Query 018690
Match_columns 352
No_of_seqs 170 out of 218
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 04:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018690.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018690hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 58.4 31 0.0022 25.3 12.7 37 33-69 2-38 (107)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 23.5 1.4E+02 0.01 22.4 9.7 15 57-71 34-48 (144)
3 d2efla1 a.238.1.4 (A:1-288) Fo 22.3 1.8E+02 0.013 23.1 15.8 23 30-52 72-94 (288)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 16.4 1.8E+02 0.013 20.7 9.7 24 101-124 64-87 (107)
5 d1qada_ d.93.1.1 (A:) Phosphat 15.8 30 0.0022 25.1 1.8 18 247-264 78-106 (107)
6 d1vf7a_ f.46.1.1 (A:) Multidru 12.4 2.9E+02 0.021 21.1 7.6 9 128-136 100-108 (237)
7 d1t01a1 a.24.9.1 (A:1-125) Vin 12.2 1.1E+02 0.0077 23.3 4.2 82 56-137 14-97 (125)
8 d2p90a1 c.56.8.1 (A:6-274) Hyp 10.1 82 0.0059 26.3 3.2 34 37-70 215-248 (269)
9 d1st6a4 a.24.9.1 (A:372-488) V 9.8 2.1E+02 0.015 21.4 5.1 48 75-122 63-110 (117)
10 d1ez3a_ a.47.2.1 (A:) Syntaxin 9.6 3E+02 0.022 19.6 9.0 66 48-113 12-77 (124)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=58.36 E-value=31 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=28.5
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018690 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (352)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~ 69 (352)
.+++.++++..|..-++.+...+..|..++++.=.+.
T Consensus 2 ~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl 38 (107)
T d1fxka_ 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKAL 38 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888877654443
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=23.49 E-value=1.4e+02 Score=22.36 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhHH
Q 018690 57 TLQQKLQSLIQVKAE 71 (352)
Q Consensus 57 ~L~~qI~~~L~~~~~ 71 (352)
.+.++++..|+...+
T Consensus 34 el~~el~~~l~e~~~ 48 (144)
T d1gs9a_ 34 QVTQELRALMDETMK 48 (144)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666665443
No 3
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.26 E-value=1.8e+02 Score=23.14 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=14.0
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHH
Q 018690 30 EWEDYDQELARLWSLSSALSQAD 52 (352)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~ 52 (352)
.|..+.+....++.....+.+.+
T Consensus 72 ~~~~~~~~~~~~a~~h~~~a~~l 94 (288)
T d2efla1 72 AFISNLNEMNDYAGQHEVISENM 94 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777666655555544443
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.38 E-value=1.8e+02 Score=20.71 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018690 101 KVEKEDAKNQEERLSMEVRSLLVA 124 (352)
Q Consensus 101 ~~~~~~~~krreeL~~~i~~l~~~ 124 (352)
..+...+.++.+.|...|.++...
T Consensus 64 ~e~~~~l~~~~e~l~~~i~~l~~q 87 (107)
T d1fxka_ 64 DELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544443
No 5
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.75 E-value=30 Score=25.07 Aligned_cols=18 Identities=39% Similarity=0.759 Sum_probs=12.1
Q ss_pred HHHHHHHH-----------cCCCCCccee
Q 018690 247 VVSLIASY-----------LEVPLRYPLR 264 (352)
Q Consensus 247 lv~lls~Y-----------L~VpLpYPi~ 264 (352)
|..||.+| |.++|+|||.
T Consensus 78 l~~LI~~Y~~~~l~~~~~~l~~~L~~Pv~ 106 (107)
T d1qada_ 78 LKELVLHYQHTSLVQHNDSLNVTLAYPVY 106 (107)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCCCCEETT
T ss_pred HHHHHHHHHhCccccccCCCceEcccccc
Confidence 45566666 5677888873
No 6
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.36 E-value=2.9e+02 Score=21.12 Aligned_cols=9 Identities=33% Similarity=0.420 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 018690 128 LSVARKRLQ 136 (352)
Q Consensus 128 l~~a~~~L~ 136 (352)
+..++..|.
T Consensus 100 l~~a~~~l~ 108 (237)
T d1vf7a_ 100 VEQARINLR 108 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhhc
Confidence 334444443
No 7
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=12.19 E-value=1.1e+02 Score=23.27 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHH
Q 018690 56 QTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN--QEERLSMEVRSLLVAGTALSVARK 133 (352)
Q Consensus 56 ~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~k--rreeL~~~i~~l~~~~~~l~~a~~ 133 (352)
+=|..||-.++--..+.-........+..-++....+++....--+...++... =++++.....++..+|..+..+..
T Consensus 14 ePl~~QVstLV~~~e~~~~~~~~~~~l~~~~~aV~~Av~~fv~vG~~~a~~s~d~~lk~eM~~A~~~vr~ag~~l~~aa~ 93 (125)
T d1t01a1 14 EPVAQQISHLVIMHEEGEVDGKAIPDLTAPVSAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVRAAQ 93 (125)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777775443332223333333334444455555443333333322211 345555555666666666665555
Q ss_pred HHHH
Q 018690 134 RLQE 137 (352)
Q Consensus 134 ~L~e 137 (352)
.+.+
T Consensus 94 ~l~~ 97 (125)
T d1t01a1 94 MLQA 97 (125)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 8
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=10.07 E-value=82 Score=26.35 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=21.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018690 37 ELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (352)
Q Consensus 37 ~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~ 70 (352)
+|.++.+|+=-+.+..++-+.++.+|+++++++.
T Consensus 215 ~l~~~~gl~id~~~L~e~Ae~~e~~i~~l~e~~~ 248 (269)
T d2p90a1 215 SIADSADLNLPLLALERDAEKVHRQLMEQTEESS 248 (269)
T ss_dssp HHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHCCCCChHHHHHHHHHHHHHHHHHHhhCH
Confidence 3444444444456667777777777777777654
No 9
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.77 E-value=2.1e+02 Score=21.44 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=23.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018690 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (352)
Q Consensus 75 ~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~ 122 (352)
..++++.+-++|...+..=.--.-+.+.+.+++..+-.+|+.++..++
T Consensus 63 lc~ei~~lt~qLadLr~~GkG~sPeA~~lA~qi~~kL~~L~~~v~~Av 110 (117)
T d1st6a4 63 SLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAV 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444433333222222345555666666666666665433
No 10
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.64 E-value=3e+02 Score=19.59 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018690 48 LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (352)
Q Consensus 48 iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krree 113 (352)
+++.....+.|...++.+=......+......+++..+++.....+...-...+...+.+++..++
T Consensus 12 V~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~ 77 (124)
T d1ez3a_ 12 VEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 77 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!