BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018689
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 241
+C VCK+ + L E RQ+PC H++H CI+PWLE H+SCPVCR L
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 168 GTPPASKSAIEALPSIKINEAMMSSDSSQCA-VCKDSFELNEEARQMPCKHIYHPDCIMP 226
PPASK +I+ALP I + E + C +C + + A ++PC H +H C+
Sbjct: 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSI 72
Query: 227 WLELHNSCPVCRYELP 242
WL+ +CPVCR P
Sbjct: 73 WLQKSGTCPVCRCMFP 88
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 180 LPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRY 239
LPS + N S+ + C VC FE + R +PC H +H C+ WL+ + +CP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
Query: 240 E 240
+
Sbjct: 69 D 69
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 193 DSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLELHNSCPVCR 238
D +CAVC E EEAR +P C H +H +C+ WL H++CP+CR
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDP 246
+C +C E E+ R++PC H++H C+ WL + CP+CR ++ P
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 197 CAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVC 237
CAVC + F+ +E PCKH +H C++ WLE+ CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 192 SDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 241
+D +C +C D +PC H + CI W + H +CP+CR ++
Sbjct: 13 TDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243
QC +C + F EA + C H + CI W++ CP+CR ++ +
Sbjct: 55 QCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243
QC +C + F EA + C H + CI W++ CP+CR ++ +
Sbjct: 55 QCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243
QC +C + F EA + C H + CI W++ CP+CR ++ +
Sbjct: 66 QCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 20 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 74
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 330 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 384
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 330 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 384
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 22 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 76
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 328 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 328 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 23 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 77
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTDDP 246
M S C +C ++ +++ + PC H+ C+ W E CP CR E+ +P
Sbjct: 334 MGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 388
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 192 SDSSQCAVCKDSF-ELNEEAR---QMPCKHIYHPDCIMPWLELHNSCPVCRYEL 241
S + C +C D + E+ + R C H++ C+ L+ N+CP CR ++
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 190 MSSDSSQCAVCKDSF-ELNEEARQM---PCKHIYHPDCIMPWLELHNSCPVCRYEL 241
M S + C +C D + E+ + R + C H++ C+ L+ N+CP CR ++
Sbjct: 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 190 MSSDSSQCAVCKDSF-ELNEEARQM---PCKHIYHPDCIMPWLELHNSCPVCRYEL 241
+ S + C +C D + E+ + R + C H++ C+ L+ N+CP CR ++
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 192 SDSSQCAVCKDSF-ELNEEAR---QMPCKHIYHPDCIMPWLELHNSCPVCRYEL 241
S + C +C D + E+ + R C H++ C+ L+ N+CP CR ++
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 191 SSDSSQCAVCKDSFELNEE-ARQMPCKHIYHPDCIMPWLELHNSCPVC 237
SS SS C +C + + A +PC H+ H C L+ CP+C
Sbjct: 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 197 CAVCKDSF-ELNEEAR---QMPCKHIYHPDCIMPWLELHNSCPVCRYEL 241
C +C D + E+ + R C H++ C+ L+ N+CP CR ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244
+CA+C + +PCKH++ C+ L C +CR E+P D
Sbjct: 17 ECAIC---LQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 215 CKHIYHPDCIMPWLELHNSCPVCRYE 240
C H +H C+ W++ +N CP+C+ +
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 215 CKHIYHPDCIMPWLELHNSCPV 236
C H +H CI WL+ CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 215 CKHIYHPDCIMPWLELHNSCPV 236
C H +H CI WL+ CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 215 CKHIYHPDCIMPWLELHNSCPV 236
C H +H CI WL+ CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 215 CKHIYHPDCIMPWLELHNSCPV 236
C H +H CI WL+ CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 215 CKHIYHPDCIMPWLELHNSCPV 236
C H +H CI WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 215 CKHIYHPDCIMPWLELHNSCPV 236
C H +H CI WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 215 CKHIYHPDCIMPWLELHNSCPV 236
C H +H CI WL+ CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 197 CAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDP 246
C +C F + + C H + CI+ +LE CP+C ++ P
Sbjct: 14 CVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 61
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 190 MSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCR 238
M++ + +C +C + + + + +PC H + CI W+ + +CP+C+
Sbjct: 1 MATVAERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 197 CAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDP 246
C +C F + + C H + CI+ +LE CP+C ++ P
Sbjct: 18 CVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 197 CAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDP 246
C +C F + + C H + CI+ +LE CP+C ++ P
Sbjct: 18 CVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,333,230
Number of Sequences: 62578
Number of extensions: 286776
Number of successful extensions: 553
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 42
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)