Query 018690
Match_columns 352
No_of_seqs 170 out of 218
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:33:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 98.8 1.6E-08 5.6E-13 92.5 9.8 95 209-328 42-141 (210)
2 3vp7_A Vacuolar protein sortin 98.6 1.3E-07 4.3E-12 87.1 8.5 108 209-328 16-133 (220)
3 3vkg_A Dynein heavy chain, cyt 86.0 9.5 0.00032 47.0 15.3 92 78-169 2015-2107(3245)
4 1x79_B RAB GTPase binding effe 85.5 14 0.00047 30.3 11.7 100 29-144 6-105 (112)
5 3vkg_A Dynein heavy chain, cyt 85.5 16 0.00054 45.2 16.8 12 296-307 2182-2193(3245)
6 2w83_C C-JUN-amino-terminal ki 84.2 7.7 0.00026 29.7 8.8 32 56-87 5-36 (77)
7 3mq9_A Bone marrow stromal ant 81.4 26 0.00089 34.2 14.2 68 51-118 371-438 (471)
8 3na7_A HP0958; flagellar bioge 80.7 33 0.0011 31.2 15.2 12 156-167 160-171 (256)
9 3plt_A Sphingolipid long chain 78.9 40 0.0014 31.0 13.4 58 29-90 87-144 (234)
10 2zuo_A MVP, major vault protei 78.6 67 0.0023 34.7 16.7 14 231-244 836-849 (861)
11 2dfs_A Myosin-5A; myosin-V, in 78.0 35 0.0012 37.8 15.0 49 77-125 984-1032(1080)
12 3ghg_A Fibrinogen alpha chain; 77.9 7.8 0.00027 39.6 9.0 39 75-113 107-146 (562)
13 2v71_A Nuclear distribution pr 77.5 38 0.0013 30.1 15.2 112 22-133 6-126 (189)
14 1i84_S Smooth muscle myosin he 77.5 9.3 0.00032 42.6 10.4 14 50-63 882-895 (1184)
15 1deq_A Fibrinogen (alpha chain 76.2 26 0.00087 34.5 11.8 80 34-113 65-149 (390)
16 2dfs_A Myosin-5A; myosin-V, in 76.0 69 0.0024 35.5 16.7 18 44-61 933-950 (1080)
17 2v4h_A NF-kappa-B essential mo 75.8 31 0.0011 28.1 13.0 98 13-124 8-105 (110)
18 3cvf_A Homer-3, homer protein 74.9 20 0.0007 27.5 8.7 45 82-126 25-69 (79)
19 3mq9_A Bone marrow stromal ant 73.8 69 0.0023 31.2 15.2 40 82-121 416-455 (471)
20 2d4y_A HAP1, flagellar HOOK-as 70.6 82 0.0028 31.0 14.5 25 155-179 131-155 (463)
21 2ocy_A RAB guanine nucleotide 69.4 55 0.0019 28.2 17.1 87 34-124 8-94 (154)
22 3i00_A HIP-I, huntingtin-inter 66.9 52 0.0018 27.0 10.9 83 46-138 15-97 (120)
23 3na7_A HP0958; flagellar bioge 66.0 78 0.0027 28.7 18.6 9 211-219 202-210 (256)
24 1wt6_A Myotonin-protein kinase 63.6 46 0.0016 25.7 8.4 28 40-67 11-38 (81)
25 2zqm_A Prefoldin beta subunit 63.5 52 0.0018 25.8 13.5 87 33-119 7-108 (117)
26 3a7p_A Autophagy protein 16; c 60.5 82 0.0028 27.1 10.4 24 47-70 29-52 (152)
27 1fxk_A Prefoldin; archaeal pro 58.9 60 0.0021 25.0 12.5 38 33-70 2-39 (107)
28 2v66_B Nuclear distribution pr 56.5 80 0.0027 25.7 12.3 58 78-135 18-75 (111)
29 3ghg_A Fibrinogen alpha chain; 56.3 1.1E+02 0.0038 31.3 12.1 28 102-129 110-137 (562)
30 1i84_S Smooth muscle myosin he 55.9 56 0.0019 36.3 11.0 21 45-65 870-890 (1184)
31 4abx_A DNA repair protein RECN 55.5 67 0.0023 27.4 9.3 96 25-120 28-133 (175)
32 3haj_A Human pacsin2 F-BAR; pa 51.1 1.9E+02 0.0066 28.5 13.7 24 29-52 81-104 (486)
33 1m1j_A Fibrinogen alpha subuni 51.1 1.2E+02 0.004 30.6 11.2 33 80-112 114-146 (491)
34 3cve_A Homer protein homolog 1 49.8 80 0.0027 23.8 9.9 42 83-124 20-61 (72)
35 4dk0_A Putative MACA; alpha-ha 49.0 51 0.0017 30.7 8.1 16 128-143 138-153 (369)
36 3mq7_A Bone marrow stromal ant 44.5 1.3E+02 0.0045 24.7 14.1 45 80-124 42-86 (121)
37 3jsv_C NF-kappa-B essential mo 43.5 1.2E+02 0.0041 24.0 9.9 26 101-126 60-85 (94)
38 1d7m_A Cortexillin I; coiled-c 43.5 1.2E+02 0.0041 23.9 14.9 26 40-65 5-30 (101)
39 1ik9_A DNA repair protein XRCC 42.0 1.9E+02 0.0065 25.8 11.8 37 38-74 131-167 (213)
40 3k4t_A Virion-associated prote 40.7 41 0.0014 26.5 4.9 32 39-70 2-33 (95)
41 2fxo_A Myosin heavy chain, car 40.4 1.5E+02 0.0051 24.1 15.9 24 44-67 25-48 (129)
42 2e7s_A RAB guanine nucleotide 38.2 42 0.0014 28.3 4.9 23 100-122 58-80 (135)
43 4fla_A Regulation of nuclear P 38.0 1.9E+02 0.0063 24.6 10.7 56 33-94 76-131 (152)
44 2jee_A YIIU; FTSZ, septum, coi 37.8 1.4E+02 0.0047 23.0 11.3 30 41-70 8-37 (81)
45 2v4h_A NF-kappa-B essential mo 37.8 1.6E+02 0.0056 23.9 11.9 38 77-114 24-61 (110)
46 3f6n_A Virion-associated prote 35.8 63 0.0022 26.8 5.5 33 39-71 2-34 (129)
47 3tul_A Cell invasion protein S 35.8 2.1E+02 0.0071 24.5 9.0 19 36-54 66-84 (158)
48 3fpp_A Macrolide-specific effl 34.6 68 0.0023 29.5 6.4 9 314-322 293-301 (341)
49 3tul_A Cell invasion protein S 32.7 2.3E+02 0.008 24.2 12.2 33 34-67 9-41 (158)
50 1m1j_B Fibrinogen beta chain; 32.6 3.9E+02 0.013 26.7 13.6 9 170-178 227-235 (464)
51 3tnu_A Keratin, type I cytoske 30.1 2.2E+02 0.0076 23.1 12.4 20 48-67 40-59 (131)
52 3qne_A Seryl-tRNA synthetase, 29.3 2.5E+02 0.0084 28.3 9.8 25 41-65 35-59 (485)
53 3aco_A Pacsin2, protein kinase 28.3 2.3E+02 0.0079 26.3 9.0 24 30-53 89-112 (350)
54 2dq0_A Seryl-tRNA synthetase; 28.1 2.8E+02 0.0096 27.4 9.9 15 244-259 324-338 (455)
55 3iv1_A Tumor susceptibility ge 27.9 2E+02 0.0069 21.9 10.0 15 56-70 10-24 (78)
56 2p2u_A HOST-nuclease inhibitor 27.5 2.9E+02 0.0099 23.6 8.9 24 25-48 9-32 (171)
57 1wle_A Seryl-tRNA synthetase; 26.9 3.4E+02 0.012 27.3 10.4 10 28-37 40-49 (501)
58 2v71_A Nuclear distribution pr 26.4 3.3E+02 0.011 23.9 18.5 59 53-118 24-83 (189)
59 3qwe_A GMIP, GEM-interacting p 24.5 4.3E+02 0.015 24.6 15.2 39 130-171 181-220 (279)
60 2i1j_A Moesin; FERM, coiled-co 24.1 1.9E+02 0.0066 29.5 8.1 35 311-345 515-558 (575)
61 3tnu_B Keratin, type II cytosk 24.1 2.8E+02 0.0097 22.3 12.8 20 48-67 38-57 (129)
62 2dq0_A Seryl-tRNA synthetase; 23.7 3E+02 0.01 27.2 9.2 11 108-118 51-61 (455)
63 2ocy_A RAB guanine nucleotide 23.6 3.4E+02 0.012 23.1 15.7 20 99-118 76-95 (154)
64 1ic2_A Tropomyosin alpha chain 23.1 2.3E+02 0.008 21.0 9.2 9 105-113 55-63 (81)
65 3qb5_K Translin-associated pro 22.9 2.5E+02 0.0084 26.2 8.0 50 7-63 12-64 (290)
66 1vp7_A Exodeoxyribonuclease VI 22.7 1.1E+02 0.0038 24.4 4.6 32 10-41 8-39 (100)
67 4dnd_A Syntaxin-10, SYN10; str 21.5 3.2E+02 0.011 22.4 7.6 26 23-48 25-50 (130)
68 2f1m_A Acriflavine resistance 21.5 2.8E+02 0.0095 24.4 7.8 13 130-142 116-128 (277)
69 2x3v_A Syndapin I, protein kin 21.1 4.7E+02 0.016 23.8 14.9 24 30-53 80-103 (337)
70 1wle_A Seryl-tRNA synthetase; 20.6 6E+02 0.021 25.4 10.8 22 239-260 349-370 (501)
71 2eqb_B RAB guanine nucleotide 20.5 3.2E+02 0.011 21.6 13.4 21 102-122 40-60 (97)
72 1m1j_C Fibrinogen gamma chain; 20.4 3.8E+02 0.013 26.3 9.0 8 170-177 164-171 (409)
73 2f1m_A Acriflavine resistance 20.2 4.4E+02 0.015 23.1 10.3 6 209-214 160-165 (277)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=98.80 E-value=1.6e-08 Score=92.47 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=77.4
Q ss_pred ceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCCCCCCCCcccc
Q 018690 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS 287 (352)
Q Consensus 209 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~ 287 (352)
.=||.|+.|.-.+.... += ..|+||+|++|.|+..||.+|++.+ +|.|.|.||+|+|.+...
T Consensus 42 fgtINglRLGrlp~~~V----~W---~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~---------- 104 (210)
T 4ddp_A 42 FGTINNFRLGRLPSVPV----EW---NEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD---------- 104 (210)
T ss_dssp EEEETTEECCCBTTBCC----CH---HHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred ceeEcccccCCCCCCCC----CH---HHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence 44899999987653211 22 3599999999999999999999999 799999999999988642
Q ss_pred cccccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHHHh
Q 018690 288 NIALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKVFFIYML 328 (352)
Q Consensus 288 ~~~~~~~~~~r~fPLy~~g~d----~~rFeYaVfLLNKnI~~L~~ 328 (352)
....||||..|.- ..+|+-|+--+-.-+.|++.
T Consensus 105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~ 141 (210)
T 4ddp_A 105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKE 141 (210)
T ss_dssp --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHH
Confidence 2358999987643 36999999999999999884
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.3e-07 Score=87.10 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=75.2
Q ss_pred ceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCC-CCCCCCccc
Q 018690 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAP-SIEPTSDLS 286 (352)
Q Consensus 209 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~-~~~~ss~~~ 286 (352)
.=||.|+.|.-.+.... += ..|+||+|++|.|+..||..|++.+ .|.|.|.||.|+|.+... ..+- ...+
T Consensus 16 fgTINglRLGrl~~~~V----~W---~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~-~~~~ 87 (220)
T 3vp7_A 16 FATINGLRLGSIPESVV----PW---KEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEY-NNST 87 (220)
T ss_dssp EEEETTEEECCBTTBCC----CH---HHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred ceeEcccccCCCCCCCC----CH---HHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeecccccccc-cccc
Confidence 44899999987652211 22 3599999999999999999999999 599999999999999431 1100 0000
Q ss_pred ccccccCCCCCcccCCccCCC--------chhhHHHHHHHHHHHHHHHHh
Q 018690 287 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKVFFIYML 328 (352)
Q Consensus 287 ~~~~~~~~~~~r~fPLy~~g~--------d~~rFeYaVfLLNKnI~~L~~ 328 (352)
. ........||||..+. -..+|+-|+--+=.-|.|++.
T Consensus 88 ~----~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~ 133 (220)
T 3vp7_A 88 T----NAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITR 133 (220)
T ss_dssp ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHH
T ss_pred c----ccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHH
Confidence 0 0012346899999864 135999999888888888875
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.99 E-value=9.5 Score=47.01 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccc-cchHHHHHH
Q 018690 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-YGHLQKLQK 156 (352)
Q Consensus 78 ~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~-~~~L~~l~~ 156 (352)
++++++++++.++..+.+.+..++.+.+.+.+=+++....++........++.++.+|.-|..++.+..+ +.|=.....
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 4555555555555555554444433333333333333333333333344566777788888777654322 133333344
Q ss_pred HHHHHHHHHHHHH
Q 018690 157 MLRMRQQFMISQV 169 (352)
Q Consensus 157 ~L~~rR~~l~~qL 169 (352)
.+..+...++.++
T Consensus 2095 ~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2095 NFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHH
Confidence 5555566666654
No 4
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=85.49 E-value=14 Score=30.32 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=48.1
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 018690 29 IEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAK 108 (352)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~ 108 (352)
=+|+-++..+.. |..-+..+...+..|+..++..-+. .+..+.++..+++.....+.+++... .
T Consensus 6 ~~~~~lq~~~~q---l~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~f-------s 69 (112)
T 1x79_B 6 DQVKKLQLMLRQ---ANDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGL-------S 69 (112)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 368888888844 3445555556666666664443332 35667777777777776665544444 3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhc
Q 018690 109 NQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 144 (352)
Q Consensus 109 krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~ 144 (352)
.-+.+.+..+..|....+.+...-.+|+..++-|.|
T Consensus 70 q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 70 QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 333344444444444444444444455555555554
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.45 E-value=16 Score=45.18 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=8.8
Q ss_pred CCcccCCccCCC
Q 018690 296 KPAEFPLFLEGQ 307 (352)
Q Consensus 296 ~~r~fPLy~~g~ 307 (352)
..+.|||..|-+
T Consensus 2182 ~~~R~PLlIDPq 2193 (3245)
T 3vkg_A 2182 RFNRYPLVIDPS 2193 (3245)
T ss_dssp SCSSCEEEECTT
T ss_pred cCCCceEEEChH
Confidence 457899998843
No 6
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.20 E-value=7.7 Score=29.72 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhHHhhhhcchHHHHHHHHH
Q 018690 56 QTLQQKLQSLIQVKAESLKRSNELEEMRERLE 87 (352)
Q Consensus 56 ~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~ 87 (352)
.....+++.+|..+.+.+.++|++..++..|=
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI 36 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLI 36 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999888888888877766553
No 7
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.42 E-value=26 Score=34.23 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690 51 ADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 51 a~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i 118 (352)
..+..+.++.+|+.+|+......+..+-...++++|...++-..++.++.-..+..|..=.+.|..++
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 45556677777777777665444445555666666666666666555555444444444334443333
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.72 E-value=33 Score=31.20 Aligned_cols=12 Identities=0% Similarity=0.271 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 018690 156 KMLRMRQQFMIS 167 (352)
Q Consensus 156 ~~L~~rR~~l~~ 167 (352)
..+...|..+..
T Consensus 160 ~~l~~~r~~l~~ 171 (256)
T 3na7_A 160 QIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334455555555
No 9
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=78.90 E-value=40 Score=30.99 Aligned_cols=58 Identities=12% Similarity=0.335 Sum_probs=43.6
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHH
Q 018690 29 IEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARR 90 (352)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~ 90 (352)
..+++++..|-.+-|.+.+++.....+++|..+|..+-.. ++ ....+..++++|..++
T Consensus 87 ~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k--~P--~s~kl~~LeqELvraE 144 (234)
T 3plt_A 87 DKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYK--DP--QSTKIPVLEQELVRAE 144 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CT--TCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc--CC--CCchHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999865432 33 2345666666655443
No 10
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=78.63 E-value=67 Score=34.68 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=0.0
Q ss_pred hhHHHHHHhHhhHH
Q 018690 231 KKEVQRSATALGYI 244 (352)
Q Consensus 231 ~~~~e~isaALGyv 244 (352)
+.++.-.++|-|.+
T Consensus 836 ~sPinLf~ta~gl~ 849 (861)
T 2zuo_A 836 SSPINLFSTAFGLL 849 (861)
T ss_dssp --------------
T ss_pred CChHHHHHHhhHhh
Confidence 34444455555554
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.05 E-value=35 Score=37.84 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (352)
Q Consensus 77 ~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~ 125 (352)
+.+..++++++..+..+....+..+.+.+...+-+++|+.++..|....
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555544444444444444444444444444444444444333
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.89 E-value=7.8 Score=39.63 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=22.6
Q ss_pred hcchHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018690 75 RSNELE-EMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (352)
Q Consensus 75 ~~~~l~-e~~~rl~~~~~~~~~~~~~~~~~~~~~~krree 113 (352)
..+++. +++.++...+..|...+.+++.|+..|+.++.+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 667777777777766665555555555554443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.52 E-value=38 Score=30.08 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=60.7
Q ss_pred CCCCcceeehhh-hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh--------hhcchHHHHHHHHHHHHHH
Q 018690 22 DPENVKVIEWED-YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESL--------KRSNELEEMRERLEARRLL 92 (352)
Q Consensus 22 ~~~~~~~~~~~~-~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l--------~~~~~l~e~~~rl~~~~~~ 92 (352)
++....+--|.. +.....++..|..-+.+=...-..|+++++.=|+....-. ....+++.++.++......
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666755 3333445566677778877777778777777776432111 1223344444444443333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018690 93 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARK 133 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~ 133 (352)
........++-...+...++.|+..|+.+..+..+++.+.+
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333344444455566666777777666665555544443
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=77.46 E-value=9.3 Score=42.58 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 018690 50 QADDKKQTLQQKLQ 63 (352)
Q Consensus 50 da~~~~~~L~~qI~ 63 (352)
++......|+.+++
T Consensus 882 ele~~l~~Le~e~~ 895 (1184)
T 1i84_S 882 ELEQKHTQLCEEKN 895 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.18 E-value=26 Score=34.48 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=39.4
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh----cch-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKR----SNE-LEEMRERLEARRLLMEKMSMRSKVEKEDAK 108 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~----~~~-l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~ 108 (352)
|++.+..|-+.=..++.+-.+.......|.+++..+....+. .++ .++++.++...+..|......++.|+..++
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~ 144 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVR 144 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344443433333344444444444555555555444322211 111 156666666666666666666666666655
Q ss_pred HHHHH
Q 018690 109 NQEER 113 (352)
Q Consensus 109 krree 113 (352)
+++-+
T Consensus 145 ~q~~k 149 (390)
T 1deq_A 145 DQLVD 149 (390)
T ss_pred HHHHH
Confidence 54443
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.99 E-value=69 Score=35.49 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018690 44 LSSALSQADDKKQTLQQK 61 (352)
Q Consensus 44 L~~~iqda~~~~~~L~~q 61 (352)
|+.-|.+....+..|+.+
T Consensus 933 Lq~rL~~~e~~n~~L~~~ 950 (1080)
T 2dfs_A 933 LQRKIDEQNKEYKSLLEK 950 (1080)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=75.79 E-value=31 Score=28.13 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=49.7
Q ss_pred CCCCCcccCCCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHH
Q 018690 13 HPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLL 92 (352)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~ 92 (352)
|..|..-..-++.+.-++..++.. +|...+.+|.+-....+.|+++|.. ..+ ....++.+++++..-+.-
T Consensus 8 ~~~~~~~~~~~~~~~~~ei~~L~~---~L~~AEeaL~~Kq~~idelk~ei~q----~~~---~lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 8 HHHSSGLVPRGSHMASMQLEDLRQ---QLQQAEEALVAKQELIDKLKEEAEQ----HKI---VMETVPVLKAQADIYKAD 77 (110)
T ss_dssp -----CCCCTTCCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHTHHHHHHHHHHHHHHH
T ss_pred cccccCCCcchhHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHH
Confidence 333333333444444455555554 4555666666666666666665554 222 124456666666532222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 93 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
-. .-+..++.+.-++++|...++.|...
T Consensus 78 F~----aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 78 FQ----AERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc----cchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 21 23455566666677777777655543
No 18
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.92 E-value=20 Score=27.54 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018690 82 MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGT 126 (352)
Q Consensus 82 ~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~ 126 (352)
++.+|...+..++.-+....+++.++++--+.|-.+|-.|..-..
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRq 69 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELRE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555555555554555556666666666666666665554433
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.79 E-value=69 Score=31.16 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018690 82 MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSL 121 (352)
Q Consensus 82 ~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l 121 (352)
++.+-..+..-|-.+...+++.+.+..++.++|..+|..+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 416 VEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444445555555555433
No 20
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=70.65 E-value=82 Score=31.00 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeC
Q 018690 155 QKMLRMRQQFMISQVSFLYPVKILV 179 (352)
Q Consensus 155 ~~~L~~rR~~l~~qL~~IYPI~~~~ 179 (352)
-..|.-+|-.++.||+.+-+|+.+.
T Consensus 131 ~ndLlDqRD~ll~eLS~~v~v~v~~ 155 (463)
T 2d4y_A 131 PNDLLDQRDQLVSELNKIVGVEVSV 155 (463)
T ss_dssp -CHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred chHhHHHHHHHHHHHHhhcCeEEEE
Confidence 3468888999999999999999875
No 21
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.35 E-value=55 Score=28.18 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=47.4
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krree 113 (352)
+=+++-+-.+|++.|..+.........+|..+-..+...-....++......+......+ ...+..+..+++.+..
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l----~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDI----AKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHH----HHHHHHHHHHHTHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 345677777888888888888776666665544333221111112222222222222222 2345566677777777
Q ss_pred HHHHHHHHHHH
Q 018690 114 LSMEVRSLLVA 124 (352)
Q Consensus 114 L~~~i~~l~~~ 124 (352)
+...+..|..+
T Consensus 84 ie~ElEeLTas 94 (154)
T 2ocy_A 84 LNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 22
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.93 E-value=52 Score=27.05 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 46 SALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (352)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~ 125 (352)
..|.....+.+.|..+++.+....+ ..+..++.++......++. .+..+..+.-..+.|+..+..+....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q------~~v~ql~~~i~~Le~eL~e----~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ------RVVLQLKGHVSELEADLAE----QQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667777778888887765433 2345555555555555543 44455666666677777777665554
Q ss_pred hHHHHHHHHHHHh
Q 018690 126 TALSVARKRLQES 138 (352)
Q Consensus 126 ~~l~~a~~~L~ea 138 (352)
..-..++..+.++
T Consensus 85 ~~~~~~q~~~~e~ 97 (120)
T 3i00_A 85 EDTEKAQRSLSEI 97 (120)
T ss_dssp C------------
T ss_pred hhhHHHHHHHHHH
Confidence 4444555555554
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.98 E-value=78 Score=28.69 Aligned_cols=9 Identities=11% Similarity=-0.300 Sum_probs=5.0
Q ss_pred EEeceecCC
Q 018690 211 TILGLHLTI 219 (352)
Q Consensus 211 tI~Gl~Lp~ 219 (352)
.=|++.||.
T Consensus 202 ~GC~~~lpp 210 (256)
T 3na7_A 202 GGCFIRLND 210 (256)
T ss_dssp TTTCCBCCH
T ss_pred CCCCeeeCH
Confidence 345666664
No 24
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=63.56 E-value=46 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
.+-+|+++++.=...++.+..+++.+=.
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~ 38 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRT 38 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4448999998888888888888755443
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=63.55 E-value=52 Score=25.80 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=49.1
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh---------------hcchHHHHHHHHHHHHHHHHHHh
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLK---------------RSNELEEMRERLEARRLLMEKMS 97 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~---------------~~~~l~e~~~rl~~~~~~~~~~~ 97 (352)
+++..+.++..|..-++.....+..+..+++.+-.+..+.-. ....++++...|......++..+
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i 86 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888888776655432211 11234555555555544444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 018690 98 MRSKVEKEDAKNQEERLSMEVR 119 (352)
Q Consensus 98 ~~~~~~~~~~~krreeL~~~i~ 119 (352)
.......+.+.++-++++..+.
T Consensus 87 ~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 87 NALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333444444444444433
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.45 E-value=82 Score=27.06 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 47 ALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 47 ~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
.+-+.+..++.++.+...+.+.-.
T Consensus 29 ~l~~rL~~Rd~~E~~~~~l~~e~~ 52 (152)
T 3a7p_A 29 LLIRRLTDRNDKEAHLNELFQDNS 52 (152)
T ss_dssp ------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhc
Confidence 366778888888888888887543
No 27
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=58.91 E-value=60 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=29.3
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
.+++.+.++..|..-++.....+..+..+++.+-.+..
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888877665543
No 28
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.51 E-value=80 Score=25.70 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018690 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 135 (352)
Q Consensus 78 ~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L 135 (352)
++++++.++......-......+++-...+...++.|+..||.+..+..+|+.+.+-.
T Consensus 18 E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 18 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 4444444444443333333334444455566666666667766666666555444433
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.33 E-value=1.1e+02 Score=31.28 Aligned_cols=28 Identities=21% Similarity=0.098 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018690 102 VEKEDAKNQEERLSMEVRSLLVAGTALS 129 (352)
Q Consensus 102 ~~~~~~~krreeL~~~i~~l~~~~~~l~ 129 (352)
...++++++.+.|+.+|...+....+|+
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666654444444444
No 30
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=55.94 E-value=56 Score=36.32 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 45 SSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~~ 65 (352)
...+.........++.+++.+
T Consensus 870 ~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 870 KERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443
No 31
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=55.54 E-value=67 Score=27.43 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=52.5
Q ss_pred CcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHh
Q 018690 25 NVKVIEWEDYDQELARLWSLSSALSQADDKKQTL-------QQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97 (352)
Q Consensus 25 ~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L-------~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~ 97 (352)
+|+.=+|+++.....||.|...-...+......| ...|..++..-.........+.++.+++..+...+.++.
T Consensus 28 ~l~~gE~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~ 107 (175)
T 4abx_A 28 SPDPGEEEGLNTELSRLSNLHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIA 107 (175)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 3455689999999888888666544444433333 233333333322222233456666677776666666655
Q ss_pred hhhHHHHHHHH---HHHHHHHHHHHH
Q 018690 98 MRSKVEKEDAK---NQEERLSMEVRS 120 (352)
Q Consensus 98 ~~~~~~~~~~~---krreeL~~~i~~ 120 (352)
...+.....+. .+-+++..++..
T Consensus 108 ~~L~~y~~~le~DP~rL~~ie~RL~~ 133 (175)
T 4abx_A 108 GELRDVAEGSAADPEALDRVEARLSA 133 (175)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55544444332 245566666543
No 32
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=51.11 E-value=1.9e+02 Score=28.50 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=16.8
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHH
Q 018690 29 IEWEDYDQELARLWSLSSALSQAD 52 (352)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~ 52 (352)
-.|..+.+.+.+++.....+.+.+
T Consensus 81 ~aw~~~~~e~e~~a~~H~~~a~~L 104 (486)
T 3haj_A 81 KAWMAFMSEAERVSELHLEVKASL 104 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888877777666655544
No 33
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=51.07 E-value=1.2e+02 Score=30.59 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 018690 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (352)
Q Consensus 80 ~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krre 112 (352)
++++.++...+..|......++.|+..++.++-
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~s 146 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVV 146 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555555555554443
No 34
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=49.84 E-value=80 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 83 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 83 ~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
+.+|...+..++.-+....+++.++++--+.|-.+|-.|..-
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444444444434444555555555555566666554444
No 35
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=48.98 E-value=51 Score=30.72 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHhh
Q 018690 128 LSVARKRLQESNRLLA 143 (352)
Q Consensus 128 l~~a~~~L~ea~~~L~ 143 (352)
+..++..+..++..|.
T Consensus 138 l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 138 IKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444555554443
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.53 E-value=1.3e+02 Score=24.72 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 80 ~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
-+.+.+-..+..-|..+++.+++.+.+..++-++|+.+|..|...
T Consensus 42 ~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~ 86 (121)
T 3mq7_A 42 QDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHK 86 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666677777777677778888888766554
No 37
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.54 E-value=1.2e+02 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018690 101 KVEKEDAKNQEERLSMEVRSLLVAGT 126 (352)
Q Consensus 101 ~~~~~~~~krreeL~~~i~~l~~~~~ 126 (352)
+..++.+..++++|...++.+.....
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44455555556666666665554433
No 38
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=43.52 E-value=1.2e+02 Score=23.91 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018690 40 RLWSLSSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~~ 65 (352)
+|++|+.+++--..+++.|..|-.++
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL 30 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQL 30 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 67888999998888888887775443
No 39
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.99 E-value=1.9e+02 Score=25.83 Aligned_cols=37 Identities=5% Similarity=0.053 Sum_probs=21.4
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 018690 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLK 74 (352)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~ 74 (352)
+.....+...+..+..+.++|+.+++.+.+...+..+
T Consensus 131 ~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 131 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666666666677777666665554433
No 40
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=40.70 E-value=41 Score=26.54 Aligned_cols=32 Identities=9% Similarity=0.317 Sum_probs=28.9
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
|.|+.++.-|.+++.....++..|+.+|+...
T Consensus 2 ~nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~g 33 (95)
T 3k4t_A 2 ANLNQIQKEVSEILSDQKSMKADIKAILELLG 33 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56888999999999999999999999999764
No 41
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=40.40 E-value=1.5e+02 Score=24.15 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 44 LSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
|...+......+..|..+...+++
T Consensus 25 lke~l~k~e~~r~ele~~~~~l~~ 48 (129)
T 2fxo_A 25 LKEALEKSEARRKELEEKMVSLLQ 48 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555444444444
No 42
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.23 E-value=42 Score=28.32 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018690 100 SKVEKEDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 100 ~~~~~~~~~krreeL~~~i~~l~ 122 (352)
.+..+..+++.+..+...+..|.
T Consensus 58 E~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 58 ENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp TTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665444
No 43
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=38.00 E-value=1.9e+02 Score=24.57 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=32.2
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHH
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLME 94 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~ 94 (352)
+++.+.+.|.....++.+=...+..|...++.....- ...+.+++.+++.-+..++
T Consensus 76 ~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~------~~~l~e~e~~leeyK~Kl~ 131 (152)
T 4fla_A 76 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQ------KDVLSEKEKKLEEYKQKLA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666655532 2334455555554444443
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.84 E-value=1.4e+02 Score=23.00 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=22.1
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
|..|..=|++|..+..-|+-+|+++=+.+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888777766654
No 45
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=37.82 E-value=1.6e+02 Score=23.86 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018690 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (352)
Q Consensus 77 ~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL 114 (352)
-+++.+..+|..+...++......+++++.+.++++.+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888777777777777777755544
No 46
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=35.77 E-value=63 Score=26.79 Aligned_cols=33 Identities=9% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018690 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE 71 (352)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~ 71 (352)
|.|+.+..-|.+++.....|...|.++|+....
T Consensus 2 ~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 2 ANLNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 568888899999999999999999999987643
No 47
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=35.76 E-value=2.1e+02 Score=24.49 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=7.2
Q ss_pred HHHHHHhcHHHHHHHHHHH
Q 018690 36 QELARLWSLSSALSQADDK 54 (352)
Q Consensus 36 ~~L~rL~~L~~~iqda~~~ 54 (352)
.++-++.+-+..++++..+
T Consensus 66 ~ai~n~~sA~~~~d~lekK 84 (158)
T 3tul_A 66 ASIKKTDTAKSVYDAATKK 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHH
Confidence 3333333333333333333
No 48
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=34.59 E-value=68 Score=29.53 Aligned_cols=9 Identities=44% Similarity=0.493 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 018690 314 YAVFLLNKV 322 (352)
Q Consensus 314 YaVfLLNKn 322 (352)
|.||....+
T Consensus 293 ~~v~v~~~~ 301 (341)
T 3fpp_A 293 YKVKLLRNG 301 (341)
T ss_dssp ---------
T ss_pred EEEEEEeCC
Confidence 345544433
No 49
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=32.74 E-value=2.3e+02 Score=24.18 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=16.1
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~ 67 (352)
+=+.||.|.. +.+++...-..+...+.|.+--+
T Consensus 9 LlG~l~~l~G-~~Sl~qL~nrla~~~am~~sqqq 41 (158)
T 3tul_A 9 LLGKLMTLLG-DVSLSQLESRLAVWQAMIESQKE 41 (158)
T ss_dssp HHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444554432 34455555555555555554444
No 50
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.57 E-value=3.9e+02 Score=26.72 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=4.8
Q ss_pred hhhccceee
Q 018690 170 SFLYPVKIL 178 (352)
Q Consensus 170 ~~IYPI~~~ 178 (352)
.-+|-|.|.
T Consensus 227 SGvY~I~p~ 235 (464)
T 1m1j_B 227 SEMYIIQPD 235 (464)
T ss_dssp CEEEEECSS
T ss_pred CeeEEEEeC
Confidence 345666553
No 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.07 E-value=2.2e+02 Score=23.09 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018690 48 LSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~~L~ 67 (352)
|.+...+...|+.+|+++..
T Consensus 40 i~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555543
No 52
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.35 E-value=2.5e+02 Score=28.30 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=11.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHH
Q 018690 41 LWSLSSALSQADDKKQTLQQKLQSL 65 (352)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~~ 65 (352)
+..|+.--..++.+.+.|+++.|.+
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~ 59 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSV 59 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 53
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=28.30 E-value=2.3e+02 Score=26.32 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.5
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALSQADD 53 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~ 53 (352)
.|..+.+++.+++.....+.+.+.
T Consensus 89 aw~~l~~e~e~~a~~H~~la~~L~ 112 (350)
T 3aco_A 89 AWMAFMSEAERVSELHLEVKASLM 112 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888777666655543
No 54
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.06 E-value=2.8e+02 Score=27.39 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHcCCCC
Q 018690 244 IAHVVSLIASYLEVPL 259 (352)
Q Consensus 244 vAhlv~lls~YL~VpL 259 (352)
+.+...++ .-||+|.
T Consensus 324 l~~~~~il-~~LGL~y 338 (455)
T 2dq0_A 324 IRNAEELF-QELEIPY 338 (455)
T ss_dssp HHHHHHHH-HHTTCCE
T ss_pred HHHHHHHH-HHcCCce
Confidence 33333344 3478863
No 55
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.91 E-value=2e+02 Score=21.89 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhH
Q 018690 56 QTLQQKLQSLIQVKA 70 (352)
Q Consensus 56 ~~L~~qI~~~L~~~~ 70 (352)
++|..++.+.+...+
T Consensus 10 DKLRrrl~E~~~q~q 24 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQ 24 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456666666666544
No 56
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=27.46 E-value=2.9e+02 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=17.5
Q ss_pred CcceeehhhhHHHHHHHhcHHHHH
Q 018690 25 NVKVIEWEDYDQELARLWSLSSAL 48 (352)
Q Consensus 25 ~~~~~~~~~~~~~L~rL~~L~~~i 48 (352)
.+.+-+|++...+|.+++.+...+
T Consensus 9 ~~~i~~~~~~~~alr~ia~l~r~~ 32 (171)
T 2p2u_A 9 PVIVADIRQAEGALAEIATIDRKV 32 (171)
T ss_dssp -CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHH
Confidence 367889999999997765544443
No 57
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.95 E-value=3.4e+02 Score=27.26 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=5.7
Q ss_pred eeehhhhHHH
Q 018690 28 VIEWEDYDQE 37 (352)
Q Consensus 28 ~~~~~~~~~~ 37 (352)
+++-.-++..
T Consensus 40 mlD~~~ir~n 49 (501)
T 1wle_A 40 LLDMESLCAY 49 (501)
T ss_dssp CCCHHHHHHS
T ss_pred ccCHHHHHhC
Confidence 6666555543
No 58
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.40 E-value=3.3e+02 Score=23.95 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhcchH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690 53 DKKQTLQQKLQSLIQVKAESLKRSNEL-EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 53 ~~~~~L~~qI~~~L~~~~~~l~~~~~l-~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i 118 (352)
...+.++..+++.-+... ++ .+++..|..+.+....+..+..++..++...|..+....
T Consensus 24 q~~~~le~El~EFqesSr-------ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSR-------ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444332 22 345555666666666655666666666555555555444
No 59
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=24.51 E-value=4.3e+02 Score=24.55 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHhhcccccc-hHHHHHHHHHHHHHHHHHHHhh
Q 018690 130 VARKRLQESNRLLAGEKGYG-HLQKLQKMLRMRQQFMISQVSF 171 (352)
Q Consensus 130 ~a~~~L~ea~~~L~~e~~~~-~L~~l~~~L~~rR~~l~~qL~~ 171 (352)
++.+++++|...... ++ .....+..|...|-..+.+|..
T Consensus 181 ea~~K~eeAd~~Y~~---~V~~a~~~r~eL~~tk~~~v~~Lr~ 220 (279)
T 3qwe_A 181 EAQAKAQEAEALYQA---CVREANARQQDLEIAKQRIVSHVRK 220 (279)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 556666665555432 11 1334445555566777777754
No 60
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.12 E-value=1.9e+02 Score=29.49 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHhh--cC--c-cC----CchhchHHHHh
Q 018690 311 RAAYAVFLLNKVFFIYMLS--SD--Q-YC----SLTQSQYPLMF 345 (352)
Q Consensus 311 rFeYaVfLLNKnI~~L~~s--q~--~-~~----~l~~~~~~L~~ 345 (352)
+..--+.-|..+|+.+-.. ++ | .| ..|+++|+.|.
T Consensus 515 ~lq~qL~~L~~el~~~r~~~k~t~~D~lh~en~~~GrdKykTLr 558 (575)
T 2i1j_A 515 RLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLR 558 (575)
T ss_dssp HHHHHHHHHHHHHHTTBCGGGCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCchHHHHHH
Confidence 4444466667777766421 11 1 22 34667776664
No 61
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.12 E-value=2.8e+02 Score=22.33 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018690 48 LSQADDKKQTLQQKLQSLIQ 67 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~~L~ 67 (352)
|.+...+...|+.+|+++..
T Consensus 38 i~elrr~iq~L~~el~~l~~ 57 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKK 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555543
No 62
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.67 E-value=3e+02 Score=27.21 Aligned_cols=11 Identities=9% Similarity=0.661 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 018690 108 KNQEERLSMEV 118 (352)
Q Consensus 108 ~krreeL~~~i 118 (352)
+++|.++..+|
T Consensus 51 ~~~~n~~sk~i 61 (455)
T 2dq0_A 51 RHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 63
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.56 E-value=3.4e+02 Score=23.11 Aligned_cols=20 Identities=15% Similarity=0.332 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 018690 99 RSKVEKEDAKNQEERLSMEV 118 (352)
Q Consensus 99 ~~~~~~~~~~krreeL~~~i 118 (352)
.....+..+...-|+|-+++
T Consensus 76 ~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.15 E-value=2.3e+02 Score=21.03 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 018690 105 EDAKNQEER 113 (352)
Q Consensus 105 ~~~~krree 113 (352)
.++.+-.+.
T Consensus 55 ~eld~~ee~ 63 (81)
T 1ic2_A 55 DELDKYSES 63 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 65
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=22.90 E-value=2.5e+02 Score=26.16 Aligned_cols=50 Identities=18% Similarity=0.403 Sum_probs=21.2
Q ss_pred HHhhccCCCCC---cccCCCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 018690 7 QRQHLQHPTST---SKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQ 63 (352)
Q Consensus 7 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~ 63 (352)
.|.|-..|... .+..++..+-+-.++.|++.| +.-+|..++.-++-+.|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~v~~~F~~~~~eL-------d~~~d~REriik~sRdIt 64 (290)
T 3qb5_K 12 KRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQEL-------DARHDKYERLVKLSRDIT 64 (290)
T ss_dssp -------------------CCSHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccCCCccccCCCCCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34444444333 234555555556677788777 555566655555555554
No 66
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=22.67 E-value=1.1e+02 Score=24.41 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=11.0
Q ss_pred hccCCCCCcccCCCCCcceeehhhhHHHHHHH
Q 018690 10 HLQHPTSTSKAIDPENVKVIEWEDYDQELARL 41 (352)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~rL 41 (352)
|-.|-...||.+.+.+.+-..=..|+.++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~sFEeal~eL 39 (100)
T 1vp7_A 8 HHHHHMASSKQADPQTDARPLPQDFETALAEL 39 (100)
T ss_dssp -----------------CCCBCCSHHHHHHHH
T ss_pred hhHhhhhhcccCCCCcccCCCCCCHHHHHHHH
Confidence 44556667888888877776666788888665
No 67
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.51 E-value=3.2e+02 Score=22.35 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=16.7
Q ss_pred CCCcceeehhhhHHHHHHHhcHHHHH
Q 018690 23 PENVKVIEWEDYDQELARLWSLSSAL 48 (352)
Q Consensus 23 ~~~~~~~~~~~~~~~L~rL~~L~~~i 48 (352)
..+|=+.--+|++.+|-++-+|-..-
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w 50 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRW 50 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666778888887776666553
No 68
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=21.47 E-value=2.8e+02 Score=24.45 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=5.5
Q ss_pred HHHHHHHHhHHHh
Q 018690 130 VARKRLQESNRLL 142 (352)
Q Consensus 130 ~a~~~L~ea~~~L 142 (352)
.++..|..++..+
T Consensus 116 ~a~a~l~~a~~~l 128 (277)
T 2f1m_A 116 AAKAAVETARINL 128 (277)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444444
No 69
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=21.15 E-value=4.7e+02 Score=23.82 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=17.0
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALSQADD 53 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~ 53 (352)
.|..+.+.+.+++.....+.+.+.
T Consensus 80 aw~~~~~e~e~~a~~H~~~a~~L~ 103 (337)
T 2x3v_A 80 AWGAMMTEADKVSELHQEVKNSLL 103 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888887776666655543
No 70
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.63 E-value=6e+02 Score=25.42 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=10.1
Q ss_pred hHhhHHHHHHHHHHHHcCCCCC
Q 018690 239 TALGYIAHVVSLIASYLEVPLR 260 (352)
Q Consensus 239 aALGyvAhlv~lls~YL~VpLp 260 (352)
..+-.+..+..-+=.-||+|.+
T Consensus 349 ~~~e~~l~~~~~il~~LgLpyr 370 (501)
T 1wle_A 349 ELLEEFLSLQMEILTELGLHFR 370 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHCCCcEE
Confidence 3333333333333355888643
No 71
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.52 E-value=3.2e+02 Score=21.60 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018690 102 VEKEDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 102 ~~~~~~~krreeL~~~i~~l~ 122 (352)
..+..+++.+..+...+..|.
T Consensus 40 ~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 40 ELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 72
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.37 E-value=3.8e+02 Score=26.29 Aligned_cols=8 Identities=50% Similarity=0.364 Sum_probs=4.7
Q ss_pred hhhcccee
Q 018690 170 SFLYPVKI 177 (352)
Q Consensus 170 ~~IYPI~~ 177 (352)
.-||.|.|
T Consensus 164 SGvY~I~p 171 (409)
T 1m1j_C 164 SGLYFIKP 171 (409)
T ss_dssp CEEEEECC
T ss_pred CeeEEEec
Confidence 34666665
No 73
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=20.20 E-value=4.4e+02 Score=23.08 Aligned_cols=6 Identities=17% Similarity=-0.014 Sum_probs=2.8
Q ss_pred ceEEec
Q 018690 209 SLTILG 214 (352)
Q Consensus 209 ~~tI~G 214 (352)
.++|.+
T Consensus 160 l~~i~~ 165 (277)
T 2f1m_A 160 LATVQQ 165 (277)
T ss_dssp SEEEEE
T ss_pred eEEEec
Confidence 455543
Done!