceeccCCCCCC-chhHHHHHHHHHHHHHHHh---
Q 018687 131 GHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSR-KPLQASWAEAVFSIIKCQL--- 206 (352)
Q Consensus 131 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ID~i~l~~~~~~~-~p~~t~f~efl~~~~~~~~--- 206 (352)
+++-..|++.|.+++...+.+... +|.... ......|.+|+.+...--.
T Consensus 31 ~q~gdvlRalG~nPT~aeV~k~l~---------------------------~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 31 SQVGDVLRALGQNPTNAEVLKVLG---------------------------QPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHc---------------------------CcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 466688888899888777666521 110000 1134556677655433211
Q ss_pred hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 207 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 207 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+..-+..-+.++.||++++ |.|...||+.+|.++| ++++++|++.++.-. .|.+|.|+|+.|++.++
T Consensus 84 q~t~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cCcHHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-----hhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 1222677789999999999 9999999999999999 899999999999875 57899999999998875
No 26
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.04 E-value=6.3e-10 Score=79.58 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=55.2
Q ss_pred HHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 214 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 214 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
+++|..+|.|++ |.|+.+||+.+|+.+| ++.++++.+++.+|.+++|.|+|+||+..+..
T Consensus 2 ~~~F~~~D~~~~-G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGD-GLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCC-CcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 578999999999 9999999999999977 48899999999999999999999999987753
No 27
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.2e-09 Score=96.30 Aligned_cols=157 Identities=22% Similarity=0.333 Sum_probs=95.2
Q ss_pred HHhhhccCCceEE-ecCCCCCCceEEEEEeCCCceEeeeeee-eecccCCceeeeeeeeecccccccCCCCCceEEEEEe
Q 018687 3 QERLGNAGYNTFS-LARTNNRGDGLLTALHRDYFNVLNYREL-LFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNT 80 (352)
Q Consensus 3 ~~~l~~~gY~~~~-~~r~~~~~dG~aif~r~~~~~li~~~~~-~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nT 80 (352)
+..+...||+.++ .+. .+..|+||+.|.....+...-.. ...+...|+. .+.. ..|.|+|
T Consensus 44 ~~~~~~~GY~~~~~~gq--KgysGVailsr~~~~~v~~g~~~~~~~d~e~R~I---~a~~------------~~~~v~~- 105 (261)
T COG0708 44 REELEALGYHHVFNHGQ--KGYSGVAILSKKPPDDVRRGFPGEEEDDEEGRVI---EAEF------------DGFRVIN- 105 (261)
T ss_pred HhHHhhCCceEEEecCc--CCcceEEEEEccCchhhhcCCCCCccccccCcEE---EEEE------------CCEEEEE-
Confidence 4567788995554 444 45779999987655422221111 1111122322 2222 2388999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCCh-----------------------hhhHHH
Q 018687 81 HLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG-----------------------HVYKFL 137 (352)
Q Consensus 81 HL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~-----------------------~~~~~l 137 (352)
+|+|.+...+..|...-...++.+..+..+......|+|+|||||-.|.. ..++.|
T Consensus 106 -~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~l 184 (261)
T COG0708 106 -LYFPNGSSIGLEKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRL 184 (261)
T ss_pred -EEcCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHH
Confidence 56555433267777766667777766655544456899999999998742 234445
Q ss_pred HhCCCccccccccccCCCCCCCCCccccCCC-C--CCcccccceeccC
Q 018687 138 RSQGFVSSYDVAHQYTDGDADAHKWVSHRNH-R--GNICGVDFIWLRN 182 (352)
Q Consensus 138 ~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~-~--~~~~~ID~i~l~~ 182 (352)
.+.|++++++..++. ...++|++-+.. . ..-.+||||++++
T Consensus 185 l~~G~~D~~R~~~p~----~~~YTwW~YR~~~~~~n~G~RID~~l~S~ 228 (261)
T COG0708 185 LNAGFVDTFRLFHPE----PEKYTWWDYRANAARRNRGWRIDYILVSP 228 (261)
T ss_pred HHcchhhhhHhhCCC----CCcccccccccchhhhcCceeEEEEEeCH
Confidence 567888888877665 344888876542 1 1224599998754
No 28
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.02 E-value=1.6e-09 Score=87.80 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcc
Q 018687 191 QASWAEAVFSIIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGV 269 (352)
Q Consensus 191 ~t~f~efl~~~~~~~~-~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~ 269 (352)
.+||.-|+..+...+. ......+..+|+.||.+++ |.|..+.|+++|.+.| .+++++||++|++.+-.|..|.
T Consensus 80 PINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~-G~I~~d~lre~Ltt~g-----Dr~~~eEV~~m~r~~p~d~~G~ 153 (171)
T KOG0031|consen 80 PINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGS-GKIDEDYLRELLTTMG-----DRFTDEEVDEMYREAPIDKKGN 153 (171)
T ss_pred CeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCC-CccCHHHHHHHHHHhc-----ccCCHHHHHHHHHhCCcccCCc
Confidence 4567777777766554 3445789999999999999 9999999999999999 8999999999999999999999
Q ss_pred eeHHHHHHHHh
Q 018687 270 VNYEEFKQRMW 280 (352)
Q Consensus 270 I~~~EF~~~l~ 280 (352)
|+|.+|+.+|.
T Consensus 154 ~dy~~~~~~it 164 (171)
T KOG0031|consen 154 FDYKAFTYIIT 164 (171)
T ss_pred eeHHHHHHHHH
Confidence 99999998886
No 29
>PTZ00297 pantothenate kinase; Provisional
Probab=98.99 E-value=4.8e-09 Score=114.96 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=77.9
Q ss_pred HHhhhccCCceEEecCCC---C-------CCceEEEEEeCCCceEeeeeeeeecccC------Cceeeeeeeeecccccc
Q 018687 3 QERLGNAGYNTFSLARTN---N-------RGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQ 66 (352)
Q Consensus 3 ~~~l~~~gY~~~~~~r~~---~-------~~dG~aif~r~~~~~li~~~~~~~~~~~------~~v~~~~~l~~~~~~~~ 66 (352)
...|++.||.++...+.. . ...|+||+ |||+|++.+.+.++... .|..+.+.+++. .
T Consensus 72 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp--~-- 144 (1452)
T PTZ00297 72 VDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVP--L-- 144 (1452)
T ss_pred HHHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccccccccccceEEEEEEcc--c--
Confidence 445677799887765543 1 45699999 99999999999887532 355555555442 0
Q ss_pred cCCCCCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHh-----cCCCCCCEEEecCCCCC
Q 018687 67 NQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTE-----NKLNHIPIILCGDWNGS 128 (352)
Q Consensus 67 ~~~~~~~~~~v~nTHL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~-----~~~~~~pvil~GDFNs~ 128 (352)
.++..+.+.|+||||.+...+ ..|..|+..+.+.++..... ......|+|+|||||..
T Consensus 145 -~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 145 -AEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred -cCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 001135899999999865432 46889999988887752111 11245699999999955
No 30
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.99 E-value=1.9e-09 Score=81.73 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=59.7
Q ss_pred hhhhhHHHHHhh-hcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchh
Q 018687 208 KASLAENDAFAF-FKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS 283 (352)
Q Consensus 208 ~~~~~~~~~F~~-~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~ 283 (352)
.....+..+|+. +|.|+++|+|+.+||+.+|....-.-.....++.++++||+.+|.|+||.|+|+||+.+|....
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 445678899999 7888872499999999999874200000246688999999999999999999999998887543
No 31
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.97 E-value=1.8e-09 Score=81.87 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=59.8
Q ss_pred hhhhhHHHHHhhhcc--cCCCCCcCHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 208 KASLAENDAFAFFKA--DNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~--d~~~G~I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
++...++++|..||. |++ |.|+.+||+.+++. +|. ..+...+.++++.||..+|.+++|.|+|+||+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~-~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPN-FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 445678999999999 899 99999999999986 551 0012346899999999999999999999999987764
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.95 E-value=1.9e-09 Score=73.83 Aligned_cols=49 Identities=35% Similarity=0.555 Sum_probs=46.2
Q ss_pred CCcCHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 227 DVITHSAFCEALRQVNLAGLPYG-LSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~-~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
|.|+.+||+.+|..+| .. +++++++.|+..+|.|++|.|+|+||+..+.
T Consensus 3 G~i~~~~~~~~l~~~g-----~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLG-----IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTT-----SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhC-----CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 9999999999998889 47 9999999999999999999999999998775
No 33
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.90 E-value=2.5e-09 Score=88.98 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=76.3
Q ss_pred hhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchhh-
Q 018687 206 LQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSC- 284 (352)
Q Consensus 206 ~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~~- 284 (352)
...+..+++++|.+||+|++ |.|++.||..+|+.+| ...++.++.+|+..+|. +++.|+|.+|+.+|.....
T Consensus 15 t~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSD-GLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc
Confidence 35667899999999999999 9999999999999999 68999999999999999 9999999999988865332
Q ss_pred ----------hhhhhcccCCCcccccccccccccC
Q 018687 285 ----------SAQIENNCNDNMEDSKDCSEKEILG 309 (352)
Q Consensus 285 ----------~~~~~~~~~~~~~~~e~~~~~~~~g 309 (352)
+.-.+.+..|.++-.+........|
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg 122 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG 122 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc
Confidence 2333455556665544443333333
No 34
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=98.90 E-value=1.7e-08 Score=92.32 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=76.2
Q ss_pred cCCceEEecCCCC--CCceEEEEEeCCCceEeeeeeeeeccc-------CCceeeeeeeeecccccccCCCCCceEEEEE
Q 018687 9 AGYNTFSLARTNN--RGDGLLTALHRDYFNVLNYRELLFNDF-------GDRVAQLVHVESVVPFFQNQGGGQQEILIVN 79 (352)
Q Consensus 9 ~gY~~~~~~r~~~--~~dG~aif~r~~~~~li~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~n 79 (352)
.+|.++..+|.++ .+|-.|+|||++++++++...+ ++. -.|...++.++... ...+.|.++|
T Consensus 78 ~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~~~~~~F~ReP~~~~F~~~~-------~~~~~F~li~ 148 (276)
T smart00476 78 NTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCECGNDVFSREPFVVKFSSPS-------TAVKEFVIVP 148 (276)
T ss_pred CCceEEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCCCccccccccceEEEEEeCC-------CCCccEEEEE
Confidence 4799999887654 4677999999999999988665 432 24566666665431 1356899999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCC---ChhhhHHH
Q 018687 80 THLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSK---RGHVYKFL 137 (352)
Q Consensus 80 THL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~---~~~~~~~l 137 (352)
+|++ |. .|..++..|.+.+.....+ ....|||++||||+.+ .+..++.|
T Consensus 149 ~H~~--p~-----~~~~e~~aL~~v~~~~~~~--~~~~~villGDFNa~~~y~~~~~~~~i 200 (276)
T smart00476 149 LHTT--PE-----AAVAEIDALYDVYLDVRQK--WGTEDVIFMGDFNAGCSYVTKKQWSSI 200 (276)
T ss_pred ecCC--hH-----HHHHHHHHHHHHHHHHHHh--hccCCEEEEccCCCCCCccChhhhhhh
Confidence 9998 42 2444555555533333222 2467999999999987 45666666
No 35
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=98.88 E-value=3.7e-08 Score=89.39 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=86.7
Q ss_pred hccCCceEEecCCCCCCceEEEEEeCCCceEeeeeeeeecccCCceeeeeeeeecccccccCCCCCceEEEEEeeecCCC
Q 018687 7 GNAGYNTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPH 86 (352)
Q Consensus 7 ~~~gY~~~~~~r~~~~~dG~aif~r~~~~~li~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~ 86 (352)
...||..++......+..|+||++|.....+...-.....+...|+. .++. ..|.|+|+.. |.
T Consensus 46 ~~~gY~~~~~~~~~kgy~GVAi~~k~~~~~v~~~~~~~~~d~eGR~I---~~~~------------~~~~l~nvY~--Pn 108 (250)
T PRK13911 46 EFKGYFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVI---TCEF------------ESFYLVNVYT--PN 108 (250)
T ss_pred ccCCceEEEEecccCccceEEEEEcCCchheEEcCCCCcccccCCEE---EEEE------------CCEEEEEEEe--cC
Confidence 45699877642222355699999987644432211111111223332 2221 2589999766 34
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCCh--------------------hhhHHHHhCCCcccc
Q 018687 87 DSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSY 146 (352)
Q Consensus 87 ~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~--------------------~~~~~l~~~g~~~~~ 146 (352)
. .....|+.+-......+..+.... ....|+|+|||||..+.. ..++.+...|+++++
T Consensus 109 ~-~~~~~r~~~K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~ 186 (250)
T PRK13911 109 S-QQALSRLSYRMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTF 186 (250)
T ss_pred C-CCCCcchHHHHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehh
Confidence 3 334446665545555555544432 234699999999998642 224444456899988
Q ss_pred ccccccCCCCCCCCCccccCC-C--CCCcccccceeccCC
Q 018687 147 DVAHQYTDGDADAHKWVSHRN-H--RGNICGVDFIWLRNP 183 (352)
Q Consensus 147 ~~~~~~~~~~~~~~~w~~~~~-~--~~~~~~ID~i~l~~~ 183 (352)
...++.. ...++|++.+. . ...-.+||||+++..
T Consensus 187 R~~~p~~---~~~yTww~~~~~~~~~n~g~RIDyilvs~~ 223 (250)
T PRK13911 187 RYFYPNK---EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223 (250)
T ss_pred hhhCCCC---CCCCccCCCcCCccccCCcceEEEEEEChH
Confidence 8766542 24477766432 1 122346999987653
No 36
>PTZ00183 centrin; Provisional
Probab=98.85 E-value=1.6e-08 Score=84.87 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHh-hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCccee
Q 018687 193 SWAEAVFSIIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVN 271 (352)
Q Consensus 193 ~f~efl~~~~~~~~-~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~ 271 (352)
+|.+|+..+..... ......++.+|+.+|.+++ |.|+.+||..+|..+| ..+++++++.++..+|.|++|.|+
T Consensus 71 ~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~-G~i~~~e~~~~l~~~~-----~~l~~~~~~~~~~~~d~~~~g~i~ 144 (158)
T PTZ00183 71 DFEEFLDIMTKKLGERDPREEILKAFRLFDDDKT-GKISLKNLKRVAKELG-----ETITDEELQEMIDEADRNGDGEIS 144 (158)
T ss_pred eHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcCc
Confidence 34555544333221 1223578899999999999 9999999999999988 579999999999999999999999
Q ss_pred HHHHHHHHhc
Q 018687 272 YEEFKQRMWN 281 (352)
Q Consensus 272 ~~EF~~~l~~ 281 (352)
|+||+..+..
T Consensus 145 ~~ef~~~~~~ 154 (158)
T PTZ00183 145 EEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHhc
Confidence 9999887754
No 37
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.85 E-value=3.4e-08 Score=87.78 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=57.3
Q ss_pred CceEEEEEeCCCceEeeeeeeeecccCCceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHHHHHHHHHH
Q 018687 23 GDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKIL 102 (352)
Q Consensus 23 ~dG~aif~r~~~~~li~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R~~Q~~~l~ 102 (352)
+.|+||+||.+.+..+.............+............. . -.++.|.|+|+|+.. ....|..|...++
T Consensus 73 ~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~v~~~H~~~-----~~~~~~~~~~~~~ 144 (249)
T PF03372_consen 73 GYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPV-S--INGKPITVVNVHLPS-----SNDERQEQWRELL 144 (249)
T ss_dssp SEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEE-E--EETEEEEEEEEETTS-----HHHHHHHHHHHHH
T ss_pred CceEEEEEccccccccccccccccccccccccccccccccccc-c--ccceEEEeeeccccc-----cchhhhhhhhhhh
Confidence 5799999998866665555444433322221111111100000 0 016789999999863 3355666677888
Q ss_pred HHHHHHHHhcCCCCCCEEEecCCCCCCCh
Q 018687 103 QYLELYQTENKLNHIPIILCGDWNGSKRG 131 (352)
Q Consensus 103 ~~i~~~~~~~~~~~~pvil~GDFNs~~~~ 131 (352)
+.+...... ....|+|||||||+.+.+
T Consensus 145 ~~~~~~~~~--~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 145 ARIQKIYAD--NPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp HHHHHHHHT--SSCCEEEEEEE-SS-BSS
T ss_pred hhhhhcccc--cccceEEEEeecccCCcc
Confidence 888776553 122379999999999864
No 38
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.82 E-value=2e-08 Score=69.61 Aligned_cols=61 Identities=33% Similarity=0.599 Sum_probs=56.5
Q ss_pred HHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 213 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 213 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
+..+|..+|.+++ |.|+.+|+..+++.++ ...+.+++..++..+|.+++|.|+|+||+..+
T Consensus 2 ~~~~f~~~d~~~~-g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGD-GTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5688999999999 9999999999999998 57899999999999999999999999998654
No 39
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=98.81 E-value=6.5e-08 Score=87.43 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=71.7
Q ss_pred cCCceEEecCC--CCCCceEEEEEeCCCceEeeeeeeeecccCCceeeeeeeeecccccccCCCCCceEEEEEeeecCCC
Q 018687 9 AGYNTFSLART--NNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPH 86 (352)
Q Consensus 9 ~gY~~~~~~r~--~~~~dG~aif~r~~~~~li~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~ 86 (352)
-||.++|..+. ++..-|+||. ||++..+...+.++....|..+.+.+ + .+.++|||+....
T Consensus 101 pgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~~~~Rpilgi~i-------------~-~~~ffstH~~a~~ 163 (271)
T PRK15251 101 PNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPTVASRPIIGIRI-------------G-NDVFFSIHALANG 163 (271)
T ss_pred CCceEEEEecccCCCCceeEEEE---ecccccceEEecCCCCcccceEEEEe-------------c-CeEEEEeeecCCC
Confidence 35667776654 3456699999 77777777777665444555554432 1 2799999998652
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHH
Q 018687 87 DSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLR 138 (352)
Q Consensus 87 ~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~ 138 (352)
. ..|..|+..+.+++..- .+..|+++|||||..|++..+.++.
T Consensus 164 ~----~da~aiV~~I~~~f~~~-----~~~~pw~I~GDFNr~P~sl~~~l~~ 206 (271)
T PRK15251 164 G----TDAGAIVRAVHNFFRPN-----MRHINWMIAGDFNRSPDRLESTLDT 206 (271)
T ss_pred C----ccHHHHHHHHHHHHhhc-----cCCCCEEEeccCCCCCcchhhhhcc
Confidence 2 34778888877776511 1247999999999999999776663
No 40
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.80 E-value=1.3e-08 Score=87.59 Aligned_cols=86 Identities=20% Similarity=0.258 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhhhh-hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCC--HHH----HHHHHHhhCC
Q 018687 192 ASWAEAVFSIIKCQLQKA-SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS--FQE----TDDLWAQADV 264 (352)
Q Consensus 192 t~f~efl~~~~~~~~~~~-~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~--~~e----~~~l~~~~D~ 264 (352)
.+|.+|+........... ...++-+|+.||.+++ |+|+.+||++++..+-- ...+ ++. ++.+|.++|.
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~-G~I~reel~~iv~~~~~----~~~~~~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGD-GFISREELKQILRMMVG----ENDDMSDEQLEDIVDKTFEEADT 158 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHc----cCCcchHHHHHHHHHHHHHHhCC
Confidence 556677766555443332 3588899999999999 99999999999988641 1233 443 5677889999
Q ss_pred CCCcceeHHHHHHHHhch
Q 018687 265 DGNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 265 d~dg~I~~~EF~~~l~~~ 282 (352)
|+||+|+|+||.+.+.+.
T Consensus 159 d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 159 DGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CCCCcCcHHHHHHHHHcC
Confidence 999999999999998764
No 41
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.78 E-value=2.1e-08 Score=76.07 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=58.3
Q ss_pred hhhhhHHHHHhhhccc--CCCCCcCHHHHHHHHH-HhccCCCCCCCC----HHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 208 KASLAENDAFAFFKAD--NNGDVITHSAFCEALR-QVNLAGLPYGLS----FQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d--~~~G~I~~~el~~~l~-~lg~~~~~~~~~----~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+....+...|+.++.. .+ |.|+.+||+.+|. .+| ..++ +++++.||+.+|.|++|.|+|+||+.++.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~-~~Is~~El~~ll~~~~g-----~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHP-DTLYKKEFKQLVEKELP-----NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHhccCCCc-ccCCHHHHHHHHHHHhh-----HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3446778999999866 35 9999999999997 555 4566 89999999999999999999999998886
Q ss_pred ch
Q 018687 281 NL 282 (352)
Q Consensus 281 ~~ 282 (352)
..
T Consensus 79 ~~ 80 (88)
T cd05030 79 KV 80 (88)
T ss_pred HH
Confidence 53
No 42
>PTZ00184 calmodulin; Provisional
Probab=98.76 E-value=4.7e-08 Score=80.99 Aligned_cols=64 Identities=33% Similarity=0.553 Sum_probs=59.4
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
..+..+|+.+|.|++ |+|+.+||+.+|..+| ..++.++++.++..+|.+++|.|+|+||+..+.
T Consensus 84 ~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGN-GFISAAELRHVMTNLG-----EKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCC-CeEeHHHHHHHHHHHC-----CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 567899999999999 9999999999999988 478999999999999999999999999987764
No 43
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.72 E-value=3.9e-08 Score=78.14 Aligned_cols=62 Identities=10% Similarity=0.187 Sum_probs=54.7
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
....+..+|..+|.|++ |+|+.+||..++ ++ ..+..+..+|..+|.|+||.|+++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~--l~-------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYD-GKLSHHELAPIR--LD-------PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCC-CcCCHHHHHHHH--cc-------chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 44678899999999999 999999999876 33 4577889999999999999999999998774
No 44
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=5e-08 Score=79.78 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=62.1
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
.+...++.+|..||.+++ |+|+.+||+-+++.+|+ ....+||.+|+..+|.++.|.|+|++|+..|+.
T Consensus 30 ~q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmralGF-----E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMA-GKIDVEELKVAMRALGF-----EPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred HHHhhHHHHHHhhccCCC-CcccHHHHHHHHHHcCC-----CcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 344678899999999999 99999999999999995 788999999999999999999999999988765
No 45
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.70 E-value=4.6e-08 Score=82.74 Aligned_cols=69 Identities=13% Similarity=0.244 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhch
Q 018687 207 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 207 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~ 282 (352)
+++...+...|+.+|.+.| |+|+..||+.+|..|| .+-|.=-++.||+++|.|.||+|+|.||+ +|+..
T Consensus 95 rkqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLg-----apQTHL~lK~mikeVded~dgklSfrefl-LIfrk 163 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLG-----APQTHLGLKNMIKEVDEDFDGKLSFREFL-LIFRK 163 (244)
T ss_pred HHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhC-----CchhhHHHHHHHHHhhcccccchhHHHHH-HHHHH
Confidence 3455678899999999999 9999999999999999 47888889999999999999999999997 44443
No 46
>PTZ00184 calmodulin; Provisional
Probab=98.69 E-value=2.4e-08 Score=82.78 Aligned_cols=67 Identities=25% Similarity=0.441 Sum_probs=59.9
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
.+...++..|..+|.|++ |.|+.+||..+|..+| ..++.+++..+++.+|.+++|.|+|+||+..+.
T Consensus 8 ~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 344678899999999999 9999999999999988 467888999999999999999999999998765
No 47
>PF14658 EF-hand_9: EF-hand domain
Probab=98.66 E-value=8.6e-08 Score=67.32 Aligned_cols=61 Identities=28% Similarity=0.362 Sum_probs=56.1
Q ss_pred HHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCC-cceeHHHHHHHHh
Q 018687 215 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGN-GVVNYEEFKQRMW 280 (352)
Q Consensus 215 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~d-g~I~~~EF~~~l~ 280 (352)
.+|..||.++. |.|...+|...|+.++- ...++++++.+.+++|+++. |.|+++.|+..|.
T Consensus 2 ~~F~~fD~~~t-G~V~v~~l~~~Lra~~~----~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKT-GRVPVSDLITYLRAVTG----RSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCC-ceEeHHHHHHHHHHHcC----CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 47999999999 99999999999999982 26889999999999999998 9999999998886
No 48
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.62 E-value=2.6e-07 Score=79.64 Aligned_cols=66 Identities=27% Similarity=0.318 Sum_probs=60.7
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhch
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~ 282 (352)
..-+.+|+.||+|++ |.|+..||+.+|.++| ..++++-++.+++++|.-++|.|+|++|+..+...
T Consensus 124 ~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~G-----y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRS-GTIDSSELRQALTQLG-----YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHhcccCCC-CcccHHHHHHHHHHcC-----cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 356799999999999 9999999999999999 58999999999999998889999999999877553
No 49
>PTZ00183 centrin; Provisional
Probab=98.59 E-value=2e-07 Score=78.14 Aligned_cols=66 Identities=26% Similarity=0.442 Sum_probs=58.7
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+...+..+|..+|.+++ |.|+..||..+|+.+| ..++..++..++..+|.+++|.|+|+||+..+.
T Consensus 15 ~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGS-GTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 34568899999999999 9999999999999988 467888999999999999999999999987664
No 50
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.55 E-value=2.6e-07 Score=75.07 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=59.3
Q ss_pred hhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 206 LQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 206 ~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
-+.+..+++++|..+|.|+| |.|+.++|+.+|..+| ...++++++.||+++ .|-|+|.-|+.++-.
T Consensus 27 ~q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-----k~~~d~elDaM~~Ea----~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-----KIASDEELDAMMKEA----PGPINFTVFLTMFGE 92 (171)
T ss_pred hHHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHhC----CCCeeHHHHHHHHHH
Confidence 35677899999999999999 9999999999999999 679999999999987 588999999977754
No 51
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.44 E-value=1.2e-06 Score=66.01 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=54.5
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHH-hc-cCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhch
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQ-VN-LAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg-~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~ 282 (352)
....+..+|..+-.+ . +.++..||+.+|+. ++ + ....-.++.++++|+.+|.|+||.|||+||+.++...
T Consensus 6 ai~~lI~~FhkYaG~-~-~tLsk~Elk~Ll~~Elp~~--l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFAGE-K-NYLNRDDLQKLMEKEFSEF--LKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHcCC-C-CcCCHHHHHHHHHHHhHHH--HcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 445677889988833 3 79999999999965 32 0 0123457889999999999999999999999887654
No 52
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.42 E-value=6.8e-07 Score=77.09 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHh-ccCCC----CCCC-CHHHHHHHHHhhCCC
Q 018687 192 ASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGL----PYGL-SFQETDDLWAQADVD 265 (352)
Q Consensus 192 t~f~efl~~~~~~~~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~~~~----~~~~-~~~e~~~l~~~~D~d 265 (352)
.+|.+|+.+..........+.++.+|+++|.|++ |+|+++|+-.+++.+ .+.+. .... ..+-++.+|+.+|.|
T Consensus 81 i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgd-G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n 159 (193)
T KOG0044|consen 81 IDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGD-GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKN 159 (193)
T ss_pred cCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCC-ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCC
Confidence 3455666554443333445778899999999999 999999998887663 11121 1112 344579999999999
Q ss_pred CCcceeHHHHHHHHhc
Q 018687 266 GNGVVNYEEFKQRMWN 281 (352)
Q Consensus 266 ~dg~I~~~EF~~~l~~ 281 (352)
+||.|+++||+.....
T Consensus 160 ~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 160 KDGKLTLEEFIEGCKA 175 (193)
T ss_pred CCCcccHHHHHHHhhh
Confidence 9999999999987754
No 53
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=2.2e-06 Score=78.36 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=63.0
Q ss_pred CCceEEEEEeeec-CCCCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHHhCCCccccccc
Q 018687 71 GQQEILIVNTHLL-FPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVA 149 (352)
Q Consensus 71 ~~~~~~v~nTHL~-~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~~~g~~~~~~~~ 149 (352)
.++.+.|+|.|.. |+.. .+....|...+.+.|... .-|||+.||||+.|-|..++.|.+.|-......+
T Consensus 186 ~g~~l~v~~lh~~~~~~~---~~~~~~ql~~l~~~i~~~-------~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~a 255 (309)
T COG3021 186 DGTELTVVALHAVNFPVG---TDPQRAQLLELGDQIAGH-------SGPVILAGDFNAPPWSRTAKRMAALGGLRAAPRA 255 (309)
T ss_pred CCCEEEEEeeccccccCC---ccHHHHHHHHHHHHHHcC-------CCCeEEeecCCCcchhHHHHHHHHhcccccchhc
Confidence 5899999999997 5432 122236666666666654 4699999999999999999999776555555444
Q ss_pred cccCCCCCCCCCccccCCCCC-CcccccceeccC
Q 018687 150 HQYTDGDADAHKWVSHRNHRG-NICGVDFIWLRN 182 (352)
Q Consensus 150 ~~~~~~~~~~~~w~~~~~~~~-~~~~ID~i~l~~ 182 (352)
+.. .-++.+..... .-.-|||||.++
T Consensus 256 G~~-------~~~~~p~~~~r~~g~PIDhvf~rg 282 (309)
T COG3021 256 GLW-------EVRFTPDERRRAFGLPIDHVFYRG 282 (309)
T ss_pred cCC-------ccccCHHHHhhccCCCcceeeecC
Confidence 311 12333332211 123499999876
No 54
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.35 E-value=2.6e-06 Score=68.59 Aligned_cols=67 Identities=25% Similarity=0.470 Sum_probs=57.9
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHH----HHHHHhhCCCCCcceeHHHHHHHHhch
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQET----DDLWAQADVDGNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~----~~l~~~~D~d~dg~I~~~EF~~~l~~~ 282 (352)
..+.-+|+.+|-|++ ++|...+|.+.+..+-- ..++++|+ ++++.++|.||||++++.||-.++.+.
T Consensus 108 lK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr----~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTR----DELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred hhhhheeEEeecCCC-CcccHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 455688999999999 99999999999998753 46899886 567889999999999999999888754
No 55
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.28 E-value=1.2e-06 Score=51.67 Aligned_cols=27 Identities=37% Similarity=0.700 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 254 ETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 254 e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
|++++|+.+|.|+||.|+++||+.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 689999999999999999999998775
No 56
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.26 E-value=1.8e-06 Score=80.78 Aligned_cols=99 Identities=16% Similarity=0.283 Sum_probs=77.4
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhch-----h
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNL-----S 283 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~-----~ 283 (352)
....++.+|+.||.+++ |.|+..+|.++|..+.. + +...+-+..++..+|.|.||.+||+||.+.+... .
T Consensus 12 r~~r~~~lf~~lD~~~~-g~~d~~~l~k~~~~l~~---~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~ 86 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKND-GQVDLDQLEKGLEKLDH---P-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYR 86 (463)
T ss_pred HHHHHHHHHHHhccCCC-CceeHHHHHHHHHhcCC---C-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHH
Confidence 34678899999999999 99999999999999883 2 4677888999999999999999999999888552 2
Q ss_pred hhhhhhcccCCCcccccccccccccCcee
Q 018687 284 CSAQIENNCNDNMEDSKDCSEKEILGFAV 312 (352)
Q Consensus 284 ~~~~~~~~~~~~~~~~e~~~~~~~~g~~v 312 (352)
.+...+.+.+|.++-.|........|.++
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l 115 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLKDLGIQL 115 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHHHhCCcc
Confidence 33445567777777665555555555443
No 57
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.22 E-value=1.5e-06 Score=69.56 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=59.2
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCC--CCcceeHHHHHHHHhc
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD--GNGVVNYEEFKQRMWN 281 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d--~dg~I~~~EF~~~l~~ 281 (352)
...+++++|.+||..+| |+|+......+|+.+| .+.|+.|+.+.+...+.+ +--.|+|++|+-++..
T Consensus 9 ~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRalG-----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGD-GKISGSQVGDVLRALG-----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred hHHHHHHHHHHHhccCc-ccccHHHHHHHHHHhc-----CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 44789999999999999 9999999999999999 689999999999998877 4467999999876643
No 58
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.21 E-value=6.3e-06 Score=77.27 Aligned_cols=67 Identities=16% Similarity=0.338 Sum_probs=62.0
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
..+.++.+.|..+|.|.| |.|+.+|+.+.|+.+| .++++++++++++.+|.++++.|+++||...+.
T Consensus 79 ~~E~~l~~~F~~iD~~hd-G~i~~~Ei~~~l~~~g-----i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLEHD-GKIDPNEIWRYLKDLG-----IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HhHHHHHHHHhhhccccC-CccCHHHHHHHHHHhC-----CccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 456788999999999999 9999999999999999 489999999999999999999999999987654
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.18 E-value=1.4e-06 Score=51.32 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=26.6
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHHHh
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALRQV 241 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 241 (352)
+++++|+.||+|++ |+|+.+||+.+|+.|
T Consensus 1 E~~~~F~~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCC-CcCCHHHHHHHHHhC
Confidence 46899999999999 999999999999874
No 60
>PLN02964 phosphatidylserine decarboxylase
Probab=98.09 E-value=7.5e-06 Score=82.83 Aligned_cols=64 Identities=19% Similarity=0.376 Sum_probs=58.8
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
.++++|+.+|.|++ |.|+.+||..+|..++ ...++++++++|+.+|.|++|.|+++||..+|..
T Consensus 180 fi~~mf~~~D~Dgd-G~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDED-GQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCC-CeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 37899999999999 9999999999999888 5688999999999999999999999999988765
No 61
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.07 E-value=1.2e-05 Score=62.66 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=55.7
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
.+......+|..+|. ++ |.|+-++.+.+|.+.| ++.+.+.++|..+|.|+||.++++||+-+|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~-g~isg~~a~~~f~~S~-------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QD-GKISGDQAREFFMKSG-------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-ST-TEEEHHHHHHHHHHTT-------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 445677899999985 67 9999999999999866 7899999999999999999999999987775
No 62
>PLN02964 phosphatidylserine decarboxylase
Probab=98.06 E-value=1.1e-05 Score=81.65 Aligned_cols=67 Identities=12% Similarity=0.252 Sum_probs=57.5
Q ss_pred hhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHH---HHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 206 LQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE---TDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 206 ~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e---~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
..++..+++++|..||.|++ |.| |..+++.+|. ...++++ ++.+|+.+|.|++|.|+|+||+.+|..
T Consensus 138 ~~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 138 VTQEPESACESFDLLDPSSS-NKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred cHHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 34566889999999999999 997 9999999982 2566666 899999999999999999999988764
No 63
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.03 E-value=1.1e-05 Score=76.02 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=60.4
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
....+..+|+.+|.|++ |.||.+||+.+.+-++- .-...++++++-++-+.+|.|+||.||++||+++..
T Consensus 545 ~ks~LetiF~~iD~D~S-G~isldEF~~a~~l~~s-h~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNS-GEISLDEFRTAWKLLSS-HMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred chhhHHHHHHHhccCCC-CceeHHHHHHHHHHHHh-hcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 44678899999999999 99999999999887752 122468999999999999999999999999998764
No 64
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.03 E-value=1.5e-05 Score=68.73 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=57.6
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
....-...+|+.||.|++ |.|+..||-.+|..+- ..-.++-++..|+.+|.|+||.|+++|++.++..
T Consensus 61 d~~~y~~~vF~~fD~~~d-g~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKD-GTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred CHHHHHHHHHHHhcccCC-CCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 344667799999999999 9999999888887754 3566777888899999999999999999987753
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.98 E-value=5.7e-06 Score=49.58 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=26.4
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHH-Hhc
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALR-QVN 242 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~-~lg 242 (352)
+++++|+.+|.|++ |+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~d-G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGD-GFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSS-SEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCC-CcCcHHHHHHHHHHhcC
Confidence 46899999999999 9999999999999 575
No 66
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=97.90 E-value=2.6e-05 Score=69.31 Aligned_cols=137 Identities=16% Similarity=0.195 Sum_probs=89.9
Q ss_pred CCceEEecCCCCCCceEEEEEeCCCceEeeeeeeeecccC-CceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCC
Q 018687 10 GYNTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG-DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS 88 (352)
Q Consensus 10 gY~~~~~~r~~~~~dG~aif~r~~~~~li~~~~~~~~~~~-~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~ 88 (352)
.|..++....... |.+ ...++++.|-+...+.|.+.. .|-.+++...+. |..++++|+||.-+-
T Consensus 153 ~y~i~~~~~~~~~--~~~-~l~~s~~~Vks~~~i~F~NS~M~R~L~I~Ev~v~----------G~Kl~l~tsHLEStr-- 217 (349)
T KOG2756|consen 153 NYEIITGHEEGYF--TAI-MLKKSRVKVKSQEIIPFPNSKMMRNLLIVEVNVS----------GNKLCLMTSHLESTR-- 217 (349)
T ss_pred heeEEEeccceee--eee-eeehhhcCccccceeccCcchhhheeEEEEEeec----------CceEEEEeccccCCC--
Confidence 3555554443222 333 334689999999999987655 576677666653 788999999995421
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHHhCCCccccccccccCCCCCCCCCccccCC
Q 018687 89 SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRN 167 (352)
Q Consensus 89 ~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~ 167 (352)
.....|..|-...++.+...... .++.-||+.||.|=.-. .+-+.=.-.+++++|+.++... -+..+|-+..|
T Consensus 218 ~h~P~r~~qF~~~~~k~~EaIe~--lPnA~ViFGGD~NlrD~-ev~r~~lPD~~vDvWE~lg~p~---~~~FTwDT~~N 290 (349)
T KOG2756|consen 218 GHAPERMNQFKMVLKKMQEAIES--LPNATVIFGGDTNLRDR-EVTRCGLPDNIVDVWEFLGKPK---HCQFTWDTQMN 290 (349)
T ss_pred CCChHHHHHHHHHHHHHHHHHHh--CCCceEEEcCcccchhh-hcccCCCCchHHHHHHHhCCCC---cCceeeecccC
Confidence 12245888888888888776654 36778999999997654 2222111456788888876553 34456666554
No 67
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.64 E-value=8.3e-05 Score=42.10 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=22.0
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 255 TDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 255 ~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
++++|+.+|.|+||.|+++||.+.+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998643
No 68
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.62 E-value=0.00015 Score=48.08 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 229 ITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 229 I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
++.+|++.+|+.+++ .++++.+..+|+.+|.+++|.++-+||.....
T Consensus 2 msf~Evk~lLk~~NI-----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI-----EMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc-----CcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 678999999999995 79999999999999999999999999986653
No 69
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.59 E-value=0.00014 Score=70.22 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=60.5
Q ss_pred hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 207 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 207 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
+.+..++++.|..+| |++ |+|+..||..++...++- ......+|+++++...+.|.+|.|+|+||+..+..
T Consensus 15 q~El~~l~~kF~~~d-~~~-G~v~~~~l~~~f~k~~~~--~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQK-GYVTVYELPDAFKKAKLP--LGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHHhhc-CCC-CeeehHHhHHHHHHhccc--ccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 445578899999999 999 999999999999998741 12345899999999999999999999999987654
No 70
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.57 E-value=0.00011 Score=70.54 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=45.5
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
..++.+|+.+|.|++ |+|+.+||. + ++.+|..+|.|+||.|+++||...+.
T Consensus 334 ~~l~~aF~~~D~dgd-G~Is~~E~~------~------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 334 HAAQEIFRLYDLDGD-GFITREEWL------G------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHHHHHHhCCCCC-CcCcHHHHH------H------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 577899999999999 999999993 2 46789999999999999999988775
No 71
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.54 E-value=6.1e-05 Score=42.65 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.6
Q ss_pred HHHHHhhhcccCCCCCcCHHHHHHHH
Q 018687 213 ENDAFAFFKADNNGDVITHSAFCEAL 238 (352)
Q Consensus 213 ~~~~F~~~D~d~~~G~I~~~el~~~l 238 (352)
++++|+.+|.|++ |.|+.+||++++
T Consensus 1 l~~~F~~~D~d~D-G~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGD-GKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSS-SEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCC-CcCCHHHHHHHC
Confidence 4679999999999 999999999864
No 72
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=97.46 E-value=0.00037 Score=70.35 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=94.9
Q ss_pred CCceEEecCCCC---CCceEEEEEeCCCceEeeeeeeeecccC----------CceeeeeeeeecccccccCCCCCceEE
Q 018687 10 GYNTFSLARTNN---RGDGLLTALHRDYFNVLNYRELLFNDFG----------DRVAQLVHVESVVPFFQNQGGGQQEIL 76 (352)
Q Consensus 10 gY~~~~~~r~~~---~~dG~aif~r~~~~~li~~~~~~~~~~~----------~~v~~~~~l~~~~~~~~~~~~~~~~~~ 76 (352)
-|..+...+.++ ..-+++++|+.++..++....+.-++.. .|.-+.-+++. ..++..|+
T Consensus 553 ~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~--------~~~~ekfv 624 (798)
T COG2374 553 RYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQD--------LSGGEKFV 624 (798)
T ss_pred eEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhh--------ccCCcEEE
Confidence 477777776633 3346999999999988877555322211 12111111111 22455688
Q ss_pred EEEeeecCCCC--C----------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHHhCCCcc
Q 018687 77 IVNTHLLFPHD--S----------SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVS 144 (352)
Q Consensus 77 v~nTHL~~~~~--~----------~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~~~g~~~ 144 (352)
|+--||.-+.. | .+...|.+||.+|..+++.... .....|++|.||||+--.+.+.+.|++.|+..
T Consensus 625 vVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~--~~~d~~~viLGD~N~y~~edpI~~l~~aGy~~ 702 (798)
T COG2374 625 VVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPT--GKADADIVILGDFNDYAFEDPIQALEGAGYMN 702 (798)
T ss_pred EEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcc--cccCCCEEEEeccchhhhccHHHHHhhcCchh
Confidence 88899975321 1 1234799999999999986432 23467999999999999999999998778654
Q ss_pred ccccccccCCCCCCCCCccccCCCCCCcccccceecc
Q 018687 145 SYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLR 181 (352)
Q Consensus 145 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ID~i~l~ 181 (352)
.-...+.. . ..|....+ +..-.+||++..
T Consensus 703 l~~~~~~~----~--~~YSY~f~--G~~gtLDhaLas 731 (798)
T COG2374 703 LAARFHDA----G--DRYSYVFN--GQSGTLDHALAS 731 (798)
T ss_pred hhhhccCC----C--CceEEEEC--CccchHhhhhhh
Confidence 33222221 1 13443333 445558888654
No 73
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.41 E-value=0.00011 Score=58.25 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=45.3
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQ 277 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~ 277 (352)
.....+...|..+|.|+| |.|+..||+.+...+. ..+.-++.+++.+|.|+||.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d-~~L~~~El~~l~~~l~-------~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKD-GVLDRSELKPLRRPLM-------PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-S-SEE-TTTTGGGGSTTS-------TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCC-CccCHHHHHHHHHHHh-------hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344677788999999999 9999999998765442 3444588999999999999999999863
No 74
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00094 Score=51.83 Aligned_cols=63 Identities=27% Similarity=0.478 Sum_probs=47.8
Q ss_pred HHHhhhcccCCCCCcCHHHHHHHHHHhcc---CCC-CCC-CCHHHHHHHH----HhhCCCCCcceeHHHHHHH
Q 018687 215 DAFAFFKADNNGDVITHSAFCEALRQVNL---AGL-PYG-LSFQETDDLW----AQADVDGNGVVNYEEFKQR 278 (352)
Q Consensus 215 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~---~~~-~~~-~~~~e~~~l~----~~~D~d~dg~I~~~EF~~~ 278 (352)
..|+..|-|++ |.|+-=||.+++.-..- .|+ +.+ .++.|++.|+ +.-|.|+||.|||.||++.
T Consensus 71 HYF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 67888899999 99999999999976421 122 334 4566766665 4568999999999999864
No 75
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.00043 Score=63.40 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=51.9
Q ss_pred HHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 214 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 214 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
++-|+.-|.|++ |.++.+||...|.--. -..|.+--|.+-|...|.|+||.|+++||+.-|..
T Consensus 166 e~rFk~AD~d~d-g~lt~EEF~aFLHPEe----~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 166 EERFKAADQDGD-GSLTLEEFTAFLHPEE----HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHhhcccCCC-CcccHHHHHhccChhh----cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 477999999999 9999999998884311 12456666788889999999999999999988864
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.14 E-value=0.00067 Score=40.41 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 254 ETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 254 e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+++.+|+.+|.|+||.|+++||...|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999988775
No 77
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=96.85 E-value=0.0046 Score=58.05 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=59.3
Q ss_pred CCCceEEEEEeCCCceEeee---eeeeec---ccCCceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHH
Q 018687 21 NRGDGLLTALHRDYFNVLNY---RELLFN---DFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVR 94 (352)
Q Consensus 21 ~~~dG~aif~r~~~~~li~~---~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R 94 (352)
-.+-++.||.+.+-..-+.. ...... -.+...+..+.++.. +..++++|+||..+. ..-..|
T Consensus 90 l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~----------~~~~~fv~~HL~a~~--~~~~~R 157 (310)
T smart00128 90 LVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLS----------DTSFCFVNSHLAAGA--SNVEQR 157 (310)
T ss_pred ecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEc----------CcEEEEEeecccccc--chhhhh
Confidence 34557999998877543322 222111 012445556666654 678999999998533 344678
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCCCCEEEecCCCCCCC
Q 018687 95 LHQVYKILQYLELYQTEN---KLNHIPIILCGDWNGSKR 130 (352)
Q Consensus 95 ~~Q~~~l~~~i~~~~~~~---~~~~~pvil~GDFNs~~~ 130 (352)
..|...|++.+. +.... ....-++|++||||-.-+
T Consensus 158 ~~~~~~I~~~~~-f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 158 NQDYKTILRALS-FPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred HHHHHHHHHhcC-CCCCccccccccceEEEecCcceeec
Confidence 888888876552 11100 013567999999998855
No 78
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.79 E-value=0.0027 Score=68.25 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=58.2
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHH-----HHHHHHHhhCCCCCcceeHHHHHHHHhch
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQ-----ETDDLWAQADVDGNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~-----e~~~l~~~~D~d~dg~I~~~EF~~~l~~~ 282 (352)
.++.-+|+.||.+.+ |.++.++|+.+|+.+|-. .++-++ +++++|..+|++.+|.|+..+|+..|.+.
T Consensus 2253 ~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslgY~---lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLGYD---LPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHhchhhc-cCCcHHHHHHHHHhcCCC---CcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 466789999999999 999999999999999831 223344 89999999999999999999999988753
No 79
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0015 Score=59.99 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCC
Q 018687 190 LQASWAEAVFSIIKCQLQKAS-----LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV 264 (352)
Q Consensus 190 ~~t~f~efl~~~~~~~~~~~~-----~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~ 264 (352)
.++++.+|+..+...-..... .+-...|...|.|++ |+++.+|++..+.--+ ......|++-|+-+.|.
T Consensus 215 G~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkD-G~L~~dEl~~WI~P~~-----~d~A~~EA~hL~~eaD~ 288 (325)
T KOG4223|consen 215 GKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKD-GKLDGDELLDWILPSE-----QDHAKAEARHLLHEADE 288 (325)
T ss_pred CceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCC-CccCHHHHhcccCCCC-----ccHHHHHHHHHhhhhcc
Confidence 456678888877765431111 223356677799999 9999999998775434 35677899999999999
Q ss_pred CCCcceeHHHHHH
Q 018687 265 DGNGVVNYEEFKQ 277 (352)
Q Consensus 265 d~dg~I~~~EF~~ 277 (352)
|+||+++++|-+.
T Consensus 289 dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 289 DKDGKLSKEEILE 301 (325)
T ss_pred CccccccHHHHhh
Confidence 9999999999874
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.59 E-value=0.00098 Score=58.61 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=49.7
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
..+..+|...|.|.+ |+||..|+++.++. .. +| ..-+.++-+-.|+.+|+|+||.|+++||.....
T Consensus 101 rklmviFsKvDVNtD-rkisAkEmqrwImekta--EH-fqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTA--EH-FQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHhhcccCcc-ccccHHHHHHHHHHHHH--HH-HHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 567899999999999 99999999998764 21 00 012234456678889999999999999965443
No 81
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.31 E-value=0.0045 Score=34.84 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.7
Q ss_pred HHHHHhhhcccCCCCCcCHHHHHHHHHH
Q 018687 213 ENDAFAFFKADNNGDVITHSAFCEALRQ 240 (352)
Q Consensus 213 ~~~~F~~~D~d~~~G~I~~~el~~~l~~ 240 (352)
++++|+.+|.+++ |.|+.+||..+++.
T Consensus 2 ~~~~f~~~d~~~~-g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGD-GKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCC-CcEeHHHHHHHHHh
Confidence 5789999999999 99999999999875
No 82
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.25 E-value=0.0086 Score=63.66 Aligned_cols=69 Identities=26% Similarity=0.459 Sum_probs=58.4
Q ss_pred hhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 206 LQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 206 ~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
++-....-.+.|+.+|+|+. |.|+..+|+++|..-. ..+..|++-++..+..|.+..++|++|++....
T Consensus 4052 lklkdltssdtfkeydpdgk-giiskkdf~kame~~k------~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4052 LKLKDLTSSDTFKEYDPDGK-GIISKKDFHKAMEGHK------HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred HHHhhccccccchhcCCCCC-ccccHHHHHHHHhccc------cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 33334444578999999999 9999999999998744 689999999999999999999999999976644
No 83
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.16 E-value=0.0069 Score=34.06 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 254 ETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 254 e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
|++.+++.+|.+++|.|++.||...+.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 467899999999999999999987764
No 84
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=96.12 E-value=0.0083 Score=47.32 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEecCCCCCCC------------hhhhHHHHhCCCccccccccccCCCCCCCCCccccC
Q 018687 99 YKILQYLELYQTENKLNHIPIILCGDWNGSKR------------GHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHR 166 (352)
Q Consensus 99 ~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~------------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~ 166 (352)
..+.+.+..+..... ..|+|++||||.... ..+.+.+.+.++...... ....+|....
T Consensus 15 ~~~~~~l~~~~~~~~--~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~T~~~~~ 84 (119)
T PF14529_consen 15 EEFFDQLRQLLKNLP--PAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNLVDLNPP--------GRPPTFISNS 84 (119)
T ss_dssp HHHHHHHHHHHHCCT--TSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTEEE---T--------T---SEEECC
T ss_pred HHHHHHHHHHHHhCC--CCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhceeeeeecC--------CCCCcccCCC
Confidence 344444554444322 228999999999632 233344444555433111 1112333221
Q ss_pred CCCCCcccccceeccCC
Q 018687 167 NHRGNICGVDFIWLRNP 183 (352)
Q Consensus 167 ~~~~~~~~ID~i~l~~~ 183 (352)
....||++|....
T Consensus 85 ----~~s~iD~~~~s~~ 97 (119)
T PF14529_consen 85 ----HGSRIDLILTSDN 97 (119)
T ss_dssp ----CEE--EEEEEECC
T ss_pred ----CCceEEEEEECCh
Confidence 2457999998765
No 85
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.0068 Score=57.78 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=58.6
Q ss_pred ccceeccCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHH------hccCCCCC
Q 018687 175 VDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQ------VNLAGLPY 248 (352)
Q Consensus 175 ID~i~l~~~~~~~~p~~t~f~efl~~~~~~~~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~------lg~~~~~~ 248 (352)
-++||+ .-..+|.+. |.+++..+. ++.......+-+|+.||.|++ |.|+.+||..+.+- +|.. |-.
T Consensus 203 ~~siF~-~lg~~GLIs---fSdYiFLlT--lLS~p~~~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~~-hrd 274 (489)
T KOG2643|consen 203 GDSIFY-KLGESGLIS---FSDYIFLLT--LLSIPERNFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGVR-HRD 274 (489)
T ss_pred CCeeEE-EcCCCCeee---HHHHHHHHH--HHccCcccceeeeeeeecCCC-CcccHHHHHHHHHHHHhcccccee-ccc
Confidence 344543 223444544 444443222 234455677889999999999 99999999887633 2321 111
Q ss_pred CCCHH-----HHHH--HHHhhCCCCCcceeHHHHHHHHhc
Q 018687 249 GLSFQ-----ETDD--LWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 249 ~~~~~-----e~~~--l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
.++.. ++.. ...-+-.+++++++++||++.+-+
T Consensus 275 ~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 275 HFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred CccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 11111 2222 233467888999999999877644
No 86
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=95.92 E-value=0.019 Score=57.52 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=52.4
Q ss_pred eEEEEEeCCCceEeeeeeeeecc------cCCceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHHHHHH
Q 018687 25 GLLTALHRDYFNVLNYRELLFND------FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQV 98 (352)
Q Consensus 25 G~aif~r~~~~~li~~~~~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R~~Q~ 98 (352)
.++||.|++-..-|..-....-. .++..+..+.+.+. +..|+++|+||..++.......|..+.
T Consensus 376 ~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~----------~Ts~cFVn~HLAAg~~~~~~~rRN~D~ 445 (621)
T PLN03191 376 YVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLF----------QSRLCFVCSHLTSGHKDGAEQRRNADV 445 (621)
T ss_pred EEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEc----------CcEEEEEEeccccccccchHHHHHHHH
Confidence 45778877654433322211111 22445555666554 678999999998654322223466777
Q ss_pred HHHHHHHHHHHHh-------cCCCCCCEEEecCCCCCC
Q 018687 99 YKILQYLELYQTE-------NKLNHIPIILCGDWNGSK 129 (352)
Q Consensus 99 ~~l~~~i~~~~~~-------~~~~~~pvil~GDFNs~~ 129 (352)
..|+..+. |... .....-.||++||||-.-
T Consensus 446 ~~I~~~l~-F~~~~~~~~~~~I~dhD~vFWlGDLNYRI 482 (621)
T PLN03191 446 YEIIRRTR-FSSVLDTDQPQTIPSHDQIFWFGDLNYRL 482 (621)
T ss_pred HHHHhccc-cCcccccCCCccccccceEEEecCccccc
Confidence 77765431 1100 001234699999999774
No 87
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.91 E-value=0.012 Score=39.64 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=28.3
Q ss_pred hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHH
Q 018687 208 KASLAENDAFAFFKADNNGDVITHSAFCEALRQ 240 (352)
Q Consensus 208 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 240 (352)
-...++..+|..+|.|++ |+|+.+||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSS-SSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCC-CCCCHHHHHHHHHh
Confidence 345679999999999999 99999999999864
No 88
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.91 E-value=0.044 Score=47.36 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=55.0
Q ss_pred hhhhHHHHHhhhcccCCCCC-cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 209 ASLAENDAFAFFKADNNGDV-ITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~-I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
...-...+++.||.+++ |. |+.++|-++|.-+-. ....++.++-.++.+|.+++|.|+.+|+..++..
T Consensus 64 ~Np~~~rI~~~f~~~~~-~~~v~F~~Fv~~ls~f~~----~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 64 LNPLADRIIDRFDTDGN-GDPVDFEEFVRLLSVFSP----KASKREKLRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred cCcHHHHHHHHHhccCC-CCccCHHHHHHHHhhhcC----CccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 34556789999999999 88 999999999987651 2233447888999999999999999999877753
No 89
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.79 E-value=0.021 Score=42.39 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=52.5
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCC----CCcceeHHHHHHHHhch
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d----~dg~I~~~EF~~~l~~~ 282 (352)
++..+|..+-. +. +.||.++|++.|+.-. ....++.++++.+|..+..+ ..+.+++++|...|...
T Consensus 1 ei~~if~~ys~-~~-~~mt~~~f~~FL~~eQ---~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DK-EYMTAEEFRRFLREEQ---GEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TS-SSEEHHHHHHHHHHTS---S-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CC-CcCCHHHHHHHHHHHh---ccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36788999955 56 8999999999998743 11246899999999998655 47899999999998753
No 90
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=95.62 E-value=0.0044 Score=57.74 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=51.0
Q ss_pred eEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCChhhhHHHHhCCCc
Q 018687 74 EILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFV 143 (352)
Q Consensus 74 ~~~v~nTHL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~~~~~~l~~~g~~ 143 (352)
.+++.+||+.|++ .....|.+|...+++.+.+.... ..+.++|||||..|.+..|-.++..-+.
T Consensus 139 ~li~~~~~~f~~p--~~~~er~r~t~~~lnri~e~~~~----~w~~l~~~l~n~e~gd~~~va~Th~~w~ 202 (378)
T COG5239 139 GLILAVTHLFWHP--YGYYERFRQTYILLNRIGEKDNI----AWVCLFVGLFNKEPGDTPYVANTHLPWD 202 (378)
T ss_pred hhhhhhhHhhccc--ceeehhhhHHHHHHHHHhhhhhc----chhheeeeeccCCCCCceeEEecccccc
Confidence 5899999999887 45588999999999999877542 2578899999999998887666544433
No 91
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.42 E-value=0.02 Score=40.18 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHHHHHHH-hhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHH
Q 018687 186 SRKPLQASWAEAVFSIIKCQ-LQKASLAENDAFAFFKADNNGDVITHSAFCEAL 238 (352)
Q Consensus 186 ~~~p~~t~f~efl~~~~~~~-~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l 238 (352)
.+.+....+..++....... .......+..+|+.+|.|++ |.|+.+||..++
T Consensus 14 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~d-G~i~~~Ef~~~~ 66 (66)
T PF13499_consen 14 DGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGD-GRISFDEFLNFM 66 (66)
T ss_dssp SSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSS-SSEEHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc-CCCcHHHHhccC
Confidence 34444444444444333222 12233567788999999999 999999999875
No 92
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=95.27 E-value=0.085 Score=48.15 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=35.7
Q ss_pred CceEEEEEeeecCCCCCCchhH-----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCCh-hhhHHHH
Q 018687 72 QQEILIVNTHLLFPHDSSLSVV-----------RLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG-HVYKFLR 138 (352)
Q Consensus 72 ~~~~~v~nTHL~~~~~~~~~~~-----------R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~-~~~~~l~ 138 (352)
+..|.++|+||+ |+.+.... |..-...++..+... ..+..|+++.||||-.-+. ...+.|+
T Consensus 79 ~t~fdfVNiHLF--HDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~----~~~~~~lF~fGDfNyRld~~~~~e~L~ 151 (356)
T PTZ00312 79 TVVVNVLNVHLY--NDDDNRVAAASSPSLYTGQRQEALLEAIAECSAF----ISPSDPLFIFGDFNVRLDGHNLLEWLK 151 (356)
T ss_pred CEEEEEEEeecc--CCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhc----cCCCCcEEEeccceeeeccccHHHHhc
Confidence 678999999998 44333332 222222233322222 2346799999999998654 3344553
No 93
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.067 Score=55.75 Aligned_cols=107 Identities=20% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCceEEEEEeCCCceEeeeeeeeecccC------CceeeeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHHH
Q 018687 22 RGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRL 95 (352)
Q Consensus 22 ~~dG~aif~r~~~~~li~~~~~~~~~~~------~~v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R~ 95 (352)
.+--+.||.|.+..+.|..-...-..++ +..|....+... ...||++|.||... .+.-..|.
T Consensus 626 vGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~----------~TsfCFv~SHlAAG--~snv~ERn 693 (1080)
T KOG0566|consen 626 VGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYH----------ATSFCFVCSHLAAG--QSNVEERN 693 (1080)
T ss_pred heeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEec----------cccEEEEecccccc--cchHhhhh
Confidence 3334677888888887766555544443 333344444433 56799999999843 23344555
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCCCEEEecCCCCC---CChhhhHHHHhCC
Q 018687 96 HQVYKILQYLELYQTE-NKLNHIPIILCGDWNGS---KRGHVYKFLRSQG 141 (352)
Q Consensus 96 ~Q~~~l~~~i~~~~~~-~~~~~~pvil~GDFNs~---~~~~~~~~l~~~g 141 (352)
.--..|.+.|. |-.. .-..+-.|+.|||||-. ++.+|.+.++.+.
T Consensus 694 ~DY~tI~r~l~-Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d 742 (1080)
T KOG0566|consen 694 EDYKTIARKLR-FPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQD 742 (1080)
T ss_pred hhHHHHHHhcc-ccCCccccCCceEEEecccceeecCCHHHHHHHHHhcc
Confidence 55555554442 1110 01224569999999977 6678877776543
No 94
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.041 Score=55.96 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=57.1
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
.....+.+|+.+|+..+ |++|-..-+.+|...+ |+...+..||...|.|+||+++-+||+-.|.
T Consensus 193 ~klKY~QlFNa~Dktrs-G~Lsg~qaR~aL~qS~-------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRS-GYLSGQQARSALGQSG-------LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhHHHHHhhhcccccc-cccccHHHHHHHHhcC-------CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 33567899999999999 9999999999998755 7888999999999999999999999986664
No 95
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.81 E-value=0.22 Score=41.73 Aligned_cols=63 Identities=17% Similarity=0.379 Sum_probs=46.5
Q ss_pred HHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 216 AFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 216 ~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
.|..|-..+. ..++-.-|.++|+..++ ....++..+++-+|..+-..+...|+|++|+..|..
T Consensus 7 ~f~~fG~~~~-~~m~~~~F~Kl~kD~~i--~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 7 AFASFGKKNG-TEMDSKNFAKLCKDCGI--IDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHCSSTSTS-SEEEHHHHHHHHHHTSS----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHhcCCcc-ccccHHHHHHHHHHcCC--CCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 3444444444 68999999999999886 334589999999999987777778999999988854
No 96
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.12 Score=50.18 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=56.5
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+.+....-|+.+-.|-+ |+|+-.--+.++.+ .++.-+|+..||+..|.|.||.++..||+..+.
T Consensus 229 QReYYvnQFrtvQpDp~-gfisGsaAknFFtK-------Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPH-GFISGSAAKNFFTK-------SKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHhhhhcccCCcc-cccccHHHHhhhhh-------ccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 34556688999999999 99999999999987 368899999999999999999999999997774
No 97
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.12 E-value=0.1 Score=50.38 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=65.4
Q ss_pred CcccccceeccCC-----CCCCchhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHH----h
Q 018687 171 NICGVDFIWLRNP-----NQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQ----V 241 (352)
Q Consensus 171 ~~~~ID~i~l~~~-----~~~~~p~~t~f~efl~~~~~~~~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~----l 241 (352)
..+-||.||-.=+ ...|+.. |..|+..++....+.....++=+|+.+|.+++ |.|+..||+...+. +
T Consensus 309 t~~ivdRIFs~v~r~~~~~~eGrmd---ykdFv~FilA~e~k~t~~SleYwFrclDld~~-G~Lt~~el~~fyeeq~~rm 384 (493)
T KOG2562|consen 309 TERIVDRIFSQVPRGFTVKVEGRMD---YKDFVDFILAEEDKDTPASLEYWFRCLDLDGD-GILTLNELRYFYEEQLQRM 384 (493)
T ss_pred hhHHHHHHHhhccccceeeecCccc---HHHHHHHHHHhccCCCccchhhheeeeeccCC-CcccHHHHHHHHHHHHHHH
Confidence 3445788886111 2334444 44555444443334556788999999999999 99999999766543 2
Q ss_pred ccCCCCCCCCHH-HHHHHHHhhCCCCCcceeHHHHHH
Q 018687 242 NLAGLPYGLSFQ-ETDDLWAQADVDGNGVVNYEEFKQ 277 (352)
Q Consensus 242 g~~~~~~~~~~~-e~~~l~~~~D~d~dg~I~~~EF~~ 277 (352)
- +...+.+.-+ -+.+|+..+-.-..++|+.++|..
T Consensus 385 ~-~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 385 E-CMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred H-hcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 1 0112344433 456777777777789999999974
No 98
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.88 E-value=0.36 Score=36.37 Aligned_cols=31 Identities=6% Similarity=0.222 Sum_probs=28.1
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
..+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 47 ~~v~~mi~~~D~d~D-G~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQD-SKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCC-CCCcHHHHHHHHHHHH
Confidence 678999999999999 9999999999987754
No 99
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=92.78 E-value=0.67 Score=44.65 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=49.7
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHh-ccCCCCCCCC-------------------------------------
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLPYGLS------------------------------------- 251 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~~~~~~~~~------------------------------------- 251 (352)
..++.+.|+.+|.+++ |+|+...-..+++++ ||.=.|.-+.
T Consensus 463 ~sdL~~eF~~~D~~ks-G~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKS-GKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhHHHHHHHhcChhhc-CeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 3578899999999999 999999988888763 2200000000
Q ss_pred ----HHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 252 ----FQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 252 ----~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
...++.+|+..|.|++|.|+.+||..+.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~ 573 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAW 573 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHH
Confidence 1124667889999999999999997543
No 100
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=92.39 E-value=0.06 Score=51.52 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=43.9
Q ss_pred hhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 219 FFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 219 ~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
++|.+.+ |.||..|.--++.-|- .++...+-.|+.+|.||||.||.+||....
T Consensus 207 F~~lg~~-GLIsfSdYiFLlTlLS-------~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 207 FYKLGES-GLISFSDYIFLLTLLS-------IPERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred EEEcCCC-CeeeHHHHHHHHHHHc-------cCcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 4567788 9999999999888765 455667778999999999999999996433
No 101
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=92.22 E-value=0.17 Score=46.76 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=53.0
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
...++-+|+.|+.+.| |.+...+|.-+|+... .+.+=.+-.++...+...+|+|.|++|.+.+..
T Consensus 295 ~~iiq~afk~f~v~eD-g~~ge~~ls~ilq~~l------gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAED-GISGEHILSLILQVVL------GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHHHHHHhcccccc-cccchHHHHHHHHHhc------CcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 3567889999999999 9999999998888643 344445677889999899999999999887754
No 102
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=92.17 E-value=0.47 Score=35.77 Aligned_cols=52 Identities=4% Similarity=0.059 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHhh--hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 190 LQASWAEAVFSIIKCQLQ--KASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 190 ~~t~f~efl~~~~~~~~~--~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
....+..++......... .....+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 29 s~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~D-G~I~f~EF~~l~~~l~ 82 (89)
T cd05023 29 SKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSD-GQLDFQEFLNLIGGLA 82 (89)
T ss_pred CHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 344555555544332222 233678899999999999 9999999999887764
No 103
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=91.94 E-value=0.34 Score=36.37 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=28.5
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
...+..+|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~d-G~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQD-GQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 4678899999999999 9999999999887754
No 104
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=91.89 E-value=0.55 Score=43.08 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=45.8
Q ss_pred CceEEEEEeeecCCCCCC-----------chhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCCCh-hhhHHHHh
Q 018687 72 QQEILIVNTHLLFPHDSS-----------LSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG-HVYKFLRS 139 (352)
Q Consensus 72 ~~~~~v~nTHL~~~~~~~-----------~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~~~-~~~~~l~~ 139 (352)
++.|-+||.||+ |+.+ ....|-.|..+++..|..-- .....+++.||||..-+| .+...|.+
T Consensus 168 ~k~fdfVN~hLF--hD~snla~~~sspt~ys~~R~~al~~vL~el~~~~----~~~~~~fVfGdfNfrLds~s~ln~l~a 241 (391)
T KOG1976|consen 168 GKEFDFVNLHLF--HDVSNLATKNSSPTKYSSKREQALEMVLKELDEEG----LRNDAIFVFGDFNFRLDSTSLLNYLAA 241 (391)
T ss_pred Cceeeeeehhhh--cchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhc----cCceEEEEecccccccchHHHHHHHhc
Confidence 789999999996 3311 34468888888888776432 335589999999999655 56677754
Q ss_pred CCC
Q 018687 140 QGF 142 (352)
Q Consensus 140 ~g~ 142 (352)
...
T Consensus 242 ~q~ 244 (391)
T KOG1976|consen 242 TQL 244 (391)
T ss_pred CCc
Confidence 433
No 105
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.76 E-value=0.031 Score=39.91 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=37.1
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh----CCC---CCcceeHHHHHHHH
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA----DVD---GNGVVNYEEFKQRM 279 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~----D~d---~dg~I~~~EF~~~l 279 (352)
.+.+.++|+.+ .++. ++||..||++.|.. ++++-+++.+ +.+ .-|.+||..|+..|
T Consensus 5 ~eqv~~aFr~l-A~~K-pyVT~~dLr~~l~p------------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGK-PYVTEEDLRRSLTP------------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSS-SCEEHHHHHHHS-C------------CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCC-CcccHHHHHHHcCc------------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 36788999999 6666 99999999988632 1223333332 222 13779999997544
No 106
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=0.61 Score=47.85 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=42.1
Q ss_pred cCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 223 DNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 223 d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
-+. |+|+-..-+.+|-+.| |...-+.+||...|.|+||++|-.||--.|
T Consensus 27 p~~-gfitg~qArnfflqS~-------LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 27 PGQ-GFITGDQARNFFLQSG-------LPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred CCC-CccchHhhhhhHHhcC-------CChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 355 9999999999998866 566778999999999999999999996544
No 107
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=91.43 E-value=0.29 Score=45.50 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=52.3
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
...+-..|..+|.|.+ |.++..||..+-. .-.+.=|+.+|+..|...||.|+-.|+..-.++
T Consensus 249 Kds~gWMFnklD~N~D-l~Ld~sEl~~I~l---------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYD-LLLDQSELRAIEL---------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccc-cccCHHHhhhhhc---------cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3567899999999999 9999999987642 234566899999999999999999999876654
No 108
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=91.42 E-value=0.74 Score=34.90 Aligned_cols=33 Identities=3% Similarity=0.191 Sum_probs=29.2
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
....+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 51 ~~~~v~~i~~elD~n~d-G~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKD-NEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHH
Confidence 34678899999999999 9999999999998764
No 109
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.17 E-value=0.66 Score=35.06 Aligned_cols=52 Identities=6% Similarity=0.034 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHhh--hhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 190 LQASWAEAVFSIIKCQLQ--KASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 190 ~~t~f~efl~~~~~~~~~--~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
.+..+++.+..-+...+. .....+.++|+.+|.|+| |.|+.+||-.++..+.
T Consensus 25 sk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~D-g~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 25 NRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRD-GKVGFQSFFSLIAGLL 78 (91)
T ss_pred CHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 345555666544444332 344778899999999999 9999999999887764
No 110
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.16 E-value=0.45 Score=43.98 Aligned_cols=92 Identities=10% Similarity=0.181 Sum_probs=61.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHh--hh-----------h-hhhHHHHHhhhcccCCCCCcCHHHH---HHHHHHhcc
Q 018687 181 RNPNQSRKPLQASWAEAVFSIIKCQL--QK-----------A-SLAENDAFAFFKADNNGDVITHSAF---CEALRQVNL 243 (352)
Q Consensus 181 ~~~~~~~~p~~t~f~efl~~~~~~~~--~~-----------~-~~~~~~~F~~~D~d~~~G~I~~~el---~~~l~~lg~ 243 (352)
+.-..+..+.++.|..-+...+..-+ .. . +..+...|..+|.|.+ +.|...|. +++|..-.
T Consensus 289 R~l~gC~e~KKteFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~n-n~i~rrEwKpFK~~l~k~s- 366 (421)
T KOG4578|consen 289 RRLNGCPEKKKTEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSN-NDIERREWKPFKRVLLKKS- 366 (421)
T ss_pred cccCCCCcchhhHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeeeeccccc-CccchhhcchHHHHHHhhc-
Confidence 33466667777766544433332211 10 1 1234578999999999 99999994 55665422
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 244 AGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 244 ~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
-...-.+.|++..|.|+|-+|++.|++.-|-
T Consensus 367 ------~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 367 ------KPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred ------cHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 2334568899999999999999999986664
No 111
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.16 E-value=0.31 Score=48.41 Aligned_cols=65 Identities=28% Similarity=0.343 Sum_probs=57.9
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
...+.-|.++|.|+. |+++.+++.++|+..+ .+.+++.++++++++|.+-+|.+...||.+.+..
T Consensus 593 ~~~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~-----~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKK-AYQAIADVLKVLKSEN-----VGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHH-HHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 345578999999999 9999999999999987 4799999999999999999999999999877753
No 112
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=90.84 E-value=0.53 Score=31.34 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=26.5
Q ss_pred hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHh
Q 018687 207 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQV 241 (352)
Q Consensus 207 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 241 (352)
.-....+..+|+..|.+++ |.+..+||...++.|
T Consensus 17 ~~~~~yA~~LFq~~D~s~~-g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 17 EMDDEYARQLFQECDKSQS-GRLEGEEFEEFYKRL 50 (51)
T ss_dssp ---HHHHHHHHHHH-SSSS-SEBEHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhcccCC-CCccHHHHHHHHHHh
Confidence 3345677899999999999 999999999988764
No 113
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=90.74 E-value=0.46 Score=31.62 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=25.8
Q ss_pred hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHH
Q 018687 207 QKASLAENDAFAFFKADNNGDVITHSAFCEAL 238 (352)
Q Consensus 207 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l 238 (352)
......+..+|..+|.+++ |.|+.++|..++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~-~~l~~~ef~~~~ 62 (63)
T cd00051 32 GLSEEEIDEMIREVDKDGD-GKIDFEEFLELM 62 (63)
T ss_pred CCCHHHHHHHHHHhCCCCC-CeEeHHHHHHHh
Confidence 3344667889999999999 999999998765
No 114
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=90.64 E-value=0.69 Score=34.73 Aligned_cols=33 Identities=3% Similarity=0.096 Sum_probs=28.9
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
...++.++|+.+|.|++ |.|+.+||-.++..+.
T Consensus 49 t~~ev~~m~~~~D~d~d-G~Idf~EFv~lm~~l~ 81 (88)
T cd05029 49 QDAEIAKLMEDLDRNKD-QEVNFQEYVTFLGALA 81 (88)
T ss_pred CHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHH
Confidence 44688899999999999 9999999998887754
No 115
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=89.20 E-value=1.3 Score=33.49 Aligned_cols=34 Identities=6% Similarity=0.225 Sum_probs=30.1
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhcc
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNL 243 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 243 (352)
....+..+|+.+|.|++ |.|+.+||..++..+++
T Consensus 49 s~~ei~~~~~~~D~~~d-g~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 49 DPMAVDKIMKDLDQNRD-GKVNFEEFVSLVAGLSI 82 (94)
T ss_pred cHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHHH
Confidence 34678899999999999 99999999999988773
No 116
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=88.54 E-value=0.6 Score=45.24 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=44.4
Q ss_pred HHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh----CCCCCcceeHHHHHHHHhc
Q 018687 216 AFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA----DVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 216 ~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~----D~d~dg~I~~~EF~~~l~~ 281 (352)
-|-.+|.|++ |.|+.++|++.-.. .++.--++.+|.++ -.-.+|++||++|+..+..
T Consensus 283 kFweLD~Dhd-~lidk~~L~ry~d~--------tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 283 KFWELDTDHD-GLIDKEDLKRYGDH--------TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred HHhhhccccc-cccCHHHHHHHhcc--------chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 3777899999 99999999876543 46777788999833 3446899999999987753
No 117
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.14 E-value=0.69 Score=42.48 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=43.7
Q ss_pred HHHhhhcccCCCCCcCHHHHHHHHHH-hccCCCCCCCCHHHH-----------HHHHHhhCCCCCcceeHHHHHHHH
Q 018687 215 DAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQET-----------DDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 215 ~~F~~~D~d~~~G~I~~~el~~~l~~-lg~~~~~~~~~~~e~-----------~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
..|.+.|.|++ |+++..||..++.. |---=. .+..++++ +.+|+.+|+|.|-.|+.+||+..-
T Consensus 248 TFF~LHD~NsD-GfldeqELEaLFtkELEKvYd-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSD-GFLDEQELEALFTKELEKVYD-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCc-ccccHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 45678899999 99999999988754 210000 11122222 346889999999999999998544
No 118
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=88.03 E-value=0.54 Score=37.36 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=25.3
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHH
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALR 239 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~ 239 (352)
..-+...|..+|.|++ |.||.+|+..+|.
T Consensus 79 e~~~~~f~~~~D~n~D-g~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKD-GSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCC-CCCCHHHHHHHHh
Confidence 3455789999999999 9999999999983
No 119
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=87.39 E-value=1.2 Score=43.62 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCC-CCCCCCHHHHHHHHHhhCCCCCcce
Q 018687 192 ASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAG-LPYGLSFQETDDLWAQADVDGNGVV 270 (352)
Q Consensus 192 t~f~efl~~~~~~~~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~-~~~~~~~~e~~~l~~~~D~d~dg~I 270 (352)
++|.+|...- ..+.....-...+|..||+.++ |.+|.+++.+++.+..+.. .+...+.+-|+.. +..+.--.+
T Consensus 91 isf~eF~afe--~~lC~pDal~~~aFqlFDr~~~-~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~---Fg~~~~r~~ 164 (694)
T KOG0751|consen 91 ISFQEFRAFE--SVLCAPDALFEVAFQLFDRLGN-GEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH---FGDIRKRHL 164 (694)
T ss_pred ccHHHHHHHH--hhccCchHHHHHHHHHhcccCC-CceehHHHHHHHhccccccCCCccCCcchHHHH---hhhHHHHhc
Confidence 4455554321 1222334566799999999999 9999999999999887643 2344444444443 333344568
Q ss_pred eHHHHHHHHhc
Q 018687 271 NYEEFKQRMWN 281 (352)
Q Consensus 271 ~~~EF~~~l~~ 281 (352)
+|.||.+.+..
T Consensus 165 ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 165 NYAEFTQFLHE 175 (694)
T ss_pred cHHHHHHHHHH
Confidence 88888877754
No 120
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=87.00 E-value=2.3 Score=31.91 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=28.8
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
....+.++|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 s~~~v~~i~~~~D~d~~-G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 50 DADAVDKIMKELDENGD-GEVDFQEFVVLVAALT 82 (92)
T ss_pred CHHHHHHHHHHHCCCCC-CcCcHHHHHHHHHHHH
Confidence 34678899999999999 9999999999987754
No 121
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=86.73 E-value=2.7 Score=31.51 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=28.0
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
...+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 50 ~~~v~~~i~~~D~n~d-G~v~f~eF~~li~~~~ 81 (88)
T cd05027 50 QEVVDKVMETLDSDGD-GECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 3568899999999999 9999999998887654
No 122
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=86.70 E-value=0.95 Score=34.39 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 254 ETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 254 e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
++..+|..+|.|++|.|+++|+...|..
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 4677788999999999999999887754
No 123
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=86.58 E-value=2.6 Score=29.04 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=27.5
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQV 241 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 241 (352)
....+.++|+.+|.+++ |.|+.+||..++..+
T Consensus 31 ~~~~~~~i~~~~d~~~~-g~i~~~ef~~~~~~~ 62 (67)
T cd00052 31 PRSVLAQIWDLADTDKD-GKLDKEEFAIAMHLI 62 (67)
T ss_pred CHHHHHHHHHHhcCCCC-CcCCHHHHHHHHHHH
Confidence 34567899999999999 999999999888654
No 124
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.41 E-value=0.55 Score=36.84 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 248 YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 248 ~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+.|++++++.++.++-.|..|.|.|.||+..+.
T Consensus 2 qiLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 2 QILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ----HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 358999999999999999999999999986654
No 125
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=86.29 E-value=2 Score=45.29 Aligned_cols=69 Identities=12% Similarity=-0.056 Sum_probs=55.5
Q ss_pred hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCH-----HHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 207 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSF-----QETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 207 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~-----~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
+....+++.+|+.+|+... |.+++++|.++|..+|. .... .|+..++...|.+.-|.++|.+|...|.+
T Consensus 743 Q~v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg~-----~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDG-GAASPEELLRCLMSLGY-----NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcCc-----ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 3445789999999999999 99999999999999993 3332 24455667778888899999999987754
No 126
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=85.03 E-value=1.6 Score=38.80 Aligned_cols=61 Identities=18% Similarity=0.432 Sum_probs=50.9
Q ss_pred HHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 214 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 214 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
++.=..+|.|.+ |.+|.+||.....-++ ..++-.++..+|...|.+++.+++.+|.++.-|
T Consensus 284 kEFeElIDsNhD-GivTaeELe~y~dP~n-----~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~ 344 (362)
T KOG4251|consen 284 KEFEELIDSNHD-GIVTAEELEDYVDPQN-----FRLALNEVNDIMALTDANNDEKLSLEELLERDW 344 (362)
T ss_pred HHHHHHhhcCCc-cceeHHHHHhhcCchh-----hhhhHHHHHHHHhhhccCCCcccCHHHHHHHHh
Confidence 344467899999 9999999999876666 367788999999999999999999999986443
No 127
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=84.10 E-value=3.9 Score=30.25 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=27.9
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
...+..+|..+|.+++ |.|+.+||..++..+.
T Consensus 50 ~~ei~~i~~~~d~~~~-g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 50 PEAVDKIMKDLDVNKD-GKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhccCCC-CcCcHHHHHHHHHHHH
Confidence 4678899999999999 9999999999887643
No 128
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=84.01 E-value=2.5 Score=40.88 Aligned_cols=92 Identities=16% Similarity=0.064 Sum_probs=51.4
Q ss_pred eEEEEEeCCCceEeeeeeeeecccC-----Cc-eeeeeeeeecccccccCCCCCceEEEEEeeecCCCCCCchhHHHHHH
Q 018687 25 GLLTALHRDYFNVLNYRELLFNDFG-----DR-VAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQV 98 (352)
Q Consensus 25 G~aif~r~~~~~li~~~~~~~~~~~-----~~-v~~~~~l~~~~~~~~~~~~~~~~~~v~nTHL~~~~~~~~~~~R~~Q~ 98 (352)
-..+|++.+...+++.-.-.-.+++ .+ .+....... ....++++|+||...- ..-..|....
T Consensus 121 ~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~----------~~t~~cFv~shlaag~--~N~eeR~~Dy 188 (460)
T COG5411 121 LLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNY----------ERTSFCFVNSHLAAGV--NNIEERIFDY 188 (460)
T ss_pred ceEEeeeccccceeccccccccccccceecccccccceeEEe----------ecCCcEEEecchhccc--ccHHHHHHHH
Confidence 3667888888777765443333332 11 111111111 1457999999997433 4556777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEecCCCCC
Q 018687 99 YKILQYLELYQTENKLNHIPIILCGDWNGS 128 (352)
Q Consensus 99 ~~l~~~i~~~~~~~~~~~~pvil~GDFNs~ 128 (352)
+.+..-|.--....-.....+++.||||-.
T Consensus 189 ~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 189 RSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred HHHHHheecCCCceecccceEEEecccCce
Confidence 777665531100001124459999999965
No 129
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=80.85 E-value=2.4 Score=41.06 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchhhhhhhhcccCCCccccc
Q 018687 248 YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSAQIENNCNDNMEDSK 300 (352)
Q Consensus 248 ~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~~~~~~~~~~~~~~~~~e 300 (352)
......+++.+|+.+|.|+||.|+++||+. ...++...+.+..|.++.+|
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---~~~~F~~~D~d~DG~Is~eE 378 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---SDAVFDALDLNHDGKITPEE 378 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---HHHHHHHhCCCCCCCCcHHH
Confidence 456778899999999999999999999963 12345555566667766443
No 130
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=80.13 E-value=6.8 Score=33.21 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=52.3
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCC---------------------------------------C-----
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAG---------------------------------------L----- 246 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~---------------------------------------~----- 246 (352)
..|++=-.+||+|+| |.|.+-|--+.++.+|+.- |
T Consensus 7 T~LQqHvaFFDrd~D-GiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKD-GIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred cHHhhhhceeCCCCC-eeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 345666678999999 9999999877777765310 0
Q ss_pred ----CCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhchh
Q 018687 247 ----PYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS 283 (352)
Q Consensus 247 ----~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~~~ 283 (352)
--.+.++..++||..++..+.+.+++.|...++..+.
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 0012356779999999988888999999987776533
No 131
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=79.33 E-value=9.1 Score=37.72 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=28.8
Q ss_pred hhHHHHHhhh-cccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 211 LAENDAFAFF-KADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 211 ~~~~~~F~~~-D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
+++..+.... |.-+| |.|+.+||+..=.-++ ..+......|.-+|..++|.++|++|...+
T Consensus 73 ~~~v~Lla~iaD~tKD-glisf~eF~afe~~lC-------~pDal~~~aFqlFDr~~~~~vs~~~~~~if 134 (694)
T KOG0751|consen 73 DKIVRLLASIADQTKD-GLISFQEFRAFESVLC-------APDALFEVAFQLFDRLGNGEVSFEDVADIF 134 (694)
T ss_pred hHHHHHHHhhhhhccc-ccccHHHHHHHHhhcc-------CchHHHHHHHHHhcccCCCceehHHHHHHH
Confidence 3444444444 22344 5555555554322222 223444455555555555555555554444
No 132
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=76.79 E-value=4.2 Score=42.02 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=54.8
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
.-+..+|...|++++ |.++..+...+++.++. .+....+..++++.|...++++..++|++.-
T Consensus 136 ~wi~~~~~~ad~~~~-~~~~~~~~~~~~~~~n~-----~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKN-GHMSFDEVLDLLKQLNV-----QLSESKARRLFKESDNSQTGKLEEEEFVKFR 198 (746)
T ss_pred HHHHHHHHHHccccc-cccchhhHHHHHHHHHH-----hhhHHHHHHHHHHHHhhccceehHHHHHHHH
Confidence 445688899999999 99999999999999884 7888899999999998899999999987544
No 133
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=75.71 E-value=5.4 Score=37.14 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=53.1
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
..++..|.+||.+++ |.++..|--..|.-+.= ...+.+-|+--++.++.+.||.+.-.+|.-++
T Consensus 259 d~l~~~f~LFde~~t-g~~D~re~v~~lavlc~----p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTT-GNGDYRETVKTLAVLCG----PPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhhhhhheecCCCC-CcccHHHHhhhheeeeC----CCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 567899999999999 99999988777765431 45778888999999999999999998886444
No 134
>PF14658 EF-hand_9: EF-hand domain
Probab=75.23 E-value=7.7 Score=27.39 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=28.2
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHH
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQ 240 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 240 (352)
...+++.+-+.+|+++.+|.|+.+.|..+|+.
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 44689999999999987799999999999975
No 135
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=73.57 E-value=6 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=23.8
Q ss_pred hhhHHHHHhhhc-ccCCCCCcCHHHHHHHHHH
Q 018687 210 SLAENDAFAFFK-ADNNGDVITHSAFCEALRQ 240 (352)
Q Consensus 210 ~~~~~~~F~~~D-~d~~~G~I~~~el~~~l~~ 240 (352)
...+..+|..+- .++++..++..||+.+|+.
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345678888874 4565579999999999976
No 136
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=73.26 E-value=5.2 Score=32.73 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC-------CcceeHHHHHHHHh
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG-------NGVVNYEEFKQRMW 280 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~-------dg~I~~~EF~~~l~ 280 (352)
+.||+.||.++=+-+- .+...+++++++|..+| ++.|||+.|...|.
T Consensus 6 ~~lsp~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp S-S-HHHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 7899999988765543 46668999999996555 56899999987664
No 137
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=72.34 E-value=5.1 Score=34.74 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 254 ETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 254 e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
.+..+|+.+|.|.||.||+.|...+|-+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEK 127 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEK 127 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4578899999999999999999777744
No 138
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=68.62 E-value=4.4 Score=31.44 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=26.9
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQV 241 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 241 (352)
....+..+|.+-|.|++ |+++.+||.-+|.-+
T Consensus 41 ~~~~L~~IW~LaD~~~d-G~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 41 PRDVLAQIWNLADIDND-GKLDFEEFAIAMHLI 72 (104)
T ss_dssp SHHHHHHHHHHH-SSSS-SEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCCCC-CcCCHHHHHHHHHHH
Confidence 34788999999999999 999999999888654
No 139
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.77 E-value=1.9 Score=46.04 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=55.7
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
....+.++|...|.+.+ |.|+-.+....+...| ++...+..+|...|.++.|.|++.||.-.|.
T Consensus 281 d~~~~~~if~q~d~~~d-G~I~s~~~~~~f~~~g-------l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDND-GSISSNEARNIFLPFG-------LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHHhccccCC-CcccccccccccccCC-------CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 33556679999999999 9999999999988755 7888999999999999999999999975553
No 140
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=64.69 E-value=16 Score=23.66 Aligned_cols=41 Identities=17% Similarity=0.063 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 231 HSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 231 ~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
.+|...+|..|| +++.|++..++.+.. ...++-+|.++...
T Consensus 3 ~~d~~~AL~~LG-------y~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 3 LEDALEALISLG-------YSKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 367889999988 799999999999865 44566787776544
No 141
>PLN02952 phosphoinositide phospholipase C
Probab=63.48 E-value=35 Score=35.03 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=48.0
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhC-------CCCCcceeHHHHHHHHhc
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD-------VDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D-------~d~dg~I~~~EF~~~l~~ 281 (352)
-.++..+|..+-. +. +.++.++|...|+... +. ...+.++++.++..+- ..+.+.++++.|...|..
T Consensus 37 r~ei~~lf~~~~~-~~-~~mt~~~l~~FL~~~Q--~e-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 37 PDDVKDVFCKFSV-GG-GHMGADQLRRFLVLHQ--DE-LDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred hHHHHHHHHHHhC-CC-CccCHHHHHHHHHHhC--CC-cCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 4688999998854 44 6899999999998865 11 1356777888876541 112345899999998875
No 142
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=62.02 E-value=52 Score=24.80 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=41.0
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHh-------ccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQV-------NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-------g~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
+.++-+|..+ .|.+ |.++..-|...|+.+ | .+....-.+..++..|... ...-.|+-++|+.-|..
T Consensus 3 dKyRylFsli-sd~~-g~~~~~~l~~lL~d~lqip~~vg-E~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSN-GCMDQRKLGLLLHDVLQIPRAVG-EGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TT-S-B-HHHHHHHHHHHHHHHHHTT--GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCC-CCCcHHHHHHHHHHHHHHHHHhC-ccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4567788888 6778 999999998888654 2 0011223667788888876 35667999999987753
No 143
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=60.42 E-value=28 Score=28.73 Aligned_cols=60 Identities=10% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHH--HHHhhCCCCCcceeHHHHHHHHhc
Q 018687 215 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDD--LWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 215 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~--l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
++-..|-.||. |.+|.++|-.++.-+. .+.+.+++. .++.+|-|+|+.|--.+..+.+.+
T Consensus 75 ri~e~FSeDG~-GnlsfddFlDmfSV~s------E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 75 RICEVFSEDGR-GNLSFDDFLDMFSVFS------EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHhccCCC-CcccHHHHHHHHHHHH------hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHH
Confidence 44455667999 9999999999988766 455555543 467889999999988888766654
No 144
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=60.08 E-value=12 Score=28.61 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
|.++..|...+-.-+. ....+++++.+.++..+..-.+...++.+|.+.+..
T Consensus 14 G~v~~~E~~~i~~~l~---~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 14 GEYDEEERAAIDRLLA---ERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred CCCCHHHHHHHHHHHH---HHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999766543322 001478889999998888777777899999877654
No 145
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=57.16 E-value=32 Score=38.76 Aligned_cols=56 Identities=16% Similarity=0.338 Sum_probs=32.6
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh----hCCC----CCcceeHHHHHHHHh
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ----ADVD----GNGVVNYEEFKQRMW 280 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~----~D~d----~dg~I~~~EF~~~l~ 280 (352)
.++..+|+.+|. +. -||+..++.. .++.++++-.|.. +|+. --+.++|.+|++.++
T Consensus 2334 ~eIE~AfraL~a-~~-~yvtke~~~~------------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2334 EEIEDAFRALDA-GK-PYVTKEELYQ------------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred HHHHHHHHHhhc-CC-ccccHHHHHh------------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 467777777777 44 5777777653 3455554444433 3332 124577777776654
No 146
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=55.49 E-value=13 Score=37.87 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=48.2
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHH
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 275 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF 275 (352)
.-+..+|+.+|.+.+ |.|+..+|-..|..+. ..-.-+.+.-+++.+|.+++ ..+-+|-
T Consensus 555 ~~~~rlF~l~D~s~~-g~Ltf~~lv~gL~~l~-----~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMT-GLLTFKDLVSGLSILK-----AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCc-ceeEHHHHHHHHHHHH-----hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 456799999999999 9999999999998876 24445667888999999998 8777765
No 147
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.49 E-value=9.9 Score=36.08 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=51.3
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHH-HHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE-TDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e-~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
++.++++|+.+|+.++ |+|+.+-|+.+|+.++. ..++.+ |-.+=+.+|..+-|.|=.+.|+..+..
T Consensus 308 s~q~rR~f~a~d~~d~-nfis~s~~~~vm~~~N~-----~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDN-NFISCSGLQIVMTALNR-----LVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CHHHHhhhhccCccCC-CeeecHHHHHHHHHhcc-----cccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 4689999999999999 99999999999999883 455544 343444578888888888888755543
No 148
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.33 E-value=37 Score=27.72 Aligned_cols=57 Identities=23% Similarity=0.143 Sum_probs=30.6
Q ss_pred CceEEEEEeeecCCCCCCchhH-HHHHHHHHHHHHHHHHHhcCCCCC---------CEEEecCCCCCCChh
Q 018687 72 QQEILIVNTHLLFPHDSSLSVV-RLHQVYKILQYLELYQTENKLNHI---------PIILCGDWNGSKRGH 132 (352)
Q Consensus 72 ~~~~~v~nTHL~~~~~~~~~~~-R~~Q~~~l~~~i~~~~~~~~~~~~---------pvil~GDFNs~~~~~ 132 (352)
+..++.+|.|+..+. ..... |..-...+++...-... ..... -||..||+|....+.
T Consensus 58 ~~~~~~v~~hl~~~~--~~~~~~r~~d~~~i~~~~~~~~~--~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 58 QTSFCFVISHLTSGV--HKVYERRNEDYQEILNGLRFPSV--SPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred CceEEEEEecccccc--hhhHHHhhccHHHHHhhcccccc--CcccccccccccccEEEEecceeeeecCc
Confidence 678999999997532 22233 33333333332221100 11122 378999999996653
No 149
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.78 E-value=27 Score=28.62 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=42.1
Q ss_pred HHHhhhcccCCCCCcCHHHHH---HHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 215 DAFAFFKADNNGDVITHSAFC---EALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 215 ~~F~~~D~d~~~G~I~~~el~---~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
-+|+.++.| |.++..|.. +++... ..++.+++..++.....-+...||+-.|-..|.+
T Consensus 34 Llf~Vm~AD---G~v~~~E~~a~r~il~~~------f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEAD---GTVSESEREAFRAILKEN------FGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhcc---cCcCHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567776655 778887754 444442 3689999999998887777788988888766653
No 150
>PLN02230 phosphoinositide phospholipase C 4
Probab=49.57 E-value=65 Score=33.13 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=48.1
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCC-------CCCcceeHHHHHHHHhc
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV-------DGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~-------d~dg~I~~~EF~~~l~~ 281 (352)
.+++.+|..+- ++. +.++.++|.+.|+.-. +.....+.++++.++..+-. -+.+.++.+.|...|+.
T Consensus 29 ~ei~~lf~~~s-~~~-~~mt~~~l~~FL~~~Q--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYA-DGD-AHMSPEQLQKLMAEEG--GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHh-CCC-CccCHHHHHHHHHHhC--CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 57888999884 445 7999999999998854 11123467778888865421 12456999999998876
No 151
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=49.53 E-value=29 Score=32.75 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=52.0
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 279 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l 279 (352)
-...|+++|..+=.+.+ +......+..+-..+. ....+.-..++.-||..+|.|.||.++-.|...+-
T Consensus 209 lg~RL~dWF~~lhe~s~-~~~~~ss~~~~~~~~d--~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 209 LGNRLRDWFKALHEDSS-QNDKTSSLHSAASGFD--TSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred HHHHHHHHHHHHHhhhh-ccCcchhhcccccccc--cccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 34578999999988888 8888777776644432 01135678899999999999999999999986433
No 152
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=49.40 E-value=21 Score=36.17 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=40.4
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQ 277 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~ 277 (352)
.-+..+|..||.|+| |.++..||+.++...+-. .|..-..++.- -.+..|.++|+-|+.
T Consensus 315 ~Fl~~~f~~~D~d~D-g~L~p~El~~LF~~~P~~-pW~~~~~~~~t------~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDND-GALSPEELKDLFSTAPGS-PWTSSPYKDST------VKNERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHhccCCCC-CCcCHHHHHHHhhhCCCC-CCCCCcccccc------eecccceeehhhHHH
Confidence 457799999999999 999999999999987621 11100111111 112578899999974
No 153
>PLN02222 phosphoinositide phospholipase C 2
Probab=48.95 E-value=54 Score=33.55 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=49.3
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCC-CCCcceeHHHHHHHHhc
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV-DGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~-d~dg~I~~~EF~~~l~~ 281 (352)
.++..+|..+-. + +.++.++|...|+...- . ...+.+.++.+|..+.. -..+.++++.|...|..
T Consensus 25 ~ei~~if~~~~~--~-~~mt~~~l~~FL~~~Q~--~-~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--N-GVMTVDHLHRFLIDVQK--Q-DKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--C-CCcCHHHHHHHHHHhcC--C-ccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 577888888753 5 79999999999988651 1 13577888999987632 24567999999999975
No 154
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=47.42 E-value=67 Score=21.10 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=32.3
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ 261 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~ 261 (352)
....|..+|.. + .+.+.+++..+-..+| ++..+|..+|..
T Consensus 11 ~~~~Le~~f~~-----~-~~P~~~~~~~la~~~~-------l~~~qV~~WF~n 50 (59)
T cd00086 11 QLEELEKEFEK-----N-PYPSREEREELAKELG-------LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHh-----C-CCCCHHHHHHHHHHHC-------cCHHHHHHHHHH
Confidence 34566777875 5 7999999999999987 789999998864
No 155
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=46.70 E-value=44 Score=30.98 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.8
Q ss_pred CCCEEEecCCCCCC
Q 018687 116 HIPIILCGDWNGSK 129 (352)
Q Consensus 116 ~~pvil~GDFNs~~ 129 (352)
+.-+|+||+|.+.|
T Consensus 64 P~~fVL~GnF~S~p 77 (291)
T PTZ00235 64 PVGFIFMGDFISLK 77 (291)
T ss_pred CeEEEEecCccCCc
Confidence 44589999999998
No 156
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.64 E-value=27 Score=34.54 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=28.4
Q ss_pred hhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHh
Q 018687 209 ASLAENDAFAFFKADNNGDVITHSAFCEALRQV 241 (352)
Q Consensus 209 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 241 (352)
...++..+|++-|.|+| |-++..||+.+|..+
T Consensus 263 pi~ELshIWeLsD~d~D-GALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRD-GALTLSEFCAAFHLV 294 (737)
T ss_pred chHHHHHHHhhcccCcc-ccccHHHHHhhHhhe
Confidence 34789999999999999 999999999998654
No 157
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=44.47 E-value=1.2e+02 Score=24.25 Aligned_cols=92 Identities=14% Similarity=0.014 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHh-h---hhhhhHHHHHhhhcccCC-CCCcCHHHHHHHHHHhc--cC-CCCCCCC---------
Q 018687 189 PLQASWAEAVFSIIKCQL-Q---KASLAENDAFAFFKADNN-GDVITHSAFCEALRQVN--LA-GLPYGLS--------- 251 (352)
Q Consensus 189 p~~t~f~efl~~~~~~~~-~---~~~~~~~~~F~~~D~d~~-~G~I~~~el~~~l~~lg--~~-~~~~~~~--------- 251 (352)
+.+..|+.++....-+.. . -....+.++|+...-+.. |..|+..++..+|..+= ++ ..|....
T Consensus 15 IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a 94 (127)
T PF09068_consen 15 IRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLA 94 (127)
T ss_dssp -SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HH
T ss_pred HHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHH
Confidence 356677777654433221 1 123556688877765543 37899999999887652 00 0111111
Q ss_pred -HHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 252 -FQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 252 -~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+=-+..++..+|.+++|.|..-.|...+.
T Consensus 95 ~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 95 VDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 11245677899999999999999965553
No 158
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=44.23 E-value=76 Score=22.25 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=28.4
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 262 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 262 (352)
--|+.+-++..+.++| .++|+..++++++..
T Consensus 30 Ppine~mir~M~~QMG-----~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMG-----RKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 4899999999999999 799999999999865
No 159
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.19 E-value=36 Score=32.72 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=44.0
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 276 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~ 276 (352)
...++|-.+-.- + |+||-..-++-|.. .++...-+-++|+.+|.|.||.+|-+||.
T Consensus 445 ~yde~fy~l~p~-~-gk~sg~~ak~~mv~-------sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-N-GKLSGRNAKKEMVK-------SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhccccc-C-ceeccchhHHHHHh-------ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 445667666543 4 88888777777665 35788889999999999999999999995
No 160
>PRK00523 hypothetical protein; Provisional
Probab=43.19 E-value=77 Score=22.76 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=33.6
Q ss_pred HHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 018687 214 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 262 (352)
Q Consensus 214 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 262 (352)
++.|+..=+++ =-|+.+-++..+.++| .+.|+..++++++..
T Consensus 27 rk~~~k~l~~N--Ppine~mir~M~~QMG-----qKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQIREN--PPITENMIRAMYMQMG-----RKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHC--cCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 34454443344 4899999999999999 799999999999876
No 161
>PLN02228 Phosphoinositide phospholipase C
Probab=40.75 E-value=1e+02 Score=31.50 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=48.4
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCC----CCcceeHHHHHHHHhch
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKQRMWNL 282 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d----~dg~I~~~EF~~~l~~~ 282 (352)
.++..+|..+- ++ +.++.++|.+.|+...- . ...+.+.+++++..+... ..|.++.+.|...|...
T Consensus 24 ~ei~~if~~~s--~~-~~~t~~~~~~FL~~~Q~--~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 24 VSIKRLFEAYS--RN-GKMSFDELLRFVSEVQG--E-RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHHhc--CC-CccCHHHHHHHHHHhcC--C-ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 56778887774 24 68999999999988641 1 124567789999887643 24679999999988753
No 162
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=39.01 E-value=27 Score=25.63 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 266 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~ 266 (352)
|+||++|+..+|... .++.++++.++..+...|
T Consensus 20 G~lT~~eI~~~L~~~-------~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 20 GYLTYDEINDALPED-------DLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp SS-BHHHHHHH-S-S----------HHHHHHHHHHHHTT-
T ss_pred CcCCHHHHHHHcCcc-------CCCHHHHHHHHHHHHHCC
Confidence 999999999999753 478899999998876544
No 163
>PRK01844 hypothetical protein; Provisional
Probab=36.52 E-value=1.1e+02 Score=21.94 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 018687 214 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 262 (352)
Q Consensus 214 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 262 (352)
++.|+.+=+++ =-|+.+-++..+.++| .+.|+..++++++..
T Consensus 26 rk~~~k~lk~N--Ppine~mir~Mm~QMG-----qkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYLQKN--PPINEQMLKMMMMQMG-----QKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHC--CCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 34454443343 3899999999999999 799999999999876
No 164
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=36.42 E-value=54 Score=17.52 Aligned_cols=16 Identities=0% Similarity=0.065 Sum_probs=12.0
Q ss_pred cccCCCCCcCHHHHHHH
Q 018687 221 KADNNGDVITHSAFCEA 237 (352)
Q Consensus 221 D~d~~~G~I~~~el~~~ 237 (352)
|.|++ |.|+.-++..+
T Consensus 1 DvN~D-G~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGD-GKVNAIDLALL 16 (21)
T ss_dssp -TTSS-SSSSHHHHHHH
T ss_pred CCCCC-CcCCHHHHHHH
Confidence 67889 99999887544
No 165
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=34.84 E-value=1.6e+02 Score=27.99 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=28.1
Q ss_pred ceEEEEEeeecCCCCCCchhHHHHHH--HHHHHHHHHHHHhcC---CCCCCEEEecCCCCCCC
Q 018687 73 QEILIVNTHLLFPHDSSLSVVRLHQV--YKILQYLELYQTENK---LNHIPIILCGDWNGSKR 130 (352)
Q Consensus 73 ~~~~v~nTHL~~~~~~~~~~~R~~Q~--~~l~~~i~~~~~~~~---~~~~pvil~GDFNs~~~ 130 (352)
..+..+|+|+ +......+++.-. ...-..+.....+.. ....|++.|||.|..+.
T Consensus 167 e~~~l~~~y~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~ 226 (335)
T KOG1294|consen 167 EIFILINTYV---PNIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHE 226 (335)
T ss_pred cceeeccccC---cccccccchhhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchh
Confidence 3577788887 2222333333322 222222322222211 12348999999999864
No 166
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=34.24 E-value=84 Score=21.65 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=22.0
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 262 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 262 (352)
-.+|.+||...+..|+ ...+.+++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~-----~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLD-----EIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhc-----CCCCHHHHHHHHHHH
Confidence 3577777777777777 567777777777664
No 167
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=34.08 E-value=18 Score=31.30 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=39.3
Q ss_pred HHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q 018687 216 AFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQR 278 (352)
Q Consensus 216 ~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~ 278 (352)
-|-.+|...-||++|..||.-+-.-+ -.-+.-+..++.-.|.|+||.|..+|+-..
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~-------ipme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL-------IPMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred eeccccCCCccccccccccccccCCc-------ccHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 35667876544999999986432111 112334678899999999999999999643
No 168
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.96 E-value=1.5e+02 Score=21.22 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=32.9
Q ss_pred HHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 018687 214 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 262 (352)
Q Consensus 214 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 262 (352)
++.|...=+|+ =-|+.+-++..+.++| .+.|+..+.++++..
T Consensus 26 rk~~~k~lk~N--Ppine~~iR~M~~qmG-----qKpSe~kI~Qvm~~i 67 (71)
T COG3763 26 RKQMKKQLKDN--PPINEEMIRMMMAQMG-----QKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHHhhC--CCCCHHHHHHHHHHhC-----CCchHHHHHHHHHHH
Confidence 34444443444 4899999999999999 799999999999875
No 169
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=32.61 E-value=1.8e+02 Score=25.94 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHh---cCCCCCCEEEecCCCCCCChhhhHHH
Q 018687 97 QVYKILQYLELYQTE---NKLNHIPIILCGDWNGSKRGHVYKFL 137 (352)
Q Consensus 97 Q~~~l~~~i~~~~~~---~~~~~~pvil~GDFNs~~~~~~~~~l 137 (352)
+++.|.+.+..+..+ ...-..||-+|||.- ++.|.+|
T Consensus 23 elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIH----GQFyDL~ 62 (306)
T KOG0373|consen 23 ELKRLCEMVKDILMEESNVQPVSTPVTVCGDIH----GQFYDLL 62 (306)
T ss_pred HHHHHHHHHHHHHhhhcCccccCCCeeEeeccc----hhHHHHH
Confidence 444444444433322 123367999999985 4566666
No 170
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=32.18 E-value=2.3e+02 Score=22.18 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=41.1
Q ss_pred HHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 018687 215 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 276 (352)
Q Consensus 215 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~ 276 (352)
.+|-+++.-++ -..+..+++++|...|+ ...++.++.++..+. |+ +.+|.+
T Consensus 5 aAYLL~~lgGn-~~psa~DikkIl~sVG~-----E~d~e~i~~visel~----GK-~i~ElI 55 (112)
T KOG3449|consen 5 AAYLLAVLGGN-ASPSASDIKKILESVGA-----EIDDERINLVLSELK----GK-DIEELI 55 (112)
T ss_pred HHHHHHHhcCC-CCCCHHHHHHHHHHhCc-----ccCHHHHHHHHHHhc----CC-CHHHHH
Confidence 45556666777 78999999999999995 788899999999983 44 677776
No 171
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=31.92 E-value=36 Score=26.72 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=18.2
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHH
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCE 236 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~ 236 (352)
=++..|+..|.|+| |.||..|...
T Consensus 89 C~~~F~~~CD~n~d-~~Is~~EW~~ 112 (113)
T PF10591_consen 89 CARPFFRSCDVNKD-GKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHH-TT-S-SSEEHHHHHH
T ss_pred HHHHHHHHcCCCCC-CCCCHHHHcc
Confidence 35677889999999 9999999764
No 172
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=31.01 E-value=1.4e+02 Score=21.07 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHhh
Q 018687 249 GLSFQETDDLWAQA 262 (352)
Q Consensus 249 ~~~~~e~~~l~~~~ 262 (352)
.++.+|+..+++.-
T Consensus 29 ~vs~~el~a~lrke 42 (68)
T PF07308_consen 29 EVSKAELSAWLRKE 42 (68)
T ss_pred ccCHHHHHHHHCCC
Confidence 45555555555443
No 173
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=30.26 E-value=81 Score=22.75 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 254 ETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 254 e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
||+.+|..+-. +.+.|+.++|.+.|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~ 27 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLRE 27 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHH
Confidence 57888888855 6788999999888753
No 174
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=30.06 E-value=24 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCCcCHHHHHHHHHHh-ccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 225 NGDVITHSAFCEALRQV-NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 225 ~~G~I~~~el~~~l~~l-g~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
| |.|+.+|...+..-+ .. ..++..+.+.++..++.-....+++.+|+..+..
T Consensus 37 D-G~v~~~E~~~i~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 37 D-GEVDPEEIEAIRQLLAER----FGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp T-SS--CHHHHHHHHHHHHC----GCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred C-CCCCHHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5 999999988776665 11 2466777888888777666667888888766643
No 175
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=29.70 E-value=76 Score=22.64 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
-.++...|-.+|.. .++.+.+..+...++.=..++|+-+||++.|..
T Consensus 7 p~~~F~~L~~~l~~--------~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 7 PWMPFPMLFSALSK--------HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred CcccHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35666666667765 567777777777777777899999999987753
No 176
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=29.31 E-value=1.7e+02 Score=24.87 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=42.3
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHH--HHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQ--ETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~--e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
..+.++|..+++.+. +.+|..|+.++++.-..-..+...... |...++..+ .|.||.+..+.- +.+..
T Consensus 96 ~kFe~iF~kya~~~~-d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~i-R~vYD 165 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGP-DALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDI-RGVYD 165 (174)
T ss_pred HHHHHHHHHhCCCCC-CCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHH-hhhcc
Confidence 456789999999888 899999999999862100011122222 333333333 567888877765 44443
No 177
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=28.52 E-value=77 Score=22.80 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=12.3
Q ss_pred CCcCHHHHHHHHHH
Q 018687 227 DVITHSAFCEALRQ 240 (352)
Q Consensus 227 G~I~~~el~~~l~~ 240 (352)
|+++.+||..++..
T Consensus 29 Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 29 GKLRGEEINSLLEA 42 (75)
T ss_pred CcccHHHHHHHHHH
Confidence 99999999988866
No 178
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=28.19 E-value=80 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.8
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 266 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~ 266 (352)
+-++..++.+.|..-| ..++++.+...++.+|.+|
T Consensus 12 ~P~g~~~l~~~L~~~g-----~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 12 KPLGRKQLAEELKLRG-----EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCHHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHCC
Confidence 6899999999998878 5789999999999998776
No 179
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=27.86 E-value=1.7e+02 Score=19.12 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=30.0
Q ss_pred hhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh
Q 018687 210 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ 261 (352)
Q Consensus 210 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~ 261 (352)
...|...|.. + .+++.++...+-..+| ++...|..+|..
T Consensus 12 ~~~L~~~f~~-----~-~~p~~~~~~~la~~l~-------l~~~~V~~WF~n 50 (57)
T PF00046_consen 12 LKVLEEYFQE-----N-PYPSKEEREELAKELG-------LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHH-----S-SSCHHHHHHHHHHHHT-------SSHHHHHHHHHH
T ss_pred HHHHHHHHHH-----h-cccccccccccccccc-------ccccccccCHHH
Confidence 3455666652 5 7999999999999888 788999988863
No 180
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=27.48 E-value=80 Score=25.78 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=41.8
Q ss_pred CCCCCcCHHHHHHHHHH----hccCCCCCCCCHHHHHHHHHhhCCCCCcc-eeHHHHHHH
Q 018687 224 NNGDVITHSAFCEALRQ----VNLAGLPYGLSFQETDDLWAQADVDGNGV-VNYEEFKQR 278 (352)
Q Consensus 224 ~~~G~I~~~el~~~l~~----lg~~~~~~~~~~~e~~~l~~~~D~d~dg~-I~~~EF~~~ 278 (352)
++ -.||.+||.+++.. +.+.|.+-.+..++++.+.+.+..-..+. ++..|-+++
T Consensus 80 Gd-~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GD-EELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CC-EECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 45 68999999999876 23335666788999999999998866664 888887654
No 181
>PLN02952 phosphoinositide phospholipase C
Probab=26.36 E-value=1.7e+02 Score=30.17 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=40.2
Q ss_pred CCCCCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 224 NNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 224 ~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
+. |.++.++|+...+.+... ......||..+|..+-.+ ++.++.++|.+.|..
T Consensus 13 ~~-g~l~f~~f~~f~~~~k~~---~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DS-GSYNYKMFNLFNRKFKIT---EAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVL 65 (599)
T ss_pred cC-CCcCHHHHHHHHHHhccc---cCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 46 899999998777765410 223678999999999644 468999999988864
No 182
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=25.73 E-value=5.3e+02 Score=25.84 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=34.1
Q ss_pred CchhHHHHHHHHHHHHHHHh---hhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHhc
Q 018687 187 RKPLQASWAEAVFSIIKCQL---QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 242 (352)
Q Consensus 187 ~~p~~t~f~efl~~~~~~~~---~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 242 (352)
+.|..++-.++=..++..++ ..+...+.-+|+.-|.++= =.|+.++|+.+|.-++
T Consensus 101 G~PvRaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gL-lLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 101 GHPVRATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGL-LLLDLKDLRAMLQYVS 158 (502)
T ss_pred CceEEeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCC-ccccHHHHHHHHHHHH
Confidence 44444444444444444443 2344667788888887776 6788888888876653
No 183
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=25.71 E-value=1.4e+02 Score=21.30 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHhhhcccCCCCCcCHHHHHHHHHHh
Q 018687 192 ASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQV 241 (352)
Q Consensus 192 t~f~efl~~~~~~~~~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 241 (352)
..|...+..+...+.......+...|+.| .. +.|+.+||-+.|+.+
T Consensus 9 ~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~---k~-~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 9 MPFPMLFSALSKHLPPSKMDLLQKHYEEF---KK-KKISREEFVRKLRQI 54 (70)
T ss_pred ccHHHHHHHHHHHCCHHHHHHHHHHHHHH---HH-CCCCHHHHHHHHHHH
Confidence 34555555555544444445555555544 46 899999999999874
No 184
>PLN02223 phosphoinositide phospholipase C
Probab=24.00 E-value=2.5e+02 Score=28.57 Aligned_cols=67 Identities=6% Similarity=-0.011 Sum_probs=47.6
Q ss_pred hhHHHHHhhhcccCCCCCcCHHHHHHHHHHh---ccCCCCCCCCHHHHHHHHHhhCCCC--------CcceeHHHHHHHH
Q 018687 211 LAENDAFAFFKADNNGDVITHSAFCEALRQV---NLAGLPYGLSFQETDDLWAQADVDG--------NGVVNYEEFKQRM 279 (352)
Q Consensus 211 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l---g~~~~~~~~~~~e~~~l~~~~D~d~--------dg~I~~~EF~~~l 279 (352)
..++.+|..+- ++. |..+.+.|.+.|+-| . |+ ...+.++++.++..+-... .+.++.+.|.+.|
T Consensus 16 ~~v~~~f~~~~-~~~-~~m~~~~l~~fl~~l~~~q--~e-~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 16 DLILNFFGNEF-HGY-DDDMPELLPRFIELLDTEK--DE-DGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred HHHHHHHHHhh-cCC-CCCCHHHHHHHHHHHHHhc--cc-ccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 56788898884 566 899999999999333 2 00 2466788888887653222 3669999999988
Q ss_pred hch
Q 018687 280 WNL 282 (352)
Q Consensus 280 ~~~ 282 (352)
...
T Consensus 91 ~s~ 93 (537)
T PLN02223 91 FST 93 (537)
T ss_pred cCc
Confidence 763
No 185
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=22.75 E-value=1.5e+02 Score=19.00 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=19.1
Q ss_pred cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 018687 229 ITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 262 (352)
Q Consensus 229 I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 262 (352)
+|..|| .+|.... +...+++..+++.+|..+
T Consensus 11 lTP~El-~a~~g~~--~~~~pl~R~~L~~Lm~~~ 41 (43)
T PF09550_consen 11 LTPAEL-RAMLGAD--AGAAPLDRAELDALMRRF 41 (43)
T ss_pred cCHHHH-HHhcCcc--cCCCCCCHHHHHHHHHHC
Confidence 567777 5554332 223567778888887765
No 186
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=22.24 E-value=73 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=22.1
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHHHh
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALRQV 241 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 241 (352)
-+..+...||.+++ |.|+.-+++.+|..+
T Consensus 98 ~ln~Ll~vyD~~rt-G~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRT-GKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT---SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCC-CeeehhHHHHHHHHh
Confidence 35578899999999 999999999998764
No 187
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=22.24 E-value=93 Score=26.47 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEec---CCCCCCChhhhHHHH
Q 018687 97 QVYKILQYLELYQTENKLNHIPIILCG---DWNGSKRGHVYKFLR 138 (352)
Q Consensus 97 Q~~~l~~~i~~~~~~~~~~~~pvil~G---DFNs~~~~~~~~~l~ 138 (352)
|+..+.+.+... +.+||++| ||...|-..+-++|.
T Consensus 91 ~i~~l~~~~~~~-------g~~Vi~~GL~~df~~~~F~~~~~Ll~ 128 (176)
T PF00265_consen 91 QIVQLVEILANK-------GIPVICAGLDTDFRGEPFGGSPRLLP 128 (176)
T ss_dssp THHHHHHHHHHT-------T-EEEEEEESB-TTSSB-TTHHHHHH
T ss_pred HHHHHHHHHHhC-------CCeEEEEeeCCccccCcchhHHHHHh
Confidence 444555555432 78999998 999999998888884
No 188
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=21.59 E-value=1.9e+02 Score=26.45 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCCCcCHHHHH---HHHHHhccCCCCCCCCHHH---HHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 225 NGDVITHSAFC---EALRQVNLAGLPYGLSFQE---TDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 225 ~~G~I~~~el~---~~l~~lg~~~~~~~~~~~e---~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
| |.|+..|+. .++..++ +++++ +..+|+..- ....++.+|+..+.
T Consensus 69 D-G~Vse~Ei~~~~~l~~~~~-------l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~ 119 (267)
T PRK09430 69 K-GRVTEADIRIASQLMDRMN-------LHGEARRAAQQAFREGK---EPDFPLREKLRQFR 119 (267)
T ss_pred C-CCcCHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHH
Confidence 5 999999987 2233334 56666 556665543 33477888876654
No 189
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=21.50 E-value=1.1e+02 Score=28.83 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=24.4
Q ss_pred hHHHHHhhhcccCCCCCcCHHHHHHHHHH
Q 018687 212 AENDAFAFFKADNNGDVITHSAFCEALRQ 240 (352)
Q Consensus 212 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 240 (352)
=.++.|+..|.|+| -.||.+|++..|..
T Consensus 371 C~rk~~~yCDlNkD-KkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 371 CSRKFFKYCDLNKD-KKISLDEWRGCLGV 398 (421)
T ss_pred HhhhcchhcccCCC-ceecHHHHhhhhcc
Confidence 35688999999999 99999999988854
No 190
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=20.68 E-value=2.7e+02 Score=20.77 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCcCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHhc
Q 018687 227 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 281 (352)
Q Consensus 227 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~~ 281 (352)
|.++..|...+-+-+.- ..+++.+...+...+..-.+...++.+|.+.+..
T Consensus 14 G~v~~~E~~~i~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 14 GRVSEAEIQAARALMDQ----MGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred CCcCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 89999886554433320 1233333333433332222222677888766643
No 191
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=20.42 E-value=1.2e+02 Score=31.29 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q 018687 251 SFQETDDLWAQADVDGNGVVNYEEFKQRMW 280 (352)
Q Consensus 251 ~~~e~~~l~~~~D~d~dg~I~~~EF~~~l~ 280 (352)
+..-++.+|...|.+++|.|+|.+|+..|.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~ 582 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLS 582 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHH
Confidence 334468889999999999999999997664
No 192
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=20.08 E-value=1.8e+02 Score=24.86 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=25.3
Q ss_pred EEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEecCCCCCC
Q 018687 75 ILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSK 129 (352)
Q Consensus 75 ~~v~nTHL~~~~~~~~~~~R~~Q~~~l~~~i~~~~~~~~~~~~pvil~GDFNs~~ 129 (352)
+.+.-+||...........|.......++.+.....+. ..--||++||+=...
T Consensus 3 ~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~i~~~GD~~~~~ 55 (223)
T cd00840 3 LHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE--KVDFVLIAGDLFDSN 55 (223)
T ss_pred EEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc--CCCEEEECCcccCCC
Confidence 56777888642211111123333333344433333221 122489999987764
Done!