Query 018691
Match_columns 352
No_of_seqs 129 out of 141
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07816 DUF1645: Protein of u 100.0 1.3E-36 2.8E-41 276.4 9.4 138 179-323 49-193 (193)
2 PF10378 RRM: Putative RRM dom 29.8 57 0.0012 25.3 2.7 30 10-39 3-39 (56)
3 KOG2991 Splicing regulator [RN 14.8 1.2E+02 0.0026 30.4 2.3 42 16-57 5-54 (330)
4 PRK13754 conjugal transfer fer 10.4 1.1E+02 0.0024 28.9 0.6 13 108-120 86-98 (186)
5 PF08537 NBP1: Fungal Nap bind 8.8 1.9E+02 0.0041 29.6 1.5 25 28-55 245-269 (323)
6 PF01954 DUF104: Protein of un 7.5 1.8E+02 0.0038 22.5 0.5 15 108-122 7-21 (60)
7 PLN03148 Blue copper-like prot 6.2 5.9E+02 0.013 23.5 3.3 9 1-9 111-119 (167)
8 KOG2008 BTK-associated SH3-dom 6.0 6.5E+02 0.014 26.2 3.8 36 19-56 271-307 (426)
9 COG4675 MdpB Microcystin-depen 5.7 2.9E+02 0.0062 25.7 1.0 25 90-122 10-34 (170)
10 smart00337 BCL BCL (B-Cell lym 5.6 2.5E+02 0.0055 23.0 0.5 10 106-115 38-47 (100)
No 1
>PF07816 DUF1645: Protein of unknown function (DUF1645); InterPro: IPR012442 These sequences are derived from a number of hypothetical plant proteins. The region in question is approximately 270 amino acids long. Some members of this family are annotated as yeast pheromone receptor proteins AR781 but no literature was found to support this.
Probab=100.00 E-value=1.3e-36 Score=276.36 Aligned_cols=138 Identities=50% Similarity=0.675 Sum_probs=89.8
Q ss_pred CCCCCCCCCCCCCcCCCccchhhhhhhhhhhhcccccCCCCCCCCcccchhhhhccccccccccch-hccccccCCCCC-
Q 018691 179 SSRKGTRSLSPIRVSDIIDEQEDNSQAARIIITSTRSRSNSNNSKSYASSILSAISFSNKKWKLKD-LLFRSASEGRAT- 256 (352)
Q Consensus 179 s~rR~tRSlSP~R~~~~~~~~e~~~~~~~~~~~~~~s~s~~s~sss~~Ss~sss~~~~SkRWRLrD-LL~RS~SdGk~~- 256 (352)
..|+++|+|+|+|..+..+...........+...+... ..++. .++..++++++++||||+| |||||+||||++
T Consensus 49 s~r~~~rslsp~r~~~~~~~~~~~~~~~~~~~p~~~~~-~~s~~---~~~~~SsSs~ssrRWrLrDlLL~RS~SdGk~~~ 124 (193)
T PF07816_consen 49 SLRRPLRSLSPERRSSSSSSSSDESDELEGVPPSTYCS-SSSPS---SSSSSSSSSGSSRRWRLRDLLLFRSHSDGKEKS 124 (193)
T ss_pred hcccccccCCccccccCCCcccccccccccCCCCcccc-ccCcc---ccccCCcCCCCcceeecchhhccccccCCCCCC
Confidence 38999999999998763222222111111111111000 01111 1112345678899999999 588999999999
Q ss_pred -CCCCCccccccccccccccccCCCCCcccCC--CCCCcCCCCC--CCccchhhhhhhhhhhhhhhcccCCC
Q 018691 257 -SPDPLRKFAVLSKKEVMVDDAKNSSFRSTDS--SSGSVSRRRP--PVSAHELHYTANRAVSEELKRKTFLP 323 (352)
Q Consensus 257 -~kdp~~k~s~~~k~~~~~~~~k~~s~rs~~s--~~g~~~k~~g--~~SAHE~~Y~~nra~~ee~rRrTfLP 323 (352)
.+||++++.++++.. +++++.+++.+.. ..++.+++++ .+||||+||++|||++||||||||||
T Consensus 125 ~~k~p~~k~~~~~~~~---~~~~~~~~~s~~~g~~~~~~~~~r~~~~~SAHe~~Y~~~ra~~e~~kRrtfLP 193 (193)
T PF07816_consen 125 PSKDPLRKYSPLSKPP---SPVKKASFKSKESGSGSASKGKRRGKTAASAHELHYTANRAASEEMKRRTFLP 193 (193)
T ss_pred CCCCchhccccccccc---cccccCCCCCcccccccCCcCcccCCCccchhHhhhhhccccccCCCccCCCC
Confidence 789999998887643 5666666554432 1111233443 59999999999999999999999998
No 2
>PF10378 RRM: Putative RRM domain ; InterPro: IPR018835 This entry represents a putative RNA-binding domain found only in fungi. It occurs in proteins annotated as Nrd1, which are known to carry RNA recogntion motif (RRM) domains. It is not homologous with any of the other RRM domains, e.g. IPR000504 from INTERPRO.
Probab=29.82 E-value=57 Score=25.33 Aligned_cols=30 Identities=30% Similarity=0.831 Sum_probs=21.4
Q ss_pred CCCCCCCCCcCCCCC-------CCCCcccCCCCCCCC
Q 018691 10 PAAAPTSMDFNFDSN-------CSSPYITAPSSPQRF 39 (352)
Q Consensus 10 p~~~~~~~df~fds~-------cssP~~sAPSSP~rf 39 (352)
|..|+++-|.+|.-. .++||++-|-+|..|
T Consensus 3 p~~P~TpfD~~yg~slLPS~LL~gSPf~~~P~~~~~~ 39 (56)
T PF10378_consen 3 PNTPPTPFDMAYGQSLLPSHLLMGSPFVSQPGTPSPF 39 (56)
T ss_pred CCCCCCccccccccccchhhhhccCCcccCCCCcccc
Confidence 334566777777433 489999999888775
No 3
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=14.78 E-value=1.2e+02 Score=30.40 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=30.7
Q ss_pred CCCcCCCCCCCCCcccCCCCCCC-CCC-------CceeecCCCCccchhh
Q 018691 16 SMDFNFDSNCSSPYITAPSSPQR-FGN-------SLFFSAPASPTRISAF 57 (352)
Q Consensus 16 ~~df~fds~cssP~~sAPSSP~r-fg~-------~~F~SAPtSPsr~~~~ 57 (352)
.||.||.+.|+.-|.+-||.--| ||+ -|=.--||+|+|..-+
T Consensus 5 s~~~D~~~~~~~a~~t~~~~n~~s~~dl~d~e~d~~~s~~~A~~~~tGm~ 54 (330)
T KOG2991|consen 5 SQDDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTTVAPGVRTGMI 54 (330)
T ss_pred ccccccCCccchhhcccCCcchhhccCccccccccccCCCCCCCCccchh
Confidence 58999999999999999985544 444 1444567788776654
No 4
>PRK13754 conjugal transfer fertility inhibition protein FinO; Provisional
Probab=10.45 E-value=1.1e+02 Score=28.90 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=11.4
Q ss_pred hhccCCceecCCC
Q 018691 108 ELFDGGKIRPLKL 120 (352)
Q Consensus 108 ELF~~G~IrPl~~ 120 (352)
+||.+|+++||+-
T Consensus 86 ~lF~~g~~kPLKI 98 (186)
T PRK13754 86 GLFDGDTPRLLAC 98 (186)
T ss_pred HhcCCCCCCcccc
Confidence 6999999999973
No 5
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=8.85 E-value=1.9e+02 Score=29.56 Aligned_cols=25 Identities=48% Similarity=0.608 Sum_probs=18.6
Q ss_pred CcccCCCCCCCCCCCceeecCCCCccch
Q 018691 28 PYITAPSSPQRFGNSLFFSAPASPTRIS 55 (352)
Q Consensus 28 P~~sAPSSP~rfg~~~F~SAPtSPsr~~ 55 (352)
|-..=|+||.|+.++.|+| ||+|..
T Consensus 245 P~~~L~pSP~R~~npL~TS---SP~r~~ 269 (323)
T PF08537_consen 245 PERDLPPSPRRPVNPLFTS---SPMRKP 269 (323)
T ss_pred CcccCCCCCCcCCCCCccc---Cccccc
Confidence 5555677999998889987 556653
No 6
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=7.47 E-value=1.8e+02 Score=22.51 Aligned_cols=15 Identities=20% Similarity=0.663 Sum_probs=10.7
Q ss_pred hhccCCceecCCCCC
Q 018691 108 ELFDGGKIRPLKLPA 122 (352)
Q Consensus 108 ELF~~G~IrPl~~~~ 122 (352)
-+|.||-+|||.+..
T Consensus 7 aiYe~GvlkPl~~~~ 21 (60)
T PF01954_consen 7 AIYENGVLKPLEPVD 21 (60)
T ss_dssp EEEETTEEEECS---
T ss_pred EEEECCEEEECCCCC
Confidence 478999999998775
No 7
>PLN03148 Blue copper-like protein; Provisional
Probab=6.18 E-value=5.9e+02 Score=23.55 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=6.1
Q ss_pred CcceEEeeC
Q 018691 1 MEMEVVMPM 9 (352)
Q Consensus 1 ~~mev~~~~ 9 (352)
|+|-|.|..
T Consensus 111 mKl~I~V~~ 119 (167)
T PLN03148 111 MKVTILVHP 119 (167)
T ss_pred CEEEEEEcC
Confidence 677777753
No 8
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=6.02 E-value=6.5e+02 Score=26.17 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=24.6
Q ss_pred cCC-CCCCCCCcccCCCCCCCCCCCceeecCCCCccchh
Q 018691 19 FNF-DSNCSSPYITAPSSPQRFGNSLFFSAPASPTRISA 56 (352)
Q Consensus 19 f~f-ds~cssP~~sAPSSP~rfg~~~F~SAPtSPsr~~~ 56 (352)
.+| |..|++ |++-=-+-++--. .|-|-|++|+....
T Consensus 271 ~~~~dds~~~-~~~e~~~e~~~~~-s~~sg~~~~s~~~~ 307 (426)
T KOG2008|consen 271 EAFEDDSCSN-FVSEDDSETQSVS-SFSSGPTSPSEMPD 307 (426)
T ss_pred hhcccchhhc-ccccccccccccc-cccCCCCCHHhccc
Confidence 455 457888 6766555555432 78899999988653
No 9
>COG4675 MdpB Microcystin-dependent protein [Function unknown]
Probab=5.74 E-value=2.9e+02 Score=25.67 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=18.1
Q ss_pred CceeeccCCcccccCchhhhccCCceecCCCCC
Q 018691 90 DFEFDFSGQLERTSLSADELFDGGKIRPLKLPA 122 (352)
Q Consensus 90 dFeF~fs~~~~~~~~sAdELF~~G~IrPl~~~~ 122 (352)
=|.|.|... +=.||+||+.|+..--
T Consensus 10 lfa~nfaP~--------gWa~C~GqLlpIsqn~ 34 (170)
T COG4675 10 LFAFNFAPK--------GWAFCDGQLLPISQNT 34 (170)
T ss_pred EEecCCCCc--------chhccCCeEeechhhh
Confidence 366776544 6799999999996443
No 10
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=5.59 E-value=2.5e+02 Score=23.04 Aligned_cols=10 Identities=60% Similarity=0.966 Sum_probs=8.5
Q ss_pred hhhhccCCce
Q 018691 106 ADELFDGGKI 115 (352)
Q Consensus 106 AdELF~~G~I 115 (352)
|+|||.+|+|
T Consensus 38 a~~lf~dg~i 47 (100)
T smart00337 38 ATELFSDGNI 47 (100)
T ss_pred HHHHHccCCC
Confidence 8999999864
Done!