Query 018689
Match_columns 352
No_of_seqs 480 out of 1860
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.7E-17 5.9E-22 131.6 6.0 79 165-243 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 2.8E-17 9.4E-22 125.4 3.9 72 173-244 2-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 9E-15 3.1E-19 104.4 4.9 50 193-242 4-54 (55)
4 2ect_A Ring finger protein 126 99.5 2.4E-14 8.1E-19 109.6 5.9 52 193-244 14-65 (78)
5 2kiz_A E3 ubiquitin-protein li 99.5 2.1E-14 7.3E-19 107.3 4.8 52 193-244 13-64 (69)
6 2ep4_A Ring finger protein 24; 99.5 2.7E-14 9.3E-19 108.1 4.4 50 194-243 15-64 (74)
7 2ecm_A Ring finger and CHY zin 99.4 9.6E-14 3.3E-18 98.9 4.9 50 193-242 4-54 (55)
8 3dpl_R Ring-box protein 1; ubi 99.4 1.9E-13 6.5E-18 111.6 4.7 50 193-242 36-100 (106)
9 2ecl_A Ring-box protein 2; RNF 99.4 1.2E-13 4.3E-18 107.0 2.7 50 194-243 15-76 (81)
10 3ng2_A RNF4, snurf, ring finge 99.4 1.9E-13 6.6E-18 102.2 3.3 52 193-244 9-64 (71)
11 2ea6_A Ring finger protein 4; 99.4 3E-13 1E-17 100.4 3.5 51 193-243 14-68 (69)
12 1v87_A Deltex protein 2; ring- 99.3 3.4E-13 1.2E-17 110.4 3.5 50 194-243 25-94 (114)
13 2xeu_A Ring finger protein 4; 99.3 3.9E-13 1.3E-17 98.3 3.0 51 194-244 3-57 (64)
14 2d8t_A Dactylidin, ring finger 99.3 7.7E-13 2.6E-17 99.5 3.4 47 193-242 14-60 (71)
15 1chc_A Equine herpes virus-1 r 99.3 1.6E-12 5.3E-17 96.6 4.9 48 194-243 5-52 (68)
16 2ecn_A Ring finger protein 141 99.3 3.3E-13 1.1E-17 101.0 1.0 49 193-245 14-62 (70)
17 2djb_A Polycomb group ring fin 99.3 1.8E-12 6.1E-17 97.8 4.2 49 194-245 15-64 (72)
18 2d8s_A Cellular modulator of i 99.3 2.2E-12 7.6E-17 100.1 4.3 51 193-244 14-71 (80)
19 4a0k_B E3 ubiquitin-protein li 99.3 7.4E-13 2.5E-17 109.9 1.1 50 193-242 47-111 (117)
20 2ct2_A Tripartite motif protei 99.2 4E-12 1.4E-16 98.8 4.4 52 193-244 14-69 (88)
21 2yur_A Retinoblastoma-binding 99.2 4.6E-12 1.6E-16 96.1 4.5 48 194-244 15-65 (74)
22 2csy_A Zinc finger protein 183 99.2 4.7E-12 1.6E-16 97.5 4.1 46 194-242 15-60 (81)
23 2ysl_A Tripartite motif-contai 99.2 5.3E-12 1.8E-16 94.9 4.2 49 193-244 19-70 (73)
24 4ayc_A E3 ubiquitin-protein li 99.2 5.3E-12 1.8E-16 107.2 3.4 48 194-244 53-100 (138)
25 2ecy_A TNF receptor-associated 99.2 5.1E-12 1.8E-16 93.5 2.5 48 194-244 15-63 (66)
26 1t1h_A Gspef-atpub14, armadill 99.2 1E-11 3.6E-16 94.7 4.0 49 193-244 7-56 (78)
27 2ct0_A Non-SMC element 1 homol 99.2 1.2E-11 4.1E-16 94.5 3.1 50 194-245 15-66 (74)
28 2ecw_A Tripartite motif-contai 99.1 2E-11 7E-16 93.8 3.7 48 194-244 19-72 (85)
29 2ecv_A Tripartite motif-contai 99.1 2.2E-11 7.5E-16 93.6 3.9 47 194-243 19-71 (85)
30 3lrq_A E3 ubiquitin-protein li 99.1 1.4E-11 4.7E-16 99.0 2.7 48 194-244 22-71 (100)
31 4ap4_A E3 ubiquitin ligase RNF 99.1 2E-11 6.8E-16 101.4 3.1 53 193-245 6-62 (133)
32 2egp_A Tripartite motif-contai 99.1 8.2E-12 2.8E-16 95.2 0.6 48 193-243 11-65 (79)
33 2ysj_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 88.1 3.6 42 193-237 19-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.1 4.4E-11 1.5E-15 95.5 3.4 47 194-243 22-69 (99)
35 3ztg_A E3 ubiquitin-protein li 99.1 6.9E-11 2.3E-15 92.9 4.1 47 193-242 12-61 (92)
36 2y1n_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 118.4 2.9 47 194-243 332-379 (389)
37 2ckl_A Polycomb group ring fin 99.1 4.6E-11 1.6E-15 97.0 3.1 48 194-244 15-63 (108)
38 4ap4_A E3 ubiquitin ligase RNF 99.1 4.6E-11 1.6E-15 99.2 3.2 53 192-244 70-126 (133)
39 3fl2_A E3 ubiquitin-protein li 99.1 6.4E-11 2.2E-15 98.5 3.6 47 194-243 52-99 (124)
40 1g25_A CDK-activating kinase a 99.1 7.4E-11 2.5E-15 86.9 3.4 51 194-244 3-56 (65)
41 2ecj_A Tripartite motif-contai 99.0 5.8E-11 2E-15 85.1 2.2 42 193-237 14-58 (58)
42 1jm7_A BRCA1, breast cancer ty 99.0 1.1E-10 3.7E-15 94.8 3.3 48 194-244 21-71 (112)
43 3hct_A TNF receptor-associated 99.0 1.1E-10 3.8E-15 96.3 2.7 49 193-244 17-66 (118)
44 2ckl_B Ubiquitin ligase protei 99.0 1.5E-10 5.2E-15 100.8 3.1 47 194-243 54-102 (165)
45 1z6u_A NP95-like ring finger p 99.0 2.1E-10 7.3E-15 98.9 3.7 48 194-244 78-126 (150)
46 3l11_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 95.7 1.5 46 194-242 15-61 (115)
47 2kr4_A Ubiquitin conjugation f 99.0 2.2E-10 7.5E-15 89.5 3.0 49 193-244 13-61 (85)
48 2kre_A Ubiquitin conjugation f 98.9 3.3E-10 1.1E-14 91.3 3.7 50 193-245 28-77 (100)
49 1wgm_A Ubiquitin conjugation f 98.9 4.1E-10 1.4E-14 90.4 3.9 49 194-245 22-71 (98)
50 1bor_A Transcription factor PM 98.9 3E-10 1E-14 81.7 2.5 45 193-243 5-49 (56)
51 1rmd_A RAG1; V(D)J recombinati 98.9 3.4E-10 1.2E-14 92.9 2.7 48 194-244 23-71 (116)
52 2vje_A E3 ubiquitin-protein li 98.9 6.4E-10 2.2E-14 82.2 2.9 47 193-242 7-56 (64)
53 1jm7_B BARD1, BRCA1-associated 98.9 9.3E-10 3.2E-14 90.6 3.4 46 194-244 22-68 (117)
54 3knv_A TNF receptor-associated 98.8 6.3E-10 2.2E-14 95.0 1.3 48 193-243 30-78 (141)
55 1e4u_A Transcriptional repress 98.8 1.1E-09 3.8E-14 84.3 2.5 52 193-245 10-64 (78)
56 2vje_B MDM4 protein; proto-onc 98.8 1.8E-09 6.1E-14 79.5 2.8 46 194-242 7-55 (63)
57 4ic3_A E3 ubiquitin-protein li 98.7 2.6E-09 8.8E-14 81.1 1.6 43 194-243 24-67 (74)
58 2c2l_A CHIP, carboxy terminus 98.7 5.4E-09 1.9E-13 97.1 3.9 49 193-244 207-256 (281)
59 2yu4_A E3 SUMO-protein ligase 98.7 3.1E-09 1.1E-13 84.4 1.7 48 193-243 6-63 (94)
60 3hcs_A TNF receptor-associated 98.7 5.1E-09 1.7E-13 91.5 2.6 49 193-244 17-66 (170)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 7.5E-09 2.6E-13 99.7 2.4 50 193-242 307-372 (381)
62 2ecg_A Baculoviral IAP repeat- 98.6 1.1E-08 3.8E-13 77.6 1.6 44 194-244 25-69 (75)
63 2ea5_A Cell growth regulator w 98.6 3.8E-08 1.3E-12 73.6 4.0 44 193-243 14-58 (68)
64 2f42_A STIP1 homology and U-bo 98.6 1.9E-08 6.4E-13 89.2 2.5 48 194-244 106-154 (179)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.5 3.4E-08 1.2E-12 72.2 2.5 48 193-243 5-59 (60)
66 2bay_A PRE-mRNA splicing facto 98.4 5E-08 1.7E-12 71.5 1.7 47 195-244 4-51 (61)
67 1wim_A KIAA0161 protein; ring 98.4 4.4E-08 1.5E-12 77.3 1.5 47 194-240 5-61 (94)
68 2yho_A E3 ubiquitin-protein li 98.4 4.5E-08 1.5E-12 75.3 1.3 43 194-243 18-61 (79)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.8E-07 6.2E-12 91.0 3.7 44 193-243 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 2.4E-07 8.2E-12 86.4 1.4 49 194-245 181-234 (267)
71 3vk6_A E3 ubiquitin-protein li 98.0 3E-06 1E-10 67.6 2.7 46 196-243 3-49 (101)
72 3nw0_A Non-structural maintena 97.8 4.8E-06 1.6E-10 76.9 2.4 50 194-245 180-231 (238)
73 2ko5_A Ring finger protein Z; 95.5 0.0049 1.7E-07 48.4 1.9 48 194-246 28-76 (99)
74 3h0g_L DNA-directed RNA polyme 94.5 0.023 7.9E-07 41.5 3.0 48 8-57 6-53 (63)
75 2lri_C Autoimmune regulator; Z 93.7 0.042 1.4E-06 40.4 3.1 44 194-241 12-60 (66)
76 2jun_A Midline-1; B-BOX, TRIM, 93.1 0.039 1.3E-06 43.2 2.2 34 194-227 3-36 (101)
77 2kdx_A HYPA, hydrogenase/ureas 91.7 0.11 3.8E-06 42.3 3.2 35 20-57 70-105 (119)
78 1we9_A PHD finger family prote 90.7 0.097 3.3E-06 37.7 1.8 48 193-240 5-58 (64)
79 1wil_A KIAA1045 protein; ring 90.7 0.13 4.3E-06 39.6 2.4 33 194-227 15-47 (89)
80 1fp0_A KAP-1 corepressor; PHD 89.6 0.27 9.1E-06 38.2 3.5 47 193-242 24-74 (88)
81 1wfp_A Zinc finger (AN1-like) 88.2 0.43 1.5E-05 35.8 3.6 32 18-55 20-51 (74)
82 3lqh_A Histone-lysine N-methyl 86.4 0.41 1.4E-05 42.0 3.2 49 195-243 3-66 (183)
83 1mm2_A MI2-beta; PHD, zinc fin 85.8 0.54 1.9E-05 33.6 3.0 46 194-242 9-58 (61)
84 1wg2_A Zinc finger (AN1-like) 85.7 0.44 1.5E-05 34.8 2.4 32 18-55 10-41 (64)
85 2yql_A PHD finger protein 21A; 85.7 0.24 8.3E-06 34.8 1.1 44 193-239 8-55 (56)
86 2ct7_A Ring finger protein 31; 85.1 0.56 1.9E-05 35.8 3.0 39 16-55 18-56 (86)
87 3o36_A Transcription intermedi 84.9 0.47 1.6E-05 41.2 2.8 44 194-241 4-52 (184)
88 1f62_A Transcription factor WS 84.0 0.48 1.6E-05 32.4 1.9 44 196-239 2-49 (51)
89 2l5u_A Chromodomain-helicase-D 83.6 0.52 1.8E-05 33.7 2.0 43 194-240 11-58 (61)
90 4ayb_P DNA-directed RNA polyme 83.6 1 3.5E-05 30.7 3.3 38 22-59 2-40 (48)
91 3m62_A Ubiquitin conjugation f 81.9 0.61 2.1E-05 50.6 2.6 50 193-245 890-940 (968)
92 3u5n_A E3 ubiquitin-protein li 81.3 0.61 2.1E-05 41.4 2.0 44 194-241 7-55 (207)
93 2ysm_A Myeloid/lymphoid or mix 80.8 0.95 3.2E-05 36.0 2.8 46 193-238 6-55 (111)
94 2lv9_A Histone-lysine N-methyl 80.0 1.2 4E-05 35.0 3.1 47 194-241 28-77 (98)
95 3v43_A Histone acetyltransfera 79.5 1 3.5E-05 36.0 2.7 45 195-239 62-111 (112)
96 2xb1_A Pygopus homolog 2, B-ce 79.4 0.4 1.4E-05 38.2 0.1 48 194-241 3-62 (105)
97 2k16_A Transcription initiatio 79.3 0.35 1.2E-05 35.9 -0.2 48 194-242 18-70 (75)
98 2yt5_A Metal-response element- 78.9 0.63 2.1E-05 33.5 1.1 50 193-242 5-63 (66)
99 2kgg_A Histone demethylase jar 78.5 1.4 4.9E-05 30.2 2.8 43 196-238 4-52 (52)
100 1wfh_A Zinc finger (AN1-like) 78.4 1.3 4.3E-05 32.3 2.5 30 20-55 12-41 (64)
101 3a43_A HYPD, hydrogenase nicke 77.1 1.1 3.8E-05 37.4 2.3 36 20-55 67-120 (139)
102 1twf_L ABC10-alpha, DNA-direct 76.9 1.9 6.6E-05 31.9 3.2 36 20-57 25-60 (70)
103 1xwh_A Autoimmune regulator; P 76.8 0.8 2.7E-05 33.2 1.1 44 193-240 7-55 (66)
104 2e6r_A Jumonji/ARID domain-con 76.7 0.71 2.4E-05 35.9 0.9 45 194-239 16-65 (92)
105 2lcq_A Putative toxin VAPC6; P 76.6 1.2 4.3E-05 37.8 2.5 33 20-56 129-161 (165)
106 4fo9_A E3 SUMO-protein ligase 75.7 0.92 3.2E-05 43.9 1.5 50 194-246 215-269 (360)
107 1weu_A Inhibitor of growth fam 75.6 2.7 9.2E-05 32.6 3.9 44 194-241 36-86 (91)
108 2ro1_A Transcription intermedi 75.1 1.2 4.2E-05 39.0 2.1 44 194-240 2-49 (189)
109 3shb_A E3 ubiquitin-protein li 73.7 1.1 3.9E-05 33.6 1.3 43 196-239 28-76 (77)
110 1wep_A PHF8; structural genomi 72.9 1.8 6.3E-05 32.3 2.3 47 194-241 12-64 (79)
111 2puy_A PHD finger protein 21A; 71.6 1.2 4.2E-05 31.4 1.0 44 194-240 5-52 (60)
112 1wfl_A Zinc finger protein 216 71.5 3.5 0.00012 30.8 3.5 30 20-55 22-51 (74)
113 3i2d_A E3 SUMO-protein ligase 70.2 1.3 4.5E-05 43.0 1.1 50 194-246 249-303 (371)
114 1wev_A Riken cDNA 1110020M19; 68.5 0.7 2.4E-05 35.6 -1.0 49 194-242 16-74 (88)
115 1wen_A Inhibitor of growth fam 68.5 4.7 0.00016 29.6 3.6 43 194-241 16-66 (71)
116 2e6s_A E3 ubiquitin-protein li 67.9 2.3 8E-05 31.8 1.9 44 195-239 27-76 (77)
117 2vpb_A Hpygo1, pygopus homolog 67.6 2.4 8.3E-05 30.7 1.9 33 194-226 8-42 (65)
118 1iml_A CRIP, cysteine rich int 67.2 3.2 0.00011 30.1 2.5 38 196-243 2-39 (76)
119 2cu8_A Cysteine-rich protein 2 66.7 4 0.00014 29.5 3.0 40 194-243 9-48 (76)
120 1wee_A PHD finger family prote 66.2 1.4 4.9E-05 32.3 0.4 46 194-240 16-66 (72)
121 1y02_A CARP2, FYVE-ring finger 65.5 1.5 5E-05 35.9 0.3 46 194-239 19-65 (120)
122 1wff_A Riken cDNA 2810002D23 p 65.0 5.7 0.00019 30.4 3.5 29 21-54 23-51 (85)
123 2dj7_A Actin-binding LIM prote 64.0 4.8 0.00017 29.7 3.0 39 194-242 15-53 (80)
124 2cot_A Zinc finger protein 435 63.3 7.5 0.00026 27.4 3.9 38 17-54 12-58 (77)
125 2co8_A NEDD9 interacting prote 62.1 5.6 0.00019 29.4 3.1 41 194-244 15-55 (82)
126 3o70_A PHD finger protein 13; 61.5 2.4 8.1E-05 31.0 0.8 44 194-239 19-66 (68)
127 3asl_A E3 ubiquitin-protein li 61.4 3.2 0.00011 30.4 1.6 44 196-240 20-69 (70)
128 1wem_A Death associated transc 61.2 1.7 6E-05 32.1 0.0 46 194-240 16-70 (76)
129 1x4w_A Hypothetical protein FL 60.7 4.1 0.00014 29.8 1.9 32 20-54 12-43 (67)
130 3zyq_A Hepatocyte growth facto 60.5 17 0.00057 32.5 6.4 49 193-241 163-220 (226)
131 3ask_A E3 ubiquitin-protein li 60.0 3.7 0.00013 37.1 2.0 44 195-239 175-224 (226)
132 1wew_A DNA-binding family prot 59.9 2 6.9E-05 32.1 0.2 47 194-241 16-73 (78)
133 1z2q_A LM5-1; membrane protein 59.4 7.2 0.00025 29.4 3.3 35 193-227 20-55 (84)
134 3t7l_A Zinc finger FYVE domain 58.6 6.6 0.00023 30.1 3.0 47 194-240 20-73 (90)
135 2ri7_A Nucleosome-remodeling f 58.5 1.8 6E-05 37.1 -0.4 45 194-239 8-58 (174)
136 2lbm_A Transcriptional regulat 58.3 5.5 0.00019 33.4 2.6 43 194-240 63-117 (142)
137 1wfk_A Zinc finger, FYVE domai 58.1 7.6 0.00026 29.7 3.2 47 194-240 9-63 (88)
138 1joc_A EEA1, early endosomal a 57.9 6.5 0.00022 32.0 3.0 34 194-227 69-103 (125)
139 2yw8_A RUN and FYVE domain-con 57.7 8 0.00027 29.0 3.2 35 194-228 19-54 (82)
140 1x4u_A Zinc finger, FYVE domai 57.6 8.6 0.0003 28.9 3.4 34 194-227 14-48 (84)
141 1x61_A Thyroid receptor intera 56.8 13 0.00045 26.2 4.3 40 194-242 5-44 (72)
142 2ysm_A Myeloid/lymphoid or mix 56.2 2.2 7.4E-05 33.9 -0.2 44 196-240 56-104 (111)
143 1zfo_A LAsp-1; LIM domain, zin 56.2 3.9 0.00013 25.0 1.0 28 195-224 4-31 (31)
144 1x4l_A Skeletal muscle LIM-pro 56.1 13 0.00044 26.4 4.0 40 194-242 5-46 (72)
145 1vfy_A Phosphatidylinositol-3- 55.7 8.5 0.00029 28.2 3.0 33 195-227 12-45 (73)
146 1dvp_A HRS, hepatocyte growth 55.5 7.4 0.00025 34.5 3.2 36 193-228 160-196 (220)
147 1x63_A Skeletal muscle LIM-pro 55.0 12 0.0004 27.3 3.8 42 194-244 15-56 (82)
148 2con_A RUH-035 protein, NIN on 54.4 9.1 0.00031 28.9 3.0 33 22-58 14-46 (79)
149 4gne_A Histone-lysine N-methyl 54.0 11 0.00037 30.0 3.6 44 193-242 14-64 (107)
150 1x4k_A Skeletal muscle LIM-pro 53.5 12 0.0004 26.5 3.5 41 195-244 6-46 (72)
151 1wyh_A SLIM 2, skeletal muscle 53.0 9.3 0.00032 27.0 2.8 42 194-244 5-46 (72)
152 2kwj_A Zinc finger protein DPF 52.1 10 0.00036 30.1 3.3 34 195-228 2-42 (114)
153 1z60_A TFIIH basal transcripti 51.4 4.2 0.00014 29.0 0.7 43 195-237 16-58 (59)
154 2dar_A PDZ and LIM domain prot 51.1 11 0.00038 28.2 3.1 39 194-243 25-63 (90)
155 2cs3_A Protein C14ORF4, MY039 50.8 13 0.00043 28.3 3.2 36 194-230 15-52 (93)
156 1a7i_A QCRP2 (LIM1); LIM domai 50.7 7.7 0.00026 28.4 2.1 41 194-244 7-47 (81)
157 3v43_A Histone acetyltransfera 49.2 12 0.00042 29.6 3.2 33 194-226 5-43 (112)
158 1x64_A Alpha-actinin-2 associa 49.2 16 0.00053 27.2 3.7 40 194-244 25-64 (89)
159 2gmg_A Hypothetical protein PF 49.1 10 0.00035 30.2 2.6 32 22-55 66-97 (105)
160 2ku3_A Bromodomain-containing 47.9 4.8 0.00016 29.6 0.5 47 193-239 15-65 (71)
161 1wd2_A Ariadne-1 protein homol 47.3 9.7 0.00033 27.0 2.1 37 194-230 6-47 (60)
162 1x62_A C-terminal LIM domain p 47.3 12 0.0004 27.2 2.7 38 194-242 15-52 (79)
163 1zbd_B Rabphilin-3A; G protein 47.1 12 0.00042 30.8 3.0 47 193-239 54-106 (134)
164 2d8x_A Protein pinch; LIM doma 46.9 15 0.0005 25.9 3.1 40 194-244 5-44 (70)
165 2ct7_A Ring finger protein 31; 46.9 4.1 0.00014 30.9 0.0 36 197-232 28-66 (86)
166 1x68_A FHL5 protein; four-and- 46.7 12 0.00041 26.9 2.6 40 195-242 6-46 (76)
167 1g47_A Pinch protein; LIM doma 46.4 15 0.00051 26.3 3.1 41 194-243 11-51 (77)
168 3f6q_B LIM and senescent cell 46.3 15 0.0005 25.7 3.0 41 194-243 11-51 (72)
169 2l3k_A Rhombotin-2, linker, LI 46.2 11 0.00036 30.1 2.4 39 195-242 9-47 (123)
170 2d8z_A Four and A half LIM dom 45.6 19 0.00064 25.3 3.5 39 194-243 5-43 (70)
171 3mpx_A FYVE, rhogef and PH dom 45.2 4.5 0.00015 39.2 0.0 48 194-241 375-430 (434)
172 2ee8_A Protein ODD-skipped-rel 44.6 20 0.00069 26.5 3.7 37 18-54 12-57 (106)
173 2l43_A N-teminal domain from h 44.2 3.5 0.00012 31.6 -0.7 50 193-242 24-77 (88)
174 2a20_A Regulating synaptic mem 44.1 3.5 0.00012 29.4 -0.7 48 192-239 7-59 (62)
175 2eps_A POZ-, at HOOK-, and zin 43.4 24 0.00082 23.0 3.6 34 20-53 9-52 (54)
176 2d8y_A Eplin protein; LIM doma 42.1 17 0.00059 27.1 3.0 40 194-243 15-54 (91)
177 2kwj_A Zinc finger protein DPF 41.7 5.9 0.0002 31.6 0.2 46 195-240 59-108 (114)
178 3c6w_A P28ING5, inhibitor of g 41.3 5.8 0.0002 28.0 0.1 41 194-239 9-57 (59)
179 2vnf_A ING 4, P29ING4, inhibit 40.6 5.7 0.0002 28.1 -0.0 41 194-239 10-58 (60)
180 2d8v_A Zinc finger FYVE domain 40.6 15 0.00051 26.7 2.2 30 193-226 7-37 (67)
181 2b9d_A E7 protein; zinc finger 40.2 5.5 0.00019 27.7 -0.2 26 25-50 10-49 (52)
182 2jmo_A Parkin; IBR, E3 ligase, 40.2 6.4 0.00022 29.4 0.2 14 214-227 55-68 (80)
183 1weo_A Cellulose synthase, cat 40.0 23 0.00079 27.3 3.3 49 194-242 16-69 (93)
184 2cur_A Skeletal muscle LIM-pro 39.7 24 0.00081 24.6 3.2 38 194-242 5-42 (69)
185 1v6g_A Actin binding LIM prote 39.6 21 0.0007 25.9 3.0 39 195-244 16-54 (81)
186 1nyp_A Pinch protein; LIM doma 38.7 19 0.00064 24.9 2.5 39 194-243 5-43 (66)
187 3ql9_A Transcriptional regulat 38.3 18 0.00063 29.7 2.7 42 194-239 57-110 (129)
188 2l4z_A DNA endonuclease RBBP8, 38.1 15 0.00052 29.4 2.2 39 194-242 61-99 (123)
189 2cuq_A Four and A half LIM dom 36.7 29 0.001 24.9 3.4 39 194-243 15-53 (80)
190 2egq_A FHL1 protein; LIM domai 36.6 29 0.00099 24.7 3.3 41 194-243 15-58 (77)
191 2lce_A B-cell lymphoma 6 prote 35.5 15 0.00052 25.5 1.6 37 18-54 12-57 (74)
192 2cup_A Skeletal muscle LIM-pro 35.3 35 0.0012 25.6 3.8 38 195-241 6-43 (101)
193 2gmg_A Hypothetical protein PF 35.2 9.7 0.00033 30.3 0.5 28 210-242 68-95 (105)
194 1x6a_A LIMK-2, LIM domain kina 34.7 23 0.00078 25.6 2.5 38 195-243 16-53 (81)
195 2cor_A Pinch protein; LIM doma 34.7 26 0.0009 25.4 2.9 40 194-244 15-54 (79)
196 3o7a_A PHD finger protein 13 v 34.4 9.6 0.00033 25.9 0.3 40 199-239 8-51 (52)
197 1wig_A KIAA1808 protein; LIM d 33.8 26 0.00089 25.0 2.6 37 195-242 6-42 (73)
198 1x6e_A Zinc finger protein 24; 33.0 23 0.00078 24.4 2.2 35 20-54 11-54 (72)
199 2o35_A Hypothetical protein DU 32.7 9.3 0.00032 30.1 0.0 12 219-230 43-54 (105)
200 2dlo_A Thyroid receptor-intera 32.6 28 0.00096 25.2 2.7 38 194-242 15-52 (81)
201 3fyb_A Protein of unknown func 32.5 9.4 0.00032 30.0 0.0 11 219-229 42-52 (104)
202 2jne_A Hypothetical protein YF 32.5 8.4 0.00029 30.2 -0.3 40 195-242 33-72 (101)
203 1vd4_A Transcription initiatio 32.2 17 0.00058 24.7 1.4 38 21-58 12-55 (62)
204 2ewl_A Protein E7; HPV, oncopr 32.0 5.2 0.00018 28.2 -1.4 30 20-49 6-53 (56)
205 2rsd_A E3 SUMO-protein ligase 31.0 8.8 0.0003 27.7 -0.4 43 195-239 11-64 (68)
206 2ehe_A Four and A half LIM dom 30.9 30 0.001 25.0 2.7 40 195-243 16-55 (82)
207 1x3h_A Leupaxin; paxillin fami 30.7 33 0.0011 24.6 2.8 38 195-243 16-53 (80)
208 2jmi_A Protein YNG1, ING1 homo 30.5 20 0.00068 27.6 1.6 43 193-238 25-74 (90)
209 1m3v_A FLIN4, fusion of the LI 29.9 30 0.001 27.3 2.7 41 191-241 2-42 (122)
210 1pft_A TFIIB, PFTFIIBN; N-term 29.8 18 0.00063 24.1 1.1 34 22-56 4-38 (50)
211 2zet_C Melanophilin; complex, 29.6 25 0.00086 29.6 2.2 46 194-240 68-117 (153)
212 3c5k_A HD6, histone deacetylas 29.6 17 0.0006 28.8 1.1 15 20-34 71-85 (109)
213 2jny_A Uncharacterized BCR; st 29.5 17 0.00058 26.4 1.0 20 224-243 3-22 (67)
214 2pk7_A Uncharacterized protein 29.5 18 0.0006 26.5 1.0 20 224-243 1-20 (69)
215 2jvm_A Uncharacterized protein 29.4 12 0.00042 28.3 0.2 17 40-56 51-67 (80)
216 2jvx_A NF-kappa-B essential mo 29.0 10 0.00036 22.9 -0.2 13 231-243 3-15 (28)
217 4bbq_A Lysine-specific demethy 28.9 14 0.00047 29.2 0.4 45 196-240 61-114 (117)
218 1b8t_A Protein (CRP1); LIM dom 28.5 33 0.0011 29.3 2.9 41 194-244 115-155 (192)
219 3mjh_B Early endosome antigen 27.9 11 0.00039 23.7 -0.2 11 195-205 6-16 (34)
220 2jz8_A Uncharacterized protein 27.8 25 0.00084 27.0 1.6 19 40-58 46-64 (87)
221 2i50_A Ubiquitin carboxyl-term 27.6 19 0.00065 29.3 1.0 14 21-34 94-107 (126)
222 3kqi_A GRC5, PHD finger protei 27.1 11 0.00037 27.7 -0.5 45 196-240 11-61 (75)
223 2uzg_A Ubiquitin carboxyl-term 27.0 19 0.00066 27.8 1.0 15 20-34 75-89 (97)
224 2jrp_A Putative cytoplasmic pr 26.9 16 0.00055 27.6 0.5 40 195-242 3-42 (81)
225 2iyb_E Testin, TESS, TES; LIM 26.4 45 0.0015 23.0 2.8 40 195-243 3-44 (65)
226 2rgt_A Fusion of LIM/homeobox 24.5 54 0.0018 27.3 3.4 40 195-243 66-105 (169)
227 2m0e_A Zinc finger and BTB dom 24.2 30 0.001 18.3 1.2 11 43-53 3-13 (29)
228 3kv5_D JMJC domain-containing 23.8 14 0.00047 37.1 -0.6 45 196-240 38-88 (488)
229 2jr6_A UPF0434 protein NMA0874 23.4 17 0.00058 26.5 -0.0 19 225-243 2-20 (68)
230 1wff_A Riken cDNA 2810002D23 p 23.3 84 0.0029 23.9 3.9 39 194-236 25-63 (85)
231 2kpi_A Uncharacterized protein 23.2 15 0.00051 25.7 -0.3 20 224-243 3-22 (56)
232 2xqn_T Testin, TESS; metal-bin 22.8 55 0.0019 25.6 3.0 46 194-243 30-75 (126)
233 2lv2_A Insulinoma-associated p 22.8 46 0.0016 24.7 2.3 35 20-54 25-68 (85)
234 2jmo_A Parkin; IBR, E3 ligase, 22.5 48 0.0016 24.5 2.4 31 22-53 24-61 (80)
235 1j2o_A FLIN2, fusion of rhombo 22.3 65 0.0022 24.9 3.3 39 195-243 4-42 (114)
236 2g6q_A Inhibitor of growth pro 22.3 18 0.00061 25.7 -0.1 41 194-239 11-59 (62)
237 3axs_A Probable N(2),N(2)-dime 22.2 34 0.0012 33.1 1.9 32 22-53 243-274 (392)
238 1ard_A Yeast transcription fac 21.7 34 0.0012 18.2 1.1 12 43-54 3-14 (29)
239 2epr_A POZ-, at HOOK-, and zin 21.6 74 0.0025 19.7 2.9 32 19-50 8-48 (48)
240 2jtn_A LIM domain-binding prot 21.5 66 0.0023 27.1 3.4 38 195-242 61-98 (182)
241 2k2d_A Ring finger and CHY zin 21.5 1E+02 0.0035 22.9 4.0 34 22-58 36-71 (79)
242 1b8t_A Protein (CRP1); LIM dom 21.1 55 0.0019 27.8 2.9 41 194-244 7-47 (192)
243 2ida_A Hypothetical protein; z 21.1 32 0.0011 27.0 1.2 15 20-34 72-86 (102)
244 4esj_A Type-2 restriction enzy 20.8 27 0.00093 31.8 0.8 29 24-52 35-66 (257)
245 2jtn_A LIM domain-binding prot 20.6 72 0.0024 26.9 3.5 40 195-243 120-159 (182)
246 2jrr_A Uncharacterized protein 20.5 14 0.00048 27.0 -1.0 17 40-56 38-54 (67)
247 2rgt_A Fusion of LIM/homeobox 20.5 65 0.0022 26.8 3.1 46 194-244 33-78 (169)
248 1ryq_A DNA-directed RNA polyme 20.4 45 0.0015 24.4 1.7 19 25-50 13-31 (69)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=131.56 Aligned_cols=79 Identities=34% Similarity=0.799 Sum_probs=69.2
Q ss_pred CCCCCCCCCHHHHhhCCcceeccccc-cCCCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 165 NRYGTPPASKSAIEALPSIKINEAMM-SSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 165 ~~~g~~pas~~~i~~lp~~~~~~~~~-~~~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
......+++++.|+.||.+++..... ..+...|+||++.|..++.++.|+|+|.||..||.+||+.+.+||+||+.+..
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45567889999999999998876543 33467899999999998889999999999999999999999999999999864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-17 Score=125.35 Aligned_cols=72 Identities=32% Similarity=0.743 Sum_probs=62.5
Q ss_pred CHHHHhhCCcceeccccccCCCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 173 SKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 173 s~~~i~~lp~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
+.+.++.||.+++.......+...|+||++.|..++.++.|+|+|+||..||.+||+.+.+||+||+.+...
T Consensus 2 s~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cHhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345678899988877665556789999999999988889999999999999999999999999999998753
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.51 E-value=9e-15 Score=104.39 Aligned_cols=50 Identities=44% Similarity=1.015 Sum_probs=46.3
Q ss_pred CCCccccccccccccCCceEcc-cCceecccchHHHhhcCCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
+...|+||++.|..++.+..++ |+|+||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3579999999999988899998 9999999999999999999999999874
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=2.4e-14 Score=109.56 Aligned_cols=52 Identities=50% Similarity=1.234 Sum_probs=47.5
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
+...|+||++.|.....++.|+|+|+||..||.+|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3579999999999888888999999999999999999999999999998753
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=107.26 Aligned_cols=52 Identities=31% Similarity=0.959 Sum_probs=47.5
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
+...|+||++.|..+..++.++|+|+||..||.+|++.+.+||+||..+...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3578999999998888899999999999999999999999999999998653
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-14 Score=108.13 Aligned_cols=50 Identities=36% Similarity=0.970 Sum_probs=46.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|+||++.|.....++.|+|+|+||..||.+|++.+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 57999999999988888899999999999999999999999999999864
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.43 E-value=9.6e-14 Score=98.87 Aligned_cols=50 Identities=28% Similarity=0.648 Sum_probs=43.8
Q ss_pred CCCcccccccccccc-CCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELN-EEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~-~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
+...|+||++.|... ..++.++|+|+||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999999654 45778899999999999999999999999999875
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.39 E-value=1.9e-13 Score=111.64 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=43.0
Q ss_pred CCCcccccccccccc---------------CCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELN---------------EEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~---------------~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
+...|+||++.|... ..++.++|+|.||..||.+||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 468999999999753 12567889999999999999999999999999864
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=107.00 Aligned_cols=50 Identities=24% Similarity=0.696 Sum_probs=41.3
Q ss_pred CCccccccccccc-----------cCCceEcc-cCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFEL-----------NEEARQMP-CKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~-----------~~~~~~lp-C~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
+..|+||++.|.. ++.++.++ |+|+||..||.+||+.+.+||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4678888877753 45566776 99999999999999999999999998863
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.37 E-value=1.9e-13 Score=102.24 Aligned_cols=52 Identities=23% Similarity=0.647 Sum_probs=45.2
Q ss_pred CCCcccccccccccc----CCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELN----EEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
+...|+||++.|... ..++.++|||.||..||.+|++.+.+||+||..+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 358999999998763 4458889999999999999999999999999998754
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=100.36 Aligned_cols=51 Identities=24% Similarity=0.656 Sum_probs=44.1
Q ss_pred CCCcccccccccccc----CCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 193 DSSQCAVCKDSFELN----EEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
+...|+||++.|... ..++.++|+|+||..||.+|++.+.+||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 357999999999763 334788999999999999999999999999998853
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.34 E-value=3.4e-13 Score=110.41 Aligned_cols=50 Identities=20% Similarity=0.610 Sum_probs=41.4
Q ss_pred CCccccccccccccC---------------CceEcccCceecccchHHHh-----hcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNE---------------EARQMPCKHIYHPDCIMPWL-----ELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~---------------~~~~lpC~H~FH~~Ci~~Wl-----~~~~sCP~CR~~l~~ 243 (352)
+..|+||++.|.... .++.++|+|+||..||..|| ..+.+||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999996643 34478899999999999999 457799999998854
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=3.9e-13 Score=98.29 Aligned_cols=51 Identities=24% Similarity=0.640 Sum_probs=44.5
Q ss_pred CCcccccccccccc----CCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELN----EEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|+||++.|... ..++.++|||.||..||.+|++.+.+||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 57899999998763 3457889999999999999999999999999998754
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.7e-13 Score=99.54 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
+...|+||++.+.. .+.++|+|+||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 35789999999866 688899999999999999999999999999986
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.6e-12 Score=96.64 Aligned_cols=48 Identities=23% Similarity=0.770 Sum_probs=42.8
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|+||++.+.. ..+.++|+|.||..||.+|++.+.+||+||..+..
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 5789999999864 35889999999999999999999999999998853
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.3e-13 Score=101.03 Aligned_cols=49 Identities=31% Similarity=0.891 Sum_probs=43.8
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDD 245 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~~ 245 (352)
+...|+||++.+.. +.++|+|.||..||.+|+..+.+||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 35799999999876 78999999999999999999999999999987544
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=97.78 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=43.1
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcCCCCCccCCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELHNSCPVCRYELPTDD 245 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~~ 245 (352)
...|+||++.|.. ++.+ +|+|.||..||..|++.+.+||+||+.+...+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 5799999999876 5565 89999999999999999999999999987543
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=100.06 Aligned_cols=51 Identities=24% Similarity=0.740 Sum_probs=43.4
Q ss_pred CCCccccccccccccCCceEcccC-----ceecccchHHHhhcC--CCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCK-----HIYHPDCIMPWLELH--NSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~-----H~FH~~Ci~~Wl~~~--~sCP~CR~~l~~~ 244 (352)
+...|.||+++|..++.+ ++||+ |.||..||++||..+ .+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 457999999999876655 68996 999999999999775 4899999998754
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.26 E-value=7.4e-13 Score=109.93 Aligned_cols=50 Identities=28% Similarity=0.620 Sum_probs=1.0
Q ss_pred CCCcccccccccccc-------------C--CceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELN-------------E--EARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~-------------~--~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
+...|+||++.|... + .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457999999999752 2 2333579999999999999999999999999864
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4e-12 Score=98.84 Aligned_cols=52 Identities=21% Similarity=0.547 Sum_probs=45.1
Q ss_pred CCCccccccccccccCC-ceEcccCceecccchHHHhhcC---CCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEE-ARQMPCKHIYHPDCIMPWLELH---NSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~~~---~sCP~CR~~l~~~ 244 (352)
+...|+||++.|...+. ++.++|||.||..||..|++.+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 35789999999987654 7888999999999999999876 7899999988653
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.24 E-value=4.6e-12 Score=96.14 Aligned_cols=48 Identities=29% Similarity=0.618 Sum_probs=42.0
Q ss_pred CCccccccccccccCCceEcc-cCceecccchHHHhhcC--CCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLELH--NSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~--~sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++.++ |+|.||..||..|++.+ .+||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 5799999999876 77899 99999999999999865 6899999986543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.7e-12 Score=97.52 Aligned_cols=46 Identities=17% Similarity=0.593 Sum_probs=42.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|+||++.|.. +++++|+|.||..||..|++...+||+||..+.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 5789999999866 678999999999999999999999999999985
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.3e-12 Score=94.93 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhh---cCCCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLE---LHNSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~---~~~sCP~CR~~l~~~ 244 (352)
+...|+||++.|.. ++.++|||.||..||..|++ .+..||+||..+..+
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 35799999999875 77889999999999999996 456899999998754
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.20 E-value=5.3e-12 Score=107.21 Aligned_cols=48 Identities=29% Similarity=0.816 Sum_probs=43.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++.++|||.||..||..|+..+.+||+||..+...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4689999999876 78899999999999999999999999999998654
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=5.1e-12 Score=93.53 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=41.5
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhh-cCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLE-LHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~-~~~sCP~CR~~l~~~ 244 (352)
...|+||++.+.. ++.++|||.||..||.+|+. ...+||+||..+..+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 5789999999876 55689999999999999994 567899999998754
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.18 E-value=1e-11 Score=94.68 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=43.4
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhc-CCCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL-HNSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~sCP~CR~~l~~~ 244 (352)
+...|+||++.|.. ++.++|||.||+.||..|+.. +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 35899999999876 778899999999999999987 78999999998654
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=94.47 Aligned_cols=50 Identities=18% Similarity=0.515 Sum_probs=42.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcC--CCCCccCCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH--NSCPVCRYELPTDD 245 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~--~sCP~CR~~l~~~~ 245 (352)
...|+||++.|..+... ..|+|.||..||.+||+.+ .+||+||.++....
T Consensus 15 i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 57999999999875433 3799999999999999887 89999999987543
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=2e-11 Score=93.81 Aligned_cols=48 Identities=27% Similarity=0.665 Sum_probs=42.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhc------CCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL------HNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~------~~sCP~CR~~l~~~ 244 (352)
...|+||++.|.. .+.++|+|.||..||..|+.. ...||+||..+...
T Consensus 19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 5799999999876 568999999999999999987 67899999998643
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=93.64 Aligned_cols=47 Identities=23% Similarity=0.652 Sum_probs=42.0
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhc------CCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL------HNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~------~~sCP~CR~~l~~ 243 (352)
...|+||++.|.. ++.++|+|.||..||..|+.. ...||+||..+..
T Consensus 19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5799999999866 667899999999999999987 7899999999864
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=99.00 Aligned_cols=48 Identities=29% Similarity=0.662 Sum_probs=42.5
Q ss_pred CCccccccccccccCCceE-cccCceecccchHHHhhcC-CCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQ-MPCKHIYHPDCIMPWLELH-NSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~-lpC~H~FH~~Ci~~Wl~~~-~sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++. ++|||.||..||..|+..+ .+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 5789999999975 667 8999999999999999887 6999999998643
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=2e-11 Score=101.44 Aligned_cols=53 Identities=23% Similarity=0.633 Sum_probs=45.7
Q ss_pred CCCcccccccccccc----CCceEcccCceecccchHHHhhcCCCCCccCCCCCCCC
Q 018689 193 DSSQCAVCKDSFELN----EEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDD 245 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~~ 245 (352)
+...|+||++.|... ..++.++|||.||..||.+||+.+.+||+||+.+...+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 458999999999763 34588999999999999999999999999999986543
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.11 E-value=8.2e-12 Score=95.21 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhc-------CCCCCccCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL-------HNSCPVCRYELPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-------~~sCP~CR~~l~~ 243 (352)
+...|+||++.|.. ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35799999999876 667899999999999999976 6689999999875
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.5e-11 Score=88.07 Aligned_cols=42 Identities=26% Similarity=0.647 Sum_probs=37.0
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhh---cCCCCCcc
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLE---LHNSCPVC 237 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~---~~~sCP~C 237 (352)
+...|+||++.|.. ++.++|||.||..||.+|++ ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35799999999876 77889999999999999997 45689998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.08 E-value=4.4e-11 Score=95.52 Aligned_cols=47 Identities=28% Similarity=0.725 Sum_probs=42.1
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|+||++.|.. ++.+ +|||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4789999999876 5666 899999999999999999999999999864
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.07 E-value=6.9e-11 Score=92.93 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=41.2
Q ss_pred CCCccccccccccccCCceEcc-cCceecccchHHHhhcC--CCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLELH--NSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~--~sCP~CR~~l~ 242 (352)
+...|+||++.|.. ++.++ |||.||..||..|+..+ .+||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35899999999876 78899 99999999999999754 58999999973
No 36
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.07 E-value=3.5e-11 Score=118.40 Aligned_cols=47 Identities=28% Similarity=0.773 Sum_probs=42.1
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhh-cCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLE-LHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~-~~~sCP~CR~~l~~ 243 (352)
...|+||++.+.. ++.+||||.||..||..|+. .+.+||+||..+..
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3689999999865 78899999999999999998 68899999998864
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.07 E-value=4.6e-11 Score=96.96 Aligned_cols=48 Identities=27% Similarity=0.695 Sum_probs=42.9
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++.+ +|||.||..||..|+..+.+||+||..+...
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 5899999999876 5666 9999999999999999999999999998754
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=4.6e-11 Score=99.24 Aligned_cols=53 Identities=25% Similarity=0.649 Sum_probs=45.2
Q ss_pred CCCCcccccccccccc----CCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 192 SDSSQCAVCKDSFELN----EEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 192 ~~~~~C~IC~e~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
.+...|+||++.|... ...+.++|||.||..||.+||+.+.+||+||..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 3468899999998762 3347889999999999999999999999999998753
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.05 E-value=6.4e-11 Score=98.46 Aligned_cols=47 Identities=30% Similarity=0.643 Sum_probs=41.7
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCC-CCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHN-SCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-sCP~CR~~l~~ 243 (352)
...|+||++.|.. ++.++|||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4789999999986 78899999999999999998544 99999999865
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=7.4e-11 Score=86.94 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=40.9
Q ss_pred CCccccccc-cccccCC-ceEcccCceecccchHHHhhc-CCCCCccCCCCCCC
Q 018689 194 SSQCAVCKD-SFELNEE-ARQMPCKHIYHPDCIMPWLEL-HNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e-~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~~-~~sCP~CR~~l~~~ 244 (352)
+..|+||++ .|..... ...++|||.||..||.+|+.. ..+||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 478999999 7765433 256789999999999999754 56899999998654
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5.8e-11 Score=85.08 Aligned_cols=42 Identities=31% Similarity=0.799 Sum_probs=36.2
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHh---hcCCCCCcc
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWL---ELHNSCPVC 237 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl---~~~~sCP~C 237 (352)
+...|+||++.|.. .+.++|+|.||..||.+|+ ..+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35799999999876 5678999999999999995 456789998
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.1e-10 Score=94.78 Aligned_cols=48 Identities=21% Similarity=0.692 Sum_probs=41.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCC---CCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHN---SCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~---sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++.++|||.||..||..|+..+. +||+||..+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4689999999865 56789999999999999998654 899999988653
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.00 E-value=1.1e-10 Score=96.34 Aligned_cols=49 Identities=27% Similarity=0.547 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCC-CCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHN-SCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-sCP~CR~~l~~~ 244 (352)
+...|+||++.|.. ++.++|||.||..||..|+.... +||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 35799999999876 67889999999999999998765 999999998754
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=1.5e-10 Score=100.79 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=41.1
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhc-CCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL-HNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~-~~sCP~CR~~l~~ 243 (352)
...|+||++.|.. ++.+ +|||.||..||..|+.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4689999999976 5555 89999999999999987 7889999999854
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=98.92 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=42.5
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCC-CCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHN-SCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++.++|||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4789999999876 77899999999999999998754 899999998754
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=95.71 Aligned_cols=46 Identities=26% Similarity=0.689 Sum_probs=41.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhc-CCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL-HNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~sCP~CR~~l~ 242 (352)
...|+||++.|.. ++.++|||.||..||..|+.. +.+||+||..+.
T Consensus 15 ~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4789999999875 788899999999999999976 678999999885
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.96 E-value=2.2e-10 Score=89.53 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=44.7
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
+...|+||++.|.+ +++++|||.|++.||..||..+.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 35899999999988 88999999999999999999899999999988654
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.95 E-value=3.3e-10 Score=91.32 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDD 245 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~~ 245 (352)
+...|+||++.|.+ +++++|||.|++.||..||..+.+||+||..+...+
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 36899999999988 889999999999999999998899999999987654
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=4.1e-10 Score=90.44 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=45.0
Q ss_pred CCccccccccccccCCceEcccC-ceecccchHHHhhcCCCCCccCCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCK-HIYHPDCIMPWLELHNSCPVCRYELPTDD 245 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~-H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~~ 245 (352)
...|+||++.|++ +++++|| |.|++.||.+||..+.+||+||..+...+
T Consensus 22 ~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 22 EFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred hcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 5899999999988 8899999 99999999999998899999999997654
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=3e-10 Score=81.65 Aligned_cols=45 Identities=22% Similarity=0.648 Sum_probs=39.2
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
+...|+||++.|.. ++.|+|+|.||..||..| ...||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 35789999999876 688999999999999885 6689999998864
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.92 E-value=3.4e-10 Score=92.88 Aligned_cols=48 Identities=29% Similarity=0.723 Sum_probs=42.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhc-CCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL-HNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++.++|||.||..||..|+.. ..+||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4789999999876 677999999999999999987 77999999998643
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=6.4e-10 Score=82.23 Aligned_cols=47 Identities=19% Similarity=0.452 Sum_probs=40.7
Q ss_pred CCCccccccccccccCCceEc--ccCce-ecccchHHHhhcCCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQM--PCKHI-YHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~l--pC~H~-FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
+...|.||++.+.. ...+ ||||. |+..|+..|++.+..||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 35789999998765 5555 99999 899999999998899999999885
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=9.3e-10 Score=90.59 Aligned_cols=46 Identities=22% Similarity=0.609 Sum_probs=40.6
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|+||++.|.. ++.+ +|||.||..||..|+. ..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 5799999999876 6777 8999999999999998 7899999998543
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=6.3e-10 Score=95.03 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=41.8
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcCC-CCCccCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHN-SCPVCRYELPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-sCP~CR~~l~~ 243 (352)
+...|+||++.|.. ++.++|||.||..||.+|+.... +||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 35899999999877 67789999999999999998665 89999998743
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=1.1e-09 Score=84.28 Aligned_cols=52 Identities=25% Similarity=0.611 Sum_probs=41.0
Q ss_pred CCCccccccccccccCCceEcc--cCceecccchHHHhh-cCCCCCccCCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMP--CKHIYHPDCIMPWLE-LHNSCPVCRYELPTDD 245 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lp--C~H~FH~~Ci~~Wl~-~~~sCP~CR~~l~~~~ 245 (352)
+...|+||++.+...+ ...+| |||.||..||..|+. ....||+||+.+....
T Consensus 10 ~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4579999999886532 34444 999999999999884 3568999999987544
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.80 E-value=1.8e-09 Score=79.54 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=39.8
Q ss_pred CCccccccccccccCCceEc--ccCce-ecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM--PCKHI-YHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l--pC~H~-FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|.||++.+.. ...+ ||||. |+..|+..|.+....||+||..+.
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4789999998654 4455 99998 999999999988889999999885
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.72 E-value=2.6e-09 Score=81.07 Aligned_cols=43 Identities=23% Similarity=0.594 Sum_probs=38.3
Q ss_pred CCccccccccccccCCceEcccCce-ecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHI-YHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4789999998766 788999999 999999999 789999998853
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=5.4e-09 Score=97.14 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhc-CCCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL-HNSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~sCP~CR~~l~~~ 244 (352)
+...|+||++.|.+ +++++|||.||+.||..||.. +.+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 35899999999987 889999999999999999986 44599999998643
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=3.1e-09 Score=84.39 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=40.8
Q ss_pred CCCccccccccccccCCceEcc-cCceecccchHHHhhcC------CCCCc--cCCC-CCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLELH------NSCPV--CRYE-LPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~------~sCP~--CR~~-l~~ 243 (352)
+...|+||++.|.+ +++++ |||.|++.||..||..+ .+||+ |+.. +..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 35899999999987 88886 99999999999999764 48999 9876 543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.68 E-value=5.1e-09 Score=91.47 Aligned_cols=49 Identities=27% Similarity=0.553 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcC-CCCCccCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTD 244 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-~sCP~CR~~l~~~ 244 (352)
+...|+||++.|.. ++.++|||.||..||.+|+... .+||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 35899999999876 6778999999999999999764 4999999998753
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.64 E-value=7.5e-09 Score=99.74 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=39.5
Q ss_pred CCCccccccccccccCCc-----eEcccCceecccchHHHhhcC-----------CCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEA-----RQMPCKHIYHPDCIMPWLELH-----------NSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~-----~~lpC~H~FH~~Ci~~Wl~~~-----------~sCP~CR~~l~ 242 (352)
...+|+||++.+..+..+ ....|+|.||..||.+||+.. .+||+||++|.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 467999999998873322 124699999999999999752 46999999875
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.1e-08 Score=77.60 Aligned_cols=44 Identities=23% Similarity=0.589 Sum_probs=37.3
Q ss_pred CCccccccccccccCCceEcccCce-ecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHI-YHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|+||++.+.. ++.+||||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4689999999766 778999999 99999964 47899999998653
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.8e-08 Score=73.60 Aligned_cols=44 Identities=27% Similarity=0.708 Sum_probs=37.8
Q ss_pred CCCccccccccccccCCceEcccCce-ecccchHHHhhcCCCCCccCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHI-YHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
+...|.||++.+.. ++.+||+|. |+..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 45799999998655 889999999 99999984 5789999998864
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.56 E-value=1.9e-08 Score=89.24 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=42.7
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcC-CCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH-NSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-~sCP~CR~~l~~~ 244 (352)
...|+||++.|.+ +++++|||.|++.||..||..+ .+||+|+..+...
T Consensus 106 ~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 106 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred hhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 5899999999987 8899999999999999999764 5799999988654
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.51 E-value=3.4e-08 Score=72.17 Aligned_cols=48 Identities=27% Similarity=0.745 Sum_probs=37.5
Q ss_pred CCCccccccccccccCCceEcccC--c---eecccchHHHhhc--CCCCCccCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCK--H---IYHPDCIMPWLEL--HNSCPVCRYELPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~--H---~FH~~Ci~~Wl~~--~~sCP~CR~~l~~ 243 (352)
+...|.||+++. ++. .++||. | .||..||.+||.. +.+||+|++.+..
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 357899999973 233 468854 4 9999999999964 6789999998753
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.44 E-value=5e-08 Score=71.49 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=42.2
Q ss_pred CccccccccccccCCceEc-ccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
..|+||++.|++ ++++ +|||+|.+.||.+||+.+.+||+++.+|..+
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 689999999986 6777 8999999999999999888999999998654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=4.4e-08 Score=77.34 Aligned_cols=47 Identities=28% Similarity=0.691 Sum_probs=38.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhc--------CCCCCc--cCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL--------HNSCPV--CRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~--------~~sCP~--CR~~ 240 (352)
..+|+||++.+.........+|+|.||..||..+++. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5789999999876544444579999999999999853 237999 9998
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.43 E-value=4.5e-08 Score=75.30 Aligned_cols=43 Identities=30% Similarity=0.648 Sum_probs=37.5
Q ss_pred CCccccccccccccCCceEcccCce-ecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHI-YHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|.||++.+.. ++.+||||. |+..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4689999998765 888999999 999999987 389999998864
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=1.8e-07 Score=90.97 Aligned_cols=44 Identities=27% Similarity=0.684 Sum_probs=38.9
Q ss_pred CCCccccccccccccCCceEcccCce-ecccchHHHhhcCCCCCccCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHI-YHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 35799999999866 788999999 999999998 789999998853
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.4e-07 Score=86.42 Aligned_cols=49 Identities=22% Similarity=0.532 Sum_probs=41.1
Q ss_pred CCccccccccccccCCceE-cccCceecccchHHHhhcC--CCCCc--cCCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQ-MPCKHIYHPDCIMPWLELH--NSCPV--CRYELPTDD 245 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~-lpC~H~FH~~Ci~~Wl~~~--~sCP~--CR~~l~~~~ 245 (352)
...|+||++.|.. ++. +.|||.|++.||..|++.+ .+||+ |++.+...+
T Consensus 181 el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 181 ELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 5799999999977 555 5899999999999999764 47999 999876543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.96 E-value=3e-06 Score=67.59 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=39.0
Q ss_pred ccccccccccccCCceEcccCceecccchHHHhh-cCCCCCccCCCCCC
Q 018689 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLE-LHNSCPVCRYELPT 243 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~-~~~sCP~CR~~l~~ 243 (352)
-|.+|--.+.. ..+.+||+|+||.+|+..|.+ ..++||.|+..+..
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 48888777665 688999999999999999985 46899999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.85 E-value=4.8e-06 Score=76.91 Aligned_cols=50 Identities=18% Similarity=0.519 Sum_probs=40.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCC--CCCccCCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHN--SCPVCRYELPTDD 245 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~--sCP~CR~~l~~~~ 245 (352)
...|.||.+.+..+... -.|+|.||..|+.+|++.+. .||.|+..++...
T Consensus 180 i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 57899999998875322 23999999999999997654 8999999887543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.52 E-value=0.0049 Score=48.41 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=40.0
Q ss_pred CCccccccccccccCCceEccc-CceecccchHHHhhcCCCCCccCCCCCCCCh
Q 018689 194 SSQCAVCKDSFELNEEARQMPC-KHIYHPDCIMPWLELHNSCPVCRYELPTDDP 246 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC-~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~~~ 246 (352)
-..|..|+-..+. ++.| .|.+|..|+...|.....||+|+++|+++-.
T Consensus 28 ~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 4789999877543 4556 6999999999999999999999999987643
No 74
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=94.53 E-value=0.023 Score=41.47 Aligned_cols=48 Identities=19% Similarity=0.542 Sum_probs=29.6
Q ss_pred CCccccCCCCCCCCCceeeecCCcccccCCCCCCCCcCCCCCCCceEEcc
Q 018689 8 FGGAAAAAPPQQEPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEELE 57 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~ 57 (352)
+.||.|..++.+..-.|-|-.|...|.+.. ...+.||+|+...|...-
T Consensus 6 ~~~g~~~~~~~~~~v~Y~C~~Cg~~~~l~~--~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 6 STGGTAFNPPRPATMIYLCADCGARNTIQA--KEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp -------------CCCCBCSSSCCBCCCCS--SSCCCCSSSCCCCCBCCC
T ss_pred cCCccccCCCCCCCeEEECCCCCCeeecCC--CCceECCCCCcEEEEEec
Confidence 344445555555678899999999998764 467999999999887654
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.74 E-value=0.042 Score=40.40 Aligned_cols=44 Identities=23% Similarity=0.599 Sum_probs=32.3
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcCC----CCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELHN----SCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~----sCP~CR~~l 241 (352)
...|.||.+. + +++.- .|...||..|+.+.|.... .||.|+...
T Consensus 12 ~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 5789999753 3 33333 4999999999999886532 699997654
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.12 E-value=0.039 Score=43.19 Aligned_cols=34 Identities=15% Similarity=0.423 Sum_probs=25.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHH
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPW 227 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~W 227 (352)
+..|.||++.+.......-+.|+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4789999986533222333899999999999983
No 77
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=91.66 E-value=0.11 Score=42.28 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=27.3
Q ss_pred CCCceeeecCCcccccCCCCCCCC-cCCCCCCCceEEcc
Q 018689 20 EPQMYFCHQCNRTVRVTPSPSSDL-VCPSCNGGFIEELE 57 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~~~~~~~-~CP~C~~gFvEEi~ 57 (352)
.+..|||..|...+.+. .... .||.|++..++-+.
T Consensus 70 ~p~~~~C~~CG~~~e~~---~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPN---ALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp ECCEEECSSSSCEECSC---CSTTCCCSSSSSCCCEEEE
T ss_pred ccceEEcCCCCCEEeCC---CCCCCcCccccCCCcEEec
Confidence 35789999999988653 2456 89999999877554
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.71 E-value=0.097 Score=37.74 Aligned_cols=48 Identities=25% Similarity=0.548 Sum_probs=33.8
Q ss_pred CCCccccccccccccCCceEc-ccCceecccchHHHhh-----cCCCCCccCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLE-----LHNSCPVCRYE 240 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~-----~~~sCP~CR~~ 240 (352)
+...|+||...+..+...+.- .|...||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 357899999887654444444 4999999999875432 24579999764
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.71 E-value=0.13 Score=39.61 Aligned_cols=33 Identities=18% Similarity=0.546 Sum_probs=22.5
Q ss_pred CCccccccccccccCCceEcccCceecccchHHH
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPW 227 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~W 227 (352)
+..|.||- .|..++....=-|+-+||..|+.+-
T Consensus 15 D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCccc-cccccceeccccccccccHhhcccc
Confidence 58999994 3444322222228999999999996
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.62 E-value=0.27 Score=38.20 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=32.8
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcC----CCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH----NSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~----~sCP~CR~~l~ 242 (352)
....|.||... ++-+..-.|.-.||..|+.+=|... -.||.|+..-.
T Consensus 24 n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 35789999865 3322222489999999998876542 26999986543
No 81
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=88.15 E-value=0.43 Score=35.76 Aligned_cols=32 Identities=28% Similarity=0.620 Sum_probs=24.9
Q ss_pred CCCCCceeeecCCcccccCCCCCCCCcCCCCCCCceEE
Q 018689 18 QQEPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEE 55 (352)
Q Consensus 18 ~~~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 55 (352)
+.-.....|+.|.+.|-+. .+.| +|+.-|=-.
T Consensus 20 ~~k~~~~RC~~C~kkvgL~-----~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 20 PPKSTATRCLSCNKKVGVT-----GFKC-RCGSTFCGT 51 (74)
T ss_dssp CTTCCCCBCSSSCCBCTTT-----CEEC-TTSCEECTT
T ss_pred cCcccCccchhhcCccccc-----ceEe-ccCCEeccc
Confidence 4455678999999998765 4999 899988643
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=86.44 E-value=0.41 Score=42.04 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=35.4
Q ss_pred CccccccccccccCC---ceEcc-cCceecccchHHH------hh-----cCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEE---ARQMP-CKHIYHPDCIMPW------LE-----LHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~---~~~lp-C~H~FH~~Ci~~W------l~-----~~~sCP~CR~~l~~ 243 (352)
..|+||...|..++. .+..- |...||..|+.-- +. ..-.||.|+..-+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 569999999987753 44444 9999999998532 11 15689999886543
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.84 E-value=0.54 Score=33.61 Aligned_cols=46 Identities=33% Similarity=0.542 Sum_probs=31.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcC----CCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH----NSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~----~sCP~CR~~l~ 242 (352)
...|.||.+. ++-+.--.|...||..|+.+-|... -.||.|+....
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 9 MEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 5789999863 2223223489999999999766432 25999977543
No 84
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=85.75 E-value=0.44 Score=34.75 Aligned_cols=32 Identities=25% Similarity=0.572 Sum_probs=24.3
Q ss_pred CCCCCceeeecCCcccccCCCCCCCCcCCCCCCCceEE
Q 018689 18 QQEPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEE 55 (352)
Q Consensus 18 ~~~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 55 (352)
........|..|.+.|.+. .+.| +|+.-|=-.
T Consensus 10 ~~~~~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 10 RPVRPNNRCFSCNKKVGVM-----GFKC-KCGSTFCGS 41 (64)
T ss_dssp CCSCCSCSCTTTCCCCTTS-----CEEC-TTSCEECSS
T ss_pred CCCCcCCcChhhCCccccc-----CeEe-ecCCEeccc
Confidence 3344567899999998764 3899 999988644
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.74 E-value=0.24 Score=34.76 Aligned_cols=44 Identities=32% Similarity=0.693 Sum_probs=29.8
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhcC----CCCCccCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH----NSCPVCRY 239 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~----~sCP~CR~ 239 (352)
.+..|.||... ++-+.--.|...||..|+.+-|... -.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 35789999874 3223223499999999999766432 25888854
No 86
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=85.14 E-value=0.56 Score=35.83 Aligned_cols=39 Identities=21% Similarity=0.547 Sum_probs=28.5
Q ss_pred CCCCCCCceeeecCCcccccCCCCCCCCcCCCCCCCceEE
Q 018689 16 PPQQEPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEE 55 (352)
Q Consensus 16 ~~~~~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 55 (352)
........+||-.|...|...+ ....+.||.|+..|-=.
T Consensus 18 ~v~~~~~~~wCP~C~~~~~~~~-~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 18 VLMRDPKFLWCAQCSFGFIYER-EQLEATCPQCHQTFCVR 56 (86)
T ss_dssp CCCSCCCEECCSSSCCCEECCC-SCSCEECTTTCCEECSS
T ss_pred HHhcCCCEeECcCCCchheecC-CCCceEeCCCCCccccc
Confidence 3345678899999999875443 24568999999887643
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.89 E-value=0.47 Score=41.24 Aligned_cols=44 Identities=30% Similarity=0.622 Sum_probs=32.1
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcC----CCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELH----NSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~----~sCP~CR~~l 241 (352)
+..|.||... ++ +... .|...||..|+.+-|... -.||.|+...
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4789999854 33 3333 399999999998877542 3699998754
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.99 E-value=0.48 Score=32.37 Aligned_cols=44 Identities=27% Similarity=0.547 Sum_probs=28.7
Q ss_pred ccccccccccccCCceEcccCceecccchHHHhhcC----CCCCccCC
Q 018689 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH----NSCPVCRY 239 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~----~sCP~CR~ 239 (352)
.|.||...-..++-+.--.|...||..|+.+=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998753322222222499999999998655432 25999965
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.62 E-value=0.52 Score=33.71 Aligned_cols=43 Identities=35% Similarity=0.725 Sum_probs=30.4
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhc----CCCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL----HNSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~----~~sCP~CR~~ 240 (352)
...|.||... + .+..- .|...||..|+.+-|.. .-.||.|+..
T Consensus 11 ~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 5789999873 2 23333 48999999999986543 2369999653
No 90
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=83.58 E-value=1 Score=30.68 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=27.3
Q ss_pred CceeeecCCcccccCCC-CCCCCcCCCCCCCceEEccCC
Q 018689 22 QMYFCHQCNRTVRVTPS-PSSDLVCPSCNGGFIEELETP 59 (352)
Q Consensus 22 ~~ywCh~C~r~V~~~~~-~~~~~~CP~C~~gFvEEi~~~ 59 (352)
..|-|-.|-+++..... ....+.||+|+=..+..+-.+
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~p 40 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKP 40 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEEecCC
Confidence 46999999999876543 257899999998877766543
No 91
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.95 E-value=0.61 Score=50.57 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=44.0
Q ss_pred CCCccccccccccccCCceEcccC-ceecccchHHHhhcCCCCCccCCCCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCK-HIYHPDCIMPWLELHNSCPVCRYELPTDD 245 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~-H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~~ 245 (352)
+...|+|-++.|.+ ++++|-| +.|-+.+|.+||..+.+||+=|.++...+
T Consensus 890 ~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 35789999999887 8999987 68999999999999999999999987543
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.32 E-value=0.61 Score=41.39 Aligned_cols=44 Identities=27% Similarity=0.582 Sum_probs=31.7
Q ss_pred CCccccccccccccCCceEcc-cCceecccchHHHhhcC----CCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLELH----NSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~----~sCP~CR~~l 241 (352)
...|.||... ++ +.... |...||..|+.+.|... -.||.|+..-
T Consensus 7 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 5789999754 22 33333 89999999998877543 3699998754
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=80.77 E-value=0.95 Score=36.00 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=30.0
Q ss_pred CCCccccccccccccCCceEcccCceecccchHHHhhc----CCCCCccC
Q 018689 193 DSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL----HNSCPVCR 238 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~----~~sCP~CR 238 (352)
++..|.||.+.-+..+-+.--.|...||..|+..++.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35789999876332222333359999999999987642 22466654
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.04 E-value=1.2 Score=34.98 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhc---CCCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL---HNSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~sCP~CR~~l 241 (352)
...| ||......+.-+..-.|.-.||..|+..=+.. .-.||.|+..-
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRN 77 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSC
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCC
Confidence 3567 88776544332322349999999999764332 34799997543
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.54 E-value=1 Score=36.02 Aligned_cols=45 Identities=24% Similarity=0.542 Sum_probs=29.8
Q ss_pred CccccccccccccCCceEc-ccCceecccchHHHhhcC----CCCCccCC
Q 018689 195 SQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELH----NSCPVCRY 239 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~----~sCP~CR~ 239 (352)
..|.||...-...+.+..- .|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688887642222233333 399999999998766442 26999975
No 96
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=79.36 E-value=0.4 Score=38.24 Aligned_cols=48 Identities=17% Similarity=0.424 Sum_probs=34.2
Q ss_pred CCccccccccccccCCceEc--ccCceecccchHHHhh----------cCCCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM--PCKHIYHPDCIMPWLE----------LHNSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l--pC~H~FH~~Ci~~Wl~----------~~~sCP~CR~~l 241 (352)
...|.||...+......+.. .|...||..|+.--.. .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 35799999998665555554 4899999999853210 344799997654
No 97
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.30 E-value=0.35 Score=35.88 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=32.6
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhc----CCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL----HNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~----~~sCP~CR~~l~ 242 (352)
...|.||..... ++..+.. .|...||..|+..-+.. .-.||.|+..+.
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 457999987643 3233333 38999999999865532 346999976553
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=78.91 E-value=0.63 Score=33.50 Aligned_cols=50 Identities=22% Similarity=0.572 Sum_probs=33.3
Q ss_pred CCCccccccccccc-cCCceEc-ccCceecccchHHHhhc-------CCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFEL-NEEARQM-PCKHIYHPDCIMPWLEL-------HNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~-~~~~~~l-pC~H~FH~~Ci~~Wl~~-------~~sCP~CR~~l~ 242 (352)
+...|.||...... ...++.- .|.-.||..|+.+-|.. .-.|+.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 35789999976433 2233333 39999999999975532 236999976543
No 99
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=78.53 E-value=1.4 Score=30.25 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=29.2
Q ss_pred ccccccccccccCCceEc--ccCceecccchHHHh----hcCCCCCccC
Q 018689 196 QCAVCKDSFELNEEARQM--PCKHIYHPDCIMPWL----ELHNSCPVCR 238 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~l--pC~H~FH~~Ci~~Wl----~~~~sCP~CR 238 (352)
.|.||...+..+...+.- .|...||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588998887654444433 488899999976432 2456799885
No 100
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.38 E-value=1.3 Score=32.30 Aligned_cols=30 Identities=23% Similarity=0.606 Sum_probs=23.2
Q ss_pred CCCceeeecCCcccccCCCCCCCCcCCCCCCCceEE
Q 018689 20 EPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEE 55 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 55 (352)
......|..|.+.|-+. .+.| +|+.-|=-.
T Consensus 12 k~~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLT-----GFMC-RCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTT-----CEEC-SSSCEECTT
T ss_pred CCcCCcChhhCCccCcc-----CEEe-ecCCEeccc
Confidence 44567899999998764 3899 899988643
No 101
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=77.11 E-value=1.1 Score=37.38 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=25.7
Q ss_pred CCCceeeecCCcccccCCC--------CCC----------CCcCCCCCCCceEE
Q 018689 20 EPQMYFCHQCNRTVRVTPS--------PSS----------DLVCPSCNGGFIEE 55 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~~--------~~~----------~~~CP~C~~gFvEE 55 (352)
.+..+||..|...+.+... ... ...||.|++.-++-
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEV 120 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEE
Confidence 3579999999998765320 002 57899999987763
No 102
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=76.86 E-value=1.9 Score=31.85 Aligned_cols=36 Identities=14% Similarity=0.541 Sum_probs=28.2
Q ss_pred CCCceeeecCCcccccCCCCCCCCcCCCCCCCceEEcc
Q 018689 20 EPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEELE 57 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~ 57 (352)
..-.|-|-.|...+.+.. ...+.||+|+...|-..-
T Consensus 25 ~~v~Y~C~~CG~~~e~~~--~d~irCp~CG~RILyK~R 60 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSR--TDAVRCKDCGHRILLKAR 60 (70)
T ss_dssp CCCCEECSSSCCEECCCT--TSTTCCSSSCCCCCBCCC
T ss_pred ceEEEECCCCCCcceeCC--CCCccCCCCCceEeEecC
Confidence 567899999999987653 467899999997665543
No 103
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.83 E-value=0.8 Score=33.17 Aligned_cols=44 Identities=30% Similarity=0.648 Sum_probs=30.8
Q ss_pred CCCccccccccccccCCceEc-ccCceecccchHHHhhcC----CCCCccCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELH----NSCPVCRYE 240 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~----~sCP~CR~~ 240 (352)
.+..|.||.+. + .++.- .|...||..|+.+-|... -.||.|...
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35789999864 2 23333 499999999999766432 259999653
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.71 E-value=0.71 Score=35.87 Aligned_cols=45 Identities=31% Similarity=0.534 Sum_probs=30.5
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcC----CCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELH----NSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~----~sCP~CR~ 239 (352)
...|.||...-... .++.. .|...||..|+.+=|... =.||.|+.
T Consensus 16 ~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 56899998764322 23333 499999999998655432 25999964
No 105
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=76.63 E-value=1.2 Score=37.76 Aligned_cols=33 Identities=24% Similarity=0.594 Sum_probs=23.5
Q ss_pred CCCceeeecCCcccccCCCCCCCCcCCCCCCCceEEc
Q 018689 20 EPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEEL 56 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi 56 (352)
-.-.|.|+.|.+..... .....||.|++. +..+
T Consensus 129 ~~~~y~C~~Cg~~~~~~---~~~~~Cp~CG~~-~~~~ 161 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTL---PPGGVCPDCGSK-VKLI 161 (165)
T ss_dssp CCCCEEESSSCCEESSC---CGGGBCTTTCCB-EEEC
T ss_pred ccEEEECCCCCCcccCC---CCCCcCCCCCCc-ceeC
Confidence 34479999999876432 234699999998 5444
No 106
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.74 E-value=0.92 Score=43.89 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=33.0
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhh---c--CCCCCccCCCCCCCCh
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLE---L--HNSCPVCRYELPTDDP 246 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~---~--~~sCP~CR~~l~~~~~ 246 (352)
...|+|-+..|.. .++-..|.|.=|.+ +..||. + .-.||+|.+.+...+.
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeeCCCccceecc--CCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 3689998887765 46667799973332 333442 2 3379999998876553
No 107
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.62 E-value=2.7 Score=32.63 Aligned_cols=44 Identities=25% Similarity=0.510 Sum_probs=27.1
Q ss_pred CCccccccccccccCCceEcc--cC-ceecccchHHHhhc----CCCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMP--CK-HIYHPDCIMPWLEL----HNSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lp--C~-H~FH~~Ci~~Wl~~----~~sCP~CR~~l 241 (352)
..-| ||..... +.-+..=. |. ..||..||. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4566 9988642 32222223 55 689999997 332 34699997654
No 108
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=75.15 E-value=1.2 Score=39.01 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=31.2
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhc----CCCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLEL----HNSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~----~~sCP~CR~~ 240 (352)
...|.||.+. ++-+..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3679999865 333444458999999999876643 2269999765
No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=73.73 E-value=1.1 Score=33.62 Aligned_cols=43 Identities=26% Similarity=0.586 Sum_probs=26.1
Q ss_pred ccccccccccccCCceEc-ccCceecccchHHHhhcC-----CCCCccCC
Q 018689 196 QCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELH-----NSCPVCRY 239 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~-----~sCP~CR~ 239 (352)
.|.||...-.. +.+..- .|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666544222 122222 389999999999876431 36999975
No 110
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.87 E-value=1.8 Score=32.31 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=31.1
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhh-----cCCCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLE-----LHNSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~-----~~~sCP~CR~~l 241 (352)
...| ||...+......+.. .|...||..|+.--.. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 998877543334443 3999999999863321 245799998754
No 111
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=71.57 E-value=1.2 Score=31.43 Aligned_cols=44 Identities=32% Similarity=0.703 Sum_probs=30.2
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcC----CCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH----NSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~----~sCP~CR~~ 240 (352)
+..|.||... ++-+.--.|...||..|+.+-|... -.||.|+..
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 5789999874 3223222499999999999766432 259999553
No 112
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=71.49 E-value=3.5 Score=30.77 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=23.2
Q ss_pred CCCceeeecCCcccccCCCCCCCCcCCCCCCCceEE
Q 018689 20 EPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEE 55 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 55 (352)
......|+.|.+.|-+.+ +.|. |+.-|--.
T Consensus 22 k~~~nRC~~CrKkvgL~g-----f~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGLTG-----FDCR-CGNLFCGL 51 (74)
T ss_dssp CSCTTBCSSSCCBCGGGC-----EECT-TSCEECSS
T ss_pred CCcCCcChhhCCcccccC-----eecC-CCCEechh
Confidence 345679999999987753 8999 99877643
No 113
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.20 E-value=1.3 Score=42.97 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=33.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhh---c--CCCCCccCCCCCCCCh
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLE---L--HNSCPVCRYELPTDDP 246 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~---~--~~sCP~CR~~l~~~~~ 246 (352)
...|+|-+..|.. .++-..|.|+-|.+ +..||. + .-.||+|.+.+...+.
T Consensus 249 SL~CPlS~~ri~~--PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred eecCCCccccccc--cCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 4689988887765 46667799974433 233443 2 3379999998866553
No 114
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.45 E-value=0.7 Score=35.56 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=33.1
Q ss_pred CCcccccccccccc-CCceEc-ccCceecccchHHHhhc--------CCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELN-EEARQM-PCKHIYHPDCIMPWLEL--------HNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~-~~~~~l-pC~H~FH~~Ci~~Wl~~--------~~sCP~CR~~l~ 242 (352)
...|.||...-... ..++.. .|...||..|+.+-|.. .=.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 47899998763321 233333 39999999999987642 226999976543
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=68.45 E-value=4.7 Score=29.63 Aligned_cols=43 Identities=26% Similarity=0.554 Sum_probs=26.6
Q ss_pred CCccccccccccccCCceEc-c--cC-ceecccchHHHhhc----CCCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-P--CK-HIYHPDCIMPWLEL----HNSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-p--C~-H~FH~~Ci~~Wl~~----~~sCP~CR~~l 241 (352)
..-| ||..... +. .+.- . |. ..||..||. |.. +-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 4567 8987532 22 2221 2 55 689999997 432 33699997654
No 116
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.92 E-value=2.3 Score=31.84 Aligned_cols=44 Identities=30% Similarity=0.616 Sum_probs=28.4
Q ss_pred CccccccccccccCCceEc-ccCceecccchHHHhhc-----CCCCCccCC
Q 018689 195 SQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL-----HNSCPVCRY 239 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~-----~~sCP~CR~ 239 (352)
..|.||...-. +..+..- .|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37888875422 2223333 38999999999976543 225998864
No 117
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.58 E-value=2.4 Score=30.66 Aligned_cols=33 Identities=18% Similarity=0.513 Sum_probs=25.3
Q ss_pred CCccccccccccccCCceEc--ccCceecccchHH
Q 018689 194 SSQCAVCKDSFELNEEARQM--PCKHIYHPDCIMP 226 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l--pC~H~FH~~Ci~~ 226 (352)
...|.+|...+..+...+.. .|.-.||..|+.-
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 57899999998776555544 5999999999753
No 118
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=67.18 E-value=3.2 Score=30.07 Aligned_cols=38 Identities=21% Similarity=0.633 Sum_probs=24.8
Q ss_pred ccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 196 QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
.|..|.+.+..++.+..+ +..||..|+ .|-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEEC--CccccCCCC--------CccccCccCCC
Confidence 477777777654443333 777888775 37778777754
No 119
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.67 E-value=4 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=30.9
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|..|.+.+..++.+. .-+..||..|+ .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 468999999988655433 45889999986 49999998864
No 120
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.20 E-value=1.4 Score=32.30 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=30.3
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHh----hcCCCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWL----ELHNSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl----~~~~sCP~CR~~ 240 (352)
...| ||......+...+.- .|...||..|+.--. ..+-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4568 798776544334443 399999999986432 224579999654
No 121
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=65.46 E-value=1.5 Score=35.92 Aligned_cols=46 Identities=17% Similarity=0.407 Sum_probs=31.4
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhcCCCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLELHNSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~sCP~CR~ 239 (352)
...|.+|...|..-..-... .||.+||..|..........|-.|..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 36899999999764333333 49999999998877666677888854
No 122
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=64.95 E-value=5.7 Score=30.45 Aligned_cols=29 Identities=21% Similarity=0.661 Sum_probs=22.3
Q ss_pred CCceeeecCCcccccCCCCCCCCcCCCCCCCceE
Q 018689 21 PQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIE 54 (352)
Q Consensus 21 ~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvE 54 (352)
.....|+.|.+.|-+. ..+.| .|+.-|=-
T Consensus 23 ~~~~rC~~C~kkvgl~----~~f~C-rCg~~FC~ 51 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA----TSFEC-RCGNNFCA 51 (85)
T ss_dssp CCCCBCSSSCCBCSSS----SCEEC-TTCCEECT
T ss_pred ccCccchhhCCeeccc----CCeEc-CCCCEecc
Confidence 4468999999998764 24899 59988854
No 123
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.03 E-value=4.8 Score=29.73 Aligned_cols=39 Identities=26% Similarity=0.624 Sum_probs=30.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|..|.+.+..++.+.. -+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 4689999999876654444 4789999986 4899988885
No 124
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=63.30 E-value=7.5 Score=27.42 Aligned_cols=38 Identities=24% Similarity=0.643 Sum_probs=25.9
Q ss_pred CCCCCCceeeecCCcccccCC---------CCCCCCcCCCCCCCceE
Q 018689 17 PQQEPQMYFCHQCNRTVRVTP---------SPSSDLVCPSCNGGFIE 54 (352)
Q Consensus 17 ~~~~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~gFvE 54 (352)
.......|-|..|.+...... .....+.|+.|+..|..
T Consensus 12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 345567899999988753211 11345889999988864
No 125
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.08 E-value=5.6 Score=29.41 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=30.8
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+...+.+. .-+..||..|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 468999999886654443 35788999996 488998888643
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=61.48 E-value=2.4 Score=30.97 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=28.6
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhh---cCCCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLE---LHNSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~---~~~sCP~CR~ 239 (352)
...| ||..... +...+.- .|...||..|+.--.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4678 9987654 3323333 4999999999864321 2346888864
No 127
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=61.43 E-value=3.2 Score=30.38 Aligned_cols=44 Identities=25% Similarity=0.622 Sum_probs=27.0
Q ss_pred ccccccccccccCCceEc-ccCceecccchHHHhhc-----CCCCCccCCC
Q 018689 196 QCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL-----HNSCPVCRYE 240 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~-----~~sCP~CR~~ 240 (352)
.|.||...-. +..+..- .|...||..|+.+=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4567764321 2223333 38999999999976543 2269999753
No 128
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.19 E-value=1.7 Score=32.11 Aligned_cols=46 Identities=20% Similarity=0.410 Sum_probs=29.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHh---------hcCCCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWL---------ELHNSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl---------~~~~sCP~CR~~ 240 (352)
...| ||...+..+.-+..-.|...||..|+.--. ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3456 898876532222222499999999985322 135689999753
No 129
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.67 E-value=4.1 Score=29.85 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=22.9
Q ss_pred CCCceeeecCCcccccCCCCCCCCcCCCCCCCceE
Q 018689 20 EPQMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIE 54 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvE 54 (352)
......|..|.+.|-|.. ..-+.| +|+.-|=-
T Consensus 12 ~~~~~rC~~C~kk~gL~~--~egf~C-rCg~~FC~ 43 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQ--QELGSC-RCGYVFCM 43 (67)
T ss_dssp CSCTTBCSSSCCBCCHHH--HHHHCC-SSSCCCCT
T ss_pred CccCCcchhhCCeecccc--cCceEe-cCCCEehh
Confidence 345679999999987641 002789 99998853
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.47 E-value=17 Score=32.49 Aligned_cols=49 Identities=20% Similarity=0.531 Sum_probs=33.2
Q ss_pred CCCccccccccccccCCceEcc-cCceecccchHHHhh--------cCCCCCccCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLE--------LHNSCPVCRYEL 241 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~--------~~~sCP~CR~~l 241 (352)
+...|.+|...|..-..-.... ||++||..|...++. ....|-.|-..|
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 3569999999998654434444 999999999876532 123576664433
No 131
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=60.01 E-value=3.7 Score=37.12 Aligned_cols=44 Identities=25% Similarity=0.592 Sum_probs=25.6
Q ss_pred CccccccccccccCCceEc-ccCceecccchHHHhhc-----CCCCCccCC
Q 018689 195 SQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL-----HNSCPVCRY 239 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~-----~~sCP~CR~ 239 (352)
..|.||...-.. ..+... .|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888764222 223333 49999999999976643 125999965
No 132
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.89 E-value=2 Score=32.05 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=29.9
Q ss_pred CCccccccccccccCCceEc--ccCceecccchHHHhh---------cCCCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM--PCKHIYHPDCIMPWLE---------LHNSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l--pC~H~FH~~Ci~~Wl~---------~~~sCP~CR~~l 241 (352)
...| ||......+.-+..- .|...||..|+.---. .+-.||.|+...
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4667 898874443223333 5999999999853211 245799997643
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.39 E-value=7.2 Score=29.37 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=26.6
Q ss_pred CCCccccccccccccCCceEcc-cCceecccchHHH
Q 018689 193 DSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPW 227 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~W 227 (352)
+...|.+|...|..-..-..-. ||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3568999999998654333333 9999999998765
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.56 E-value=6.6 Score=30.05 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=32.3
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhc------CCCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL------HNSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~------~~sCP~CR~~ 240 (352)
...|.+|...|..-...... .||++||..|...++.. ...|-.|-..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~ 73 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYET 73 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHH
Confidence 46899999999765433333 49999999998876422 2346666443
No 135
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.51 E-value=1.8 Score=37.07 Aligned_cols=45 Identities=22% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHh-----hcCCCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWL-----ELHNSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl-----~~~~sCP~CR~ 239 (352)
...| ||......+...+.. .|...||..|+.--. ...-.||.|+.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 4678 998876544434444 399999999985322 12447999975
No 136
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=58.26 E-value=5.5 Score=33.39 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=30.8
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhhc-----------CCCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL-----------HNSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~-----------~~sCP~CR~~ 240 (352)
+..|.||.+. + ++... .|-..||..||.+-|.. .=.||+|+..
T Consensus 63 ~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 5789999875 2 23333 49999999999976631 2269999753
No 137
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=58.07 E-value=7.6 Score=29.67 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=31.7
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHhh-------cCCCCCccCCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLE-------LHNSCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~-------~~~sCP~CR~~ 240 (352)
...|.+|...|..-..-... .||++||..|....+. ....|-.|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~ 63 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTI 63 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHH
Confidence 46899999999764433333 3999999999876532 12356666443
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.89 E-value=6.5 Score=32.04 Aligned_cols=34 Identities=18% Similarity=0.563 Sum_probs=25.8
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHH
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPW 227 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~W 227 (352)
...|.+|...|..-..-... .||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 46899999999864433334 39999999997654
No 139
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.74 E-value=8 Score=28.99 Aligned_cols=35 Identities=23% Similarity=0.651 Sum_probs=26.2
Q ss_pred CCccccccccccccCCceEcc-cCceecccchHHHh
Q 018689 194 SSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWL 228 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl 228 (352)
...|.+|...|..-..-..-. ||++|+..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 468999999998644333333 99999999987643
No 140
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.58 E-value=8.6 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.454 Sum_probs=25.1
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHH
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPW 227 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~W 227 (352)
...|.+|...|..-..-..- .||.+|+..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 46899999999764333333 39999999996653
No 141
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.82 E-value=13 Score=26.22 Aligned_cols=40 Identities=25% Similarity=0.635 Sum_probs=29.0
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|..|.+.+...+.. +..=+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcCC
Confidence 46899999887653322 2335789999986 4899998884
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.24 E-value=2.2 Score=33.86 Aligned_cols=44 Identities=30% Similarity=0.531 Sum_probs=28.0
Q ss_pred ccccccccccccCCceEc-ccCceecccchHHHhhc----CCCCCccCCC
Q 018689 196 QCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLEL----HNSCPVCRYE 240 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~----~~sCP~CR~~ 240 (352)
.|.||...-.. ..+..- .|...||..|+.+=|.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57788765332 122222 38999999999876543 2258888553
No 143
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=56.16 E-value=3.9 Score=24.98 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=20.8
Q ss_pred CccccccccccccCCceEcccCceecccch
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCI 224 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci 224 (352)
..|+.|-..+-..+++. .=|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 57999998887654443 34789999984
No 144
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.08 E-value=13 Score=26.38 Aligned_cols=40 Identities=28% Similarity=0.537 Sum_probs=29.8
Q ss_pred CCccccccccccc--cCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFEL--NEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~--~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|..|.+.+.. .+.+ +..-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 4689999998875 2233 3336889999996 5899998885
No 145
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.67 E-value=8.5 Score=28.16 Aligned_cols=33 Identities=15% Similarity=0.471 Sum_probs=24.8
Q ss_pred CccccccccccccCCceEc-ccCceecccchHHH
Q 018689 195 SQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPW 227 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~W 227 (352)
..|.+|...|..-..-..- .||++|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5899999999764333333 39999999997654
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.54 E-value=7.4 Score=34.51 Aligned_cols=36 Identities=17% Similarity=0.529 Sum_probs=27.1
Q ss_pred CCCccccccccccccCCceEcc-cCceecccchHHHh
Q 018689 193 DSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWL 228 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl 228 (352)
+...|.+|...|..-..-.... ||++||..|.....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 3579999999997654444444 99999999977653
No 147
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.97 E-value=12 Score=27.25 Aligned_cols=42 Identities=21% Similarity=0.546 Sum_probs=31.2
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+...+.+ +..=+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 36899999998765543 2335789999986 489999888653
No 148
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=54.40 E-value=9.1 Score=28.87 Aligned_cols=33 Identities=18% Similarity=0.522 Sum_probs=26.0
Q ss_pred CceeeecCCcccccCCCCCCCCcCCCCCCCceEEccC
Q 018689 22 QMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEELET 58 (352)
Q Consensus 22 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~~ 58 (352)
-.+.||.|-..... ..-.+||.|++.=|..+.-
T Consensus 14 ~iLrC~aCf~~t~~----~~k~FCp~CGn~TL~Rvsv 46 (79)
T 2con_A 14 YILRCHGCFKTTSD----MNRVFCGHCGNKTLKKVSV 46 (79)
T ss_dssp EEEECSSSCCEESC----SSCCSCSSSCCSCCEEEEC
T ss_pred eeeEecccceECCC----cccccccccCcccceEEEE
Confidence 45789999998632 3569999999998888754
No 149
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.01 E-value=11 Score=30.00 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=28.4
Q ss_pred CCCccccccccccccCCceEc---ccCceecccchHHHhhcC----CCCCccCCCCC
Q 018689 193 DSSQCAVCKDSFELNEEARQM---PCKHIYHPDCIMPWLELH----NSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~l---pC~H~FH~~Ci~~Wl~~~----~sCP~CR~~l~ 242 (352)
++..|.||.+. + +++.- .|-..||..|+. |... -.||.|+-.+.
T Consensus 14 ~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 14 HEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 45789999842 2 23333 377999999997 4332 24887765544
No 150
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.49 E-value=12 Score=26.48 Aligned_cols=41 Identities=22% Similarity=0.456 Sum_probs=30.1
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
..|..|.+.+...+.+ +..-+..||..|+ .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccCCC
Confidence 5899999998765433 2235789999886 488998888643
No 151
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.05 E-value=9.3 Score=27.04 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=30.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+...+.+ +..-+..||..|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCCC
Confidence 36899999988764332 3346889999886 488998888643
No 152
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.11 E-value=10 Score=30.11 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=22.6
Q ss_pred Cccccccccccc------cCCceEc-ccCceecccchHHHh
Q 018689 195 SQCAVCKDSFEL------NEEARQM-PCKHIYHPDCIMPWL 228 (352)
Q Consensus 195 ~~C~IC~e~~~~------~~~~~~l-pC~H~FH~~Ci~~Wl 228 (352)
..|.||+..-.. .++++.- .|+..||..||..++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 469999875421 1223333 499999999998763
No 153
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.44 E-value=4.2 Score=29.02 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=28.5
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCcc
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVC 237 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~C 237 (352)
..|-.|...|......+.-.|++.|+.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998542212223399999999944322445579988
No 154
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.15 E-value=11 Score=28.17 Aligned_cols=39 Identities=18% Similarity=0.495 Sum_probs=29.5
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|..|.+.+.. + .+..-+..||..|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRG-P--FLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCS-C--EEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEecc-e--EEEECCccccccCC--------ccCCCCCCCCC
Confidence 4689999998852 2 33346899999986 49999988864
No 155
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=50.79 E-value=13 Score=28.30 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=28.5
Q ss_pred CCccccccccccccCCceEcc--cCceecccchHHHhhc
Q 018689 194 SSQCAVCKDSFELNEEARQMP--CKHIYHPDCIMPWLEL 230 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lp--C~H~FH~~Ci~~Wl~~ 230 (352)
...|.+|.+.+++.. -++.| =.|.||..|-+..+++
T Consensus 15 ~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 578999999998754 33444 4899999999998865
No 156
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.72 E-value=7.7 Score=28.35 Aligned_cols=41 Identities=27% Similarity=0.589 Sum_probs=30.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+..++. +..-+..||..|+. |-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF~--------C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCFL--------CMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSEE--------CSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccCc--------cCCCCCCCCCC
Confidence 4689999999876553 33468899999964 88898887543
No 157
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=49.23 E-value=12 Score=29.55 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=22.0
Q ss_pred CCcccccccccc-----ccCCceEc-ccCceecccchHH
Q 018689 194 SSQCAVCKDSFE-----LNEEARQM-PCKHIYHPDCIMP 226 (352)
Q Consensus 194 ~~~C~IC~e~~~-----~~~~~~~l-pC~H~FH~~Ci~~ 226 (352)
...|.+|+..-. ..++++.- .|+..||..||..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 468999987531 12233333 4999999999963
No 158
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.18 E-value=16 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.502 Sum_probs=30.2
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+.. .. +..-+..||..|+ .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~--~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG--AV-VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS--CC-EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc--cE-EEECCceECccCC--------EecCCCCCCCCC
Confidence 4689999998875 22 3346889999996 499999888643
No 159
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.09 E-value=10 Score=30.15 Aligned_cols=32 Identities=25% Similarity=0.599 Sum_probs=23.7
Q ss_pred CceeeecCCcccccCCCCCCCCcCCCCCCCceEE
Q 018689 22 QMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFIEE 55 (352)
Q Consensus 22 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 55 (352)
..|-|-.|.-..+ ........||.|.|..||+
T Consensus 66 ~p~~C~~CG~~F~--~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFK--AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCC--CCSSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeec--ccCCCCCCCcCCCCCccCC
Confidence 4588999987752 2223568999999999886
No 160
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=47.86 E-value=4.8 Score=29.60 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=29.6
Q ss_pred CCCccccccccc-cccCCceEcc-cCceecccchHHHhh--cCCCCCccCC
Q 018689 193 DSSQCAVCKDSF-ELNEEARQMP-CKHIYHPDCIMPWLE--LHNSCPVCRY 239 (352)
Q Consensus 193 ~~~~C~IC~e~~-~~~~~~~~lp-C~H~FH~~Ci~~Wl~--~~~sCP~CR~ 239 (352)
+...|.||.+.- ...+.++.-- |.-.||..|+..-+. ..=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 357899998763 2223333333 999999999976431 1225887754
No 161
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.33 E-value=9.7 Score=26.98 Aligned_cols=37 Identities=24% Similarity=0.605 Sum_probs=26.5
Q ss_pred CCccccccccccccCCceEc---c--cCceecccchHHHhhc
Q 018689 194 SSQCAVCKDSFELNEEARQM---P--CKHIYHPDCIMPWLEL 230 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l---p--C~H~FH~~Ci~~Wl~~ 230 (352)
...|+-|.-.++..+....| . |++.|+..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46799998888776543333 2 7888999999888643
No 162
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.31 E-value=12 Score=27.24 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|..|.+.+.. . .+..-+..||..|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999998875 2 33446889999996 4889988773
No 163
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.05 E-value=12 Score=30.85 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=30.7
Q ss_pred CCCcccccccccc-ccC-CceEcccCceecccchHHHhhc----CCCCCccCC
Q 018689 193 DSSQCAVCKDSFE-LNE-EARQMPCKHIYHPDCIMPWLEL----HNSCPVCRY 239 (352)
Q Consensus 193 ~~~~C~IC~e~~~-~~~-~~~~lpC~H~FH~~Ci~~Wl~~----~~sCP~CR~ 239 (352)
+...|.+|...|. ... .....-|.|.+|..|-..-... .-.|-+|++
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3589999999994 322 3444459999999996532111 114888865
No 164
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.89 E-value=15 Score=25.89 Aligned_cols=40 Identities=25% Similarity=0.549 Sum_probs=29.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+.. .. +..-+..||..|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV--IKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CC--EEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eE--EEECcccccccCC--------EeCCCCCcCCCC
Confidence 4689999998863 22 3335789999996 489998888653
No 165
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=46.87 E-value=4.1 Score=30.85 Aligned_cols=36 Identities=28% Similarity=0.664 Sum_probs=23.9
Q ss_pred cccccccccc--cCCceEcc-cCceecccchHHHhhcCC
Q 018689 197 CAVCKDSFEL--NEEARQMP-CKHIYHPDCIMPWLELHN 232 (352)
Q Consensus 197 C~IC~e~~~~--~~~~~~lp-C~H~FH~~Ci~~Wl~~~~ 232 (352)
|+-|-..+.. +...+..+ |++.||..|-.+|=+.|.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHR 66 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCC
Confidence 6656554322 22345666 999999999999955554
No 166
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.68 E-value=12 Score=26.95 Aligned_cols=40 Identities=20% Similarity=0.460 Sum_probs=28.5
Q ss_pred Cccccccccccc-cCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 195 SQCAVCKDSFEL-NEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 195 ~~C~IC~e~~~~-~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
..|..|.+.+.. ++...+..-+..||..|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 579999998874 111223346888999886 4889988875
No 167
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.44 E-value=15 Score=26.28 Aligned_cols=41 Identities=29% Similarity=0.705 Sum_probs=30.0
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|..|.+.+...+.++ ..-+..||..|+ .|-.|+..|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCC
Confidence 468999999987544432 235789999986 48889888754
No 168
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=46.27 E-value=15 Score=25.73 Aligned_cols=41 Identities=29% Similarity=0.728 Sum_probs=30.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|..|...+...+.++. .=+..||..|+ .|-.|...|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCC
Confidence 4689999999876554322 35778999996 58899888754
No 169
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.19 E-value=11 Score=30.13 Aligned_cols=39 Identities=23% Similarity=0.629 Sum_probs=27.8
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
..|..|...+...+.++ ..-++.||..|+ .|-.|.+.|.
T Consensus 9 ~~C~~C~~~I~~~e~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 47 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTM-RVKDKVYHLECF--------KCAACQKHFS 47 (123)
T ss_dssp CCCSSSSCCCCTTCCCC-CCSSCCCCTTTC--------BCTTTCCBCC
T ss_pred CcccCCCCeecCCceEE-EECCcccccccC--------ccccCCCCCC
Confidence 37999999887644332 224788999885 4888888874
No 170
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.65 E-value=19 Score=25.26 Aligned_cols=39 Identities=28% Similarity=0.631 Sum_probs=29.0
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|..|.+.+.. + .+..-+..||..|+ +|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-G--GVTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-S--EEESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc-c--eEEECccccCCCCC--------ccCCCCCcCCc
Confidence 3579999998864 2 23446889999886 48999988853
No 171
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=45.18 E-value=4.5 Score=39.20 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCccccccccccccCCce-EcccCceecccchHHHhh-------cCCCCCccCCCC
Q 018689 194 SSQCAVCKDSFELNEEAR-QMPCKHIYHPDCIMPWLE-------LHNSCPVCRYEL 241 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~-~lpC~H~FH~~Ci~~Wl~-------~~~sCP~CR~~l 241 (352)
...|.+|...|..-.... .-.||++||..|...++. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 568999999987543222 234999999999977642 134677775554
No 172
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=44.58 E-value=20 Score=26.55 Aligned_cols=37 Identities=16% Similarity=0.498 Sum_probs=25.5
Q ss_pred CCCCCceeeecCCcccccCC---------CCCCCCcCCCCCCCceE
Q 018689 18 QQEPQMYFCHQCNRTVRVTP---------SPSSDLVCPSCNGGFIE 54 (352)
Q Consensus 18 ~~~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~gFvE 54 (352)
......|-|..|.+...... .....+.|+.|+..|.-
T Consensus 12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 34567899999998653211 12356899999988854
No 173
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=44.25 E-value=3.5 Score=31.56 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCccccccccc-cccCCceEc-ccCceecccchHHHhh--cCCCCCccCCCCC
Q 018689 193 DSSQCAVCKDSF-ELNEEARQM-PCKHIYHPDCIMPWLE--LHNSCPVCRYELP 242 (352)
Q Consensus 193 ~~~~C~IC~e~~-~~~~~~~~l-pC~H~FH~~Ci~~Wl~--~~~sCP~CR~~l~ 242 (352)
++..|.||...- ...+.++.. .|.-.||..|+..-+. ..=.||.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 357899998753 122233333 3888999999986431 1236999976543
No 174
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=44.12 E-value=3.5 Score=29.45 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=31.8
Q ss_pred CCCCcccccccc-ccccCCceEcccCceecccchHHHhhc-CC---CCCccCC
Q 018689 192 SDSSQCAVCKDS-FELNEEARQMPCKHIYHPDCIMPWLEL-HN---SCPVCRY 239 (352)
Q Consensus 192 ~~~~~C~IC~e~-~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~---sCP~CR~ 239 (352)
.+...|.||+.. |.++-.-...-|.-.|+..|--.|-.+ .+ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 346899999876 444443444458888999998887433 22 4777764
No 175
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.37 E-value=24 Score=22.95 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCceeeecCCccccc----------CCCCCCCCcCCCCCCCce
Q 018689 20 EPQMYFCHQCNRTVRV----------TPSPSSDLVCPSCNGGFI 53 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~----------~~~~~~~~~CP~C~~gFv 53 (352)
....|-|-.|.+.... .-.......|+.|+..|-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 4477999999865311 111245689999999985
No 176
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.07 E-value=17 Score=27.08 Aligned_cols=40 Identities=20% Similarity=0.616 Sum_probs=30.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|..|.+.+...+. +..-+..||..|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCC
Confidence 4689999999876543 3456889999996 48888887764
No 177
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=41.70 E-value=5.9 Score=31.63 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=28.4
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcC----CCCCccCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELH----NSCPVCRYE 240 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~----~sCP~CR~~ 240 (352)
..|.||...-..+.-+.--.|...||..|+.+=|... =.||.|+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 3688887653222222222489999999999755432 258888543
No 178
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=41.25 E-value=5.8 Score=27.97 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=24.8
Q ss_pred CCccccccccccccCCceEc-c--cC-ceecccchHHHhhc----CCCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-P--CK-HIYHPDCIMPWLEL----HNSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-p--C~-H~FH~~Ci~~Wl~~----~~sCP~CR~ 239 (352)
..-| ||..... ++ .+.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 9987642 22 2221 3 55 699999997 332 336998864
No 179
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.64 E-value=5.7 Score=28.05 Aligned_cols=41 Identities=24% Similarity=0.569 Sum_probs=24.3
Q ss_pred CCccccccccccccCCceEc-c--cC-ceecccchHHHhhc----CCCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-P--CK-HIYHPDCIMPWLEL----HNSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-p--C~-H~FH~~Ci~~Wl~~----~~sCP~CR~ 239 (352)
..-| ||..... + ..+.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8987532 2 22221 2 44 689999997 432 236888854
No 180
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.60 E-value=15 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.616 Sum_probs=23.7
Q ss_pred CCCccccccccccccCCceEccc-CceecccchHH
Q 018689 193 DSSQCAVCKDSFELNEEARQMPC-KHIYHPDCIMP 226 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~lpC-~H~FH~~Ci~~ 226 (352)
+..-|.||.++ ..++.+.| +-+||..|...
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 35689999887 24788889 89999999555
No 181
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=40.19 E-value=5.5 Score=27.66 Aligned_cols=26 Identities=38% Similarity=0.793 Sum_probs=19.6
Q ss_pred eeecCCcccccCCCC--------------CCCCcCCCCCC
Q 018689 25 FCHQCNRTVRVTPSP--------------SSDLVCPSCNG 50 (352)
Q Consensus 25 wCh~C~r~V~~~~~~--------------~~~~~CP~C~~ 50 (352)
.|+.|++.||+.-.. +-.++||.|..
T Consensus 10 ~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 10 SCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp ECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 599999999875321 34799999964
No 182
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.16 E-value=6.4 Score=29.40 Aligned_cols=14 Identities=14% Similarity=0.603 Sum_probs=13.1
Q ss_pred ccCceecccchHHH
Q 018689 214 PCKHIYHPDCIMPW 227 (352)
Q Consensus 214 pC~H~FH~~Ci~~W 227 (352)
.|+|.|+..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999999
No 183
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.99 E-value=23 Score=27.31 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=34.4
Q ss_pred CCccccccccccccCC--c--eEcccCceecccchHHHh-hcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEE--A--RQMPCKHIYHPDCIMPWL-ELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~--~--~~lpC~H~FH~~Ci~~Wl-~~~~sCP~CR~~l~ 242 (352)
...|.||-+.+..... + ...-|+--.|+.|..-=. +-+..||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4689999999755432 2 222377788889976544 34678999998875
No 184
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.72 E-value=24 Score=24.64 Aligned_cols=38 Identities=26% Similarity=0.584 Sum_probs=28.3
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|..|.+.+.. +. +..-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCC
Confidence 3689999998864 32 2335789999886 4899998885
No 185
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.55 E-value=21 Score=25.91 Aligned_cols=39 Identities=36% Similarity=0.823 Sum_probs=28.8
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
..|..|.+.+.. .. +..-+..||..|+ .|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EV--VSALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCS-CC--EEETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEecc-ce--EEECCceeCccCC--------ccccCCCCCCCC
Confidence 589999998873 32 2336889999986 488998888643
No 186
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.74 E-value=19 Score=24.95 Aligned_cols=39 Identities=15% Similarity=0.414 Sum_probs=29.1
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|+.|.+.+. ++ .+..-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 357999999887 32 34446889999885 49999988864
No 187
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.27 E-value=18 Score=29.69 Aligned_cols=42 Identities=21% Similarity=0.542 Sum_probs=28.8
Q ss_pred CCccccccccccccCCceEc-ccCceecccchHHHh------hc-----CCCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWL------EL-----HNSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl------~~-----~~sCP~CR~ 239 (352)
+..|.||.+. .++..- .|-..||..||.+-| +. .=.|++|+.
T Consensus 57 ~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4679999865 223333 389999999999753 21 136999955
No 188
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=38.14 E-value=15 Score=29.42 Aligned_cols=39 Identities=21% Similarity=0.513 Sum_probs=29.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|..|.+.+... .++..-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~--~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADR--FLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSS--SEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCc--EEEEeCCcEEccccc--------CcCcCCCccc
Confidence 46899999988753 223346889999995 4999988874
No 189
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.69 E-value=29 Score=24.86 Aligned_cols=39 Identities=21% Similarity=0.575 Sum_probs=29.1
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|..|.+.+... .+..=+..||..|+ +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCCC
Confidence 36799999988652 23346889999886 48999988853
No 190
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=36.59 E-value=29 Score=24.69 Aligned_cols=41 Identities=22% Similarity=0.488 Sum_probs=29.3
Q ss_pred CCccccccccccc---cCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFEL---NEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~---~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
...|+.|...+.. ... .+..=+..||..|+ +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCC
Confidence 3679999998874 222 23335789999985 49999988853
No 191
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.53 E-value=15 Score=25.49 Aligned_cols=37 Identities=19% Similarity=0.499 Sum_probs=25.3
Q ss_pred CCCCCceeeecCCcccccCC---------CCCCCCcCCCCCCCceE
Q 018689 18 QQEPQMYFCHQCNRTVRVTP---------SPSSDLVCPSCNGGFIE 54 (352)
Q Consensus 18 ~~~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~gFvE 54 (352)
......|-|..|.+...... .......|+.|+..|..
T Consensus 12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 44567899999998753211 12345899999988864
No 192
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.34 E-value=35 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.564 Sum_probs=19.3
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 241 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l 241 (352)
..|..|.+.+..+...+ ..=+..||..|+ +|-.|+..|
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L 43 (101)
T 2cup_A 6 SGCVECRKPIGADSKEV-HYKNRFWHDTCF--------RCAKCLHPL 43 (101)
T ss_dssp CBCSSSCCBCCSSSCEE-EETTEEEETTTC--------CCSSSCCCT
T ss_pred CcCcccCCcccCCceEE-EECccChhhcCC--------cccccCCCC
Confidence 45666666665322221 123556666664 355665555
No 193
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.22 E-value=9.7 Score=30.29 Aligned_cols=28 Identities=21% Similarity=0.601 Sum_probs=18.1
Q ss_pred ceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 210 ARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 210 ~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
.+...||+.|. .=+.....||.|+.+-.
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 34455899981 12334568999988654
No 194
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.69 E-value=23 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.565 Sum_probs=27.9
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
..|..|.+.+. +.. +..-+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--BCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceE--EEECCceeccccC--------CccCCCCccCC
Confidence 57999999887 322 2335788999886 48999888853
No 195
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.69 E-value=26 Score=25.39 Aligned_cols=40 Identities=28% Similarity=0.603 Sum_probs=29.7
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+. +.. +..-+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC--------EeCCCCCccCCC
Confidence 468999999887 332 2346888999885 599999988643
No 196
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=34.44 E-value=9.6 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=24.6
Q ss_pred cccccccccCCceEc-ccCceecccchHHHh---hcCCCCCccCC
Q 018689 199 VCKDSFELNEEARQM-PCKHIYHPDCIMPWL---ELHNSCPVCRY 239 (352)
Q Consensus 199 IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl---~~~~sCP~CR~ 239 (352)
||..... +...+.- .|...||..|+.--. ..+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543 2233333 489999999986432 23447888864
No 197
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.78 E-value=26 Score=25.02 Aligned_cols=37 Identities=24% Similarity=0.534 Sum_probs=26.6
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
..|.-|...+.. . .+..-+..||..|+ +|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C--CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-e--eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 578889888764 2 22346788998885 4888888876
No 198
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.05 E-value=23 Score=24.43 Aligned_cols=35 Identities=17% Similarity=0.496 Sum_probs=24.0
Q ss_pred CCCceeeecCCcccccCC---------CCCCCCcCCCCCCCceE
Q 018689 20 EPQMYFCHQCNRTVRVTP---------SPSSDLVCPSCNGGFIE 54 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~gFvE 54 (352)
....|-|..|.+...... .....+.|+.|+..|..
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 447799999987643211 12356899999988864
No 199
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=32.66 E-value=9.3 Score=30.09 Aligned_cols=12 Identities=17% Similarity=0.803 Sum_probs=10.6
Q ss_pred ecccchHHHhhc
Q 018689 219 YHPDCIMPWLEL 230 (352)
Q Consensus 219 FH~~Ci~~Wl~~ 230 (352)
||+.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 200
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.61 E-value=28 Score=25.16 Aligned_cols=38 Identities=29% Similarity=0.656 Sum_probs=28.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
...|..|...+.. . .+..-+..||..|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-R--ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-C--CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-e--eEEECCccccHHhc--------CcccCCCccC
Confidence 4689999998873 2 23346789999885 4999988885
No 201
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.51 E-value=9.4 Score=30.02 Aligned_cols=11 Identities=27% Similarity=1.038 Sum_probs=10.3
Q ss_pred ecccchHHHhh
Q 018689 219 YHPDCIMPWLE 229 (352)
Q Consensus 219 FH~~Ci~~Wl~ 229 (352)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 202
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.51 E-value=8.4 Score=30.24 Aligned_cols=40 Identities=23% Similarity=0.560 Sum_probs=27.6
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
..|++|..+++... ++.+|..|-.. +.....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 68999998876532 34456677554 445567999998874
No 203
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=32.18 E-value=17 Score=24.67 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCceeeecCCcccccC------CCCCCCCcCCCCCCCceEEccC
Q 018689 21 PQMYFCHQCNRTVRVT------PSPSSDLVCPSCNGGFIEELET 58 (352)
Q Consensus 21 ~~~ywCh~C~r~V~~~------~~~~~~~~CP~C~~gFvEEi~~ 58 (352)
...|-|..|....... -.....+.|+.|+..|...-..
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTC
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccc
Confidence 3579999999853211 1123458999999999876543
No 204
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=32.04 E-value=5.2 Score=28.23 Aligned_cols=30 Identities=33% Similarity=0.813 Sum_probs=20.8
Q ss_pred CCCce----eeecCCcccccCCCC--------------CCCCcCCCCC
Q 018689 20 EPQMY----FCHQCNRTVRVTPSP--------------SSDLVCPSCN 49 (352)
Q Consensus 20 ~~~~y----wCh~C~r~V~~~~~~--------------~~~~~CP~C~ 49 (352)
+...| .|+.|.+.||+.-.. +-.++||.|.
T Consensus 6 ~~~~Y~I~t~C~~C~~~lRl~V~at~~~IR~lqqLLl~~L~lvCp~Ca 53 (56)
T 2ewl_A 6 EPQRHKILCVCCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVCPWCA 53 (56)
T ss_dssp CSSEEEEEEEBTTTCCEEEEEEECCHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred cCcCEEEEEECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcccc
Confidence 44466 499999999975421 3368898884
No 205
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=31.05 E-value=8.8 Score=27.66 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=26.3
Q ss_pred CccccccccccccCCceEc---ccCceecccchHHHh---h-----cCCCCCccCC
Q 018689 195 SQCAVCKDSFELNEEARQM---PCKHIYHPDCIMPWL---E-----LHNSCPVCRY 239 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~l---pC~H~FH~~Ci~~Wl---~-----~~~sCP~CR~ 239 (352)
..| ||......+ ..+.. .|...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 796654443 34444 288999999984210 1 1356999974
No 206
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.94 E-value=30 Score=24.97 Aligned_cols=40 Identities=20% Similarity=0.526 Sum_probs=28.0
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
..|..|...+...+.++ ..=+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-FYEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-CCSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEE-EeCCccccccCC--------eecCCCCccCC
Confidence 57999999887433322 224788999885 48889888863
No 207
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.74 E-value=33 Score=24.59 Aligned_cols=38 Identities=21% Similarity=0.581 Sum_probs=28.4
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
..|..|...+.. +.+ ..-+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--SAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCE--EETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeE--EECCCeEecCcC--------ChhhCCCCCCC
Confidence 579999998875 222 335788999885 48999988864
No 208
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=30.48 E-value=20 Score=27.56 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=24.6
Q ss_pred CCCccccccccccccCCceEc-ccC---ceecccchHHHh--hcCCCCCc-cC
Q 018689 193 DSSQCAVCKDSFELNEEARQM-PCK---HIYHPDCIMPWL--ELHNSCPV-CR 238 (352)
Q Consensus 193 ~~~~C~IC~e~~~~~~~~~~l-pC~---H~FH~~Ci~~Wl--~~~~sCP~-CR 238 (352)
+..-| ||..... + ..+.. .|. ..||..||.--- ...-.||. |+
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhc
Confidence 34567 9987432 2 22222 244 689999986211 12346999 96
No 209
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.89 E-value=30 Score=27.31 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=0.0
Q ss_pred cCCCCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCC
Q 018689 191 SSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 241 (352)
Q Consensus 191 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l 241 (352)
+.....|.-|-+.+.....+..+ +..||..|+. |-.|+..|
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~a~--~~~wH~~CF~--------C~~C~~~L 42 (122)
T 1m3v_A 2 SLSWKRCAGCGGKIADRFLLYAM--DSYWHSRCLK--------CSSCQAQL 42 (122)
T ss_dssp CSCCCCBSSSSSCCCSSCCEEET--TEEECHHHHC--------CSSSCCCT
T ss_pred CCCCCCCcccCCEeCCcEEEEEC--CceeHhhCCC--------cCCCCCcc
No 210
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=29.81 E-value=18 Score=24.14 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=23.5
Q ss_pred CceeeecCCc-ccccCCCCCCCCcCCCCCCCceEEc
Q 018689 22 QMYFCHQCNR-TVRVTPSPSSDLVCPSCNGGFIEEL 56 (352)
Q Consensus 22 ~~ywCh~C~r-~V~~~~~~~~~~~CP~C~~gFvEEi 56 (352)
..+-|-.|.. .+... ....+++|+.|+--|-|++
T Consensus 4 ~~~~CP~C~~~~l~~d-~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 4 KQKVCPACESAELIYD-PERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp SCCSCTTTSCCCEEEE-TTTTEEEESSSCCBCCCCC
T ss_pred ccEeCcCCCCcceEEc-CCCCeEECcccCCcccccc
Confidence 4678999977 54332 2347899999987776554
No 211
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.64 E-value=25 Score=29.64 Aligned_cols=46 Identities=20% Similarity=0.494 Sum_probs=32.0
Q ss_pred CCccccccccccc--cCCceEcccCceecccchHHHhhcCC--CCCccCCC
Q 018689 194 SSQCAVCKDSFEL--NEEARQMPCKHIYHPDCIMPWLELHN--SCPVCRYE 240 (352)
Q Consensus 194 ~~~C~IC~e~~~~--~~~~~~lpC~H~FH~~Ci~~Wl~~~~--sCP~CR~~ 240 (352)
...|.+|...|.. +.......|.|.+|..|-. |+.... .|-+|++.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5799999998743 3445555699999999973 543322 48888653
No 212
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=29.57 E-value=17 Score=28.82 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=12.3
Q ss_pred CCCceeeecCCcccc
Q 018689 20 EPQMYFCHQCNRTVR 34 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~ 34 (352)
++.+.|||.|+..|.
T Consensus 71 ~~~~vwCy~cd~~V~ 85 (109)
T 3c5k_A 71 IDLSAWCYYCQAYVH 85 (109)
T ss_dssp TTCCEEETTTTEEBC
T ss_pred CCCCEEECCCCCEEe
Confidence 345799999999984
No 213
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.51 E-value=17 Score=26.42 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.0
Q ss_pred hHHHhhcCCCCCccCCCCCC
Q 018689 224 IMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 224 i~~Wl~~~~sCP~CR~~l~~ 243 (352)
+++||..--.||+|+.+|..
T Consensus 3 md~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE
T ss_pred CCHHHHHHhCCCCCCCcCeE
Confidence 46788888889999998753
No 214
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.48 E-value=18 Score=26.47 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=14.6
Q ss_pred hHHHhhcCCCCCccCCCCCC
Q 018689 224 IMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 224 i~~Wl~~~~sCP~CR~~l~~ 243 (352)
+++||...-.||+|+.+|..
T Consensus 1 md~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKL 20 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEE
T ss_pred CChHHHhheeCCCCCCcCeE
Confidence 35677777889999988753
No 215
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=29.45 E-value=12 Score=28.26 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=14.4
Q ss_pred CCCCcCCCCCCCceEEc
Q 018689 40 SSDLVCPSCNGGFIEEL 56 (352)
Q Consensus 40 ~~~~~CP~C~~gFvEEi 56 (352)
...+.||||+--|+.+-
T Consensus 51 ~g~~~CpYCg~~f~l~~ 67 (80)
T 2jvm_A 51 TGFVECGYCDRRYIHES 67 (80)
T ss_dssp TCEEECSSSSCEEEEHH
T ss_pred CCeEECCCCCCEEEecC
Confidence 46799999999999764
No 216
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.00 E-value=10 Score=22.86 Aligned_cols=13 Identities=38% Similarity=1.119 Sum_probs=9.6
Q ss_pred CCCCCccCCCCCC
Q 018689 231 HNSCPVCRYELPT 243 (352)
Q Consensus 231 ~~sCP~CR~~l~~ 243 (352)
+.+||+|+..++.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3469999887764
No 217
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=28.88 E-value=14 Score=29.22 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=26.4
Q ss_pred ccccccccccccCCceEcc-cCceecccchHHHhhc--------CCCCCccCCC
Q 018689 196 QCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLEL--------HNSCPVCRYE 240 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~--------~~sCP~CR~~ 240 (352)
.|..|.........++.-. |...||..|+..-.+. .-.||.|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 4555554444444444444 9999999998754221 1359999753
No 218
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.54 E-value=33 Score=29.30 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=30.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|...+...+.+. .=+..||..|+ .|-.|+..|...
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~~ 155 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSCF--------RCAKCGKSLEST 155 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTTC--------BCTTTCCBCCSS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhcC--------CccccCCCCCCC
Confidence 457999999887655443 34788999885 488998888643
No 219
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.91 E-value=11 Score=23.73 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=5.7
Q ss_pred Ccccccccccc
Q 018689 195 SQCAVCKDSFE 205 (352)
Q Consensus 195 ~~C~IC~e~~~ 205 (352)
..|+||+..+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 45555555543
No 220
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=27.77 E-value=25 Score=26.98 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=15.6
Q ss_pred CCCCcCCCCCCCceEEccC
Q 018689 40 SSDLVCPSCNGGFIEELET 58 (352)
Q Consensus 40 ~~~~~CP~C~~gFvEEi~~ 58 (352)
.....||||+--|+.+=..
T Consensus 46 ~g~~~CpYCg~~y~~~~~~ 64 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPSL 64 (87)
T ss_dssp CCEECCTTTCCEEECCTTS
T ss_pred CCeEECCCCCCEeEcCCCC
Confidence 5789999999999877543
No 221
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=27.55 E-value=19 Score=29.34 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=11.9
Q ss_pred CCceeeecCCcccc
Q 018689 21 PQMYFCHQCNRTVR 34 (352)
Q Consensus 21 ~~~ywCh~C~r~V~ 34 (352)
+.+.|||.|+..|.
T Consensus 94 t~~vwCY~cd~~V~ 107 (126)
T 2i50_A 94 NWSVWCYVCDNEVQ 107 (126)
T ss_dssp TCCEEETTTTEEEC
T ss_pred CCeEEeCCCCcEEE
Confidence 45699999999985
No 222
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=27.13 E-value=11 Score=27.68 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=28.7
Q ss_pred ccccccccccccCCceEc-ccCceecccchHHHhh-----cCCCCCccCCC
Q 018689 196 QCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLE-----LHNSCPVCRYE 240 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~-----~~~sCP~CR~~ 240 (352)
.-.||...+..+...+.- .|.-.||..|+.---. ..-.||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344888766433333333 3999999999864321 24579999754
No 223
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=27.03 E-value=19 Score=27.83 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=12.3
Q ss_pred CCCceeeecCCcccc
Q 018689 20 EPQMYFCHQCNRTVR 34 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~ 34 (352)
++...|||.|+..|-
T Consensus 75 ~~~~vwCy~cdd~V~ 89 (97)
T 2uzg_A 75 TTLRVWCYACSKEVF 89 (97)
T ss_dssp TTTEEEETTTTEEEC
T ss_pred CCCCEEECCCCcEee
Confidence 446899999999984
No 224
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.93 E-value=16 Score=27.65 Aligned_cols=40 Identities=30% Similarity=0.669 Sum_probs=22.7
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
..|++|..++..... +.++..|-... ....-||-|.++|.
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~~-~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKDF-SLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCEE-EEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-------ceECccccccC-CCcccCcchhhHHH
Confidence 578888887765433 33455554432 22236777776663
No 225
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.43 E-value=45 Score=23.00 Aligned_cols=40 Identities=18% Similarity=0.468 Sum_probs=28.7
Q ss_pred CccccccccccccCCceEcccCceec--ccchHHHhhcCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYH--PDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH--~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
..|..|.+.+..++.. +..-+..|| ..|+ +|-.|+..|..
T Consensus 3 ~~C~~C~~~I~~~~~~-v~a~~~~wH~~~~CF--------~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQR-VTYNNFSWHASTECF--------LCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCE-EEETTEEEETTTTTS--------BCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceE-EEECCCccCCCCCCE--------ECCCCCCcCCC
Confidence 4699999988764332 233588999 9885 58899888853
No 226
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.45 E-value=54 Score=27.30 Aligned_cols=40 Identities=28% Similarity=0.714 Sum_probs=26.9
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
..|..|...+...+.+ +..-++.||..|. .|-.|...|..
T Consensus 66 ~~C~~C~~~I~~~~~v-~~a~~~~~H~~CF--------~C~~C~~~L~~ 105 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVV-RRAQDFVYHLHCF--------ACVVCKRQLAT 105 (169)
T ss_dssp CBCTTTCCBCCTTSEE-EEETTEEEEGGGC--------BCTTTCCBCCT
T ss_pred ccccccccccCCCcEE-EEcCCceEeeCCC--------cCCCCCCCCCC
Confidence 4688888777654322 2235788888885 58888887753
No 227
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.22 E-value=30 Score=18.26 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=8.6
Q ss_pred CcCCCCCCCce
Q 018689 43 LVCPSCNGGFI 53 (352)
Q Consensus 43 ~~CP~C~~gFv 53 (352)
..|+.|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 57888988774
No 228
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.84 E-value=14 Score=37.11 Aligned_cols=45 Identities=22% Similarity=0.480 Sum_probs=29.1
Q ss_pred ccccccccccccCCceEc-ccCceecccchHHHhh-----cCCCCCccCCC
Q 018689 196 QCAVCKDSFELNEEARQM-PCKHIYHPDCIMPWLE-----LHNSCPVCRYE 240 (352)
Q Consensus 196 ~C~IC~e~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~-----~~~sCP~CR~~ 240 (352)
..+||...+..+...+.. .|.-.||..|+.---. .+-.||.|+..
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 334898876534444444 3999999999853221 23479999764
No 229
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.38 E-value=17 Score=26.48 Aligned_cols=19 Identities=21% Similarity=0.101 Sum_probs=14.1
Q ss_pred HHHhhcCCCCCccCCCCCC
Q 018689 225 MPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 225 ~~Wl~~~~sCP~CR~~l~~ 243 (352)
++||..--.||+|+.+|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEY 20 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEE
T ss_pred ChHHhhheECCCCCCcCeE
Confidence 4566667789999988753
No 230
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.29 E-value=84 Score=23.87 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCc
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPV 236 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~ 236 (352)
...|.+|...+..- ......|+..||..=- +.....|+.
T Consensus 25 ~~rC~~C~kkvgl~-~~f~CrCg~~FC~~HR---y~e~H~C~f 63 (85)
T 1wff_A 25 MKHCFLCGKKTGLA-TSFECRCGNNFCASHR---YAEAHGCNY 63 (85)
T ss_dssp CCBCSSSCCBCSSS-SCEECTTCCEECTTTC---STGGGTCCS
T ss_pred CccchhhCCeeccc-CCeEcCCCCEecccCC---CccCCCCcc
Confidence 57899998875541 1234459999986431 222335765
No 231
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.20 E-value=15 Score=25.69 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=14.9
Q ss_pred hHHHhhcCCCCCccCCCCCC
Q 018689 224 IMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 224 i~~Wl~~~~sCP~CR~~l~~ 243 (352)
+++||..--.||+|+.+|..
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEE 22 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEE
T ss_pred CCHHHHhheeCCCCCCccee
Confidence 45677777789999998653
No 232
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.79 E-value=55 Score=25.63 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
-..|..|...+... .-...=+..||..|..+- ....|..|.+.|..
T Consensus 30 CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 35677776665431 122234566666665442 24568888777764
No 233
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.77 E-value=46 Score=24.67 Aligned_cols=35 Identities=14% Similarity=0.430 Sum_probs=24.8
Q ss_pred CCCceeeecCCcccccCC---------CCCCCCcCCCCCCCceE
Q 018689 20 EPQMYFCHQCNRTVRVTP---------SPSSDLVCPSCNGGFIE 54 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~gFvE 54 (352)
....|-|-.|.+...... .....+.|+.|+..|..
T Consensus 25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 456799999998654221 12456899999999964
No 234
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.47 E-value=48 Score=24.47 Aligned_cols=31 Identities=19% Similarity=0.537 Sum_probs=23.6
Q ss_pred Cceeeec--CCcccccCCCCCCCCcCC-----CCCCCce
Q 018689 22 QMYFCHQ--CNRTVRVTPSPSSDLVCP-----SCNGGFI 53 (352)
Q Consensus 22 ~~ywCh~--C~r~V~~~~~~~~~~~CP-----~C~~gFv 53 (352)
..-||-. |...|...+ ....+.|| .|+-.|-
T Consensus 24 ~~~~CP~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC 61 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFC 61 (80)
T ss_dssp SSCCCCSSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEE
T ss_pred CcEECCCCCCCcccEECC-CCCcCCCCCCCCCCCCCeec
Confidence 3789998 999886543 34679998 8987773
No 235
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.32 E-value=65 Score=24.93 Aligned_cols=39 Identities=23% Similarity=0.559 Sum_probs=27.5
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
..|..|...+.... .+..-+..||..|+ +|-.|+..|..
T Consensus 4 ~~C~~C~~~I~~~~--~~~a~~~~wH~~CF--------~C~~C~~~L~~ 42 (114)
T 1j2o_A 4 LTCGGCQQNIGDRY--FLKAIDQYWHEDCL--------SCDLCGCRLGE 42 (114)
T ss_dssp BCBSSSCSCBCSSE--EEECSSSEECTTTC--------CCSSSCSCCCC
T ss_pred CCCcCCCCeeCCcE--EEEECchhHHHhcC--------cccccCCchhc
Confidence 57999988876432 23336788998885 48888888753
No 236
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.28 E-value=18 Score=25.67 Aligned_cols=41 Identities=27% Similarity=0.651 Sum_probs=24.7
Q ss_pred CCccccccccccccCCceEc-c--cC-ceecccchHHHhhc----CCCCCccCC
Q 018689 194 SSQCAVCKDSFELNEEARQM-P--CK-HIYHPDCIMPWLEL----HNSCPVCRY 239 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~l-p--C~-H~FH~~Ci~~Wl~~----~~sCP~CR~ 239 (352)
..-| ||.... .+ ..+.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 898753 22 22222 2 44 899999997 322 336999965
No 237
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=22.21 E-value=34 Score=33.12 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=20.1
Q ss_pred CceeeecCCcccccCCCCCCCCcCCCCCCCce
Q 018689 22 QMYFCHQCNRTVRVTPSPSSDLVCPSCNGGFI 53 (352)
Q Consensus 22 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~gFv 53 (352)
-.|+|+.|..+......+.....||+|++.+.
T Consensus 243 ~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~ 274 (392)
T 3axs_A 243 YIQYCFNCMNREVVTDLYKFKEKCPHCGSKFH 274 (392)
T ss_dssp EEEECTTTCCEEEECCGGGCCSBCTTTCSBCE
T ss_pred eEEECCCCCCeEeecCCCCCCCcCCCCCCccc
Confidence 35899999876432211124678999987443
No 238
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.71 E-value=34 Score=18.17 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=9.2
Q ss_pred CcCCCCCCCceE
Q 018689 43 LVCPSCNGGFIE 54 (352)
Q Consensus 43 ~~CP~C~~gFvE 54 (352)
..|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 578889888853
No 239
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.57 E-value=74 Score=19.70 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=20.6
Q ss_pred CCCCceeeecCCcccccCC---------CCCCCCcCCCCCC
Q 018689 19 QEPQMYFCHQCNRTVRVTP---------SPSSDLVCPSCNG 50 (352)
Q Consensus 19 ~~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~ 50 (352)
.....|-|-.|.+...... .......|+.|+.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 3557899999987542111 1234589999973
No 240
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.53 E-value=66 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=21.3
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELP 242 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~ 242 (352)
..|..|.+.+.... ++..-+..||..|+ .|-.|+..|.
T Consensus 61 ~~C~~C~~~I~~~~--~~~a~~~~wH~~CF--------~C~~C~~~L~ 98 (182)
T 2jtn_A 61 PMCAGCDQHILDRF--ILKALDRHWHSKCL--------KCSDCHVPLA 98 (182)
T ss_dssp CBCBTSSSBCCCSE--EEEETTEEECSSTT--------SCTTTCCCCS
T ss_pred CcCccCCCCccCce--eEEecCCeEccccC--------ccCCCCCccC
Confidence 56777776665421 12224666776664 3666666654
No 241
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=21.50 E-value=1e+02 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=25.2
Q ss_pred CceeeecCCcccccCCCCCCCC--cCCCCCCCceEEccC
Q 018689 22 QMYFCHQCNRTVRVTPSPSSDL--VCPSCNGGFIEELET 58 (352)
Q Consensus 22 ~~ywCh~C~r~V~~~~~~~~~~--~CP~C~~gFvEEi~~ 58 (352)
..-+|..|...-.+.. ..+ +||.|++-=...+..
T Consensus 36 v~I~CnDC~~~s~v~~---h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 36 VDILCNDCNGRSTVQF---HILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp EEEEESSSCCEEEEEC---CTTCCCCTTTSCCCEEESCC
T ss_pred eEEECCCCCCCccCCc---eeecccCcCCCCcCeEecCC
Confidence 3579999999865533 344 899999987777654
No 242
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.08 E-value=55 Score=27.84 Aligned_cols=41 Identities=27% Similarity=0.650 Sum_probs=30.0
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
...|..|.+.+..++.+ ..-+..||..|+ .|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~v--~a~g~~wH~~CF--------~C~~C~~~L~~~ 47 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEV--QCEGSSFHKSCF--------LCMVCKKNLDST 47 (192)
T ss_dssp CEECTTTCCEECSSCCE--EETTEEECTTTC--------BCTTTCCBCCSS
T ss_pred CCcCccCCCeecceeEE--EeCCceecCCCC--------cCcccCCcCCCC
Confidence 35799999988765543 236888998886 488888888654
No 243
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=21.05 E-value=32 Score=27.03 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=12.6
Q ss_pred CCCceeeecCCcccc
Q 018689 20 EPQMYFCHQCNRTVR 34 (352)
Q Consensus 20 ~~~~ywCh~C~r~V~ 34 (352)
.....|||.|+..|.
T Consensus 72 ~~~~vwcY~cd~~V~ 86 (102)
T 2ida_A 72 PEGWGWCYVDEVMFD 86 (102)
T ss_dssp CSCEEEETTTTEEEE
T ss_pred CCCCEEEcCCCcEEE
Confidence 447799999999985
No 244
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.76 E-value=27 Score=31.75 Aligned_cols=29 Identities=24% Similarity=0.755 Sum_probs=18.4
Q ss_pred eeeecCCcc-cccCC--CCCCCCcCCCCCCCc
Q 018689 24 YFCHQCNRT-VRVTP--SPSSDLVCPSCNGGF 52 (352)
Q Consensus 24 ywCh~C~r~-V~~~~--~~~~~~~CP~C~~gF 52 (352)
.||-.|... +.--+ .+..|+.||.|+..|
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 578888874 32111 235788888888766
No 245
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.63 E-value=72 Score=26.86 Aligned_cols=40 Identities=30% Similarity=0.741 Sum_probs=23.5
Q ss_pred CccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCC
Q 018689 195 SQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPT 243 (352)
Q Consensus 195 ~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~ 243 (352)
..|..|...+...+.++ ..-++.||..|+ .|-.|...|..
T Consensus 120 ~kC~~C~~~I~~~~~v~-~a~~~~~H~~CF--------~C~~C~~~L~~ 159 (182)
T 2jtn_A 120 TKCAACQLGIPPTQVVR-RAQDFVYHLHCF--------ACVVCKRQLAT 159 (182)
T ss_dssp CCCTTTCCCCCSSCCCC-EETTEECCTTTC--------CCTTTCCCCCT
T ss_pred cccccCCCccCCCceEE-ecCCCCEEeCCC--------cCCCCCCCCCC
Confidence 46777776665433221 124667777775 57777777653
No 246
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=20.50 E-value=14 Score=26.95 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=14.3
Q ss_pred CCCCcCCCCCCCceEEc
Q 018689 40 SSDLVCPSCNGGFIEEL 56 (352)
Q Consensus 40 ~~~~~CP~C~~gFvEEi 56 (352)
.....||||+--|+.+-
T Consensus 38 ~g~~~CpYCg~~f~l~~ 54 (67)
T 2jrr_A 38 TGWVECPYCDCKYVLKG 54 (67)
T ss_dssp TSEEEETTTTEEEEETT
T ss_pred CCeEECCCCCCEEEECC
Confidence 46799999999998764
No 247
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.45 E-value=65 Score=26.79 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=26.4
Q ss_pred CCccccccccccccCCceEcccCceecccchHHHhhcCCCCCccCCCCCCC
Q 018689 194 SSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTD 244 (352)
Q Consensus 194 ~~~C~IC~e~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~sCP~CR~~l~~~ 244 (352)
-..|..|...+.... . ..=+..||..|..+- ....|..|...|...
T Consensus 33 CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~--f~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC--F-SRGESVYCKDDFFKR--FGTKCAACQLGIPPT 78 (169)
T ss_dssp TSBCTTTCCBCCSCC--E-ESSSCEECHHHHHHH--HSCBCTTTCCBCCTT
T ss_pred cCccCCCCCcCCCCC--c-ccCCeeeeccccccc--ccccccccccccCCC
Confidence 466777766665421 1 223566666665442 245688887777643
No 248
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=20.36 E-value=45 Score=24.40 Aligned_cols=19 Identities=32% Similarity=0.887 Sum_probs=15.1
Q ss_pred eeecCCcccccCCCCCCCCcCCCCCC
Q 018689 25 FCHQCNRTVRVTPSPSSDLVCPSCNG 50 (352)
Q Consensus 25 wCh~C~r~V~~~~~~~~~~~CP~C~~ 50 (352)
=|-.|.+-| .+-.||.|++
T Consensus 13 AC~~C~~~~-------~~~~CPnC~s 31 (69)
T 1ryq_A 13 ACRHCHYIT-------SEDRCPVCGS 31 (69)
T ss_dssp EETTTCBEE-------SSSSCTTTCC
T ss_pred hHHhCCccc-------cCCcCCCccC
Confidence 488999955 4578999985
Done!