Query 018690
Match_columns 352
No_of_seqs 170 out of 218
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10186 Atg14: UV radiation r 100.0 1.3E-40 2.8E-45 316.8 27.8 251 40-331 21-276 (302)
2 KOG2896 UV radiation resistanc 100.0 5.2E-30 1.1E-34 249.2 23.8 106 207-332 208-313 (377)
3 PF04111 APG6: Autophagy prote 99.0 5.7E-08 1.2E-12 95.4 21.6 96 209-327 150-253 (314)
4 KOG4398 Predicted coiled-coil 98.8 9.9E-08 2.2E-12 91.1 15.0 77 235-345 187-270 (359)
5 KOG2751 Beclin-like protein [S 98.1 0.00072 1.6E-08 68.5 21.3 92 211-326 285-381 (447)
6 PRK11637 AmiB activator; Provi 92.8 12 0.00026 38.2 18.9 42 78-119 90-131 (428)
7 PF10186 Atg14: UV radiation r 91.5 13 0.00028 35.2 18.1 94 76-175 69-162 (302)
8 PF08317 Spc7: Spc7 kinetochor 88.8 26 0.00056 34.7 17.6 123 41-178 172-297 (325)
9 PF10392 COG5: Golgi transport 88.8 14 0.00031 31.7 15.0 93 30-122 9-110 (132)
10 TIGR03185 DNA_S_dndD DNA sulfu 88.7 14 0.00031 39.8 15.6 17 153-169 320-336 (650)
11 COG1579 Zn-ribbon protein, pos 88.7 14 0.0003 35.5 13.6 13 208-220 198-210 (239)
12 PRK10869 recombination and rep 88.5 14 0.00031 39.3 15.1 33 22-54 198-230 (553)
13 PRK09343 prefoldin subunit bet 88.4 15 0.00032 31.3 13.5 97 32-136 7-105 (121)
14 TIGR00634 recN DNA repair prot 87.9 18 0.0004 38.3 15.5 23 25-47 205-227 (563)
15 PF11932 DUF3450: Protein of u 87.4 19 0.00041 34.1 13.9 75 45-126 27-101 (251)
16 PF09726 Macoilin: Transmembra 87.1 53 0.0011 36.3 18.8 27 45-71 459-485 (697)
17 COG3883 Uncharacterized protei 86.5 11 0.00023 36.8 11.6 82 41-125 33-114 (265)
18 PLN03094 Substrate binding sub 85.5 32 0.00068 35.1 14.9 16 28-43 226-241 (370)
19 TIGR02680 conserved hypothetic 83.7 73 0.0016 37.8 18.8 86 31-119 853-938 (1353)
20 COG4942 Membrane-bound metallo 83.5 22 0.00047 36.8 12.8 29 151-179 103-131 (420)
21 PF06248 Zw10: Centromere/kine 83.4 57 0.0012 34.9 16.6 47 127-173 123-174 (593)
22 PRK09039 hypothetical protein; 82.9 54 0.0012 32.8 17.0 17 157-173 191-207 (343)
23 COG0497 RecN ATPase involved i 82.3 39 0.00085 36.3 14.5 81 43-130 266-346 (557)
24 TIGR01069 mutS2 MutS2 family p 82.2 53 0.0012 36.6 16.2 75 36-113 486-561 (771)
25 PF13805 Pil1: Eisosome compon 81.8 42 0.00091 32.8 13.5 58 30-91 122-179 (271)
26 PRK12704 phosphodiesterase; Pr 81.3 79 0.0017 33.6 17.7 11 311-321 382-392 (520)
27 KOG0994 Extracellular matrix g 80.4 45 0.00097 38.9 14.5 25 33-57 1519-1543(1758)
28 PF09730 BicD: Microtubule-ass 79.7 1.1E+02 0.0023 34.1 17.7 18 129-146 152-169 (717)
29 TIGR03319 YmdA_YtgF conserved 79.7 88 0.0019 33.2 17.5 8 312-319 377-384 (514)
30 TIGR03185 DNA_S_dndD DNA sulfu 79.3 99 0.0021 33.5 17.3 67 31-98 375-442 (650)
31 KOG0971 Microtubule-associated 78.7 87 0.0019 35.7 15.9 106 34-143 380-492 (1243)
32 KOG0994 Extracellular matrix g 78.6 68 0.0015 37.5 15.2 9 319-327 1736-1744(1758)
33 PF12128 DUF3584: Protein of u 78.5 1.4E+02 0.0029 35.1 18.5 74 30-106 597-671 (1201)
34 PF09304 Cortex-I_coil: Cortex 78.3 41 0.00088 28.5 14.2 23 39-61 16-38 (107)
35 PRK11637 AmiB activator; Provi 78.3 84 0.0018 32.1 19.4 9 237-245 343-351 (428)
36 PRK00106 hypothetical protein; 78.2 1E+02 0.0022 33.0 17.7 14 209-222 223-236 (535)
37 COG1579 Zn-ribbon protein, pos 77.9 68 0.0015 30.8 17.0 32 34-65 15-46 (239)
38 PF04100 Vps53_N: Vps53-like, 77.5 87 0.0019 31.9 15.7 83 40-126 19-102 (383)
39 PF10267 Tmemb_cc2: Predicted 77.4 37 0.0008 34.9 12.1 24 237-260 344-367 (395)
40 PF11180 DUF2968: Protein of u 76.8 40 0.00086 31.4 11.0 74 89-162 106-181 (192)
41 PF08614 ATG16: Autophagy prot 76.3 32 0.00069 31.4 10.4 28 41-68 76-103 (194)
42 PRK00409 recombination and DNA 76.2 91 0.002 34.8 15.7 74 36-119 491-565 (782)
43 KOG0243 Kinesin-like protein [ 75.2 1.2E+02 0.0027 34.9 16.2 134 36-173 398-552 (1041)
44 PHA02562 46 endonuclease subun 73.9 1.1E+02 0.0024 31.9 15.1 52 42-93 302-353 (562)
45 PRK00409 recombination and DNA 73.0 78 0.0017 35.3 14.2 31 310-340 712-746 (782)
46 PF15456 Uds1: Up-regulated Du 72.8 62 0.0013 27.9 11.0 48 21-69 11-58 (124)
47 COG1382 GimC Prefoldin, chaper 72.6 62 0.0013 27.9 12.6 99 32-136 6-104 (119)
48 PF10498 IFT57: Intra-flagella 72.5 1.2E+02 0.0025 30.9 14.3 27 42-68 230-256 (359)
49 KOG3850 Predicted membrane pro 72.3 82 0.0018 32.4 12.8 17 236-252 423-439 (455)
50 KOG1962 B-cell receptor-associ 71.9 55 0.0012 31.0 10.9 24 38-62 120-143 (216)
51 KOG4673 Transcription factor T 71.7 1.3E+02 0.0029 33.2 14.8 54 81-137 577-630 (961)
52 PTZ00491 major vault protein; 71.1 75 0.0016 35.8 13.2 16 231-246 831-846 (850)
53 PF08317 Spc7: Spc7 kinetochor 71.0 1.1E+02 0.0024 30.2 14.9 8 60-67 148-155 (325)
54 TIGR01069 mutS2 MutS2 family p 70.5 80 0.0017 35.2 13.5 37 310-347 701-742 (771)
55 PF11932 DUF3450: Protein of u 69.0 1.1E+02 0.0023 29.1 13.4 36 100-135 68-103 (251)
56 PF14817 HAUS5: HAUS augmin-li 68.2 1.9E+02 0.0041 31.7 17.0 26 152-177 446-471 (632)
57 COG0419 SbcC ATPase involved i 68.0 2.1E+02 0.0047 32.2 19.2 10 212-221 462-471 (908)
58 PRK10884 SH3 domain-containing 67.7 1E+02 0.0023 28.8 11.8 21 46-66 93-113 (206)
59 KOG2077 JNK/SAPK-associated pr 67.5 71 0.0015 34.6 11.6 67 57-123 298-364 (832)
60 smart00787 Spc7 Spc7 kinetocho 67.4 1.4E+02 0.003 29.7 14.8 15 51-65 177-191 (312)
61 PRK04863 mukB cell division pr 67.1 2.1E+02 0.0046 34.5 16.6 101 24-124 498-601 (1486)
62 PF06160 EzrA: Septation ring 66.5 1.9E+02 0.004 31.0 15.4 77 39-118 101-177 (560)
63 KOG0980 Actin-binding protein 66.4 2.4E+02 0.0052 32.2 15.8 25 43-67 330-354 (980)
64 TIGR00606 rad50 rad50. This fa 66.1 2.8E+02 0.006 32.8 19.6 29 153-181 357-385 (1311)
65 KOG0250 DNA repair protein RAD 66.0 2.6E+02 0.0057 32.5 18.9 46 28-73 270-315 (1074)
66 PRK10884 SH3 domain-containing 65.9 1.2E+02 0.0025 28.4 12.0 8 212-219 186-193 (206)
67 PRK11281 hypothetical protein; 65.7 1.5E+02 0.0032 34.7 14.6 11 31-41 62-72 (1113)
68 PRK12705 hypothetical protein; 65.2 2E+02 0.0042 30.7 15.3 12 251-262 294-305 (508)
69 PRK10929 putative mechanosensi 65.1 1.6E+02 0.0034 34.4 14.7 32 33-64 59-90 (1109)
70 PF12072 DUF3552: Domain of un 64.7 1.2E+02 0.0025 28.0 16.9 48 77-124 78-125 (201)
71 KOG1853 LIS1-interacting prote 64.6 1.5E+02 0.0032 29.1 13.8 103 29-131 16-127 (333)
72 PRK10869 recombination and rep 64.5 2E+02 0.0044 30.7 14.8 63 31-94 163-225 (553)
73 KOG0996 Structural maintenance 64.2 2.3E+02 0.005 33.3 15.4 10 317-326 718-727 (1293)
74 TIGR02338 gimC_beta prefoldin, 64.1 83 0.0018 26.1 13.1 91 33-129 4-94 (110)
75 PF05701 WEMBL: Weak chloropla 64.1 2E+02 0.0043 30.5 15.8 88 31-118 227-329 (522)
76 PF07888 CALCOCO1: Calcium bin 63.9 2.1E+02 0.0046 30.7 17.9 16 48-63 180-195 (546)
77 PF10168 Nup88: Nuclear pore c 63.4 2.5E+02 0.0053 31.3 15.5 18 105-122 603-620 (717)
78 KOG4182 Uncharacterized conser 63.4 1.4E+02 0.0031 31.8 12.7 72 107-178 176-247 (828)
79 TIGR03545 conserved hypothetic 63.1 61 0.0013 34.8 10.5 45 80-124 215-259 (555)
80 PF13747 DUF4164: Domain of un 63.0 81 0.0018 25.6 12.0 26 44-69 6-31 (89)
81 PF12325 TMF_TATA_bd: TATA ele 62.7 1E+02 0.0022 26.5 11.5 27 43-69 20-46 (120)
82 PF00038 Filament: Intermediat 62.6 1.5E+02 0.0033 28.5 16.6 30 40-69 12-41 (312)
83 PRK11281 hypothetical protein; 62.2 93 0.002 36.3 12.3 20 125-144 162-181 (1113)
84 KOG0976 Rho/Rac1-interacting s 61.9 2.5E+02 0.0055 31.8 14.7 105 26-138 318-422 (1265)
85 TIGR00606 rad50 rad50. This fa 61.9 1.8E+02 0.0038 34.4 14.8 36 30-65 823-862 (1311)
86 PF12761 End3: Actin cytoskele 61.5 75 0.0016 29.7 9.4 51 18-68 83-143 (195)
87 PRK09343 prefoldin subunit bet 61.3 1E+02 0.0022 26.2 11.6 28 43-70 4-31 (121)
88 PF14712 Snapin_Pallidin: Snap 60.6 83 0.0018 24.9 9.8 30 41-70 16-45 (92)
89 KOG0249 LAR-interacting protei 60.5 2.8E+02 0.0061 31.0 14.7 21 45-65 104-124 (916)
90 PRK08475 F0F1 ATP synthase sub 60.2 1.3E+02 0.0028 26.9 14.3 17 156-172 133-149 (167)
91 TIGR00634 recN DNA repair prot 60.1 1.9E+02 0.004 30.8 13.5 107 32-142 251-362 (563)
92 PF03670 UPF0184: Uncharacteri 59.9 50 0.0011 26.8 7.0 45 26-70 20-64 (83)
93 KOG0995 Centromere-associated 59.5 2.6E+02 0.0056 30.3 15.9 37 30-66 218-255 (581)
94 TIGR02680 conserved hypothetic 59.5 3.7E+02 0.0081 32.1 19.0 8 255-262 1218-1225(1353)
95 PHA03246 large tegument protei 59.3 57 0.0012 40.6 10.0 90 35-124 996-1096(3095)
96 PF06005 DUF904: Protein of un 59.1 85 0.0018 24.5 10.5 25 44-68 9-33 (72)
97 KOG1029 Endocytic adaptor prot 58.5 3.2E+02 0.0069 31.0 14.9 36 72-107 467-502 (1118)
98 TIGR03752 conj_TIGR03752 integ 58.4 1.1E+02 0.0024 32.3 11.0 22 48-69 61-82 (472)
99 PF10191 COG7: Golgi complex c 58.0 3E+02 0.0065 30.7 15.1 16 128-143 146-161 (766)
100 COG3074 Uncharacterized protei 57.9 92 0.002 24.6 9.6 29 42-70 7-35 (79)
101 PF04156 IncA: IncA protein; 57.2 1.4E+02 0.0031 26.6 16.0 14 49-62 91-104 (191)
102 TIGR01005 eps_transp_fam exopo 57.2 3E+02 0.0064 30.2 19.6 30 31-63 239-268 (754)
103 KOG3091 Nuclear pore complex, 56.9 2.7E+02 0.0058 29.6 15.2 14 25-38 330-343 (508)
104 PRK03918 chromosome segregatio 56.3 3.2E+02 0.0069 30.3 19.2 8 269-276 814-821 (880)
105 PLN03188 kinesin-12 family pro 55.4 4.3E+02 0.0092 31.5 18.0 51 93-143 1164-1214(1320)
106 KOG0612 Rho-associated, coiled 55.1 4.2E+02 0.0092 31.3 15.6 18 33-50 469-486 (1317)
107 PF07888 CALCOCO1: Calcium bin 54.9 3E+02 0.0066 29.6 16.0 10 128-137 412-421 (546)
108 PF07851 TMPIT: TMPIT-like pro 54.5 90 0.0019 31.4 9.3 9 30-38 5-13 (330)
109 KOG2685 Cystoskeletal protein 54.5 1.5E+02 0.0032 30.8 11.0 9 29-37 227-235 (421)
110 KOG0976 Rho/Rac1-interacting s 54.4 3.8E+02 0.0082 30.6 16.2 35 100-134 405-439 (1265)
111 COG4026 Uncharacterized protei 54.1 1.8E+02 0.004 27.9 10.8 65 75-143 126-190 (290)
112 PRK10476 multidrug resistance 54.1 2.2E+02 0.0049 27.9 15.7 11 265-275 277-287 (346)
113 PF12777 MT: Microtubule-bindi 53.9 64 0.0014 32.1 8.3 43 127-169 271-314 (344)
114 PF09726 Macoilin: Transmembra 53.7 3.5E+02 0.0076 30.0 19.1 31 40-70 475-505 (697)
115 PF05529 Bap31: B-cell recepto 53.4 1E+02 0.0023 27.8 9.0 30 38-67 117-146 (192)
116 PF06632 XRCC4: DNA double-str 53.4 2E+02 0.0043 29.1 11.7 41 36-76 134-174 (342)
117 PRK03918 chromosome segregatio 53.3 3.5E+02 0.0077 29.9 19.6 10 28-37 154-163 (880)
118 COG4942 Membrane-bound metallo 53.2 2.9E+02 0.0062 28.8 18.7 35 34-68 40-74 (420)
119 PRK06665 flgK flagellar hook-a 52.9 3.4E+02 0.0073 29.6 14.5 26 155-180 204-229 (627)
120 TIGR02449 conserved hypothetic 51.2 1.1E+02 0.0024 23.6 8.6 11 57-67 4-14 (65)
121 PRK09039 hypothetical protein; 51.1 2.7E+02 0.0058 27.9 18.5 18 153-170 176-193 (343)
122 KOG4643 Uncharacterized coiled 50.8 4.6E+02 0.01 30.5 18.7 19 310-328 815-833 (1195)
123 COG3206 GumC Uncharacterized p 50.6 3E+02 0.0065 28.3 15.7 12 151-162 375-386 (458)
124 KOG2180 Late Golgi protein sor 50.4 4E+02 0.0088 29.7 14.0 89 39-131 33-122 (793)
125 KOG0250 DNA repair protein RAD 49.9 4.8E+02 0.01 30.4 18.1 15 311-325 658-672 (1074)
126 PF08614 ATG16: Autophagy prot 49.9 1.9E+02 0.0042 26.2 10.3 30 109-138 144-173 (194)
127 KOG0971 Microtubule-associated 49.6 3.8E+02 0.0082 30.9 13.7 74 46-119 945-1018(1243)
128 KOG0163 Myosin class VI heavy 49.5 4.4E+02 0.0096 29.9 15.0 24 45-68 881-904 (1259)
129 KOG0804 Cytoplasmic Zn-finger 48.8 3.4E+02 0.0073 28.7 12.5 14 54-67 348-361 (493)
130 PRK12704 phosphodiesterase; Pr 48.8 3.6E+02 0.0078 28.7 17.0 20 151-170 160-179 (520)
131 TIGR03319 YmdA_YtgF conserved 48.7 3.6E+02 0.0078 28.7 16.7 15 209-223 202-216 (514)
132 PRK07191 flgK flagellar hook-a 48.5 3.3E+02 0.0072 28.2 14.1 26 155-180 192-217 (456)
133 PRK14161 heat shock protein Gr 47.9 2.1E+02 0.0047 26.1 10.1 21 158-179 104-124 (178)
134 PF14362 DUF4407: Domain of un 47.8 2.7E+02 0.0058 26.9 12.4 18 49-66 145-162 (301)
135 PRK06231 F0F1 ATP synthase sub 47.1 2.4E+02 0.0052 26.1 14.7 12 56-67 82-93 (205)
136 PF10475 DUF2450: Protein of u 47.0 2.8E+02 0.006 26.9 17.1 52 55-106 44-96 (291)
137 PLN03086 PRLI-interacting fact 46.1 1.3E+02 0.0028 32.5 9.5 51 85-139 19-70 (567)
138 smart00502 BBC B-Box C-termina 46.0 1.6E+02 0.0034 23.7 12.8 20 45-64 6-25 (127)
139 PRK02224 chromosome segregatio 44.9 4.8E+02 0.01 29.0 18.7 6 271-276 815-820 (880)
140 PRK07521 flgK flagellar hook-a 44.8 3.9E+02 0.0084 27.9 14.9 26 155-180 187-212 (483)
141 TIGR03752 conj_TIGR03752 integ 44.6 2.5E+02 0.0054 29.7 11.0 28 42-69 62-89 (472)
142 PF04111 APG6: Autophagy prote 44.3 3.3E+02 0.0071 27.0 12.6 63 236-327 241-305 (314)
143 PF00261 Tropomyosin: Tropomyo 43.9 2.8E+02 0.0061 26.0 15.9 24 40-63 93-116 (237)
144 COG1196 Smc Chromosome segrega 43.8 5.9E+02 0.013 29.7 18.8 9 268-276 1089-1097(1163)
145 PF03962 Mnd1: Mnd1 family; I 43.6 2.6E+02 0.0057 25.6 11.2 32 38-69 68-99 (188)
146 KOG0972 Huntingtin interacting 43.5 3.5E+02 0.0077 27.1 12.6 24 43-66 252-275 (384)
147 PF06103 DUF948: Bacterial pro 43.5 1.6E+02 0.0035 23.2 9.3 32 39-70 19-50 (90)
148 COG4575 ElaB Uncharacterized c 43.4 2E+02 0.0044 24.3 9.5 21 49-69 11-31 (104)
149 PRK09841 cryptic autophosphory 43.3 4.9E+02 0.011 28.7 17.7 19 309-327 508-526 (726)
150 PF13514 AAA_27: AAA domain 43.2 5.7E+02 0.012 29.6 14.8 136 31-168 735-873 (1111)
151 PHA03247 large tegument protei 43.1 2.4E+02 0.0053 36.0 11.8 90 34-124 912-1024(3151)
152 KOG4460 Nuclear pore complex, 43.1 4.8E+02 0.01 28.5 14.1 22 151-172 714-735 (741)
153 PF10267 Tmemb_cc2: Predicted 42.9 4E+02 0.0087 27.5 18.6 26 44-69 249-274 (395)
154 PF04849 HAP1_N: HAP1 N-termin 42.8 3.6E+02 0.0077 27.0 13.7 30 27-66 158-187 (306)
155 COG1463 Ttg2C ABC-type transpo 42.5 3.6E+02 0.0078 26.9 16.2 51 24-74 134-190 (359)
156 PF07795 DUF1635: Protein of u 41.6 1.8E+02 0.0039 27.6 8.7 37 79-118 3-39 (214)
157 PRK10698 phage shock protein P 41.5 3E+02 0.0066 25.8 14.8 36 31-69 33-68 (222)
158 COG1196 Smc Chromosome segrega 41.1 6.5E+02 0.014 29.4 19.1 15 261-275 1026-1041(1163)
159 PRK08147 flgK flagellar hook-a 40.8 4.7E+02 0.01 27.7 14.6 25 156-180 196-220 (547)
160 cd00632 Prefoldin_beta Prefold 40.7 2E+02 0.0043 23.5 12.6 28 100-127 61-88 (105)
161 KOG0163 Myosin class VI heavy 40.1 6.1E+02 0.013 28.9 13.9 9 209-217 1064-1072(1259)
162 PF05335 DUF745: Protein of un 40.1 3.1E+02 0.0066 25.4 16.5 38 125-164 129-166 (188)
163 PF08826 DMPK_coil: DMPK coile 39.7 1.7E+02 0.0036 22.3 8.6 21 44-64 2-22 (61)
164 TIGR02231 conserved hypothetic 39.6 4.6E+02 0.01 27.5 12.5 18 45-62 84-101 (525)
165 PF05266 DUF724: Protein of un 39.6 3.1E+02 0.0067 25.3 13.2 27 54-80 87-113 (190)
166 TIGR00414 serS seryl-tRNA synt 39.6 3E+02 0.0065 28.3 10.8 18 332-349 386-403 (418)
167 PF06785 UPF0242: Uncharacteri 39.4 4.3E+02 0.0094 26.9 14.5 15 163-177 211-225 (401)
168 PF15254 CCDC14: Coiled-coil d 39.1 6.2E+02 0.013 28.6 15.4 27 43-69 438-464 (861)
169 PF02403 Seryl_tRNA_N: Seryl-t 38.8 2.1E+02 0.0046 23.2 8.8 16 108-123 49-64 (108)
170 TIGR02231 conserved hypothetic 38.3 4.1E+02 0.0089 27.9 11.8 28 40-67 72-99 (525)
171 PRK07352 F0F1 ATP synthase sub 38.1 2.9E+02 0.0063 24.5 14.7 12 24-35 12-23 (174)
172 PRK05431 seryl-tRNA synthetase 37.8 2.1E+02 0.0045 29.5 9.3 6 253-258 310-315 (425)
173 PF10191 COG7: Golgi complex c 37.8 6.2E+02 0.013 28.3 14.9 20 154-173 191-210 (766)
174 PRK11578 macrolide transporter 37.1 4.1E+02 0.0088 26.3 11.1 14 129-142 168-181 (370)
175 COG4026 Uncharacterized protei 37.0 3.9E+02 0.0085 25.8 11.7 59 32-93 110-172 (290)
176 TIGR00237 xseA exodeoxyribonuc 37.0 4.9E+02 0.011 26.9 16.0 25 28-52 251-275 (432)
177 KOG0979 Structural maintenance 36.9 7.3E+02 0.016 28.9 15.4 149 17-172 167-348 (1072)
178 PRK09174 F0F1 ATP synthase sub 36.6 3.5E+02 0.0076 25.1 14.7 10 61-70 77-86 (204)
179 PF09738 DUF2051: Double stran 36.4 4.4E+02 0.0096 26.2 13.5 19 76-94 104-122 (302)
180 KOG0249 LAR-interacting protei 36.2 6.7E+02 0.015 28.2 14.8 82 34-116 107-188 (916)
181 COG1842 PspA Phage shock prote 36.1 3.8E+02 0.0083 25.4 16.7 30 40-69 39-68 (225)
182 PRK06975 bifunctional uroporph 36.1 5.6E+02 0.012 28.0 12.7 77 103-179 393-483 (656)
183 KOG0977 Nuclear envelope prote 35.5 6E+02 0.013 27.5 15.1 27 42-68 95-121 (546)
184 KOG3032 Uncharacterized conser 35.4 2.1E+02 0.0046 27.6 8.1 35 30-64 168-202 (264)
185 PF09731 Mitofilin: Mitochondr 35.4 5.7E+02 0.012 27.1 17.4 17 242-258 494-510 (582)
186 cd07666 BAR_SNX7 The Bin/Amphi 35.0 4.2E+02 0.009 25.5 13.0 8 112-119 180-187 (243)
187 PF13851 GAS: Growth-arrest sp 35.0 3.7E+02 0.008 24.9 14.7 105 63-173 19-127 (201)
188 PF09177 Syntaxin-6_N: Syntaxi 34.7 2.2E+02 0.0047 22.9 7.3 7 34-40 10-16 (97)
189 PF10475 DUF2450: Protein of u 34.7 4.3E+02 0.0093 25.5 13.7 15 334-348 272-286 (291)
190 PF03310 Cauli_DNA-bind: Cauli 34.7 3E+02 0.0065 23.8 8.2 28 43-70 3-30 (121)
191 TIGR02977 phageshock_pspA phag 34.6 3.8E+02 0.0082 24.9 14.6 23 80-102 34-56 (219)
192 PF05400 FliT: Flagellar prote 34.5 2E+02 0.0043 21.6 8.0 30 96-125 49-78 (84)
193 PF06156 DUF972: Protein of un 34.2 2.2E+02 0.0048 23.9 7.4 33 38-70 7-39 (107)
194 PLN02320 seryl-tRNA synthetase 34.1 2.1E+02 0.0046 30.4 8.8 8 25-32 57-64 (502)
195 PRK00106 hypothetical protein; 33.9 6.3E+02 0.014 27.2 17.4 20 151-170 175-194 (535)
196 PF06120 Phage_HK97_TLTM: Tail 33.8 4.9E+02 0.011 25.9 15.1 64 45-108 40-105 (301)
197 PRK00286 xseA exodeoxyribonucl 33.7 5.3E+02 0.012 26.3 17.0 26 28-53 256-281 (438)
198 KOG2185 Predicted RNA-processi 33.6 2.5E+02 0.0054 29.3 8.8 31 77-107 444-474 (486)
199 PHA02562 46 endonuclease subun 33.4 5.7E+02 0.012 26.6 18.4 6 271-276 500-505 (562)
200 TIGR00414 serS seryl-tRNA synt 33.4 3.8E+02 0.0083 27.5 10.4 31 38-68 29-59 (418)
201 PRK04778 septation ring format 33.4 6.2E+02 0.014 27.0 15.7 28 41-68 107-134 (569)
202 PHA03332 membrane glycoprotein 33.0 8.8E+02 0.019 28.6 14.2 26 212-243 1021-1046(1328)
203 COG4985 ABC-type phosphate tra 32.5 4.8E+02 0.01 25.4 11.2 21 47-67 165-185 (289)
204 PF12795 MscS_porin: Mechanose 32.4 4.2E+02 0.0092 24.7 15.1 63 32-94 31-95 (240)
205 COG4372 Uncharacterized protei 32.1 6.1E+02 0.013 26.5 17.0 21 48-68 153-173 (499)
206 PF12128 DUF3584: Protein of u 31.8 9.1E+02 0.02 28.4 18.4 19 76-94 351-369 (1201)
207 KOG3915 Transcription regulato 31.7 6.1E+02 0.013 27.0 11.3 19 50-68 496-514 (641)
208 COG1382 GimC Prefoldin, chaper 31.6 3.4E+02 0.0074 23.4 10.6 14 53-66 13-26 (119)
209 PRK05431 seryl-tRNA synthetase 31.5 4.2E+02 0.0091 27.3 10.4 28 40-67 29-56 (425)
210 PF10828 DUF2570: Protein of u 31.5 3E+02 0.0066 22.8 10.3 64 41-114 20-83 (110)
211 PF12718 Tropomyosin_1: Tropom 31.5 3.6E+02 0.0077 23.6 17.2 60 33-95 8-67 (143)
212 TIGR03007 pepcterm_ChnLen poly 31.5 5.6E+02 0.012 26.4 11.4 112 32-143 261-372 (498)
213 PHA02047 phage lambda Rz1-like 31.4 2.3E+02 0.0049 23.7 6.6 29 86-114 43-71 (101)
214 PRK06569 F0F1 ATP synthase sub 31.2 3.9E+02 0.0085 24.0 11.7 17 102-118 88-104 (155)
215 KOG0239 Kinesin (KAR3 subfamil 31.2 7.6E+02 0.016 27.3 13.8 16 315-330 447-462 (670)
216 PRK12715 flgK flagellar hook-a 30.9 7.5E+02 0.016 27.2 14.7 24 157-180 190-213 (649)
217 PRK10929 putative mechanosensi 30.1 9.7E+02 0.021 28.2 15.5 12 27-38 100-111 (1109)
218 TIGR00998 8a0101 efflux pump m 29.8 5.1E+02 0.011 24.9 15.8 17 45-61 86-102 (334)
219 PRK04863 mukB cell division pr 29.7 1.1E+03 0.024 28.7 19.1 23 236-258 701-732 (1486)
220 KOG0995 Centromere-associated 29.5 7.7E+02 0.017 26.8 14.4 10 31-40 268-277 (581)
221 PRK11519 tyrosine kinase; Prov 29.4 5.9E+02 0.013 28.0 11.6 103 40-143 275-387 (719)
222 PRK06945 flgK flagellar hook-a 29.2 7.9E+02 0.017 26.9 15.1 25 156-180 195-219 (651)
223 KOG4715 SWI/SNF-related matrix 29.2 3.2E+02 0.007 27.6 8.5 73 60-135 200-272 (410)
224 PF10234 Cluap1: Clusterin-ass 29.1 5.6E+02 0.012 25.1 13.6 82 30-118 118-199 (267)
225 PF02403 Seryl_tRNA_N: Seryl-t 28.7 3.2E+02 0.0069 22.1 9.8 6 62-67 28-33 (108)
226 KOG0161 Myosin class II heavy 28.6 1.3E+03 0.027 29.1 18.5 19 154-172 1119-1137(1930)
227 PRK14472 F0F1 ATP synthase sub 28.5 4.2E+02 0.0091 23.5 14.7 9 57-65 53-61 (175)
228 PRK13460 F0F1 ATP synthase sub 28.3 4.2E+02 0.0092 23.5 14.7 12 56-67 50-61 (173)
229 KOG0933 Structural maintenance 28.3 1E+03 0.022 27.9 17.5 22 15-36 660-681 (1174)
230 PF07889 DUF1664: Protein of u 28.2 4E+02 0.0086 23.1 10.9 22 100-121 52-73 (126)
231 TIGR02971 heterocyst_DevB ABC 28.0 5.5E+02 0.012 24.7 14.4 11 264-274 270-280 (327)
232 KOG4643 Uncharacterized coiled 28.0 8.6E+02 0.019 28.5 12.4 24 45-68 204-227 (1195)
233 PF09325 Vps5: Vps5 C terminal 27.9 4.6E+02 0.01 23.8 16.7 17 34-50 80-96 (236)
234 PF11559 ADIP: Afadin- and alp 27.7 4E+02 0.0086 23.0 16.7 33 33-65 32-64 (151)
235 TIGR00996 Mtu_fam_mce virulenc 27.7 5.4E+02 0.012 24.4 14.5 44 86-129 183-226 (291)
236 KOG2391 Vacuolar sorting prote 27.5 6E+02 0.013 25.9 10.1 33 55-87 227-259 (365)
237 PF06248 Zw10: Centromere/kine 27.4 7.8E+02 0.017 26.3 17.3 10 31-40 9-18 (593)
238 PRK13729 conjugal transfer pil 27.3 2.1E+02 0.0045 30.3 7.2 18 47-64 70-87 (475)
239 PRK13455 F0F1 ATP synthase sub 27.2 4.6E+02 0.0099 23.5 14.5 13 55-67 60-72 (184)
240 PHA03332 membrane glycoprotein 27.1 7.4E+02 0.016 29.1 11.7 20 42-61 894-913 (1328)
241 PF09304 Cortex-I_coil: Cortex 27.0 3.9E+02 0.0085 22.7 10.9 27 98-124 47-73 (107)
242 TIGR03017 EpsF chain length de 26.9 6.7E+02 0.014 25.3 13.6 23 39-61 215-237 (444)
243 COG3096 MukB Uncharacterized p 26.7 1E+03 0.022 27.3 15.7 49 76-124 552-600 (1480)
244 COG2433 Uncharacterized conser 26.6 8.9E+02 0.019 26.6 13.8 13 163-175 530-542 (652)
245 PRK15422 septal ring assembly 26.5 3.4E+02 0.0074 21.8 10.4 30 41-70 6-35 (79)
246 KOG2391 Vacuolar sorting prote 26.4 5E+02 0.011 26.5 9.4 30 89-118 240-269 (365)
247 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.3 4.1E+02 0.0089 22.6 16.2 27 42-68 6-32 (132)
248 COG1340 Uncharacterized archae 26.2 6.6E+02 0.014 25.0 13.5 33 40-72 14-46 (294)
249 KOG1029 Endocytic adaptor prot 26.2 1E+03 0.022 27.2 14.0 22 320-341 935-957 (1118)
250 PF05701 WEMBL: Weak chloropla 26.1 8E+02 0.017 26.0 15.0 17 51-67 314-330 (522)
251 PF05667 DUF812: Protein of un 26.0 8.8E+02 0.019 26.4 17.2 18 45-62 334-351 (594)
252 KOG0612 Rho-associated, coiled 26.0 1.2E+03 0.026 27.9 16.8 12 333-344 936-947 (1317)
253 PRK13729 conjugal transfer pil 25.8 2.4E+02 0.0052 29.9 7.4 11 109-119 97-107 (475)
254 PRK14474 F0F1 ATP synthase sub 25.7 5.9E+02 0.013 24.3 14.7 13 55-67 38-50 (250)
255 PF12777 MT: Microtubule-bindi 25.6 6.7E+02 0.015 24.9 12.5 30 227-257 183-212 (344)
256 PRK13169 DNA replication intia 25.3 2.6E+02 0.0057 23.7 6.3 33 38-70 7-39 (110)
257 PRK13453 F0F1 ATP synthase sub 25.3 4.9E+02 0.011 23.2 14.7 12 56-67 52-63 (173)
258 PF13779 DUF4175: Domain of un 25.3 1E+03 0.022 27.0 14.2 107 32-143 446-571 (820)
259 PF08181 DegQ: DegQ (SacQ) fam 25.2 1.7E+02 0.0036 20.7 4.1 32 31-65 6-37 (46)
260 PF14852 Fis1_TPR_N: Fis1 N-te 25.1 55 0.0012 22.0 1.8 12 309-320 2-13 (35)
261 PF11887 DUF3407: Protein of u 24.9 6.2E+02 0.014 24.3 13.2 25 98-122 80-104 (267)
262 COG1566 EmrA Multidrug resista 24.9 7.4E+02 0.016 25.1 14.7 35 29-66 84-118 (352)
263 KOG0977 Nuclear envelope prote 24.8 9.1E+02 0.02 26.1 16.5 15 51-65 111-125 (546)
264 KOG0963 Transcription factor/C 24.7 9.6E+02 0.021 26.4 15.0 39 30-68 129-167 (629)
265 COG0497 RecN ATPase involved i 24.6 9.2E+02 0.02 26.1 16.8 37 22-58 198-234 (557)
266 PRK03947 prefoldin subunit alp 24.6 4.4E+02 0.0095 22.4 13.0 15 105-119 97-111 (140)
267 PRK00888 ftsB cell division pr 24.4 2.8E+02 0.0061 23.0 6.3 19 104-122 43-61 (105)
268 PF05700 BCAS2: Breast carcino 24.3 5.8E+02 0.013 23.7 11.8 80 38-117 135-215 (221)
269 PF07795 DUF1635: Protein of u 24.3 4.4E+02 0.0096 25.0 8.2 25 99-123 37-61 (214)
270 PF07464 ApoLp-III: Apolipopho 24.2 1.9E+02 0.0041 25.9 5.6 19 54-72 35-53 (155)
271 PLN02678 seryl-tRNA synthetase 24.0 7E+02 0.015 26.1 10.4 29 38-66 32-60 (448)
272 PRK01156 chromosome segregatio 23.8 1.1E+03 0.023 26.5 15.9 112 32-143 622-736 (895)
273 TIGR03321 alt_F1F0_F0_B altern 23.8 6.2E+02 0.013 23.8 14.7 11 246-256 194-204 (246)
274 PF11887 DUF3407: Protein of u 23.8 6.6E+02 0.014 24.1 9.7 74 100-178 61-134 (267)
275 PF15290 Syntaphilin: Golgi-lo 23.7 5.8E+02 0.013 25.3 9.1 62 55-121 74-136 (305)
276 TIGR02302 aProt_lowcomp conser 23.7 1E+03 0.023 27.1 12.3 53 32-88 477-534 (851)
277 COG1256 FlgK Flagellar hook-as 23.7 3.9E+02 0.0085 28.7 8.7 79 38-123 137-215 (552)
278 PF07851 TMPIT: TMPIT-like pro 23.4 7.8E+02 0.017 24.9 10.3 12 316-327 215-226 (330)
279 PF00769 ERM: Ezrin/radixin/mo 23.3 6.5E+02 0.014 23.9 13.4 98 45-142 25-126 (246)
280 PRK12714 flgK flagellar hook-a 23.3 9.8E+02 0.021 26.0 14.4 24 156-179 191-214 (624)
281 PF11180 DUF2968: Protein of u 23.2 6.2E+02 0.013 23.6 13.2 17 46-62 98-114 (192)
282 PRK03598 putative efflux pump 23.2 6.9E+02 0.015 24.2 13.8 9 265-273 272-280 (331)
283 TIGR03017 EpsF chain length de 23.0 7.9E+02 0.017 24.8 20.6 43 48-93 256-298 (444)
284 PF07352 Phage_Mu_Gam: Bacteri 22.9 4.2E+02 0.0091 23.0 7.5 20 30-49 1-20 (149)
285 KOG0996 Structural maintenance 22.9 1.3E+03 0.029 27.4 16.9 13 311-323 706-718 (1293)
286 KOG1962 B-cell receptor-associ 22.7 6.7E+02 0.014 23.8 11.9 14 38-51 113-126 (216)
287 PF04344 CheZ: Chemotaxis phos 21.8 6.6E+02 0.014 23.4 12.4 44 76-119 33-76 (214)
288 KOG0982 Centrosomal protein Nu 21.8 9.6E+02 0.021 25.3 13.0 122 40-172 223-344 (502)
289 KOG4673 Transcription factor T 21.6 1.2E+03 0.026 26.3 16.7 36 38-73 408-443 (961)
290 PRK09174 F0F1 ATP synthase sub 21.6 6.5E+02 0.014 23.3 13.0 43 48-93 78-121 (204)
291 KOG0964 Structural maintenance 21.6 1.3E+03 0.029 26.9 14.1 102 34-138 395-500 (1200)
292 PF12325 TMF_TATA_bd: TATA ele 21.5 5.2E+02 0.011 22.1 14.0 55 14-70 3-61 (120)
293 PF05010 TACC: Transforming ac 21.5 6.8E+02 0.015 23.5 16.2 79 33-114 77-155 (207)
294 PRK06799 flgK flagellar hook-a 21.4 9.1E+02 0.02 24.9 14.5 23 156-178 196-218 (431)
295 KOG2264 Exostosin EXT1L [Signa 21.4 6.2E+02 0.013 27.8 9.4 17 48-64 95-111 (907)
296 PF05010 TACC: Transforming ac 21.4 6.8E+02 0.015 23.5 16.4 23 48-70 57-79 (207)
297 COG4372 Uncharacterized protei 21.4 9.5E+02 0.021 25.1 17.1 12 27-38 72-83 (499)
298 COG1256 FlgK Flagellar hook-as 21.3 1E+03 0.023 25.6 14.9 25 156-180 197-221 (552)
299 PHA01750 hypothetical protein 21.1 1.5E+02 0.0032 23.2 3.6 19 45-63 48-66 (75)
300 PF15294 Leu_zip: Leucine zipp 21.0 8.1E+02 0.017 24.2 10.9 22 45-66 152-173 (278)
301 PF10234 Cluap1: Clusterin-ass 21.0 7.9E+02 0.017 24.0 14.6 25 94-118 161-185 (267)
302 PF14662 CCDC155: Coiled-coil 21.0 6.9E+02 0.015 23.4 16.9 50 41-93 10-59 (193)
303 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.7 5.3E+02 0.012 21.9 17.6 28 40-67 11-38 (132)
304 PRK14475 F0F1 ATP synthase sub 20.6 5.9E+02 0.013 22.4 14.4 7 58-64 46-52 (167)
305 PF15556 Zwint: ZW10 interacto 20.2 7.6E+02 0.016 23.5 13.2 10 45-54 55-64 (252)
306 KOG4674 Uncharacterized conser 20.2 1.7E+03 0.038 27.7 18.0 98 15-119 620-720 (1822)
307 KOG2264 Exostosin EXT1L [Signa 20.1 6.6E+02 0.014 27.6 9.3 24 103-126 94-117 (907)
308 PLN03086 PRLI-interacting fact 20.0 6.2E+02 0.013 27.5 9.3 15 209-223 173-187 (567)
No 1
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=100.00 E-value=1.3e-40 Score=316.83 Aligned_cols=251 Identities=29% Similarity=0.449 Sum_probs=190.7
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ-----VKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~-----~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL 114 (352)
||.++..+|+++.+.++.|.++|+++|+ ..........++.+++.++...+..++..+.+.+..++.+.+.++.|
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999 65566667778888888888888888887777777777777777777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhccceeeCCCCcccccccCCCCC
Q 018690 115 SMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGN 194 (352)
Q Consensus 115 ~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~l~~qL~~IYPI~~~~~~~~~~~~~~~~~~~ 194 (352)
..+...+.............+.+....+... ...+..++.++..+|..+|.+|..||||+++..+. ..
T Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~----------~~ 168 (302)
T PF10186_consen 101 EQRRSRLSASQDLVESRQEQLEELQNELEER--KQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPR----------RP 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccc----------cC
Confidence 7777766622222223333333333333221 24566799999999999999999999999872110 00
Q ss_pred CCCCCCCCCCCCCCceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeec
Q 018690 195 RSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND 274 (352)
Q Consensus 195 ~~g~~~~~~~~~~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpLpYPi~~~gSrSyI~D 274 (352)
.+..+..|+|||++||+.. .|...++ +.++||||||||+|.|+|+||+|||||||.+.||+|+|.|
T Consensus 169 --------~~~~~~~~~I~~~~lp~~~-----~~~~~~~-~~isaALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d 234 (302)
T PF10186_consen 169 --------SDSSSSEYTICGLPLPNSR-----DFNSLPD-EEISAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID 234 (302)
T ss_pred --------CCCCCCCeeecCcccCCCc-----ccccCCH-HHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh
Confidence 0011469999999999963 2333333 5799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHhhcC
Q 018690 275 YAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSD 331 (352)
Q Consensus 275 ~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~g~d~~rFeYaVfLLNKnI~~L~~sq~ 331 (352)
.++ ....+..++.+.++.+..+|+||||||||||+|||++||
T Consensus 235 -~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~lLn~nI~~L~~~q~ 276 (302)
T PF10186_consen 235 -FSP--------------SIDRPLPSLSYESGVDRQRFEYAVFLLNKNIAQLCFSQG 276 (302)
T ss_pred -ccc--------------ccCCcchhhhccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 321 122344455555577899999999999999999999988
No 2
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=249.22 Aligned_cols=106 Identities=43% Similarity=0.732 Sum_probs=93.3
Q ss_pred CCceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeecCCCCCCCCCccc
Q 018690 207 PGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLS 286 (352)
Q Consensus 207 ~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~ 286 (352)
...|||||++||+-. .|..+++ ..+||||||+||||++||.||.+||||||.+.||+|||.|+++...|
T Consensus 208 ~~v~tIrGl~lp~~~-----d~~~~s~-~~~aaALGylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~----- 276 (377)
T KOG2896|consen 208 HLVFTIRGLKLPFIE-----DKQNKSE-QETAAALGYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIET----- 276 (377)
T ss_pred hhhhhhhcccCCchh-----hhhccch-HHHHHHHHHHHHHHHHHHHHhccccccccccccccceecccCCcccc-----
Confidence 467999999999964 2223434 47999999999999999999999999999999999999999987642
Q ss_pred ccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHhhcCc
Q 018690 287 SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQ 332 (352)
Q Consensus 287 ~~~~~~~~~~~r~fPLy~~g~d~~rFeYaVfLLNKnI~~L~~sq~~ 332 (352)
..|+||||.++++..+|+||+|||||||++||++.|.
T Consensus 277 ---------ttr~fply~k~~~~e~f~~glylL~qNiaqlr~~~gl 313 (377)
T KOG2896|consen 277 ---------TTREFPLYTKSQEIEQFEYGLYLLNQNIAQLRYDCGL 313 (377)
T ss_pred ---------ccccccCccccchHHHHHHHHHHHhccHHHHHHHcCC
Confidence 2799999999999999999999999999999988775
No 3
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=99.02 E-value=5.7e-08 Score=95.45 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=65.3
Q ss_pred ceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCCCCCCCCcccc
Q 018690 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS 287 (352)
Q Consensus 209 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~ 287 (352)
.=||+|+.|.-.+... . +-..|+||+|++|.|+..||..+++.+ .|-|+|.||.|+|.+....
T Consensus 150 fGTINGlRLGrl~~~~------V-~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~--------- 213 (314)
T PF04111_consen 150 FGTINGLRLGRLPNVP------V-EWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD--------- 213 (314)
T ss_dssp EEEETTEEE--BTTB----------HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred eeeECCeeeccCCCCC------C-ChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence 3489999997654211 1 223599999999999999999999986 5999999999999998631
Q ss_pred cccccCCCCCcccCCccCCC-------chhhHHHHHHHHHHHHHHHH
Q 018690 288 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKVFFIYM 327 (352)
Q Consensus 288 ~~~~~~~~~~r~fPLy~~g~-------d~~rFeYaVfLLNKnI~~L~ 327 (352)
.....||||..+. ...+|+-|+--+=.-+.+++
T Consensus 214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~ 253 (314)
T PF04111_consen 214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLA 253 (314)
T ss_dssp --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHH
T ss_pred -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 1357999998864 24699999988888888777
No 4
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=98.83 E-value=9.9e-08 Score=91.10 Aligned_cols=77 Identities=19% Similarity=0.113 Sum_probs=62.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeecCCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHH
Q 018690 235 QRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAY 314 (352)
Q Consensus 235 e~isaALGyvAhlv~lls~YL~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~g~d~~rFeY 314 (352)
-.+.+||.|++|||++||+||+|.||..|.++ |.+. +.=.+..|..
T Consensus 187 y~i~aAltyt~QLv~lLS~ilnvrlP~kl~~~-------dfC~---------------------------e~ltke~f~R 232 (359)
T KOG4398|consen 187 YPIFAALTYTLQLVHLLSVILNVRLPEKLSHH-------DFCI---------------------------ERLTKESFNR 232 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhccCCchhhcch-------hHHH---------------------------HHhhHHHHHH
Confidence 36899999999999999999999999998554 3331 1113679999
Q ss_pred HHHHHHHHHHHHHhhcC-------ccCCchhchHHHHh
Q 018690 315 AVFLLNKVFFIYMLSSD-------QYCSLTQSQYPLMF 345 (352)
Q Consensus 315 aVfLLNKnI~~L~~sq~-------~~~~l~~~~~~L~~ 345 (352)
+|.=||-||..||.+|| .-|+|-|++|.+=+
T Consensus 233 ~~s~Ln~nIiYLc~~q~v~l~~L~~~htl~NLial~s~ 270 (359)
T KOG4398|consen 233 DWSTLNDNIIYLCIFQGVSLTKLKYTHTLHNLIALASF 270 (359)
T ss_pred HHHHHhhhHHHHHHHhccchhhccccchHHHHHHHhhh
Confidence 99999999999999998 37788888877643
No 5
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=98.08 E-value=0.00072 Score=68.52 Aligned_cols=92 Identities=26% Similarity=0.355 Sum_probs=68.9
Q ss_pred EEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCCCCCCCCcccccc
Q 018690 211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSSNI 289 (352)
Q Consensus 211 tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~~~ 289 (352)
||.|+.|.-.+.... +- +.|.||+|=++.+++.++.=+|+.. +|-+.|+||+|||.-.-
T Consensus 285 tIN~FRLG~lp~~pV----ew---~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~------------- 344 (447)
T KOG2751|consen 285 TINNFRLGRLPSVPV----EW---DEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRM------------- 344 (447)
T ss_pred ccccceeccccCCCc----CH---HHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhc-------------
Confidence 688888765542211 12 3599999999999999999999876 49999999999998663
Q ss_pred cccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHH
Q 018690 290 ALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKVFFIY 326 (352)
Q Consensus 290 ~~~~~~~~r~fPLy~~g~d----~~rFeYaVfLLNKnI~~L 326 (352)
...++++|||.-|+- .++|+-|+-.-=--+.++
T Consensus 345 ----~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf 381 (447)
T KOG2751|consen 345 ----VNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQF 381 (447)
T ss_pred ----cCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHH
Confidence 225789999998763 468888876554444444
No 6
>PRK11637 AmiB activator; Provisional
Probab=92.82 E-value=12 Score=38.21 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (352)
Q Consensus 78 ~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~ 119 (352)
.+.+.+.++......++.....+..+.+++..+++.|..+++
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555666666666666666666654
No 7
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.46 E-value=13 Score=35.23 Aligned_cols=94 Identities=22% Similarity=0.203 Sum_probs=54.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHH
Q 018690 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQ 155 (352)
Q Consensus 76 ~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~ 155 (352)
...+...+.+++..+..++..+.....+++.+..++..|.............+......+.+.+..+..- ...-
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~l 142 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQL------QSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3456666777777777777777778888888888888887333333333344445555555555554321 1122
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 018690 156 KMLRMRQQFMISQVSFLYPV 175 (352)
Q Consensus 156 ~~L~~rR~~l~~qL~~IYPI 175 (352)
...+..-...+..+.-|=++
T Consensus 143 ~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 143 ARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHhCceee
Confidence 22233333446667777555
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.84 E-value=26 Score=34.67 Aligned_cols=123 Identities=22% Similarity=0.319 Sum_probs=58.7
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~-l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~ 119 (352)
+..++..+.++......|+.+|..+=+...+. .....++..++.+|......++. .++...+++.+.+++..++.
T Consensus 172 ~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~----~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 172 LEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA----KKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666554433221 22334555555555555555543 33333444555555555555
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHhhcccccch--HHHHHHHHHHHHHHHHHHHhhhccceee
Q 018690 120 SLLVAGTALSVARKRLQESNRLLAGEKGYGH--LQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (352)
Q Consensus 120 ~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~--L~~l~~~L~~rR~~l~~qL~~IYPI~~~ 178 (352)
.+......+ ...+.+++..+..-++... +..++ .-+..|..+.+++.+
T Consensus 248 ~~~~~k~~l---~~eI~e~~~~~~~~r~~t~~Ev~~Lk--------~~~~~Le~~~gw~~~ 297 (325)
T PF08317_consen 248 ELEEQKQEL---LAEIAEAEKIREECRGWTRSEVKRLK--------AKVDALEKLTGWKIV 297 (325)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHHHCcEEE
Confidence 444443333 3334444444433222211 22222 235666677777765
No 9
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=88.83 E-value=14 Score=31.70 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=66.2
Q ss_pred ehhhhHHHHHH--------HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhcchHHHHHHHHHHHHHHHHHHhhhh
Q 018690 30 EWEDYDQELAR--------LWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRS 100 (352)
Q Consensus 30 ~~~~~~~~L~r--------L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~-l~~~~~l~e~~~rl~~~~~~~~~~~~~~ 100 (352)
+-..|-+.+.. =..++..|+......+.+.++|.+++..+.+. +++...+.+++.-+...+..++.+....
T Consensus 9 d~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~ 88 (132)
T PF10392_consen 9 DPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSY 88 (132)
T ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555 45667777888888888999999999987755 5667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018690 101 KVEKEDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 101 ~~~~~~~~krreeL~~~i~~l~ 122 (352)
++++.+|-..-++++.....|.
T Consensus 89 ~RL~~eV~~Py~~~~~~~~~L~ 110 (132)
T PF10392_consen 89 ERLRSEVIEPYEKIQKLTSQLE 110 (132)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777766666666555433
No 10
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.71 E-value=14 Score=39.81 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018690 153 KLQKMLRMRQQFMISQV 169 (352)
Q Consensus 153 ~l~~~L~~rR~~l~~qL 169 (352)
.+...|..+-.++|..+
T Consensus 320 ~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 320 LTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556667777777766
No 11
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.67 E-value=14 Score=35.49 Aligned_cols=13 Identities=8% Similarity=-0.199 Sum_probs=7.6
Q ss_pred CceEEeceecCCC
Q 018690 208 GSLTILGLHLTIL 220 (352)
Q Consensus 208 ~~~tI~Gl~Lp~~ 220 (352)
....=|++.||..
T Consensus 198 ~~C~GC~m~l~~~ 210 (239)
T COG1579 198 RVCGGCHMKLPSQ 210 (239)
T ss_pred CcccCCeeeecHH
Confidence 3444567777763
No 12
>PRK10869 recombination and repair protein; Provisional
Probab=88.50 E-value=14 Score=39.32 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=18.3
Q ss_pred CCCCcceeehhhhHHHHHHHhcHHHHHHHHHHH
Q 018690 22 DPENVKVIEWEDYDQELARLWSLSSALSQADDK 54 (352)
Q Consensus 22 ~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~ 54 (352)
+.-+++.-+|+++++...+|.|-+.-.+.+...
T Consensus 198 ~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~ 230 (553)
T PRK10869 198 NEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNA 230 (553)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777777766666655444433333
No 13
>PRK09343 prefoldin subunit beta; Provisional
Probab=88.40 E-value=15 Score=31.34 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=50.0
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh--hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 018690 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLK--RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN 109 (352)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~--~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~k 109 (352)
..+++.+.++-.+..-|+.....+..|..++++.--+..+.-. ....+=..-.++ .+ +.-...++..+++
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~v-----lv---~qd~~e~~~~l~~ 78 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNL-----LV---KVDKTKVEKELKE 78 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHH-----Hh---hccHHHHHHHHHH
Confidence 3567777777777777777777777777777665544332211 001110000000 01 1123445566666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018690 110 QEERLSMEVRSLLVAGTALSVARKRLQ 136 (352)
Q Consensus 110 rreeL~~~i~~l~~~~~~l~~a~~~L~ 136 (352)
+.|-+..+|.++......+...-..++
T Consensus 79 r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 79 RKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666666555444333333
No 14
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.89 E-value=18 Score=38.35 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=11.9
Q ss_pred CcceeehhhhHHHHHHHhcHHHH
Q 018690 25 NVKVIEWEDYDQELARLWSLSSA 47 (352)
Q Consensus 25 ~~~~~~~~~~~~~L~rL~~L~~~ 47 (352)
+++.-+|++++....+|.|-+.-
T Consensus 205 ~l~~~E~e~L~~e~~~L~n~e~i 227 (563)
T TIGR00634 205 DLQPGEDEALEAEQQRLSNLEKL 227 (563)
T ss_pred CcCCCcHHHHHHHHHHHhCHHHH
Confidence 34445556666555555554433
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.37 E-value=19 Score=34.12 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
.+..++........+.+|+.+-+...... .++..++.+++..+.+.. +.++...+.++..++|+.++..+...
T Consensus 27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~---~e~~~l~~e~e~L~~~~~----~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 27 QQVQQQWVQAAQQSQKRIDQWDDEKQELL---AEYRQLEREIENLEVYNE----QLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666554332 233333333333333332 23344445555555666666555444
Q ss_pred hh
Q 018690 125 GT 126 (352)
Q Consensus 125 ~~ 126 (352)
..
T Consensus 100 ~~ 101 (251)
T PF11932_consen 100 RQ 101 (251)
T ss_pred HH
Confidence 43
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.11 E-value=53 Score=36.25 Aligned_cols=27 Identities=41% Similarity=0.576 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018690 45 SSALSQADDKKQTLQQKLQSLIQVKAE 71 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~L~~~~~ 71 (352)
..+|++.+.+.+.|+.+|..+...++.
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777777777777777777766653
No 17
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.52 E-value=11 Score=36.78 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=55.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~ 120 (352)
+.+=++.|.++...+..++.+|+++...-.+ .-+..++.+.++...+..+......++.+++.+..|.+-|..+.|+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~---~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEE---IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665553321 2344566666777777777777888889999999999999999986
Q ss_pred HHHHh
Q 018690 121 LLVAG 125 (352)
Q Consensus 121 l~~~~ 125 (352)
+-..|
T Consensus 110 mq~nG 114 (265)
T COG3883 110 MQVNG 114 (265)
T ss_pred HHHcC
Confidence 55443
No 18
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=85.50 E-value=32 Score=35.10 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=13.9
Q ss_pred eeehhhhHHHHHHHhc
Q 018690 28 VIEWEDYDQELARLWS 43 (352)
Q Consensus 28 ~~~~~~~~~~L~rL~~ 43 (352)
-++|+++-.++.||.+
T Consensus 226 ~vsld~L~~~ltrL~~ 241 (370)
T PLN03094 226 GVSLDELVGICTRLAR 241 (370)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3889999999999877
No 19
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.72 E-value=73 Score=37.75 Aligned_cols=86 Identities=9% Similarity=0.108 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 018690 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQ 110 (352)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~kr 110 (352)
+++|+..|..|+..-..+..|.......+++++.+-+... ....++.+++.++..+...+..+........+++..+
T Consensus 853 L~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~---~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~ 929 (1353)
T TIGR02680 853 LKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAR---EAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRAR 929 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655555444455555555555555444333221 1222333333333333334333333333334444444
Q ss_pred HHHHHHHHH
Q 018690 111 EERLSMEVR 119 (352)
Q Consensus 111 reeL~~~i~ 119 (352)
.+++..++.
T Consensus 930 L~e~r~rL~ 938 (1353)
T TIGR02680 930 LAETRAALA 938 (1353)
T ss_pred HHHHHHHHH
Confidence 444444443
No 20
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.51 E-value=22 Score=36.81 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccceeeC
Q 018690 151 LQKLQKMLRMRQQFMISQVSFLYPVKILV 179 (352)
Q Consensus 151 L~~l~~~L~~rR~~l~~qL~~IYPI~~~~ 179 (352)
|..++.+-+.+|.++...|+.+|--...+
T Consensus 103 l~~l~~q~r~qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 103 LNALEVQEREQRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 44455566889999999999999765543
No 21
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=83.39 E-value=57 Score=34.85 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhHHHhhcc--cc---cchHHHHHHHHHHHHHHHHHHHhhhc
Q 018690 127 ALSVARKRLQESNRLLAGE--KG---YGHLQKLQKMLRMRQQFMISQVSFLY 173 (352)
Q Consensus 127 ~l~~a~~~L~ea~~~L~~e--~~---~~~L~~l~~~L~~rR~~l~~qL~~IY 173 (352)
.+-+|-..|.+++..|... .+ ..-++.+...+...|..+...|...|
T Consensus 123 ~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w 174 (593)
T PF06248_consen 123 NYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEW 174 (593)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777642 11 12367888899999999999997666
No 22
>PRK09039 hypothetical protein; Validated
Probab=82.95 E-value=54 Score=32.84 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhhc
Q 018690 157 MLRMRQQFMISQVSFLY 173 (352)
Q Consensus 157 ~L~~rR~~l~~qL~~IY 173 (352)
.|..-|......|..+.
T Consensus 191 ~l~~~~~~~~~~l~~~~ 207 (343)
T PRK09039 191 ELNRYRSEFFGRLREIL 207 (343)
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 44555555555554443
No 23
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.26 E-value=39 Score=36.26 Aligned_cols=81 Identities=25% Similarity=0.248 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018690 43 SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~ 122 (352)
.+.+.|.+|....+....+|+.+++... . .-+++++.++|+...+..... .....+++-...++++.++..+.
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le-~--Dp~~L~~ve~Rl~~L~~l~RK----Y~~~~~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELE-F--DPNRLEEVEERLFALKSLARK----YGVTIEDLLEYLDKIKEELAQLD 338 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHhh
Confidence 3455667777777777777777777542 1 335677777777765554433 33334566666677777776555
Q ss_pred HHhhHHHH
Q 018690 123 VAGTALSV 130 (352)
Q Consensus 123 ~~~~~l~~ 130 (352)
..-..+..
T Consensus 339 ~~~~~~~~ 346 (557)
T COG0497 339 NSEESLEA 346 (557)
T ss_pred hhhhHHHH
Confidence 55443333
No 24
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.20 E-value=53 Score=36.57 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=42.1
Q ss_pred HHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018690 36 QELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (352)
Q Consensus 36 ~~L~rL~~L~~~-iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krree 113 (352)
-.+++...|... |+.|..-......+++.+|+.-.+ ...++++..+.++..+..++..+.+.+...+++++++++
T Consensus 486 ~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~---~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 486 FEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSA---LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777655 677888888888889988886532 233444444444444444443333333333333333333
No 25
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=81.85 E-value=42 Score=32.83 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=42.5
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRL 91 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~ 91 (352)
.+++++..|-.+-|.+++|+.....+++|..+|..+-.. ++ ....+.++++.|..++.
T Consensus 122 ~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k--~P--~s~kl~~LeqELvraEa 179 (271)
T PF13805_consen 122 RLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYK--DP--QSPKLVVLEQELVRAEA 179 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T--TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhc--CC--CChHHHHHHHHHHHHHH
Confidence 467888889999999999999999999999999875332 23 23456666666644333
No 26
>PRK12704 phosphodiesterase; Provisional
Probab=81.28 E-value=79 Score=33.59 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 018690 311 RAAYAVFLLNK 321 (352)
Q Consensus 311 rFeYaVfLLNK 321 (352)
....|..+|.+
T Consensus 382 H~~iGa~il~~ 392 (520)
T PRK12704 382 HVEIGAELAKK 392 (520)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 27
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.37 E-value=45 Score=38.85 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=14.3
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQT 57 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~ 57 (352)
+++..+.+|.|.+..|+.+.-.+.+
T Consensus 1519 ~I~e~v~sL~nVd~IL~~T~~di~r 1543 (1758)
T KOG0994|consen 1519 EIQERVASLPNVDAILSRTKGDIAR 1543 (1758)
T ss_pred HHHHHHHhcccHHHHHHhhhhhHHH
Confidence 4555566666666666655444433
No 28
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.75 E-value=1.1e+02 Score=34.09 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=10.9
Q ss_pred HHHHHHHHHhHHHhhccc
Q 018690 129 SVARKRLQESNRLLAGEK 146 (352)
Q Consensus 129 ~~a~~~L~ea~~~L~~e~ 146 (352)
..|.+.|.||-+.|..|+
T Consensus 152 ~iae~qleEALesl~~ER 169 (717)
T PF09730_consen 152 EIAEKQLEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666666666554
No 29
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.73 E-value=88 Score=33.19 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 018690 312 AAYAVFLL 319 (352)
Q Consensus 312 FeYaVfLL 319 (352)
..+|..+|
T Consensus 377 ~~~Ga~ll 384 (514)
T TIGR03319 377 VEIGAELA 384 (514)
T ss_pred HHHHHHHH
Confidence 33444444
No 30
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.28 E-value=99 Score=33.48 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhh
Q 018690 31 WEDYDQELARLW-SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSM 98 (352)
Q Consensus 31 ~~~~~~~L~rL~-~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~ 98 (352)
|..+.+.+..+. +....+.+...+...++.+|+.+=+.-..+ .....+..+..+++.....+.....
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~-~~~e~i~~l~e~l~~l~~~l~~~~~ 442 (650)
T TIGR03185 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI-PSEEQIAQLLEELGEAQNELFRSEA 442 (650)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433 244455556666666666665554432211 0113444444445444444444333
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.66 E-value=87 Score=35.69 Aligned_cols=106 Identities=22% Similarity=0.247 Sum_probs=60.0
Q ss_pred hHHHHHHHhcHHHH----HHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 018690 34 YDQELARLWSLSSA----LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN 109 (352)
Q Consensus 34 ~~~~L~rL~~L~~~----iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~k 109 (352)
++.+|-||--|.+. +|.+..+-+....+|+++..... +...+++.++..+.-.+..|+... -.+.+.+++..
T Consensus 380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE---~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtd 455 (1243)
T KOG0971|consen 380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKE---RLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTD 455 (1243)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHh
Confidence 34456666555544 33344444555555665555432 234456666666665555554332 35677777777
Q ss_pred HHHHHHHHHHHHHHHhhH---HHHHHHHHHHhHHHhh
Q 018690 110 QEERLSMEVRSLLVAGTA---LSVARKRLQESNRLLA 143 (352)
Q Consensus 110 rreeL~~~i~~l~~~~~~---l~~a~~~L~ea~~~L~ 143 (352)
++-+|..+++.|.+...+ ++.-...|+|++..+.
T Consensus 456 knlnlEekVklLeetv~dlEalee~~EQL~Esn~ele 492 (1243)
T KOG0971|consen 456 KNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELE 492 (1243)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888766665543 3344556666554443
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.55 E-value=68 Score=37.50 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 018690 319 LNKVFFIYM 327 (352)
Q Consensus 319 LNKnI~~L~ 327 (352)
|||-++.++
T Consensus 1736 Le~r~~~vl 1744 (1758)
T KOG0994|consen 1736 LEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHH
Confidence 555555544
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.48 E-value=1.4e+02 Score=35.06 Aligned_cols=74 Identities=15% Similarity=0.327 Sum_probs=38.9
Q ss_pred ehhhhHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 018690 30 EWEDYDQEL-ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (352)
Q Consensus 30 ~~~~~~~~L-~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (352)
+|..-+.+| .+|..+...|+.+....+.++.++..+ .. ..-....++..++..++..+..+..+....+.++..
T Consensus 597 d~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 671 (1201)
T PF12128_consen 597 DYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI-NK--KIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE 671 (1201)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344334344 567778888888887777777766443 11 111233444555555554444444444444333333
No 34
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.32 E-value=41 Score=28.49 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHH
Q 018690 39 ARLWSLSSALSQADDKKQTLQQK 61 (352)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~q 61 (352)
++|++|+.+|.+.+.++..|.++
T Consensus 16 n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHh
Confidence 57789999999999999988555
No 35
>PRK11637 AmiB activator; Provisional
Probab=78.26 E-value=84 Score=32.10 Aligned_cols=9 Identities=33% Similarity=0.261 Sum_probs=3.9
Q ss_pred HHhHhhHHH
Q 018690 237 SATALGYIA 245 (352)
Q Consensus 237 isaALGyvA 245 (352)
.|++=|.|.
T Consensus 343 ~A~~~G~V~ 351 (428)
T PRK11637 343 KAIADGRVL 351 (428)
T ss_pred EecCCeEEE
Confidence 444444443
No 36
>PRK00106 hypothetical protein; Provisional
Probab=78.18 E-value=1e+02 Score=33.02 Aligned_cols=14 Identities=29% Similarity=0.181 Sum_probs=7.9
Q ss_pred ceEEeceecCCCcc
Q 018690 209 SLTILGLHLTILPF 222 (352)
Q Consensus 209 ~~tI~Gl~Lp~~~~ 222 (352)
..|+.-++|||..+
T Consensus 223 e~tvs~v~lp~dem 236 (535)
T PRK00106 223 EQTITTVHLPDDNM 236 (535)
T ss_pred hheeeeEEcCChHh
Confidence 44566666666443
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.94 E-value=68 Score=30.84 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=12.4
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~ 65 (352)
++-.+-||.-.-..+++++.........+|..
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~ 46 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKA 46 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33334444333334444433333333333333
No 38
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=77.46 E-value=87 Score=31.87 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=53.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESL-KRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l-~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i 118 (352)
.|.+|+.-|.........|..+|...++.....- .....+++++..+...-..+.+++..+ ++.+.-..+++..|
T Consensus 19 SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA----~~sE~~V~~it~dI 94 (383)
T PF04100_consen 19 SLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKA----EESEQMVQEITRDI 94 (383)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4678899999999999999999999998654221 123456666666665555555543333 44444555666666
Q ss_pred HHHHHHhh
Q 018690 119 RSLLVAGT 126 (352)
Q Consensus 119 ~~l~~~~~ 126 (352)
+.|-.+++
T Consensus 95 k~LD~AKr 102 (383)
T PF04100_consen 95 KQLDNAKR 102 (383)
T ss_pred HHHHHHHH
Confidence 65544443
No 39
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.38 E-value=37 Score=34.95 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=13.6
Q ss_pred HHhHhhHHHHHHHHHHHHcCCCCC
Q 018690 237 SATALGYIAHVVSLIASYLEVPLR 260 (352)
Q Consensus 237 isaALGyvAhlv~lls~YL~VpLp 260 (352)
++..|..++-++.++|..+++|+|
T Consensus 344 inllL~l~~vlLv~vSt~~~~~~P 367 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVANCPLP 367 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcH
Confidence 445555555566666666665544
No 40
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=76.85 E-value=40 Score=31.36 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccc--cchHHHHHHHHHHHH
Q 018690 89 RRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG--YGHLQKLQKMLRMRQ 162 (352)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~--~~~L~~l~~~L~~rR 162 (352)
++..++..++..+++....+.+-..|++.+.-...-.......++.....-..|..++. ..+|+.++++++.-+
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555556666666666666654333333344444444444445554432 224556666655443
No 41
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.27 E-value=32 Score=31.42 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
+..|..-+.++..++..++++|..+-..
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp ----------------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3445666777777777777776665543
No 42
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=76.22 E-value=91 Score=34.82 Aligned_cols=74 Identities=27% Similarity=0.280 Sum_probs=38.4
Q ss_pred HHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018690 36 QELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (352)
Q Consensus 36 ~~L~rL~~L~~~-iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL 114 (352)
-.+++...+... |..|..-...=..+++.+|+...+ ...++++..+.++.... ..++++++++++++++
T Consensus 491 ~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~---~~~~~e~~~~~~~~~~~-------e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 491 FEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEE---LERELEQKAEEAEALLK-------EAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 346777777655 555666656656677777765432 12233333333333333 3444444555555555
Q ss_pred HHHHH
Q 018690 115 SMEVR 119 (352)
Q Consensus 115 ~~~i~ 119 (352)
..+.+
T Consensus 561 ~~~~~ 565 (782)
T PRK00409 561 QEEED 565 (782)
T ss_pred HHHHH
Confidence 44443
No 43
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=75.17 E-value=1.2e+02 Score=34.91 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=70.4
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-------------hhhcchHHHHHHHHHHHHHHHHHHhhhhH-
Q 018690 36 QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES-------------LKRSNELEEMRERLEARRLLMEKMSMRSK- 101 (352)
Q Consensus 36 ~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~-------------l~~~~~l~e~~~rl~~~~~~~~~~~~~~~- 101 (352)
+.||| +.+|+|.-.+.++|.+.+.+.=+.+--+ ......+++++.+++..+..+.+.....-
T Consensus 398 Qkl~K----~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~ 473 (1041)
T KOG0243|consen 398 QKLMK----KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMN 473 (1041)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555 5678888888888888887654433211 12223445555566655555544333322
Q ss_pred --HHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHhHHHhhc-ccccchHHHHHHHHHHHHHHHHHHHhhhc
Q 018690 102 --VEKEDAKNQEERLSMEV----RSLLVAGTALSVARKRLQESNRLLAG-EKGYGHLQKLQKMLRMRQQFMISQVSFLY 173 (352)
Q Consensus 102 --~~~~~~~krreeL~~~i----~~l~~~~~~l~~a~~~L~ea~~~L~~-e~~~~~L~~l~~~L~~rR~~l~~qL~~IY 173 (352)
..++.+.++++.++..+ ..+....+.+..+...|.+....... +.....+.+....+++.-..+..+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~ 552 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLF 552 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555554444 45555555555555555543333321 11122344445555555566667777776
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.88 E-value=1.1e+02 Score=31.86 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=23.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHH
Q 018690 42 WSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (352)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~ 93 (352)
..|.+-+++.......+...|.++-+...........+.+.+..+...+..+
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555443333222223334444444444433333
No 45
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=72.99 E-value=78 Score=35.32 Aligned_cols=31 Identities=16% Similarity=-0.021 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC----ccCCchhch
Q 018690 310 TRAAYAVFLLNKVFFIYMLSSD----QYCSLTQSQ 340 (352)
Q Consensus 310 ~rFeYaVfLLNKnI~~L~~sq~----~~~~l~~~~ 340 (352)
.+.+.|...|.+=|.......- -+|+.|+..
T Consensus 712 ~~~eeA~~~l~~fl~~a~~~g~~~v~IIHGkGtG~ 746 (782)
T PRK00409 712 MRYEEALERLDKYLDDALLAGYGEVLIIHGKGTGK 746 (782)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCChhH
Confidence 4778888888877766553311 367776543
No 46
>PF15456 Uds1: Up-regulated During Septation
Probab=72.82 E-value=62 Score=27.93 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 21 IDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 21 ~~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
.|+..-.++.|+|++.-=..+..|+.-|.-+..+.. |+..|-++....
T Consensus 11 ~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl 58 (124)
T PF15456_consen 11 GDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSL 58 (124)
T ss_pred HHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466677888999988877777777777777666655 666666555443
No 47
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.65 E-value=62 Score=27.89 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=55.5
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 018690 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (352)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krr 111 (352)
..+++-++++-.|..-++.-...+..++.+|+++-.+..+. ...++=...-..+--.=. ......+..+++.+.
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~El-e~l~eD~~vYk~VG~llv-----k~~k~~~~~eL~er~ 79 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEEL-EKLDEDAPVYKKVGNLLV-----KVSKEEAVDELEERK 79 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccHHHHHhhhHHh-----hhhHHHHHHHHHHHH
Confidence 45788899999999999999999999999888755443221 111111111111111111 112345566666666
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 018690 112 ERLSMEVRSLLVAGTALSVARKRLQ 136 (352)
Q Consensus 112 eeL~~~i~~l~~~~~~l~~a~~~L~ 136 (352)
|.|.-++.++...-+.+..--..|+
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555544443333333
No 48
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=72.46 E-value=1.2e+02 Score=30.90 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=15.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 42 WSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
.++...+.++....++|..+|...|+.
T Consensus 230 ~~I~~~~~~~~~~L~kl~~~i~~~lek 256 (359)
T PF10498_consen 230 KSIESALPETKSQLDKLQQDISKTLEK 256 (359)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666666653
No 49
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=72.28 E-value=82 Score=32.42 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=10.9
Q ss_pred HHHhHhhHHHHHHHHHH
Q 018690 236 RSATALGYIAHVVSLIA 252 (352)
Q Consensus 236 ~isaALGyvAhlv~lls 252 (352)
+++.+++.|.-++.+--
T Consensus 423 rt~~t~~LV~l~~~~wk 439 (455)
T KOG3850|consen 423 RTASTFFLVFLLAFFWK 439 (455)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57778877766555433
No 50
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.86 E-value=55 Score=31.00 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=10.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKL 62 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI 62 (352)
+.+|.++.+. +.|+.+.+.++.+.
T Consensus 120 l~~l~~l~~~-~~~~~~~~~lk~~~ 143 (216)
T KOG1962|consen 120 LRELATLRAN-EKAMKENEALKKQL 143 (216)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHhh
Confidence 4444444444 33444444444443
No 51
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=71.68 E-value=1.3e+02 Score=33.25 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018690 81 EMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137 (352)
Q Consensus 81 e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~e 137 (352)
+++++-......|++++..+.+..+++.+|.+.++..|+.|..+ +++|..+.++
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR---lqaaE~R~ee 630 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR---LQAAERRCEE 630 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 56666666666677777777777777777777777777666554 3344444443
No 52
>PTZ00491 major vault protein; Provisional
Probab=71.07 E-value=75 Score=35.76 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=8.5
Q ss_pred hhHHHHHHhHhhHHHH
Q 018690 231 KKEVQRSATALGYIAH 246 (352)
Q Consensus 231 ~~~~e~isaALGyvAh 246 (352)
++++.-.++|=|.+.|
T Consensus 831 ~sPiNLf~ta~gl~g~ 846 (850)
T PTZ00491 831 KSPINLFNTANGLIGG 846 (850)
T ss_pred CCchhHHhhhhhhhcC
Confidence 3444455666665543
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.04 E-value=1.1e+02 Score=30.18 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 018690 60 QKLQSLIQ 67 (352)
Q Consensus 60 ~qI~~~L~ 67 (352)
..|...|+
T Consensus 148 ~gl~~~L~ 155 (325)
T PF08317_consen 148 EGLKEGLE 155 (325)
T ss_pred HHHHHHHH
Confidence 33333333
No 54
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=70.46 E-value=80 Score=35.22 Aligned_cols=37 Identities=14% Similarity=-0.032 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC-----ccCCchhchHHHHhhh
Q 018690 310 TRAAYAVFLLNKVFFIYMLSSD-----QYCSLTQSQYPLMFSY 347 (352)
Q Consensus 310 ~rFeYaVfLLNKnI~~L~~sq~-----~~~~l~~~~~~L~~~~ 347 (352)
.+++.|+..|.+=|..-+.. | -+|+-|.-.-.=.|..
T Consensus 701 ~~~~eA~~~l~~~ld~a~~~-g~~~v~IIHGkGtG~Lr~~v~~ 742 (771)
T TIGR01069 701 QRSEEALDRLEKFLNDALLA-GYEVVLIIHGKGSGKLRKGVQE 742 (771)
T ss_pred CCHHHHHHHHHHHHHHHHHC-CCCEEEEEcCCChhHHHHHHHH
Confidence 58899999998877766543 2 3666665433333333
No 55
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.04 E-value=1.1e+02 Score=29.06 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018690 100 SKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 135 (352)
Q Consensus 100 ~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L 135 (352)
.+.-++.+++..+.++.++.++......+....+.+
T Consensus 68 L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 68 LEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 56
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=68.23 E-value=1.9e+02 Score=31.69 Aligned_cols=26 Identities=4% Similarity=0.082 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccee
Q 018690 152 QKLQKMLRMRQQFMISQVSFLYPVKI 177 (352)
Q Consensus 152 ~~l~~~L~~rR~~l~~qL~~IYPI~~ 177 (352)
..+..+-..-+..+=+|+...+.|-.
T Consensus 446 ~~V~~~s~~l~~~ie~E~~~f~~~~l 471 (632)
T PF14817_consen 446 EAVAPQSQELRDCIEREVRAFQAIPL 471 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccH
Confidence 35566666667677777777665543
No 57
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.02 E-value=2.1e+02 Score=32.23 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=8.4
Q ss_pred EeceecCCCc
Q 018690 212 ILGLHLTILP 221 (352)
Q Consensus 212 I~Gl~Lp~~~ 221 (352)
+||-++|+..
T Consensus 462 vCg~~l~~~~ 471 (908)
T COG0419 462 VCGQELPEEH 471 (908)
T ss_pred CCCCCCCcHH
Confidence 8999999864
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.67 E-value=1e+02 Score=28.77 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 46 SALSQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~~L 66 (352)
.-+.....+.+.|+.+++++-
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555544433
No 59
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=67.52 E-value=71 Score=34.57 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 57 TLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 123 (352)
Q Consensus 57 ~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~ 123 (352)
..-++++.+|-.|...+..+|+|.-.+..|-...+.+.-.+.-++--++.++..+..|+.+|+.+.+
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEE 364 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEE 364 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888888888887777776666666655555555566666667777777765544
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.44 E-value=1.4e+02 Score=29.75 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 018690 51 ADDKKQTLQQKLQSL 65 (352)
Q Consensus 51 a~~~~~~L~~qI~~~ 65 (352)
.....+.|+.+++.+
T Consensus 177 l~~~~~~L~~e~~~L 191 (312)
T smart00787 177 LRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 61
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.08 E-value=2.1e+02 Score=34.52 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=56.1
Q ss_pred CCcceeehhhhHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhh
Q 018690 24 ENVKVIEWEDYDQELARLWSLSSALSQADD---KKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRS 100 (352)
Q Consensus 24 ~~~~~~~~~~~~~~L~rL~~L~~~iqda~~---~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~ 100 (352)
-..+.-.|...+.-..++-.|..-+.++.. .+.+.++-+.+.-............++....+.+....-+++.....
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1486)
T PRK04863 498 ARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEA 577 (1486)
T ss_pred HHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666677666666666554 33333333333322111112223445555555555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 101 KVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 101 ~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
...+.++..+.++|..+|..+...
T Consensus 578 ~~~~~~~r~~~~qL~~~i~~l~~~ 601 (1486)
T PRK04863 578 RERRMALRQQLEQLQARIQRLAAR 601 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667778888888999988765544
No 62
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=66.49 E-value=1.9e+02 Score=30.97 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=36.1
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i 118 (352)
..+..++..|.++....+.+...|+.+++... .+..++.+++++-+..++.+..-....=.....++++-+++....
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~---~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEE---KNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555432 133344555555554444444333333333444444444444444
No 63
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=66.39 E-value=2.4e+02 Score=32.15 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 43 SLSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
..+-.|..+..+.+.+..++....+
T Consensus 330 ~~~~~~~~~~~e~~~~~~~l~~~~~ 354 (980)
T KOG0980|consen 330 PRELQIEQLSREVAQLKAQLENLKE 354 (980)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhHHH
Confidence 3345566666666666666665554
No 64
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.07 E-value=2.8e+02 Score=32.81 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccceeeCCC
Q 018690 153 KLQKMLRMRQQFMISQVSFLYPVKILVGP 181 (352)
Q Consensus 153 ~l~~~L~~rR~~l~~qL~~IYPI~~~~~~ 181 (352)
.........|..++.+++.-|+|..++.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1311)
T TIGR00606 357 DRHQEHIRARDSLIQSLATRLELDGFERG 385 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCc
Confidence 44555667888999999999998876543
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.97 E-value=2.6e+02 Score=32.46 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=39.7
Q ss_pred eeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 018690 28 VIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESL 73 (352)
Q Consensus 28 ~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l 73 (352)
-+.|-.+-..=+-|.++...|+...+....++.+|+.......+..
T Consensus 270 k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r 315 (1074)
T KOG0250|consen 270 KMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEAR 315 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888889999999999999999999999999988766554
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.92 E-value=1.2e+02 Score=28.43 Aligned_cols=8 Identities=50% Similarity=0.725 Sum_probs=4.5
Q ss_pred EeceecCC
Q 018690 212 ILGLHLTI 219 (352)
Q Consensus 212 I~Gl~Lp~ 219 (352)
|+|+-||.
T Consensus 186 llGlilp~ 193 (206)
T PRK10884 186 LLGLLLPH 193 (206)
T ss_pred HHHHHhcc
Confidence 45566555
No 67
>PRK11281 hypothetical protein; Provisional
Probab=65.70 E-value=1.5e+02 Score=34.73 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=6.1
Q ss_pred hhhhHHHHHHH
Q 018690 31 WEDYDQELARL 41 (352)
Q Consensus 31 ~~~~~~~L~rL 41 (352)
-.+++.+|.-|
T Consensus 62 ~~~l~~tL~~L 72 (1113)
T PRK11281 62 QQDLEQTLALL 72 (1113)
T ss_pred HHHHHHHHHHH
Confidence 45566665444
No 68
>PRK12705 hypothetical protein; Provisional
Probab=65.20 E-value=2e+02 Score=30.73 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=5.9
Q ss_pred HHHHcCCCCCcc
Q 018690 251 IASYLEVPLRYP 262 (352)
Q Consensus 251 ls~YL~VpLpYP 262 (352)
++..||+.-.+|
T Consensus 294 a~~~lgi~~~~~ 305 (508)
T PRK12705 294 VLEELGIFDLKP 305 (508)
T ss_pred HHHHhccccccH
Confidence 444455544444
No 69
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=65.07 E-value=1.6e+02 Score=34.45 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=18.8
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQS 64 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~ 64 (352)
+.+..-.+...++..|.++-...+.++++|+.
T Consensus 59 ~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 59 ERKGSLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333445555555666666666777777664
No 70
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=64.72 E-value=1.2e+02 Score=27.97 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 77 ~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
+++...+.++..+...++.-...+.+..+.+.++..+|..+...+...
T Consensus 78 ~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~ 125 (201)
T PF12072_consen 78 KELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEER 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444444444455555555544444433333
No 71
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.58 E-value=1.5e+02 Score=29.09 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=46.5
Q ss_pred eehhhhHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH----Hhhh----hcchHHHHHHHHHHHHHHHHHHhhh
Q 018690 29 IEWEDYDQEL-ARLWSLSSALSQADDKKQTLQQKLQSLIQVKA----ESLK----RSNELEEMRERLEARRLLMEKMSMR 99 (352)
Q Consensus 29 ~~~~~~~~~L-~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~----~~l~----~~~~l~e~~~rl~~~~~~~~~~~~~ 99 (352)
-=|.++-..+ .+.-+...-+.+-.+....+++.+++-|..-. +... ..-+++..+++++.....--....+
T Consensus 16 ~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~ 95 (333)
T KOG1853|consen 16 QYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQ 95 (333)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466554442 22233334444444444445555444443321 1111 1122333334444333333333344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018690 100 SKVEKEDAKNQEERLSMEVRSLLVAGTALSVA 131 (352)
Q Consensus 100 ~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a 131 (352)
++.-..+....+|+|+..||.|..+...|+.|
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 55555556667777777777666555544443
No 72
>PRK10869 recombination and repair protein; Provisional
Probab=64.52 E-value=2e+02 Score=30.68 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHH
Q 018690 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLME 94 (352)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~ 94 (352)
|..++....+|..+...-++.....+-|+-||+++=+.+-.+ ....++.+...++.-..+..+
T Consensus 163 y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~-gE~eeL~~e~~~L~n~e~i~~ 225 (553)
T PRK10869 163 YQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQP-GEFEQIDEEYKRLANSGQLLT 225 (553)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 566666666777777777888888888888888887654321 222334444444444444333
No 73
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.21 E-value=2.3e+02 Score=33.28 Aligned_cols=10 Identities=10% Similarity=-0.144 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 018690 317 FLLNKVFFIY 326 (352)
Q Consensus 317 fLLNKnI~~L 326 (352)
.|..+|++|-
T Consensus 718 tLV~d~LeQA 727 (1293)
T KOG0996|consen 718 TLVADNLEQA 727 (1293)
T ss_pred hhhhcCHHHH
Confidence 4555555554
No 74
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.15 E-value=83 Score=26.07 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=45.3
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krre 112 (352)
.+++.++++-.+..-++.....+..|..++++.--+..+.-.........+ -+- ...+ ..-...+...++++.+
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk-~VG--~vlv---~~~~~e~~~~l~~r~e 77 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYK-SVG--NLLV---KTDKEEAIQELKEKKE 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH-Hhc--hhhh---eecHHHHHHHHHHHHH
Confidence 456677777777777777777777777777666554432211000000000 000 0011 1123445556666666
Q ss_pred HHHHHHHHHHHHhhHHH
Q 018690 113 RLSMEVRSLLVAGTALS 129 (352)
Q Consensus 113 eL~~~i~~l~~~~~~l~ 129 (352)
.+...|..+......+.
T Consensus 78 ~ie~~i~~lek~~~~l~ 94 (110)
T TIGR02338 78 TLELRVKTLQRQEERLR 94 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666555544443
No 75
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.08 E-value=2e+02 Score=30.48 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=52.2
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh---------------hhhcchHHHHHHHHHHHHHHHHH
Q 018690 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES---------------LKRSNELEEMRERLEARRLLMEK 95 (352)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~---------------l~~~~~l~e~~~rl~~~~~~~~~ 95 (352)
+.++.+.+-..-.|.+=+..+......|+.++....+..... -....+|+++...|.-++..+..
T Consensus 227 l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 227 LEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666667777777777777776622211 12345666666666666666666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Q 018690 96 MSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 96 ~~~~~~~~~~~~~krreeL~~~i 118 (352)
++.....++.++.+.+.++..-.
T Consensus 307 L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655554433
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.92 E-value=2.1e+02 Score=30.75 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018690 48 LSQADDKKQTLQQKLQ 63 (352)
Q Consensus 48 iqda~~~~~~L~~qI~ 63 (352)
+.....+...|..+..
T Consensus 180 L~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 180 LEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444443333
No 77
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.43 E-value=2.5e+02 Score=31.26 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018690 105 EDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 105 ~~~~krreeL~~~i~~l~ 122 (352)
+++..+-+.|..++..+.
T Consensus 603 e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 603 EEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555554443
No 78
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.37 E-value=1.4e+02 Score=31.83 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhccceee
Q 018690 107 AKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (352)
Q Consensus 107 ~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~l~~qL~~IYPI~~~ 178 (352)
..++-|.+..++.++..-.-.-.-+..+...++..--.-...++++.++.+.+..|..-+.|+..=|--.+-
T Consensus 176 ~qkQlE~~edRLEAlaqPrltda~a~~ktd~AQd~r~I~irIgRfkqLelqY~~Vq~k~ikQlWedfd~kQ~ 247 (828)
T KOG4182|consen 176 RQKQLEDFEDRLEALAQPRLTDAFAEGKTDQAQDFRQIFIRIGRFKQLELQYRAVQKKFIKQLWEDFDEKQG 247 (828)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556666666654433222222222332233322222335788999999999999999999988865553
No 79
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=63.09 E-value=61 Score=34.76 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 80 ~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
..+.+.++..+......+.+.+.+++++...+++++..++++..+
T Consensus 215 ~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 215 QKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 334444444444444444455555555555555555555544433
No 80
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=62.99 E-value=81 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 44 LSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
|+.+++......++|+.-|+..++..
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~ 31 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERD 31 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555666666666666666643
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.72 E-value=1e+02 Score=26.52 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 43 SLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
.|++.|.....+...++.+|..+-..+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666665555544
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.62 E-value=1.5e+02 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
||++-=.-+......+..|..+|+.+-...
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~i~~~~~~~ 41 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESEIEELREKK 41 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 444444556667778888888888887763
No 83
>PRK11281 hypothetical protein; Provisional
Probab=62.22 E-value=93 Score=36.26 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHhHHHhhc
Q 018690 125 GTALSVARKRLQESNRLLAG 144 (352)
Q Consensus 125 ~~~l~~a~~~L~ea~~~L~~ 144 (352)
...+.+++.++++.+..|..
T Consensus 162 Q~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777666653
No 84
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.86 E-value=2.5e+02 Score=31.84 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=50.7
Q ss_pred cceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 018690 26 VKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKE 105 (352)
Q Consensus 26 ~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~ 105 (352)
-++++.+.++..- ..+-|..+|.+|..+.+.+-...|++-..+...+..+..+.+ .+.-++.....+..+.+
T Consensus 318 tkylh~enmkltr-qkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e-------~k~nve~elqsL~~l~a 389 (1265)
T KOG0976|consen 318 TKYLHLENMKLTR-QKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE-------KKENVEEELQSLLELQA 389 (1265)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3444444433332 234556666666666666767766665555444333332222 22223333333444445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018690 106 DAKNQEERLSMEVRSLLVAGTALSVARKRLQES 138 (352)
Q Consensus 106 ~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea 138 (352)
+...+.++++..|-.+.....+-++|...|+++
T Consensus 390 erqeQidelKn~if~~e~~~~dhe~~kneL~~a 422 (1265)
T KOG0976|consen 390 ERQEQIDELKNHIFRLEQGKKDHEAAKNELQEA 422 (1265)
T ss_pred HHHHHHHHHHHhhhhhhhccchhHHHHHHHHHH
Confidence 555566666666655544444444444444443
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.85 E-value=1.8e+02 Score=34.40 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=16.4
Q ss_pred ehhhhHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHH
Q 018690 30 EWEDYDQELAR----LWSLSSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 30 ~~~~~~~~L~r----L~~L~~~iqda~~~~~~L~~qI~~~ 65 (352)
.-++++..+.. |..|...+.+.....+.++.+|+.+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555443 3333333344444555555544444
No 86
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=61.54 E-value=75 Score=29.65 Aligned_cols=51 Identities=24% Similarity=0.405 Sum_probs=31.1
Q ss_pred cccCCCCCcceeehhh--hHHHHHHHhcHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 018690 18 SKAIDPENVKVIEWED--YDQELARLWSLSSALSQADDKK--------QTLQQKLQSLIQV 68 (352)
Q Consensus 18 ~~~~~~~~~~~~~~~~--~~~~L~rL~~L~~~iqda~~~~--------~~L~~qI~~~L~~ 68 (352)
.+.||-.++.-=+||+ |+..|..|-.+-+.++.+-.++ .-++.|.+.+|+=
T Consensus 83 ~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~Y 143 (195)
T PF12761_consen 83 EKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDY 143 (195)
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHH
Confidence 3467777788889999 7777755544444444433331 3356777777763
No 87
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.35 E-value=1e+02 Score=26.19 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 43 SLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
+|..-++.....-+.++++|+.+.....
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~ 31 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKS 31 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777776554
No 88
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=60.58 E-value=83 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=22.7
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
|-.++..|+++..++..|..+|+..-+.-.
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888887766543
No 89
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.47 E-value=2.8e+02 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~ 65 (352)
+..+-...++...|+.+++-.
T Consensus 104 da~lrq~eekn~slqerLela 124 (916)
T KOG0249|consen 104 DADLRQNEEKNRSLQERLELA 124 (916)
T ss_pred chhhchhHHhhhhhhHHHHHh
Confidence 334444444444444444433
No 90
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=60.22 E-value=1.3e+02 Score=26.91 Aligned_cols=17 Identities=18% Similarity=0.036 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018690 156 KMLRMRQQFMISQVSFL 172 (352)
Q Consensus 156 ~~L~~rR~~l~~qL~~I 172 (352)
..+...|+.++.++..-
T Consensus 133 ~a~~elk~eii~~~~~~ 149 (167)
T PRK08475 133 KMEREVVEEVLNELFES 149 (167)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455556666666543
No 91
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.10 E-value=1.9e+02 Score=30.83 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=55.3
Q ss_pred hhhHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh----hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 018690 32 EDYDQELARLWS-LSSALSQADDKKQTLQQKLQSLIQVKAESLK----RSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (352)
Q Consensus 32 ~~~~~~L~rL~~-L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~----~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (352)
..+..++..|.+ ++..+++.....+.+..+++++...-..+.. ...+++++++|+........ ....-.++
T Consensus 251 ~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~Lkr----Kyg~s~e~ 326 (563)
T TIGR00634 251 EGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKR----KYGASVEE 326 (563)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----HhCCCHHH
Confidence 334444333333 4555555555555555555544444333222 23456666666665444332 23334567
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHh
Q 018690 107 AKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLL 142 (352)
Q Consensus 107 ~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L 142 (352)
+.+.+++++.++..+......++....++.++++.+
T Consensus 327 l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l 362 (563)
T TIGR00634 327 VLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEEL 362 (563)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 777788888888766655555555555555444433
No 92
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=59.86 E-value=50 Score=26.75 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=35.5
Q ss_pred cceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 26 VKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 26 ~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
.--+.-.+|..-=..|-.|.+||-....+.+.|..++.++|+.+.
T Consensus 20 ~~e~~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 20 DDEFDEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334455666666677778889999999999999999999998765
No 93
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.49 E-value=2.6e+02 Score=30.25 Aligned_cols=37 Identities=5% Similarity=0.252 Sum_probs=32.2
Q ss_pred ehhhhHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHH
Q 018690 30 EWEDYDQELARLWS-LSSALSQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 30 ~~~~~~~~L~rL~~-L~~~iqda~~~~~~L~~qI~~~L 66 (352)
-|.+|+.-|....+ +.+-|.+...+.+.|..+|+++-
T Consensus 218 ~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~e 255 (581)
T KOG0995|consen 218 LEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINERE 255 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38899999999988 88889999999999999999543
No 94
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.48 E-value=3.7e+02 Score=32.06 Aligned_cols=8 Identities=13% Similarity=-0.089 Sum_probs=3.7
Q ss_pred cCCCCCcc
Q 018690 255 LEVPLRYP 262 (352)
Q Consensus 255 L~VpLpYP 262 (352)
|+++--|-
T Consensus 1218 lDyR~w~~ 1225 (1353)
T TIGR02680 1218 LDYRRWHR 1225 (1353)
T ss_pred hchhhheE
Confidence 45444443
No 95
>PHA03246 large tegument protein UL36; Provisional
Probab=59.31 E-value=57 Score=40.65 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=58.4
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHH-HHHHHHHHHhHHhhhhcchH----------HHHHHHHHHHHHHHHHHhhhhHHH
Q 018690 35 DQELARLWSLSSALSQADDKKQTLQ-QKLQSLIQVKAESLKRSNEL----------EEMRERLEARRLLMEKMSMRSKVE 103 (352)
Q Consensus 35 ~~~L~rL~~L~~~iqda~~~~~~L~-~qI~~~L~~~~~~l~~~~~l----------~e~~~rl~~~~~~~~~~~~~~~~~ 103 (352)
..+|.|+..|+.++.++...-.... ..+.+++..-.+.+++...+ ++.++||+.++..++.+....+..
T Consensus 996 ~AELeRF~aLsAAv~~~~d~~~~~~~~~lde~iR~aedlvrqak~l~~~kl~~~Ls~e~R~rl~~Rr~evEtl~~~aR~R 1075 (3095)
T PHA03246 996 LTELERLHELESRIASYTDLETTVDLQKLDEALKLANSIVKLTKGLDGAKLASSLSSDIREKIRQKRSETETLIARLSAR 1075 (3095)
T ss_pred hhHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888877554332111 12222222222222222222 578889999999999988889888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 104 KEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 104 ~~~~~krreeL~~~i~~l~~~ 124 (352)
-++++.+++++=.+++.++.-
T Consensus 1076 ~~eikaar~~~Y~~L~~lLrP 1096 (3095)
T PHA03246 1076 YAEVKAAVDGLYSSIRKLLRP 1096 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999877654
No 96
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.11 E-value=85 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 44 LSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
|..-|+.|..|.+.|+.+|+.+=+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544443
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.45 E-value=3.2e+02 Score=30.97 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=20.4
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 018690 72 SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDA 107 (352)
Q Consensus 72 ~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~ 107 (352)
-.+.+.+++++....++....+.+++++++...+.+
T Consensus 467 ~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655555555555544443
No 98
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.44 E-value=1.1e+02 Score=32.29 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018690 48 LSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~~L~~~ 69 (352)
|...-.+...++.+++.++..|
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N 82 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISEN 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555444
No 99
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=58.00 E-value=3e+02 Score=30.70 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhHHHhh
Q 018690 128 LSVARKRLQESNRLLA 143 (352)
Q Consensus 128 l~~a~~~L~ea~~~L~ 143 (352)
+..+..+|.+.++.|.
T Consensus 146 ~~~~a~~l~~m~~sL~ 161 (766)
T PF10191_consen 146 IAKIADRLAEMQRSLA 161 (766)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555554444
No 100
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.89 E-value=92 Score=24.56 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=23.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 42 WSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
-.|..-|+.|..|..-|+-+|+++=+.+.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677889999999999999888887664
No 101
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.24 E-value=1.4e+02 Score=26.59 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 018690 49 SQADDKKQTLQQKL 62 (352)
Q Consensus 49 qda~~~~~~L~~qI 62 (352)
+....+.+.+...+
T Consensus 91 ~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 91 QQLQEELDQLQERI 104 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 102
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.16 E-value=3e+02 Score=30.22 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 018690 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQ 63 (352)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~ 63 (352)
..++...| .....-..++....+.++.++.
T Consensus 239 L~~l~~ql---~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 239 LAELNTEL---SRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 44444443 3444555555555555555543
No 103
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.88 E-value=2.7e+02 Score=29.63 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=11.4
Q ss_pred CcceeehhhhHHHH
Q 018690 25 NVKVIEWEDYDQEL 38 (352)
Q Consensus 25 ~~~~~~~~~~~~~L 38 (352)
++.|+-|+||+.-+
T Consensus 330 PVpvvGF~dL~~R~ 343 (508)
T KOG3091|consen 330 PVPVVGFEDLRQRL 343 (508)
T ss_pred ceeccchHHHHHHH
Confidence 56788999998876
No 104
>PRK03918 chromosome segregation protein; Provisional
Probab=56.34 E-value=3.2e+02 Score=30.30 Aligned_cols=8 Identities=25% Similarity=0.040 Sum_probs=4.6
Q ss_pred cceeecCC
Q 018690 269 HTYINDYA 276 (352)
Q Consensus 269 rSyI~D~i 276 (352)
.-+|.|.+
T Consensus 814 ~~lilDEp 821 (880)
T PRK03918 814 PLLILDEP 821 (880)
T ss_pred CeEEEeCC
Confidence 34566764
No 105
>PLN03188 kinesin-12 family protein; Provisional
Probab=55.42 E-value=4.3e+02 Score=31.48 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=27.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018690 93 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~ 143 (352)
+..+++..++-++-+++....|+.++|+-.++--+..+---+|.||.+.+.
T Consensus 1164 ~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~ 1214 (1320)
T PLN03188 1164 ISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALT 1214 (1320)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666677777777777544433222222334555544444
No 106
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.05 E-value=4.2e+02 Score=31.35 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=7.9
Q ss_pred hhHHHHHHHhcHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQ 50 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqd 50 (352)
+++..+.+|-+-...+++
T Consensus 469 eL~e~i~~lk~~~~el~~ 486 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQR 486 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=54.90 E-value=3e+02 Score=29.63 Aligned_cols=10 Identities=60% Similarity=0.737 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 018690 128 LSVARKRLQE 137 (352)
Q Consensus 128 l~~a~~~L~e 137 (352)
+..+++.|+|
T Consensus 412 lsE~~rel~E 421 (546)
T PF07888_consen 412 LSENRRELQE 421 (546)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 108
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.47 E-value=90 Score=31.43 Aligned_cols=9 Identities=44% Similarity=1.188 Sum_probs=4.8
Q ss_pred ehhhhHHHH
Q 018690 30 EWEDYDQEL 38 (352)
Q Consensus 30 ~~~~~~~~L 38 (352)
+|++++++-
T Consensus 5 EW~eL~~ef 13 (330)
T PF07851_consen 5 EWEELQKEF 13 (330)
T ss_pred HHHHHHHHH
Confidence 455555554
No 109
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=54.47 E-value=1.5e+02 Score=30.79 Aligned_cols=9 Identities=11% Similarity=0.722 Sum_probs=5.5
Q ss_pred eehhhhHHH
Q 018690 29 IEWEDYDQE 37 (352)
Q Consensus 29 ~~~~~~~~~ 37 (352)
=.|.+|-+.
T Consensus 227 e~W~~fs~~ 235 (421)
T KOG2685|consen 227 ESWAKFSGD 235 (421)
T ss_pred HHHHHhcch
Confidence 368777543
No 110
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=54.36 E-value=3.8e+02 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 018690 100 SKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKR 134 (352)
Q Consensus 100 ~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~ 134 (352)
.+..+.+-+..+.+|+.-...+-.-|.++..+...
T Consensus 405 ~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q 439 (1265)
T KOG0976|consen 405 LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ 439 (1265)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444544444433334333333333
No 111
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.09 E-value=1.8e+02 Score=27.94 Aligned_cols=65 Identities=26% Similarity=0.288 Sum_probs=29.0
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018690 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (352)
Q Consensus 75 ~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~ 143 (352)
...+..+++++...++-.+++ ..+-++++.++.++|+.+...+..+...+...-.+|.+....|.
T Consensus 126 ~v~~~~d~ke~~ee~kekl~E----~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 126 RVPEYMDLKEDYEELKEKLEE----LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 333444444444444444433 22233444444555555555544444444444444544444443
No 112
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=54.09 E-value=2.2e+02 Score=27.86 Aligned_cols=11 Identities=18% Similarity=-0.021 Sum_probs=6.0
Q ss_pred ecCCcceeecC
Q 018690 265 LGGSHTYINDY 275 (352)
Q Consensus 265 ~~gSrSyI~D~ 275 (352)
|.|.-++|...
T Consensus 277 ~~G~V~~Is~~ 287 (346)
T PRK10476 277 FEGKVDSIGWG 287 (346)
T ss_pred EEEEEEEECCc
Confidence 55555566543
No 113
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.93 E-value=64 Score=32.13 Aligned_cols=43 Identities=12% Similarity=0.294 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhHHHhhcccc-cchHHHHHHHHHHHHHHHHHHH
Q 018690 127 ALSVARKRLQESNRLLAGEKG-YGHLQKLQKMLRMRQQFMISQV 169 (352)
Q Consensus 127 ~l~~a~~~L~ea~~~L~~e~~-~~~L~~l~~~L~~rR~~l~~qL 169 (352)
.....+.+|.-|..++.+..+ ..+=...-..+......++++.
T Consensus 271 ~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 271 EIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHH
Confidence 345566677777777765432 1222223345566666666665
No 114
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.73 E-value=3.5e+02 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=20.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
|+.+|..+.+.=+.+...|+++|.+....+.
T Consensus 475 Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~ 505 (697)
T PF09726_consen 475 KLQNLVQARQQDKQSLQQLEKRLAEERRQRA 505 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777767666777777666555443
No 115
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.44 E-value=1e+02 Score=27.79 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=15.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
|.|+.++-..+-...++.+.+..|.+..-+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~ 146 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASE 146 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455555555555555555555555544433
No 116
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=53.43 E-value=2e+02 Score=29.05 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=30.5
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 018690 36 QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRS 76 (352)
Q Consensus 36 ~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~ 76 (352)
..+..+..|+..++....+.++|..+++.++....+..+.+
T Consensus 134 ~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K 174 (342)
T PF06632_consen 134 WCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAK 174 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888888888888888888888887766554333
No 117
>PRK03918 chromosome segregation protein; Provisional
Probab=53.29 E-value=3.5e+02 Score=29.93 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=4.6
Q ss_pred eeehhhhHHH
Q 018690 28 VIEWEDYDQE 37 (352)
Q Consensus 28 ~~~~~~~~~~ 37 (352)
++.++.|+..
T Consensus 154 ~~~~~~~~~~ 163 (880)
T PRK03918 154 ILGLDDYENA 163 (880)
T ss_pred HhCCHHHHHH
Confidence 3444444444
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.17 E-value=2.9e+02 Score=28.83 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=22.1
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
+++.=..|..++..|.+...+..+|+.+|.++=..
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~ 74 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETE 74 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443444555777777777777777777766543
No 119
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=52.87 E-value=3.4e+02 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeCC
Q 018690 155 QKMLRMRQQFMISQVSFLYPVKILVG 180 (352)
Q Consensus 155 ~~~L~~rR~~l~~qL~~IYPI~~~~~ 180 (352)
...|.-+|-.++.||+.+-+|+....
T Consensus 204 ~ndLlDqRD~ll~eLS~~v~i~v~~~ 229 (627)
T PRK06665 204 PNDLLDRRDLLVDKLSSLIDVSIERS 229 (627)
T ss_pred chhhHHHHHHHHHHHHhhcCeEEEEc
Confidence 34688899999999999999998754
No 120
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.23 E-value=1.1e+02 Score=23.57 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 018690 57 TLQQKLQSLIQ 67 (352)
Q Consensus 57 ~L~~qI~~~L~ 67 (352)
.|+++|+.+|.
T Consensus 4 ~Le~kle~Li~ 14 (65)
T TIGR02449 4 ALAAQVEHLLE 14 (65)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 121
>PRK09039 hypothetical protein; Validated
Probab=51.08 E-value=2.7e+02 Score=27.91 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 018690 153 KLQKMLRMRQQFMISQVS 170 (352)
Q Consensus 153 ~l~~~L~~rR~~l~~qL~ 170 (352)
.+...|...-...+.+|.
T Consensus 176 ~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 176 DLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333344443
No 122
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=50.77 E-value=4.6e+02 Score=30.52 Aligned_cols=19 Identities=5% Similarity=-0.116 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 018690 310 TRAAYAVFLLNKVFFIYML 328 (352)
Q Consensus 310 ~rFeYaVfLLNKnI~~L~~ 328 (352)
..|.-+-+-||+|.++.-.
T Consensus 815 ~s~sse~esl~rDl~a~~r 833 (1195)
T KOG4643|consen 815 KSCSSECESLRRDLVATRR 833 (1195)
T ss_pred hhhcchhhhhhhhHHHhhh
Confidence 4677777889999877764
No 123
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=50.61 E-value=3e+02 Score=28.29 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 018690 151 LQKLQKMLRMRQ 162 (352)
Q Consensus 151 L~~l~~~L~~rR 162 (352)
+.++++++...|
T Consensus 375 l~~L~Re~~~~r 386 (458)
T COG3206 375 LRELEREAEAAR 386 (458)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 124
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.37 E-value=4e+02 Score=29.74 Aligned_cols=89 Identities=12% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 018690 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 117 (352)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~-l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~ 117 (352)
..|.++++-|+.-..+..++-.+|.+.+...... ..-..++.+++.-+...-..+.+ .+...++.+.-..+++..
T Consensus 33 qSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~e----iks~ae~Te~~V~eiTrd 108 (793)
T KOG2180|consen 33 QSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQE----IKSVAESTEAMVQEITRD 108 (793)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHH
Confidence 3678889999988888888888888888754322 12223334443333333333322 222233444444555555
Q ss_pred HHHHHHHhhHHHHH
Q 018690 118 VRSLLVAGTALSVA 131 (352)
Q Consensus 118 i~~l~~~~~~l~~a 131 (352)
|..|--|++.+..+
T Consensus 109 IKqLD~AKkNLTtS 122 (793)
T KOG2180|consen 109 IKQLDFAKKNLTTS 122 (793)
T ss_pred HHhhhHHHhhHHHH
Confidence 65555444444433
No 125
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=49.87 E-value=4.8e+02 Score=30.44 Aligned_cols=15 Identities=7% Similarity=-0.268 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHH
Q 018690 311 RAAYAVFLLNKVFFI 325 (352)
Q Consensus 311 rFeYaVfLLNKnI~~ 325 (352)
-|+-++.=|..-++.
T Consensus 658 s~d~~ie~le~e~~~ 672 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASR 672 (1074)
T ss_pred hHhHHHHHHHHHHHH
Confidence 344444444444433
No 126
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=49.87 E-value=1.9e+02 Score=26.22 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018690 109 NQEERLSMEVRSLLVAGTALSVARKRLQES 138 (352)
Q Consensus 109 krreeL~~~i~~l~~~~~~l~~a~~~L~ea 138 (352)
+..+.|+..+.++...-..++....+|+..
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455545555543
No 127
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.61 E-value=3.8e+02 Score=30.93 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690 46 SALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (352)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~ 119 (352)
..|+|+.-=.-.|+.+=+++.+-+....-..+++.+++-|+.++++.+....+......+.++.+.+++.+.++
T Consensus 945 ~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr 1018 (1243)
T KOG0971|consen 945 AEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLR 1018 (1243)
T ss_pred HHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 55666555555555555555555555555677899999999999999987666666666666666667666665
No 128
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=49.53 E-value=4.4e+02 Score=29.93 Aligned_cols=24 Identities=0% Similarity=0.083 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
-.-|+..+.|++.+..+++.+...
T Consensus 881 v~~IK~~~~tq~~~~~~~d~~~~~ 904 (1259)
T KOG0163|consen 881 VKKIKMPRITQREMNSEYDVAVKN 904 (1259)
T ss_pred HHHhcccccchHHHHHHHHHHHHH
Confidence 344444455555555555554443
No 129
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.83 E-value=3.4e+02 Score=28.68 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 018690 54 KKQTLQQKLQSLIQ 67 (352)
Q Consensus 54 ~~~~L~~qI~~~L~ 67 (352)
..++..+..+.++.
T Consensus 348 qlen~k~~~e~~~~ 361 (493)
T KOG0804|consen 348 QLENQKQYYELLIT 361 (493)
T ss_pred HHHhHHHHHHHHHH
Confidence 44444455555554
No 130
>PRK12704 phosphodiesterase; Provisional
Probab=48.78 E-value=3.6e+02 Score=28.70 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018690 151 LQKLQKMLRMRQQFMISQVS 170 (352)
Q Consensus 151 L~~l~~~L~~rR~~l~~qL~ 170 (352)
+..+...++..-..++++.-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (520)
T PRK12704 160 LEKVEEEARHEAAVLIKEIE 179 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666543
No 131
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=48.74 E-value=3.6e+02 Score=28.67 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=10.5
Q ss_pred ceEEeceecCCCccc
Q 018690 209 SLTILGLHLTILPFT 223 (352)
Q Consensus 209 ~~tI~Gl~Lp~~~~~ 223 (352)
..|+.-++||+..++
T Consensus 202 e~~~~~v~lp~d~~k 216 (514)
T TIGR03319 202 ETTVSVVNLPNDEMK 216 (514)
T ss_pred hheeeeEEcCChhhh
Confidence 567777888886544
No 132
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=48.48 E-value=3.3e+02 Score=28.21 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeCC
Q 018690 155 QKMLRMRQQFMISQVSFLYPVKILVG 180 (352)
Q Consensus 155 ~~~L~~rR~~l~~qL~~IYPI~~~~~ 180 (352)
...|.-+|-.++.+|+.+-+|+.+..
T Consensus 192 ~ndL~DqRD~ll~eLS~~v~i~v~~~ 217 (456)
T PRK07191 192 ISDLLDQRDLQIKKLSGLIEVRVVQQ 217 (456)
T ss_pred CchhHHHHHHHHHHHHhhcCeEEEEc
Confidence 34678889999999999999998753
No 133
>PRK14161 heat shock protein GrpE; Provisional
Probab=47.90 E-value=2.1e+02 Score=26.10 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhccceeeC
Q 018690 158 LRMRQQFMISQVSFLYPVKILV 179 (352)
Q Consensus 158 L~~rR~~l~~qL~~IYPI~~~~ 179 (352)
+....+.+..-| .=|+|.++.
T Consensus 104 v~mi~k~l~~vL-~~~Gv~~I~ 124 (178)
T PRK14161 104 VQMTKDELDKVF-HKHHIEEIK 124 (178)
T ss_pred HHHHHHHHHHHH-HHCCCEEec
Confidence 444444444444 456777763
No 134
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=47.83 E-value=2.7e+02 Score=26.91 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018690 49 SQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 49 qda~~~~~~L~~qI~~~L 66 (352)
.....+...++++++...
T Consensus 145 ~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 145 AALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 135
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=47.10 E-value=2.4e+02 Score=26.13 Aligned_cols=12 Identities=0% Similarity=0.205 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 018690 56 QTLQQKLQSLIQ 67 (352)
Q Consensus 56 ~~L~~qI~~~L~ 67 (352)
+.+...|+++-+
T Consensus 82 ~~I~~~L~~Ae~ 93 (205)
T PRK06231 82 ELIEAEINQANE 93 (205)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 136
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.03 E-value=2.8e+02 Score=26.86 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhH-HhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 018690 55 KQTLQQKLQSLIQVKA-ESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (352)
Q Consensus 55 ~~~L~~qI~~~L~~~~-~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (352)
.+-+..+|...+..+. ........+.+++..+..+...+...+...+...+.
T Consensus 44 ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~ 96 (291)
T PF10475_consen 44 LDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADEN 96 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 224444555555555555555554444444444444
No 137
>PLN03086 PRLI-interacting factor K; Provisional
Probab=46.08 E-value=1.3e+02 Score=32.52 Aligned_cols=51 Identities=33% Similarity=0.335 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhH
Q 018690 85 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR-SLLVAGTALSVARKRLQESN 139 (352)
Q Consensus 85 rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~-~l~~~~~~l~~a~~~L~ea~ 139 (352)
|.+.++.+++ +.+++++++.++||++.+.-+ +-+.+..+...|.+..+|..
T Consensus 19 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (567)
T PLN03086 19 RKQRAKLKLE----RERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESL 70 (567)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 467788888999988766553 33444455556666666554
No 138
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=46.00 E-value=1.6e+02 Score=23.70 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQS 64 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~ 64 (352)
...+..+..+...+...|+.
T Consensus 6 ~~~l~~l~~~~~~~~~~~~~ 25 (127)
T smart00502 6 EELLTKLRKKAAELEDALKQ 25 (127)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444444333
No 139
>PRK02224 chromosome segregation protein; Provisional
Probab=44.88 E-value=4.8e+02 Score=29.02 Aligned_cols=6 Identities=33% Similarity=0.185 Sum_probs=3.4
Q ss_pred eeecCC
Q 018690 271 YINDYA 276 (352)
Q Consensus 271 yI~D~i 276 (352)
+|.|.+
T Consensus 815 ~ilDEp 820 (880)
T PRK02224 815 LILDEP 820 (880)
T ss_pred eEecCC
Confidence 456664
No 140
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=44.79 E-value=3.9e+02 Score=27.94 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeCC
Q 018690 155 QKMLRMRQQFMISQVSFLYPVKILVG 180 (352)
Q Consensus 155 ~~~L~~rR~~l~~qL~~IYPI~~~~~ 180 (352)
...|.-+|-.++.+|+.+-+|+.+..
T Consensus 187 ~ndL~DqRD~ll~~LS~~v~i~v~~~ 212 (483)
T PRK07521 187 ASDALDQRDKLLKQISQIVGVTTVTR 212 (483)
T ss_pred chhhHHHHHHHHHHHHhhcCeEEEEe
Confidence 34578889999999999999998753
No 141
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.56 E-value=2.5e+02 Score=29.71 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=15.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 42 WSLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
.+|-..+++...+.+.|.++=+.+.+++
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN 89 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAEN 89 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555565666666666555555544
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.26 E-value=3.3e+02 Score=26.96 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=35.8
Q ss_pred HHHhHhhHHHHHHHHHHHHc--CCCCCcceeecCCcceeecCCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHH
Q 018690 236 RSATALGYIAHVVSLIASYL--EVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAA 313 (352)
Q Consensus 236 ~isaALGyvAhlv~lls~YL--~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~g~d~~rFe 313 (352)
.+-+=|.++.++...+..-- ++.|||.|. .=.|.|. ++...+....++.
T Consensus 241 am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~----~~~I~~~-------------------------si~~~~~~~~~WT 291 (314)
T PF04111_consen 241 AMVAFLDCLQQLAEFVEKRDPQSFELPYKID----KDKIGGV-------------------------SIKLQFNSEEEWT 291 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----SS-EC----TTEECTC-------------------------ES-STTS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccceecc----CCccCCe-------------------------eeeecCCChhHHH
Confidence 45556666777766666544 478999994 2222222 2222333455999
Q ss_pred HHHHHHHHHHHHHH
Q 018690 314 YAVFLLNKVFFIYM 327 (352)
Q Consensus 314 YaVfLLNKnI~~L~ 327 (352)
-|+..|=-|+-|++
T Consensus 292 ~AlK~lLtnlKw~l 305 (314)
T PF04111_consen 292 KALKYLLTNLKWLL 305 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 143
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=43.86 E-value=2.8e+02 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=10.9
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQ 63 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~ 63 (352)
||-.|...+++|....+....+..
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444444433
No 144
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=43.80 E-value=5.9e+02 Score=29.75 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=5.3
Q ss_pred CcceeecCC
Q 018690 268 SHTYINDYA 276 (352)
Q Consensus 268 SrSyI~D~i 276 (352)
|.=||.|.|
T Consensus 1089 aPf~vLDEV 1097 (1163)
T COG1196 1089 APFYVLDEV 1097 (1163)
T ss_pred CCeeeeccc
Confidence 444666766
No 145
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.61 E-value=2.6e+02 Score=25.60 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
-.++..|...+.+.......|+.+|+..-..+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455566667777777777777776665444
No 146
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=43.49 E-value=3.5e+02 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 43 SLSSALSQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~~L 66 (352)
+|.+-|.-++++...=+..||.-|
T Consensus 252 klh~eit~~LEkI~SREK~lNnqL 275 (384)
T KOG0972|consen 252 KLHKEITKALEKIASREKSLNNQL 275 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 147
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=43.45 E-value=1.6e+02 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=23.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
+=|.++...+++...+.+.++.+++.+..+..
T Consensus 19 ~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~ 50 (90)
T PF06103_consen 19 KVLKKLKKTLDEVNKTIDTLQEQVDPITKEIN 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44566677788888888888888877776544
No 148
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=43.44 E-value=2e+02 Score=24.25 Aligned_cols=21 Identities=19% Similarity=0.223 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018690 49 SQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 49 qda~~~~~~L~~qI~~~L~~~ 69 (352)
.+.+.+...|....|++|...
T Consensus 11 ~~l~~el~~L~d~lEevL~ss 31 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSS 31 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555543
No 149
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.31 E-value=4.9e+02 Score=28.67 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 018690 309 ATRAAYAVFLLNKVFFIYM 327 (352)
Q Consensus 309 ~~rFeYaVfLLNKnI~~L~ 327 (352)
...|..++.-|--++...+
T Consensus 508 ~s~~~Ea~r~lrt~l~~~~ 526 (726)
T PRK09841 508 ADSAVEAVRALRTSLHFAM 526 (726)
T ss_pred CCHHHHHHHHHHHHhhhhc
Confidence 3455555555555555544
No 150
>PF13514 AAA_27: AAA domain
Probab=43.17 E-value=5.7e+02 Score=29.63 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc---chHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 018690 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRS---NELEEMRERLEARRLLMEKMSMRSKVEKEDA 107 (352)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~---~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~ 107 (352)
|.++...+..+..+..-|+........+..+++.++..-....... ..+..+..++...+..... ....+...+.+
T Consensus 735 l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~-~~~l~~~~~~~ 813 (1111)
T PF13514_consen 735 LEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEE-RERLQEQLEEL 813 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHH
Q 018690 108 KNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQ 168 (352)
Q Consensus 108 ~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~l~~q 168 (352)
+.+.+++...+..+......+-. ...+.+..+.............+...+..-+..+...
T Consensus 814 ~~~~~~~~~~l~~~~~~l~~L~~-~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~ 873 (1111)
T PF13514_consen 814 EEELEQAEEELEELEAELAELLE-QAGVEDEEELREAEERAEERRELREELEDLERQLERQ 873 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 151
>PHA03247 large tegument protein UL36; Provisional
Probab=43.15 E-value=2.4e+02 Score=36.00 Aligned_cols=90 Identities=26% Similarity=0.320 Sum_probs=60.6
Q ss_pred hHHHHHHHhcHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhHHhhh---hcchH-HHHHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKK-------------------QTLQQKLQSLIQVKAESLK---RSNEL-EEMRERLEARR 90 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~-------------------~~L~~qI~~~L~~~~~~l~---~~~~l-~e~~~rl~~~~ 90 (352)
...+|.|+..|+.++..+...- +.+.+--++++..-+ .+. ..+.| .|.+.||+.++
T Consensus 912 ~~AeL~RF~~LsAAv~qa~~~~~~~~p~~~~~~~~~~~~l~~~~~r~aed~vrqak-~l~~~~~~~~Ls~e~r~rl~~r~ 990 (3151)
T PHA03247 912 GLAELERFEALDAALRQELESEAAFVPAPGAAPYADAGGLSPETRRLAEDALRQAK-AMAAAKLTDELSPEARERLRARA 990 (3151)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhcCcccccccccccccchHHHHHHHHHHHHHHH-HhhhhhhhcccCHHHHHHHHHHH
Confidence 3455888888998888766521 112222233333221 111 11111 58889999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
..++.+....+...++++.+|+++=.+++.++.-
T Consensus 991 ~evEt~~~~aR~r~~~i~~~r~~~y~~L~~lLrP 1024 (3151)
T PHA03247 991 RAIEAMLEEARERAEAARAARERFFQKLQGVLRP 1024 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999877644
No 152
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.06 E-value=4.8e+02 Score=28.46 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 018690 151 LQKLQKMLRMRQQFMISQVSFL 172 (352)
Q Consensus 151 L~~l~~~L~~rR~~l~~qL~~I 172 (352)
+..+-.+|...=.+++.++..|
T Consensus 714 iqsiL~~L~~~i~~~~k~VK~i 735 (741)
T KOG4460|consen 714 IQSILKELGEHIREMVKQVKDI 735 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445566665544
No 153
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.87 E-value=4e+02 Score=27.53 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 44 LSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
+..++++..-..++|+.|+|++++..
T Consensus 249 ~~~~LqEEr~R~erLEeqlNd~~elH 274 (395)
T PF10267_consen 249 ILEALQEERYRYERLEEQLNDLTELH 274 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666543
No 154
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.83 E-value=3.6e+02 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=15.4
Q ss_pred ceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 27 KVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 27 ~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L 66 (352)
+.++.+-++.-| ++..+++..|..+.+.+-
T Consensus 158 ~~~~le~Lq~Kl----------k~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 158 KCIQLEALQEKL----------KSLEEENEQLRSEASQLK 187 (306)
T ss_pred cchhHHHHHHHH----------HHHHHHHHHHHHHHHHhh
Confidence 345555555544 444555555555555444
No 155
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.48 E-value=3.6e+02 Score=26.92 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCcceeehhhhHHHHHHHhc------HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 018690 24 ENVKVIEWEDYDQELARLWS------LSSALSQADDKKQTLQQKLQSLIQVKAESLK 74 (352)
Q Consensus 24 ~~~~~~~~~~~~~~L~rL~~------L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~ 74 (352)
.-...++|+++-..+.++.+ +...+.++.+.-+....+|+.+|+.-.....
T Consensus 134 ~t~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~l~~l~~~~~ 190 (359)
T COG1463 134 RTQVPIDLEDLLGDLLLLLGGLDPDRLNAILNEAAAALAGTGPQLNALLDNLAQFTD 190 (359)
T ss_pred CCcCcccHHHHHHHHHHHhccCCchhhHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 55667899999999877765 5677777777777788888888886654433
No 156
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=41.56 E-value=1.8e+02 Score=27.55 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690 79 LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 79 l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i 118 (352)
++|++..|-.+...++..++ .++++++|+++++..=.
T Consensus 3 ~EELRq~Ll~TTlELE~~k~---~A~EElRk~eeqi~~L~ 39 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKM---EANEELRKREEQIAHLK 39 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45666666666666654333 23556666665554433
No 157
>PRK10698 phage shock protein PspA; Provisional
Probab=41.53 E-value=3e+02 Score=25.78 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
-.+++..|.. +..++..+...+..++++++.+-..-
T Consensus 33 i~em~~~l~~---~r~alA~~~A~~k~~er~~~~~~~~~ 68 (222)
T PRK10698 33 IQEMEDTLVE---VRSTSARALAEKKQLTRRIEQAEAQQ 68 (222)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666644 37778888888888888887766543
No 158
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=41.12 E-value=6.5e+02 Score=29.44 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=6.7
Q ss_pred cceeecC-CcceeecC
Q 018690 261 YPLRLGG-SHTYINDY 275 (352)
Q Consensus 261 YPi~~~g-SrSyI~D~ 275 (352)
|+-.|+| +-.-+.+.
T Consensus 1026 f~~L~~GG~a~L~l~~ 1041 (1163)
T COG1196 1026 FKELFGGGTAELELTE 1041 (1163)
T ss_pred HHHhCCCCeeEEEeCC
Confidence 4444444 44444443
No 159
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.79 E-value=4.7e+02 Score=27.73 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhccceeeCC
Q 018690 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (352)
Q Consensus 156 ~~L~~rR~~l~~qL~~IYPI~~~~~ 180 (352)
..|.-+|-.++.||+.+-+|+.+..
T Consensus 196 ndL~DqRD~ll~eLS~~v~i~v~~~ 220 (547)
T PRK08147 196 NDLLDQRDQLVSELNQIVGVEVSVQ 220 (547)
T ss_pred chhHHHHHHHHHHHHhhcCeEEEEe
Confidence 3688889999999999999998753
No 160
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.74 E-value=2e+02 Score=23.46 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018690 100 SKVEKEDAKNQEERLSMEVRSLLVAGTA 127 (352)
Q Consensus 100 ~~~~~~~~~krreeL~~~i~~l~~~~~~ 127 (352)
...+...++++.+.+...+..+......
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666554444433
No 161
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=40.10 E-value=6.1e+02 Score=28.88 Aligned_cols=9 Identities=0% Similarity=-0.012 Sum_probs=4.7
Q ss_pred ceEEeceec
Q 018690 209 SLTILGLHL 217 (352)
Q Consensus 209 ~~tI~Gl~L 217 (352)
.|-+.+|..
T Consensus 1064 KYDl~~wky 1072 (1259)
T KOG0163|consen 1064 KYDLSKWKY 1072 (1259)
T ss_pred ccccccccH
Confidence 455555543
No 162
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=40.07 E-value=3.1e+02 Score=25.39 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHH
Q 018690 125 GTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQF 164 (352)
Q Consensus 125 ~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~ 164 (352)
......++.+|.+...+|..-+ .|+..|.++|..-|..
T Consensus 129 ~~~a~~AQ~el~eK~qLLeaAk--~Rve~L~~QL~~Ar~D 166 (188)
T PF05335_consen 129 EQVAEGAQQELAEKTQLLEAAK--RRVEELQRQLQAARAD 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3344455566666555555433 3444555555555543
No 163
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.71 E-value=1.7e+02 Score=22.27 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 44 LSSALSQADDKKQTLQQKLQS 64 (352)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~ 64 (352)
|+++|+.=...++.|..+++.
T Consensus 2 lQsaL~~EirakQ~~~eEL~k 22 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTK 22 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 455665555566666666553
No 164
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.61 E-value=4.6e+02 Score=27.48 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKL 62 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI 62 (352)
...+.++..+++.++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 84 EAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 165
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.60 E-value=3.1e+02 Score=25.30 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcchHH
Q 018690 54 KKQTLQQKLQSLIQVKAESLKRSNELE 80 (352)
Q Consensus 54 ~~~~L~~qI~~~L~~~~~~l~~~~~l~ 80 (352)
....|+.+|+.+|.-.........+..
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k 113 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERK 113 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455677777777765543333333333
No 166
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=39.56 E-value=3e+02 Score=28.32 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=10.0
Q ss_pred ccCCchhchHHHHhhhcc
Q 018690 332 QYCSLTQSQYPLMFSYYL 349 (352)
Q Consensus 332 ~~~~l~~~~~~L~~~~~~ 349 (352)
..|++++.++-++-++|-
T Consensus 386 ~~~ai~R~i~Aile~~~~ 403 (418)
T TIGR00414 386 TALAIGRTIVAILENYQT 403 (418)
T ss_pred cchHHHHHHHHHHHHccC
Confidence 345556666666655443
No 167
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.36 E-value=4.3e+02 Score=26.92 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=7.6
Q ss_pred HHHHHHHhhhcccee
Q 018690 163 QFMISQVSFLYPVKI 177 (352)
Q Consensus 163 ~~l~~qL~~IYPI~~ 177 (352)
+.+..|+..+.-+..
T Consensus 211 qDLm~EirnLLQle~ 225 (401)
T PF06785_consen 211 QDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHHhhh
Confidence 344455555555543
No 168
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.12 E-value=6.2e+02 Score=28.64 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 43 SLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
+|++-+++.+...+.|+.+-+++|.+.
T Consensus 438 ~Lq~ql~es~k~~e~lq~kneellk~~ 464 (861)
T PF15254_consen 438 SLQNQLQESLKSQELLQSKNEELLKVI 464 (861)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHH
Confidence 457778888888888887777777654
No 169
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.82 E-value=2.1e+02 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 018690 108 KNQEERLSMEVRSLLV 123 (352)
Q Consensus 108 ~krreeL~~~i~~l~~ 123 (352)
.+++..+..+|..+..
T Consensus 49 r~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 49 RAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHCH
T ss_pred HHHHhHHHHHHHHHhh
Confidence 3333333333333333
No 170
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.26 E-value=4.1e+02 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=15.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
++..|...|+++..+.+.++.+++.+-.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666665554443
No 171
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=38.08 E-value=2.9e+02 Score=24.54 Aligned_cols=12 Identities=8% Similarity=-0.089 Sum_probs=5.5
Q ss_pred CCcceeehhhhH
Q 018690 24 ENVKVIEWEDYD 35 (352)
Q Consensus 24 ~~~~~~~~~~~~ 35 (352)
...-.++|..|-
T Consensus 12 ~~~~~~~~~~~~ 23 (174)
T PRK07352 12 EGGFGLNLNLLE 23 (174)
T ss_pred cCCCCCchhHHH
Confidence 333445555443
No 172
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.83 E-value=2.1e+02 Score=29.54 Aligned_cols=6 Identities=50% Similarity=0.838 Sum_probs=3.1
Q ss_pred HHcCCC
Q 018690 253 SYLEVP 258 (352)
Q Consensus 253 ~YL~Vp 258 (352)
.-|++|
T Consensus 310 ~~Lglp 315 (425)
T PRK05431 310 QKLELP 315 (425)
T ss_pred HHcCCc
Confidence 445555
No 173
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=37.79 E-value=6.2e+02 Score=28.28 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 018690 154 LQKMLRMRQQFMISQVSFLY 173 (352)
Q Consensus 154 l~~~L~~rR~~l~~qL~~IY 173 (352)
+...+..+.-.-|+.+..||
T Consensus 191 Lv~al~~~~~~~~~~~~~if 210 (766)
T PF10191_consen 191 LVQALNSRDVDAAKEYVKIF 210 (766)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 33444444445556666666
No 174
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=37.08 E-value=4.1e+02 Score=26.30 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=5.9
Q ss_pred HHHHHHHHHhHHHh
Q 018690 129 SVARKRLQESNRLL 142 (352)
Q Consensus 129 ~~a~~~L~ea~~~L 142 (352)
..+...+..++..+
T Consensus 168 ~~~~~~l~~~~~~l 181 (370)
T PRK11578 168 KRNQASLDTAKTNL 181 (370)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 175
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.03 E-value=3.9e+02 Score=25.77 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=29.9
Q ss_pred hhhHHHHHH--HhcHH--HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHH
Q 018690 32 EDYDQELAR--LWSLS--SALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (352)
Q Consensus 32 ~~~~~~L~r--L~~L~--~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~ 93 (352)
++++|+|-| |-+|+ ..+-|.++..+.+..++++....+.+. ..++++.+..++..+.++
T Consensus 110 kEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL---~~eleele~e~ee~~erl 172 (290)
T COG4026 110 KELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEEL---LKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 467777755 22222 123366666666666666666554432 234444444444444444
No 176
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=36.96 E-value=4.9e+02 Score=26.86 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=13.2
Q ss_pred eeehhhhHHHHHHHhcHHHHHHHHH
Q 018690 28 VIEWEDYDQELARLWSLSSALSQAD 52 (352)
Q Consensus 28 ~~~~~~~~~~L~rL~~L~~~iqda~ 52 (352)
-+-+.|...-..+|..+..-+..+.
T Consensus 251 e~~~p~~~el~qrLd~l~~RL~~am 275 (432)
T TIGR00237 251 EIVSPNQDELLQRLDGFNVRLHRAF 275 (432)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556655555555543
No 177
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.94 E-value=7.3e+02 Score=28.87 Aligned_cols=149 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred CcccCCCC--CcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHH-----
Q 018690 17 TSKAIDPE--NVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEAR----- 89 (352)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~----- 89 (352)
|-+|.+.+ .+..++..|++... .+|.+++.++..--.+|.+.++.-....+...+-.....++++.
T Consensus 167 TekAig~~~ll~~h~eL~~lr~~e-------~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~ 239 (1072)
T KOG0979|consen 167 TEKAIGAEELLQYHIELMDLREDE-------KSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKK 239 (1072)
T ss_pred HHHhcCchhhHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred --------------HHHHHHHhhhhHHHHHHHHH---HHHHHHHHH----HHHHHHhhHHHHHHHHHHHhHHHhh-----
Q 018690 90 --------------RLLMEKMSMRSKVEKEDAKN---QEERLSMEV----RSLLVAGTALSVARKRLQESNRLLA----- 143 (352)
Q Consensus 90 --------------~~~~~~~~~~~~~~~~~~~k---rreeL~~~i----~~l~~~~~~l~~a~~~L~ea~~~L~----- 143 (352)
+...+.+++..+++.+++.. ++++|..++ .........+.++..++++.-+.+.
T Consensus 240 ~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~ 319 (1072)
T KOG0979|consen 240 WVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDE 319 (1072)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhh
Q 018690 144 GEKGYGHLQKLQKMLRMRQQFMISQVSFL 172 (352)
Q Consensus 144 ~e~~~~~L~~l~~~L~~rR~~l~~qL~~I 172 (352)
.+.....+..++..-..|+.++..-.-.|
T Consensus 320 v~~~~~~le~lk~~~~~rq~~i~~~~k~i 348 (1072)
T KOG0979|consen 320 VEEKKNKLESLKKAAEKRQKRIEKAKKMI 348 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 178
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=36.60 E-value=3.5e+02 Score=25.08 Aligned_cols=10 Identities=10% Similarity=0.517 Sum_probs=4.2
Q ss_pred HHHHHHHHhH
Q 018690 61 KLQSLIQVKA 70 (352)
Q Consensus 61 qI~~~L~~~~ 70 (352)
.|..+|+.|.
T Consensus 77 pI~~vLe~R~ 86 (204)
T PRK09174 77 RIGGIIETRR 86 (204)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 179
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.39 E-value=4.4e+02 Score=26.16 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=9.1
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 018690 76 SNELEEMRERLEARRLLME 94 (352)
Q Consensus 76 ~~~l~e~~~rl~~~~~~~~ 94 (352)
.|+...+.-+|.+.++.+.
T Consensus 104 DNek~~l~yqvd~Lkd~le 122 (302)
T PF09738_consen 104 DNEKSALMYQVDLLKDKLE 122 (302)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544
No 180
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=36.24 E-value=6.7e+02 Score=28.23 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=43.0
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krree 113 (352)
+.+..-++..|...+.-+......-.+ .+.+.+++.+.-++..++-.+++.-.-+..++..+..+.++++.++.+.++.
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777776666555444433 5555555554444444444444444444444444445555555555555444
Q ss_pred HHH
Q 018690 114 LSM 116 (352)
Q Consensus 114 L~~ 116 (352)
++.
T Consensus 186 eem 188 (916)
T KOG0249|consen 186 EKM 188 (916)
T ss_pred HHh
Confidence 443
No 181
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.08 E-value=3.8e+02 Score=25.37 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
-|..+...+..+...+..++.+++......
T Consensus 39 ~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~ 68 (225)
T COG1842 39 ELAKARQALAQAIARQKQLERKLEEAQARA 68 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777777766544
No 182
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=36.08 E-value=5.6e+02 Score=28.04 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhHHHhhcccc----cchHHHHH--------HHHHHHHHHHHHH
Q 018690 103 EKEDAKNQEERLSMEVRSLLVAGT--ALSVARKRLQESNRLLAGEKG----YGHLQKLQ--------KMLRMRQQFMISQ 168 (352)
Q Consensus 103 ~~~~~~krreeL~~~i~~l~~~~~--~l~~a~~~L~ea~~~L~~e~~----~~~L~~l~--------~~L~~rR~~l~~q 168 (352)
..++...+...|+.....+..... .++++..-|.-|.+.|.-++. ...|+... -.+...|+.|..+
T Consensus 393 ~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~D 472 (656)
T PRK06975 393 KLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQD 472 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 334555666666666665553332 244555555555544433221 11233222 2356788889888
Q ss_pred HhhhccceeeC
Q 018690 169 VSFLYPVKILV 179 (352)
Q Consensus 169 L~~IYPI~~~~ 179 (352)
+..+=-+..++
T Consensus 473 i~~L~~~~~~D 483 (656)
T PRK06975 473 IERLKAAPSAD 483 (656)
T ss_pred HHHHhcCCcCC
Confidence 88876666554
No 183
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.52 E-value=6e+02 Score=27.45 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=13.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 42 WSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
.++-..|.++...+.+++.+|..+=+.
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333445555555555555555444433
No 184
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.43 E-value=2.1e+02 Score=27.58 Aligned_cols=35 Identities=11% Similarity=0.403 Sum_probs=17.1
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQS 64 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~ 64 (352)
+|.+|+.++.+-.+..++|.+-.+.-..+..+|++
T Consensus 168 Ey~rfqkeI~~~~tesd~iveEeeed~~l~reiee 202 (264)
T KOG3032|consen 168 EYKRFQKEIQDDLTESDSIVEEEEEDAALTREIEE 202 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666655444444444444333344444333
No 185
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=35.41 E-value=5.7e+02 Score=27.11 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHcCCC
Q 018690 242 GYIAHVVSLIASYLEVP 258 (352)
Q Consensus 242 GyvAhlv~lls~YL~Vp 258 (352)
|..+|++..+.+.|-++
T Consensus 494 g~~~~~~s~~~S~l~~~ 510 (582)
T PF09731_consen 494 GLLGHLLSYLFSLLLFR 510 (582)
T ss_pred CHHHHHHHHHHheeeee
Confidence 78888888888887664
No 186
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.05 E-value=4.2e+02 Score=25.48 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 018690 112 ERLSMEVR 119 (352)
Q Consensus 112 eeL~~~i~ 119 (352)
+++..+++
T Consensus 180 ~~~~~ev~ 187 (243)
T cd07666 180 DLLKEEIE 187 (243)
T ss_pred HHHHHHHH
Confidence 34444443
No 187
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.03 E-value=3.7e+02 Score=24.85 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHhHHh-hhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018690 63 QSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN---QEERLSMEVRSLLVAGTALSVARKRLQES 138 (352)
Q Consensus 63 ~~~L~~~~~~-l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~k---rreeL~~~i~~l~~~~~~l~~a~~~L~ea 138 (352)
|+|...+-+. ...+.++.+|+.+.+.....+.++....+++.+-+.+ .+++|+..+.....-...|..+..++...
T Consensus 19 ndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ 98 (201)
T PF13851_consen 19 NDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKEL 98 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhc
Q 018690 139 NRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLY 173 (352)
Q Consensus 139 ~~~L~~e~~~~~L~~l~~~L~~rR~~l~~qL~~IY 173 (352)
...+.. |+|=...|..+=..+-.+--.+|
T Consensus 99 ek~l~~------Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 99 EKELKD------LKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
No 188
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=34.71 E-value=2.2e+02 Score=22.92 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 018690 34 YDQELAR 40 (352)
Q Consensus 34 ~~~~L~r 40 (352)
++.+|.+
T Consensus 10 v~~sl~~ 16 (97)
T PF09177_consen 10 VQSSLDR 16 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 189
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.69 E-value=4.3e+02 Score=25.52 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=9.5
Q ss_pred CCchhchHHHHhhhc
Q 018690 334 CSLTQSQYPLMFSYY 348 (352)
Q Consensus 334 ~~l~~~~~~L~~~~~ 348 (352)
+.|...+|.+|.+|+
T Consensus 272 ~~l~~~l~~im~sy~ 286 (291)
T PF10475_consen 272 LELLEVLWDIMCSYY 286 (291)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666777776665
No 190
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=34.69 E-value=3e+02 Score=23.83 Aligned_cols=28 Identities=4% Similarity=0.238 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 43 SLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
....-|..+......+...|+.+|+...
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~ 30 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQ 30 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566777777788888888877643
No 191
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.59 E-value=3.8e+02 Score=24.85 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Q 018690 80 EEMRERLEARRLLMEKMSMRSKV 102 (352)
Q Consensus 80 ~e~~~rl~~~~~~~~~~~~~~~~ 102 (352)
.++++.|..++..+....+..++
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~ 56 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKE 56 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455455555444444333
No 192
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=34.47 E-value=2e+02 Score=21.61 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=17.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 96 MSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (352)
Q Consensus 96 ~~~~~~~~~~~~~krreeL~~~i~~l~~~~ 125 (352)
+...-+....-+..++++|...++.+....
T Consensus 49 Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~ 78 (84)
T PF05400_consen 49 ILELDQEIRALLQARRDELKQELRQLRKGR 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666667777777776554443
No 193
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.21 E-value=2.2e+02 Score=23.86 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
..+|..|+.-|.+...+...|+.+|.++++.|+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999998875
No 194
>PLN02320 seryl-tRNA synthetase
Probab=34.14 E-value=2.1e+02 Score=30.42 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=3.8
Q ss_pred Ccceeehh
Q 018690 25 NVKVIEWE 32 (352)
Q Consensus 25 ~~~~~~~~ 32 (352)
+.....|.
T Consensus 57 ~~~~~~~~ 64 (502)
T PLN02320 57 SVARPQWK 64 (502)
T ss_pred cccccccc
Confidence 33445554
No 195
>PRK00106 hypothetical protein; Provisional
Probab=33.87 E-value=6.3e+02 Score=27.18 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018690 151 LQKLQKMLRMRQQFMISQVS 170 (352)
Q Consensus 151 L~~l~~~L~~rR~~l~~qL~ 170 (352)
++.+...++.....++++.-
T Consensus 175 ~~~~~~~~~~~~~~~i~~~e 194 (535)
T PRK00106 175 LAETENKLTHEIATRIREAE 194 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555543
No 196
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.85 E-value=4.9e+02 Score=25.91 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh--hhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQSLIQVKAES--LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAK 108 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~L~~~~~~--l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~ 108 (352)
..--++|..+--.....|+.+.+.-.+. .+....+..+++.+...+..++++....+.++.++.
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777788877777754422 233344455555555555555555555544444443
No 197
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.74 E-value=5.3e+02 Score=26.32 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=14.1
Q ss_pred eeehhhhHHHHHHHhcHHHHHHHHHH
Q 018690 28 VIEWEDYDQELARLWSLSSALSQADD 53 (352)
Q Consensus 28 ~~~~~~~~~~L~rL~~L~~~iqda~~ 53 (352)
-+-+.++.....+|..+...|..+..
T Consensus 256 e~~~~~~~e~~q~Ld~l~~rL~~a~~ 281 (438)
T PRK00286 256 ELAVPDRAELLQRLQQLQQRLARAMR 281 (438)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666665555555433
No 198
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=33.57 E-value=2.5e+02 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 018690 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDA 107 (352)
Q Consensus 77 ~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~ 107 (352)
...+.+..+++..++.++.+.++...+..++
T Consensus 444 v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq 474 (486)
T KOG2185|consen 444 VVSEALQERLKEVRKALASLLAQEAALSNEQ 474 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445556666666666666555554444443
No 199
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.38 E-value=5.7e+02 Score=26.57 Aligned_cols=6 Identities=33% Similarity=0.174 Sum_probs=2.8
Q ss_pred eeecCC
Q 018690 271 YINDYA 276 (352)
Q Consensus 271 yI~D~i 276 (352)
+|.|.+
T Consensus 500 lilDEp 505 (562)
T PHA02562 500 LILDEV 505 (562)
T ss_pred EEEecc
Confidence 344553
No 200
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.36 E-value=3.8e+02 Score=27.53 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
+-+|..|+.-..++..+.+.|+++.|.+-..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~ 59 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQ 59 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 201
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.35 E-value=6.2e+02 Score=27.00 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=13.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
|..+...|..+....+.+...++.+++.
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~l~~l~~~ 134 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEELQELLES 134 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 202
>PHA03332 membrane glycoprotein; Provisional
Probab=32.96 E-value=8.8e+02 Score=28.59 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=12.6
Q ss_pred EeceecCCCccccccCCCChhHHHHHHhHhhH
Q 018690 212 ILGLHLTILPFTKMSLFTDKKEVQRSATALGY 243 (352)
Q Consensus 212 I~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGy 243 (352)
+.|-|+.+. ++.|+.+...+.+.+|.
T Consensus 1021 L~GCP~~~p------fl~dnpdy~mv~SVyga 1046 (1328)
T PHA03332 1021 LAGCPTDAP------FLRDNPDYTMVKSVYGA 1046 (1328)
T ss_pred ccCCCCCCh------hhhcCCcchhhhhhhhh
Confidence 566676553 33344333344455553
No 203
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=32.51 E-value=4.8e+02 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 47 ALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 47 ~iqda~~~~~~L~~qI~~~L~ 67 (352)
-+|..+-..+.|.+|++++.+
T Consensus 165 eLqkr~~~v~~l~~q~~k~~~ 185 (289)
T COG4985 165 ELQKRLLEVETLRDQVDKMVE 185 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544443
No 204
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.36 E-value=4.2e+02 Score=24.75 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=36.5
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH--hHHhhhhcchHHHHHHHHHHHHHHHH
Q 018690 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV--KAESLKRSNELEEMRERLEARRLLME 94 (352)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~--~~~~l~~~~~l~e~~~rl~~~~~~~~ 94 (352)
.+.+..-.+...+...|.+|=.....+..+|+.+-.. .....-..-.+++++.++......+.
T Consensus 31 ~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~ 95 (240)
T PF12795_consen 31 DEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQ 95 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHH
Confidence 4444445566667777888888888888888877554 11111122245566666655544443
No 205
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.10 E-value=6.1e+02 Score=26.48 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 48 LSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~~L~~ 68 (352)
+...-+.+..|..|..++...
T Consensus 153 l~~l~~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 153 LKTLAEQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555554443
No 206
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.82 E-value=9.1e+02 Score=28.41 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=8.2
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 018690 76 SNELEEMRERLEARRLLME 94 (352)
Q Consensus 76 ~~~l~e~~~rl~~~~~~~~ 94 (352)
.+.+++++.+++..+....
T Consensus 351 ~~~l~~~~~~~~~l~~~~~ 369 (1201)
T PF12128_consen 351 VDQLPEWRNELENLQEQLD 369 (1201)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 207
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=31.67 E-value=6.1e+02 Score=27.05 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018690 50 QADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 50 da~~~~~~L~~qI~~~L~~ 68 (352)
|+.-..+.|..-|..+|.+
T Consensus 496 da~SS~eTll~niq~llkv 514 (641)
T KOG3915|consen 496 DALSSIETLLTNIQGLLKV 514 (641)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 4455555566666666654
No 208
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.61 E-value=3.4e+02 Score=23.41 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 018690 53 DKKQTLQQKLQSLI 66 (352)
Q Consensus 53 ~~~~~L~~qI~~~L 66 (352)
..-..|+.++..++
T Consensus 13 ~q~QqLq~ql~~~~ 26 (119)
T COG1382 13 AQLQQLQQQLQKVI 26 (119)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 209
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.53 E-value=4.2e+02 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=14.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
+|..|+.-..++..+.+.|+++.|.+=.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk 56 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSK 56 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554443
No 210
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.50 E-value=3e+02 Score=22.81 Aligned_cols=64 Identities=17% Similarity=0.350 Sum_probs=30.5
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL 114 (352)
+|..+..|..+.++.+...+.|...=.. ..++...++.-+..+.....+...++.+.+..++++
T Consensus 20 l~~qs~~i~~L~a~n~~q~~tI~qq~~~----------~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~i 83 (110)
T PF10828_consen 20 LWYQSQRIDRLRAENKAQAQTIQQQEDA----------NQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESI 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666555433322 222333444444555544444434444444444433
No 211
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.49 E-value=3.6e+02 Score=23.61 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=43.0
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~ 95 (352)
+-+++..|.-.+..-++++......+..+|.++=..+. ..-++++.++.+|..++..++.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~---~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQ---QLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777788888888888888888888766553 2345677777777777766654
No 212
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.47 E-value=5.6e+02 Score=26.37 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 018690 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (352)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krr 111 (352)
.++.+...+.-.=..-++++..+.+.++.++.+.+...................+......+....+..+.....+.++.
T Consensus 261 ~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~ 340 (498)
T TIGR03007 261 KQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARI 340 (498)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018690 112 ERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (352)
Q Consensus 112 eeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~ 143 (352)
++++.++..+-.....+..-++++..++..+.
T Consensus 341 ~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 341 ERLESLLRTIPEVEAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
No 213
>PHA02047 phage lambda Rz1-like protein
Probab=31.37 E-value=2.3e+02 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018690 86 LEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (352)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~krreeL 114 (352)
|+..+..+..+..+.+.++...++++.|+
T Consensus 43 LE~a~~r~~~~Q~~V~~l~~kae~~t~Ei 71 (101)
T PHA02047 43 LEALEVRYATLQRHVQAVEARTNTQRQEV 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 214
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.22 E-value=3.9e+02 Score=23.99 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018690 102 VEKEDAKNQEERLSMEV 118 (352)
Q Consensus 102 ~~~~~~~krreeL~~~i 118 (352)
++..++..++..+.+++
T Consensus 88 ~~~a~~~~~~~~~ea~L 104 (155)
T PRK06569 88 SLESEFLIKKKNLEQDL 104 (155)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344333333
No 215
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.22 E-value=7.6e+02 Score=27.32 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 018690 315 AVFLLNKVFFIYMLSS 330 (352)
Q Consensus 315 aVfLLNKnI~~L~~sq 330 (352)
.|...|..|.-||.+.
T Consensus 447 ~~EIYNe~i~DlL~~~ 462 (670)
T KOG0239|consen 447 MLEIYNEAIRDLLSDE 462 (670)
T ss_pred hhHHHHHHHHHhcccc
Confidence 4566788888887654
No 216
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=30.87 E-value=7.5e+02 Score=27.15 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhccceeeCC
Q 018690 157 MLRMRQQFMISQVSFLYPVKILVG 180 (352)
Q Consensus 157 ~L~~rR~~l~~qL~~IYPI~~~~~ 180 (352)
.|.-+|-.++.||+.+-+|+.+..
T Consensus 190 dLlDqRD~ll~eLS~~v~v~v~~~ 213 (649)
T PRK12715 190 ELLDHRDELLKQLSGYTDLSIFDQ 213 (649)
T ss_pred HhHHHHHHHHHHHHhhcCeEEEEc
Confidence 688899999999999999998743
No 217
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=30.09 E-value=9.7e+02 Score=28.22 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=7.4
Q ss_pred ceeehhhhHHHH
Q 018690 27 KVIEWEDYDQEL 38 (352)
Q Consensus 27 ~~~~~~~~~~~L 38 (352)
+-+.-.++++.|
T Consensus 100 ~~~s~~~Leq~l 111 (1109)
T PRK10929 100 PNMSTDALEQEI 111 (1109)
T ss_pred ccCCHHHHHHHH
Confidence 444457777765
No 218
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=29.78 E-value=5.1e+02 Score=24.87 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQK 61 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~q 61 (352)
...+..+......++.+
T Consensus 86 ~a~l~~~~~~~~~~~~~ 102 (334)
T TIGR00998 86 EANLAALVRQTKQLEIT 102 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 219
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.73 E-value=1.1e+03 Score=28.72 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=16.2
Q ss_pred HHHhHhhHHH---------HHHHHHHHHcCCC
Q 018690 236 RSATALGYIA---------HVVSLIASYLEVP 258 (352)
Q Consensus 236 ~isaALGyvA---------hlv~lls~YL~Vp 258 (352)
.++|+||-.. ++...|.+.-++|
T Consensus 701 ~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~p 732 (1486)
T PRK04863 701 YFSALYGPARHAIVVPDLSDAAEQLAGLEDCP 732 (1486)
T ss_pred HHHHHHHhhhCeEEeCCHHHHHHHHHhccCCc
Confidence 4778887654 4667788888866
No 220
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.46 E-value=7.7e+02 Score=26.82 Aligned_cols=10 Identities=0% Similarity=0.166 Sum_probs=4.9
Q ss_pred hhhhHHHHHH
Q 018690 31 WEDYDQELAR 40 (352)
Q Consensus 31 ~~~~~~~L~r 40 (352)
|.++++.+-+
T Consensus 268 ~~~L~~D~nK 277 (581)
T KOG0995|consen 268 KARLQDDVNK 277 (581)
T ss_pred HHHHHhHHHH
Confidence 4555555533
No 221
>PRK11519 tyrosine kinase; Provisional
Probab=29.44 E-value=5.9e+02 Score=28.02 Aligned_cols=103 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS----------MRSKVEKEDAKN 109 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~----------~~~~~~~~~~~k 109 (352)
+|-.+...+.++....+..+.+ +.++.-..+.......+.+.+.++...+....++. ..++...+.+++
T Consensus 275 ql~~l~~~L~~aE~~l~~fr~~-~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~ 353 (719)
T PRK11519 275 QLPEVRSRLDVAENKLNAFRQD-KDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALED 353 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018690 110 QEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (352)
Q Consensus 110 rreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~ 143 (352)
+.++++.++..+-.....+..-+++..-++....
T Consensus 354 ~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~ 387 (719)
T PRK11519 354 EKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYM 387 (719)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
No 222
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.24 E-value=7.9e+02 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhccceeeCC
Q 018690 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (352)
Q Consensus 156 ~~L~~rR~~l~~qL~~IYPI~~~~~ 180 (352)
..|.-+|-.++.||+.+-+|+.+..
T Consensus 195 ndLlDqRD~ll~eLS~~v~i~v~~~ 219 (651)
T PRK06945 195 NDLLDQRDQLVSELSKLVGVTVVQQ 219 (651)
T ss_pred chhHHHHHHHHHHHHhhcCeEEEEc
Confidence 3578889999999999999998854
No 223
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=29.17 E-value=3.2e+02 Score=27.58 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018690 60 QKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 135 (352)
Q Consensus 60 ~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L 135 (352)
+-|++|+...-.. .+ .-.....|.+..+..+..+...++++.+++..-.+.-+.+.+...+...+|+...+++
T Consensus 200 rLIsei~SesvVp--Dv-rsVVtt~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~ 272 (410)
T KOG4715|consen 200 RLISEILSESVVP--DV-RSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRL 272 (410)
T ss_pred HHHHHHhcccccc--ch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 3466677543111 11 2233445666677777888888888888887666666667777777766665544443
No 224
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.11 E-value=5.6e+02 Score=25.09 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=36.6
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN 109 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~k 109 (352)
+....++--..|.+.-++|-|++.+--.+...-...+. ..-++.+++..+..+...+.....+.+.....+.+
T Consensus 118 dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~-------r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~ 190 (267)
T PF10234_consen 118 DLKAARQLASEITQRGASLYDLLGKEVELREERQRALA-------RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLAS 190 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc-------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555544444444333333 33344555555544444444433444444444444
Q ss_pred HHHHHHHHH
Q 018690 110 QEERLSMEV 118 (352)
Q Consensus 110 rreeL~~~i 118 (352)
....|..+|
T Consensus 191 de~~Le~KI 199 (267)
T PF10234_consen 191 DEANLEAKI 199 (267)
T ss_pred HHHHHHHHH
Confidence 444444444
No 225
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.68 E-value=3.2e+02 Score=22.12 Aligned_cols=6 Identities=17% Similarity=0.634 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018690 62 LQSLIQ 67 (352)
Q Consensus 62 I~~~L~ 67 (352)
++.+++
T Consensus 28 vd~i~~ 33 (108)
T PF02403_consen 28 VDEIIE 33 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 226
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=28.62 E-value=1.3e+03 Score=29.09 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 018690 154 LQKMLRMRQQFMISQVSFL 172 (352)
Q Consensus 154 l~~~L~~rR~~l~~qL~~I 172 (352)
....+...|+.|..++..+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666554
No 227
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=28.54 E-value=4.2e+02 Score=23.51 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 018690 57 TLQQKLQSL 65 (352)
Q Consensus 57 ~L~~qI~~~ 65 (352)
.+...+++.
T Consensus 53 ~I~~~l~~A 61 (175)
T PRK14472 53 GIQSSIDRA 61 (175)
T ss_pred HHHHHHHHH
Confidence 333333333
No 228
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=28.34 E-value=4.2e+02 Score=23.49 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 018690 56 QTLQQKLQSLIQ 67 (352)
Q Consensus 56 ~~L~~qI~~~L~ 67 (352)
+.+...|++.-+
T Consensus 50 ~~I~~~l~~Ae~ 61 (173)
T PRK13460 50 SGVQNDINKASE 61 (173)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 229
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.26 E-value=1e+03 Score=27.89 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=9.3
Q ss_pred CCCcccCCCCCcceeehhhhHH
Q 018690 15 TSTSKAIDPENVKVIEWEDYDQ 36 (352)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (352)
|-|..+.+.-+-.+++..++..
T Consensus 660 tlTGGs~~~~a~~L~~l~~l~~ 681 (1174)
T KOG0933|consen 660 TLTGGSRSKGADLLRQLQKLKQ 681 (1174)
T ss_pred cccCCCCCCcccHHHHHHHHHH
Confidence 3344444444444444444433
No 230
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.22 E-value=4e+02 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 018690 100 SKVEKEDAKNQEERLSMEVRSL 121 (352)
Q Consensus 100 ~~~~~~~~~krreeL~~~i~~l 121 (352)
++.+-+.+...|++|..+|..+
T Consensus 52 l~~vs~~l~~tKkhLsqRId~v 73 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRV 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 231
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=28.04 E-value=5.5e+02 Score=24.69 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.0
Q ss_pred eecCCcceeec
Q 018690 264 RLGGSHTYIND 274 (352)
Q Consensus 264 ~~~gSrSyI~D 274 (352)
.|.|.-.+|..
T Consensus 270 ~~~g~V~~Is~ 280 (327)
T TIGR02971 270 PLRGTVRRIGS 280 (327)
T ss_pred cEEEEEEEecc
Confidence 34444445543
No 232
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.02 E-value=8.6e+02 Score=28.46 Aligned_cols=24 Identities=13% Similarity=0.343 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
.+-|+|..++..+|.+.|.+.+..
T Consensus 204 r~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 204 RNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554443
No 233
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=27.89 E-value=4.6e+02 Score=23.79 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.4
Q ss_pred hHHHHHHHhcHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQ 50 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqd 50 (352)
+-+.|..+......+.+
T Consensus 80 l~~~l~~l~~~~~~~~~ 96 (236)
T PF09325_consen 80 LSEALSQLAEAFEKISE 96 (236)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 234
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=27.73 E-value=4e+02 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=13.4
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~ 65 (352)
++.+.+--++.|=...+.-...++.|..++..+
T Consensus 32 ~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l 64 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQRDRDMEQREDLSDKLRRL 64 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333344444444444444333
No 235
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=27.65 E-value=5.4e+02 Score=24.44 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018690 86 LEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 129 (352)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~ 129 (352)
+......+.++......+...+..++++|..-+..+....+.+.
T Consensus 183 l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~ 226 (291)
T TIGR00996 183 LNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLA 226 (291)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555556666666655554444443333
No 236
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.54 E-value=6e+02 Score=25.93 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHH
Q 018690 55 KQTLQQKLQSLIQVKAESLKRSNELEEMRERLE 87 (352)
Q Consensus 55 ~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~ 87 (352)
.+++.+.++++=....+-....+++++++++|+
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLE 259 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLE 259 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Confidence 333444444333333222333344444444444
No 237
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.36 E-value=7.8e+02 Score=26.25 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=4.4
Q ss_pred hhhhHHHHHH
Q 018690 31 WEDYDQELAR 40 (352)
Q Consensus 31 ~~~~~~~L~r 40 (352)
-+|++..+.|
T Consensus 9 ~edl~~~I~~ 18 (593)
T PF06248_consen 9 KEDLRKSISR 18 (593)
T ss_pred HhHHHHHHHH
Confidence 3444444433
No 238
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.33 E-value=2.1e+02 Score=30.33 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018690 47 ALSQADDKKQTLQQKLQS 64 (352)
Q Consensus 47 ~iqda~~~~~~L~~qI~~ 64 (352)
++.+...+...|+++|++
T Consensus 70 ALteqQ~kasELEKqLaa 87 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEE 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 239
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.19 E-value=4.6e+02 Score=23.48 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 018690 55 KQTLQQKLQSLIQ 67 (352)
Q Consensus 55 ~~~L~~qI~~~L~ 67 (352)
++.+...|++.-+
T Consensus 60 ~~~I~~~l~~Ae~ 72 (184)
T PRK13455 60 AEGIRSELEEARA 72 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 240
>PHA03332 membrane glycoprotein; Provisional
Probab=27.14 E-value=7.4e+02 Score=29.14 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=10.7
Q ss_pred hcHHHHHHHHHHHHHHHHHH
Q 018690 42 WSLSSALSQADDKKQTLQQK 61 (352)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~q 61 (352)
..|.++|+++.+..++++..
T Consensus 894 a~mksaIg~tNaAV~~lsDa 913 (1328)
T PHA03332 894 AEMASKIGGLNARVDKTSDV 913 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555553
No 241
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.97 E-value=3.9e+02 Score=22.65 Aligned_cols=27 Identities=4% Similarity=0.044 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 98 MRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 98 ~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
..++..+..+.++..+|+++|.++...
T Consensus 47 ~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 47 QSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666554443
No 242
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.90 E-value=6.7e+02 Score=25.29 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=12.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHH
Q 018690 39 ARLWSLSSALSQADDKKQTLQQK 61 (352)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~q 61 (352)
.+|..|...+..+.........+
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655554444333
No 243
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.72 E-value=1e+03 Score=27.30 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=27.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 76 ~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
..+++..+++++..-..+.....-....+-.+..++++|+..|.++...
T Consensus 552 ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~ 600 (1480)
T COG3096 552 AEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQR 600 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555544433333333334445556777888999988765544
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.57 E-value=8.9e+02 Score=26.64 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=6.9
Q ss_pred HHHHHHHhhhccc
Q 018690 163 QFMISQVSFLYPV 175 (352)
Q Consensus 163 ~~l~~qL~~IYPI 175 (352)
+..+..+-.-|.|
T Consensus 530 ~~~Ie~~e~~~gi 542 (652)
T COG2433 530 LEAIEEAEEEYGI 542 (652)
T ss_pred HHHHHhHHHhhcc
Confidence 3445555555555
No 245
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.48 E-value=3.4e+02 Score=21.80 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=21.5
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
|--|..=||.|..|..-|+-+|+++=+.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888888888888777776653
No 246
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.45 E-value=5e+02 Score=26.49 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690 89 RRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~krreeL~~~i 118 (352)
++..+...++..+..++.++.+...|+..+
T Consensus 240 t~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 240 TEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333333334333333333333
No 247
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.30 E-value=4.1e+02 Score=22.63 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=13.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 42 WSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
.+|.+-++.+.........++..+.+.
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~d 32 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLRED 32 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544443
No 248
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.23 E-value=6.6e+02 Score=24.99 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=24.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAES 72 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~ 72 (352)
+...|...+.+....++.|..+++++-+.+.+.
T Consensus 14 K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdel 46 (294)
T COG1340 14 KRKQLKEEIEELKEKRDELRKEASELAEKRDEL 46 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667778888888888888888877766443
No 249
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.16 E-value=1e+03 Score=27.21 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcCccCCc-hhchH
Q 018690 320 NKVFFIYMLSSDQYCSL-TQSQY 341 (352)
Q Consensus 320 NKnI~~L~~sq~~~~~l-~~~~~ 341 (352)
-||=+|-..++|++-++ |-|-|
T Consensus 935 ekdgeww~gt~~~r~gifPan~y 957 (1118)
T KOG1029|consen 935 EKDGEWWTGTCGDREGIFPANYY 957 (1118)
T ss_pred eccCceeccccCCccccccccce
Confidence 45666666666665555 44433
No 250
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=26.14 E-value=8e+02 Score=25.98 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018690 51 ADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 51 a~~~~~~L~~qI~~~L~ 67 (352)
.....++....|+.+-+
T Consensus 314 L~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 314 LRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 251
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.02 E-value=8.8e+02 Score=26.40 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKL 62 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI 62 (352)
..-|+++....+.+..+|
T Consensus 334 ~~~l~~l~~~i~~~~~~~ 351 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEI 351 (594)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444433333333
No 252
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=25.96 E-value=1.2e+03 Score=27.89 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=6.0
Q ss_pred cCCchhchHHHH
Q 018690 333 YCSLTQSQYPLM 344 (352)
Q Consensus 333 ~~~l~~~~~~L~ 344 (352)
.|.+|..-+...
T Consensus 936 ~~~i~~~E~e~~ 947 (1317)
T KOG0612|consen 936 KCKLLSEEKERL 947 (1317)
T ss_pred hcCCchhhhhhh
Confidence 555654444433
No 253
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.83 E-value=2.4e+02 Score=29.87 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 018690 109 NQEERLSMEVR 119 (352)
Q Consensus 109 krreeL~~~i~ 119 (352)
+++++++.+|.
T Consensus 97 aq~~dle~KIk 107 (475)
T PRK13729 97 KQRGDDQRRIE 107 (475)
T ss_pred hhhhhHHHHHH
Confidence 44455544444
No 254
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=25.68 E-value=5.9e+02 Score=24.27 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 018690 55 KQTLQQKLQSLIQ 67 (352)
Q Consensus 55 ~~~L~~qI~~~L~ 67 (352)
++.+...|++.=+
T Consensus 38 ~~~I~~~l~~Ae~ 50 (250)
T PRK14474 38 QQRIANRWQDAEQ 50 (250)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 255
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.64 E-value=6.7e+02 Score=24.88 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCChhHHHHHHhHhhHHHHHHHHHHHHcCC
Q 018690 227 LFTDKKEVQRSATALGYIAHVVSLIASYLEV 257 (352)
Q Consensus 227 ~f~~~~~~e~isaALGyvAhlv~lls~YL~V 257 (352)
.|+. ..+...|.|.|..|.-|.-+-.|..|
T Consensus 183 ~F~~-e~v~~~S~Aa~~Lc~WV~A~~~Y~~v 212 (344)
T PF12777_consen 183 DFNP-EKVRKASKAAGSLCKWVRAMVKYYEV 212 (344)
T ss_dssp TSSH-HHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 4543 45678999999999999999999876
No 256
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.30 E-value=2.6e+02 Score=23.67 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
..+|.+|+.-|.+...+...|+++|.++++.|+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~ 39 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENT 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888888888775
No 257
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=25.30 E-value=4.9e+02 Score=23.17 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 018690 56 QTLQQKLQSLIQ 67 (352)
Q Consensus 56 ~~L~~qI~~~L~ 67 (352)
+.+...|++.-+
T Consensus 52 ~~I~~~l~~Ae~ 63 (173)
T PRK13453 52 RDINRDIDDAEQ 63 (173)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 258
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=25.28 E-value=1e+03 Score=26.97 Aligned_cols=107 Identities=16% Similarity=0.320 Sum_probs=55.1
Q ss_pred hhhHHHHHHHhcHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHH-HHHHHHHhhhhHHHHH
Q 018690 32 EDYDQELARLWSLSSALS-----QADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEAR-RLLMEKMSMRSKVEKE 105 (352)
Q Consensus 32 ~~~~~~L~rL~~L~~~iq-----da~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~-~~~~~~~~~~~~~~~~ 105 (352)
+++....-.||.|.=.|. +|....+.-+..+.+.|+.... ..|++.+-+.|+.+ .+++..+-.+..+-..
T Consensus 446 ~~~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs----~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~ 521 (820)
T PF13779_consen 446 EALREVADLLWDLALRIEDGDLSDAERRLRAAQEALREALERGAS----DEEIARLMQELREAMQDYMQALAEQAQRNPQ 521 (820)
T ss_pred HHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhHhCcc
Confidence 455666677787765544 4777777788888888876532 24454444444432 2233222112211111
Q ss_pred HH----------HHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018690 106 DA----------KNQEERLS---MEVRSLLVAGTALSVARKRLQESNRLLA 143 (352)
Q Consensus 106 ~~----------~krreeL~---~~i~~l~~~~~~l~~a~~~L~ea~~~L~ 143 (352)
.- .-..++|+ .+|+.+++.|+ ..+|++.|.+-.+.++
T Consensus 522 ~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~-~~~A~q~L~qlq~mme 571 (820)
T PF13779_consen 522 QQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGR-MDEARQLLEQLQQMME 571 (820)
T ss_pred cccCcccchhhhccCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 10 01122333 33445555544 5577777777666665
No 259
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=25.20 E-value=1.7e+02 Score=20.73 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018690 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~ 65 (352)
.+++++-| |.|++-|.++..+.+++-..|+.+
T Consensus 6 ieelkqll---~rle~eirett~sl~ninksidq~ 37 (46)
T PF08181_consen 6 IEELKQLL---WRLENEIRETTDSLRNINKSIDQY 37 (46)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45666655 777889998888887777666543
No 260
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=25.08 E-value=55 Score=22.01 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHH
Q 018690 309 ATRAAYAVFLLN 320 (352)
Q Consensus 309 ~~rFeYaVfLLN 320 (352)
.++|.|||-|+.
T Consensus 2 qt~FnyAw~Lv~ 13 (35)
T PF14852_consen 2 QTQFNYAWGLVK 13 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchhHHHHHHhc
Confidence 578999999985
No 261
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=24.93 E-value=6.2e+02 Score=24.29 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 018690 98 MRSKVEKEDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 98 ~~~~~~~~~~~krreeL~~~i~~l~ 122 (352)
.......+.+..++++|.+=+..+.
T Consensus 80 ~~~~~~s~tL~~~~~~L~~lL~~~~ 104 (267)
T PF11887_consen 80 DNLTTTSRTLVDQRQQLDALLLSAT 104 (267)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344445555556666555554333
No 262
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=24.91 E-value=7.4e+02 Score=25.12 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=25.7
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 29 IEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L 66 (352)
|+=.||+-+|.+ ++..|..+..+.+.+..+|...=
T Consensus 84 iD~~~y~~al~q---Aea~la~a~~~~~~~~a~~~~~~ 118 (352)
T COG1566 84 IDPRDYRAALEQ---AEAALAAAEAQLRNLRAQLASAQ 118 (352)
T ss_pred ECcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778877754 57888888888888888776543
No 263
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.78 E-value=9.1e+02 Score=26.13 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 018690 51 ADDKKQTLQQKLQSL 65 (352)
Q Consensus 51 a~~~~~~L~~qI~~~ 65 (352)
+.....+|..+++++
T Consensus 111 ~e~ei~kl~~e~~el 125 (546)
T KOG0977|consen 111 LEIEITKLREELKEL 125 (546)
T ss_pred HHHHHHHhHHHHHHH
Confidence 333444444444333
No 264
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=24.75 E-value=9.6e+02 Score=26.37 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=31.4
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~ 68 (352)
..+++.++|.-+=+++..|+.+..+.+++.++...-++.
T Consensus 129 ~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~ 167 (629)
T KOG0963|consen 129 ELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIEN 167 (629)
T ss_pred HHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888887777763
No 265
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.60 E-value=9.2e+02 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=24.6
Q ss_pred CCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHH
Q 018690 22 DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTL 58 (352)
Q Consensus 22 ~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L 58 (352)
+.-+++.=+|+.+.+.-.||.|...-.+......+-|
T Consensus 198 e~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L 234 (557)
T COG0497 198 EELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELL 234 (557)
T ss_pred HhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344455599999999888888776655544444444
No 266
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.55 E-value=4.4e+02 Score=22.39 Aligned_cols=15 Identities=20% Similarity=0.260 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 018690 105 EDAKNQEERLSMEVR 119 (352)
Q Consensus 105 ~~~~krreeL~~~i~ 119 (352)
+-++++.+.|..++.
T Consensus 97 ~~l~~~~~~l~~~~~ 111 (140)
T PRK03947 97 EILDKRKEELEKALE 111 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444443333
No 267
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.36 E-value=2.8e+02 Score=23.00 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018690 104 KEDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 104 ~~~~~krreeL~~~i~~l~ 122 (352)
+++++.++++|..+|..+.
T Consensus 43 ~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 43 NAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555443
No 268
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=24.33 E-value=5.8e+02 Score=23.73 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM 116 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~-l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~ 116 (352)
+.....|++.++.+......+..+|+.+=..++.. .....++..++.+-.......-++......+..++...+.+...
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 018690 117 E 117 (352)
Q Consensus 117 ~ 117 (352)
.
T Consensus 215 ~ 215 (221)
T PF05700_consen 215 L 215 (221)
T ss_pred H
No 269
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=24.31 E-value=4.4e+02 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 99 RSKVEKEDAKNQEERLSMEVRSLLV 123 (352)
Q Consensus 99 ~~~~~~~~~~krreeL~~~i~~l~~ 123 (352)
+...+...+.+.|||.+.+...++.
T Consensus 37 ~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 37 HLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666677777666665553
No 270
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=24.23 E-value=1.9e+02 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 018690 54 KKQTLQQKLQSLIQVKAES 72 (352)
Q Consensus 54 ~~~~L~~qI~~~L~~~~~~ 72 (352)
.-+.+..+|..+...-.+.
T Consensus 35 ~sd~~~~~l~~~~~~l~ee 53 (155)
T PF07464_consen 35 QSDSVAQQLQNVSSSLQEE 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 271
>PLN02678 seryl-tRNA synthetase
Probab=23.99 E-value=7e+02 Score=26.13 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=12.6
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L 66 (352)
+-+|..|+.--.....+.+.|.++.|.+-
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~s 60 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLN 60 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 272
>PRK01156 chromosome segregation protein; Provisional
Probab=23.83 E-value=1.1e+03 Score=26.52 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---
Q 018690 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAK--- 108 (352)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~--- 108 (352)
.++++.+.+|-....-+.+.......+..+|+.+-......-....++...+..+.........+......+...+.
T Consensus 622 ~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~ 701 (895)
T PRK01156 622 REIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018690 109 NQEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (352)
Q Consensus 109 krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~ 143 (352)
.+.+++...+..+......+..+...+........
T Consensus 702 ~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~ 736 (895)
T PRK01156 702 STIEILRTRINELSDRINDINETLESMKKIKKAIG 736 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 273
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=23.82 E-value=6.2e+02 Score=23.84 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=6.2
Q ss_pred HHHHHHHHHcC
Q 018690 246 HVVSLIASYLE 256 (352)
Q Consensus 246 hlv~lls~YL~ 256 (352)
.+...|...+|
T Consensus 194 ~i~~~l~~~~~ 204 (246)
T TIGR03321 194 QIRDTIRETLG 204 (246)
T ss_pred HHHHHHHHHHC
Confidence 45555666664
No 274
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=23.78 E-value=6.6e+02 Score=24.14 Aligned_cols=74 Identities=15% Similarity=0.083 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhccceee
Q 018690 100 SKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (352)
Q Consensus 100 ~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~l~~qL~~IYPI~~~ 178 (352)
.....+....+..+|..-+..+....+.+.+.+.+|...-..+.+ .-..+..-|...|..++..+..+=|+...
T Consensus 61 l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~-----~a~~~~~~l~~n~~~L~~~~~~L~p~~~l 134 (267)
T PF11887_consen 61 LADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATG-----LADTGTDFLADNRDNLIRALDDLRPTTDL 134 (267)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555433222211 23456777888888888888888877754
No 275
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.74 E-value=5.8e+02 Score=25.33 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHhhhhcchHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018690 55 KQTLQQKLQSLIQVKAESLKRSNELEEMRE-RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSL 121 (352)
Q Consensus 55 ~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~-rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l 121 (352)
+.+|+.-.+.+=+...+-...+..|..|++ +++.-..+|+ +..+.++++|...+|++=|..+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVE-----AQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVE-----AQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
No 276
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=23.74 E-value=1e+03 Score=27.11 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=33.9
Q ss_pred hhhHHHHHHHhcHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHH
Q 018690 32 EDYDQELARLWSLSSAL-----SQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEA 88 (352)
Q Consensus 32 ~~~~~~L~rL~~L~~~i-----qda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~ 88 (352)
++++...--||.|.=.| .+|...-+.-+..+.+.|+... ...|++.+-+.|+.
T Consensus 477 ~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gA----sdeEI~~Lm~eLR~ 534 (851)
T TIGR02302 477 DALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALERGA----SDEEIKQLTDKLRA 534 (851)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHH
Confidence 34555556667776554 4588888888888888888654 23355555555543
No 277
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=23.71 E-value=3.9e+02 Score=28.75 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=43.1
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 117 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~ 117 (352)
|.+.-.|.+.|++.-...+.|+.+|+.-|... +.++-.+-.+++...+.+... +..-.--.++..+||+|-.+
T Consensus 137 l~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~------V~~vNsLl~qIa~lN~qI~~~-~~~g~~~NdLlDqRD~Lv~e 209 (552)
T COG1256 137 LSKAQTLVNQINNTYEQLTDLRKDINAEIAAT------VDEVNSLLKQIADLNKQIRKV-KAAGNDPNDLLDQRDQLVDE 209 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHh-ccCCCCchhHHHHHHHHHHH
Confidence 55666666777777777777777776666543 223333333444333333221 11112234566688888888
Q ss_pred HHHHHH
Q 018690 118 VRSLLV 123 (352)
Q Consensus 118 i~~l~~ 123 (352)
+..++.
T Consensus 210 Ls~~i~ 215 (552)
T COG1256 210 LSQLIG 215 (552)
T ss_pred HHhhcc
Confidence 865553
No 278
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.41 E-value=7.8e+02 Score=24.86 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 018690 316 VFLLNKVFFIYM 327 (352)
Q Consensus 316 VfLLNKnI~~L~ 327 (352)
+|-+---+.|++
T Consensus 215 ~f~~~~~~vq~l 226 (330)
T PF07851_consen 215 LFSLYQSVVQFL 226 (330)
T ss_pred HHHHHHHHHHHH
Confidence 344444555555
No 279
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=23.35 E-value=6.5e+02 Score=23.94 Aligned_cols=98 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----H
Q 018690 45 SSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR----S 120 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~----~ 120 (352)
..++.++..+...|..+...+-+.....-....++.++..+|..........+.++..-..++......|..... .
T Consensus 25 ~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~E 104 (246)
T PF00769_consen 25 QEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEE 104 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHhHHHh
Q 018690 121 LLVAGTALSVARKRLQESNRLL 142 (352)
Q Consensus 121 l~~~~~~l~~a~~~L~ea~~~L 142 (352)
.......+..|+..+..++..|
T Consensus 105 a~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 105 AEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 280
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=23.29 E-value=9.8e+02 Score=26.00 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhccceeeC
Q 018690 156 KMLRMRQQFMISQVSFLYPVKILV 179 (352)
Q Consensus 156 ~~L~~rR~~l~~qL~~IYPI~~~~ 179 (352)
..|.-+|-.++.||+.+-+|+.+.
T Consensus 191 ndLlDqRD~ll~eLS~~v~v~v~~ 214 (624)
T PRK12714 191 PDLLDQRDALVSKLVGYTGGTAVI 214 (624)
T ss_pred hhhHHHHHHHHHHHHhhcCeEEEE
Confidence 467888999999999999999874
No 281
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.22 E-value=6.2e+02 Score=23.64 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018690 46 SALSQADDKKQTLQQKL 62 (352)
Q Consensus 46 ~~iqda~~~~~~L~~qI 62 (352)
..+.|....+.+|+.|.
T Consensus 98 ~~LA~~eirR~~LeAQk 114 (192)
T PF11180_consen 98 ARLADVEIRRAQLEAQK 114 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666777776663
No 282
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=23.21 E-value=6.9e+02 Score=24.18 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=3.9
Q ss_pred ecCCcceee
Q 018690 265 LGGSHTYIN 273 (352)
Q Consensus 265 ~~gSrSyI~ 273 (352)
|.|.-++|.
T Consensus 272 ~~g~V~~Is 280 (331)
T PRK03598 272 YHGQIGFVS 280 (331)
T ss_pred EEEEEEEEc
Confidence 344444444
No 283
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.03 E-value=7.9e+02 Score=24.77 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHH
Q 018690 48 LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~ 93 (352)
|++.......++.++..+... +......+..++.+++..+..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~---y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQR---LGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHH
Confidence 445555555555555554332 2223344455555555444444
No 284
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=22.88 E-value=4.2e+02 Score=23.01 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=11.6
Q ss_pred ehhhhHHHHHHHhcHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALS 49 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iq 49 (352)
+|++...+|.++..++.-+.
T Consensus 1 ~~~~a~~al~ki~~l~~~~~ 20 (149)
T PF07352_consen 1 DREEADWALRKIAELQREIA 20 (149)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 47788888877655544443
No 285
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.85 E-value=1.3e+03 Score=27.40 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 018690 311 RAAYAVFLLNKVF 323 (352)
Q Consensus 311 rFeYaVfLLNKnI 323 (352)
+|.-|.|-.=+|+
T Consensus 706 ~~r~aFYfaLrdt 718 (1293)
T KOG0996|consen 706 KFRPAFYFALRDT 718 (1293)
T ss_pred HHHHHHHHHHhhh
Confidence 3444444444443
No 286
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.67 E-value=6.7e+02 Score=23.82 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=5.8
Q ss_pred HHHHhcHHHHHHHH
Q 018690 38 LARLWSLSSALSQA 51 (352)
Q Consensus 38 L~rL~~L~~~iqda 51 (352)
+.|+.++-.-+...
T Consensus 113 I~R~~~ll~~l~~l 126 (216)
T KOG1962|consen 113 IRRLHTLLRELATL 126 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 287
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=21.79 E-value=6.6e+02 Score=23.42 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (352)
Q Consensus 76 ~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~ 119 (352)
...++.+++||......+++.-.+.=...+.+.---++|.....
T Consensus 33 ~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~ 76 (214)
T PF04344_consen 33 AEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAE 76 (214)
T ss_dssp TTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666677776666555554333333333333333344444443
No 288
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.79 E-value=9.6e+02 Score=25.33 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~ 119 (352)
|+.-|..-+++...+...-..+-..+-..+.....+.+.++|+....+++ +.+.+.++.+++||-++..-+
T Consensus 223 kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElr---------aeE~l~Ee~rrhrEil~k~eR 293 (502)
T KOG0982|consen 223 KVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELR---------AEESLSEEERRHREILIKKER 293 (502)
T ss_pred HHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhh
Q 018690 120 SLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFL 172 (352)
Q Consensus 120 ~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~l~~qL~~I 172 (352)
...--.+-++.--+.|.+.+..|.... .+|+.+...++.-++++-.+|-.+
T Consensus 294 easle~Enlqmr~qqleeentelRs~~--arlksl~dklaee~qr~sd~LE~l 344 (502)
T KOG0982|consen 294 EASLEKENLQMRDQQLEEENTELRSLI--ARLKSLADKLAEEDQRSSDLLEAL 344 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhHHHHHHHH
No 289
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.64 E-value=1.2e+03 Score=26.32 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESL 73 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l 73 (352)
-.|++.|..-+|.+..+++.|..+|+++=+..+..+
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l 443 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAAL 443 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 568899999999999999999999998877655443
No 290
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.57 E-value=6.5e+02 Score=23.29 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=18.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHH
Q 018690 48 LSQAD-DKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (352)
Q Consensus 48 iqda~-~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~ 93 (352)
|...+ ..++.+...|++.-+.+.+. ...+.+.+..|..++...
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eA---e~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEA---DAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44433 34455555555555444322 223344444444444333
No 291
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.55 E-value=1.3e+03 Score=26.94 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krree 113 (352)
+++.|.+| ...|++..+....|+.+|.++=....+-+....+++.--..+..+...........++-.+++..+|..
T Consensus 395 ir~ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~ 471 (1200)
T KOG0964|consen 395 IRSEIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKE 471 (1200)
T ss_pred HHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H---HHHHHHHHHHh-hHHHHHHHHHHHh
Q 018690 114 L---SMEVRSLLVAG-TALSVARKRLQES 138 (352)
Q Consensus 114 L---~~~i~~l~~~~-~~l~~a~~~L~ea 138 (352)
| ..+++.++... .+++.++..|..+
T Consensus 472 lWREE~~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 472 LWREEKKLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 292
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.52 E-value=5.2e+02 Score=22.13 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCCcccCCCCCcceeehhhhHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 14 PTSTSKAIDPENVKVIEWEDYDQELARL----WSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~L~rL----~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
+++.|.......+.+ -+.|...|.++ .+|..-|.....+++.+..+|-.+...+.
T Consensus 3 ~~~~s~~~~~~~~~~--ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 3 MVSVSTSSGGPSVQL--VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred hhhhccccCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333333333 34555555553 45566666677777777777776666543
No 293
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.51 E-value=6.8e+02 Score=23.48 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=46.2
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krre 112 (352)
+-+++..-|+++..+..|....-+++..-|+.+-... +. .+..+.+...+|.....+...+++......+.+....+
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NE-E~--Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~ 153 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNE-ET--LKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA 153 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777776665533 22 33556666666666666665555555443333333333
Q ss_pred HH
Q 018690 113 RL 114 (352)
Q Consensus 113 eL 114 (352)
++
T Consensus 154 ~v 155 (207)
T PF05010_consen 154 QV 155 (207)
T ss_pred HH
Confidence 33
No 294
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.42 E-value=9.1e+02 Score=24.89 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhccceee
Q 018690 156 KMLRMRQQFMISQVSFLYPVKIL 178 (352)
Q Consensus 156 ~~L~~rR~~l~~qL~~IYPI~~~ 178 (352)
..|.-+|..++.+|+.+-+|+..
T Consensus 196 ndL~DqRD~ll~eLS~~i~i~v~ 218 (431)
T PRK06799 196 NQLLDERDRILTEMSKYANIEVS 218 (431)
T ss_pred hhhHHHHHHHHHHHHhhcCeEEE
Confidence 46788899999999999999976
No 295
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.40 E-value=6.2e+02 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018690 48 LSQADDKKQTLQQKLQS 64 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~ 64 (352)
+.+...++++|..+|++
T Consensus 95 L~ele~krqel~seI~~ 111 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEE 111 (907)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34444444444444433
No 296
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.39 E-value=6.8e+02 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 018690 48 LSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
|.+....+.....+|..++..+.
T Consensus 57 i~e~~~~~~~~~~~i~~~~~erd 79 (207)
T PF05010_consen 57 IEEKQKQKELSEAEIQKLLKERD 79 (207)
T ss_pred HHHHHhhHHhHHHHHHHHHhhHH
Confidence 44444455555666666666554
No 297
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.36 E-value=9.5e+02 Score=25.11 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=6.2
Q ss_pred ceeehhhhHHHH
Q 018690 27 KVIEWEDYDQEL 38 (352)
Q Consensus 27 ~~~~~~~~~~~L 38 (352)
.+++.+|++-.|
T Consensus 72 gVfqlddi~~ql 83 (499)
T COG4372 72 GVFQLDDIRPQL 83 (499)
T ss_pred hhhhHHHHHHHH
Confidence 345555555554
No 298
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=21.29 E-value=1e+03 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhccceeeCC
Q 018690 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (352)
Q Consensus 156 ~~L~~rR~~l~~qL~~IYPI~~~~~ 180 (352)
..|.-+|-.|+.+|+.+.+|.....
T Consensus 197 NdLlDqRD~Lv~eLs~~i~i~V~~~ 221 (552)
T COG1256 197 NDLLDQRDQLVDELSQLIGISVSKR 221 (552)
T ss_pred hhHHHHHHHHHHHHHhhcceEEEEc
Confidence 3566778899999999999998754
No 299
>PHA01750 hypothetical protein
Probab=21.13 E-value=1.5e+02 Score=23.18 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQ 63 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~ 63 (352)
---|++...+.++|++||.
T Consensus 48 ~~ei~~~kikqDnl~~qv~ 66 (75)
T PHA01750 48 KTEIEELKIKQDELSRQVE 66 (75)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3334444444444444333
No 300
>PF15294 Leu_zip: Leucine zipper
Probab=21.04 E-value=8.1e+02 Score=24.16 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQSLI 66 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~L 66 (352)
+.---.++.++..|+++|+++=
T Consensus 152 e~~at~~l~Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 152 EKQATSALDEKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555555555543
No 301
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.04 E-value=7.9e+02 Score=24.04 Aligned_cols=25 Identities=8% Similarity=0.104 Sum_probs=10.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690 94 EKMSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 94 ~~~~~~~~~~~~~~~krreeL~~~i 118 (352)
..+....+.....+..+.++++..+
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l 185 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQL 185 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 302
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.03 E-value=6.9e+02 Score=23.35 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=22.4
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~ 93 (352)
+..|+..=+.......+|++.|+.+-+.++ ...+++..++..+......+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na---~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNA---QLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333344434444444455555555544443 23344555555554444433
No 303
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.70 E-value=5.3e+02 Score=21.92 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=15.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
.+.++...+.++......+...++..-.
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~ 38 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDLESQAK 38 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666665555555555444
No 304
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.59 E-value=5.9e+02 Score=22.43 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 018690 58 LQQKLQS 64 (352)
Q Consensus 58 L~~qI~~ 64 (352)
+...|++
T Consensus 46 I~~~l~~ 52 (167)
T PRK14475 46 IQAELDE 52 (167)
T ss_pred HHHHHHH
Confidence 3333333
No 305
>PF15556 Zwint: ZW10 interactor
Probab=20.24 E-value=7.6e+02 Score=23.52 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 018690 45 SSALSQADDK 54 (352)
Q Consensus 45 ~~~iqda~~~ 54 (352)
+.+=+.|.+.
T Consensus 55 dtsRqkai~a 64 (252)
T PF15556_consen 55 DTSRQKAIEA 64 (252)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 306
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=20.21 E-value=1.7e+03 Score=27.74 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=42.1
Q ss_pred CCCcccCCCCCcc--eeehhhhHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHH
Q 018690 15 TSTSKAIDPENVK--VIEWEDYDQELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRL 91 (352)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~L~rL~~L~~~-iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~ 91 (352)
..|+.-...+.|. -....|+++.|...-+-... ++-+.+..+.|+.++..+=..+. ...+...=+.+++.....
T Consensus 620 ~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~---k~~~~~~fA~ekle~L~~ 696 (1822)
T KOG4674|consen 620 PNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLE---KLKNELNLAKEKLENLEK 696 (1822)
T ss_pred CCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH
Confidence 3344444445555 56667777776432221111 11122222222222222221111 122333444445555555
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690 92 LMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~~krreeL~~~i~ 119 (352)
.++. .++-...+.+++..|+.-|.
T Consensus 697 ~ie~----~K~e~~tL~er~~~l~~~i~ 720 (1822)
T KOG4674|consen 697 NLEL----TKEEVETLEERNKNLQSTIS 720 (1822)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 5443 33344455577777777763
No 307
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.09 E-value=6.6e+02 Score=27.60 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 018690 103 EKEDAKNQEERLSMEVRSLLVAGT 126 (352)
Q Consensus 103 ~~~~~~krreeL~~~i~~l~~~~~ 126 (352)
...+++.+|++|+..|..+....+
T Consensus 94 EL~ele~krqel~seI~~~n~kiE 117 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIE 117 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334555666666666655444433
No 308
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.03 E-value=6.2e+02 Score=27.48 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=9.1
Q ss_pred ceEEeceecCCCccc
Q 018690 209 SLTILGLHLTILPFT 223 (352)
Q Consensus 209 ~~tI~Gl~Lp~~~~~ 223 (352)
..+|....||..++-
T Consensus 173 ~v~v~~~~Lpkgt~v 187 (567)
T PLN03086 173 LVEVRYIWLPKGTYA 187 (567)
T ss_pred eEEEEEeecCCCCEE
Confidence 456666677775544
Done!