Query 018692
Match_columns 352
No_of_seqs 240 out of 2151
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.7E-35 1.2E-39 302.2 25.1 276 58-348 22-318 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 2.3E-25 5E-30 206.1 11.5 156 191-349 1-159 (287)
3 PLN03210 Resistant to P. syrin 99.8 1.5E-18 3.2E-23 187.9 17.9 151 186-348 184-352 (1153)
4 PRK00411 cdc6 cell division co 98.8 4.5E-08 9.7E-13 94.7 12.4 116 186-303 30-149 (394)
5 TIGR03015 pepcterm_ATPase puta 98.8 2.5E-07 5.3E-12 84.7 16.6 111 195-313 28-145 (269)
6 PF05729 NACHT: NACHT domain 98.8 2.7E-08 5.9E-13 83.7 9.5 128 210-349 1-152 (166)
7 TIGR02928 orc1/cdc6 family rep 98.7 5.8E-08 1.3E-12 92.9 10.9 113 186-303 15-140 (365)
8 PF13173 AAA_14: AAA domain 98.7 2.3E-08 4.9E-13 81.2 6.1 95 209-328 2-96 (128)
9 cd01128 rho_factor Transcripti 98.7 3E-08 6.5E-13 89.5 6.8 91 209-303 16-114 (249)
10 PF13401 AAA_22: AAA domain; P 98.7 8.1E-08 1.8E-12 77.8 7.9 112 209-328 4-123 (131)
11 cd00009 AAA The AAA+ (ATPases 98.6 4.8E-07 1E-11 73.8 11.1 120 189-328 1-127 (151)
12 PF13191 AAA_16: AAA ATPase do 98.6 9.7E-08 2.1E-12 82.0 6.3 78 187-266 1-84 (185)
13 PF01637 Arch_ATPase: Archaeal 98.5 2.8E-07 6.1E-12 81.9 7.7 43 188-232 1-43 (234)
14 PRK09376 rho transcription ter 98.5 2.1E-07 4.6E-12 88.1 7.0 102 196-303 157-267 (416)
15 PTZ00202 tuzin; Provisional 98.3 1.2E-05 2.5E-10 77.2 13.2 128 186-328 262-398 (550)
16 TIGR00767 rho transcription te 98.3 3.3E-06 7.1E-11 80.4 9.3 92 209-303 168-266 (415)
17 PRK05564 DNA polymerase III su 98.3 1E-05 2.2E-10 75.9 12.5 120 186-328 4-130 (313)
18 PRK06893 DNA replication initi 98.3 3.6E-06 7.9E-11 75.3 8.5 37 209-247 39-75 (229)
19 PRK13342 recombination factor 98.3 3E-06 6.4E-11 82.6 8.5 108 186-326 12-124 (413)
20 PRK12402 replication factor C 98.2 1.2E-05 2.6E-10 76.0 10.8 44 186-231 15-58 (337)
21 COG1474 CDC6 Cdc6-related prot 98.2 1.1E-05 2.4E-10 76.9 9.7 112 186-303 17-134 (366)
22 PRK07003 DNA polymerase III su 98.1 1.8E-05 3.9E-10 80.7 11.2 154 186-348 16-179 (830)
23 TIGR02903 spore_lon_C ATP-depe 98.1 7.9E-05 1.7E-09 76.1 16.0 139 185-326 153-327 (615)
24 PRK11331 5-methylcytosine-spec 98.1 1.7E-05 3.6E-10 76.8 10.3 107 186-303 175-283 (459)
25 PTZ00112 origin recognition co 98.1 2E-05 4.3E-10 81.1 11.2 115 186-303 755-880 (1164)
26 PRK14961 DNA polymerase III su 98.1 3.5E-05 7.5E-10 73.8 12.3 153 186-348 16-179 (363)
27 PRK14949 DNA polymerase III su 98.1 2.3E-05 5E-10 81.3 10.5 140 185-348 15-179 (944)
28 PRK14963 DNA polymerase III su 98.0 3.6E-05 7.7E-10 76.6 11.1 153 186-348 14-176 (504)
29 PRK04841 transcriptional regul 98.0 4.8E-05 1E-09 81.4 12.9 127 195-328 19-159 (903)
30 KOG2543 Origin recognition com 98.0 2.8E-05 6E-10 72.7 9.5 113 186-303 6-126 (438)
31 PRK14957 DNA polymerase III su 98.0 3.5E-05 7.7E-10 77.0 10.6 121 185-328 15-156 (546)
32 PRK00440 rfc replication facto 98.0 9.7E-05 2.1E-09 69.2 12.0 47 184-232 15-61 (319)
33 PLN03025 replication factor C 97.9 5.4E-05 1.2E-09 71.2 9.7 122 186-328 13-136 (319)
34 PRK14960 DNA polymerase III su 97.9 7.6E-05 1.6E-09 75.4 10.5 135 186-328 15-155 (702)
35 TIGR00635 ruvB Holliday juncti 97.9 5.4E-05 1.2E-09 70.6 9.1 47 186-232 4-53 (305)
36 PRK13341 recombination factor 97.9 5.4E-05 1.2E-09 78.3 9.6 51 185-239 27-80 (725)
37 PRK04195 replication factor C 97.9 8.1E-05 1.8E-09 74.0 10.3 117 186-328 14-137 (482)
38 PRK00080 ruvB Holliday junctio 97.9 8.2E-05 1.8E-09 70.3 9.8 47 186-232 25-74 (328)
39 PHA02544 44 clamp loader, smal 97.9 9.1E-05 2E-09 69.5 10.1 46 186-232 21-66 (316)
40 PRK12323 DNA polymerase III su 97.9 7.7E-05 1.7E-09 75.2 9.9 140 186-328 16-161 (700)
41 smart00382 AAA ATPases associa 97.9 0.00011 2.3E-09 59.1 9.2 86 210-303 3-89 (148)
42 PRK08116 hypothetical protein; 97.9 4.8E-05 1.1E-09 69.7 7.9 99 211-328 116-218 (268)
43 PRK06645 DNA polymerase III su 97.8 0.00019 4.1E-09 71.3 12.3 139 185-328 20-165 (507)
44 COG2256 MGS1 ATPase related to 97.8 6.1E-05 1.3E-09 71.0 8.3 90 208-328 47-140 (436)
45 PRK14962 DNA polymerase III su 97.8 0.00016 3.6E-09 71.3 11.5 45 186-231 14-58 (472)
46 PRK08118 topology modulation p 97.8 9.7E-06 2.1E-10 68.9 2.5 35 210-244 2-37 (167)
47 PRK14958 DNA polymerase III su 97.8 0.00012 2.6E-09 73.0 10.5 121 186-328 16-156 (509)
48 PRK14951 DNA polymerase III su 97.8 0.00016 3.4E-09 73.4 11.4 139 185-328 15-161 (618)
49 PRK05896 DNA polymerase III su 97.8 0.00013 2.8E-09 73.3 10.3 47 184-231 14-60 (605)
50 PRK07994 DNA polymerase III su 97.8 0.00013 2.7E-09 74.3 10.2 155 185-348 15-179 (647)
51 TIGR01242 26Sp45 26S proteasom 97.8 6.6E-05 1.4E-09 72.0 7.9 52 186-239 122-184 (364)
52 PRK07940 DNA polymerase III su 97.8 0.00021 4.6E-09 68.9 11.2 46 186-231 5-58 (394)
53 PRK14964 DNA polymerase III su 97.8 0.00016 3.5E-09 71.4 10.4 121 185-328 12-153 (491)
54 TIGR03420 DnaA_homol_Hda DnaA 97.8 4.9E-05 1.1E-09 67.6 5.9 58 186-247 15-74 (226)
55 PF04665 Pox_A32: Poxvirus A32 97.7 0.0001 2.2E-09 66.0 7.3 37 210-248 14-50 (241)
56 PRK14956 DNA polymerase III su 97.7 0.00013 2.9E-09 71.4 8.2 140 185-328 17-158 (484)
57 PRK14955 DNA polymerase III su 97.7 0.00036 7.7E-09 67.7 10.6 141 186-328 16-164 (397)
58 COG1373 Predicted ATPase (AAA+ 97.6 0.00043 9.3E-09 67.1 11.1 90 211-328 39-128 (398)
59 PRK08691 DNA polymerase III su 97.6 0.00035 7.6E-09 71.2 10.6 45 186-231 16-60 (709)
60 PRK14969 DNA polymerase III su 97.6 0.00057 1.2E-08 68.6 12.1 45 186-231 16-60 (527)
61 PRK08727 hypothetical protein; 97.6 0.00021 4.5E-09 64.2 8.0 57 186-246 19-76 (233)
62 KOG2028 ATPase related to the 97.6 0.00023 5E-09 66.3 8.2 114 186-328 138-258 (554)
63 PRK07764 DNA polymerase III su 97.6 0.00036 7.9E-09 73.2 10.5 133 186-328 15-157 (824)
64 PRK14970 DNA polymerase III su 97.6 0.00063 1.4E-08 65.3 11.5 45 186-231 17-61 (367)
65 TIGR02397 dnaX_nterm DNA polym 97.6 0.00068 1.5E-08 64.6 11.6 47 184-231 12-58 (355)
66 KOG2227 Pre-initiation complex 97.5 0.00044 9.5E-09 66.4 9.2 114 186-303 150-267 (529)
67 CHL00181 cbbX CbbX; Provisiona 97.5 0.00079 1.7E-08 62.3 10.8 45 187-231 24-81 (287)
68 PRK14952 DNA polymerase III su 97.5 0.00079 1.7E-08 68.1 11.5 45 186-231 13-57 (584)
69 TIGR00678 holB DNA polymerase 97.5 0.0016 3.4E-08 56.3 11.7 38 291-328 95-133 (188)
70 PRK14954 DNA polymerase III su 97.5 0.00097 2.1E-08 67.9 11.7 143 185-328 15-164 (620)
71 PRK10536 hypothetical protein; 97.5 0.00069 1.5E-08 61.1 9.3 54 186-243 55-108 (262)
72 PRK09111 DNA polymerase III su 97.5 0.00084 1.8E-08 68.2 11.0 45 186-231 24-68 (598)
73 TIGR02639 ClpA ATP-dependent C 97.5 0.00046 9.9E-09 72.2 9.2 128 186-328 454-601 (731)
74 PRK03992 proteasome-activating 97.5 0.00059 1.3E-08 66.0 9.3 46 186-231 131-187 (389)
75 TIGR02880 cbbX_cfxQ probable R 97.5 0.00098 2.1E-08 61.6 10.3 122 187-328 23-167 (284)
76 PF00004 AAA: ATPase family as 97.5 0.00022 4.7E-09 57.3 5.2 21 212-232 1-21 (132)
77 PRK05642 DNA replication initi 97.4 0.00039 8.5E-09 62.4 7.3 23 209-231 45-67 (234)
78 PRK14950 DNA polymerase III su 97.4 0.0013 2.9E-08 66.9 11.9 137 185-328 15-157 (585)
79 TIGR00763 lon ATP-dependent pr 97.4 0.0023 4.9E-08 67.4 14.0 96 142-239 262-375 (775)
80 PRK07471 DNA polymerase III su 97.4 0.002 4.2E-08 61.7 12.3 157 186-348 19-201 (365)
81 PRK08084 DNA replication initi 97.4 0.00052 1.1E-08 61.7 7.9 23 209-231 45-67 (235)
82 PRK09087 hypothetical protein; 97.4 0.00065 1.4E-08 60.7 8.4 24 209-232 44-67 (226)
83 PRK08181 transposase; Validate 97.4 0.00032 7E-09 64.1 6.5 96 210-328 107-206 (269)
84 PF05621 TniB: Bacterial TniB 97.4 0.0016 3.6E-08 59.8 11.0 106 193-303 44-156 (302)
85 PRK12377 putative replication 97.4 0.00064 1.4E-08 61.4 8.1 99 209-328 101-203 (248)
86 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00074 1.6E-08 60.4 8.4 96 207-303 17-126 (235)
87 PF05673 DUF815: Protein of un 97.4 0.0015 3.2E-08 58.4 10.1 102 186-316 27-132 (249)
88 CHL00095 clpC Clp protease ATP 97.4 0.00054 1.2E-08 72.5 8.7 44 186-231 179-222 (821)
89 PF05496 RuvB_N: Holliday junc 97.4 0.0002 4.3E-09 63.1 4.2 52 186-239 24-78 (233)
90 PRK07952 DNA replication prote 97.4 0.0009 2E-08 60.3 8.5 113 196-328 86-202 (244)
91 TIGR02881 spore_V_K stage V sp 97.4 0.00062 1.3E-08 62.1 7.6 46 186-231 6-64 (261)
92 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00039 8.4E-09 73.6 6.9 131 186-328 566-716 (852)
93 PF05659 RPW8: Arabidopsis bro 97.3 0.0021 4.6E-08 53.2 9.8 110 26-160 5-114 (147)
94 PRK14953 DNA polymerase III su 97.3 0.0023 4.9E-08 63.6 11.8 46 185-231 15-60 (486)
95 PRK14965 DNA polymerase III su 97.3 0.0019 4.1E-08 65.6 11.1 45 186-231 16-60 (576)
96 PRK14971 DNA polymerase III su 97.3 0.0025 5.4E-08 65.1 12.0 48 183-231 14-61 (614)
97 PRK14959 DNA polymerase III su 97.3 0.0019 4.2E-08 65.3 10.8 46 186-232 16-61 (624)
98 PRK09361 radB DNA repair and r 97.3 0.0011 2.4E-08 59.0 8.1 101 198-302 12-117 (225)
99 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4.1E-08 68.7 11.2 131 186-328 565-715 (852)
100 PRK14087 dnaA chromosomal repl 97.3 0.0013 2.9E-08 64.7 9.4 100 209-328 141-246 (450)
101 cd01133 F1-ATPase_beta F1 ATP 97.3 0.0005 1.1E-08 62.7 5.8 93 209-303 69-174 (274)
102 COG0470 HolB ATPase involved i 97.3 0.0032 6.8E-08 59.0 11.6 122 187-328 2-146 (325)
103 PRK10787 DNA-binding ATP-depen 97.3 0.003 6.5E-08 66.3 12.3 95 143-239 265-377 (784)
104 PRK09112 DNA polymerase III su 97.3 0.0041 8.9E-08 59.2 12.2 158 186-349 23-202 (351)
105 PF13177 DNA_pol3_delta2: DNA 97.3 0.0037 7.9E-08 52.8 10.7 136 190-348 1-162 (162)
106 PRK10865 protein disaggregatio 97.2 0.0016 3.6E-08 69.0 10.3 120 186-317 568-696 (857)
107 TIGR02237 recomb_radB DNA repa 97.2 0.0013 2.8E-08 57.7 8.0 92 207-302 10-107 (209)
108 PF08423 Rad51: Rad51; InterP 97.2 0.00096 2.1E-08 60.7 7.3 105 197-302 26-143 (256)
109 PRK07261 topology modulation p 97.2 0.00075 1.6E-08 57.5 6.1 35 211-245 2-37 (171)
110 PTZ00454 26S protease regulato 97.2 0.0019 4.2E-08 62.5 9.6 46 186-231 145-201 (398)
111 PRK12608 transcription termina 97.2 0.0011 2.3E-08 63.0 7.6 106 194-302 119-230 (380)
112 cd01393 recA_like RecA is a b 97.2 0.0039 8.4E-08 55.4 11.0 101 200-303 10-125 (226)
113 CHL00095 clpC Clp protease ATP 97.2 0.00097 2.1E-08 70.6 8.2 131 186-328 509-659 (821)
114 PRK08451 DNA polymerase III su 97.2 0.0046 1E-07 61.8 12.5 46 185-231 13-58 (535)
115 PRK07133 DNA polymerase III su 97.2 0.003 6.6E-08 65.0 11.2 45 186-231 18-62 (725)
116 PF13207 AAA_17: AAA domain; P 97.2 0.00027 6E-09 56.2 3.0 21 211-231 1-21 (121)
117 PRK06526 transposase; Provisio 97.2 0.0006 1.3E-08 61.9 5.3 22 210-231 99-120 (254)
118 PRK09183 transposase/IS protei 97.2 0.00094 2E-08 60.9 6.6 22 210-231 103-124 (259)
119 COG0466 Lon ATP-dependent Lon 97.2 0.0014 3.1E-08 66.1 8.3 52 186-239 323-378 (782)
120 COG2909 MalT ATP-dependent tra 97.2 0.0082 1.8E-07 61.9 13.7 131 194-328 23-167 (894)
121 PRK06305 DNA polymerase III su 97.1 0.0025 5.4E-08 62.8 9.7 46 185-231 16-61 (451)
122 TIGR02238 recomb_DMC1 meiotic 97.1 0.0027 5.8E-08 59.5 9.4 105 198-303 85-202 (313)
123 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00042 9E-09 65.5 3.8 47 186-232 51-101 (361)
124 COG0542 clpA ATP-binding subun 97.1 0.0015 3.3E-08 67.3 8.0 131 186-328 491-641 (786)
125 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0051 1.1E-07 56.2 10.8 55 194-257 10-64 (262)
126 PF00308 Bac_DnaA: Bacterial d 97.1 0.00095 2.1E-08 59.3 5.7 121 186-328 8-137 (219)
127 PRK12422 chromosomal replicati 97.1 0.0015 3.3E-08 64.1 7.7 98 209-328 141-242 (445)
128 PF01695 IstB_IS21: IstB-like 97.1 0.00021 4.6E-09 61.3 1.5 74 209-304 47-120 (178)
129 PRK14088 dnaA chromosomal repl 97.1 0.0024 5.3E-08 62.7 9.0 99 209-328 130-234 (440)
130 TIGR00362 DnaA chromosomal rep 97.1 0.002 4.3E-08 62.7 8.3 98 209-328 136-239 (405)
131 PRK06620 hypothetical protein; 97.1 0.0018 4E-08 57.3 7.3 23 210-232 45-67 (214)
132 PRK05541 adenylylsulfate kinas 97.1 0.00091 2E-08 57.1 5.3 36 208-245 6-41 (176)
133 PLN03187 meiotic recombination 97.1 0.003 6.5E-08 59.8 9.2 103 200-303 117-232 (344)
134 TIGR02639 ClpA ATP-dependent C 97.1 0.0015 3.2E-08 68.4 7.8 44 186-231 182-225 (731)
135 TIGR02239 recomb_RAD51 DNA rep 97.0 0.004 8.7E-08 58.4 9.7 107 196-303 83-202 (316)
136 KOG2004 Mitochondrial ATP-depe 97.0 0.015 3.3E-07 58.9 14.0 147 141-303 352-516 (906)
137 PRK08939 primosomal protein Dn 97.0 0.0024 5.2E-08 59.6 8.1 117 190-328 135-258 (306)
138 PRK04301 radA DNA repair and r 97.0 0.0054 1.2E-07 57.6 10.5 106 197-303 90-209 (317)
139 PRK06835 DNA replication prote 97.0 0.0021 4.5E-08 60.6 7.6 99 210-328 184-286 (329)
140 PRK11889 flhF flagellar biosyn 97.0 0.011 2.3E-07 56.8 12.2 24 208-231 240-263 (436)
141 PRK06921 hypothetical protein; 97.0 0.0029 6.2E-08 57.9 8.2 37 209-247 117-154 (266)
142 PF02562 PhoH: PhoH-like prote 97.0 0.0016 3.5E-08 56.9 6.3 53 189-245 3-55 (205)
143 PRK00149 dnaA chromosomal repl 97.0 0.0029 6.3E-08 62.4 8.8 99 208-328 147-251 (450)
144 PRK07667 uridine kinase; Provi 97.0 0.0011 2.4E-08 57.7 5.1 38 194-231 2-39 (193)
145 PRK11034 clpA ATP-dependent Cl 97.0 0.0016 3.5E-08 67.9 7.2 128 186-328 458-605 (758)
146 TIGR00602 rad24 checkpoint pro 97.0 0.0018 3.8E-08 66.0 7.2 46 186-231 84-132 (637)
147 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0017 3.7E-08 68.7 7.4 44 186-231 187-230 (852)
148 PRK06696 uridine kinase; Valid 97.0 0.0009 2E-08 59.6 4.5 41 191-231 3-44 (223)
149 PRK15429 formate hydrogenlyase 97.0 0.0041 8.8E-08 64.7 10.0 47 186-232 376-422 (686)
150 cd01131 PilT Pilus retraction 97.0 0.0018 3.9E-08 56.5 6.3 102 210-328 2-106 (198)
151 PF07728 AAA_5: AAA domain (dy 97.0 0.00077 1.7E-08 55.1 3.7 87 212-315 2-89 (139)
152 PRK14948 DNA polymerase III su 96.9 0.01 2.2E-07 60.7 12.0 137 186-328 16-158 (620)
153 PRK10865 protein disaggregatio 96.9 0.002 4.3E-08 68.4 7.1 44 186-231 178-221 (857)
154 KOG2228 Origin recognition com 96.9 0.0055 1.2E-07 56.8 8.6 160 186-349 24-210 (408)
155 CHL00176 ftsH cell division pr 96.8 0.0049 1.1E-07 63.2 9.0 93 186-302 183-285 (638)
156 PTZ00035 Rad51 protein; Provis 96.8 0.0093 2E-07 56.5 10.3 106 197-303 106-224 (337)
157 PRK06647 DNA polymerase III su 96.8 0.013 2.9E-07 59.2 11.9 45 186-231 16-60 (563)
158 KOG0989 Replication factor C, 96.8 0.0043 9.2E-08 56.8 7.5 126 186-328 36-167 (346)
159 PRK11608 pspF phage shock prot 96.8 0.004 8.6E-08 58.8 7.7 46 186-231 6-51 (326)
160 TIGR03689 pup_AAA proteasome A 96.8 0.003 6.5E-08 62.8 6.9 47 186-232 182-239 (512)
161 cd00983 recA RecA is a bacter 96.8 0.0049 1.1E-07 57.8 7.8 89 207-302 53-143 (325)
162 cd01394 radB RadB. The archaea 96.8 0.007 1.5E-07 53.5 8.6 101 199-303 9-114 (218)
163 PRK15455 PrkA family serine pr 96.8 0.0014 3E-08 65.3 4.3 46 186-231 76-125 (644)
164 PLN03186 DNA repair protein RA 96.8 0.012 2.6E-07 55.8 10.3 107 196-303 110-229 (342)
165 COG1484 DnaC DNA replication p 96.7 0.0035 7.6E-08 56.9 6.5 76 208-304 104-179 (254)
166 PF13671 AAA_33: AAA domain; P 96.7 0.0056 1.2E-07 50.0 7.1 21 211-231 1-21 (143)
167 PRK05563 DNA polymerase III su 96.7 0.023 5.1E-07 57.5 12.9 45 186-231 16-60 (559)
168 TIGR02012 tigrfam_recA protein 96.7 0.0059 1.3E-07 57.2 7.9 90 207-303 53-144 (321)
169 cd01120 RecA-like_NTPases RecA 96.7 0.0093 2E-07 49.3 8.4 40 211-252 1-40 (165)
170 COG2255 RuvB Holliday junction 96.7 0.0014 3E-08 59.4 3.4 46 186-231 26-74 (332)
171 PRK11034 clpA ATP-dependent Cl 96.7 0.0035 7.7E-08 65.4 6.9 44 186-231 186-229 (758)
172 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0035 7.7E-08 66.7 7.0 44 186-231 173-216 (852)
173 PRK09354 recA recombinase A; P 96.7 0.0076 1.6E-07 57.0 8.4 97 200-303 50-149 (349)
174 PRK05022 anaerobic nitric oxid 96.7 0.0063 1.4E-07 61.0 8.3 47 186-232 187-233 (509)
175 COG2607 Predicted ATPase (AAA+ 96.7 0.015 3.2E-07 51.6 9.3 114 186-328 60-180 (287)
176 PRK08058 DNA polymerase III su 96.6 0.019 4.2E-07 54.2 11.0 151 186-348 5-170 (329)
177 PRK09270 nucleoside triphospha 96.6 0.0092 2E-07 53.3 8.4 26 206-231 30-55 (229)
178 PF12061 DUF3542: Protein of u 96.6 0.0075 1.6E-07 55.1 7.6 104 35-157 297-401 (402)
179 PRK14086 dnaA chromosomal repl 96.6 0.0076 1.7E-07 60.9 8.5 98 209-328 314-417 (617)
180 TIGR02236 recomb_radA DNA repa 96.6 0.012 2.7E-07 55.0 9.4 105 198-303 84-203 (310)
181 TIGR01817 nifA Nif-specific re 96.6 0.0059 1.3E-07 61.6 7.6 47 186-232 196-242 (534)
182 COG1875 NYN ribonuclease and A 96.6 0.0063 1.4E-07 57.0 7.0 38 190-229 228-265 (436)
183 COG0572 Udk Uridine kinase [Nu 96.6 0.0055 1.2E-07 53.8 6.3 30 207-238 6-35 (218)
184 COG1618 Predicted nucleotide k 96.6 0.0019 4E-08 53.7 3.0 31 209-241 5-36 (179)
185 cd03247 ABCC_cytochrome_bd The 96.6 0.011 2.4E-07 50.5 8.1 24 209-232 28-51 (178)
186 COG0468 RecA RecA/RadA recombi 96.5 0.018 3.9E-07 52.8 9.7 100 201-303 52-152 (279)
187 TIGR03499 FlhF flagellar biosy 96.5 0.011 2.4E-07 54.5 8.4 85 208-300 193-280 (282)
188 PRK05707 DNA polymerase III su 96.5 0.033 7.2E-07 52.5 11.7 38 291-328 105-143 (328)
189 PF00448 SRP54: SRP54-type pro 96.5 0.0065 1.4E-07 53.0 6.4 23 209-231 1-23 (196)
190 TIGR02974 phageshock_pspF psp 96.5 0.01 2.3E-07 56.0 8.1 45 188-232 1-45 (329)
191 PF00485 PRK: Phosphoribulokin 96.5 0.002 4.3E-08 56.0 3.0 21 211-231 1-21 (194)
192 PRK10867 signal recognition pa 96.5 0.019 4E-07 56.1 9.9 24 208-231 99-122 (433)
193 TIGR00959 ffh signal recogniti 96.5 0.037 8E-07 54.0 12.0 24 208-231 98-121 (428)
194 PTZ00301 uridine kinase; Provi 96.5 0.0029 6.3E-08 55.7 4.0 23 209-231 3-25 (210)
195 PRK08233 hypothetical protein; 96.5 0.0024 5.3E-08 54.5 3.4 24 209-232 3-26 (182)
196 PRK14974 cell division protein 96.5 0.036 7.9E-07 52.3 11.5 24 208-231 139-162 (336)
197 cd03115 SRP The signal recogni 96.5 0.024 5.2E-07 48.1 9.5 21 211-231 2-22 (173)
198 PTZ00361 26 proteosome regulat 96.5 0.0034 7.4E-08 61.3 4.6 52 186-239 183-245 (438)
199 PRK05480 uridine/cytidine kina 96.4 0.0026 5.7E-08 55.9 3.5 25 208-232 5-29 (209)
200 PF13238 AAA_18: AAA domain; P 96.4 0.0023 4.9E-08 51.1 2.7 20 212-231 1-20 (129)
201 cd03238 ABC_UvrA The excision 96.4 0.021 4.5E-07 48.9 8.6 109 209-328 21-146 (176)
202 TIGR00064 ftsY signal recognit 96.4 0.026 5.7E-07 51.8 9.9 25 207-231 70-94 (272)
203 TIGR01241 FtsH_fam ATP-depende 96.4 0.01 2.3E-07 59.3 7.8 47 186-232 55-111 (495)
204 TIGR00235 udk uridine kinase. 96.4 0.0033 7.1E-08 55.3 3.6 25 207-231 4-28 (207)
205 KOG0733 Nuclear AAA ATPase (VC 96.4 0.0076 1.7E-07 59.9 6.4 96 184-303 188-293 (802)
206 PF07693 KAP_NTPase: KAP famil 96.4 0.022 4.8E-07 53.4 9.4 73 193-265 3-81 (325)
207 PRK12724 flagellar biosynthesi 96.4 0.018 4E-07 55.7 8.8 23 209-231 223-245 (432)
208 PRK06547 hypothetical protein; 96.3 0.0056 1.2E-07 52.2 4.8 33 198-232 6-38 (172)
209 cd02025 PanK Pantothenate kina 96.3 0.014 3E-07 51.8 7.5 21 211-231 1-21 (220)
210 PF13604 AAA_30: AAA domain; P 96.3 0.012 2.6E-07 51.3 7.0 115 196-328 7-128 (196)
211 PRK04296 thymidine kinase; Pro 96.3 0.0083 1.8E-07 52.0 5.9 110 210-328 3-113 (190)
212 PRK00771 signal recognition pa 96.3 0.058 1.3E-06 52.8 12.2 37 195-231 75-117 (437)
213 PRK07399 DNA polymerase III su 96.3 0.022 4.7E-07 53.5 9.0 158 186-349 4-184 (314)
214 PRK11388 DNA-binding transcrip 96.3 0.024 5.2E-07 58.6 10.1 47 186-232 325-371 (638)
215 PRK12727 flagellar biosynthesi 96.3 0.22 4.7E-06 49.8 16.1 23 209-231 350-372 (559)
216 PF14532 Sigma54_activ_2: Sigm 96.2 0.0061 1.3E-07 49.8 4.3 44 189-232 1-44 (138)
217 COG0488 Uup ATPase components 96.2 0.22 4.8E-06 50.0 16.0 53 2-55 184-236 (530)
218 cd03214 ABC_Iron-Siderophores_ 96.2 0.026 5.6E-07 48.3 8.3 116 209-328 25-155 (180)
219 PRK08903 DnaA regulatory inact 96.2 0.0074 1.6E-07 53.7 5.1 47 186-232 18-65 (227)
220 PRK06762 hypothetical protein; 96.2 0.0042 9.2E-08 52.3 3.2 23 209-231 2-24 (166)
221 cd02019 NK Nucleoside/nucleoti 96.2 0.0038 8.3E-08 44.6 2.5 22 211-232 1-22 (69)
222 cd03222 ABC_RNaseL_inhibitor T 96.2 0.024 5.2E-07 48.5 7.8 23 209-231 25-47 (177)
223 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.035 7.6E-07 45.7 8.5 24 209-232 26-49 (144)
224 PRK06067 flagellar accessory p 96.1 0.029 6.2E-07 50.2 8.4 100 198-302 14-130 (234)
225 cd01135 V_A-ATPase_B V/A-type 96.1 0.02 4.3E-07 52.3 7.3 95 209-303 69-177 (276)
226 PRK03839 putative kinase; Prov 96.1 0.0042 9.1E-08 53.2 2.9 22 211-232 2-23 (180)
227 COG0593 DnaA ATPase involved i 96.1 0.023 5E-07 54.7 8.0 98 208-328 112-215 (408)
228 TIGR01243 CDC48 AAA family ATP 96.1 0.01 2.2E-07 62.3 6.1 46 186-231 178-234 (733)
229 TIGR02858 spore_III_AA stage I 96.1 0.034 7.3E-07 50.9 8.8 126 194-328 97-226 (270)
230 cd03223 ABCD_peroxisomal_ALDP 96.1 0.046 9.9E-07 46.2 9.0 109 209-328 27-145 (166)
231 COG4618 ArpD ABC-type protease 96.1 0.029 6.2E-07 54.9 8.5 23 209-231 362-384 (580)
232 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0053 1.2E-07 52.6 3.3 24 208-231 2-25 (188)
233 PRK14722 flhF flagellar biosyn 96.0 0.055 1.2E-06 51.8 10.3 23 209-231 137-159 (374)
234 cd03216 ABC_Carb_Monos_I This 96.0 0.02 4.2E-07 48.3 6.6 109 209-328 26-139 (163)
235 PRK05703 flhF flagellar biosyn 96.0 0.083 1.8E-06 51.7 11.7 23 209-231 221-243 (424)
236 PRK08927 fliI flagellum-specif 96.0 0.021 4.6E-07 55.6 7.5 92 208-303 157-259 (442)
237 PRK08972 fliI flagellum-specif 96.0 0.023 5.1E-07 55.2 7.7 91 209-303 162-263 (444)
238 PF00154 RecA: recA bacterial 96.0 0.033 7.1E-07 52.1 8.4 89 208-303 52-142 (322)
239 PRK12723 flagellar biosynthesi 96.0 0.12 2.7E-06 49.7 12.5 24 208-231 173-196 (388)
240 PRK14738 gmk guanylate kinase; 96.0 0.0065 1.4E-07 53.4 3.5 31 201-231 5-35 (206)
241 COG0563 Adk Adenylate kinase a 95.9 0.02 4.3E-07 49.1 6.2 22 211-232 2-23 (178)
242 PRK10820 DNA-binding transcrip 95.9 0.027 5.8E-07 56.7 8.0 46 186-231 204-249 (520)
243 COG4608 AppF ABC-type oligopep 95.9 0.056 1.2E-06 48.9 9.2 126 208-336 38-178 (268)
244 cd03228 ABCC_MRP_Like The MRP 95.9 0.053 1.1E-06 46.0 8.8 23 209-231 28-50 (171)
245 cd02023 UMPK Uridine monophosp 95.9 0.005 1.1E-07 53.6 2.5 21 211-231 1-21 (198)
246 TIGR00554 panK_bact pantothena 95.9 0.041 8.9E-07 50.9 8.5 25 207-231 60-84 (290)
247 COG1102 Cmk Cytidylate kinase 95.9 0.01 2.2E-07 49.4 4.1 45 211-268 2-46 (179)
248 PRK04040 adenylate kinase; Pro 95.9 0.0069 1.5E-07 52.4 3.2 23 209-231 2-24 (188)
249 cd01132 F1_ATPase_alpha F1 ATP 95.9 0.028 6.1E-07 51.3 7.2 98 209-312 69-181 (274)
250 PRK14527 adenylate kinase; Pro 95.9 0.02 4.2E-07 49.6 6.0 24 208-231 5-28 (191)
251 PRK09519 recA DNA recombinatio 95.8 0.035 7.5E-07 57.9 8.6 99 197-302 47-148 (790)
252 PRK12597 F0F1 ATP synthase sub 95.8 0.021 4.6E-07 56.0 6.7 94 209-303 143-248 (461)
253 PRK08149 ATP synthase SpaL; Va 95.8 0.032 6.9E-07 54.3 7.7 91 209-303 151-252 (428)
254 TIGR00150 HI0065_YjeE ATPase, 95.8 0.012 2.6E-07 47.8 4.1 40 194-233 7-46 (133)
255 TIGR02322 phosphon_PhnN phosph 95.8 0.0074 1.6E-07 51.5 3.0 23 210-232 2-24 (179)
256 COG1419 FlhF Flagellar GTP-bin 95.8 0.069 1.5E-06 51.1 9.7 37 195-231 187-226 (407)
257 PRK00625 shikimate kinase; Pro 95.8 0.0067 1.4E-07 51.8 2.7 21 211-231 2-22 (173)
258 PRK06002 fliI flagellum-specif 95.8 0.051 1.1E-06 53.1 8.9 92 209-303 165-265 (450)
259 PRK13531 regulatory ATPase Rav 95.8 0.021 4.5E-07 56.2 6.3 41 187-231 21-61 (498)
260 KOG1514 Origin recognition com 95.8 0.11 2.4E-06 52.7 11.4 135 186-328 396-546 (767)
261 PRK00131 aroK shikimate kinase 95.8 0.008 1.7E-07 50.7 3.1 23 209-231 4-26 (175)
262 PLN00020 ribulose bisphosphate 95.8 0.021 4.5E-07 54.2 6.0 31 207-239 146-176 (413)
263 PRK00279 adk adenylate kinase; 95.7 0.024 5.3E-07 50.0 6.2 21 211-231 2-22 (215)
264 PRK06936 type III secretion sy 95.7 0.044 9.5E-07 53.4 8.3 92 208-303 161-263 (439)
265 TIGR01243 CDC48 AAA family ATP 95.7 0.032 6.9E-07 58.6 8.0 52 186-239 453-515 (733)
266 PHA00729 NTP-binding motif con 95.7 0.015 3.2E-07 51.6 4.7 33 197-231 7-39 (226)
267 KOG0734 AAA+-type ATPase conta 95.7 0.053 1.2E-06 53.4 8.7 50 186-235 304-363 (752)
268 PRK09280 F0F1 ATP synthase sub 95.7 0.043 9.4E-07 53.8 8.2 94 209-303 144-249 (463)
269 PRK12726 flagellar biosynthesi 95.7 0.19 4.1E-06 48.1 12.2 24 208-231 205-228 (407)
270 cd03246 ABCC_Protease_Secretio 95.7 0.043 9.3E-07 46.6 7.3 23 209-231 28-50 (173)
271 cd02027 APSK Adenosine 5'-phos 95.7 0.059 1.3E-06 44.7 8.0 21 211-231 1-21 (149)
272 cd02024 NRK1 Nicotinamide ribo 95.7 0.0072 1.6E-07 52.2 2.4 22 211-232 1-22 (187)
273 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.087 1.9E-06 47.3 9.6 124 198-328 10-168 (237)
274 COG3903 Predicted ATPase [Gene 95.7 0.0063 1.4E-07 57.9 2.2 111 208-328 13-124 (414)
275 TIGR01420 pilT_fam pilus retra 95.7 0.024 5.2E-07 53.9 6.2 106 209-328 122-227 (343)
276 PRK06217 hypothetical protein; 95.6 0.0097 2.1E-07 51.2 3.2 23 210-232 2-24 (183)
277 PRK10751 molybdopterin-guanine 95.6 0.011 2.3E-07 50.4 3.3 24 208-231 5-28 (173)
278 cd01121 Sms Sms (bacterial rad 95.6 0.076 1.7E-06 51.0 9.6 99 196-302 69-168 (372)
279 PRK05439 pantothenate kinase; 95.6 0.074 1.6E-06 49.6 9.2 26 206-231 83-108 (311)
280 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.053 1.1E-06 45.5 7.4 112 210-328 3-135 (159)
281 PTZ00088 adenylate kinase 1; P 95.6 0.015 3.3E-07 51.9 4.4 21 211-231 8-28 (229)
282 TIGR03263 guanyl_kin guanylate 95.6 0.0096 2.1E-07 50.8 3.0 22 210-231 2-23 (180)
283 TIGR03305 alt_F1F0_F1_bet alte 95.6 0.019 4.1E-07 56.1 5.3 94 209-303 138-243 (449)
284 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.0079 1.7E-07 51.5 2.4 21 211-231 1-21 (183)
285 PF08477 Miro: Miro-like prote 95.6 0.011 2.3E-07 46.6 3.0 23 212-234 2-24 (119)
286 cd02020 CMPK Cytidine monophos 95.6 0.0085 1.8E-07 49.0 2.5 21 211-231 1-21 (147)
287 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.056 1.2E-06 47.1 7.8 24 209-232 26-49 (200)
288 cd02028 UMPK_like Uridine mono 95.6 0.0086 1.9E-07 51.4 2.5 21 211-231 1-21 (179)
289 PRK00889 adenylylsulfate kinas 95.6 0.012 2.7E-07 50.0 3.5 23 209-231 4-26 (175)
290 KOG0741 AAA+-type ATPase [Post 95.6 0.091 2E-06 51.7 9.6 42 197-242 525-567 (744)
291 KOG0991 Replication factor C, 95.6 0.037 8.1E-07 48.9 6.4 44 186-231 27-70 (333)
292 cd01122 GP4d_helicase GP4d_hel 95.5 0.15 3.3E-06 46.5 10.9 53 209-264 30-82 (271)
293 KOG0924 mRNA splicing factor A 95.5 0.12 2.7E-06 52.2 10.7 141 192-342 358-527 (1042)
294 PF03205 MobB: Molybdopterin g 95.5 0.011 2.4E-07 48.6 3.0 38 210-249 1-39 (140)
295 KOG1969 DNA replication checkp 95.5 0.058 1.3E-06 55.0 8.5 50 207-261 324-373 (877)
296 PRK09099 type III secretion sy 95.5 0.053 1.1E-06 53.0 8.1 93 208-303 162-264 (441)
297 PF00006 ATP-synt_ab: ATP synt 95.5 0.036 7.8E-07 49.0 6.4 88 210-303 16-116 (215)
298 PRK13947 shikimate kinase; Pro 95.5 0.01 2.2E-07 50.2 2.8 21 211-231 3-23 (171)
299 PF12775 AAA_7: P-loop contain 95.5 0.025 5.5E-07 51.9 5.6 33 196-231 23-55 (272)
300 PLN02318 phosphoribulokinase/u 95.5 0.018 3.8E-07 57.9 4.8 35 197-231 53-87 (656)
301 PF00625 Guanylate_kin: Guanyl 95.5 0.017 3.6E-07 49.7 4.1 36 209-246 2-37 (183)
302 PF00158 Sigma54_activat: Sigm 95.5 0.053 1.1E-06 46.0 7.1 45 188-232 1-45 (168)
303 TIGR00390 hslU ATP-dependent p 95.5 0.039 8.4E-07 53.4 6.8 52 186-239 12-75 (441)
304 COG0467 RAD55 RecA-superfamily 95.5 0.039 8.4E-07 50.2 6.6 91 207-302 21-134 (260)
305 PRK08769 DNA polymerase III su 95.5 0.16 3.6E-06 47.6 10.9 56 291-347 112-172 (319)
306 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.041 9E-07 45.8 6.3 108 209-328 25-137 (157)
307 PRK10463 hydrogenase nickel in 95.4 0.053 1.1E-06 50.0 7.3 91 207-303 102-195 (290)
308 PRK13949 shikimate kinase; Pro 95.4 0.012 2.7E-07 49.9 3.0 22 210-231 2-23 (169)
309 KOG1532 GTPase XAB1, interacts 95.4 0.01 2.2E-07 53.5 2.5 26 207-232 17-42 (366)
310 PRK03846 adenylylsulfate kinas 95.4 0.014 3.1E-07 50.8 3.5 25 207-231 22-46 (198)
311 PRK14528 adenylate kinase; Pro 95.4 0.041 8.9E-07 47.5 6.3 22 210-231 2-23 (186)
312 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.19 4.2E-06 45.3 10.6 117 210-328 31-196 (254)
313 COG0542 clpA ATP-binding subun 95.4 0.018 4E-07 59.5 4.6 44 186-231 170-213 (786)
314 TIGR01425 SRP54_euk signal rec 95.4 0.26 5.7E-06 48.0 12.3 24 208-231 99-122 (429)
315 COG1124 DppF ABC-type dipeptid 95.4 0.021 4.6E-07 50.7 4.3 23 209-231 33-55 (252)
316 cd00071 GMPK Guanosine monopho 95.4 0.014 3E-07 47.8 3.0 21 211-231 1-21 (137)
317 cd00227 CPT Chloramphenicol (C 95.4 0.013 2.7E-07 50.0 2.9 22 210-231 3-24 (175)
318 PRK00300 gmk guanylate kinase; 95.4 0.013 2.7E-07 51.2 2.9 24 209-232 5-28 (205)
319 COG1428 Deoxynucleoside kinase 95.4 0.013 2.8E-07 51.0 2.9 24 209-232 4-27 (216)
320 cd02021 GntK Gluconate kinase 95.3 0.011 2.5E-07 48.7 2.5 22 211-232 1-22 (150)
321 PRK10078 ribose 1,5-bisphospho 95.3 0.014 3.1E-07 50.3 3.1 23 210-232 3-25 (186)
322 cd01129 PulE-GspE PulE/GspE Th 95.3 0.13 2.8E-06 47.0 9.4 119 189-328 62-180 (264)
323 COG4088 Predicted nucleotide k 95.3 0.11 2.4E-06 45.2 8.3 22 210-231 2-23 (261)
324 TIGR00176 mobB molybdopterin-g 95.3 0.014 3.1E-07 48.8 2.9 35 211-247 1-36 (155)
325 PRK05342 clpX ATP-dependent pr 95.3 0.043 9.3E-07 53.4 6.6 46 186-231 71-130 (412)
326 PRK10923 glnG nitrogen regulat 95.3 0.057 1.2E-06 53.5 7.6 47 186-232 138-184 (469)
327 COG0194 Gmk Guanylate kinase [ 95.3 0.021 4.5E-07 48.8 3.8 25 209-233 4-28 (191)
328 PRK07594 type III secretion sy 95.3 0.062 1.3E-06 52.4 7.5 91 209-303 155-256 (433)
329 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.099 2.1E-06 47.6 8.5 93 207-302 34-141 (259)
330 COG1222 RPT1 ATP-dependent 26S 95.2 0.05 1.1E-06 51.1 6.4 52 186-239 151-213 (406)
331 PTZ00185 ATPase alpha subunit; 95.2 0.14 3.1E-06 50.7 9.9 91 210-303 190-300 (574)
332 TIGR03498 FliI_clade3 flagella 95.2 0.089 1.9E-06 51.2 8.5 91 209-303 140-241 (418)
333 CHL00081 chlI Mg-protoporyphyr 95.2 0.017 3.8E-07 54.7 3.6 48 182-231 13-60 (350)
334 cd00464 SK Shikimate kinase (S 95.2 0.014 3.1E-07 48.1 2.7 20 212-231 2-21 (154)
335 PRK06731 flhF flagellar biosyn 95.2 0.26 5.7E-06 45.1 11.1 23 209-231 75-97 (270)
336 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.2 4.3E-06 44.5 10.2 122 200-328 11-163 (229)
337 PF03193 DUF258: Protein of un 95.2 0.036 7.7E-07 46.6 5.0 37 192-233 23-59 (161)
338 PRK14530 adenylate kinase; Pro 95.2 0.015 3.2E-07 51.4 2.9 21 211-231 5-25 (215)
339 TIGR02868 CydC thiol reductant 95.2 0.14 3.1E-06 51.5 10.2 24 208-231 360-383 (529)
340 PRK14721 flhF flagellar biosyn 95.2 0.12 2.7E-06 50.2 9.3 23 209-231 191-213 (420)
341 PRK13975 thymidylate kinase; P 95.2 0.017 3.7E-07 50.0 3.1 22 210-231 3-24 (196)
342 COG1131 CcmA ABC-type multidru 95.1 0.29 6.2E-06 45.5 11.4 23 209-231 31-53 (293)
343 KOG0735 AAA+-type ATPase [Post 95.1 0.068 1.5E-06 54.4 7.5 72 209-302 431-504 (952)
344 cd01672 TMPK Thymidine monopho 95.1 0.038 8.2E-07 47.6 5.3 22 210-231 1-22 (200)
345 PRK14723 flhF flagellar biosyn 95.1 0.13 2.7E-06 53.7 9.7 23 209-231 185-207 (767)
346 cd01136 ATPase_flagellum-secre 95.1 0.088 1.9E-06 49.5 7.9 91 209-303 69-170 (326)
347 PF01583 APS_kinase: Adenylyls 95.1 0.021 4.5E-07 47.7 3.3 35 209-245 2-36 (156)
348 PRK06090 DNA polymerase III su 95.1 0.35 7.6E-06 45.4 11.9 57 291-348 107-168 (319)
349 TIGR02655 circ_KaiC circadian 95.1 0.12 2.6E-06 51.6 9.2 104 195-303 249-364 (484)
350 PRK05688 fliI flagellum-specif 95.1 0.078 1.7E-06 51.9 7.7 91 209-303 168-269 (451)
351 PRK05057 aroK shikimate kinase 95.1 0.019 4.1E-07 48.9 3.1 23 209-231 4-26 (172)
352 TIGR00073 hypB hydrogenase acc 95.1 0.02 4.3E-07 50.3 3.3 26 207-232 20-45 (207)
353 KOG0927 Predicted transporter 95.1 1.5 3.3E-05 43.6 16.2 46 186-232 394-439 (614)
354 PRK05922 type III secretion sy 95.1 0.084 1.8E-06 51.5 7.8 91 209-303 157-258 (434)
355 COG3640 CooC CO dehydrogenase 95.0 0.028 6.2E-07 49.7 4.1 21 211-231 2-22 (255)
356 TIGR01040 V-ATPase_V1_B V-type 95.0 0.064 1.4E-06 52.4 6.9 95 209-303 141-258 (466)
357 PF00910 RNA_helicase: RNA hel 95.0 0.014 3.1E-07 45.5 2.0 20 212-231 1-20 (107)
358 PRK06871 DNA polymerase III su 95.0 0.34 7.3E-06 45.6 11.5 57 291-348 106-167 (325)
359 PF07726 AAA_3: ATPase family 95.0 0.024 5.2E-07 45.6 3.3 28 212-241 2-29 (131)
360 TIGR01313 therm_gnt_kin carboh 95.0 0.015 3.3E-07 48.8 2.3 20 212-231 1-20 (163)
361 TIGR01041 ATP_syn_B_arch ATP s 95.0 0.065 1.4E-06 52.7 6.8 95 209-303 141-249 (458)
362 TIGR02030 BchI-ChlI magnesium 95.0 0.028 6E-07 53.2 4.2 46 184-231 2-47 (337)
363 PRK06964 DNA polymerase III su 94.9 0.45 9.7E-06 45.2 12.2 57 291-348 131-192 (342)
364 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.026 5.7E-07 49.8 3.7 23 209-231 29-51 (213)
365 KOG1051 Chaperone HSP104 and r 94.9 0.26 5.5E-06 52.1 11.3 116 186-316 562-685 (898)
366 PRK14737 gmk guanylate kinase; 94.9 0.032 6.8E-07 48.2 4.1 24 208-231 3-26 (186)
367 PRK13948 shikimate kinase; Pro 94.9 0.023 5.1E-07 48.8 3.2 24 208-231 9-32 (182)
368 TIGR01818 ntrC nitrogen regula 94.9 0.091 2E-06 51.9 7.8 47 186-232 134-180 (463)
369 PRK09435 membrane ATPase/prote 94.9 0.04 8.6E-07 52.0 4.9 37 195-231 42-78 (332)
370 TIGR02788 VirB11 P-type DNA tr 94.9 0.061 1.3E-06 50.3 6.2 96 209-314 144-239 (308)
371 TIGR03496 FliI_clade1 flagella 94.9 0.072 1.6E-06 51.8 6.8 91 209-303 137-238 (411)
372 PRK06995 flhF flagellar biosyn 94.9 0.11 2.3E-06 51.5 8.1 23 209-231 256-278 (484)
373 TIGR01039 atpD ATP synthase, F 94.9 0.094 2E-06 51.4 7.5 94 209-303 143-248 (461)
374 PRK05201 hslU ATP-dependent pr 94.9 0.061 1.3E-06 52.0 6.2 46 186-231 15-72 (443)
375 KOG3347 Predicted nucleotide k 94.8 0.038 8.2E-07 45.5 4.0 70 209-292 7-76 (176)
376 PRK04182 cytidylate kinase; Pr 94.8 0.023 4.9E-07 48.3 3.0 21 211-231 2-22 (180)
377 TIGR03497 FliI_clade2 flagella 94.8 0.075 1.6E-06 51.7 6.8 92 208-303 136-238 (413)
378 PRK13946 shikimate kinase; Pro 94.8 0.023 5E-07 48.9 3.0 23 209-231 10-32 (184)
379 cd01134 V_A-ATPase_A V/A-type 94.8 0.12 2.6E-06 48.9 7.8 60 197-261 146-206 (369)
380 PRK15064 ABC transporter ATP-b 94.8 0.37 8.1E-06 48.6 12.2 24 209-232 27-50 (530)
381 PRK12339 2-phosphoglycerate ki 94.8 0.026 5.7E-07 49.2 3.4 24 209-232 3-26 (197)
382 cd00820 PEPCK_HprK Phosphoenol 94.8 0.027 5.8E-07 43.9 3.0 22 209-230 15-36 (107)
383 PRK04328 hypothetical protein; 94.8 0.11 2.5E-06 46.9 7.6 124 198-328 12-170 (249)
384 CHL00059 atpA ATP synthase CF1 94.8 0.11 2.4E-06 51.1 7.9 97 209-311 141-252 (485)
385 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.032 6.9E-07 52.5 4.0 46 186-231 61-110 (358)
386 cd04139 RalA_RalB RalA/RalB su 94.8 0.028 6E-07 46.5 3.4 23 211-233 2-24 (164)
387 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.035 7.6E-07 48.7 4.1 23 209-231 29-51 (204)
388 TIGR02782 TrbB_P P-type conjug 94.8 0.1 2.3E-06 48.6 7.4 102 210-328 133-235 (299)
389 PRK08472 fliI flagellum-specif 94.8 0.11 2.4E-06 50.7 7.8 86 209-303 157-257 (434)
390 PLN02348 phosphoribulokinase 94.8 0.042 9.2E-07 52.6 4.8 26 206-231 46-71 (395)
391 PRK14493 putative bifunctional 94.8 0.025 5.4E-07 52.0 3.2 22 210-231 2-23 (274)
392 PF00005 ABC_tran: ABC transpo 94.8 0.025 5.3E-07 45.8 2.9 22 210-231 12-33 (137)
393 COG1936 Predicted nucleotide k 94.8 0.023 4.9E-07 47.9 2.6 20 211-230 2-21 (180)
394 COG2842 Uncharacterized ATPase 94.8 0.22 4.8E-06 45.6 9.2 118 186-316 72-190 (297)
395 PRK07196 fliI flagellum-specif 94.8 0.11 2.3E-06 50.8 7.6 92 208-303 154-256 (434)
396 KOG0744 AAA+-type ATPase [Post 94.7 0.096 2.1E-06 48.6 6.8 82 208-303 176-261 (423)
397 TIGR00764 lon_rel lon-related 94.7 0.076 1.6E-06 54.4 6.9 73 186-265 18-91 (608)
398 PRK13230 nitrogenase reductase 94.7 0.024 5.3E-07 52.1 3.1 22 210-231 2-23 (279)
399 PF03308 ArgK: ArgK protein; 94.7 0.044 9.6E-07 49.4 4.6 38 194-231 14-51 (266)
400 CHL00195 ycf46 Ycf46; Provisio 94.7 0.053 1.2E-06 53.9 5.6 46 186-231 228-281 (489)
401 COG2019 AdkA Archaeal adenylat 94.7 0.03 6.6E-07 46.9 3.2 23 209-231 4-26 (189)
402 TIGR01287 nifH nitrogenase iro 94.7 0.022 4.9E-07 52.2 2.8 22 210-231 1-22 (275)
403 PRK07721 fliI flagellum-specif 94.7 0.12 2.6E-06 50.7 7.9 25 208-232 157-181 (438)
404 COG1100 GTPase SAR1 and relate 94.7 0.023 5.1E-07 49.8 2.8 24 210-233 6-29 (219)
405 TIGR00750 lao LAO/AO transport 94.7 0.039 8.4E-07 51.4 4.4 37 195-231 20-56 (300)
406 COG2884 FtsE Predicted ATPase 94.7 0.4 8.6E-06 41.3 9.8 50 279-328 142-194 (223)
407 cd03116 MobB Molybdenum is an 94.7 0.03 6.6E-07 47.0 3.2 22 210-231 2-23 (159)
408 PRK15115 response regulator Gl 94.6 0.12 2.6E-06 50.7 8.0 46 187-232 135-180 (444)
409 cd01125 repA Hexameric Replica 94.6 0.2 4.3E-06 45.0 8.6 21 211-231 3-23 (239)
410 PRK11823 DNA repair protein Ra 94.6 0.2 4.2E-06 49.5 9.2 99 196-302 67-166 (446)
411 TIGR02546 III_secr_ATP type II 94.6 0.31 6.6E-06 47.7 10.4 91 209-303 145-246 (422)
412 COG1116 TauB ABC-type nitrate/ 94.6 0.029 6.3E-07 50.1 3.0 23 209-231 29-51 (248)
413 PF11868 DUF3388: Protein of u 94.6 0.16 3.4E-06 42.2 7.0 89 193-315 36-132 (192)
414 PLN02200 adenylate kinase fami 94.6 0.032 7E-07 50.0 3.4 24 208-231 42-65 (234)
415 PRK12678 transcription termina 94.6 0.058 1.3E-06 54.0 5.3 101 197-303 405-514 (672)
416 PRK07960 fliI flagellum-specif 94.6 0.11 2.3E-06 50.9 7.1 25 208-232 174-198 (455)
417 PRK08356 hypothetical protein; 94.5 0.031 6.8E-07 48.5 3.1 22 209-230 5-26 (195)
418 PRK10416 signal recognition pa 94.5 0.18 3.8E-06 47.4 8.4 24 208-231 113-136 (318)
419 COG1703 ArgK Putative periplas 94.5 0.039 8.4E-07 50.6 3.8 65 195-259 37-101 (323)
420 PF01926 MMR_HSR1: 50S ribosom 94.5 0.032 6.9E-07 43.8 2.9 21 212-232 2-22 (116)
421 PF13521 AAA_28: AAA domain; P 94.5 0.026 5.6E-07 47.4 2.5 21 212-232 2-22 (163)
422 cd02040 NifH NifH gene encodes 94.5 0.029 6.3E-07 51.1 3.0 22 210-231 2-23 (270)
423 TIGR00416 sms DNA repair prote 94.5 0.3 6.5E-06 48.3 10.2 102 194-303 79-181 (454)
424 TIGR02173 cyt_kin_arch cytidyl 94.5 0.031 6.8E-07 47.0 3.0 21 211-231 2-22 (171)
425 cd04119 RJL RJL (RabJ-Like) su 94.5 0.033 7.1E-07 46.3 3.0 22 212-233 3-24 (168)
426 PF06745 KaiC: KaiC; InterPro 94.5 0.039 8.5E-07 49.0 3.7 90 208-301 18-124 (226)
427 COG0237 CoaE Dephospho-CoA kin 94.5 0.033 7.1E-07 48.7 3.1 23 209-231 2-24 (201)
428 cd04163 Era Era subfamily. Er 94.5 0.039 8.4E-07 45.4 3.5 24 209-232 3-26 (168)
429 PRK09825 idnK D-gluconate kina 94.5 0.033 7.1E-07 47.7 3.0 22 210-231 4-25 (176)
430 PRK11174 cysteine/glutathione 94.4 0.42 9.1E-06 48.8 11.6 24 208-231 375-398 (588)
431 COG1763 MobB Molybdopterin-gua 94.4 0.03 6.4E-07 47.1 2.6 23 209-231 2-24 (161)
432 TIGR01026 fliI_yscN ATPase Fli 94.4 0.11 2.4E-06 51.0 6.9 24 209-232 163-186 (440)
433 smart00173 RAS Ras subfamily o 94.4 0.033 7.2E-07 46.3 3.0 22 211-232 2-23 (164)
434 COG1643 HrpA HrpA-like helicas 94.4 0.29 6.3E-06 51.6 10.4 138 191-336 51-216 (845)
435 cd01862 Rab7 Rab7 subfamily. 94.4 0.033 7.2E-07 46.6 2.9 22 211-232 2-23 (172)
436 COG0003 ArsA Predicted ATPase 94.4 0.056 1.2E-06 50.7 4.7 22 209-230 2-23 (322)
437 PRK03731 aroL shikimate kinase 94.4 0.032 6.8E-07 47.2 2.8 22 210-231 3-24 (171)
438 PRK13232 nifH nitrogenase redu 94.4 0.031 6.8E-07 51.2 3.0 22 210-231 2-23 (273)
439 COG1126 GlnQ ABC-type polar am 94.4 0.034 7.3E-07 48.7 2.9 23 209-231 28-50 (240)
440 PF03266 NTPase_1: NTPase; In 94.4 0.031 6.6E-07 47.5 2.7 21 212-232 2-22 (168)
441 PRK06793 fliI flagellum-specif 94.4 0.22 4.8E-06 48.6 8.9 91 209-303 156-257 (432)
442 PF03029 ATP_bind_1: Conserved 94.4 0.023 5E-07 51.1 2.0 19 214-232 1-19 (238)
443 PF06309 Torsin: Torsin; Inte 94.4 0.049 1.1E-06 43.6 3.7 47 186-232 25-76 (127)
444 PRK14526 adenylate kinase; Pro 94.4 0.14 3E-06 45.2 6.9 20 212-231 3-22 (211)
445 TIGR00455 apsK adenylylsulfate 94.4 0.21 4.6E-06 42.7 8.0 24 208-231 17-40 (184)
446 cd02117 NifH_like This family 94.4 0.032 7E-07 49.1 2.9 22 210-231 1-22 (212)
447 PRK06820 type III secretion sy 94.4 0.12 2.6E-06 50.5 7.0 38 209-250 163-200 (440)
448 PLN02796 D-glycerate 3-kinase 94.4 0.039 8.4E-07 52.1 3.5 24 208-231 99-122 (347)
449 PRK05800 cobU adenosylcobinami 94.4 0.16 3.4E-06 43.2 7.0 84 210-301 2-85 (170)
450 TIGR00041 DTMP_kinase thymidyl 94.4 0.086 1.9E-06 45.5 5.5 23 210-232 4-26 (195)
451 PRK06761 hypothetical protein; 94.4 0.074 1.6E-06 48.9 5.2 23 210-232 4-26 (282)
452 PRK13236 nitrogenase reductase 94.3 0.04 8.7E-07 51.3 3.6 25 207-231 4-28 (296)
453 COG1066 Sms Predicted ATP-depe 94.3 0.29 6.2E-06 47.0 9.2 102 193-303 77-179 (456)
454 cd00544 CobU Adenosylcobinamid 94.3 0.12 2.6E-06 43.9 6.1 81 212-301 2-82 (169)
455 TIGR03574 selen_PSTK L-seryl-t 94.3 0.028 6E-07 50.8 2.4 20 212-231 2-21 (249)
456 TIGR00231 small_GTP small GTP- 94.3 0.038 8.3E-07 44.8 3.0 23 211-233 3-25 (161)
457 PF13481 AAA_25: AAA domain; P 94.3 0.043 9.3E-07 47.2 3.4 92 210-303 33-152 (193)
458 PRK08699 DNA polymerase III su 94.3 0.27 5.9E-06 46.3 9.1 23 209-231 21-43 (325)
459 cd00879 Sar1 Sar1 subfamily. 94.3 0.073 1.6E-06 45.6 4.9 24 209-232 19-42 (190)
460 PRK14532 adenylate kinase; Pro 94.3 0.034 7.3E-07 47.8 2.8 20 212-231 3-22 (188)
461 cd01428 ADK Adenylate kinase ( 94.3 0.034 7.3E-07 47.9 2.7 21 212-232 2-22 (194)
462 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.3 0.037 8E-07 48.8 3.0 24 209-232 30-53 (218)
463 cd04138 H_N_K_Ras_like H-Ras/N 94.2 0.039 8.4E-07 45.5 3.0 21 212-232 4-24 (162)
464 TIGR02902 spore_lonB ATP-depen 94.2 0.04 8.7E-07 55.5 3.5 45 185-231 64-108 (531)
465 cd03225 ABC_cobalt_CbiO_domain 94.2 0.039 8.5E-07 48.4 3.1 24 209-232 27-50 (211)
466 cd04159 Arl10_like Arl10-like 94.2 0.047 1E-06 44.6 3.4 21 212-232 2-22 (159)
467 cd04113 Rab4 Rab4 subfamily. 94.2 0.041 8.9E-07 45.6 3.0 22 212-233 3-24 (161)
468 PRK01184 hypothetical protein; 94.2 0.04 8.7E-07 47.2 3.0 19 210-228 2-20 (184)
469 cd04155 Arl3 Arl3 subfamily. 94.2 0.037 8E-07 46.5 2.8 24 209-232 14-37 (173)
470 smart00534 MUTSac ATPase domai 94.2 0.025 5.5E-07 48.7 1.8 21 211-231 1-21 (185)
471 TIGR00960 3a0501s02 Type II (G 94.2 0.039 8.6E-07 48.6 3.0 24 209-232 29-52 (216)
472 PRK13695 putative NTPase; Prov 94.2 0.041 8.8E-07 46.8 3.0 22 211-232 2-23 (174)
473 cd01130 VirB11-like_ATPase Typ 94.2 0.04 8.6E-07 47.5 2.9 109 194-314 13-121 (186)
474 COG1120 FepC ABC-type cobalami 94.1 0.04 8.8E-07 49.8 3.0 24 208-231 27-50 (258)
475 PF10662 PduV-EutP: Ethanolami 94.1 0.045 9.8E-07 45.0 3.0 24 210-233 2-25 (143)
476 COG0464 SpoVK ATPases of the A 94.1 0.076 1.7E-06 53.1 5.3 94 186-303 242-346 (494)
477 COG0703 AroK Shikimate kinase 94.1 0.039 8.5E-07 46.7 2.7 22 210-231 3-24 (172)
478 PRK08099 bifunctional DNA-bind 94.1 0.038 8.2E-07 53.6 3.0 26 207-232 217-242 (399)
479 TIGR01166 cbiO cobalt transpor 94.1 0.042 9.2E-07 47.3 3.0 23 209-231 18-40 (190)
480 PRK14490 putative bifunctional 94.1 0.06 1.3E-06 51.7 4.3 30 208-239 4-33 (369)
481 cd01983 Fer4_NifH The Fer4_Nif 94.1 0.041 8.8E-07 41.0 2.6 21 211-231 1-21 (99)
482 smart00175 RAB Rab subfamily o 94.1 0.045 9.7E-07 45.3 3.1 21 212-232 3-23 (164)
483 TIGR02524 dot_icm_DotB Dot/Icm 94.1 0.12 2.5E-06 49.5 6.1 113 197-328 125-243 (358)
484 cd00876 Ras Ras family. The R 94.1 0.052 1.1E-06 44.6 3.4 21 212-232 2-22 (160)
485 cd03229 ABC_Class3 This class 94.1 0.045 9.8E-07 46.7 3.1 23 209-231 26-48 (178)
486 PRK13765 ATP-dependent proteas 94.1 0.1 2.2E-06 53.6 6.0 74 186-266 31-105 (637)
487 cd03297 ABC_ModC_molybdenum_tr 94.1 0.048 1E-06 48.0 3.3 25 207-232 22-46 (214)
488 PRK13235 nifH nitrogenase redu 94.0 0.042 9.1E-07 50.4 3.0 22 210-231 2-23 (274)
489 KOG2170 ATPase of the AAA+ sup 94.0 0.078 1.7E-06 48.6 4.6 108 186-316 82-203 (344)
490 cd04124 RabL2 RabL2 subfamily. 94.0 0.046 9.9E-07 45.6 3.0 21 212-232 3-23 (161)
491 cd02029 PRK_like Phosphoribulo 94.0 0.18 3.9E-06 45.9 6.9 21 211-231 1-21 (277)
492 cd02022 DPCK Dephospho-coenzym 94.0 0.038 8.1E-07 47.3 2.5 21 211-231 1-21 (179)
493 PRK14529 adenylate kinase; Pro 94.0 0.16 3.5E-06 45.1 6.5 83 212-304 3-88 (223)
494 PRK13233 nifH nitrogenase redu 94.0 0.044 9.6E-07 50.2 3.1 22 210-231 3-24 (275)
495 COG0541 Ffh Signal recognition 94.0 0.54 1.2E-05 45.4 10.4 71 195-268 79-158 (451)
496 cd03261 ABC_Org_Solvent_Resist 94.0 0.045 9.7E-07 48.9 3.0 24 209-232 26-49 (235)
497 COG1136 SalX ABC-type antimicr 94.0 0.047 1E-06 48.4 3.1 23 209-231 31-53 (226)
498 TIGR02915 PEP_resp_reg putativ 94.0 0.17 3.6E-06 49.8 7.3 46 186-232 139-185 (445)
499 TIGR02528 EutP ethanolamine ut 94.0 0.046 9.9E-07 44.4 2.8 22 211-232 2-23 (142)
500 smart00487 DEXDc DEAD-like hel 94.0 0.28 6.1E-06 41.4 7.9 34 195-231 13-47 (201)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-35 Score=302.22 Aligned_cols=276 Identities=22% Similarity=0.285 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcCChHHHHHHHHHHHHHHHhHHHHHHHhHHhhhcccccC-Cc-c--
Q 018692 58 MARHLIQLIRQEFDESKMSLPFLQLLDLEESDEEDVKRPEILEILEDINDFVYESEEAIDTFFINIMQQQTSE-NE-S-- 133 (352)
Q Consensus 58 ~~~~~~~~l~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~v~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~-~~-~-- 133 (352)
.+.+.++.+..|+++|..+++++++++.++... ..+..|...+++++|++||+++.|.......+..+ .. +
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~-----~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~ 96 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRDDL-----ERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSV 96 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHH
Confidence 556667889999999999999999999999988 99999999999999999999999998876654333 11 1
Q ss_pred ------cccc---chhhhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccCCCCCCC---CccccccccHHHHHHH
Q 018692 134 ------ESST---NMALHDGLHSEIIDIRNRMQQLPPGDNGFDISEKGNKIIRLLSEGKPR---LDISEFENSGEKLFDL 201 (352)
Q Consensus 134 ------~~~~---~~~~r~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vGr~~~~~~l~~~ 201 (352)
+..+ +....+.+++++-.+...++.+..+..--... . ...+...+.+.|. .. ||.+..++++++.
T Consensus 97 ~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~ 173 (889)
T KOG4658|consen 97 ERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVG-E-SLDPREKVETRPIQSESD-VGLETMLEKLWNR 173 (889)
T ss_pred HHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccc-c-cccchhhcccCCCCcccc-ccHHHHHHHHHHH
Confidence 0011 44444556666666666666554222111100 0 0111122333333 33 9999999999999
Q ss_pred HhcCCCCceEEEEEcCCCccHHHHHHHHHccCC-cccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHH
Q 018692 202 LIEGPSGLSVVAILDSSGFDKTAFAADTYNNNH-VKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQL 280 (352)
Q Consensus 202 L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ 280 (352)
|..++. .+++|+||||+||||||+.++|+.. ++.+|+..+||+||+.|+...++++|+..++..... .......+
T Consensus 174 L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~--~~~~~~~~ 249 (889)
T KOG4658|consen 174 LMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE--WEDKEEDE 249 (889)
T ss_pred hccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc--cchhhHHH
Confidence 999774 9999999999999999999999987 999999999999999999999999999999885542 12333478
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc---hhhhh-cCCCCceeecCCChh
Q 018692 281 KKSILQDYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS---KVALH-VETPKYLELPLTCLV 348 (352)
Q Consensus 281 l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT---~va~~-~~~~~~~~~~l~~L~ 348 (352)
++..|.+.|++|||||||||||+ +.+|+.|..++|...+||||++|| +||.. |+... .+++++|.
T Consensus 250 ~~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~~~v~~L~ 318 (889)
T KOG4658|consen 250 LASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--PIEVECLT 318 (889)
T ss_pred HHHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--cccccccC
Confidence 99999999999999999999999 999999999999988999999999 89998 66533 56677664
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=2.3e-25 Score=206.05 Aligned_cols=156 Identities=29% Similarity=0.426 Sum_probs=123.8
Q ss_pred ccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc
Q 018692 191 FENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV 270 (352)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~ 270 (352)
||.++++|.++|.....+.++|+|+||||+||||||..+|++..++.+|+.++|+.+++..+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 67899999999998667799999999999999999999999766999999999999999999999999999999988542
Q ss_pred ccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc---hhhhhcCCCCceeecCCCh
Q 018692 271 RVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS---KVALHVETPKYLELPLTCL 347 (352)
Q Consensus 271 ~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT---~va~~~~~~~~~~~~l~~L 347 (352)
. ....+.......+++.|.+++|||||||||+ ...|+.+...++....||+||+|| .++..+... ...++|++|
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIELEPL 157 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEECSS-
T ss_pred c-ccccccccccccchhhhccccceeeeeeecc-cccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 1 1456778899999999999999999999999 999999998888777899999999 667666542 346788887
Q ss_pred hh
Q 018692 348 VE 349 (352)
Q Consensus 348 ~~ 349 (352)
++
T Consensus 158 ~~ 159 (287)
T PF00931_consen 158 SE 159 (287)
T ss_dssp -H
T ss_pred cc
Confidence 63
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.5e-18 Score=187.89 Aligned_cols=151 Identities=18% Similarity=0.216 Sum_probs=113.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEe---CCC-----------C
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRV---SML-----------H 251 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-----------~ 251 (352)
.++||++..++++..+|..+...+++++|+||||+||||||+.+|+ ++..+|+..+|+.- +.. +
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccccc
Confidence 6799999999999999976666799999999999999999999999 78889998877632 111 1
Q ss_pred C-HHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc--
Q 018692 252 D-FGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS-- 328 (352)
Q Consensus 252 ~-~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT-- 328 (352)
+ ...++.+++..+..... ..... ...+++.|.+||+||||||||+ ..+|+.+.......++||+|||||
T Consensus 262 ~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred chhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 1 12344555555443322 01111 2457788999999999999999 999999988776667899999999
Q ss_pred -hhhhhcCCCCceeecCCChh
Q 018692 329 -KVALHVETPKYLELPLTCLV 348 (352)
Q Consensus 329 -~va~~~~~~~~~~~~l~~L~ 348 (352)
+++..++... .+.+++|+
T Consensus 334 ~~vl~~~~~~~--~~~v~~l~ 352 (1153)
T PLN03210 334 KHFLRAHGIDH--IYEVCLPS 352 (1153)
T ss_pred HHHHHhcCCCe--EEEecCCC
Confidence 6776665544 45555554
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.81 E-value=4.5e-08 Score=94.73 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=84.4
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
..++||+++.++|...|... ......+-|+|++|+|||++++.++++.......-..+++......+...++..|+.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 67999999999999998542 2334557799999999999999999843222212335666666667788999999999
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFD 303 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~ 303 (352)
+...... ....+..++...+.+.+. ++..+||||+++.
T Consensus 110 l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 110 LFGHPPP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred hcCCCCC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence 8763211 123456677777777775 4568999999976
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.81 E-value=2.5e-07 Score=84.69 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=69.9
Q ss_pred HHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccC
Q 018692 195 GEKLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVI 273 (352)
Q Consensus 195 ~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~ 273 (352)
.++++..|... ..+..++.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..|...++....
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---- 100 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---- 100 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC----
Confidence 34455555422 2235688999999999999999999853322 11 22333 33345778899999988876532
Q ss_pred CCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCC-chhHHHHHh
Q 018692 274 IGEDYQLKKSILQDYL-----TNKKYFIVLDDVFDE-SEIWDDLEE 313 (352)
Q Consensus 274 ~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~-~~~~~~l~~ 313 (352)
..+...+...+...+ .+++++||+||++.. ...++.+..
T Consensus 101 -~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 101 -GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred -CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 223333334443332 678899999999884 445666653
No 6
>PF05729 NACHT: NACHT domain
Probab=98.80 E-value=2.7e-08 Score=83.69 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=73.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccc----cceEEEEEeCCCCCHH---HHHHHHHHhcCCCCccccCCCCCHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCLAWVRVSMLHDFG---KILDDIIKSVMPPARVRVIIGEDYQLKK 282 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~il~~i~~~l~~~~~~~~~~~~~~~~l~ 282 (352)
+++.|+|.+|+||||+++.++.+-..... +...+|++........ .+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 47889999999999999999874322222 4567777666543322 344444444332221 1111
Q ss_pred HHHHHH-cCCceEEEEEeCCCCC-c--h-----hHHHHH-hhCCC-CCCCcEEEecc------hhhhhcCCCCceeecCC
Q 018692 283 SILQDY-LTNKKYFIVLDDVFDE-S--E-----IWDDLE-EVLPE-NQNGSRVLILS------KVALHVETPKYLELPLT 345 (352)
Q Consensus 283 ~~l~~~-L~~kr~LlVLDdvw~~-~--~-----~~~~l~-~~l~~-~~~gsrIivTT------~va~~~~~~~~~~~~l~ 345 (352)
.+... -..++++||||++.+. . . .+..+. ..++. ..++++||||| +......... .+.++
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~--~~~l~ 148 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQ--ILELE 148 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCc--EEEEC
Confidence 22222 2568999999999763 1 1 122222 33332 25689999999 2344444432 56677
Q ss_pred Chhh
Q 018692 346 CLVE 349 (352)
Q Consensus 346 ~L~~ 349 (352)
||++
T Consensus 149 ~~~~ 152 (166)
T PF05729_consen 149 PFSE 152 (166)
T ss_pred CCCH
Confidence 7764
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.75 E-value=5.8e-08 Score=92.93 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=81.5
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCccccc------ceEEEEEeCCCCCHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF------DCLAWVRVSMLHDFGKIL 257 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~il 257 (352)
..++||+.+.++|..+|..- ......+.|+|++|+|||++++.++++ ..... -..+|+......+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 67999999999999999752 233456889999999999999999974 22111 135677777767778899
Q ss_pred HHHHHhcC---CCCccccCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 018692 258 DDIIKSVM---PPARVRVIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFD 303 (352)
Q Consensus 258 ~~i~~~l~---~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~ 303 (352)
..|+.++. ...+ ....+..++...+.+.+. +++++||||+++.
T Consensus 93 ~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 93 VELANQLRGSGEEVP---TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 99999884 2221 123344555666666663 5688999999977
No 8
>PF13173 AAA_14: AAA domain
Probab=98.72 E-value=2.3e-08 Score=81.19 Aligned_cols=95 Identities=13% Similarity=0.209 Sum_probs=63.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
-+++.|.|+.|+|||||+++++.+.. .....+++........... +.+ +.+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence 46889999999999999999987432 2344566654443221000 000 33334444
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 289 LTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...+..+++||++.. ...|......+-+..+..+||+|+
T Consensus 58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tg 96 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTG 96 (128)
T ss_pred hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEc
Confidence 444788899999988 777877777776655678999988
No 9
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.70 E-value=3e-08 Score=89.49 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC--CCHHHHHHHH-----HHhcCCCCccccCCCCCHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML--HDFGKILDDI-----IKSVMPPARVRVIIGEDYQLK 281 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~il~~i-----~~~l~~~~~~~~~~~~~~~~l 281 (352)
-..+.|+|.+|+|||||++.+|++.... +|+..+|++++++ +++.++++.+ +.++..+.. ....-....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~---~~~~~~~~~ 91 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE---RHVQVAEMV 91 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH---HHHHHHHHH
Confidence 4578899999999999999999965444 8999999998877 7999999998 333332111 000011122
Q ss_pred HHHHHHH-cCCceEEEEEeCCCC
Q 018692 282 KSILQDY-LTNKKYFIVLDDVFD 303 (352)
Q Consensus 282 ~~~l~~~-L~~kr~LlVLDdvw~ 303 (352)
......+ -.+++.++++|++-.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 2222222 247999999999854
No 10
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=8.1e-08 Score=77.81 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccc-----cceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFY-----FDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKS 283 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~ 283 (352)
-+.+.|+|.+|+|||++++.+.++ .... -...+|+.++...+...+...|+..++.... ...+...+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHH
Confidence 567899999999999999999873 2221 2346799998888999999999999998765 2456777778
Q ss_pred HHHHHcCCc-eEEEEEeCCCCC--chhHHHHHhhCCCCCCCcEEEecc
Q 018692 284 ILQDYLTNK-KYFIVLDDVFDE--SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 284 ~l~~~L~~k-r~LlVLDdvw~~--~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.+.+.+... ..+||+|++..- ...++.+..... ..+.++|+..
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G 123 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVG 123 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEE
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEE
Confidence 888888654 469999999651 344555544443 5566776644
No 11
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=4.8e-07 Score=73.79 Aligned_cols=120 Identities=15% Similarity=0.029 Sum_probs=68.0
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC
Q 018692 189 SEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPA 268 (352)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~ 268 (352)
.|++...+.+...+... ....+.|+|.+|+|||++++.+++. ....-...+++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 36777888888888653 3567889999999999999999984 32222345566554433321111100000
Q ss_pred ccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC----chhHHHHHhhCCCC---CCCcEEEecc
Q 018692 269 RVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE----SEIWDDLEEVLPEN---QNGSRVLILS 328 (352)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~----~~~~~~l~~~l~~~---~~gsrIivTT 328 (352)
............+..+|++||++.. ...+..+...+... ..+..||+||
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~ 127 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGAT 127 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEec
Confidence 0011112223456789999999852 12222222333221 3577888888
No 12
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.58 E-value=9.7e-08 Score=81.99 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=41.8
Q ss_pred ccccccccHHHHHHHHh-cCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC-----CCHHHHHHHH
Q 018692 187 DISEFENSGEKLFDLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML-----HDFGKILDDI 260 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~-~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~il~~i 260 (352)
.++||+++.+++...|. ......+.+.|+|.+|+|||+|.+.++. ....+....+.+..... .....+++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAERGGYVISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHHT--EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEEEeccccchhhHHHHHHHHH
Confidence 37999999999999994 2234578999999999999999999988 44443111222222222 1135666666
Q ss_pred HHhcCC
Q 018692 261 IKSVMP 266 (352)
Q Consensus 261 ~~~l~~ 266 (352)
+.++..
T Consensus 79 ~~~~~~ 84 (185)
T PF13191_consen 79 IDQLLD 84 (185)
T ss_dssp S-----
T ss_pred HHHhhc
Confidence 666443
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.52 E-value=2.8e-07 Score=81.87 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=35.7
Q ss_pred cccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 188 ISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
++||+.+.++|.+++..+. ...+.|+|+.|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 6899999999999998743 678889999999999999999983
No 14
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.51 E-value=2.1e-07 Score=88.06 Aligned_cols=102 Identities=12% Similarity=0.050 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC--CHHHHHHHHHHhcCCCCccccC
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH--DFGKILDDIIKSVMPPARVRVI 273 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~il~~i~~~l~~~~~~~~~ 273 (352)
-++++++..=. .-....|+|++|+||||||+.||++.... +|++++||.+++.+ ++.++++.|...+-... .
T Consensus 157 ~rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st----~ 230 (416)
T PRK09376 157 TRIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST----F 230 (416)
T ss_pred eeeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC----C
Confidence 35566665422 23456799999999999999999965444 89999999999988 77888888762111111 1
Q ss_pred CCCCHH------HHHHHHHHH-cCCceEEEEEeCCCC
Q 018692 274 IGEDYQ------LKKSILQDY-LTNKKYFIVLDDVFD 303 (352)
Q Consensus 274 ~~~~~~------~l~~~l~~~-L~~kr~LlVLDdvw~ 303 (352)
+..... ...+.-..+ -.+++.||++|++-.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111111 111111111 267999999999853
No 15
>PTZ00202 tuzin; Provisional
Probab=98.30 E-value=1.2e-05 Score=77.15 Aligned_cols=128 Identities=12% Similarity=0.086 Sum_probs=82.9
Q ss_pred CccccccccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
..++||+.+...|...|... .....++.|.|++|+|||||++.+.... . + ..++.-+. +..++++.|+..+
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~--~--~qL~vNpr--g~eElLr~LL~AL 333 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M--PAVFVDVR--GTEDTLRSVVKAL 333 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C--c--eEEEECCC--CHHHHHHHHHHHc
Confidence 78999999999999999753 2335689999999999999999998732 2 2 13332233 6799999999999
Q ss_pred CCCCccccCCCCCHHHHHHHHHHHc-----C-CceEEEEEeCCCCC--chhHHHHHhhCCCCCCCcEEEecc
Q 018692 265 MPPARVRVIIGEDYQLKKSILQDYL-----T-NKKYFIVLDDVFDE--SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVLDdvw~~--~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
+.+.. ....++...|++.| . +++.+||+-==.-+ ...+++. ..+.+...-|.|++--
T Consensus 334 GV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~ev 398 (550)
T PTZ00202 334 GVPNV------EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEV 398 (550)
T ss_pred CCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeee
Confidence 97432 23344555555544 2 56777777532211 2233332 2333444567777643
No 16
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.29 E-value=3.3e-06 Score=80.44 Aligned_cols=92 Identities=10% Similarity=-0.057 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC--CCHHHHHHHHHHhcCCCCccccCCCCCHH----HHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML--HDFGKILDDIIKSVMPPARVRVIIGEDYQ----LKK 282 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~il~~i~~~l~~~~~~~~~~~~~~~----~l~ 282 (352)
-..++|+|.+|+|||||++.+++.-.. ++|+..+||.+++. .++.++++.+...+-....+ ....... ...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d--~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFD--EPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCC--CChHHHHHHHHHHH
Confidence 457889999999999999999995333 37999999999966 78999999985432222111 0001111 112
Q ss_pred HHHHHH-cCCceEEEEEeCCCC
Q 018692 283 SILQDY-LTNKKYFIVLDDVFD 303 (352)
Q Consensus 283 ~~l~~~-L~~kr~LlVLDdvw~ 303 (352)
+..... -.+++.+|++|.+-.
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 257999999999854
No 17
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1e-05 Score=75.89 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=79.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc----CCcccccceEEEEE-eCCCCCHHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN----NHVKFYFDCLAWVR-VSMLHDFGKILDDI 260 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~----~~~~~~F~~~~wv~-vs~~~~~~~il~~i 260 (352)
.+++|.+..++.+.+++..+. -....-++|+.|+||||+|+.++.. .....|.|...|.. -+....+++ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 578898888999999987643 2456678999999999999988762 12345667666654 233334333 2233
Q ss_pred HHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCC--CCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 261 IKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDV--FDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdv--w~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...+.... ..+++-++|+|++ ++ ...++.+...+....+++.+|++|
T Consensus 82 ~~~~~~~p--------------------~~~~~kv~iI~~ad~m~-~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 82 IEEVNKKP--------------------YEGDKKVIIIYNSEKMT-EQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HHHHhcCc--------------------ccCCceEEEEechhhcC-HHHHHHHHHHhcCCCCCeEEEEEe
Confidence 33322211 1134445555555 45 888999999998777889988888
No 18
>PRK06893 DNA replication initiation factor; Validated
Probab=98.26 E-value=3.6e-06 Score=75.33 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEe
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRV 247 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~v 247 (352)
...+.++|.+|+|||+|++.+++. .........|+++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeH
Confidence 356789999999999999999983 3322334456654
No 19
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.26 E-value=3e-06 Score=82.62 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=64.4
Q ss_pred CccccccccHHH---HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHH
Q 018692 186 LDISEFENSGEK---LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 186 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
++++|.+..+.. |.+++..+. ...+.++|++|+||||||+.+++. ....| +.++....-..-+++++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVI- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHH-
Confidence 678898777555 777776543 556778999999999999999983 33333 22322211111112222
Q ss_pred hcCCCCccccCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEe
Q 018692 263 SVMPPARVRVIIGEDYQLKKSILQDY-LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLI 326 (352)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIiv 326 (352)
+..... ..+++.+|++|+++.. ....+.+...+.. |+.+++
T Consensus 82 --------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 82 --------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred --------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 222111 1457889999999874 4455666666543 444444
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.19 E-value=1.2e-05 Score=76.00 Aligned_cols=44 Identities=20% Similarity=0.097 Sum_probs=37.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|++..++.+.+++..+. .+.+-++|.+|+||||+|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999887643 44577999999999999999887
No 21
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.1e-05 Score=76.90 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=86.9
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCcccccc-e-EEEEEeCCCCCHHHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD-C-LAWVRVSMLHDFGKILDDII 261 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~il~~i~ 261 (352)
..+.+|+++.+++...|..- +....-+-|+|..|+|||+.++.+.. ++++... . .++|..-...+...++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 56889999999999998752 22233488999999999999999998 5544422 1 68888888889999999999
Q ss_pred HhcCCCCccccCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 018692 262 KSVMPPARVRVIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFD 303 (352)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~ 303 (352)
++++.... ......+....+.+.+. ++.+++|||++..
T Consensus 95 ~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 95 NKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 99974333 35556677777777775 5899999999976
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=1.8e-05 Score=80.73 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=81.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.....++ +..+..=...+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCC
Confidence 789999999999999987653 233445899999999999998776321111110 001110011111111000
Q ss_pred CCCcccc-CCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hhhhhcC
Q 018692 266 PPARVRV-IIGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KVALHVE 335 (352)
Q Consensus 266 ~~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~va~~~~ 335 (352)
...-... .+....+++.+.+... ..++.-++|||++... ...|+.|...+.......++|+|| .+...+-
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0000000 0111222222222221 1234558899999764 567888888886655678888877 3322222
Q ss_pred CCCceeecCCChh
Q 018692 336 TPKYLELPLTCLV 348 (352)
Q Consensus 336 ~~~~~~~~l~~L~ 348 (352)
+. ...+++.+++
T Consensus 168 SR-Cq~f~Fk~Ls 179 (830)
T PRK07003 168 SR-CLQFNLKQMP 179 (830)
T ss_pred hh-eEEEecCCcC
Confidence 22 2356666654
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.13 E-value=7.9e-05 Score=76.06 Aligned_cols=139 Identities=15% Similarity=0.070 Sum_probs=85.6
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccccc---ceEEEEEeCCC---CCHHHHHH
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCLAWVRVSML---HDFGKILD 258 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~il~ 258 (352)
+++++|.+..+..+.+.+... ....+.|+|.+|+||||||+.+++.......+ ...-|+.+... .+...+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 378999999999988887543 35578999999999999999998754333332 12345655421 22222211
Q ss_pred HH---------------HHhcCCCCc---------cc-----cCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhH
Q 018692 259 DI---------------IKSVMPPAR---------VR-----VIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIW 308 (352)
Q Consensus 259 ~i---------------~~~l~~~~~---------~~-----~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~ 308 (352)
.+ +...+.... .. .....+ ...+..|...+.+++++++.|+.|.. ...|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 111111000 00 012222 33577888899999999998877764 5568
Q ss_pred HHHHhhCCCCCCCcEEEe
Q 018692 309 DDLEEVLPENQNGSRVLI 326 (352)
Q Consensus 309 ~~l~~~l~~~~~gsrIiv 326 (352)
+.+...+....+...|++
T Consensus 310 ~~ik~~~~~~~~~~~VLI 327 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLI 327 (615)
T ss_pred hhhhhhcccCccceEEEE
Confidence 888877776655554554
No 24
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.12 E-value=1.7e-05 Score=76.83 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=73.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.++++.+...+.++..|.. .+.+.++|++|+|||++|+.+++.......|+.+.||+++++++..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r---- 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR---- 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----
Confidence 6688889999999999985 34677899999999999999998554455788899999999998776654221
Q ss_pred CCCccccCCCCCHHHHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 266 PPARVRVIIGEDYQLKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
..... -......+...+...- .+++++||+|++..
T Consensus 247 P~~vg---y~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 247 PNGVG---FRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCCCC---eEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 11000 0000112222333322 24789999999965
No 25
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.12 E-value=2e-05 Score=81.15 Aligned_cols=115 Identities=10% Similarity=-0.016 Sum_probs=78.0
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHccCC--c-ccccc--eEEEEEeCCCCCHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYNNNH--V-KFYFD--CLAWVRVSMLHDFGKIL 257 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLA~~v~~~~~--~-~~~F~--~~~wv~vs~~~~~~~il 257 (352)
..+.||+++.++|...|..- .....++-|+|.+|.|||+.++.|.+.-. . ..... ..++|....-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 67889999999999998752 22346778999999999999999986321 0 11222 24666666656778889
Q ss_pred HHHHHhcCCCCccccCCCCCHHHHHHHHHHHcC---CceEEEEEeCCCC
Q 018692 258 DDIIKSVMPPARVRVIIGEDYQLKKSILQDYLT---NKKYFIVLDDVFD 303 (352)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~---~kr~LlVLDdvw~ 303 (352)
..|..++.+..+. ...........+...+. +...+||||+|..
T Consensus 835 qvI~qqL~g~~P~---~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 835 QVLYKQLFNKKPP---NALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHHHHHHcCCCCC---ccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 9999888554431 23333445555555442 2345999999965
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.5e-05 Score=73.85 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=79.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+.-....... ..++..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 789999999999999887643 234567999999999999999886321111100 000000000111111000
Q ss_pred CCCcccc-CCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc-h---hhhhc
Q 018692 266 PPARVRV-IIGEDYQLKKSILQDYL-----TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS-K---VALHV 334 (352)
Q Consensus 266 ~~~~~~~-~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT-~---va~~~ 334 (352)
..-.... ......++.. .+.+.+ .+++-++|+|++... ...++.+...+....+..++|++| + +....
T Consensus 88 ~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 0000000 0001112221 121221 235569999999764 446788887776655677777777 3 22222
Q ss_pred CCCCceeecCCChh
Q 018692 335 ETPKYLELPLTCLV 348 (352)
Q Consensus 335 ~~~~~~~~~l~~L~ 348 (352)
.+. ...+++.|++
T Consensus 167 ~SR-c~~~~~~~l~ 179 (363)
T PRK14961 167 LSR-CLQFKLKIIS 179 (363)
T ss_pred Hhh-ceEEeCCCCC
Confidence 221 2356677664
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=2.3e-05 Score=81.33 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=80.8
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc-------------------cceEEEE
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY-------------------FDCLAWV 245 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 245 (352)
+.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+++.-..... |.-.+++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 3789999999999999987643 1233478999999999999999873211111 0001111
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcE
Q 018692 246 RVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQD-YLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSR 323 (352)
Q Consensus 246 ~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsr 323 (352)
..+....+ .+..++.+.+.. -..+++-++|||++... ...++.|+..+-......+
T Consensus 94 dAas~~kV----------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 94 DAASRTKV----------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred ccccccCH----------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 11100111 111222222211 12356779999999765 7788888888866555677
Q ss_pred EEecc----hhhhhcCCCCceeecCCChh
Q 018692 324 VLILS----KVALHVETPKYLELPLTCLV 348 (352)
Q Consensus 324 IivTT----~va~~~~~~~~~~~~l~~L~ 348 (352)
+|++| .+...+-+. ...+.+.+|+
T Consensus 152 FILaTTe~~kLl~TIlSR-Cq~f~fkpLs 179 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSR-CLQFNLKSLT 179 (944)
T ss_pred EEEECCCchhchHHHHHh-heEEeCCCCC
Confidence 66666 222222111 2356777764
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=3.6e-05 Score=76.58 Aligned_cols=153 Identities=12% Similarity=0.019 Sum_probs=82.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|.+..++.|.+++..+. -...+-++|++|+||||+|+.+++.-...+.+....|.|.+... +.......+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 789999988888888887653 23456899999999999999988743222223223333321100 0000000000000
Q ss_pred CCCccccCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hhhhhcC
Q 018692 266 PPARVRVIIGEDYQLKKSILQDYL-----TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KVALHVE 335 (352)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~va~~~~ 335 (352)
.. .....+.+. .+.+.+ .+++-++|+|+++.. ...++.+...+....+.+.+|++| .+...+.
T Consensus 92 ~~------~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 92 AA------SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred cc------ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00 111122221 122222 346679999999764 567888888886554566666555 2322232
Q ss_pred CCCceeecCCChh
Q 018692 336 TPKYLELPLTCLV 348 (352)
Q Consensus 336 ~~~~~~~~l~~L~ 348 (352)
+. ...+.+.+++
T Consensus 165 SR-c~~~~f~~ls 176 (504)
T PRK14963 165 SR-TQHFRFRRLT 176 (504)
T ss_pred cc-eEEEEecCCC
Confidence 22 2245666654
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.04 E-value=4.8e-05 Score=81.40 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCcc---
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML-HDFGKILDDIIKSVMPPARV--- 270 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~il~~i~~~l~~~~~~--- 270 (352)
+.+|.+.|... ...+++.|.|++|.||||++...... ++.++|+++... -+...++..++..+......
T Consensus 19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~ 91 (903)
T PRK04841 19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCS 91 (903)
T ss_pred chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccc
Confidence 34666666542 35789999999999999999998752 236899999644 45566767777766422111
Q ss_pred -c-----cCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCC-chhH-HHHHhhCCCCCCCcEEEecc
Q 018692 271 -R-----VIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFDE-SEIW-DDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 271 -~-----~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~-~~~~-~~l~~~l~~~~~gsrIivTT 328 (352)
. .....+...+...+-..+. +.+++|||||+-.. .... +.+...++...++.++||||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 92 KSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred hhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 0 0011233334444443433 57899999999552 2222 23333333334566788888
No 30
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=2.8e-05 Score=72.68 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=80.9
Q ss_pred CccccccccHHHHHHHHhcCCCC-ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSG-LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~-~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
..+.+|+.+...+..++..++.. +..+-|.|..|.|||.+.+.+.+.. .. ..+|+++-+.|+...++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHHh
Confidence 56788999999999999877653 4455899999999999999999854 22 358999999999999999999998
Q ss_pred CCCCccccCCCCCHHH---HHHHHHHH--c--CCceEEEEEeCCCC
Q 018692 265 MPPARVRVIIGEDYQL---KKSILQDY--L--TNKKYFIVLDDVFD 303 (352)
Q Consensus 265 ~~~~~~~~~~~~~~~~---l~~~l~~~--L--~~kr~LlVLDdvw~ 303 (352)
+.....+.....+.+. ....+.++ . +++.++||||++..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 6322211111122222 23333331 1 14689999999976
No 31
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=3.5e-05 Score=76.97 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=72.9
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc-------------------ccceEEEE
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF-------------------YFDCLAWV 245 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 245 (352)
+.+++|.+..++.|...+..+. -...+-++|+.|+||||+|+.+.+.-.... .|...+++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3789999999999999887643 234466899999999999999876211100 11112222
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcE
Q 018692 246 RVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY-LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSR 323 (352)
Q Consensus 246 ~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsr 323 (352)
.......+. +...+.+.+... ..+++-++|+|++... ...++.+...+......+.
T Consensus 94 daas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 94 DAASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred ecccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 111111111 112233332221 2356679999999654 6678888888876555666
Q ss_pred EEecc
Q 018692 324 VLILS 328 (352)
Q Consensus 324 IivTT 328 (352)
+|++|
T Consensus 152 fIL~T 156 (546)
T PRK14957 152 FILAT 156 (546)
T ss_pred EEEEE
Confidence 66555
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.96 E-value=9.7e-05 Score=69.17 Aligned_cols=47 Identities=19% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 184 PRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+.+++|+++.++.+..++.... ...+-++|.+|+||||+|+.+.+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 33779999999999999987643 445789999999999999999873
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=97.93 E-value=5.4e-05 Score=71.23 Aligned_cols=122 Identities=14% Similarity=0.102 Sum_probs=68.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccce-EEEEEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-LAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~il~~i~~~l 264 (352)
.+++|.++.++.|.+++..+. ...+-++|++|+||||+|+.+.+.-. ...|.. .+-+..|...+.. .+++++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHHHHHH
Confidence 788998888888887776543 44567899999999999999887310 112211 1111222222221 222222221
Q ss_pred CCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 265 MPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..... . .-.++.-+++||++... ....+.+...+....+.+++|++|
T Consensus 89 ~~~~~----~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 89 AQKKV----T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred Hhccc----c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEe
Confidence 11100 0 00235669999999764 444455555554434567777777
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=7.6e-05 Score=75.36 Aligned_cols=135 Identities=11% Similarity=0.046 Sum_probs=73.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|.+...+.|.+++..+. -...+-++|..|+||||+|+.+.+.-.... |+... +++.=...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~-pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTST-PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCC-CCccCHHHHHHhcCCC
Confidence 789999999999999998653 235667899999999999998876311111 11100 0000001111110000
Q ss_pred CCCcccc-CCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 266 PPARVRV-IIGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 266 ~~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..--... .+....+++.+.+... ..++.-++|+|++... ...++.|...+.....+.++|++|
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 0000000 0111222222222111 1356668999999764 567778887776555567777766
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.90 E-value=5.4e-05 Score=70.63 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=39.1
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|++..++.|..++... ......+.++|++|+|||+||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999988642 233556789999999999999999983
No 36
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.89 E-value=5.4e-05 Score=78.27 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCccccccccHH---HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 185 RLDISEFENSGE---KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 185 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
+++++|.+.... .+.+.+..+ ....+-++|++|+||||||+.+++ ....+|
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 377899887664 455555543 356678999999999999999998 444444
No 37
>PRK04195 replication factor C large subunit; Provisional
Probab=97.87 E-value=8.1e-05 Score=74.05 Aligned_cols=117 Identities=13% Similarity=0.175 Sum_probs=71.4
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
.+++|.+..+++|.+|+..- ....+.+-|+|++|+||||+|+.++++- . |+. +-+..|...+. ..+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~~-ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY--G--WEV-IELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CCE-EEEcccccccH-HHHHHHHHH
Confidence 78999999999999999742 2226788899999999999999999843 2 222 22333433222 233333332
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-c----hhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-S----EIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~----~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...... ....++-+||||++... . ..+..+...+.. .+..||+||
T Consensus 88 ~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~ 137 (482)
T PRK04195 88 AATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTA 137 (482)
T ss_pred hhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEec
Confidence 211110 00136779999999762 1 335666666542 234566666
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.87 E-value=8.2e-05 Score=70.29 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=39.7
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIE---GPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|++..++.+..++.. .......+-++|++|+||||||+.+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 7899999999999888864 2334667789999999999999999983
No 39
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.87 E-value=9.1e-05 Score=69.47 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=39.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+...+.+..++..+. -..++-++|.+|+||||+|+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 789999999999999998642 3567777999999999999999883
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=7.7e-05 Score=75.17 Aligned_cols=140 Identities=9% Similarity=-0.017 Sum_probs=73.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-...+.-...- + .+..+..-...+.|...-.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHHcCCC
Confidence 789999999999999998653 234457899999999999999876321110000000 0 0000000011111111000
Q ss_pred CCCcccc-CCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 266 PPARVRV-IIGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 266 ~~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...-... ......+++.+.+... ..++.-++|+|++... ...++.|+..+..-..++++|++|
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 0000000 0112223333322222 1356669999999765 678888888887655567766655
No 41
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.86 E-value=0.00011 Score=59.07 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=46.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL 289 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (352)
..+.|+|.+|+||||+++.+.. .........+.+..+........... ....... ............+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK-----KASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH-hhhhhcc-----CCCCCHHHHHHHHHHHH
Confidence 5788999999999999999988 33333223444444333221111111 0001111 11222233333444444
Q ss_pred CCc-eEEEEEeCCCC
Q 018692 290 TNK-KYFIVLDDVFD 303 (352)
Q Consensus 290 ~~k-r~LlVLDdvw~ 303 (352)
... ..+|++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 444 48999999988
No 42
>PRK08116 hypothetical protein; Validated
Probab=97.86 E-value=4.8e-05 Score=69.66 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=57.4
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcC
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLT 290 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 290 (352)
-+-++|..|+|||.||..+++ ....+-...++++ ..+++..|........ ..+...+. +.+.
T Consensus 116 gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~~~----~~l~ 177 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSG------KEDENEII----RSLV 177 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccc------cccHHHHH----HHhc
Confidence 467999999999999999999 4433323345553 4556666665543221 11222332 3333
Q ss_pred CceEEEEEeCCCCC-chhHH--HHHhhCCC-CCCCcEEEecc
Q 018692 291 NKKYFIVLDDVFDE-SEIWD--DLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 291 ~kr~LlVLDdvw~~-~~~~~--~l~~~l~~-~~~gsrIivTT 328 (352)
+-. ||||||+... ...|. .+...+.. -.+|..+|+||
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTs 218 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTT 218 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 333 8999999532 33442 23333321 12466799999
No 43
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00019 Score=71.34 Aligned_cols=139 Identities=11% Similarity=-0.016 Sum_probs=73.8
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccce-EEEEEeCCCCCHHHHHHHHHHh
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-LAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~il~~i~~~ 263 (352)
+.+++|-+..+..|...+..+. -..-+-++|..|+||||+|+.+++.-.....+.. ..+...... .....|...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcC
Confidence 3789999998888888776543 2346678999999999999999873211111000 000000000 000111100
Q ss_pred cCCCCcccc-CCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRV-IIGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
......... .+....+++...+... +.+++-++|+|+++.. ...|+.+...+....+.+.+|++|
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 000000000 0111222332222221 2356779999999874 667888888887655667766555
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.85 E-value=6.1e-05 Score=70.99 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHH-H
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSIL-Q 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 286 (352)
++...-.||++|+||||||+.+.. .....|.. +|...+-.+=++ ...+.- +
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-----~sAv~~gvkdlr---------------------~i~e~a~~ 98 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-----LSAVTSGVKDLR---------------------EIIEEARK 98 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-----eccccccHHHHH---------------------HHHHHHHH
Confidence 466666899999999999999998 55555532 233222212122 222222 2
Q ss_pred HHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEe--cc
Q 018692 287 DYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLI--LS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIiv--TT 328 (352)
....+++.+|.+|.|-.- ..+=+.+ +|.-.+|.-|+| ||
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATT 140 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATT 140 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccC
Confidence 233479999999999551 2233333 333356777776 55
No 45
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00016 Score=71.32 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=36.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+.....|...+..+. -...+-++|++|+||||+|+.+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 789998887777777776543 234567899999999999999976
No 46
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=9.7e-06 Score=68.89 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=28.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcc-cccceEEE
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAW 244 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~-~~F~~~~w 244 (352)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999865444 45777774
No 47
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00012 Score=73.02 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=72.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc-------------------cceEEEEE
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY-------------------FDCLAWVR 246 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~ 246 (352)
.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.--.... |.-.+.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 789999999999999997653 1334578999999999999988762211111 11122222
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEE
Q 018692 247 VSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVL 325 (352)
Q Consensus 247 vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIi 325 (352)
.+....++++ ++++..+... -..++.-++|+|++... ...++.+...+....+.+++|
T Consensus 95 aas~~~v~~i-R~l~~~~~~~--------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA--------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc--------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 1111121111 1121111100 11245668999999764 667788888776655577777
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
++|
T Consensus 154 lat 156 (509)
T PRK14958 154 LAT 156 (509)
T ss_pred EEE
Confidence 655
No 48
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00016 Score=73.36 Aligned_cols=139 Identities=9% Similarity=0.019 Sum_probs=71.7
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccccc--ceEEEEEeCCCCCHHHHHHHHHH
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
+++++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.--..... .... +.+++.-...+.|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHc
Confidence 3789998888888888887653 23456789999999999999985421110000 0000 001111111111110
Q ss_pred hcCCCCcccc-CCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 263 SVMPPARVRV-IIGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 263 ~l~~~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.-........ ......+++.+.+... ..++.-++|||+|... ...++.+...+......+++|++|
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 0000000000 0111222222222211 1234558999999765 667888888886655566766655
No 49
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00013 Score=73.32 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=38.6
Q ss_pred CCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 184 PRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.+++|.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 33789999999999999887643 234567899999999999999876
No 50
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00013 Score=74.32 Aligned_cols=155 Identities=13% Similarity=0.019 Sum_probs=81.7
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
+.+++|-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+.-.....+ . +.++..-...+.|...-
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~------~-~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI------T-ATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC------C-CCCCCCCHHHHHHHcCC
Confidence 3789999999999998887653 12345689999999999999987631111000 0 00111001122221100
Q ss_pred CCCCcccc-CCCCCHHH---HHHHHHHH-cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hhhhhc
Q 018692 265 MPPARVRV-IIGEDYQL---KKSILQDY-LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KVALHV 334 (352)
Q Consensus 265 ~~~~~~~~-~~~~~~~~---l~~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~va~~~ 334 (352)
........ ......++ +.+.+... ..+++-++|+|++... ...++.|...+-......++|++| .+...+
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 00000000 00112222 22222211 2356679999999764 677888888887655566766666 332222
Q ss_pred CCCCceeecCCChh
Q 018692 335 ETPKYLELPLTCLV 348 (352)
Q Consensus 335 ~~~~~~~~~l~~L~ 348 (352)
-+. ...+.+.+|+
T Consensus 167 ~SR-C~~~~f~~Ls 179 (647)
T PRK07994 167 LSR-CLQFHLKALD 179 (647)
T ss_pred Hhh-heEeeCCCCC
Confidence 222 2356677664
No 51
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.79 E-value=6.6e-05 Score=71.98 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=40.6
Q ss_pred CccccccccHHHHHHHHhcC--C---------CCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIEG--P---------SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.++.|+++.+++|.+.+... . ...+-+.++|++|+|||+||+.+++ ....+|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 78999999999999887532 0 1245588999999999999999998 444444
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00021 Score=68.90 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=37.3
Q ss_pred CccccccccHHHHHHHHhcCCC--------CceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPS--------GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++++|-+..++.|.+.+..+.. -..-+-++|+.|+|||++|+.+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 6789999999999999986521 244577899999999999998765
No 53
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00016 Score=71.38 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=71.8
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc------CCcc-------------cccceEEEE
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN------NHVK-------------FYFDCLAWV 245 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~------~~~~-------------~~F~~~~wv 245 (352)
+.+++|.+..++.|.+.+..+. -..-+-++|..|+||||+|+.+... +... ..+.-.+.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3789999888888888776643 2346779999999999999988651 0000 011112223
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcE
Q 018692 246 RVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY-LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSR 323 (352)
Q Consensus 246 ~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsr 323 (352)
..+....+.+ .++|+.. .... +.+++-++|+|++... ...++.+...+....+.++
T Consensus 91 daas~~~vdd-IR~Iie~---------------------~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 91 DAASNTSVDD-IKVILEN---------------------SCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred ecccCCCHHH-HHHHHHH---------------------HHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 3322222222 1122211 1110 1245668999999653 5667888888876566777
Q ss_pred EEecc
Q 018692 324 VLILS 328 (352)
Q Consensus 324 IivTT 328 (352)
+|++|
T Consensus 149 fIlat 153 (491)
T PRK14964 149 FILAT 153 (491)
T ss_pred EEEEe
Confidence 77766
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.75 E-value=4.9e-05 Score=67.58 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=37.3
Q ss_pred Ccccc--ccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEe
Q 018692 186 LDISE--FENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRV 247 (352)
Q Consensus 186 ~~~vG--r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~v 247 (352)
+++++ .+...+.+.+++.. .....+.|+|.+|+|||+||+.+++. ........+++.+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~ 74 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPL 74 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeH
Confidence 45552 33356666666543 23567889999999999999999873 3223333445543
No 55
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.72 E-value=0.0001 Score=65.96 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeC
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVS 248 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs 248 (352)
-.++|+|..|+|||||...+.. .....|.++.+++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 4677999999999999999987 577789887777543
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00013 Score=71.40 Aligned_cols=140 Identities=13% Similarity=0.023 Sum_probs=72.5
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
+.+++|-+.....|..++..+. -...+-++|..|+||||+|+.+.+.-........ .......+...+...+...+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCccc
Confidence 3789999999999999888653 1235679999999999999999873211110000 00001111111111110000
Q ss_pred CCCCccccCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 265 MPPARVRVIIGEDYQLKKSILQDY-LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..-.........+..++.+.+... ..++.-++|+|++... ...++.+...+........+|++|
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 000000000011112222222221 2345669999999764 677888888876544455555455
No 57
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00036 Score=67.72 Aligned_cols=141 Identities=12% Similarity=0.027 Sum_probs=73.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEE-eCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVR-VSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~il~~i~~~l 264 (352)
.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|..+.+.-.....++...|.. +..++..=...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 789999988888888887643 233467899999999999999876322111111111110 001111001111111110
Q ss_pred CCCCccccC-CCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 265 MPPARVRVI-IGEDYQLKKSILQDYL-----TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 265 ~~~~~~~~~-~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...-..... .....+++.+ +.+.+ .+++-++|+|++... ...++.+...+....+.+.+|++|
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 000000000 1111233332 22222 245668899998653 567888888887655677776666
No 58
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00043 Score=67.08 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=57.4
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcC
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLT 290 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 290 (352)
++.|.|+.++|||||++.+.. ...+. .+++.......- .....+....+...-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~---------------------~~~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLD---------------------RIELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcc---------------------hhhHHHHHHHHHHhhc
Confidence 999999999999999977765 23222 444433222110 0011111122222212
Q ss_pred CceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 291 NKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 291 ~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.++.+|+||.|.. ...|......+.+.++. +|++|+
T Consensus 93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itg 128 (398)
T COG1373 93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITG 128 (398)
T ss_pred cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEEC
Confidence 2788999999999 88999988888876666 888887
No 59
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00035 Score=71.17 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=38.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999998643 234567899999999999998876
No 60
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00057 Score=68.58 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=37.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988643 123456899999999999999875
No 61
>PRK08727 hypothetical protein; Validated
Probab=97.63 E-value=0.00021 Score=64.17 Aligned_cols=57 Identities=12% Similarity=-0.028 Sum_probs=34.6
Q ss_pred Cccccccc-cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEE
Q 018692 186 LDISEFEN-SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVR 246 (352)
Q Consensus 186 ~~~vGr~~-~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~ 246 (352)
+++++-.. ....+..+... .....+.|+|..|+|||.|++.+++ ...++.....+++
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~ 76 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLP 76 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 55665333 33333333322 2234589999999999999999987 3333333455664
No 62
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.62 E-value=0.00023 Score=66.34 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=65.6
Q ss_pred CccccccccHH---HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHH
Q 018692 186 LDISEFENSGE---KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 186 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
.+.||.+.-+- -|.+++..+ .+..+-.||++|+||||||+.+.+..+-.. ..+|..|..-.-..-.+.|++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 45666444332 223333332 466777999999999999999998443333 456666654433333444444
Q ss_pred hcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHH--HhhCCCCCCCcEEEe--cc
Q 018692 263 SVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDESEIWDDL--EEVLPENQNGSRVLI--LS 328 (352)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l--~~~l~~~~~gsrIiv--TT 328 (352)
+.... ..+.++|-.|.+|.|-. ++.. -..+|.-.+|+-++| ||
T Consensus 212 ~aq~~-------------------~~l~krkTilFiDEiHR----FNksQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 212 QAQNE-------------------KSLTKRKTILFIDEIHR----FNKSQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred HHHHH-------------------HhhhcceeEEEeHHhhh----hhhhhhhcccceeccCceEEEeccc
Confidence 32211 22356788999999855 2222 133455556776655 55
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00036 Score=73.16 Aligned_cols=133 Identities=11% Similarity=0.011 Sum_probs=72.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-...+.... ..++.=...+.|... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g-~ 85 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPG-G 85 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcC-C
Confidence 789999999999999988653 1244678999999999999998763211111100 000000001111100 0
Q ss_pred CCCcc-ccC---CCCCHHHHHHHHHHH-----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 266 PPARV-RVI---IGEDYQLKKSILQDY-----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 266 ~~~~~-~~~---~~~~~~~l~~~l~~~-----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
....+ ... .....+++.+ +++. ..++.-++|||++... ...++.|+..+..-...+.+|++|
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 00000 000 1112222222 2221 2345558899999765 777888888887655677766666
No 64
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00063 Score=65.28 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=38.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+...+.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999997643 245777999999999999999876
No 65
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.60 E-value=0.00068 Score=64.57 Aligned_cols=47 Identities=17% Similarity=0.038 Sum_probs=38.4
Q ss_pred CCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 184 PRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.+++|.+..++.|.+++..+. -...+-++|.+|+||||+|+.+..
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 33789999999999999997643 234667899999999999988865
No 66
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00044 Score=66.43 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=77.6
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
..++||+.+++.+.+|+... ....+-+-|.|.+|.|||.+...++.+..-...=.+.+++....--....++..|...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 77999999999999999864 3456778889999999999999999853222111234555444333456777777777
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcCCc--eEEEEEeCCCC
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLTNK--KYFIVLDDVFD 303 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVLDdvw~ 303 (352)
+..... ......+....+..+..+. -||+|||....
T Consensus 230 ~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 230 LLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 622221 1122256677777777654 58999998754
No 67
>CHL00181 cbbX CbbX; Provisional
Probab=97.54 E-value=0.00079 Score=62.29 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=31.1
Q ss_pred ccccccccHHHHHHHH---hcC----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 187 DISEFENSGEKLFDLL---IEG----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L---~~~----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+++|.+..+++|.++. ... ......+.++|.+|+||||+|+.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5888777777554442 211 11233467899999999999999976
No 68
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00079 Score=68.06 Aligned_cols=45 Identities=20% Similarity=0.049 Sum_probs=37.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+...+.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988643 233467899999999999999886
No 69
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.51 E-value=0.0016 Score=56.29 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=27.2
Q ss_pred CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 291 NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 291 ~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
+.+-++|+|++... ...++.+...+....+.+.+|++|
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 45668999998653 556778888886655566677666
No 70
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.00097 Score=67.89 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=72.4
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEE-eCCCCCHHHHHHHHHHh
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVR-VSMLHDFGKILDDIIKS 263 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~il~~i~~~ 263 (352)
+.+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+.-.....++...|-. +..++..=...+.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3789999988888888887642 234477899999999999988775321111111001110 00011000111111110
Q ss_pred cCCCCccccC-CCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRVI-IGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~-~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
-...-..... .....+++...+... ..+++-++|+|++... ....+.|...+..-...+.+|++|
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 0000000000 111223333322222 2345568899998663 556778888886654566666555
No 71
>PRK10536 hypothetical protein; Provisional
Probab=97.49 E-value=0.00069 Score=61.08 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=40.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEE
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLA 243 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~ 243 (352)
..+.++......++.+|... .++.+.|.+|+|||+||..+..+.-..+.|+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 55777888899999988652 4888999999999999998776432233454433
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00084 Score=68.16 Aligned_cols=45 Identities=18% Similarity=0.041 Sum_probs=38.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|.+.+..+. -..-+-++|..|+||||+|+.+.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999887653 234567899999999999999876
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.47 E-value=0.00046 Score=72.17 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=74.5
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|.+..++.|.+.+... .....++-++|+.|+|||+||+.+.. ... ...+.+..|+-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhcc----
Confidence 56788888888888888642 12355788999999999999999987 332 223444444321111
Q ss_pred HHHHhcCCCCccccCCCCC-HHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCC----C-------CCcEEE
Q 018692 259 DIIKSVMPPARVRVIIGED-YQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPEN----Q-------NGSRVL 325 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~----~-------~gsrIi 325 (352)
.+..-++.... ....+ ...+...++. ....+++||++... ++.++.+...+..+ + ..+-||
T Consensus 525 ~~~~lig~~~g---yvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 525 TVSRLIGAPPG---YVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred cHHHHhcCCCC---CcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 11111222111 01111 1223333322 23459999999875 77777777776533 1 234577
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
+||
T Consensus 599 ~Ts 601 (731)
T TIGR02639 599 MTS 601 (731)
T ss_pred ECC
Confidence 788
No 74
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.47 E-value=0.00059 Score=65.99 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=37.7
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|+++.+++|.+.+... -...+-+-++|++|+|||++|+.+++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 77889999999998877431 12355678999999999999999998
No 75
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.46 E-value=0.00098 Score=61.64 Aligned_cols=122 Identities=14% Similarity=0.149 Sum_probs=61.9
Q ss_pred ccccccccHHHHHHH---HhcC----------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCH
Q 018692 187 DISEFENSGEKLFDL---LIEG----------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDF 253 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~---L~~~----------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (352)
.++|.+..+++|.++ +... .....-+-++|.+|+||||+|+.+..--.-.......-++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 478877777765553 2211 01122567899999999999977655211111111123444442
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC----------chhHHHHHhhCCCCCCCcE
Q 018692 254 GKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE----------SEIWDDLEEVLPENQNGSR 323 (352)
Q Consensus 254 ~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~----------~~~~~~l~~~l~~~~~gsr 323 (352)
.++ +..+.+. ........+... ..-+|+||++... .+.++.+...+.....+-+
T Consensus 99 ~~l----~~~~~g~---------~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 DDL----VGQYIGH---------TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred HHH----hHhhccc---------chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 122 2222111 112222233322 3358999998520 2334556666655445667
Q ss_pred EEecc
Q 018692 324 VLILS 328 (352)
Q Consensus 324 IivTT 328 (352)
||.+|
T Consensus 163 vI~a~ 167 (284)
T TIGR02880 163 VILAG 167 (284)
T ss_pred EEEeC
Confidence 77776
No 76
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00022 Score=57.34 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|-|+|.+|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 468999999999999999994
No 77
>PRK05642 DNA replication initiation factor; Validated
Probab=97.44 E-value=0.00039 Score=62.41 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+.|+|..|+|||.|++.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35778999999999999999987
No 78
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0013 Score=66.92 Aligned_cols=137 Identities=11% Similarity=-0.002 Sum_probs=74.2
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
+.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.....+. ....++.-...+.|....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 3789999999999988887643 234456899999999999999886321111000 001111112233332221
Q ss_pred CCCCccccC-CCCCHHHHH---HHHHHH-cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 265 MPPARVRVI-IGEDYQLKK---SILQDY-LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 265 ~~~~~~~~~-~~~~~~~l~---~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
....-.... .....+++. +.+... ..+++-++|+|++... ....+.|...+......+.+|++|
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t 157 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILAT 157 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 111000000 112222222 221111 1245678999998653 566777877776555567777666
No 79
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.44 E-value=0.0023 Score=67.42 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHHhhccCCCCCCCCCCCCC-----ccccccCCCCC--------CC-CccccccccHHHHHHHHhcC--
Q 018692 142 HDGLHSEIIDIRNRMQQLPPGDNGFDISEKG-----NKIIRLLSEGK--------PR-LDISEFENSGEKLFDLLIEG-- 205 (352)
Q Consensus 142 r~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~-~~~vGr~~~~~~l~~~L~~~-- 205 (352)
...+..++.+-..++..+......|.....- ..++....... .+ .+.+|.+..++.|.+++...
T Consensus 262 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~ 341 (775)
T TIGR00763 262 PEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKL 341 (775)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Confidence 3455566666666777766666555432211 11111111110 01 56889999999999877532
Q ss_pred --CCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 206 --PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 206 --~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
..+..++.++|++|+|||++|+.+.+ ....+|
T Consensus 342 ~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 342 RGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 22345788999999999999999998 444444
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.002 Score=61.72 Aligned_cols=157 Identities=14% Similarity=0.051 Sum_probs=82.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc--cc-eE---EEEEeCCCCCHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY--FD-CL---AWVRVSMLHDFGKILDD 259 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~--F~-~~---~wv~vs~~~~~~~il~~ 259 (352)
.+++|.+..++.|.+.+..+. -..-+-++|+.|+||+|+|..+...--.... .. +. .-..+..... ..+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---VARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---HHHH
Confidence 789999999999999988753 2335779999999999999776542111110 00 00 0000000000 1111
Q ss_pred HHHhcCCC-------Ccc-c--cCCCCCHHHHHHHHHHHcC-----CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcE
Q 018692 260 IIKSVMPP-------ARV-R--VIIGEDYQLKKSILQDYLT-----NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSR 323 (352)
Q Consensus 260 i~~~l~~~-------~~~-~--~~~~~~~~~l~~~l~~~L~-----~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsr 323 (352)
|...-... ..+ . .......++ +..+.+++. +++-++|+|++... ....+.|...+..-.+++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 11100000 000 0 001112233 333334432 45679999999764 6777788887765555677
Q ss_pred EEecc----hhhhhcCCCCceeecCCChh
Q 018692 324 VLILS----KVALHVETPKYLELPLTCLV 348 (352)
Q Consensus 324 IivTT----~va~~~~~~~~~~~~l~~L~ 348 (352)
+|++| .+...+.+. ...+++.+++
T Consensus 174 ~IL~t~~~~~llpti~SR-c~~i~l~~l~ 201 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSR-CRKLRLRPLA 201 (365)
T ss_pred EEEEECCchhchHHhhcc-ceEEECCCCC
Confidence 77777 332222222 3367777775
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.43 E-value=0.00052 Score=61.66 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+.|+|+.|+|||+|++.+++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 82
>PRK09087 hypothetical protein; Validated
Probab=97.43 E-value=0.00065 Score=60.65 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+.+.|+|..|+|||+|++..++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998874
No 83
>PRK08181 transposase; Validated
Probab=97.42 E-value=0.00032 Score=64.11 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=52.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL 289 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (352)
.-+.++|.+|+|||.||..+.+ ........+.++ +..+++..+..... ..+.......+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~------~~~~L~~~l~~a~~---------~~~~~~~l~~l~--- 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFT------RTTDLVQKLQVARR---------ELQLESAIAKLD--- 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeee------eHHHHHHHHHHHHh---------CCcHHHHHHHHh---
Confidence 3478999999999999999987 332222234444 34556666543311 112222222221
Q ss_pred CCceEEEEEeCCCCC--chhH-HHHHhhCCCC-CCCcEEEecc
Q 018692 290 TNKKYFIVLDDVFDE--SEIW-DDLEEVLPEN-QNGSRVLILS 328 (352)
Q Consensus 290 ~~kr~LlVLDdvw~~--~~~~-~~l~~~l~~~-~~gsrIivTT 328 (352)
+-=||||||+... ...+ ..+...+... ..+ .+|+||
T Consensus 167 --~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTS 206 (269)
T PRK08181 167 --KFDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITA 206 (269)
T ss_pred --cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEc
Confidence 3349999999643 2222 2333333211 123 488888
No 84
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.41 E-value=0.0016 Score=59.82 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=74.1
Q ss_pred ccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHcc-CCcc----cccceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 018692 193 NSGEKLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYNN-NHVK----FYFDCLAWVRVSMLHDFGKILDDIIKSVMP 266 (352)
Q Consensus 193 ~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~~-~~~~----~~F~~~~wv~vs~~~~~~~il~~i~~~l~~ 266 (352)
+..+.|-++|..+ .....-+.|||.+|.|||++++..+.. +... ..+ .++.|.....++...+...|+..++.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhCc
Confidence 3445666666554 234667899999999999999998853 2111 112 46777888999999999999999998
Q ss_pred CCccccCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCC
Q 018692 267 PARVRVIIGEDYQLKKSILQDYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~ 303 (352)
+.. ...+...+.......|+. +--+||+|.+-+
T Consensus 123 P~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 123 PYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred ccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 875 334444555555555544 555899999855
No 85
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=0.00064 Score=61.43 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
...+.++|.+|+|||.||..+.+ ........+.++++ .+++..|-...... ...... +..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~--------~~~~~~---l~~- 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNG--------QSGEKF---LQE- 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhcc--------chHHHH---HHH-
Confidence 45788999999999999999998 44443334455543 35555554433211 111222 222
Q ss_pred cCCceEEEEEeCCCCC-chhH--HHHHhhCCCC-CCCcEEEecc
Q 018692 289 LTNKKYFIVLDDVFDE-SEIW--DDLEEVLPEN-QNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~-~~~~--~~l~~~l~~~-~~gsrIivTT 328 (352)
+ .+-=||||||+... ...| +.+...+... .+.--+|+||
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitS 203 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLT 203 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 2 34559999999542 2333 3344444321 1223368888
No 86
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.39 E-value=0.00074 Score=60.41 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccc----cceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc-----cCCCCC
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR-----VIIGED 277 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~-----~~~~~~ 277 (352)
..-.++.|+|.+|+|||+|+.+++-....... -..++|++....++..++.+ +++..+...... .....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 34678999999999999999998743222221 35789999888887655443 444433321110 011122
Q ss_pred HH---HHHHHHHHHcC-C-ceEEEEEeCCCC
Q 018692 278 YQ---LKKSILQDYLT-N-KKYFIVLDDVFD 303 (352)
Q Consensus 278 ~~---~l~~~l~~~L~-~-kr~LlVLDdvw~ 303 (352)
.+ .+...+...+. . +--|||+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 23 33445555553 3 567999999853
No 87
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.39 E-value=0.0015 Score=58.35 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=65.0
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIE--GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
++++|.+.+++.|++--.. ......-+-++|..|.|||+|++.+.+.-.-+. .--|.|++.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------------- 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------------- 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-------------
Confidence 8899999999988875532 122344556799999999999999987211111 112233221
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC--chhHHHHHhhCC
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE--SEIWDDLEEVLP 316 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~ 316 (352)
.-.+...+.+.|+. ...||+|.+||+.=+ ...+..++..+.
T Consensus 90 ----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 90 ----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred ----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 11233444444442 357999999998543 566777877775
No 88
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.39 E-value=0.00054 Score=72.50 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=37.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++||+++.+++++.|..... .-+.++|.+|+|||++|+.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999987542 2345999999999999998876
No 89
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.37 E-value=0.0002 Score=63.07 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=36.0
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIE---GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
++++|.+.-++++.-++.. ....+..+-.+|++|+||||||..+.+ ....+|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 8999998888876655542 334577888999999999999999999 555555
No 90
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.36 E-value=0.0009 Score=60.31 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCC
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIG 275 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~ 275 (352)
..+.++......+...+-++|.+|+|||+||..+.+. ....-..++++ ++.+++..+-..... ..
T Consensus 86 ~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~i------t~~~l~~~l~~~~~~-------~~ 150 (244)
T PRK07952 86 SKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLII------TVADIMSAMKDTFSN-------SE 150 (244)
T ss_pred HHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEE------EHHHHHHHHHHHHhh-------cc
Confidence 3444444332223456789999999999999999984 32222234444 345555555443321 11
Q ss_pred CCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHH--HHhhCCCC-CCCcEEEecc
Q 018692 276 EDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDD--LEEVLPEN-QNGSRVLILS 328 (352)
Q Consensus 276 ~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~--l~~~l~~~-~~gsrIivTT 328 (352)
.+...+.. .+. +-=||||||+... ...|.. +...+... ...-.+|+||
T Consensus 151 ~~~~~~l~----~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitS 202 (244)
T PRK07952 151 TSEEQLLN----DLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLT 202 (244)
T ss_pred ccHHHHHH----Hhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 12223332 233 3448899999664 445542 33333211 1233477788
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.35 E-value=0.00062 Score=62.15 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=32.7
Q ss_pred CccccccccHHHHHHH---Hhc----------CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDL---LIE----------GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~---L~~----------~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..+++|.+. ... ..+....+.++|++|+||||+|+.+++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 3578887777666533 311 023456677999999999999999976
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.35 E-value=0.00039 Score=73.60 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=75.0
Q ss_pred CccccccccHHHHHHHHhc-------CCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIE-------GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|.+..++.+.+.+.. +.....++.++|+.|+|||.||+.+... +-......+-+.+|.-.+ .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~-----~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE-----A 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh-----h
Confidence 6789999999999998853 1234668899999999999999887662 211111112222221110 0
Q ss_pred HHHHhcCCCCccccCCCCCH-HHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCC-----------CCcEEE
Q 018692 259 DIIKSVMPPARVRVIIGEDY-QLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQ-----------NGSRVL 325 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~-----------~gsrIi 325 (352)
.-...+-+..+. .-+.+. ..+...+++ ....+|+||++... +..++.+...+..+. ..+-||
T Consensus 639 ~~~~~l~g~~~g--yvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 639 HTVSRLKGSPPG--YVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred hhhccccCCCCC--cccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 011122222111 011111 223333333 45569999999765 777777877775442 456688
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
+||
T Consensus 714 ~TS 716 (852)
T TIGR03345 714 LTS 716 (852)
T ss_pred EeC
Confidence 888
No 93
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.34 E-value=0.0021 Score=53.16 Aligned_cols=110 Identities=11% Similarity=0.180 Sum_probs=81.0
Q ss_pred chhhhchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcCChHHHHHHHHHH
Q 018692 26 LTDSTNLAPLFQNLLTEFEIITTTLLGNYEADMARHLIQLIRQEFDESKMSLPFLQLLDLEESDEEDVKRPEILEILEDI 105 (352)
Q Consensus 26 ~~~sa~l~~v~~~l~~~~~~~~s~ll~~~~~~~~~~~~~~l~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~v~~Wl~~l 105 (352)
++++|++|++++.|+..+... .+....++.-+++|...++.|..++++++.....-. ..-+.-++++
T Consensus 5 L~~gaalG~~~~eLlk~v~~~---------~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld----~~~~ee~e~L 71 (147)
T PF05659_consen 5 LVGGAALGAVFGELLKAVIDA---------SKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELD----RPRQEEIERL 71 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC----CchhHHHHHH
Confidence 567888888888886554211 234555677889999999999999999998754331 2337788899
Q ss_pred HHHHHhHHHHHHHhHHhhhcccccCCccccccchhhhhhHHHHHHHHHHHhhccC
Q 018692 106 NDFVYESEEAIDTFFINIMQQQTSENESESSTNMALHDGLHSEIIDIRNRMQQLP 160 (352)
Q Consensus 106 r~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~l~~~l~~i~ 160 (352)
.+...+++++++.|.- ++++++...++.+++|+++.+.+....
T Consensus 72 ~~~L~~g~~LV~k~sk------------~~r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 72 KELLEKGKELVEKCSK------------VRRWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHHHHhcc------------ccHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 9999999999999843 222266677788888888888877653
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0023 Score=63.59 Aligned_cols=46 Identities=13% Similarity=-0.094 Sum_probs=37.6
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|.+...+.|.+++..+. -....-++|..|+||||+|+.+..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999997643 234456799999999999999876
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0019 Score=65.59 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=37.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+...+.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999987643 234556899999999999998876
No 96
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0025 Score=65.08 Aligned_cols=48 Identities=13% Similarity=-0.029 Sum_probs=38.6
Q ss_pred CCCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 183 KPRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+.+++|.+...+.|.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 334789999999999999998653 234567899999999999988765
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0019 Score=65.35 Aligned_cols=46 Identities=15% Similarity=0.032 Sum_probs=36.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 788998888888888776542 2356668999999999999998873
No 98
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.28 E-value=0.0011 Score=59.01 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=57.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh-cCCCCcc-ccCCC
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS-VMPPARV-RVIIG 275 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~-l~~~~~~-~~~~~ 275 (352)
|-+.|..+-..-.++-|+|.+|+|||++|.+++.+ ....-..++|++.. .++...+. ++... ....... .....
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~ 87 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEP 87 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeC
Confidence 33344333344679999999999999999998763 22234567899887 66655543 23322 0000000 00111
Q ss_pred CCHH---HHHHHHHHHcCCceEEEEEeCCC
Q 018692 276 EDYQ---LKKSILQDYLTNKKYFIVLDDVF 302 (352)
Q Consensus 276 ~~~~---~l~~~l~~~L~~kr~LlVLDdvw 302 (352)
.+.. .....+...+..+--++|+|.+-
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 88 SSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 2222 33344444554566799999984
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.28 E-value=0.0019 Score=68.69 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=75.4
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|.+..++.+.+.+... .....++.++|+.|+|||++|+.+.. .....-...+-+..+.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccch---
Confidence 57899999999999988742 12356788999999999999999987 2222112223333333211111
Q ss_pred HHHHhcCCCCccccCCCC-CHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCC-----------CCcEEE
Q 018692 259 DIIKSVMPPARVRVIIGE-DYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQ-----------NGSRVL 325 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~-----------~gsrIi 325 (352)
...+-+..+. .-+. ....+...++. ....+|+||++... +..++.|...+..+. ..+-||
T Consensus 640 --~~~l~g~~~g--~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 640 --VARLIGAPPG--YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred --HHHhcCCCCC--ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 1111111111 0111 11223333332 23359999999775 778888888775431 234488
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
+||
T Consensus 713 ~TS 715 (852)
T TIGR03346 713 MTS 715 (852)
T ss_pred EeC
Confidence 888
No 100
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.28 E-value=0.0013 Score=64.70 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccccc--ceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
..-+.|+|..|+|||.|++.+.+ .+.... -.++++ +..+++..+...+.... .....+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-----------~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTH-----------KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-----------hHHHHHH
Confidence 45678999999999999999988 333221 122333 34567777766654210 1123333
Q ss_pred HHcCCceEEEEEeCCCCC--chhH-HHHHhhCCC-CCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDE--SEIW-DDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~--~~~~-~~l~~~l~~-~~~gsrIivTT 328 (352)
+.+. ..-+|||||+... ...+ +.+...+.. ...|..||+|+
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlts 246 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSS 246 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4333 3348899999642 1222 333333321 12455799997
No 101
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.27 E-value=0.0005 Score=62.71 Aligned_cols=93 Identities=12% Similarity=0.215 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccccc-ceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCC-CHH----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGE-DYQ---- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~-~~~---- 279 (352)
-.-++|.|.+|+|||||++.+++ .++.+| +.++++-+.+.. .+.++.+++...-...... ....+. ...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35678999999999999999998 555455 446777777665 4456666665432111110 001111 111
Q ss_pred -HHHHHHHHHc--C-CceEEEEEeCCCC
Q 018692 280 -LKKSILQDYL--T-NKKYFIVLDDVFD 303 (352)
Q Consensus 280 -~l~~~l~~~L--~-~kr~LlVLDdvw~ 303 (352)
...-.+.+++ + ++..|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1222345555 3 8999999999854
No 102
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0032 Score=58.98 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=73.5
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc-------------------ccceEEEEEe
Q 018692 187 DISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF-------------------YFDCLAWVRV 247 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~v 247 (352)
.++|-+....++..+.........-+-+.|++|+||||+|..+.+.---.. ..+....+.-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467777888888888885432233488999999999999998876311111 0112233333
Q ss_pred CCCCC---HHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcE
Q 018692 248 SMLHD---FGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSR 323 (352)
Q Consensus 248 s~~~~---~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsr 323 (352)
|.... ..+..+++......... .++.-++++|++... .+.-+.+...+......+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 33222 12222333222221110 246779999999775 5556667777766667888
Q ss_pred EEecc
Q 018692 324 VLILS 328 (352)
Q Consensus 324 IivTT 328 (352)
+|++|
T Consensus 142 ~il~~ 146 (325)
T COG0470 142 FILIT 146 (325)
T ss_pred EEEEc
Confidence 99988
No 103
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.26 E-value=0.003 Score=66.28 Aligned_cols=95 Identities=9% Similarity=0.091 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCCCCCCC-----ccccccCCCCCCC---------CccccccccHHHHHHHHhcC---
Q 018692 143 DGLHSEIIDIRNRMQQLPPGDNGFDISEKG-----NKIIRLLSEGKPR---------LDISEFENSGEKLFDLLIEG--- 205 (352)
Q Consensus 143 ~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------~~~vGr~~~~~~l~~~L~~~--- 205 (352)
.....++.+-..+++.+......|.+...- +-++......... .+.+|.++.+++|+++|...
T Consensus 265 ~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~ 344 (784)
T PRK10787 265 KEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV 344 (784)
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc
Confidence 445555555566666666666665443221 2222222111111 56899999999999998741
Q ss_pred -CCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 206 -PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 206 -~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
...-.++.++|++|+||||+|+.+.. .....|
T Consensus 345 ~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 345 NKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred ccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 22355789999999999999999997 444444
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0041 Score=59.19 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=84.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc--ccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF--YFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
..++|.+...+.+...+..+. -...+-|.|..|+||||+|..+...--... .+... ....++.--...+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 789999999999999997653 234577899999999999998776321110 01111 001111111122333222
Q ss_pred cC-------CCCccc---cCCCCCHHHHHHHHHHHcC-----CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEec
Q 018692 264 VM-------PPARVR---VIIGEDYQLKKSILQDYLT-----NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLIL 327 (352)
Q Consensus 264 l~-------~~~~~~---~~~~~~~~~l~~~l~~~L~-----~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivT 327 (352)
-. .+.... .......+++ ..+.+++. +++-++|+|++... ....+.+...+.....+..+|++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 10 000000 0011222332 23444443 46679999999764 66677777777654445555555
Q ss_pred c----hhhhhcCCCCceeecCCChhh
Q 018692 328 S----KVALHVETPKYLELPLTCLVE 349 (352)
Q Consensus 328 T----~va~~~~~~~~~~~~l~~L~~ 349 (352)
| .+.....+.. ..+++.|+++
T Consensus 178 t~~~~~llptIrSRc-~~i~l~pl~~ 202 (351)
T PRK09112 178 SHSSGRLLPTIRSRC-QPISLKPLDD 202 (351)
T ss_pred ECChhhccHHHHhhc-cEEEecCCCH
Confidence 5 3333333322 3567777653
No 105
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.26 E-value=0.0037 Score=52.79 Aligned_cols=136 Identities=16% Similarity=0.122 Sum_probs=73.4
Q ss_pred cccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc----CCcc--------------cccceEEEEEeCCC-
Q 018692 190 EFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN----NHVK--------------FYFDCLAWVRVSML- 250 (352)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~----~~~~--------------~~F~~~~wv~vs~~- 250 (352)
|-++..+.|.+.+..+. -...+-++|..|+||+|+|..+... .... ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 34455566666665542 2345678999999999999887542 1110 11222333322221
Q ss_pred --CCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEec
Q 018692 251 --HDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLIL 327 (352)
Q Consensus 251 --~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivT 327 (352)
..++++- ++...+..... .+++=++|+|++... .+.++.|+..+-....++.+|++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2222221 33332222211 235668999999876 88889999888776678998888
Q ss_pred c----hhhhhcCCCCceeecCCChh
Q 018692 328 S----KVALHVETPKYLELPLTCLV 348 (352)
Q Consensus 328 T----~va~~~~~~~~~~~~l~~L~ 348 (352)
| .+-...-+.. ..+++.+|+
T Consensus 139 t~~~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTS-EEEEE----
T ss_pred ECChHHChHHHHhhc-eEEecCCCC
Confidence 8 3444443433 356666654
No 106
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.25 E-value=0.0016 Score=69.04 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=66.9
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|.+..++.+.+.+... +....++.++|+.|+|||+||+.+.+. ....-...+.+..+.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 56889999988888888631 223457889999999999999999862 211112223333332111 1
Q ss_pred HHHHhcCCCCccccCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCC-chhHHHHHhhCCC
Q 018692 259 DIIKSVMPPARVRVIIGEDYQLKKSILQDYLTN-KKYFIVLDDVFDE-SEIWDDLEEVLPE 317 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~~-~~~~~~l~~~l~~ 317 (352)
.....+-+..+. ..+.+... .+.+.++. ..-+|+||++... ...++.+...+..
T Consensus 641 ~~~~~LiG~~pg--y~g~~~~g---~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 641 HSVSRLVGAPPG--YVGYEEGG---YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hhHHHHhCCCCc--ccccchhH---HHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 111222222111 11111111 12233322 2359999999754 7778888777653
No 107
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.23 E-value=0.0013 Score=57.72 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=55.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC-ccc-cCCCCCH---HHH
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPA-RVR-VIIGEDY---QLK 281 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~-~~~-~~~~~~~---~~l 281 (352)
+.-.++-|+|.+|+|||+++.++..+ ....-...+|++... ++...+.+ ++....... ... .....+. ...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45679999999999999999988763 223346789998876 66665544 333221000 000 0111222 233
Q ss_pred HHHHHHHcCC-ceEEEEEeCCC
Q 018692 282 KSILQDYLTN-KKYFIVLDDVF 302 (352)
Q Consensus 282 ~~~l~~~L~~-kr~LlVLDdvw 302 (352)
...+...+.. +.-+||+|.+-
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 5555555544 45699999984
No 108
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.23 E-value=0.00096 Score=60.69 Aligned_cols=105 Identities=20% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc----cceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc-
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR- 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~- 271 (352)
.|-+.|..+=..-.+.=|+|.+|+|||+|+.+++-+..+... =...+|++-...|+..++. +|++..+....+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l 104 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEIL 104 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhh
Confidence 344444333223568889999999999999888754343322 2358999999999988775 5676654332210
Q ss_pred ----cCCCCCHHHHH---HHHHHHcC-CceEEEEEeCCC
Q 018692 272 ----VIIGEDYQLKK---SILQDYLT-NKKYFIVLDDVF 302 (352)
Q Consensus 272 ----~~~~~~~~~l~---~~l~~~L~-~kr~LlVLDdvw 302 (352)
.....+.+++. ..+...+. .+--|||+|.+-
T Consensus 105 ~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 105 DNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred hceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchH
Confidence 01123344443 33444443 455599999984
No 109
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.00075 Score=57.52 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.1
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcc-cccceEEEE
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAWV 245 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~-~~F~~~~wv 245 (352)
.|.|+|++|+||||||+.+.....+. -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 47899999999999999987642222 234555554
No 110
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.22 E-value=0.0019 Score=62.47 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=37.1
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|.+..+++|.+.+... -...+-+.++|++|+|||+||+.+++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 78999999998888776421 02356678999999999999999998
No 111
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.22 E-value=0.0011 Score=63.03 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=64.4
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc-ccce-EEEEEeCCCC-CHHHHHHHHHHhcCCCCcc
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDC-LAWVRVSMLH-DFGKILDDIIKSVMPPARV 270 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~-~~~~il~~i~~~l~~~~~~ 270 (352)
-..++++.+..=..+ .-+.|+|.+|+|||||++.+.+ .+.. +=+. .+|+.+.+.. .+.++++.+...+.....+
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 445688888753322 3558999999999999999877 3322 2234 4777777654 6788888887766554321
Q ss_pred cc-CCCCCHHHHHHHHHHHc--CCceEEEEEeCCC
Q 018692 271 RV-IIGEDYQLKKSILQDYL--TNKKYFIVLDDVF 302 (352)
Q Consensus 271 ~~-~~~~~~~~l~~~l~~~L--~~kr~LlVLDdvw 302 (352)
.. ..............+++ .+++.+||+|++-
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 00 00001111122222222 5799999999984
No 112
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.22 E-value=0.0039 Score=55.36 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=61.0
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccccc------ceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc---
Q 018692 200 DLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF------DCLAWVRVSMLHDFGKILDDIIKSVMPPARV--- 270 (352)
Q Consensus 200 ~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~--- 270 (352)
+.|...-..-.++.|+|.+|+|||+|+.++.-.. ...- ...+|+.....++...+. ++..........
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~ 86 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLD 86 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhc
Confidence 3333333446799999999999999999887532 1122 456899888887765554 333333222110
Q ss_pred --ccCCCCCHHHHHHHHHHHcC---C-ceEEEEEeCCCC
Q 018692 271 --RVIIGEDYQLKKSILQDYLT---N-KKYFIVLDDVFD 303 (352)
Q Consensus 271 --~~~~~~~~~~l~~~l~~~L~---~-kr~LlVLDdvw~ 303 (352)
......+.+++...+...+. . +--|+|+|.+..
T Consensus 87 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 87 NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 00122455666666666543 3 455999999853
No 113
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.21 E-value=0.00097 Score=70.63 Aligned_cols=131 Identities=12% Similarity=0.152 Sum_probs=73.8
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|-+..++.+.+.+... ......+-++|+.|+|||+||+.+.+ .+-..-...+-+..+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH--
Confidence 67889999999998887632 22345677899999999999999876 22111112233333322111111
Q ss_pred HHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCce-EEEEEeCCCCC-chhHHHHHhhCCCC-----------CCCcEEE
Q 018692 259 DIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKK-YFIVLDDVFDE-SEIWDDLEEVLPEN-----------QNGSRVL 325 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr-~LlVLDdvw~~-~~~~~~l~~~l~~~-----------~~gsrIi 325 (352)
..-++.+.. ..+.+.. ..+.+.++.+. .+++||++... ++.++.+...+..+ ...+-||
T Consensus 585 --~~l~g~~~g---yvg~~~~---~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 585 --SKLIGSPPG---YVGYNEG---GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred --HHhcCCCCc---ccCcCcc---chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 111121111 0111111 12333444444 58999999775 77788888777643 1345677
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
+||
T Consensus 657 ~Ts 659 (821)
T CHL00095 657 MTS 659 (821)
T ss_pred EeC
Confidence 787
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0046 Score=61.79 Aligned_cols=46 Identities=15% Similarity=-0.103 Sum_probs=37.3
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|-+...+.|...+..+. -....-++|..|+||||+|+.+.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 3789999988999999987653 234557899999999999997765
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.003 Score=64.95 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=37.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+...+.|.+++..+. -....-++|+.|+||||+|+.+..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999997653 234456899999999999998875
No 116
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.19 E-value=0.00027 Score=56.16 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 117
>PRK06526 transposase; Provisional
Probab=97.18 E-value=0.0006 Score=61.94 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+.++|.+|+|||+||..+.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHH
Confidence 4578999999999999999876
No 118
>PRK09183 transposase/IS protein; Provisional
Probab=97.17 E-value=0.00094 Score=60.89 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+.|+|.+|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4567999999999999999976
No 119
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0014 Score=66.11 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=43.7
Q ss_pred CccccccccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIEG----PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.+=+|.++.+++|++.|.-. .-+-.+++.||++|||||.|++.+.. .....|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 56789999999999999642 33457999999999999999999998 666666
No 120
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.17 E-value=0.0082 Score=61.88 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=84.6
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCccc-
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML-HDFGKILDDIIKSVMPPARVR- 271 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~il~~i~~~l~~~~~~~- 271 (352)
.+.+|.+.|... .+.+.+-|..++|.|||||+-.... .... =..+.|.+.+.+ -+....++.++..++.-.++-
T Consensus 23 ~R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~ 98 (894)
T COG2909 23 VRPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLG 98 (894)
T ss_pred ccHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHHHHHHhCcccc
Confidence 356788888765 3589999999999999999998875 2221 235899988765 466788888888777433320
Q ss_pred --------cCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCC--chhHHHHHhhCCCCCCCcEEEecc
Q 018692 272 --------VIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFDE--SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 272 --------~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~--~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.....+...+...+..-+. .+...+||||.--. +.--..+.-.+....++-..|+||
T Consensus 99 ~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 99 DEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 0122344445555555553 47899999996331 333333433344444577889999
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0025 Score=62.79 Aligned_cols=46 Identities=15% Similarity=-0.053 Sum_probs=37.8
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999987643 235567899999999999998865
No 122
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.13 E-value=0.0027 Score=59.45 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=63.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc--
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR-- 271 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~-- 271 (352)
|-++|...=..-.++-|+|.+|+|||+|+.+++-...... .=...+||+...+|+.+++.+ +++.++......
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~ 163 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLD 163 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcC
Confidence 3344544333467888999999999999988764322221 123689999999999888754 566665442210
Q ss_pred ---cCCCCCHHHHH---HHHHHHcC-CceEEEEEeCCCC
Q 018692 272 ---VIIGEDYQLKK---SILQDYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 272 ---~~~~~~~~~l~---~~l~~~L~-~kr~LlVLDdvw~ 303 (352)
.....+.+... ..+...+. .+--|||+|.+-.
T Consensus 164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 01112333333 34444443 3445899999853
No 123
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.12 E-value=0.00042 Score=65.46 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=40.9
Q ss_pred CccccccccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEG----PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.++.++++++++... +.+.+++.++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999753 335688999999999999999999874
No 124
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0015 Score=67.29 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=81.7
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|-+..++.+.+.+... ...++++-.+|+.|||||.||+.+... .-+.=+..+-+.+|+- .-+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy-----~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEY-----MEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHH-----HHH
Confidence 67999999999999888642 345778888999999999999988762 1111122333333321 122
Q ss_pred HHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceE-EEEEeCCCCC-chhHHHHHhhCCCCC-----------CCcEEE
Q 018692 259 DIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKY-FIVLDDVFDE-SEIWDDLEEVLPENQ-----------NGSRVL 325 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVLDdvw~~-~~~~~~l~~~l~~~~-----------~gsrIi 325 (352)
.-++.+-+..+. .-+.+. --.|-+.++.+.| .|.||.|... ++.++.+...|.++. ..+-||
T Consensus 564 HsVSrLIGaPPG--YVGyee---GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 564 HSVSRLIGAPPG--YVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHhCCCCC--Cceecc---ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 223333333332 111111 2344555666877 8889999875 888888888887432 236688
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
+||
T Consensus 639 mTS 641 (786)
T COG0542 639 MTS 641 (786)
T ss_pred Eec
Confidence 888
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.10 E-value=0.0051 Score=56.17 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=33.9
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHH
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKIL 257 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il 257 (352)
-.+++..++..+ .-+-+.|.+|+|||+||+.+.. ..... ...++.+...+..+++
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHh
Confidence 345555555542 2445899999999999999986 33222 3445555555544443
No 126
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.10 E-value=0.00095 Score=59.28 Aligned_cols=121 Identities=11% Similarity=0.143 Sum_probs=66.9
Q ss_pred Ccc-cccc-ccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHccCCcccccc--eEEEEEeCCCCCHHHHHHHH
Q 018692 186 LDI-SEFE-NSGEKLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CLAWVRVSMLHDFGKILDDI 260 (352)
Q Consensus 186 ~~~-vGr~-~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~il~~i 260 (352)
+++ +|-. +..-...+.+..+ ......+-|+|..|+|||.|.+.+++ ...+... .++++ +..+..+.+
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~ 79 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREF 79 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHH
Confidence 444 4643 3334444545443 33455688999999999999999998 4443222 24455 455666666
Q ss_pred HHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC--chhHHH-HHhhCCC-CCCCcEEEecc
Q 018692 261 IKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE--SEIWDD-LEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~--~~~~~~-l~~~l~~-~~~gsrIivTT 328 (352)
...+.... . ..+++.+. .-=+|++||+..- ...|.. +...+.. ...|.+||+|+
T Consensus 80 ~~~~~~~~---------~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 80 ADALRDGE---------I----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp HHHHHTTS---------H----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHccc---------c----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 66554321 1 22333333 2337899999652 223322 2222211 12466899998
No 127
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.09 E-value=0.0015 Score=64.10 Aligned_cols=98 Identities=9% Similarity=0.181 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
..-+.|+|..|+|||+|++.+.+ .+...-...++++ ...+...+...+... . ...++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 45678999999999999999998 3332222334443 344555555544321 1 1223333
Q ss_pred cCCceEEEEEeCCCCC-ch-h-HHHHHhhCCC-CCCCcEEEecc
Q 018692 289 LTNKKYFIVLDDVFDE-SE-I-WDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~-~~-~-~~~l~~~l~~-~~~gsrIivTT 328 (352)
+. ..-+|++||+... .. . -+.+...+.. ...|..||+||
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts 242 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISS 242 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEec
Confidence 33 3348889998542 11 1 1223332210 11355788888
No 128
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.09 E-value=0.00021 Score=61.30 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
..-+.++|..|+|||.||..+.+.. +...+. +.++ +..+++..+-..- . ..........+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~-v~f~------~~~~L~~~l~~~~----~-----~~~~~~~~~~l--- 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGYS-VLFI------TASDLLDELKQSR----S-----DGSYEELLKRL--- 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEE------EHHHHHHHHHCCH----C-----CTTHCHHHHHH---
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcc-eeEe------ecCceeccccccc----c-----ccchhhhcCcc---
Confidence 4568899999999999999998732 122232 4445 4556666654321 1 11222222222
Q ss_pred cCCceEEEEEeCCCCC
Q 018692 289 LTNKKYFIVLDDVFDE 304 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~ 304 (352)
. +-=||||||+-..
T Consensus 107 -~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 107 -K-RVDLLILDDLGYE 120 (178)
T ss_dssp -H-TSSCEEEETCTSS
T ss_pred -c-cccEeccccccee
Confidence 2 2348889999764
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.08 E-value=0.0024 Score=62.70 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccccc-c-eEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF-D-CLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
..-+-|+|.+|+|||.|++.+++ .+.... + .+.|++ ..+++.++...+... +.... .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~---------~~~~f----~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLVDSMKEG---------KLNEF----R 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHhcc---------cHHHH----H
Confidence 44588999999999999999998 444432 2 345553 345666666655321 11222 2
Q ss_pred HHcCCceEEEEEeCCCCC--chhH-HHHHhhCCC-CCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDE--SEIW-DDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~--~~~~-~~l~~~l~~-~~~gsrIivTT 328 (352)
+.+..+.-+|+|||+... ...+ +.+...+.. ...|..||+||
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIits 234 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS 234 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 222334558999999741 1112 223222221 12345688877
No 130
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.08 E-value=0.002 Score=62.74 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccccc--ceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
...+.|+|..|+|||.|++.+++ .+.... ...++++ ..++..++...+... ........+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~---------~~~~~~~~~- 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNN---------KMEEFKEKY- 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC---------CHHHHHHHH-
Confidence 45678999999999999999998 443332 1244553 344555555544321 122332222
Q ss_pred HHcCCceEEEEEeCCCCC--chhH-HHHHhhCCC-CCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDE--SEIW-DDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~--~~~~-~~l~~~l~~-~~~gsrIivTT 328 (352)
.+ .-+|+|||+... .+.+ +.+...+.. ...|..||+||
T Consensus 198 ---~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits 239 (405)
T TIGR00362 198 ---RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTS 239 (405)
T ss_pred ---Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEec
Confidence 22 238999999642 1112 223333321 12355688888
No 131
>PRK06620 hypothetical protein; Validated
Probab=97.08 E-value=0.0018 Score=57.25 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..+-|+|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999998874
No 132
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.08 E-value=0.00091 Score=57.11 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEE
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWV 245 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv 245 (352)
+..+|.++|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456899999999999999999998 555455444444
No 133
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.08 E-value=0.003 Score=59.78 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=62.3
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcc----cccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc----
Q 018692 200 DLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVK----FYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR---- 271 (352)
Q Consensus 200 ~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~---- 271 (352)
++|..+=..-.+.=|+|.+|+|||+|+.+++-+.... ..-...+||+...+|+.+++.+ +++.++......
T Consensus 117 ~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I 195 (344)
T PLN03187 117 ELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNI 195 (344)
T ss_pred hhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeE
Confidence 3444432345777899999999999998876432222 1124689999999999888655 566665543210
Q ss_pred -cCCCCCHHHHH---HHHHHHcCC-ceEEEEEeCCCC
Q 018692 272 -VIIGEDYQLKK---SILQDYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 272 -~~~~~~~~~l~---~~l~~~L~~-kr~LlVLDdvw~ 303 (352)
.....+.+.+. ..+...+.. +--|||+|.+-.
T Consensus 196 ~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 196 IYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 01223444333 333333433 344899999853
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.07 E-value=0.0015 Score=68.40 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=37.6
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++||+.+.+++++.|.... ..-+.++|.+|+|||++|+.+..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 679999999999999997754 23445899999999999999887
No 135
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.04 E-value=0.004 Score=58.41 Aligned_cols=107 Identities=9% Similarity=-0.015 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR 271 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~ 271 (352)
+.|-++|..+=..-.++-|+|.+|+|||||+..++....... .-...+|++....|+..++ .++++.++......
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~ 161 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDV 161 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHh
Confidence 344444554434578899999999999999998875322211 1235799998888888764 44555554432210
Q ss_pred -----cCCCCCHHHH---HHHHHHHcCC-ceEEEEEeCCCC
Q 018692 272 -----VIIGEDYQLK---KSILQDYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 272 -----~~~~~~~~~l---~~~l~~~L~~-kr~LlVLDdvw~ 303 (352)
.....+.+.+ ...+...+.. +--|||+|.+-.
T Consensus 162 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 162 LDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred hccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 0112233333 3333343433 455999999853
No 136
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.015 Score=58.86 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=87.5
Q ss_pred hhhhHHHHHHHHHHHhhccCCCCCCCCCCCCC-----ccccccCCCC--------CCC-CccccccccHHHHHHHHhc--
Q 018692 141 LHDGLHSEIIDIRNRMQQLPPGDNGFDISEKG-----NKIIRLLSEG--------KPR-LDISEFENSGEKLFDLLIE-- 204 (352)
Q Consensus 141 ~r~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~-----~~~~~~~~~~--------~~~-~~~vGr~~~~~~l~~~L~~-- 204 (352)
....+.+.+.+-..+|+.+......|.+...- +-++...+.- ... .+=+|+++-+++|++.+--
T Consensus 352 ~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~k 431 (906)
T KOG2004|consen 352 MPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGK 431 (906)
T ss_pred CcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHh
Confidence 34455566667777788887777777654321 1111111110 111 6678999999999999964
Q ss_pred --CCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHH
Q 018692 205 --GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKK 282 (352)
Q Consensus 205 --~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~ 282 (352)
+..+-++++.+|++|||||.+|+.|.. .....|- -++|+.-.|+.+| .+.... -...+. ..++
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeI--------kGHRRT-YVGAMP-GkiI 496 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEI--------KGHRRT-YVGAMP-GKII 496 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhh--------ccccee-eeccCC-hHHH
Confidence 345678999999999999999999998 6655552 2345554454332 221110 001111 2333
Q ss_pred HHHHHHcCCceEEEEEeCCCC
Q 018692 283 SILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 283 ~~l~~~L~~kr~LlVLDdvw~ 303 (352)
..|+.. +...-|+.||.|..
T Consensus 497 q~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 497 QCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred HHHHhh-CCCCceEEeehhhh
Confidence 333332 34566888999865
No 137
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.04 E-value=0.0024 Score=59.60 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=65.3
Q ss_pred cccccHHHHHHHHhcCC--CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCC
Q 018692 190 EFENSGEKLFDLLIEGP--SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPP 267 (352)
Q Consensus 190 Gr~~~~~~l~~~L~~~~--~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~ 267 (352)
++....+...+++..-. ...+-+-++|..|+|||.||..+++... +..+. +.++++ ..++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 33334444555554321 1345678999999999999999998422 22233 344533 45666665544211
Q ss_pred CccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHH--HHHhhC-CCC-CCCcEEEecc
Q 018692 268 ARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWD--DLEEVL-PEN-QNGSRVLILS 328 (352)
Q Consensus 268 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~--~l~~~l-~~~-~~gsrIivTT 328 (352)
+.. ..+.. + .+-=||||||+..+ ...|. .+...+ ... ..+-.+|+||
T Consensus 207 ---------~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TS 258 (306)
T PRK08939 207 ---------SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTS 258 (306)
T ss_pred ---------cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 112 22222 2 24559999999764 45564 354443 321 2345588888
No 138
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.03 E-value=0.0054 Score=57.64 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=63.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccccc----ceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc-
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF----DCLAWVRVSMLHDFGKILDDIIKSVMPPARVR- 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~- 271 (352)
.+-+.|...=+.-.++-|+|.+|+|||+|+.+++-+......+ ...+||+...+|+..++.+ +++.++......
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l 168 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVL 168 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhh
Confidence 3334444433346788899999999999999887542222111 4789999999998877654 445444322110
Q ss_pred -c---CCCCC---HHHHHHHHHHHcCC--ceEEEEEeCCCC
Q 018692 272 -V---IIGED---YQLKKSILQDYLTN--KKYFIVLDDVFD 303 (352)
Q Consensus 272 -~---~~~~~---~~~l~~~l~~~L~~--kr~LlVLDdvw~ 303 (352)
. ....+ ...+...+...+.. +--|||+|.+-.
T Consensus 169 ~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 169 DNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 0 01111 12345556666654 344999999843
No 139
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.03 E-value=0.0021 Score=60.57 Aligned_cols=99 Identities=9% Similarity=0.120 Sum_probs=52.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL 289 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (352)
.-+.++|..|+|||.||..+.+. ....-..+++++ ..+++..+...-... ..+.... +.. +
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t------~~~l~~~l~~~~~~~-------~~~~~~~---~~~-l 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRT------ADELIEILREIRFNN-------DKELEEV---YDL-L 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEE------HHHHHHHHHHHHhcc-------chhHHHH---HHH-h
Confidence 66889999999999999999883 322222345553 334444443311100 1111111 222 2
Q ss_pred CCceEEEEEeCCCCC-chhH--HHHHhhCCCC-CCCcEEEecc
Q 018692 290 TNKKYFIVLDDVFDE-SEIW--DDLEEVLPEN-QNGSRVLILS 328 (352)
Q Consensus 290 ~~kr~LlVLDdvw~~-~~~~--~~l~~~l~~~-~~gsrIivTT 328 (352)
. .-=||||||+... ...| ..+...+... ..+..+||||
T Consensus 245 ~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTS 286 (329)
T PRK06835 245 I-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIIST 286 (329)
T ss_pred c-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 2 1238999999653 2223 3344443311 2345588888
No 140
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.011 Score=56.77 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998865
No 141
>PRK06921 hypothetical protein; Provisional
Probab=97.01 E-value=0.0029 Score=57.91 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccc-cceEEEEEe
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFY-FDCLAWVRV 247 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-F~~~~wv~v 247 (352)
...+.++|..|+|||.||..+.+ .+... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 46788999999999999999998 44333 233456543
No 142
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.01 E-value=0.0016 Score=56.91 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=35.0
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEE
Q 018692 189 SEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWV 245 (352)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv 245 (352)
..+..+....++.|.. ..++.+.|.+|.|||.||....-+.-..++|+..+++
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3455666777888873 5588999999999999998876543334778877777
No 143
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.01 E-value=0.0029 Score=62.43 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccc--eEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSIL 285 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l 285 (352)
...-+.|+|..|+|||+|++.+.+ .+...+. ...++ +...+..++...+... ....+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi------~~~~~~~~~~~~~~~~---------~~~~~---- 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYV------TSEKFTNDFVNALRNN---------TMEEF---- 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHcC---------cHHHH----
Confidence 345688999999999999999998 4544432 23444 2334444554444221 12222
Q ss_pred HHHcCCceEEEEEeCCCCC--chhH-HHHHhhCCC-CCCCcEEEecc
Q 018692 286 QDYLTNKKYFIVLDDVFDE--SEIW-DDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 286 ~~~L~~kr~LlVLDdvw~~--~~~~-~~l~~~l~~-~~~gsrIivTT 328 (352)
.+.++ +--+|+|||+... ...+ +.+...+.. ...|..||+||
T Consensus 206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits 251 (450)
T PRK00149 206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTS 251 (450)
T ss_pred HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEEC
Confidence 23333 2338999999542 1111 233332221 12345688887
No 144
>PRK07667 uridine kinase; Provisional
Probab=97.00 E-value=0.0011 Score=57.65 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=32.3
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+.|.+.+.....+..+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677888876666678999999999999999999987
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.00 E-value=0.0016 Score=67.86 Aligned_cols=128 Identities=12% Similarity=0.169 Sum_probs=72.7
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|-++.++.|.+.+... ......+-++|+.|+|||+||+.+.. ..... .+.+..+.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~~---~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGIE---LLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCCC---cEEeechhhcccc----
Confidence 45789899888888888631 22356788999999999999999987 33222 2333333221111
Q ss_pred HHHHhcCCCCccccCCCCCH-HHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCC-----------CCcEEE
Q 018692 259 DIIKSVMPPARVRVIIGEDY-QLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQ-----------NGSRVL 325 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~-----------~gsrIi 325 (352)
.+..-++.+.. ....+. ..+.+.++ +....+++||++... .+.++.+...+..+. ..+-||
T Consensus 529 ~~~~LiG~~~g---yvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 529 TVSRLIGAPPG---YVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred cHHHHcCCCCC---cccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 11111222211 011111 12222222 124569999999875 667777777665321 233478
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
+||
T Consensus 603 ~Ts 605 (758)
T PRK11034 603 MTT 605 (758)
T ss_pred EeC
Confidence 888
No 146
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.98 E-value=0.0018 Score=66.04 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=39.3
Q ss_pred CccccccccHHHHHHHHhcCC---CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGP---SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~---~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|-+..++++..||.... ....++.++|++|+||||+++.+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999997642 2345789999999999999999987
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.98 E-value=0.0017 Score=68.75 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=37.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++||+.++.++++.|.... ..-+-++|.+|+||||+|+.+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 789999999999999998754 23445899999999999999887
No 148
>PRK06696 uridine kinase; Validated
Probab=96.98 E-value=0.0009 Score=59.56 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=33.2
Q ss_pred ccccHHHHHHHHhc-CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 191 FENSGEKLFDLLIE-GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 191 r~~~~~~l~~~L~~-~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
|..-+++|.+.+.. ...+..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45556777777764 344688999999999999999999987
No 149
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.98 E-value=0.0041 Score=64.73 Aligned_cols=47 Identities=19% Similarity=0.053 Sum_probs=37.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|....+..+.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 57999998888888777643223446679999999999999999974
No 150
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.97 E-value=0.0018 Score=56.52 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=57.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH---HHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD---DIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~---~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
+++.|+|..|+||||++..+.. ....+....+++ +..+.. .... .++.+-. ...+.....+.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E--~~~~~~~~~i~q~~--------vg~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIE--FVHESKRSLINQRE--------VGLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCcc--ccccCccceeeecc--------cCCCccCHHHHHH
Confidence 5789999999999999998776 333333334433 222211 0000 0110000 0112234566677
Q ss_pred HHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..|....=.|++|.+.+ .+.+..+..... .|..++.|+
T Consensus 69 ~aLr~~pd~ii~gEird-~e~~~~~l~~a~---~G~~v~~t~ 106 (198)
T cd01131 69 AALRQDPDVILVGEMRD-LETIRLALTAAE---TGHLVMSTL 106 (198)
T ss_pred HHhcCCcCEEEEcCCCC-HHHHHHHHHHHH---cCCEEEEEe
Confidence 77776677999999988 766655444432 344566655
No 151
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.00077 Score=55.08 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=48.3
Q ss_pred EEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCC
Q 018692 212 VAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTN 291 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~ 291 (352)
|-++|.+|+|||+||+.++. .... ...-+.++...+..+++...--. ..... ... ..+...+ .
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~~---~~~---~~l~~a~-----~ 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQFE---FKD---GPLVRAM-----R 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTTC---EEE----CCCTTH-----H
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-ccccc---ccc---ccccccc-----c
Confidence 46899999999999999987 3322 23345777777777665432211 00000 000 0000000 1
Q ss_pred ceEEEEEeCCCCC-chhHHHHHhhC
Q 018692 292 KKYFIVLDDVFDE-SEIWDDLEEVL 315 (352)
Q Consensus 292 kr~LlVLDdvw~~-~~~~~~l~~~l 315 (352)
+..++|||++... ...+..+...+
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHH
T ss_pred ceeEEEECCcccCCHHHHHHHHHHH
Confidence 7899999999742 55555555444
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.01 Score=60.75 Aligned_cols=137 Identities=10% Similarity=-0.023 Sum_probs=72.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|.+...+.|..++..+. -..-+-++|..|+||||+|+.+...--....+.. ....+..-...+.|.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence 789999999999999988653 1245668999999999999998773211110000 0011111112222222111
Q ss_pred CCCcccc-CCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 266 PPARVRV-IIGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 266 ~~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
....... ......+.+.+.+... ..+++-++|+|++... ...++.|...+......+.+|++|
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t 158 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLAT 158 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEe
Confidence 1000000 0111222222222111 1245568999999764 667888888886544456655555
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.91 E-value=0.002 Score=68.42 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=37.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++||+.+..++++.|.... ..-+.++|.+|+|||++|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 679999999999999998764 33345899999999999999887
No 154
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.87 E-value=0.0055 Score=56.84 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=90.4
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcc-CCcccccceEEEEEeCCCCCH-HHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNN-NHVKFYFDCLAWVRVSMLHDF-GKILDDII 261 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~il~~i~ 261 (352)
..++|.+++..++-+||... .....-+.|+|+.|+|||+|.-.+..+ .+..++| .-|...+.... +-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 46999999999999999764 123456679999999999999888775 2344444 33444444333 33566666
Q ss_pred HhcCCCCccccCCCCCHHHHHHHHHHHcC------CceEEEEEeCCCCC------chhHHHHHhhCC-CCCCCcEEEecc
Q 018692 262 KSVMPPARVRVIIGEDYQLKKSILQDYLT------NKKYFIVLDDVFDE------SEIWDDLEEVLP-ENQNGSRVLILS 328 (352)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~------~kr~LlVLDdvw~~------~~~~~~l~~~l~-~~~~gsrIivTT 328 (352)
+|+..+.........+..+....+-..|+ +-+++.|+|...-- .--++ +...-. ...|-|-|-+||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYn-lfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYN-LFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHH-HHHHHhhcCCCeEEEEeec
Confidence 66654433211122333333444444443 23578888876431 11122 222222 245667777888
Q ss_pred ----------hhhhhcCCCCceeecCCChhh
Q 018692 329 ----------KVALHVETPKYLELPLTCLVE 349 (352)
Q Consensus 329 ----------~va~~~~~~~~~~~~l~~L~~ 349 (352)
+|-..++....+..|..+|++
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~ 210 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGD 210 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHH
Confidence 344444444344555555554
No 155
>CHL00176 ftsH cell division protein; Validated
Probab=96.84 E-value=0.0049 Score=63.17 Aligned_cols=93 Identities=14% Similarity=0.202 Sum_probs=54.7
Q ss_pred CccccccccHHHHHHHH---hcCC-------CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHH
Q 018692 186 LDISEFENSGEKLFDLL---IEGP-------SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGK 255 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (352)
.++.|.++.++++.+.+ .... ...+-+-++|++|+|||+||+.+++. ...+ ++.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----H
Confidence 77889777666655543 3321 12445789999999999999999883 2222 2333211 1
Q ss_pred HHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 018692 256 ILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVF 302 (352)
Q Consensus 256 il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw 302 (352)
+.. ... ......+...+........++|+||++.
T Consensus 252 f~~----~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 252 FVE----MFV---------GVGAARVRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred HHH----Hhh---------hhhHHHHHHHHHHHhcCCCcEEEEecch
Confidence 111 000 1112334444555556788999999995
No 156
>PTZ00035 Rad51 protein; Provisional
Probab=96.84 E-value=0.0093 Score=56.47 Aligned_cols=106 Identities=10% Similarity=0.015 Sum_probs=62.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcc----cccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc-
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVK----FYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR- 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~- 271 (352)
.|-++|..+=..-.++-|+|.+|+|||||+..++-..... ..=...+|+.-...|+.+++ .++++.++......
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l 184 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVL 184 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHh
Confidence 3444454443456788999999999999999887533321 11234679988888887774 44555554432110
Q ss_pred ----cCCCCCHHHHHHHH---HHHcC-CceEEEEEeCCCC
Q 018692 272 ----VIIGEDYQLKKSIL---QDYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 272 ----~~~~~~~~~l~~~l---~~~L~-~kr~LlVLDdvw~ 303 (352)
.....+.+.+...+ ...+. .+--|||+|.+..
T Consensus 185 ~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 185 DNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred hceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 01123333443333 33333 3445999999854
No 157
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.013 Score=59.21 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=38.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|-+..++.|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998643 234577999999999999999877
No 158
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.83 E-value=0.0043 Score=56.82 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=77.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEE-EEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAW-VRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~il~~i~~~l 264 (352)
.+++|-+..+.-|.+.+.. ....+.-.+|++|.|||+-|......---.+.|.+++- .++|...... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~----- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE----- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-----
Confidence 7889999999999998887 34778889999999999988887753222455766542 2333332211 0000
Q ss_pred CCCCccccCCCCCHHHHHHHHHHHc--CCceE-EEEEeCCCCC-chhHHHHHhhCCCCCCCcEE-Eecc
Q 018692 265 MPPARVRVIIGEDYQLKKSILQDYL--TNKKY-FIVLDDVFDE-SEIWDDLEEVLPENQNGSRV-LILS 328 (352)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~-LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrI-ivTT 328 (352)
...+...+........ ..+.| .+|||++... .+.|..+...+......++. +||+
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcC
Confidence 0111111111111111 12343 7899999877 88999999988765667774 4555
No 159
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.83 E-value=0.004 Score=58.79 Aligned_cols=46 Identities=15% Similarity=0.000 Sum_probs=37.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|....+.++.+.+..-...-.-|-|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 5689999888888888865333344567999999999999999986
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.80 E-value=0.003 Score=62.77 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=37.1
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++.|.+..+++|.+.+... -...+-+-++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 67888999999988876421 123455779999999999999999983
No 161
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.78 E-value=0.0049 Score=57.77 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHH
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSIL 285 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l 285 (352)
+.-+++-|+|++|+||||||.+++-. ....-...+||...+.++.. .+.+++....... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34568889999999999999987752 22333567888887776653 3444443322100 1223456666666
Q ss_pred HHHcCC-ceEEEEEeCCC
Q 018692 286 QDYLTN-KKYFIVLDDVF 302 (352)
Q Consensus 286 ~~~L~~-kr~LlVLDdvw 302 (352)
...++. .--|+|+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 665544 45699999975
No 162
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.007 Score=53.47 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=54.7
Q ss_pred HHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCC-Ccc-ccCCCC
Q 018692 199 FDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPP-ARV-RVIIGE 276 (352)
Q Consensus 199 ~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~-~~~-~~~~~~ 276 (352)
-+.|..+=..-.++-|.|.+|+|||||+.++... ....=...+|++....+. +-+++++...... ... ......
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 84 (218)
T cd01394 9 DELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPM 84 (218)
T ss_pred HHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCC
Confidence 3334333345678899999999999999998763 222223567787665554 3333443321100 000 001122
Q ss_pred CHHHH---HHHHHHHcCCceEEEEEeCCCC
Q 018692 277 DYQLK---KSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 277 ~~~~l---~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
+..++ ...+...+..+.-++|+|.+-.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 85 DFNEQGRAIQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEechHH
Confidence 22222 3344444554566999999853
No 163
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.77 E-value=0.0014 Score=65.32 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=40.2
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6799999999999999943 234567999999999999999999987
No 164
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.75 E-value=0.012 Score=55.75 Aligned_cols=107 Identities=9% Similarity=0.024 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR 271 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~ 271 (352)
..|-++|..+=..-.++-|+|.+|+|||+|+..++-...... .-...+||+...+|+.+++ .+|++.++......
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~ 188 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADV 188 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhh
Confidence 334444554434567888999999999999988875332221 1236899999999998876 45666665433210
Q ss_pred -----cCCCCCHHHHHHHHH---HHcC-CceEEEEEeCCCC
Q 018692 272 -----VIIGEDYQLKKSILQ---DYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 272 -----~~~~~~~~~l~~~l~---~~L~-~kr~LlVLDdvw~ 303 (352)
.....+.+.+...+. ..+. .+--|||+|.+-.
T Consensus 189 l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 189 LENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred ccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 011233444433332 3333 3555999999853
No 165
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0035 Score=56.95 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQD 287 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (352)
+..-+.++|.+|+|||.||..+.+... +..+. +.++ +..++++++........ ....|.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~~~------------~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDEGR------------LEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhcCc------------hHHHHHH
Confidence 466788999999999999999998433 22233 3333 45566676665544311 1122222
Q ss_pred HcCCceEEEEEeCCCCC
Q 018692 288 YLTNKKYFIVLDDVFDE 304 (352)
Q Consensus 288 ~L~~kr~LlVLDdvw~~ 304 (352)
.+ .+-=||||||+-..
T Consensus 164 ~l-~~~dlLIiDDlG~~ 179 (254)
T COG1484 164 EL-KKVDLLIIDDIGYE 179 (254)
T ss_pred Hh-hcCCEEEEecccCc
Confidence 11 12339999999664
No 166
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.73 E-value=0.0056 Score=49.96 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 167
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.023 Score=57.53 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=37.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+...+.|.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998753 234556799999999999998865
No 168
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.72 E-value=0.0059 Score=57.17 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHH
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSIL 285 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l 285 (352)
+.-+++-|+|.+|+||||||.++... ....=...+||...+.++.. .+++++....... ....+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 44678899999999999999887663 22233457788777766543 3445544322100 1123445566666
Q ss_pred HHHcC-CceEEEEEeCCCC
Q 018692 286 QDYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 286 ~~~L~-~kr~LlVLDdvw~ 303 (352)
...++ +.--++|+|.|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 66554 3556999999853
No 169
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.0093 Score=49.32 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=29.2
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCC
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHD 252 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (352)
++.|+|.+|+||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3679999999999999999773 332335577777766543
No 170
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0014 Score=59.38 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=39.9
Q ss_pred CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE---GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.++-++++-=.+.. ....+..+-++|++|.||||||.-+.+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 8899999988888777754 245688999999999999999999998
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0035 Score=65.36 Aligned_cols=44 Identities=20% Similarity=0.130 Sum_probs=37.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++||+.+++++++.|..... .-+-++|.+|+|||++|+.++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987532 2334799999999999999886
No 172
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.69 E-value=0.0035 Score=66.67 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=37.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++||+.++.++++.|..... ..+.++|.+|+|||++|..+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999987542 3334799999999999998877
No 173
>PRK09354 recA recombinase A; Provisional
Probab=96.68 E-value=0.0076 Score=56.99 Aligned_cols=97 Identities=15% Similarity=0.028 Sum_probs=60.7
Q ss_pred HHHh-cCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCC
Q 018692 200 DLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGED 277 (352)
Q Consensus 200 ~~L~-~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~ 277 (352)
.+|. ..=+.-+++-|+|.+|+|||||+.+++.. ....=...+||...+.++.. .+++++....... ....+
T Consensus 50 ~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~ 122 (349)
T PRK09354 50 IALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDT 122 (349)
T ss_pred HHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCC
Confidence 4444 33234678889999999999999987753 22333567899888877753 3455554322200 11224
Q ss_pred HHHHHHHHHHHcCC-ceEEEEEeCCCC
Q 018692 278 YQLKKSILQDYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 278 ~~~l~~~l~~~L~~-kr~LlVLDdvw~ 303 (352)
.++....+...++. +--|||+|.|-.
T Consensus 123 ~Eq~l~i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 123 GEQALEIADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeChhh
Confidence 55666666666544 556999999853
No 174
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.67 E-value=0.0063 Score=61.03 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=38.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|....++++.+.+..-...-.-|-|.|..|+|||++|+.+++.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 57999999999988888764334456779999999999999999974
No 175
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.66 E-value=0.015 Score=51.65 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=72.5
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIE--GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
..++|.+..++.|++-... ....-.-+-++|..|.||+.|++.+.+ .+....-. -|.|++.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~------------- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE------------- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-------------
Confidence 7899999999988875542 122344566899999999999999988 44444333 2233221
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC--chhHHHHHhhCCCC---CCCcEEEecc
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE--SEIWDDLEEVLPEN---QNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~~~---~~gsrIivTT 328 (352)
+-.+...+.+.|+. ...||.|..||+.=+ ...+..++..+..+ .|...++..|
T Consensus 123 ----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 ----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred ----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 01112222333332 358999999999643 67788888888633 3445556555
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.019 Score=54.21 Aligned_cols=151 Identities=9% Similarity=-0.028 Sum_probs=74.9
Q ss_pred Ccccc-ccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISE-FENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vG-r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
..++| -+...+.+.+.+..+. -....-++|+.|+||||+|+.+.+.--..+..... ..... ...+.+..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~-- 74 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDS-- 74 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhc--
Confidence 34666 5556677777766542 34556799999999999998875521111100000 00000 00000000
Q ss_pred CCCCcc-----ccCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hh
Q 018692 265 MPPARV-----RVIIGEDYQLKKSILQDY----LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KV 330 (352)
Q Consensus 265 ~~~~~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~v 330 (352)
+..++ +.......+++.+.+... ..+++=++|+|++... ....+.+...+..-.+++.+|++| .+
T Consensus 75 -~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 75 -GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred -CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000111222332222211 2345557899998664 566778888887666678777777 33
Q ss_pred hhhcCCCCceeecCCChh
Q 018692 331 ALHVETPKYLELPLTCLV 348 (352)
Q Consensus 331 a~~~~~~~~~~~~l~~L~ 348 (352)
.....+.. ..+++.+++
T Consensus 154 l~TIrSRc-~~i~~~~~~ 170 (329)
T PRK08058 154 LPTILSRC-QVVEFRPLP 170 (329)
T ss_pred cHHHHhhc-eeeeCCCCC
Confidence 33333322 245666654
No 177
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.64 E-value=0.0092 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 206 PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 206 ~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+..+++|.|..|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999886
No 178
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.64 E-value=0.0075 Score=55.15 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCcCChHHHHHHHHHHHHHHHhHH
Q 018692 35 LFQNLLTEFEIITTTLLGNYEADMARHLIQLIRQEFDESKMSLPFLQLLDLE-ESDEEDVKRPEILEILEDINDFVYESE 113 (352)
Q Consensus 35 v~~~l~~~~~~~~s~ll~~~~~~~~~~~~~~l~~L~~~L~~i~~~l~~a~~~-~~~~~~~~~~~v~~Wl~~lr~~ayd~e 113 (352)
...-|++.+..+...+.+ .+.-++.+++-++.+|+++|.||+..-.. .... +....+..++...||++|
T Consensus 297 yVdFlL~NLkdfq~rysd-----SlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh-----~~~ed~a~~ii~kAyevE 366 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSD-----SLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKH-----DTNEDCATQIIRKAYEVE 366 (402)
T ss_pred HHHHHHhhHHHHhccccc-----hHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhh-----hhhhhHHHHHHHHHhhee
Confidence 345566666555555554 45568899999999999999999998554 4444 558999999999999999
Q ss_pred HHHHHhHHhhhcccccCCccccccchhhhhhHHHHHHHHHHHhh
Q 018692 114 EAIDTFFINIMQQQTSENESESSTNMALHDGLHSEIIDIRNRMQ 157 (352)
Q Consensus 114 D~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~l~~~l~ 157 (352)
+++|-+..+... .|. .......+...|..++++++
T Consensus 367 YVVDaCi~k~~P------~Wc---l~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 367 YVVDACISKSVP------HWC---LERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred eeeehhhcCCCc------HHH---HHHHHHHHHHHHHHHHHHhc
Confidence 999998544321 010 23344667777777777765
No 179
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.64 E-value=0.0076 Score=60.93 Aligned_cols=98 Identities=12% Similarity=0.173 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccccc--ceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
...+.|+|..|+|||.|++.+++ .....+ -.+.++ +..+++.++...+... ..+ .++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yi------taeef~~el~~al~~~---------~~~----~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYV------SSEEFTNEFINSIRDG---------KGD----SFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEe------eHHHHHHHHHHHHHhc---------cHH----HHH
Confidence 34588999999999999999998 443322 123444 3455555555443221 112 223
Q ss_pred HHcCCceEEEEEeCCCCC--chhHH-HHHhhCCC-CCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDE--SEIWD-DLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~--~~~~~-~l~~~l~~-~~~gsrIivTT 328 (352)
+.+.. -=+|+|||+... .+.|. .+...+.. ...|..||+||
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITS 417 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSS 417 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 33332 248899999652 23332 22222221 12356688888
No 180
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.62 E-value=0.012 Score=55.00 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=62.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc---
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV--- 270 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~--- 270 (352)
+-++|...=..-.++-|+|.+|+|||||+.+++-+..... .=...+||+...+|+.+++. +++..++.....
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~ 162 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLK 162 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhh
Confidence 3344444323467888999999999999998876433211 11268999999989887754 445554433211
Q ss_pred -cc----CCCCCHHHHHHHHHHHcCCc---eEEEEEeCCCC
Q 018692 271 -RV----IIGEDYQLKKSILQDYLTNK---KYFIVLDDVFD 303 (352)
Q Consensus 271 -~~----~~~~~~~~l~~~l~~~L~~k---r~LlVLDdvw~ 303 (352)
.. ........+.+.+.+.+... --+||+|.+-.
T Consensus 163 ~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 163 NIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 00 01111122344555555432 34999999854
No 181
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.60 E-value=0.0059 Score=61.64 Aligned_cols=47 Identities=17% Similarity=-0.025 Sum_probs=38.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 78999999999999888653233445669999999999999999974
No 182
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.59 E-value=0.0063 Score=57.03 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.2
Q ss_pred cccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHH
Q 018692 190 EFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADT 229 (352)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v 229 (352)
+|..+..--+++|.+++ +..+++.|.+|.|||.||-..
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence 36666667778888866 999999999999999988654
No 183
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0055 Score=53.79 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFY 238 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~ 238 (352)
.++.+|+|.|.+|+||||+|+.++. ..+.+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 3468999999999999999999998 44433
No 184
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0019 Score=53.72 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccc-cce
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFY-FDC 241 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-F~~ 241 (352)
..-|.|.||+|+||||+++.+.+ ..++. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 45688999999999999999998 44443 654
No 185
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.57 E-value=0.011 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458899999999999999999873
No 186
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.018 Score=52.78 Aligned_cols=100 Identities=15% Similarity=0.002 Sum_probs=62.6
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh-cCCCCccccCCCCCHH
Q 018692 201 LLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS-VMPPARVRVIIGEDYQ 279 (352)
Q Consensus 201 ~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~-l~~~~~~~~~~~~~~~ 279 (352)
.|...=+.-+++=|+|+.|+||||+|.+++- .....-...+||..-+.+++..+.. +... +..-.-..........
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~ 128 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQL 128 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHH
Confidence 3333334567889999999999999999876 3333344889999999999876533 3333 1111000001233334
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC
Q 018692 280 LKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
.+...+......+--|+|+|.|-.
T Consensus 129 ~i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 129 EIAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHHHHhccCCCCEEEEecCcc
Confidence 445555555555567999999865
No 187
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.54 E-value=0.011 Score=54.54 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=44.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcc-cccceEEEEEeCCCCC--HHHHHHHHHHhcCCCCccccCCCCCHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAWVRVSMLHD--FGKILDDIIKSVMPPARVRVIIGEDYQLKKSI 284 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~--~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~ 284 (352)
+.+++.++|.+|+||||++..+......+ ..+ .+..|+.. ++. ...-+......++.... ...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~ 266 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVK----VARDPKELRKA 266 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHH
Confidence 45799999999999999998887632212 112 23444433 222 22333333333333221 22344555555
Q ss_pred HHHHcCCceEEEEEeC
Q 018692 285 LQDYLTNKKYFIVLDD 300 (352)
Q Consensus 285 l~~~L~~kr~LlVLDd 300 (352)
+... .+ .=+|++|.
T Consensus 267 l~~~-~~-~d~vliDt 280 (282)
T TIGR03499 267 LDRL-RD-KDLILIDT 280 (282)
T ss_pred HHHc-cC-CCEEEEeC
Confidence 5443 33 33677775
No 188
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.033 Score=52.53 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=28.2
Q ss_pred CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 291 NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 291 ~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
+++-++|+|++... ....+.+...+..-..++.+|+||
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 34445677999875 778888888887655678888888
No 189
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.52 E-value=0.0065 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+.+||+.|+||||.+-.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH
Confidence 47899999999999987776665
No 190
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.50 E-value=0.01 Score=56.00 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=33.3
Q ss_pred cccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 188 ISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
++|....+.++.+.+..-...-.-|-|.|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 367666777777777643233445679999999999999999873
No 191
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.50 E-value=0.002 Score=56.03 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 192
>PRK10867 signal recognition particle protein; Provisional
Probab=96.49 E-value=0.019 Score=56.15 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.++|.+|+||||.+..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999996666543
No 193
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.49 E-value=0.037 Score=54.04 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++.++|.+|+||||.+..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999777655
No 194
>PTZ00301 uridine kinase; Provisional
Probab=96.48 E-value=0.0029 Score=55.74 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57899999999999999998765
No 195
>PRK08233 hypothetical protein; Provisional
Probab=96.48 E-value=0.0024 Score=54.48 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999873
No 196
>PRK14974 cell division protein FtsY; Provisional
Probab=96.47 E-value=0.036 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+..+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997777765
No 197
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.47 E-value=0.024 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988875
No 198
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.46 E-value=0.0034 Score=61.34 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=39.5
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.++.|.+..+++|.+.+... -....-+.++|.+|+|||++|+.+++ .....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 67889999999888877421 02344567899999999999999998 444444
No 199
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.45 E-value=0.0026 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+..+|+|.|.+|+|||||++.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999873
No 200
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.43 E-value=0.0023 Score=51.06 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
|.|.|..|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 201
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.40 E-value=0.021 Score=48.91 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC-Cc--cc---ccc--eEEEEEeCCCCCHHHHHHHHHHhcCCCCc--cccCC--CC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN-HV--KF---YFD--CLAWVRVSMLHDFGKILDDIIKSVMPPAR--VRVII--GE 276 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~il~~i~~~l~~~~~--~~~~~--~~ 276 (352)
-.+++|+|..|+|||||.+.+..+. .+ .. .|. ...| +.+ .+.+..++.... ..... +.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4588999999999999999986321 11 11 111 1223 222 345555554321 10011 12
Q ss_pred CHHHHHHHHHHHcCCc--eEEEEEeCCCCC--chhHHHHHhhCCC-CCCCcEEEecc
Q 018692 277 DYQLKKSILQDYLTNK--KYFIVLDDVFDE--SEIWDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 277 ~~~~l~~~l~~~L~~k--r~LlVLDdvw~~--~~~~~~l~~~l~~-~~~gsrIivTT 328 (352)
...+.. .+...+-.+ .=+++||..-.. ......+...+.. ...|..||++|
T Consensus 91 Gq~qrl-~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 91 GELQRV-KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred HHHHHH-HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 223333 344444455 668888987553 3333444433332 12366688888
No 202
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.40 E-value=0.026 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.+++.++|.+|+||||++..+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998888765
No 203
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.39 E-value=0.01 Score=59.27 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=34.2
Q ss_pred CccccccccHHHHHHHHh---cC-------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLI---EG-------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..++++.+++. .. ....+-+-++|++|+|||+||+.+.+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 788998877766655443 21 122344678999999999999999983
No 204
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.37 E-value=0.0033 Score=55.26 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.-.+|+|+|.+|+|||||++.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0076 Score=59.93 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=65.6
Q ss_pred CCCccccccccHHHHHHHHhcC---C-------CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCH
Q 018692 184 PRLDISEFENSGEKLFDLLIEG---P-------SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDF 253 (352)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~---~-------~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (352)
.+.++-|.+....++.+++..- + ...+=+-+.|++|+|||.||+.+.+ +..-.| +.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch---
Confidence 3478889999999888887641 1 1344456899999999999999999 444444 222221
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 254 GKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 254 ~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
+|+.+. .+++++.+.+.+...-..-.|++.+|++.-
T Consensus 258 -----eivSGv---------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 -----EIVSGV---------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -----hhhccc---------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233332 334556666666777677899999999854
No 206
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.35 E-value=0.022 Score=53.37 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHHccCCcc--ccc---ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 193 NSGEKLFDLLIEGP-SGLSVVAILDSSGFDKTAFAADTYNNNHVK--FYF---DCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 193 ~~~~~l~~~L~~~~-~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~--~~F---~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.-.+.|.+.+...+ ....+|+|.|.=|+||||+.+.+.+.-+-. ..+ ..-.|-.-...--...++.+|..++.
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 34567778777653 568999999999999999999998742222 111 22344444433234455555555544
No 207
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.018 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998875
No 208
>PRK06547 hypothetical protein; Provisional
Probab=96.35 E-value=0.0056 Score=52.19 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+...+.. ....+|.|.|.+|+||||+|+.+.+.
T Consensus 6 ~~~~~~~--~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCG--GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 45889999999999999999999874
No 209
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.35 E-value=0.014 Score=51.85 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|+|.|.+|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 210
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.34 E-value=0.012 Score=51.31 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCC
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIG 275 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~ 275 (352)
.+.+..+..+. -++..|.|.+|+||||+.+.+.. ..... ...+.+.....-.... +....+.....
T Consensus 7 ~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~--~~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~a~T----- 72 (196)
T PF13604_consen 7 REAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAE--ALEAA-GKRVIGLAPTNKAAKE----LREKTGIEAQT----- 72 (196)
T ss_dssp HHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHH--HHHHT-T--EEEEESSHHHHHH----HHHHHTS-EEE-----
T ss_pred HHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHH--HHHhC-CCeEEEECCcHHHHHH----HHHhhCcchhh-----
Confidence 33444443322 35778899999999999998876 22222 1233333332222222 33333322111
Q ss_pred CCHHHHHHHHHHHc------CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 276 EDYQLKKSILQDYL------TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 276 ~~~~~l~~~l~~~L------~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...+.......- ..+.-+||+|+.... ...+..+....+. .|+|+|+.=
T Consensus 73 --i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 73 --IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp --HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred --HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 010000000000 123348999998764 5567777777754 477887654
No 211
>PRK04296 thymidine kinase; Provisional
Probab=96.33 E-value=0.0083 Score=52.00 Aligned_cols=110 Identities=12% Similarity=-0.052 Sum_probs=57.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL 289 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (352)
.++-|+|..|.||||++..... +...+-..+..+ ...++.......++++++..... .......++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEE--eccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh-h
Confidence 4667899999999999988876 333232223323 12222222233455555533221 011234455555555 3
Q ss_pred CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 290 TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 290 ~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.++.-+||+|.+.-- .++...+...+. ..|..||+|.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tg 113 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYG 113 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEe
Confidence 334458999998541 232333444432 3466677766
No 212
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.32 E-value=0.058 Score=52.84 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCC------CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGP------SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~------~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|++.|.... ....+|.++|.+|+||||.+..+..
T Consensus 75 ~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 75 YEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred HHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 345555554321 3478999999999999999998876
No 213
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.022 Score=53.46 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=82.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccC---Cc----------ccccceEEEEEeCCCCC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN---HV----------KFYFDCLAWVRVSMLHD 252 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~---~~----------~~~F~~~~wv~vs~~~~ 252 (352)
.+++|.+..++.+.+.+..+. -....-++|..|+||+++|..+...- .. ...++...|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 578899999999999987753 23677889999999999887765421 10 11122234442110000
Q ss_pred HHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEe
Q 018692 253 FGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL-----TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLI 326 (352)
Q Consensus 253 ~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIiv 326 (352)
-..+-..-+...+..... ......++ ...+.+.+ .+++-++|+|++... ....+.+...+-.-. .+.+|+
T Consensus 83 g~~~~~~~~~~~~~~~~~--~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 83 GKLITASEAEEAGLKRKA--PPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred ccccchhhhhhccccccc--cccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 000000001111100000 01112222 22333333 356678999998764 667788888876544 456666
Q ss_pred cc----hhhhhcCCCCceeecCCChhh
Q 018692 327 LS----KVALHVETPKYLELPLTCLVE 349 (352)
Q Consensus 327 TT----~va~~~~~~~~~~~~l~~L~~ 349 (352)
+| .+-....+.. ..+++.++++
T Consensus 159 i~~~~~~Ll~TI~SRc-q~i~f~~l~~ 184 (314)
T PRK07399 159 IAPSPESLLPTIVSRC-QIIPFYRLSD 184 (314)
T ss_pred EECChHhCcHHHHhhc-eEEecCCCCH
Confidence 65 3333333332 3567776643
No 214
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.31 E-value=0.024 Score=58.57 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=36.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|....+.++++.+..-...-.-|-|.|..|+||+++|+.+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 67899888888888877643222334669999999999999999873
No 215
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.22 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|.+|+||||++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988765
No 216
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.22 E-value=0.0061 Score=49.82 Aligned_cols=44 Identities=18% Similarity=0.023 Sum_probs=30.1
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 189 SEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
||.-..++++.+.+..=.....-|-|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 45555666666666542223455679999999999999999884
No 217
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.22 E-value=0.22 Score=49.99 Aligned_cols=53 Identities=21% Similarity=0.151 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHhhhhcccceeechhhhchhHHHHHHHHHHHHHHhhhhhhhH
Q 018692 2 LDVHLRLFCERLKRVLAGEEGTLTLTDSTNLAPLFQNLLTEFEIITTTLLGNYE 55 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~l~~v~~~l~~~~~~~~s~ll~~~~ 55 (352)
||.--..+.|....-..| .+.+.-=.-.||..|.+.++..-..-+..|-|+|.
T Consensus 184 LD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 184 LDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred cCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 555556667777777777 56666777888888888875443333456667765
No 218
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.21 E-value=0.026 Score=48.34 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEE---EeCCCCCHHHHH------HHHHHhcCCCCcc-ccCC-CCC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWV---RVSMLHDFGKIL------DDIIKSVMPPARV-RVII-GED 277 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~il------~~i~~~l~~~~~~-~~~~-~~~ 277 (352)
-.+++|+|..|+|||||.+.++.- .. .....+++ .+. ..+..... -++++.++..... .... -+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~~-~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--LK-PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 458999999999999999999873 21 22223332 121 11222211 1134444432110 0011 112
Q ss_pred HHHHHHHHHHHcCCceEEEEEeCCCCC--chhHHHHHhhCCCC-CC-CcEEEecc
Q 018692 278 YQLKKSILQDYLTNKKYFIVLDDVFDE--SEIWDDLEEVLPEN-QN-GSRVLILS 328 (352)
Q Consensus 278 ~~~l~~~l~~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~~~-~~-gsrIivTT 328 (352)
-+...-.+...+-...-+++||..-.. ....+.+...+..- .. |.-||++|
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 155 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL 155 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 223333455566667788999998653 33344444444321 12 66788888
No 219
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.20 E-value=0.0074 Score=53.70 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=30.0
Q ss_pred Cccc-cccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDIS-EFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~v-Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
++++ |..+.....+..+.........+.|+|..|+|||+||+.+++.
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5555 4444333333333222223457789999999999999999883
No 220
>PRK06762 hypothetical protein; Provisional
Probab=96.19 E-value=0.0042 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999987
No 221
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.18 E-value=0.0038 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.364 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.17 E-value=0.024 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999987
No 223
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.15 E-value=0.035 Score=45.74 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468899999999999999999873
No 224
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.11 E-value=0.029 Score=50.21 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=60.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-------
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV------- 270 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~------- 270 (352)
|-+.|..+=+.-.++.|.|.+|+|||+|+.++... ..+. =..++|++..++ ...+++++. +++-...+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l 88 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYL 88 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCc
Confidence 33444444345678899999999999999998432 1222 235788888664 455655542 33321110
Q ss_pred ---------ccCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCC
Q 018692 271 ---------RVIIGEDYQLKKSILQDYLTN-KKYFIVLDDVF 302 (352)
Q Consensus 271 ---------~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw 302 (352)
......+.+.+...+...+.. +.-++|+|.+-
T Consensus 89 ~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 89 RIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 001123446777777777764 55589999975
No 225
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.11 E-value=0.02 Score=52.28 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCc--ccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCccc--cCCCC-CHH---
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHV--KFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARVR--VIIGE-DYQ--- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~~~--- 279 (352)
=.-++|.|-.|+|||+|+..+.++..+ +.+-+.++++-+.+.. .+.++..++...-.....-. ...++ ...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 346789999999999999998875431 2335678888888765 45677777665422211110 01111 111
Q ss_pred --HHHHHHHHHc---CCceEEEEEeCCCC
Q 018692 280 --LKKSILQDYL---TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 --~l~~~l~~~L---~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ ++++.|+++||+-.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1222345555 26899999999855
No 226
>PRK03839 putative kinase; Provisional
Probab=96.11 E-value=0.0042 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999883
No 227
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.023 Score=54.75 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQD 287 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 287 (352)
....+-|+|..|.|||-|++.+.+ ....+......++++ .+....+++..+.. .-.+.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~-------------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD-------------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh-------------hhHHHHHH
Confidence 477899999999999999999999 666666543334443 23344444433322 11233444
Q ss_pred HcCCceEEEEEeCCCCC--ch----hHHHHHhhCCCCCCCcEEEecc
Q 018692 288 YLTNKKYFIVLDDVFDE--SE----IWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 288 ~L~~kr~LlVLDdvw~~--~~----~~~~l~~~l~~~~~gsrIivTT 328 (352)
.. .-=++++||++-- .+ .+-.+...+.. .|..||+|+
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvlts 215 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTS 215 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEc
Confidence 44 2338899998651 22 22233334433 244899888
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.09 E-value=0.01 Score=62.27 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=36.8
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+++.|.+..+++|.+.+... -...+-+.++|.+|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 77899999999988877421 01235577999999999999999998
No 229
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.09 E-value=0.034 Score=50.95 Aligned_cols=126 Identities=16% Similarity=0.044 Sum_probs=66.0
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc---
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV--- 270 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~--- 270 (352)
..+.++..|... ....-++|+|..|+|||||.+.+.. .+... ...+++.- ......+-..++......-...
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~--~~~~~-~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLAR--ILSTG-ISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhC--ccCCC-CceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence 455666666643 2357889999999999999999987 33221 12222210 0000001112333222211110
Q ss_pred ccCCCCCHHHHHHHHHHHcC-CceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 271 RVIIGEDYQLKKSILQDYLT-NKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 271 ~~~~~~~~~~l~~~l~~~L~-~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...+..+...-...+...+. ...-++++|.+-. .+.+..+...+. .|..||+||
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~tt 226 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATA 226 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEe
Confidence 00011111111222233332 4778999999988 777777776663 377799999
No 230
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.07 E-value=0.046 Score=46.19 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCc-ccc--cce---EEEEEeCCCCCH--HHHHHHHHHhcCCCCccccCCCCCHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHV-KFY--FDC---LAWVRVSMLHDF--GKILDDIIKSVMPPARVRVIIGEDYQL 280 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~~--F~~---~~wv~vs~~~~~--~~il~~i~~~l~~~~~~~~~~~~~~~~ 280 (352)
-.+++|+|..|+|||||++.+..-... ... |+. .. .+.+.+.. ..+.+.+... ... .-+..+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~--~~~q~~~~~~~tv~~nl~~~---~~~---~LS~G~~- 97 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLL--FLPQRPYLPLGTLREQLIYP---WDD---VLSGGEQ- 97 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEE--EECCCCccccccHHHHhhcc---CCC---CCCHHHH-
Confidence 458899999999999999999874211 111 111 22 23333211 2344444321 111 0122223
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCC--chhHHHHHhhCCCCCCCcEEEecc
Q 018692 281 KKSILQDYLTNKKYFIVLDDVFDE--SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 281 l~~~l~~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..-.+.+.+-.+.=+++||.--.. ......+...+... +..||++|
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivs 145 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVG 145 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEe
Confidence 333445555566678889987552 33333343444322 35577777
No 231
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.06 E-value=0.029 Score=54.89 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|++|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999864
No 232
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.06 E-value=0.0053 Score=52.64 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+..+|.|+|.+|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 233
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.055 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.++.++|+.|+||||++..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 234
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.03 E-value=0.02 Score=48.30 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeC--CCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVS--MLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
-.+++|+|..|+|||||.+.+..-. ......+++.-. ...+..+..+ +.++... .-+.. +...-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~----qLS~G-~~qrl~la 94 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY----QLSVG-ERQMVEIA 94 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE----ecCHH-HHHHHHHH
Confidence 4588999999999999999998732 222333433211 1111111111 1111100 01112 23333455
Q ss_pred HHcCCceEEEEEeCCCCC--chhHHHHHhhCCC-CCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDE--SEIWDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~~-~~~gsrIivTT 328 (352)
+.+-.+.-+++||+.-.. ......+...+.. ...|.-||++|
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 139 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFIS 139 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 555566778899998653 3333444444331 12356677777
No 235
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.02 E-value=0.083 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-+++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999998877754
No 236
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.02 E-value=0.021 Score=55.64 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCCC-HH----
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGED-YQ---- 279 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~~-~~---- 279 (352)
.-..++|+|..|+|||||++.+++... -+..+.+-+.+.. .+.++..+.+..-+..... ....+.. ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999987432 1344556666554 3445555444432211110 0011111 11
Q ss_pred -HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 -LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 -~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ +++..|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122344444 58999999999954
No 237
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.00 E-value=0.023 Score=55.24 Aligned_cols=91 Identities=10% Similarity=0.145 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCCCH-H-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGEDY-Q----- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~~~-~----- 279 (352)
-..++|+|..|+|||||++.+.... . .+..+.+-+.+.. .+.++..+++..-+....- ....++.. .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~--~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT--T--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC--C--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998632 1 2455556666654 3455666654432211110 00111111 1
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ ++++.|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1122244444 58999999999854
No 238
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.00 E-value=0.033 Score=52.15 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQ 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 286 (352)
.-+++-|+|..|+||||||..+.. .....-...+||.....++... +.+++.....-. ......++..+...
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 456899999999999999998887 3444445689999988887643 455555443211 11233455666666
Q ss_pred HHcCC-ceEEEEEeCCCC
Q 018692 287 DYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 287 ~~L~~-kr~LlVLDdvw~ 303 (352)
..++. .--++|+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 66654 445999999865
No 239
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.12 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+++.++|..|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988775
No 240
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.97 E-value=0.0065 Score=53.36 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 201 LLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 201 ~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
|+..+....+.|.|+|.+|+|||||++.+.+
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4555566788999999999999999999976
No 241
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.02 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999984
No 242
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.93 E-value=0.027 Score=56.70 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=35.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|....+.++++.+..-...-.-|-|+|..|+||+++|+.++.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 7899998888888887753211223466999999999999999876
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.92 E-value=0.056 Score=48.91 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=67.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEE-----EeCCCCCHHHHHHHHHHhcCCCCccc---cCCCCCHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWV-----RVSMLHDFGKILDDIIKSVMPPARVR---VIIGEDYQ 279 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv-----~vs~~~~~~~il~~i~~~l~~~~~~~---~~~~~~~~ 279 (352)
.-.++++||..|+|||||++.+.. -.+-....+.|- ..+ .....+-..+++...+.....- ...-+.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 356899999999999999999986 222222222221 111 2223345566666666433210 01112222
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCCC-----chhHHHHHhhCCCCCCCcEEEecc--hhhhhcCC
Q 018692 280 LKKSILQDYLTNKKYFIVLDDVFDE-----SEIWDDLEEVLPENQNGSRVLILS--KVALHVET 336 (352)
Q Consensus 280 ~l~~~l~~~L~~kr~LlVLDdvw~~-----~~~~~~l~~~l~~~~~gsrIivTT--~va~~~~~ 336 (352)
.-.-.+.+.|.-+.=|+|.|..-+. ..+.-.+..-+.....=+.+.||= .|+..++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2334567777888899999987652 122223333343322234444444 66666654
No 244
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.053 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45889999999999999999987
No 245
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.92 E-value=0.005 Score=53.60 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|+|.|.+|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 246
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.91 E-value=0.041 Score=50.90 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987644
No 247
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.01 Score=49.39 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=32.6
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPA 268 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~ 268 (352)
+|.|-|.+|+||||+|+.+.++-..+ | + +...++++|++.-+..-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-------v----saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-------V----SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-------e----eccHHHHHHHHHcCCCH
Confidence 78999999999999999998843222 1 1 33467788887766543
No 248
>PRK04040 adenylate kinase; Provisional
Probab=95.88 E-value=0.0069 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 249
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.88 E-value=0.028 Score=51.29 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCccHHHHH-HHHHccCCcccccceE-EEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCCCH-----
Q 018692 209 LSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDCL-AWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGEDY----- 278 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~~~----- 278 (352)
=.-++|.|..|+|||+|| ..+.+. . +-+.. +++-+.+.. .+.++.+++...-...... ....++..
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356789999999999996 666652 2 22343 666666654 4566666666532211110 00111111
Q ss_pred -----HHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHH
Q 018692 279 -----QLKKSILQDYLTNKKYFIVLDDVFDESEIWDDLE 312 (352)
Q Consensus 279 -----~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~ 312 (352)
-..++.++. +++..|+++||+-.....|.++.
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHH
Confidence 223344444 57999999999965234444444
No 250
>PRK14527 adenylate kinase; Provisional
Probab=95.88 E-value=0.02 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|+|.+|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999886
No 251
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.85 E-value=0.035 Score=57.85 Aligned_cols=99 Identities=17% Similarity=0.060 Sum_probs=62.4
Q ss_pred HHHHHHh-cCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CC
Q 018692 197 KLFDLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-II 274 (352)
Q Consensus 197 ~l~~~L~-~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~ 274 (352)
.|-.+|. ..=+.-+++-|.|.+|+|||||+.+++.. ....=...+|+...+.++. ..+++++....... ..
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEec
Confidence 3444454 33234678889999999999999776542 1122245789988887774 36667766543211 12
Q ss_pred CCCHHHHHHHHHHHcCC-ceEEEEEeCCC
Q 018692 275 GEDYQLKKSILQDYLTN-KKYFIVLDDVF 302 (352)
Q Consensus 275 ~~~~~~l~~~l~~~L~~-kr~LlVLDdvw 302 (352)
....+.....+...+.. +--|||+|.+-
T Consensus 120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 120 PDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 23445566667666654 45589999985
No 252
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.84 E-value=0.021 Score=56.05 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCccc--cCCCCCH------H
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARVR--VIIGEDY------Q 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~~~------~ 279 (352)
=.-++|.|.+|+|||||+..+..+.. +.+-+.++++-+.+.. .+.++..++...-....... ...+.+. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 45788999999999999988877432 2355777888777654 45666666654322211110 0111111 1
Q ss_pred HHHHHHHHHc---CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL---TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L---~~kr~LlVLDdvw~ 303 (352)
.....+.+++ ++++.|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2233455555 37999999999943
No 253
>PRK08149 ATP synthase SpaL; Validated
Probab=95.81 E-value=0.032 Score=54.31 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCccc--cCCCCCH------H
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML-HDFGKILDDIIKSVMPPARVR--VIIGEDY------Q 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~~~------~ 279 (352)
-..++|+|..|+|||||.+.+++.... +..+...+... -++.++..+............ ...+... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 457899999999999999999874322 23333334433 355666666665432211110 0111111 1
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
.....+.+++ ++|+.||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 2223344444 58999999999854
No 254
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.80 E-value=0.012 Score=47.78 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=28.7
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
+.+++.+.|...-..-.+|.+.|.-|+|||||++.+...-
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444555554332335689999999999999999999843
No 255
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.80 E-value=0.0074 Score=51.52 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 256
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.79 E-value=0.069 Score=51.13 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=24.9
Q ss_pred HHHHHHHHhcC--CCCceEEEEEcCCCccHH-HHHHHHHc
Q 018692 195 GEKLFDLLIEG--PSGLSVVAILDSSGFDKT-AFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~--~~~~~vi~IvG~gGvGKT-tLA~~v~~ 231 (352)
...+..++..+ -.+-++|++||+.||||| |||+..+.
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHH
Confidence 33444444433 124789999999999998 67776554
No 257
>PRK00625 shikimate kinase; Provisional
Probab=95.79 E-value=0.0067 Score=51.78 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 258
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.77 E-value=0.051 Score=53.14 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-ccCCCC-CH-----HHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV-RVIIGE-DY-----QLK 281 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~-~~~~~~-~~-----~~l 281 (352)
-..++|+|..|+|||||++.+..... .....++..-...-++.++....+.......-. ....+. .. ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45789999999999999998876321 222344443323445555544444432110000 001111 11 111
Q ss_pred HHHHHHHc--CCceEEEEEeCCCC
Q 018692 282 KSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 282 ~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
.-.+.+++ +++..|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 22233443 47999999999854
No 259
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.77 E-value=0.021 Score=56.21 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=36.3
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 187 DISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|+++.++.+...+..+. -+-+.|.+|+|||+||+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 58999999999999998654 566899999999999999987
No 260
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.76 E-value=0.11 Score=52.69 Aligned_cols=135 Identities=16% Similarity=0.084 Sum_probs=87.1
Q ss_pred CccccccccHHHHHHHHhcC--C-CCceEEEEEcCCCccHHHHHHHHHccCC------cccccceEEEEEeCCCCCHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG--P-SGLSVVAILDSSGFDKTAFAADTYNNNH------VKFYFDCLAWVRVSMLHDFGKI 256 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~-~~~~vi~IvG~gGvGKTtLA~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~i 256 (352)
..+-+|+.+..+|-..+..- + ..-+.+-|.|-+|+|||..+..|.+.-. --..|+ .+.|..-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 45667999999999988642 2 2344788999999999999999987321 112343 233444444568899
Q ss_pred HHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcC-----CceEEEEEeCCCCC-chhHHHHHhhCCC-CCCCcEEEecc
Q 018692 257 LDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLT-----NKKYFIVLDDVFDE-SEIWDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 257 l~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVLDdvw~~-~~~~~~l~~~l~~-~~~gsrIivTT 328 (352)
...|...+.+... ....-++.|..++. .+..++++|.+... ...=+-+-..|.+ ..++||++|-+
T Consensus 475 Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 475 YEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 9999999988754 22334455555553 35789999987541 1111223334432 46789987766
No 261
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.76 E-value=0.008 Score=50.73 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999999988
No 262
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.75 E-value=0.021 Score=54.20 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.....+.|+|++|+|||.+|+.+++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 3578899999999999999999999 444443
No 263
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.74 E-value=0.024 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 264
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.74 E-value=0.044 Score=53.44 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCCCHHH----
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGEDYQL---- 280 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~~~~~---- 280 (352)
+-..++|.|..|+|||||.+.+++... -+..+.+-+.+.. .+.++....+..-+..... ....++....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999999998432 2467777777664 3344444433221111100 0011111111
Q ss_pred --HHHHHHHHc--CCceEEEEEeCCCC
Q 018692 281 --KKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 281 --l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
....+.+++ ++|+.|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112234444 58999999999854
No 265
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.73 E-value=0.032 Score=58.60 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=37.8
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.++.|.+..++.|.+.+.-. -...+-+-++|++|+|||+||+.+.+ ....+|
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f 515 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF 515 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE
Confidence 67888888888877766421 12234577899999999999999998 444443
No 266
>PHA00729 NTP-binding motif containing protein
Probab=95.73 E-value=0.015 Score=51.57 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++++.+...+ ...|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 4555555433 55788999999999999999987
No 267
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.053 Score=53.37 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=38.5
Q ss_pred Cccccccc---cHHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHHccCCc
Q 018692 186 LDISEFEN---SGEKLFDLLIEGP-------SGLSVVAILDSSGFDKTAFAADTYNNNHV 235 (352)
Q Consensus 186 ~~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~IvG~gGvGKTtLA~~v~~~~~~ 235 (352)
.++-|.++ ++++|++.|.++. .-++=|-++|++|.|||-||+.|.....|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 67778655 6678899998762 23556778999999999999999984433
No 268
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.71 E-value=0.043 Score=53.79 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCCC-HH-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGED-YQ----- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~~-~~----- 279 (352)
-.-++|.|.+|+|||||+..+..+..... =+.++++-+.+.. .+.++++++...-.....- ....++. ..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35678999999999999998765322111 1356777777654 4566777766542221110 0011111 11
Q ss_pred HHHHHHHHHc---CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL---TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L---~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ +++.+||++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2233456666 67999999999854
No 269
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.19 Score=48.14 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++.++|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 270
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.70 E-value=0.043 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45889999999999999999986
No 271
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.69 E-value=0.059 Score=44.67 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999877
No 272
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.66 E-value=0.0072 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 273
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.66 E-value=0.087 Score=47.26 Aligned_cols=124 Identities=18% Similarity=0.152 Sum_probs=69.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-------
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV------- 270 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~------- 270 (352)
|-++|..+=+.-.++-|.|.+|+|||+||.++... .. ..=...+||+... +..++.+.+.. ++-....
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~~~-~g~~~~~~~~~g~l 84 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNMAQ-FGWDVRKYEEEGKF 84 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHHHH-hCCCHHHHhhcCCE
Confidence 33444444345678899999999999999875431 12 2234678887765 44566655432 2211000
Q ss_pred ----------------c---cCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCC----ch----hHHHHHhhCCCCCCCc
Q 018692 271 ----------------R---VIIGEDYQLKKSILQDYLTN-KKYFIVLDDVFDE----SE----IWDDLEEVLPENQNGS 322 (352)
Q Consensus 271 ----------------~---~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~~----~~----~~~~l~~~l~~~~~gs 322 (352)
. ..+..+.+.+...+.+.+.. +.-++|+|.+-.- .. ....+...+ ...|.
T Consensus 85 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~l--k~~~~ 162 (237)
T TIGR03877 85 AIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVL--SGLGC 162 (237)
T ss_pred EEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHH--HhCCC
Confidence 0 00224666777777777644 3447999997541 11 112222333 24577
Q ss_pred EEEecc
Q 018692 323 RVLILS 328 (352)
Q Consensus 323 rIivTT 328 (352)
-+|+|+
T Consensus 163 t~llt~ 168 (237)
T TIGR03877 163 TSIFVS 168 (237)
T ss_pred EEEEEE
Confidence 777776
No 274
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.66 E-value=0.0063 Score=57.88 Aligned_cols=111 Identities=13% Similarity=0.027 Sum_probs=68.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh-cCCCCccccCCCCCHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS-VMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~-l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
..+.+.++|.|||||||++-.+.. +..-|....|+.--.+..-..++--++.. ++...- +-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 478899999999999999998876 66668665555444444333333333333 443321 2234555677
Q ss_pred HHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..+.++|.++|+||...-.+.-..+.-.+-.+++.-.|+.|+
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~ats 124 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATS 124 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHh
Confidence 778889999999998541111122223333444455567666
No 275
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.65 E-value=0.024 Score=53.88 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
-+.+.|.|..|+||||+.+.+.+ .+..+...+++. +..+... ........+. ... .+.+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~-q~e----vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNKRSLIN-QRE----VGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCccceEE-ccc----cCCCCcCHHHHHHHh
Confidence 47899999999999999999887 344444445543 2222111 1000000000 000 111223456677888
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 289 LTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
|+...=.|++|.+.+ .+.+....... ..|--++.|+
T Consensus 192 lr~~pd~i~vgEird-~~~~~~~l~aa---~tGh~v~~T~ 227 (343)
T TIGR01420 192 LREDPDVILIGEMRD-LETVELALTAA---ETGHLVFGTL 227 (343)
T ss_pred hccCCCEEEEeCCCC-HHHHHHHHHHH---HcCCcEEEEE
Confidence 888888999999998 77776544433 2354445444
No 276
>PRK06217 hypothetical protein; Validated
Probab=95.65 E-value=0.0097 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..|.|.|.+|+||||||+.+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999874
No 277
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.65 E-value=0.011 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.222 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999986
No 278
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.64 E-value=0.076 Score=50.96 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CC
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-II 274 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~ 274 (352)
.++-+.|...=..-.++.|.|.+|+|||||+.++..+ ....-...+|++..+. ...+.. -+..++....... ..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~ 143 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLA 143 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEc
Confidence 3444445443234568899999999999999988763 2222245677765443 333322 2344543322111 12
Q ss_pred CCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 018692 275 GEDYQLKKSILQDYLTNKKYFIVLDDVF 302 (352)
Q Consensus 275 ~~~~~~l~~~l~~~L~~kr~LlVLDdvw 302 (352)
..+.+.+...+.. .+.-++|+|.+.
T Consensus 144 e~~le~I~~~i~~---~~~~lVVIDSIq 168 (372)
T cd01121 144 ETNLEDILASIEE---LKPDLVIIDSIQ 168 (372)
T ss_pred cCcHHHHHHHHHh---cCCcEEEEcchH
Confidence 3344555554432 356689999984
No 279
>PRK05439 pantothenate kinase; Provisional
Probab=95.64 E-value=0.074 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 206 PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 206 ~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998876
No 280
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.64 E-value=0.053 Score=45.48 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=55.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccc-cceEEEEEeC---CCCCHHHHHHHHHHhcCCCC----ccc-cCCCCCH--
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFY-FDCLAWVRVS---MLHDFGKILDDIIKSVMPPA----RVR-VIIGEDY-- 278 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-F~~~~wv~vs---~~~~~~~il~~i~~~l~~~~----~~~-~~~~~~~-- 278 (352)
+.|-|++-.|.||||+|--..- +.-.+ +. +.++..- ....-..+++. ++.-. ... .....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~-v~~vQFlKg~~~~gE~~~l~~----l~~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYR-VGVVQFLKGGWKYGELKALER----LPNIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCe-EEEEEEeCCCCccCHHHHHHh----CCCcEEEECCCCCccCCCChHH
Confidence 4677888889999999977654 22222 22 2222222 12233333333 21100 000 0000111
Q ss_pred -----HHHHHHHHHHcCCceE-EEEEeCCCCC----chhHHHHHhhCCCCCCCcEEEecc
Q 018692 279 -----QLKKSILQDYLTNKKY-FIVLDDVFDE----SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 279 -----~~l~~~l~~~L~~kr~-LlVLDdvw~~----~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.......++.+....| |+|||.+-.. .-..+.+...+.....+.-+|+|.
T Consensus 76 ~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTG 135 (159)
T cd00561 76 DIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTG 135 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEEC
Confidence 1122334445555455 9999998441 223455666665444566799998
No 281
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.62 E-value=0.015 Score=51.94 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999977
No 282
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.62 E-value=0.0096 Score=50.80 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|.|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999988
No 283
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.61 E-value=0.019 Score=56.09 Aligned_cols=94 Identities=10% Similarity=0.156 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCccc--cCCCCCH------H
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARVR--VIIGEDY------Q 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~~~------~ 279 (352)
-.-++|.|.+|+|||+|+..+..+.. +.+-+.++++-+.+.. .+.++++++...-.....-. ...++.. .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35678999999999999999877522 2334678888887765 44666666655322111100 0111111 1
Q ss_pred HHHHHHHHHcC---CceEEEEEeCCCC
Q 018692 280 LKKSILQDYLT---NKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L~---~kr~LlVLDdvw~ 303 (352)
...-.+.++++ +++.|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 22334556654 5899999999854
No 284
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.60 E-value=0.0079 Score=51.47 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 285
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.60 E-value=0.011 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHccCC
Q 018692 212 VAILDSSGFDKTAFAADTYNNNH 234 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~~~ 234 (352)
|.|+|..|+|||||.+.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67999999999999999987543
No 286
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.57 E-value=0.0085 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 287
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.57 E-value=0.056 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 288
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.57 E-value=0.0086 Score=51.39 Aligned_cols=21 Identities=48% Similarity=0.526 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 289
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.56 E-value=0.012 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.073 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+|.|+|.+|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 290
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.091 Score=51.74 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceE
Q 018692 197 KLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCL 242 (352)
Q Consensus 197 ~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~ 242 (352)
.+++.+... ...+..+-+.|++|+|||+||..+.. ...|+.+
T Consensus 525 llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFv 567 (744)
T KOG0741|consen 525 LLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFV 567 (744)
T ss_pred HHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----hcCCCeE
Confidence 344444443 23566677889999999999999976 3456554
No 291
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.55 E-value=0.037 Score=48.95 Aligned_cols=44 Identities=25% Similarity=0.194 Sum_probs=36.2
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++||-++.++.+.-.-.+. +..-+-|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHH
Confidence 78999998888877666654 477888999999999998877766
No 292
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.55 E-value=0.15 Score=46.51 Aligned_cols=53 Identities=8% Similarity=0.006 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
-.++.|.|.+|+||||++.++..+.. ..+=..++|++... +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 34778999999999999998876321 22123577887665 3456666665543
No 293
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.55 E-value=0.12 Score=52.16 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=78.2
Q ss_pred cccHHHHHHHHhcCCCCceEEEEEcCCCccHHH-HHHHHHccCCcccccceEEEEEeCCCCCH--HHHHHHHHHhcCCCC
Q 018692 192 ENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTA-FAADTYNNNHVKFYFDCLAWVRVSMLHDF--GKILDDIIKSVMPPA 268 (352)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~il~~i~~~l~~~~ 268 (352)
-.-.++|++.+.. -.||.|||..|+|||| |+|.+|.+- |...-.|.+.|+-.+ ..+.+.+....+..-
T Consensus 358 f~~R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 358 FACRDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 3445667777655 3589999999999985 788888752 322235566666543 344555555554433
Q ss_pred cccc---------------CCCC-CHHHHHHHHHHHcCCceEEEEEeCCCCC---chh-HHHHHhhCCCCCCCcEEEecc
Q 018692 269 RVRV---------------IIGE-DYQLKKSILQDYLTNKKYFIVLDDVFDE---SEI-WDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 269 ~~~~---------------~~~~-~~~~l~~~l~~~L~~kr~LlVLDdvw~~---~~~-~~~l~~~l~~~~~gsrIivTT 328 (352)
+... +.-+ |---+.+.|.+..-+|=-.||+|..-+. .+. +-.++..+.. ...-|+|||+
T Consensus 429 G~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtS 507 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTS 507 (1042)
T ss_pred ccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEee
Confidence 2200 0111 1122333344443445568999988553 222 2233344433 3477999999
Q ss_pred ------hhhhhcCCCCceee
Q 018692 329 ------KVALHVETPKYLEL 342 (352)
Q Consensus 329 ------~va~~~~~~~~~~~ 342 (352)
..+..++..+.+.+
T Consensus 508 ATm~a~kf~nfFgn~p~f~I 527 (1042)
T KOG0924|consen 508 ATMDAQKFSNFFGNCPQFTI 527 (1042)
T ss_pred ccccHHHHHHHhCCCceeee
Confidence 55666664443333
No 294
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.55 E-value=0.011 Score=48.61 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=27.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcc-cccceEEEEEeCC
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAWVRVSM 249 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~ 249 (352)
++|.|+|..|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4799999999999999999998 443 4455555665555
No 295
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.55 E-value=0.058 Score=54.95 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHH
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDII 261 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~ 261 (352)
+.-+++-++|++|.||||||.-|..+.-.+ ++=|..|..-+...+-..|.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYs-----VvEINASDeRt~~~v~~kI~ 373 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYS-----VVEINASDERTAPMVKEKIE 373 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCce-----EEEecccccccHHHHHHHHH
Confidence 456789999999999999999998843221 34455565555444444443
No 296
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.54 E-value=0.053 Score=53.03 Aligned_cols=93 Identities=8% Similarity=0.087 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc--cCCCCC-H-----H
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR--VIIGED-Y-----Q 279 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~--~~~~~~-~-----~ 279 (352)
.-..++|.|..|+|||||.+.+....... ..+++..-.....+.++.+.+...-....... ...++. . .
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 35688999999999999999998743221 12333332333445555555544322111100 011111 1 1
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ +++..|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1222344444 47999999999855
No 297
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.53 E-value=0.036 Score=48.99 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=52.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCCCH--------
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGEDY-------- 278 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~~~-------- 278 (352)
.-++|.|.+|+|||+|+..+.++.. -+..+++.+.+.. .+.++.+++...-..+... ....++..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4678999999999999999988542 2334777787654 4556666664321111100 00111111
Q ss_pred --HHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 279 --QLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 279 --~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
-...+.+++ ++|..|+++||+-.
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhHH
Confidence 223344444 68999999999844
No 298
>PRK13947 shikimate kinase; Provisional
Probab=95.53 E-value=0.01 Score=50.22 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 299
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.52 E-value=0.025 Score=51.90 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+++.|.... +-+-++|..|+|||++++....
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 55677776543 4457999999999999999876
No 300
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.51 E-value=0.018 Score=57.94 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++.|.....+..+|+|.|..|+||||||+.+..
T Consensus 53 ra~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 53 RACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 34444544555689999999999999999999987
No 301
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.49 E-value=0.017 Score=49.66 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEE
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVR 246 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~ 246 (352)
.+++.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46889999999999999999998 5666675444443
No 302
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.48 E-value=0.053 Score=46.00 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=32.0
Q ss_pred cccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 188 ISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
++|....+.++++.+..-.....-|-|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777788888877653222244559999999999999999983
No 303
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.48 E-value=0.039 Score=53.37 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=38.6
Q ss_pred CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
..++|.++.++.+.-.+... +...+-|-++|++|+|||++|+.+.. .....|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 45888888888887666531 11346788999999999999999988 444444
No 304
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.46 E-value=0.039 Score=50.24 Aligned_cols=91 Identities=18% Similarity=0.060 Sum_probs=61.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc----------------
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV---------------- 270 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~---------------- 270 (352)
+.-+++.|+|.+|+|||+++.+... ....+...++||+..++. ..+++.+.+ ++-....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 4578999999999999999988776 455558889999888753 455554433 3221110
Q ss_pred -c-----cCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCC
Q 018692 271 -R-----VIIGEDYQLKKSILQDYLTN-KKYFIVLDDVF 302 (352)
Q Consensus 271 -~-----~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw 302 (352)
. .....+...+...+++.... +..-+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 0 00123566677777777654 47788999986
No 305
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.16 Score=47.61 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=36.1
Q ss_pred CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hhhhhcCCCCceeecCCCh
Q 018692 291 NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KVALHVETPKYLELPLTCL 347 (352)
Q Consensus 291 ~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~va~~~~~~~~~~~~l~~L 347 (352)
+++-++|+|++... ...-+.+...+-.-.+++.+|++| .+...+.+.. ..+++.++
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~ 172 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEFKLP 172 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeCCCc
Confidence 45668999999765 566777888887656678888877 3333333322 24555554
No 306
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.041 Score=45.83 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCC--CCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSM--LHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
-.+++|+|..|.|||||.+.+... .. .....+++.-.. ........ ..+..... -+..+.... .+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~q----lS~G~~~r~-~l~ 92 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDIAKLPLEELR----RRIGYVPQ----LSGGQRQRV-ALA 92 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEcccCCHHHHH----hceEEEee----CCHHHHHHH-HHH
Confidence 368899999999999999999873 22 233334332111 11111111 11111000 111223333 345
Q ss_pred HHcCCceEEEEEeCCCCC--chhHHHHHhhCCC-CCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDE--SEIWDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~~-~~~gsrIivTT 328 (352)
..+....-+++||..-.. ......+...+.. ...+.-||++|
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~s 137 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 555556778999998653 3333334333321 11256688888
No 307
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.44 E-value=0.053 Score=49.98 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc---CCCCCHHHHHH
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV---IIGEDYQLKKS 283 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~---~~~~~~~~l~~ 283 (352)
.+..++.|+|.+|+|||||...+.+ .........+ + .....+..+ .+.+...+.+.-... .-..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~~V-I-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPCAV-I-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCEEE-E-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 5689999999999999999999988 4443333322 2 111122222 112333332211110 12234455666
Q ss_pred HHHHHcCCceEEEEEeCCCC
Q 018692 284 ILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 284 ~l~~~L~~kr~LlVLDdvw~ 303 (352)
.+.......-=++++++|-+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 66665554556789999875
No 308
>PRK13949 shikimate kinase; Provisional
Probab=95.44 E-value=0.012 Score=49.94 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+-|.|+|++|+||||+++.+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.43 E-value=0.01 Score=53.52 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+...|-++||+|+||||..+.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 35667888999999999999999874
No 310
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.42 E-value=0.014 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+..+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 311
>PRK14528 adenylate kinase; Provisional
Probab=95.41 E-value=0.041 Score=47.46 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.|.|.|.+|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 312
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.19 Score=45.33 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=65.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCC-ccc----------cc---ceEEEEEeC----CCC--CHH---------------
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNH-VKF----------YF---DCLAWVRVS----MLH--DFG--------------- 254 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~-~~~----------~F---~~~~wv~vs----~~~--~~~--------------- 254 (352)
.+++|+|+.|.|||||.+.+..--+ .+. .+ ..+.||.-. .+| ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987111 110 11 235555221 111 112
Q ss_pred -------HHHHHHHHhcCCCCcc-ccCCC-CCHHHHHHHHHHHcCCceEEEEEeCCCCC-----chhHHHHHhhCCCCCC
Q 018692 255 -------KILDDIIKSVMPPARV-RVIIG-EDYQLKKSILQDYLTNKKYFIVLDDVFDE-----SEIWDDLEEVLPENQN 320 (352)
Q Consensus 255 -------~il~~i~~~l~~~~~~-~~~~~-~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-----~~~~~~l~~~l~~~~~ 320 (352)
+...+.++.++...-. ..... +.-+.-.-.|.+.|..+.=|++||.--.. ....-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2334444444433211 01111 22233345577778888889999985431 33444555555443
Q ss_pred CcEEEecc
Q 018692 321 GSRVLILS 328 (352)
Q Consensus 321 gsrIivTT 328 (352)
|.-|+++|
T Consensus 189 g~tIl~vt 196 (254)
T COG1121 189 GKTVLMVT 196 (254)
T ss_pred CCEEEEEe
Confidence 88899999
No 313
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.018 Score=59.50 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=36.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++||+++.+++++.|.....+-.| .+|.+|||||+++.-+..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 67999999999999999987555554 489999999998765544
No 314
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.38 E-value=0.26 Score=48.04 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.++|..|+||||++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988764
No 315
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.021 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
--+++|+|..|+|||||++.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999864
No 316
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.37 E-value=0.014 Score=47.79 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999987
No 317
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.37 E-value=0.013 Score=50.04 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 318
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.37 E-value=0.013 Score=51.25 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+|+|+|..|+|||||++.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 319
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.013 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999999884
No 320
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.35 E-value=0.011 Score=48.73 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999873
No 321
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.32 E-value=0.014 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999873
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.30 E-value=0.13 Score=47.03 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=62.4
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC
Q 018692 189 SEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPA 268 (352)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~ 268 (352)
.|...+..+.+..+.... -+++.|.|..|+||||++..+.+ .+...-...+ .+..+.... +.. ..++..
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~ii--tiEdp~E~~--~~~-~~q~~v-- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNII--TVEDPVEYQ--IPG-INQVQV-- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEE--EECCCceec--CCC-ceEEEe--
Confidence 454444444444444332 46889999999999999998765 2222111122 222221110 000 011111
Q ss_pred ccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 269 RVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.........+.++..|+...=.|+++.+.+ .+....+..+... |- .++||
T Consensus 131 -----~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~aa~t---Gh-~v~tT 180 (264)
T cd01129 131 -----NEKAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQAALT---GH-LVLST 180 (264)
T ss_pred -----CCcCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHHHHc---CC-cEEEE
Confidence 111112456667777777777899999988 7665544444422 32 25666
No 323
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.11 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.|-+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3566789999999999999886
No 324
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.29 E-value=0.014 Score=48.78 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCccc-ccceEEEEEe
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKF-YFDCLAWVRV 247 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~-~F~~~~wv~v 247 (352)
|++|+|+.|+|||||+..+.. ..+. .+...+.-+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecc
Confidence 588999999999999999988 3332 2555444443
No 325
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.28 E-value=0.043 Score=53.39 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=34.2
Q ss_pred CccccccccHHHHHHHHhc-------C-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE-------G-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-------~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+...+.. . ......+-++|.+|+|||+||+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4589999888877555421 1 01235678999999999999999986
No 326
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.27 E-value=0.057 Score=53.50 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=36.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|......++.+.+..-...-..+-|.|.+|+|||++|+.++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 56889888888877777543233445679999999999999999884
No 327
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.021 Score=48.78 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
-.++.|.|++|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999853
No 328
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.26 E-value=0.062 Score=52.41 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC-CCHHHHHHHHHHhcCCCCcc--ccCCCC-CHHH----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML-HDFGKILDDIIKSVMPPARV--RVIIGE-DYQL---- 280 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~il~~i~~~l~~~~~~--~~~~~~-~~~~---- 280 (352)
-..++|+|..|+|||||.+.+.+.. +.+...+..+.+. ..+.+.+.+....-.....- ....+. ....
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4588999999999999999998732 2344555555554 34445555543211000000 001111 1111
Q ss_pred -HHHHHHHHc--CCceEEEEEeCCCC
Q 018692 281 -KKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 281 -l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
....+.+++ ++++.|+++||+-.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122244444 57999999999854
No 329
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.24 E-value=0.099 Score=47.63 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCH--HHHHHHHHHhcCCCCcc-----ccC--CC--
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDF--GKILDDIIKSVMPPARV-----RVI--IG-- 275 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~il~~i~~~l~~~~~~-----~~~--~~-- 275 (352)
+.-.++-|.|.+|+|||+|+.++... ..+. =...++++...+.+. ..+ ...+..++..... ... ..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~-~a~~-Ge~vlyis~Ee~~~~~~~~l-~~~a~~~g~d~~~~~~~l~~id~~~~~ 110 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT-QASR-GNPVLFVTVESPANFVYTSL-KERAKAMGVDFDKIEENIILIDAASST 110 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH-HHhC-CCcEEEEEecCCchHHHHHH-HHHHHHcCCCHHHHhCCEEEEECCCch
Confidence 34678889999999999999886542 1122 235677777643321 122 1223333322110 000 01
Q ss_pred ---CCHHHHHHHHHHHcCC-ceEEEEEeCCC
Q 018692 276 ---EDYQLKKSILQDYLTN-KKYFIVLDDVF 302 (352)
Q Consensus 276 ---~~~~~l~~~l~~~L~~-kr~LlVLDdvw 302 (352)
.+.+.+...+...++. +.=++|+|.+-
T Consensus 111 ~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls 141 (259)
T TIGR03878 111 ELRENVPNLLATLAYAIKEYKVKNTVIDSIT 141 (259)
T ss_pred hhhhhHHHHHHHHHHHHHhhCCCEEEEcCch
Confidence 2345555556555533 44489999985
No 330
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.05 Score=51.06 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=40.3
Q ss_pred CccccccccHHHHHHHHhcC----C-------CCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIEG----P-------SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.++-|.++.+++|.+...-+ + ..++=|-.+|++|.|||-||+.|.| +....|
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF 213 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF 213 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE
Confidence 66778999999888876432 1 2455566999999999999999999 666555
No 331
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.22 E-value=0.14 Score=50.67 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=52.3
Q ss_pred eEEEEEcCCCccHHHHH-HHHHccCCc-----ccccceEEEEEeCCCCCH-HHHHHHHHHhcCCCCccc---cCCCC---
Q 018692 210 SVVAILDSSGFDKTAFA-ADTYNNNHV-----KFYFDCLAWVRVSMLHDF-GKILDDIIKSVMPPARVR---VIIGE--- 276 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~-~~il~~i~~~l~~~~~~~---~~~~~--- 276 (352)
.-++|.|-.|+|||+|| -.+.|...+ .++-..++++.+.+..+- .+ +.+.+..-+.-.... ...+.
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCHH
Confidence 46789999999999997 556664322 134456788888887643 33 333333333111110 01111
Q ss_pred -------CHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 277 -------DYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 277 -------~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
.--.+.+.+++ +++..|+|+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 11233344443 57999999999965
No 332
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.22 E-value=0.089 Score=51.17 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCcc--ccCCCC-CHHH----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSM-LHDFGKILDDIIKSVMPPARV--RVIIGE-DYQL---- 280 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~il~~i~~~l~~~~~~--~~~~~~-~~~~---- 280 (352)
-..++|+|..|+|||||.+.+.... +. +....+.+.+ .-.+.++.++.+..-+..... ....+. ....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~--~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT--DA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--CC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998732 22 2222233333 334455555544332211110 001111 1111
Q ss_pred -HHHHHHHHc--CCceEEEEEeCCCC
Q 018692 281 -KKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 281 -l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
....+.+++ +++..|+++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 222344554 57999999999855
No 333
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.21 E-value=0.017 Score=54.69 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCCCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 182 GKPRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..||..++|-++.+..|+..+.++. ++-+-|.|..|+||||+|+.+++
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~--~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPK--IGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 4455889999988888888777643 55566999999999999999975
No 334
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.21 E-value=0.014 Score=48.14 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
|.++|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 335
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.19 E-value=0.26 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+++++|.+|+||||++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 47999999999999999988755
No 336
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.19 E-value=0.2 Score=44.48 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=66.0
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc---------
Q 018692 200 DLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV--------- 270 (352)
Q Consensus 200 ~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~--------- 270 (352)
+.|..+=+.-.++.|.|.+|+|||||+.++.... .+ .-...+|++...+ ...+.+. +.+++.....
T Consensus 11 ~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i 85 (229)
T TIGR03881 11 KLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVI 85 (229)
T ss_pred HhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEE
Confidence 3343332345788999999999999998865421 12 2245678876443 3444333 2222221100
Q ss_pred -----------ccCCCCCHHHHHHHHHHHcCC---ceEEEEEeCCCCC----chhHH----HHHhhCCCCCCCcEEEecc
Q 018692 271 -----------RVIIGEDYQLKKSILQDYLTN---KKYFIVLDDVFDE----SEIWD----DLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 271 -----------~~~~~~~~~~l~~~l~~~L~~---kr~LlVLDdvw~~----~~~~~----~l~~~l~~~~~gsrIivTT 328 (352)
......+.+++...+++.++. +.-++|+|.+..- +..-. .+...+ ...|.-+|+|+
T Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l--~~~~~tvil~~ 163 (229)
T TIGR03881 86 IDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVL--NRWNFTILLTS 163 (229)
T ss_pred EEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHH--HhCCCEEEEEe
Confidence 001134567777777776543 3458899997531 11111 222223 23577888888
No 337
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.19 E-value=0.036 Score=46.57 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=30.8
Q ss_pred cccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 192 ENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.+..++|.++|.. +++.++|..|+|||||...+..+.
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567888888853 688899999999999999998853
No 338
>PRK14530 adenylate kinase; Provisional
Probab=95.19 E-value=0.015 Score=51.36 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 339
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.17 E-value=0.14 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-..++|+|..|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999975
No 340
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.12 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++++|..|+||||+...+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999987754
No 341
>PRK13975 thymidylate kinase; Provisional
Probab=95.15 E-value=0.017 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|+.|+||||+++.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999998
No 342
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.15 E-value=0.29 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+.++.|..|+|||||.+.+..
T Consensus 31 Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 343
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.068 Score=54.36 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC--CHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH--DFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
..-|-|.|..|+|||+||+.+++... +.+.-+...|+.|.-- ..+.++ ..+...+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQ---------------------k~l~~vfs 488 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQ---------------------KFLNNVFS 488 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHH---------------------HHHHHHHH
Confidence 45677899999999999999998433 3333334444443321 111111 12223334
Q ss_pred HHcCCceEEEEEeCCC
Q 018692 287 DYLTNKKYFIVLDDVF 302 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw 302 (352)
..+....-+|||||+.
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 4445678899999985
No 344
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.14 E-value=0.038 Score=47.56 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|+|.|..|+||||+++.+.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 345
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.13 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.++.++|..|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999999888876
No 346
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.13 E-value=0.088 Score=49.47 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCccc--cCCCC-CHH-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSM-LHDFGKILDDIIKSVMPPARVR--VIIGE-DYQ----- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~-~~~----- 279 (352)
-..++|+|..|+|||||.+.+.+... . ++.....+.. .-++.++..+....-+...... ...++ ...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999987322 1 2333344443 3355566655554322111100 01111 111
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ ++|..|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1122233333 58999999999854
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.11 E-value=0.021 Score=47.72 Aligned_cols=35 Identities=17% Similarity=-0.080 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEE
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWV 245 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv 245 (352)
..+|-|.|.+|+||||||+.+.. +....-....++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 35888999999999999999988 444433334444
No 348
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.35 Score=45.39 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=38.4
Q ss_pred CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hhhhhcCCCCceeecCCChh
Q 018692 291 NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KVALHVETPKYLELPLTCLV 348 (352)
Q Consensus 291 ~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~va~~~~~~~~~~~~l~~L~ 348 (352)
+++=.+|+|++... ....+.+...+-+-.+++.+|++| .+-..+-+.. ..+++.+++
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~ 168 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPS 168 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCC
Confidence 44558889999765 778888998887766778877777 3444444433 245666654
No 349
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.09 E-value=0.12 Score=51.59 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc----
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV---- 270 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~---- 270 (352)
...+-+.|...=..-.++-|.|.+|+|||||+.++.... -..=...++++..+ +..++...+ ++++.....
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 345555565553456788899999999999998876632 12223566666555 455666664 445432211
Q ss_pred -------ccCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCC
Q 018692 271 -------RVIIGEDYQLKKSILQDYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 271 -------~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~ 303 (352)
........++....+.+.+.. +.-.+|+|.+..
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 011234456777777777754 455899999853
No 350
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.09 E-value=0.078 Score=51.89 Aligned_cols=91 Identities=9% Similarity=0.098 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCccc--cC-CCCCHH-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARVR--VI-IGEDYQ----- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~~--~~-~~~~~~----- 279 (352)
-..++|+|..|+|||||++.+.... . .+..+...+.... ++.++...+...-....... .. +.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~---~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT---E-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---C-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998632 1 2333333444433 45555555544322221110 01 111111
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
.....+.+++ ++++.|+++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1122244444 57999999999854
No 351
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.08 E-value=0.019 Score=48.94 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...|.|+|+.|+||||+++.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999987
No 352
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.08 E-value=0.02 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++++|+++|..|+|||||..++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999998763
No 353
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.07 E-value=1.5 Score=43.60 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=32.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-+|.+..- .|.+-|.-.-+--.-+++||+.|+|||||.+.+|-+
T Consensus 394 nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd 439 (614)
T KOG0927|consen 394 NVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD 439 (614)
T ss_pred ccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc
Confidence 4456666555 555555544223456799999999999999999976
No 354
>PRK05922 type III secretion system ATPase; Validated
Probab=95.06 E-value=0.084 Score=51.48 Aligned_cols=91 Identities=7% Similarity=0.118 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCccc--cCCCC-CHH-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSM-LHDFGKILDDIIKSVMPPARVR--VIIGE-DYQ----- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~-~~~----- 279 (352)
-..++|+|..|+|||||.+.+.... . -+....+.+.+ ...+...+.+..........-. ...+. ...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~--~--~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS--K--STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC--C--CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999998732 1 23333333333 2234455555544332221110 01111 111
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ +++++|+++||+-.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1222344444 57999999999854
No 355
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.05 E-value=0.028 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999988443
No 356
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.05 E-value=0.064 Score=52.42 Aligned_cols=95 Identities=13% Similarity=0.202 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccc--ccc---------eEEEEEeCCCCCHHHHHHHHHHhcCCCCccc---cCC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKF--YFD---------CLAWVRVSMLHDFGKILDDIIKSVMPPARVR---VII 274 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~---~~~ 274 (352)
-.-++|.|-+|+|||||+..+.++..... -.| .++++-+.+.....+.+.+.+..-+.-.... ...
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 35678999999999999999887543110 011 5677777877666665555555444111110 011
Q ss_pred CC-CHH-----HHHHHHHHHcC---CceEEEEEeCCCC
Q 018692 275 GE-DYQ-----LKKSILQDYLT---NKKYFIVLDDVFD 303 (352)
Q Consensus 275 ~~-~~~-----~l~~~l~~~L~---~kr~LlVLDdvw~ 303 (352)
+. ... .....+.++++ ++..|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 11 111 12233555555 5999999999954
No 357
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.02 E-value=0.014 Score=45.46 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999876
No 358
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=0.34 Score=45.62 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=38.6
Q ss_pred CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hhhhhcCCCCceeecCCChh
Q 018692 291 NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KVALHVETPKYLELPLTCLV 348 (352)
Q Consensus 291 ~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~va~~~~~~~~~~~~l~~L~ 348 (352)
+++=.+|+|++... ....+.+...+-.-.+++.+|++| .+....-+.. ..+++.+++
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~ 167 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPE 167 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCC
Confidence 56668889999876 778888998888766788888887 3333333222 245666653
No 359
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.01 E-value=0.024 Score=45.58 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHccCCcccccce
Q 018692 212 VAILDSSGFDKTAFAADTYNNNHVKFYFDC 241 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~~~~~~~F~~ 241 (352)
+-|.|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 56899999999999999998 66677754
No 360
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.00 E-value=0.015 Score=48.77 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 361
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.98 E-value=0.065 Score=52.70 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccc--eEEEEEeCCCC-CHHHHHHHHHHhcCCCCccc--cCCCC-C-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CLAWVRVSMLH-DFGKILDDIIKSVMPPARVR--VIIGE-D----- 277 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~----- 277 (352)
=.-++|.|-.|+|||||+..+.++....+.+. .++++-+.+.. .+.++++++...-.....-. ...+. .
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 34678999999999999999988544332121 56677776654 45666666654322211100 01111 1
Q ss_pred HHHHHHHHHHHcC---CceEEEEEeCCCC
Q 018692 278 YQLKKSILQDYLT---NKKYFIVLDDVFD 303 (352)
Q Consensus 278 ~~~l~~~l~~~L~---~kr~LlVLDdvw~ 303 (352)
.......+.++++ +++.||++||+-.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1122233555554 6899999999854
No 362
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.97 E-value=0.028 Score=53.18 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=37.0
Q ss_pred CCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 184 PRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
||..+||.+..+..++-.+.++ ...-+.|.|..|+|||||++.+..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3467899998888887777653 355677999999999999999974
No 363
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.45 Score=45.15 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=38.8
Q ss_pred CceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc----hhhhhcCCCCceeecCCChh
Q 018692 291 NKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS----KVALHVETPKYLELPLTCLV 348 (352)
Q Consensus 291 ~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT----~va~~~~~~~~~~~~l~~L~ 348 (352)
+++-++|+|++... ...++.+...+-.-.+++.+|++| .+...+-+.. ..+++.+++
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~ 192 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPA 192 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC-EEEEecCCC
Confidence 45558889999876 788899999988767788877777 3333333322 255666654
No 364
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.93 E-value=0.026 Score=49.83 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++.|+|..|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999999863
No 365
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.26 Score=52.06 Aligned_cols=116 Identities=13% Similarity=0.198 Sum_probs=68.8
Q ss_pred CccccccccHHHHHHHHhcC------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDD 259 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~ 259 (352)
..++|-++.+..|.+.+... +.....+.+.|+.|+|||-||+.+.. -+-+.++..+-+..| +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh-
Confidence 45677777777777777643 12466778899999999999999877 333333333333333 2222
Q ss_pred HHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceE-EEEEeCCCCC-chhHHHHHhhCC
Q 018692 260 IIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKY-FIVLDDVFDE-SEIWDDLEEVLP 316 (352)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVLDdvw~~-~~~~~~l~~~l~ 316 (352)
+.+-++.+.. .-+ .+....|.+.++.+.| .|.||||... ......+...+.
T Consensus 633 vskligsp~g---yvG---~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPG---YVG---KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcc---ccc---chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 2222233221 111 2233466677777766 7888999764 555565555554
No 366
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.91 E-value=0.032 Score=48.22 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999987
No 367
>PRK13948 shikimate kinase; Provisional
Probab=94.91 E-value=0.023 Score=48.83 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999987
No 368
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.90 E-value=0.091 Score=51.93 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=34.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|......++.+.+..-......+.|.|..|+||+++|+.++..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~ 180 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRH 180 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 34777776677777666543222345679999999999999999873
No 369
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.89 E-value=0.04 Score=51.98 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|++.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4566666655445688999999999999999998765
No 370
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.88 E-value=0.061 Score=50.35 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
-..+.|+|..|+|||||++.+.. .+..... .+.+.-........ .... ++..... ..........+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~--~~~~~~~-iv~ied~~El~~~~--~~~~-~l~~~~~---~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD--EIPKDER-IITIEDTREIFLPH--PNYV-HLFYSKG---GQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc--cCCcccc-EEEEcCccccCCCC--CCEE-EEEecCC---CCCcCccCHHHHHHHH
Confidence 46889999999999999999886 2322211 22221111111100 0000 0000000 0111123445566667
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhh
Q 018692 289 LTNKKYFIVLDDVFDESEIWDDLEEV 314 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~~~~~~~l~~~ 314 (352)
|+...=.|++|.+.. .+.|+.+...
T Consensus 215 Lr~~pd~ii~gE~r~-~e~~~~l~a~ 239 (308)
T TIGR02788 215 LRMRPDRIILGELRG-DEAFDFIRAV 239 (308)
T ss_pred hcCCCCeEEEeccCC-HHHHHHHHHH
Confidence 777777899999998 7777654333
No 371
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.88 E-value=0.072 Score=51.76 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCC-CHH-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGE-DYQ----- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~-~~~----- 279 (352)
-..++|+|..|+|||||.+.+.+... -+..+...+.+.. .+.++.++....-...... ....+. ...
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999887322 1233444555543 3445555444332111110 001111 111
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ ++++.|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1122234444 58999999999854
No 372
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.87 E-value=0.11 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.|++++|..|+||||++..++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999999886
No 373
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.86 E-value=0.094 Score=51.37 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCCC-HH-----
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGED-YQ----- 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~~-~~----- 279 (352)
-.-++|.|.+|+|||||+..+..+... ++=...+++-+.+.. .+.++++++...-...... ....++. ..
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 456789999999999999997763211 111366777776654 4566777765432111100 0011111 11
Q ss_pred HHHHHHHHHc---CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL---TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L---~~kr~LlVLDdvw~ 303 (352)
...-.+.+++ +++..|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 2233466666 46899999999854
No 374
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.86 E-value=0.061 Score=52.04 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=37.0
Q ss_pred CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.++.++.+..++... +...+.|.++|++|+|||+||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999988888541 11246788999999999999999987
No 375
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.038 Score=45.46 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
..-|-|.|-+|+|||||+..+..- . ..-|+++|.-..-+.+... ...... -..-|.+.+.+.|...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~l~~g----yDE~y~---c~i~DEdkv~D~Le~~ 72 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDLVKENNLYEG----YDEEYK---CHILDEDKVLDELEPL 72 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhHHhhhcchhc----cccccc---CccccHHHHHHHHHHH
Confidence 345779999999999999999861 1 1235555543222221111 111111 1234667777777776
Q ss_pred cCCc
Q 018692 289 LTNK 292 (352)
Q Consensus 289 L~~k 292 (352)
+.+.
T Consensus 73 m~~G 76 (176)
T KOG3347|consen 73 MIEG 76 (176)
T ss_pred HhcC
Confidence 6543
No 376
>PRK04182 cytidylate kinase; Provisional
Probab=94.84 E-value=0.023 Score=48.26 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 377
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.84 E-value=0.075 Score=51.66 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--ccCCCC-CHH----
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--RVIIGE-DYQ---- 279 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~-~~~---- 279 (352)
.-..++|+|..|+|||||.+.+.+... . +......+.+.. .+.++..+.+..-+..... ....+. ...
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~--~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAK--A--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--C--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 356889999999999999998887322 1 222223344433 3444555443321111000 001111 111
Q ss_pred -HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 -LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 -~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
.....+.+++ +++..|+++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 1223344444 47999999999854
No 378
>PRK13946 shikimate kinase; Provisional
Probab=94.83 E-value=0.023 Score=48.87 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.|.++|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999988
No 379
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.83 E-value=0.12 Score=48.87 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHH
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDII 261 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~ 261 (352)
++++.|..= ..-..++|.|..|+|||+|++.+.+.. +-+.++++.+.+.. .+.+++.++-
T Consensus 146 rvID~l~Pi-~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPV-VKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccc-cCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 445555432 123578999999999999999999843 23567888887664 3456666653
No 380
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.37 Score=48.59 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||.+.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 381
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.83 E-value=0.026 Score=49.18 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999883
No 382
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.83 E-value=0.027 Score=43.94 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~ 230 (352)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999976
No 383
>PRK04328 hypothetical protein; Provisional
Probab=94.82 E-value=0.11 Score=46.90 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=67.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-------
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV------- 270 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~------- 270 (352)
|-++|..+=+.-.++-|.|.+|+|||+|+.++... ..+. -...+|++..++ ...+.+. +++++-....
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee~--~~~i~~~-~~~~g~d~~~~~~~~~l 86 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEEH--PVQVRRN-MRQFGWDVRKYEEEGKF 86 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeCC--HHHHHHH-HHHcCCCHHHHhhcCCE
Confidence 33344443234678889999999999999886542 2222 345788877664 3344333 3333321000
Q ss_pred ------c-------------cCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCC----ch----hHHHHHhhCCCCCCCc
Q 018692 271 ------R-------------VIIGEDYQLKKSILQDYLTN-KKYFIVLDDVFDE----SE----IWDDLEEVLPENQNGS 322 (352)
Q Consensus 271 ------~-------------~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~~----~~----~~~~l~~~l~~~~~gs 322 (352)
+ .....+...+...+.+.+.. +.-++|+|.+-.- .. ....+...+ ...|+
T Consensus 87 ~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~l--k~~g~ 164 (249)
T PRK04328 87 AIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVL--SGLGC 164 (249)
T ss_pred EEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHH--HhCCC
Confidence 0 00123556666777776654 4447999998431 11 112233333 24577
Q ss_pred EEEecc
Q 018692 323 RVLILS 328 (352)
Q Consensus 323 rIivTT 328 (352)
-+|+|+
T Consensus 165 t~llt~ 170 (249)
T PRK04328 165 TAIFVS 170 (249)
T ss_pred EEEEEE
Confidence 777776
No 384
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.80 E-value=0.11 Score=51.12 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCccHHHHH-HHHHccCCcccccce-EEEEEeCCCC-CHHHHHHHHHHhcCCCCccc--cC-CCCCH----
Q 018692 209 LSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDC-LAWVRVSMLH-DFGKILDDIIKSVMPPARVR--VI-IGEDY---- 278 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~il~~i~~~l~~~~~~~--~~-~~~~~---- 278 (352)
-.-++|.|-.|+|||||| ..+.+.. .-+. ++++.+.+.. .+.++.+.+...-.....-. .. +....
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 346789999999999996 4565531 2344 3777887654 44566666554322211110 01 11111
Q ss_pred -----HHHHHHHHHHcCCceEEEEEeCCCCCchhHHHH
Q 018692 279 -----QLKKSILQDYLTNKKYFIVLDDVFDESEIWDDL 311 (352)
Q Consensus 279 -----~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l 311 (352)
...++.++. ++++.|+|+||+-.....+.++
T Consensus 217 ap~~a~aiAEyfr~--~G~~VLlv~DdlTr~A~A~REi 252 (485)
T CHL00059 217 APYTGAALAEYFMY--RGRHTLIIYDDLSKQAQAYRQM 252 (485)
T ss_pred HHHHHhhHHHHHHH--cCCCEEEEEcChhHHHHHHHHH
Confidence 223344443 5799999999996523334444
No 385
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.80 E-value=0.032 Score=52.53 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=41.1
Q ss_pred CccccccccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG----PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.++.+++|++.+... +..-+++-++|+.|.||||||..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999753 45678999999999999999999876
No 386
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.80 E-value=0.028 Score=46.54 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHccC
Q 018692 211 VVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
-|+++|.+|+|||||...+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 387
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.80 E-value=0.035 Score=48.69 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++.|.|..|.||||+.+.+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 388
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.79 E-value=0.1 Score=48.55 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=56.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCccccc-ceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
+.+.|+|..|+||||+++.+.+ .+.... +.++ +++.....+. +.....-............+.++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~~El~---------~~~~~~v~~~~~~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDTRELQ---------CAAPNVVQLRTSDDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCchhhc---------CCCCCEEEEEecCCCCCHHHHHHHH
Confidence 4566999999999999999986 332211 1222 2333221110 0000000000001111556677788
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 289 LTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
|+...=-||+..+.+ .+.|+-+ .+...+..|+ +||
T Consensus 201 LR~~pD~iivGEiR~-~ea~~~l-~a~~tGh~G~---~tT 235 (299)
T TIGR02782 201 LRLRPDRIIVGEVRG-GEALDLL-KAWNTGHPGG---IAT 235 (299)
T ss_pred hcCCCCEEEEeccCC-HHHHHHH-HHHHcCCCCe---EEe
Confidence 887777889999999 8887654 4443344443 466
No 389
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.78 E-value=0.11 Score=50.69 Aligned_cols=86 Identities=7% Similarity=-0.014 Sum_probs=47.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCH-HHHHHHHHHhcCCCCccc----cCCC--------
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDF-GKILDDIIKSVMPPARVR----VIIG-------- 275 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~il~~i~~~l~~~~~~~----~~~~-------- 275 (352)
-..++|+|..|+|||||++.+..... -+......+.+...- .+..+. .++...... ...+
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R~~ 229 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMRKY 229 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHhhH
Confidence 45889999999999999999986322 233344444444332 333332 233211110 0001
Q ss_pred --CCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 276 --EDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 276 --~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
.....+++.+++ +++..|+++||+-.
T Consensus 230 ~~~~a~~iAEyFrd--~G~~Vll~~DslTr 257 (434)
T PRK08472 230 GAFCAMSVAEYFKN--QGLDVLFIMDSVTR 257 (434)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEecccchH
Confidence 111223334443 58999999999955
No 390
>PLN02348 phosphoribulokinase
Probab=94.78 E-value=0.042 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 206 PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 206 ~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+.-+|+|.|.+|+||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999887
No 391
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.78 E-value=0.025 Score=51.95 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|+|.+|+|||||+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 392
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.77 E-value=0.025 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||.+.++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEEccCCCccccceeeecc
Confidence 5889999999999999999876
No 393
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.023 Score=47.94 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018692 211 VVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~ 230 (352)
.|+|.|-+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 394
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.77 E-value=0.22 Score=45.65 Aligned_cols=118 Identities=13% Similarity=0.037 Sum_probs=78.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|-.. ..+++.++......-+...++|+.|+|||+-++.+++. .+..+.+..++.++...++..+.....
T Consensus 72 ~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 72 PDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred ccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHh
Confidence 44555433 23455555543333447789999999999999999882 223344467777777777776666555
Q ss_pred CCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCC
Q 018692 266 PPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLP 316 (352)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~ 316 (352)
.... ....+....+...+.+..-+++.|..... ...++.|.....
T Consensus 145 ~~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 145 GATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred cccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 4432 34456667777777888889999988664 666777766553
No 395
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.77 E-value=0.11 Score=50.83 Aligned_cols=92 Identities=9% Similarity=0.124 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCcc----cc----CCCCCH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSM-LHDFGKILDDIIKSVMPPARV----RV----IIGEDY 278 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~il~~i~~~l~~~~~~----~~----~~~~~~ 278 (352)
.-..++|+|..|+|||||++.+...... +..+...+.. .-++.++..+.+..-+..... ++ ......
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~~----dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQA----DVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccCC----CeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 3568899999999999999998873221 2222222222 223344443433332211100 00 011111
Q ss_pred HHHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 279 QLKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 279 ~~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
......+.+++ +++..||++||+-.
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhH
Confidence 22333444444 47999999999855
No 396
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.096 Score=48.58 Aligned_cols=82 Identities=10% Similarity=0.151 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcc--cccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVK--FYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSIL 285 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l 285 (352)
.-++|-+.|++|.|||+|.+.+++.-.++ +.+.....+.+.. ..++.+.... ++.-...+-..+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE----------SgKlV~kmF~kI 241 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE----------SGKLVAKMFQKI 241 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh----------hhhHHHHHHHHH
Confidence 35788899999999999999999875444 3455555554432 2344333321 122334556677
Q ss_pred HHHcCCce--EEEEEeCCCC
Q 018692 286 QDYLTNKK--YFIVLDDVFD 303 (352)
Q Consensus 286 ~~~L~~kr--~LlVLDdvw~ 303 (352)
++.+.++. .++.+|.|.+
T Consensus 242 ~ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHH
Confidence 77776654 3556788754
No 397
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.74 E-value=0.076 Score=54.38 Aligned_cols=73 Identities=8% Similarity=-0.055 Sum_probs=47.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc-cceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY-FDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
.+++|.++.++.+...+.... .+-++|++|+||||+++.+.+ .+..+ |...+++.-+. .+...+++.+...+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~-~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPE-DPNMPRIVEVPAGE 90 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCC-CCchHHHHHHHHhh
Confidence 788999888887777776532 445899999999999999987 44433 33334333222 23344455555544
Q ss_pred C
Q 018692 265 M 265 (352)
Q Consensus 265 ~ 265 (352)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 4
No 398
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.74 E-value=0.024 Score=52.10 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=19.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|+|-|||||||++..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999998887654
No 399
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.74 E-value=0.044 Score=49.37 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=30.0
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++++.|.....+..+|+|.|.+|+||+||.-.+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45677777776656788999999999999999988766
No 400
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.74 E-value=0.053 Score=53.90 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=32.9
Q ss_pred CccccccccHHHHHHHHhc--------CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE--------GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|.+..++.+.+.... +-...+-|-++|++|+|||.+|+.+.+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 6778877766666543211 112345677999999999999999998
No 401
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.03 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988766
No 402
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.72 E-value=0.022 Score=52.19 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998887764
No 403
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.71 E-value=0.12 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-..++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568899999999999999998873
No 404
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.71 E-value=0.023 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHccC
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 457899999999999999998763
No 405
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.70 E-value=0.039 Score=51.44 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++.+........+|+|+|.+|+|||||+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4445555544445688999999999999999998776
No 406
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.66 E-value=0.4 Score=41.35 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCCC---chhHHHHHhhCCCCCCCcEEEecc
Q 018692 279 QLKKSILQDYLTNKKYFIVLDDVFDE---SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 279 ~~l~~~l~~~L~~kr~LlVLDdvw~~---~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
++..-.+.+.+-++.-+|+=|.---. ...|+.+.-.-.-+..|+-||++|
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~AT 194 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMAT 194 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEe
Confidence 44445566677778888888864322 445654433322356799999999
No 407
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.65 E-value=0.03 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 408
>PRK15115 response regulator GlrR; Provisional
Probab=94.64 E-value=0.12 Score=50.74 Aligned_cols=46 Identities=20% Similarity=0.026 Sum_probs=32.2
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 187 DISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++|......++.+....-...-..+-|.|.+|+|||++|+.+++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 4677666666666655432222334569999999999999999874
No 409
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.61 E-value=0.2 Score=44.97 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+-.|+|++|+|||+|+..+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999875
No 410
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.61 E-value=0.2 Score=49.46 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CC
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-II 274 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~ 274 (352)
..+-+.|..+=..-.++-|.|.+|+|||||+.++..+.. ..=...+|++..+. ...+... ++.++....... ..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~ 141 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLA 141 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeC
Confidence 444455544433456889999999999999999876322 11234677765543 3343322 444543222111 12
Q ss_pred CCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 018692 275 GEDYQLKKSILQDYLTNKKYFIVLDDVF 302 (352)
Q Consensus 275 ~~~~~~l~~~l~~~L~~kr~LlVLDdvw 302 (352)
..+.+.+...+.+ .+.=++|+|.+.
T Consensus 142 e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 142 ETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCCHHHHHHHHHh---hCCCEEEEechh
Confidence 3345555554433 345589999985
No 411
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.60 E-value=0.31 Score=47.67 Aligned_cols=91 Identities=9% Similarity=0.136 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCC-CCCHHHHHHHHHHhcCCCCcc--ccCCCCCHH------
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSM-LHDFGKILDDIIKSVMPPARV--RVIIGEDYQ------ 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~il~~i~~~l~~~~~~--~~~~~~~~~------ 279 (352)
-..++|.|..|+|||||.+.+.... . -+....+.+.. ..++.+..++..........- .........
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~~--~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~ 220 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARGA--S--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAA 220 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHH
Confidence 4577999999999999999998732 2 23333344443 345555555444322111110 001111111
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
.....+.+++ ++++.|+++|++-.
T Consensus 221 ~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 221 YTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 1222344444 46899999999954
No 412
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.59 E-value=0.029 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
--.++|+|.+|+|||||-+.+..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999874
No 413
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=94.59 E-value=0.16 Score=42.17 Aligned_cols=89 Identities=19% Similarity=0.337 Sum_probs=53.0
Q ss_pred ccHHHHHHHHhc--CCCCceEEEEEcCCCccHHH--HHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCC
Q 018692 193 NSGEKLFDLLIE--GPSGLSVVAILDSSGFDKTA--FAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPA 268 (352)
Q Consensus 193 ~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTt--LA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~ 268 (352)
+++--|++.|.. ...+-++|+|-||+-||||. .|..||.+ .-|.-+|.+. +-+.+-+++....
T Consensus 36 eeLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAn---------KrW~f~SSTl----ikQTvRs~L~~dE 102 (192)
T PF11868_consen 36 EELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCAN---------KRWLFLSSTL----IKQTVRSQLIEDE 102 (192)
T ss_pred hHhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcC---------ceEEEeeHHH----HHHHHHHHhhhcc
Confidence 344455555543 13457999999999999994 55667763 4588777641 2223333443322
Q ss_pred ccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC----chhHHHHHhhC
Q 018692 269 RVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE----SEIWDDLEEVL 315 (352)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~----~~~~~~l~~~l 315 (352)
. +.....++|.+-+. +.-|..+...+
T Consensus 103 ~---------------------~~~~ifIIDGivSt~r~~e~H~~Lvreim 132 (192)
T PF11868_consen 103 Y---------------------NENNIFIIDGIVSTRRSNERHWQLVREIM 132 (192)
T ss_pred c---------------------CcCcEEEEeeeeeeccCCHHHHHHHHHHH
Confidence 1 24457788887542 45566666555
No 414
>PLN02200 adenylate kinase family protein
Probab=94.57 E-value=0.032 Score=50.03 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|+|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999998876
No 415
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.57 E-value=0.058 Score=54.03 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcc-cccceEE-EEEeCCCCCHHHHHHHHHHhcCCCCccccCC
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLA-WVRVSMLHDFGKILDDIIKSVMPPARVRVII 274 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~-~~F~~~~-wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~ 274 (352)
.++++|..=. .-.-..|+|.+|+|||||++.|.+ .+. .+=++.+ .+-|.+...- + .+|.+.+.++--....+
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeE--V-tdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEE--V-TDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhh--H-HHHHHhccceEEEECCC
Confidence 4556555422 234567999999999999999988 332 2334443 3444544321 1 22333332211000001
Q ss_pred C-----CCHHHHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 275 G-----EDYQLKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 275 ~-----~~~~~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
. .....+.-.+.++| .++.+||+||++-.
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1 11122233344444 67999999999854
No 416
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.55 E-value=0.11 Score=50.87 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-..++|+|..|+|||||.+.+.+.
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCC
Confidence 3467899999999999999999873
No 417
>PRK08356 hypothetical protein; Provisional
Probab=94.55 E-value=0.031 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~ 230 (352)
..+|.|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999999994
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.54 E-value=0.18 Score=47.44 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+..++.++|.+|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999988865
No 419
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.54 E-value=0.039 Score=50.59 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHH
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDD 259 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~ 259 (352)
-.+|+..|.....+..+|+|.|.+|+||+||.-.+-..-.-+.|=-.++=|.-|.+|+--.++.+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 46788888877778899999999999999999877663322333223444455666665555443
No 420
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.52 E-value=0.032 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999974
No 421
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.51 E-value=0.026 Score=47.39 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.4
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999873
No 422
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.50 E-value=0.029 Score=51.10 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|.|-||+||||++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5788999999999999888765
No 423
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.49 E-value=0.3 Score=48.25 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=56.6
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV- 272 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~- 272 (352)
-...+-+.|...=..-.++.|.|.+|+|||||+.++..+ ....=...+|++..++ ..++... +..++.......
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~ 153 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYV 153 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEE
Confidence 345555555544344678899999999999999988653 2111124677765443 3333322 233433221110
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 273 IIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 273 ~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
....+.+.+...+.+ .+.-++|+|.+..
T Consensus 154 ~~e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 154 LSETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred cCCCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 223445555554433 2455899998853
No 424
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.49 E-value=0.031 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999977
No 425
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.48 E-value=0.033 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHccC
Q 018692 212 VAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~~ 233 (352)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999988753
No 426
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.48 E-value=0.039 Score=48.97 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-----------ccCC--
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV-----------RVII-- 274 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~-----------~~~~-- 274 (352)
.-.++.|.|.+|+|||+|+.++... ..++.=+.++||+..++ ...+.+.+- +++-.... ....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4578899999999999999875431 22220124677777554 345555543 44321111 0001
Q ss_pred ---CCCHHHHHHHHHHHcCC-ceEEEEEeCC
Q 018692 275 ---GEDYQLKKSILQDYLTN-KKYFIVLDDV 301 (352)
Q Consensus 275 ---~~~~~~l~~~l~~~L~~-kr~LlVLDdv 301 (352)
..+...+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 45778888888888765 5579999986
No 427
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.47 E-value=0.033 Score=48.71 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|+|+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998765
No 428
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.46 E-value=0.039 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..+|+++|..|+|||||.+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 429
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.46 E-value=0.033 Score=47.67 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|+|..|+|||||++.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 430
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.45 E-value=0.42 Score=48.82 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-..++|+|..|+|||||++.+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356889999999999999999875
No 431
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.45 E-value=0.03 Score=47.05 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|++|+|+.++|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 57999999999999999999876
No 432
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.43 E-value=0.11 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-..++|+|..|+|||||.+.+...
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999873
No 433
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.43 E-value=0.033 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.|+|.+|+|||||.+.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999998764
No 434
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.29 Score=51.60 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=81.7
Q ss_pred ccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC--CHHHHHHHHHHhcCCCC
Q 018692 191 FENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH--DFGKILDDIIKSVMPPA 268 (352)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~il~~i~~~l~~~~ 268 (352)
..+.+++|++.+.. -.|+.|+|..|+||||-.-+.+-+.- |...--|.+.++- ....+-..+++.++...
T Consensus 51 v~~~~~~i~~ai~~----~~vvii~getGsGKTTqlP~~lle~g----~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 51 VTAVRDEILKAIEQ----NQVVIIVGETGSGKTTQLPQFLLEEG----LGIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred cHHHHHHHHHHHHh----CCEEEEeCCCCCChHHHHHHHHHhhh----cccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 46678889998876 45899999999999998876655322 1222234455554 44678888888888764
Q ss_pred ccc---------------cCCCCCHHHHHHHHH-HHcCCceEEEEEeCCCCCchhH----HHHHhhCCCCCCCcEEEecc
Q 018692 269 RVR---------------VIIGEDYQLKKSILQ-DYLTNKKYFIVLDDVFDESEIW----DDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 269 ~~~---------------~~~~~~~~~l~~~l~-~~L~~kr~LlVLDdvw~~~~~~----~~l~~~l~~~~~gsrIivTT 328 (352)
++. ...-++...+...++ +.+=.+=-.+|+|.+-+..-.- ..++..++.-.+.-||||+|
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 430 012244455555544 3333344478999986531111 22223233222348999999
Q ss_pred ------hhhhhcCC
Q 018692 329 ------KVALHVET 336 (352)
Q Consensus 329 ------~va~~~~~ 336 (352)
+.+..++.
T Consensus 203 ATld~~rfs~~f~~ 216 (845)
T COG1643 203 ATLDAERFSAYFGN 216 (845)
T ss_pred cccCHHHHHHHcCC
Confidence 45555553
No 435
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.41 E-value=0.033 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|+|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998765
No 436
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.41 E-value=0.056 Score=50.70 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~ 230 (352)
.+++.+.|.|||||||+|-...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A 23 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATA 23 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHH
Confidence 4788999999999999998743
No 437
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.41 E-value=0.032 Score=47.20 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..|.|+|+.|+||||+++.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999987
No 438
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.41 E-value=0.031 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|+|-|||||||++..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999999888754
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.41 E-value=0.034 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.|++|+|++|+|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45899999999999999999875
No 440
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.40 E-value=0.031 Score=47.46 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.9
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|.|.|.+|+|||||.+.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999998873
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.40 E-value=0.22 Score=48.56 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeC-CCCCHHHHHHHHHHhcCCCCccc--cCCCCCH------H
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVS-MLHDFGKILDDIIKSVMPPARVR--VIIGEDY------Q 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~~~------~ 279 (352)
-..++|+|..|+|||||.+.++..... +......+. ....+.+.+...+..-+...... ...+.+. .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999874321 122222233 33566666665554432211100 0111111 1
Q ss_pred HHHHHHHHHc--CCceEEEEEeCCCC
Q 018692 280 LKKSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~l~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
.....+.+++ +++..||++||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 1222333444 47999999999966
No 442
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.40 E-value=0.023 Score=51.09 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.7
Q ss_pred EEcCCCccHHHHHHHHHcc
Q 018692 214 ILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 214 IvG~gGvGKTtLA~~v~~~ 232 (352)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999999874
No 443
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.40 E-value=0.049 Score=43.63 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=35.9
Q ss_pred CccccccccHHHHHHHHhc-----CCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIE-----GPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|-.-..+.+++.+.. .+.+.-|++..|.+|+|||.+++.+.++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 5688877666666666653 2456889999999999999988777664
No 444
>PRK14526 adenylate kinase; Provisional
Probab=94.39 E-value=0.14 Score=45.20 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
|.|+|++|+||||+++.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999875
No 445
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.39 E-value=0.21 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.100 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 446
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.38 E-value=0.032 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=18.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999998877654
No 447
>PRK06820 type III secretion system ATPase; Validated
Probab=94.37 E-value=0.12 Score=50.54 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML 250 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 250 (352)
-..++|+|..|+|||||++.+.... +-+..+...+.+.
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGer 200 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGER 200 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccC
Confidence 3478999999999999999988732 1233444455554
No 448
>PLN02796 D-glycerate 3-kinase
Probab=94.37 E-value=0.039 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..-+|+|.|..|+|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 567899999999999999999987
No 449
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.36 E-value=0.16 Score=43.20 Aligned_cols=84 Identities=10% Similarity=0.084 Sum_probs=46.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL 289 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (352)
+++.|.|.+|+||||+|..+... ... ..+++.-...++ .+..+.|............ .-+....+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~-t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQ-TVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCe-EecccccHHHHHHhhc
Confidence 36789999999999999998763 111 133444334443 3455565554333322111 1122234555555544
Q ss_pred CCceEEEEEeCC
Q 018692 290 TNKKYFIVLDDV 301 (352)
Q Consensus 290 ~~kr~LlVLDdv 301 (352)
.+.. ++++|.+
T Consensus 75 ~~~~-~VlID~L 85 (170)
T PRK05800 75 APGR-CVLVDCL 85 (170)
T ss_pred CCCC-EEEehhH
Confidence 4333 6888886
No 450
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.36 E-value=0.086 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 451
>PRK06761 hypothetical protein; Provisional
Probab=94.35 E-value=0.074 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
++|.|.|.+|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999984
No 452
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.34 E-value=0.04 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.++|++.|-|||||||.+..+..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 4689999999999999998877653
No 453
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.29 Score=46.98 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=61.0
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc
Q 018692 193 NSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV 272 (352)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~ 272 (352)
-...++-..|...--.-.++-|=|-+|+|||||.-++.. +....- .+.+|+-.+ +..++ +--+..++....+..
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~ 150 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLY 150 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceE
Confidence 344555555555423356888999999999999999988 333322 566664443 43332 222345554333211
Q ss_pred -CCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 273 -IIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 273 -~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
..+.+.+.....+.+ .+.-|+|+|.+..
T Consensus 151 l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 151 LLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred EehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 234455555555554 5788999999854
No 454
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.33 E-value=0.12 Score=43.92 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=46.7
Q ss_pred EEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCC
Q 018692 212 VAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTN 291 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~ 291 (352)
+-|.|.+|+|||++|.++... .....+++.-++.++. ++.+.|........... ...+....+...+.+. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w-~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHW-RTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCc-eEeecHHHHHHHHHhc-C-
Confidence 568999999999999988752 2235777777777765 34555444332222111 1122233444444222 2
Q ss_pred ceEEEEEeCC
Q 018692 292 KKYFIVLDDV 301 (352)
Q Consensus 292 kr~LlVLDdv 301 (352)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337999996
No 455
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.33 E-value=0.028 Score=50.82 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999876
No 456
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.30 E-value=0.038 Score=44.80 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHccC
Q 018692 211 VVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
-|+++|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 457
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.29 E-value=0.043 Score=47.24 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=46.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCccccc--------ceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc---c------
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYF--------DCLAWVRVSMLHDFGKILDDIIKSVMPPARVR---V------ 272 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~---~------ 272 (352)
.+..|.|.+|+||||++..+..+......| ..+.|++...+ ...+.+.+........... .
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 477899999999999998887643322222 24677766665 3344433333222111000 0
Q ss_pred ---------CCCCCHHHHHHHHHHHcCC--ceEEEEEeCCCC
Q 018692 273 ---------IIGEDYQLKKSILQDYLTN--KKYFIVLDDVFD 303 (352)
Q Consensus 273 ---------~~~~~~~~l~~~l~~~L~~--kr~LlVLDdvw~ 303 (352)
..........+.+.+.+.. +--++|+|.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 0001123445566666655 456999997643
No 458
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.27 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..-+-++|+.|+||||+|..+..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHH
Confidence 44577899999999999998765
No 459
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.28 E-value=0.073 Score=45.58 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...|.|+|.+|+|||||...+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345599999999999999998864
No 460
>PRK14532 adenylate kinase; Provisional
Probab=94.27 E-value=0.034 Score=47.84 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
|.++|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999986
No 461
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.26 E-value=0.034 Score=47.90 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 462
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.26 E-value=0.037 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||.+.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999763
No 463
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.24 E-value=0.039 Score=45.50 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|.++|.+|+|||||.+.+.++
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999998764
No 464
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.23 E-value=0.04 Score=55.53 Aligned_cols=45 Identities=24% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|.+..++.+...+.... ..-+-|+|.+|+|||++|+.+++
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3679999999999888776542 34556899999999999999986
No 465
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.20 E-value=0.039 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||++.++.-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 466
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.20 E-value=0.047 Score=44.57 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 467
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.19 E-value=0.041 Score=45.62 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHccC
Q 018692 212 VAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~~ 233 (352)
|.|+|.+|+|||||.+.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999987643
No 468
>PRK01184 hypothetical protein; Provisional
Probab=94.19 E-value=0.04 Score=47.21 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=17.1
Q ss_pred eEEEEEcCCCccHHHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAAD 228 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~ 228 (352)
.+|.|+|++|+||||+++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5899999999999999873
No 469
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.19 E-value=0.037 Score=46.49 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...++|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 455889999999999999999874
No 470
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.18 E-value=0.025 Score=48.68 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 471
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.17 E-value=0.039 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||.+.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 472
>PRK13695 putative NTPase; Provisional
Probab=94.17 E-value=0.041 Score=46.79 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.16 E-value=0.04 Score=47.50 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=55.7
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccC
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVI 273 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~ 273 (352)
+..+++...... -..+.|+|..|+|||||++.+.. .+...- ..+- +........-..... ++..... ..
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i~--ied~~E~~~~~~~~~-~~~~~~~--~~ 81 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA--FIPPDE-RIIT--IEDTAELQLPHPNWV-RLVTRPG--NV 81 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEEE--ECCccccCCCCCCEE-EEEEecC--CC
Confidence 344444444432 46889999999999999999886 222211 1111 111100000000000 0000000 00
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhh
Q 018692 274 IGEDYQLKKSILQDYLTNKKYFIVLDDVFDESEIWDDLEEV 314 (352)
Q Consensus 274 ~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~ 314 (352)
.........+.++..++...=.++++.+.+ .+.|.-+...
T Consensus 82 ~~~~~~~~~~~l~~~lR~~pd~i~igEir~-~ea~~~~~a~ 121 (186)
T cd01130 82 EGSGEVTMADLLRSALRMRPDRIIVGEVRG-GEALDLLQAM 121 (186)
T ss_pred CCCCccCHHHHHHHHhccCCCEEEEEccCc-HHHHHHHHHH
Confidence 111223455666677777777889999999 8887755443
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.14 E-value=0.04 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999987
No 475
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.14 E-value=0.045 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHccC
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
+-|-++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457799999999999999998743
No 476
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.076 Score=53.06 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=58.4
Q ss_pred CccccccccHHHHHHHH---hcC-C-------CCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLL---IEG-P-------SGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L---~~~-~-------~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.++.|.+..++.+.+.. ... + ...+.+-++|++|.|||.||+.+.+ ....+|-...+ .
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~-----~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG-----S---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC-----H----
Confidence 55666665555544443 321 1 3456788999999999999999999 55555533321 1
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
. ++... -......+...+....+...+.|.+|.+..
T Consensus 311 ~----l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 311 E----LLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred H----Hhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 1 11111 123345555666666677899999999854
No 477
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.12 E-value=0.039 Score=46.71 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+-|.++||.|+||||+.+.+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH
Confidence 3477899999999999999976
No 478
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.12 E-value=0.038 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-++.|+|+|..|+|||||++.+...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35788999999999999999998873
No 479
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.11 E-value=0.042 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 480
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.11 E-value=0.06 Score=51.72 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
+.-+|+|+|..|+|||||+..+.. ..+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~~ 33 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR--RLSERF 33 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH--HHhhCc
Confidence 357999999999999999999987 444443
No 481
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.09 E-value=0.041 Score=41.04 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 482
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.08 E-value=0.045 Score=45.33 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|.++|.+|+|||||.+.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999865
No 483
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.08 E-value=0.12 Score=49.50 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=59.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccc--eEEEEEeCCC--CCHHHHHH--HHHHhcCCCCcc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CLAWVRVSML--HDFGKILD--DIIKSVMPPARV 270 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~--~~~~~il~--~i~~~l~~~~~~ 270 (352)
.+.+.+.. .-+.|.|+|..|+||||+++.+.+ .+....+ .++ +.+..+ +....+.. ..+.|..
T Consensus 125 ~~~~~~~~---~~glilI~GpTGSGKTTtL~aLl~--~i~~~~~~~~~I-vt~EdpiE~~~~~~~~~~~~v~Q~~----- 193 (358)
T TIGR02524 125 AIIDAIAP---QEGIVFITGATGSGKSTLLAAIIR--ELAEAPDSHRKI-LTYEAPIEFVYDEIETISASVCQSE----- 193 (358)
T ss_pred HHHHHHhc---cCCEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCcEE-EEeCCCceEeccccccccceeeeee-----
Confidence 35555543 247999999999999999999876 2222111 111 112221 11111000 0000100
Q ss_pred ccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 271 RVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 271 ~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...+.......++..|+...-.+++..+.+ .+.......+.. .|-. ++||
T Consensus 194 ---v~~~~~~~~~~l~~aLR~~Pd~i~vGEiRd-~et~~~al~aa~---tGh~-v~tT 243 (358)
T TIGR02524 194 ---IPRHLNNFAAGVRNALRRKPHAILVGEARD-AETISAALEAAL---TGHP-VYTT 243 (358)
T ss_pred ---ccccccCHHHHHHHHhccCCCEEeeeeeCC-HHHHHHHHHHHH---cCCc-EEEe
Confidence 011223456667778888888999999888 666544333332 2332 5666
No 484
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.08 E-value=0.052 Score=44.62 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998764
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.045 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 486
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.06 E-value=0.1 Score=53.58 Aligned_cols=74 Identities=9% Similarity=-0.036 Sum_probs=53.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcc-cccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
+.++|.++.++.|...+... +.+-++|.+|+||||+|+.+.+ .+. .+|+..+|..-+. -+...+++.+...+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~np~-~~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPNPE-DPNNPKIRTVPAGK 103 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeCCC-cchHHHHHHHHHhc
Confidence 78999888888887777653 3578899999999999999987 333 3457778875533 35566666666555
Q ss_pred CC
Q 018692 265 MP 266 (352)
Q Consensus 265 ~~ 266 (352)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 43
No 487
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.048 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.. .+++|+|..|+|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999763
No 488
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.04 E-value=0.042 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|+|-|||||||++..+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998887654
No 489
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.03 E-value=0.078 Score=48.65 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=65.1
Q ss_pred CccccccccHHHHHHHHhcC-----CCCceEEEEEcCCCccHHHHHHHHHccCCc---ccccceEEEEEeCCCCCHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-----PSGLSVVAILDSSGFDKTAFAADTYNNNHV---KFYFDCLAWVRVSMLHDFGKIL 257 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~---~~~F~~~~wv~vs~~~~~~~il 257 (352)
..++|..-.++.++..+.+- +.+.-+++..|..|+||.-.++.+.++--. ++.|-.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~---------------- 145 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH---------------- 145 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH----------------
Confidence 45788777778888877642 456889999999999999999988875211 111211
Q ss_pred HHHHHhcCCCCccccCCCCCHH----HHHHHHHHHcC-CceEEEEEeCCCCC-chhHHHHHhhCC
Q 018692 258 DDIIKSVMPPARVRVIIGEDYQ----LKKSILQDYLT-NKKYFIVLDDVFDE-SEIWDDLEEVLP 316 (352)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~----~l~~~l~~~L~-~kr~LlVLDdvw~~-~~~~~~l~~~l~ 316 (352)
.......- +.....+ ++...++..++ .+|-|.|+|++... +.-.+.|...+.
T Consensus 146 -~fvat~hF------P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 146 -HFVATLHF------PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred -HhhhhccC------CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 00000000 1122223 33344444443 38999999999876 555566655443
No 490
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.03 E-value=0.046 Score=45.60 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|.++|.+|+|||||+..+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999887654
No 491
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.02 E-value=0.18 Score=45.90 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|+|.|.+|+||||+++.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998775
No 492
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.01 E-value=0.038 Score=47.33 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 493
>PRK14529 adenylate kinase; Provisional
Probab=94.00 E-value=0.16 Score=45.09 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=44.0
Q ss_pred EEEEcCCCccHHHHHHHHHccCCcccccceEEEE--EeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWV--RVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL 289 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv--~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L 289 (352)
|.|.|++|+||||+++.+....... +++..-.+ .+..........++++.+-. --+.+-....+.+.|
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~---------lvpdei~~~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD---------LVPDDITIPMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC---------cchHHHHHHHHHHHH
Confidence 7789999999999999887632211 22211111 12222223334444443211 112244455566666
Q ss_pred CC-ceEEEEEeCCCCC
Q 018692 290 TN-KKYFIVLDDVFDE 304 (352)
Q Consensus 290 ~~-kr~LlVLDdvw~~ 304 (352)
.. ..-=+|||+.-..
T Consensus 73 ~~~~~~g~iLDGfPRt 88 (223)
T PRK14529 73 KQDGKNGWLLDGFPRN 88 (223)
T ss_pred hccCCCcEEEeCCCCC
Confidence 43 1345899998653
No 494
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.99 E-value=0.044 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|+|-|||||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999987654
No 495
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.99 E-value=0.54 Score=45.42 Aligned_cols=71 Identities=18% Similarity=0.052 Sum_probs=44.9
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC--CHHHHHHHHHHhcC
Q 018692 195 GEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH--DFGKILDDIIKSVM 265 (352)
Q Consensus 195 ~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~il~~i~~~l~ 265 (352)
.++|+++|... ...+.||-.||.-|+||||-+-.+.+ ..+. .....-+.....+ ..-+-|+.+..+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 67888888742 13478999999999999999887766 3333 3333333333333 33445666666666
Q ss_pred CCC
Q 018692 266 PPA 268 (352)
Q Consensus 266 ~~~ 268 (352)
.+-
T Consensus 156 v~~ 158 (451)
T COG0541 156 VPF 158 (451)
T ss_pred Cce
Confidence 543
No 496
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.045 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 497
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.98 E-value=0.047 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|+.|+|||||...+..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 498
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=93.98 E-value=0.17 Score=49.78 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=33.6
Q ss_pred CccccccccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|.....+++.+.+..- .....+ -|.|..|+||+++|+.++..
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~v-li~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITV-LLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCE-EEECCCCcCHHHHHHHHHHh
Confidence 45788777777777766532 223444 49999999999999999873
No 499
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=93.97 E-value=0.046 Score=44.38 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.|+|.+|+|||||...+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3689999999999999998764
No 500
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=93.95 E-value=0.28 Score=41.35 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHH-HHHHHHc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTA-FAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTt-LA~~v~~ 231 (352)
..+++..+.... +.+.|.|..|+|||+ ++..++.
T Consensus 13 Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 13 QKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred HHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHH
Confidence 344555554421 678899999999999 5566665
Done!