Query 018691
Match_columns 352
No_of_seqs 129 out of 141
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wh0_Q Pkcev3, protein kinase 13.3 52 0.0018 21.3 0.5 8 46-53 5-12 (31)
2 2wh6_A Early antigen protein R 9.3 82 0.0028 28.1 0.6 10 106-115 100-109 (173)
3 2vgp_C Inner centromere protei 7.5 96 0.0033 21.7 0.2 14 104-119 22-35 (43)
4 1loi_A Cyclic 3',5'-AMP specif 5.0 46 0.0016 20.8 -2.3 14 16-30 3-16 (26)
5 2nwt_A UPF0165 protein AF_2212 4.7 2.3E+02 0.0079 21.7 0.9 16 107-122 6-21 (69)
6 1k3k_A Functional anti-apoptot 4.5 2.2E+02 0.0075 24.5 0.7 10 106-115 73-82 (158)
7 2w3l_A BCL2-XL, apoptosis regu 4.5 2.2E+02 0.0076 23.6 0.7 8 106-113 72-79 (144)
8 3ukw_C Bimax1 peptide; arm rep 4.2 3.4E+02 0.012 17.1 1.2 14 191-204 8-21 (28)
9 2vof_A BCL-2-related protein A 4.1 2.4E+02 0.0083 23.8 0.6 10 106-115 80-89 (157)
10 3sbu_A Hypothetical NTF2-like 3.5 2.1E+02 0.0073 27.0 -0.3 10 103-112 34-43 (261)
No 1
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=13.35 E-value=52 Score=21.32 Aligned_cols=8 Identities=63% Similarity=0.908 Sum_probs=5.9
Q ss_pred ecCCCCcc
Q 018691 46 SAPASPTR 53 (352)
Q Consensus 46 SAPtSPsr 53 (352)
||||||--
T Consensus 5 saptspcd 12 (31)
T 2wh0_Q 5 SAPTSPCD 12 (31)
T ss_pred cCCCCchH
Confidence 78888854
No 2
>2wh6_A Early antigen protein R; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Human herpesvirus 4} PDB: 2v6q_A 2xpx_A 1q59_A
Probab=9.34 E-value=82 Score=28.12 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=8.7
Q ss_pred hhhhccCCce
Q 018691 106 ADELFDGGKI 115 (352)
Q Consensus 106 AdELF~~G~I 115 (352)
|+|||.+|.|
T Consensus 100 A~ELF~dG~I 109 (173)
T 2wh6_A 100 FLEIFHRGDP 109 (173)
T ss_dssp HHHHHSSSCC
T ss_pred HHHHHhCCCC
Confidence 9999999863
No 3
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=7.48 E-value=96 Score=21.69 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.8
Q ss_pred CchhhhccCCceecCC
Q 018691 104 LSADELFDGGKIRPLK 119 (352)
Q Consensus 104 ~sAdELF~~G~IrPl~ 119 (352)
.-+|.+| |.|+|++
T Consensus 22 ~D~d~iF--G~I~pp~ 35 (43)
T 2vgp_C 22 IDVDRMY--GTIDSPK 35 (43)
T ss_dssp CCHHHHT--TTSCCCC
T ss_pred CCHHHHc--CCCCCcC
Confidence 3579999 8888775
No 4
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=5.03 E-value=46 Score=20.84 Aligned_cols=14 Identities=43% Similarity=1.046 Sum_probs=9.4
Q ss_pred CCCcCCCCCCCCCcc
Q 018691 16 SMDFNFDSNCSSPYI 30 (352)
Q Consensus 16 ~~df~fds~cssP~~ 30 (352)
.+|| |-.+||-|++
T Consensus 3 lvdf-fcetcskpwl 16 (26)
T 1loi_A 3 LVDF-FCETCSKPWL 16 (26)
T ss_dssp HHHH-HHHTSSCTTG
T ss_pred hHHH-HHHhcCCchh
Confidence 3455 5568888876
No 5
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=4.71 E-value=2.3e+02 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.630 Sum_probs=13.1
Q ss_pred hhhccCCceecCCCCC
Q 018691 107 DELFDGGKIRPLKLPA 122 (352)
Q Consensus 107 dELF~~G~IrPl~~~~ 122 (352)
+=+|.||-++||.+..
T Consensus 6 eAiYEnGVfkPLe~l~ 21 (69)
T 2nwt_A 6 EAVYENGVFKPLQKVD 21 (69)
T ss_dssp EEEEETTEEEESSCCC
T ss_pred EEEEECCEEeECCcCC
Confidence 3479999999998764
No 6
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=4.54 E-value=2.2e+02 Score=24.50 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=8.7
Q ss_pred hhhhccCCce
Q 018691 106 ADELFDGGKI 115 (352)
Q Consensus 106 AdELF~~G~I 115 (352)
|+|||.+|.|
T Consensus 73 a~elF~DG~i 82 (158)
T 1k3k_A 73 MLQVSGDGNM 82 (158)
T ss_dssp HHHHCSSCSC
T ss_pred HHHHhcCCCC
Confidence 8999999855
No 7
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=4.47 E-value=2.2e+02 Score=23.55 Aligned_cols=8 Identities=50% Similarity=0.991 Sum_probs=7.5
Q ss_pred hhhhccCC
Q 018691 106 ADELFDGG 113 (352)
Q Consensus 106 AdELF~~G 113 (352)
|+|||.+|
T Consensus 72 a~elF~dG 79 (144)
T 2w3l_A 72 VEELFRDG 79 (144)
T ss_dssp HHHHTTTC
T ss_pred HHHHhcCC
Confidence 89999998
No 8
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=4.23 E-value=3.4e+02 Score=17.13 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=9.4
Q ss_pred CcCCCccchhhhhh
Q 018691 191 RVSDIIDEQEDNSQ 204 (352)
Q Consensus 191 R~~~~~~~~e~~~~ 204 (352)
|...++|+++++.+
T Consensus 8 rkrplewdedeepp 21 (28)
T 3ukw_C 8 RKRPLEWDEDEEPP 21 (28)
T ss_dssp CCCCCCCCGGGSCC
T ss_pred ccCCcccccccCcc
Confidence 45567899877543
No 9
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=4.08 E-value=2.4e+02 Score=23.80 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=8.6
Q ss_pred hhhhccCCce
Q 018691 106 ADELFDGGKI 115 (352)
Q Consensus 106 AdELF~~G~I 115 (352)
|+|||.+|.|
T Consensus 80 a~elF~dg~i 89 (157)
T 2vof_A 80 MEKEFEDGII 89 (157)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHhcCCCC
Confidence 8999999854
No 10
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=3.45 E-value=2.1e+02 Score=27.00 Aligned_cols=10 Identities=50% Similarity=0.793 Sum_probs=8.0
Q ss_pred cCchhhhccC
Q 018691 103 SLSADELFDG 112 (352)
Q Consensus 103 ~~sAdELF~~ 112 (352)
+.+|||||++
T Consensus 34 PkaADelFDD 43 (261)
T 3sbu_A 34 PIEADESFDD 43 (261)
T ss_dssp CCGGGGSHHH
T ss_pred ccchhhhHHH
Confidence 4579999975
Done!