Query 018692
Match_columns 352
No_of_seqs 240 out of 2151
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 04:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 5.1E-25 1.8E-29 220.2 15.9 153 189-349 131-295 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 5.3E-21 1.8E-25 207.1 12.4 154 186-348 124-287 (1249)
3 1vt4_I APAF-1 related killer D 99.8 3E-21 1E-25 199.8 8.5 140 186-334 128-281 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 1.2E-18 4E-23 175.5 12.4 141 186-335 124-274 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 1.1E-16 3.7E-21 126.3 6.4 82 30-125 1-84 (115)
6 1w5s_A Origin recognition comp 99.2 6.4E-11 2.2E-15 113.2 9.6 113 186-303 22-149 (412)
7 2qby_B CDC6 homolog 3, cell di 99.0 6.2E-10 2.1E-14 105.3 9.0 137 186-328 20-171 (384)
8 2v1u_A Cell division control p 99.0 2.1E-09 7.2E-14 101.5 10.7 113 186-303 19-141 (387)
9 1fnn_A CDC6P, cell division co 99.0 4.2E-09 1.4E-13 99.6 12.8 138 186-328 17-166 (389)
10 2qen_A Walker-type ATPase; unk 98.9 2.2E-09 7.6E-14 99.9 8.0 130 186-328 12-171 (350)
11 2qby_A CDC6 homolog 1, cell di 98.9 2E-09 7E-14 101.4 6.3 138 186-328 20-170 (386)
12 1njg_A DNA polymerase III subu 98.9 9.3E-09 3.2E-13 90.0 9.8 134 186-328 23-163 (250)
13 2chg_A Replication factor C sm 98.8 1.7E-08 5.9E-13 87.2 11.3 120 186-328 17-139 (226)
14 2fna_A Conserved hypothetical 98.7 2E-08 6.9E-13 93.5 8.4 130 186-328 13-177 (357)
15 1sxj_B Activator 1 37 kDa subu 98.6 4E-08 1.4E-12 90.4 7.3 120 186-328 21-144 (323)
16 3te6_A Regulatory protein SIR3 98.4 1E-06 3.4E-11 81.3 9.9 113 187-303 21-143 (318)
17 1jbk_A CLPB protein; beta barr 98.4 3.1E-07 1.1E-11 77.2 5.0 44 186-231 22-65 (195)
18 1iqp_A RFCS; clamp loader, ext 98.3 3.2E-07 1.1E-11 84.4 5.2 119 184-328 23-147 (327)
19 2chq_A Replication factor C sm 98.2 2.4E-06 8.3E-11 78.2 6.7 117 186-328 17-139 (319)
20 1jr3_A DNA polymerase III subu 98.1 1.1E-05 3.7E-10 75.6 10.4 135 186-328 16-156 (373)
21 2w58_A DNAI, primosome compone 98.0 5.2E-06 1.8E-10 71.1 6.0 96 186-303 25-126 (202)
22 3h4m_A Proteasome-activating n 98.0 4.8E-06 1.6E-10 75.3 6.0 47 186-232 17-74 (285)
23 3ec2_A DNA replication protein 98.0 4.9E-06 1.7E-10 70.0 5.2 99 209-328 38-140 (180)
24 3n70_A Transport activator; si 98.0 9.1E-06 3.1E-10 66.0 6.5 110 187-328 2-113 (145)
25 3syl_A Protein CBBX; photosynt 98.0 8.1E-06 2.8E-10 74.6 6.4 122 187-328 32-176 (309)
26 1hqc_A RUVB; extended AAA-ATPa 97.9 1.5E-05 5E-10 73.3 7.6 46 186-231 12-60 (324)
27 1sxj_E Activator 1 40 kDa subu 97.9 3.3E-05 1.1E-09 71.9 10.0 45 185-231 13-58 (354)
28 3co5_A Putative two-component 97.8 1.1E-05 3.7E-10 65.4 4.2 46 187-232 5-50 (143)
29 3u61_B DNA polymerase accessor 97.8 4.2E-05 1.4E-09 70.4 8.3 118 184-328 24-143 (324)
30 1sxj_D Activator 1 41 kDa subu 97.8 1.5E-05 5E-10 74.1 5.0 133 185-328 36-170 (353)
31 2qz4_A Paraplegin; AAA+, SPG7, 97.8 6.1E-05 2.1E-09 66.8 8.0 46 186-231 6-61 (262)
32 3pfi_A Holliday junction ATP-d 97.7 7.8E-05 2.7E-09 69.0 8.9 47 185-231 28-77 (338)
33 1d2n_A N-ethylmaleimide-sensit 97.7 0.00013 4.5E-09 65.3 9.2 47 186-232 33-87 (272)
34 3eie_A Vacuolar protein sortin 97.7 0.00013 4.4E-09 67.3 8.8 46 186-231 18-73 (322)
35 3uk6_A RUVB-like 2; hexameric 97.6 0.00047 1.6E-08 64.3 12.6 47 186-232 44-93 (368)
36 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.0003 1E-08 64.9 10.9 47 186-232 12-68 (322)
37 2z4s_A Chromosomal replication 97.6 5.4E-05 1.8E-09 73.1 5.7 121 186-328 105-234 (440)
38 1sxj_C Activator 1 40 kDa subu 97.6 0.00012 4E-09 68.0 7.6 44 186-231 25-68 (340)
39 3vfd_A Spastin; ATPase, microt 97.6 0.00039 1.3E-08 65.8 11.4 47 185-231 114-170 (389)
40 2gno_A DNA polymerase III, gam 97.6 0.00016 5.5E-09 66.3 8.1 115 190-328 1-119 (305)
41 1l8q_A Chromosomal replication 97.6 8.3E-05 2.9E-09 68.5 6.1 121 186-328 11-138 (324)
42 2zan_A Vacuolar protein sortin 97.6 0.0004 1.4E-08 67.0 11.0 47 186-232 134-190 (444)
43 3d8b_A Fidgetin-like protein 1 97.5 0.0001 3.4E-09 69.1 6.3 46 186-231 84-139 (357)
44 2p65_A Hypothetical protein PF 97.5 5.6E-05 1.9E-09 63.0 4.0 44 186-231 22-65 (187)
45 3pvs_A Replication-associated 97.5 8.2E-05 2.8E-09 71.9 5.6 44 186-231 26-72 (447)
46 1sxj_A Activator 1 95 kDa subu 97.5 0.00022 7.5E-09 70.2 7.9 48 185-232 38-100 (516)
47 2bjv_A PSP operon transcriptio 97.4 8.1E-05 2.8E-09 66.5 4.1 47 186-232 6-52 (265)
48 1a5t_A Delta prime, HOLB; zinc 97.4 0.00078 2.7E-08 62.4 10.5 132 192-349 8-169 (334)
49 2qp9_X Vacuolar protein sortin 97.4 0.00038 1.3E-08 65.1 8.0 46 186-231 51-106 (355)
50 4fcw_A Chaperone protein CLPB; 97.4 7.4E-05 2.5E-09 68.1 3.1 46 186-231 17-69 (311)
51 1lv7_A FTSH; alpha/beta domain 97.4 0.00037 1.3E-08 61.8 7.5 47 185-231 11-67 (257)
52 3b9p_A CG5977-PA, isoform A; A 97.4 0.0004 1.4E-08 62.9 7.8 46 186-231 21-76 (297)
53 3cf0_A Transitional endoplasmi 97.4 0.00049 1.7E-08 62.7 8.4 94 186-303 15-119 (301)
54 3hu3_A Transitional endoplasmi 97.3 0.00033 1.1E-08 68.4 7.6 92 186-301 204-306 (489)
55 3pxg_A Negative regulator of g 97.3 0.00025 8.4E-09 69.0 6.5 44 186-231 180-223 (468)
56 2cvh_A DNA repair and recombin 97.3 0.0015 5E-08 56.0 10.8 89 209-303 20-116 (220)
57 1ojl_A Transcriptional regulat 97.3 0.00098 3.3E-08 60.9 9.3 46 187-232 3-48 (304)
58 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00044 1.5E-08 63.5 5.6 69 209-303 123-193 (331)
59 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0025 8.5E-08 65.6 12.0 44 186-231 186-229 (758)
60 2kjq_A DNAA-related protein; s 97.1 0.00023 7.9E-09 58.0 2.8 34 197-232 26-59 (149)
61 2ce7_A Cell division protein F 97.0 0.00088 3E-08 65.1 6.9 94 186-303 16-119 (476)
62 2qgz_A Helicase loader, putati 97.0 0.00019 6.5E-09 65.8 1.6 38 194-231 136-174 (308)
63 1qvr_A CLPB protein; coiled co 97.0 0.00077 2.6E-08 70.4 6.4 44 186-231 170-213 (854)
64 3pxi_A Negative regulator of g 96.9 0.00091 3.1E-08 68.9 6.4 44 186-231 180-223 (758)
65 3pxi_A Negative regulator of g 96.9 0.0011 3.8E-08 68.3 6.6 46 186-231 491-543 (758)
66 3hr8_A Protein RECA; alpha and 96.8 0.0032 1.1E-07 58.7 8.3 89 208-303 60-150 (356)
67 3m6a_A ATP-dependent protease 96.8 0.0024 8.3E-08 63.1 7.7 46 186-231 81-130 (543)
68 2c9o_A RUVB-like 1; hexameric 96.8 0.0022 7.6E-08 61.9 7.3 47 186-232 37-86 (456)
69 3e70_C DPA, signal recognition 96.8 0.017 5.8E-07 53.2 13.0 25 207-231 127-151 (328)
70 3bos_A Putative DNA replicatio 96.8 0.0015 5.1E-08 56.6 5.4 59 186-248 28-89 (242)
71 3t15_A Ribulose bisphosphate c 96.8 0.0025 8.6E-08 57.8 7.1 24 208-231 35-58 (293)
72 1ypw_A Transitional endoplasmi 96.7 0.0013 4.5E-08 68.1 5.6 52 186-239 204-266 (806)
73 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0034 1.2E-07 54.0 7.3 115 209-328 23-165 (235)
74 2zr9_A Protein RECA, recombina 96.7 0.0042 1.4E-07 57.8 8.3 89 208-303 60-150 (349)
75 1v5w_A DMC1, meiotic recombina 96.7 0.01 3.5E-07 55.0 10.8 95 208-303 121-230 (343)
76 4a74_A DNA repair and recombin 96.7 0.0046 1.6E-07 53.2 7.9 55 209-264 25-83 (231)
77 1n0w_A DNA repair protein RAD5 96.7 0.006 2E-07 53.0 8.7 94 209-303 24-130 (243)
78 3c8u_A Fructokinase; YP_612366 96.6 0.0016 5.3E-08 55.9 4.6 37 195-231 8-44 (208)
79 1xp8_A RECA protein, recombina 96.6 0.0058 2E-07 57.2 8.6 88 209-303 74-163 (366)
80 4b4t_M 26S protease regulatory 96.6 0.0014 4.7E-08 62.8 4.4 46 186-231 181-237 (434)
81 4b4t_K 26S protease regulatory 96.6 0.0021 7E-08 61.5 5.5 93 186-302 172-275 (428)
82 2i1q_A DNA repair and recombin 96.6 0.0052 1.8E-07 56.3 8.1 95 208-303 97-215 (322)
83 4b4t_L 26S protease subunit RP 96.6 0.0022 7.6E-08 61.4 5.7 46 186-231 181-237 (437)
84 4b4t_J 26S protease regulatory 96.6 0.0017 5.9E-08 61.4 4.8 94 186-303 148-252 (405)
85 2z43_A DNA repair and recombin 96.5 0.0051 1.7E-07 56.6 7.6 94 209-303 107-214 (324)
86 4b4t_H 26S protease regulatory 96.5 0.0022 7.5E-08 61.6 5.2 94 186-303 209-313 (467)
87 1u94_A RECA protein, recombina 96.5 0.0048 1.7E-07 57.6 7.2 88 209-303 63-152 (356)
88 3cf2_A TER ATPase, transitiona 96.5 0.0076 2.6E-07 62.1 9.1 94 186-303 204-308 (806)
89 1rz3_A Hypothetical protein rb 96.5 0.0025 8.4E-08 54.3 4.7 41 191-231 3-44 (201)
90 1qvr_A CLPB protein; coiled co 96.4 0.0032 1.1E-07 65.7 6.1 131 186-328 558-708 (854)
91 3io5_A Recombination and repai 96.4 0.016 5.4E-07 53.0 9.7 87 210-303 29-122 (333)
92 3lw7_A Adenylate kinase relate 96.4 0.0017 5.9E-08 53.1 3.0 102 210-328 2-110 (179)
93 1odf_A YGR205W, hypothetical 3 96.3 0.0041 1.4E-07 56.4 5.3 26 206-231 28-53 (290)
94 1in4_A RUVB, holliday junction 96.2 0.0022 7.4E-08 59.3 3.3 46 186-231 25-73 (334)
95 1ofh_A ATP-dependent HSL prote 96.2 0.0019 6.4E-08 58.4 2.8 46 186-231 15-72 (310)
96 3kb2_A SPBC2 prophage-derived 96.2 0.0023 7.7E-08 52.5 3.0 22 210-231 2-23 (173)
97 1vma_A Cell division protein F 96.2 0.014 5E-07 53.1 8.3 37 195-231 84-126 (306)
98 1zp6_A Hypothetical protein AT 96.2 0.0033 1.1E-07 52.6 3.7 24 209-232 9-32 (191)
99 4b4t_I 26S protease regulatory 96.1 0.0043 1.5E-07 59.1 4.7 52 186-239 182-244 (437)
100 1qhx_A CPT, protein (chloramph 96.1 0.0025 8.6E-08 52.7 2.8 22 210-231 4-25 (178)
101 1pzn_A RAD51, DNA repair and r 96.1 0.016 5.6E-07 53.8 8.7 95 208-303 130-242 (349)
102 3vaa_A Shikimate kinase, SK; s 96.1 0.003 1E-07 53.6 3.2 23 209-231 25-47 (199)
103 1ly1_A Polynucleotide kinase; 96.0 0.0035 1.2E-07 51.8 3.3 22 210-231 3-24 (181)
104 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0049 1.7E-07 63.4 4.9 46 186-231 458-510 (758)
105 2b8t_A Thymidine kinase; deoxy 96.0 0.0027 9.2E-08 55.3 2.5 110 209-328 12-123 (223)
106 2r62_A Cell division protease 96.0 0.0027 9.3E-08 56.4 2.5 47 186-232 11-67 (268)
107 1kgd_A CASK, peripheral plasma 96.0 0.0036 1.2E-07 52.3 3.0 23 209-231 5-27 (180)
108 1kag_A SKI, shikimate kinase I 96.0 0.0029 9.9E-08 52.1 2.4 22 210-231 5-26 (173)
109 1knq_A Gluconate kinase; ALFA/ 95.9 0.0054 1.8E-07 50.6 4.0 24 208-231 7-30 (175)
110 3hws_A ATP-dependent CLP prote 95.9 0.0044 1.5E-07 57.8 3.8 45 187-231 16-73 (363)
111 2x8a_A Nuclear valosin-contain 95.9 0.0042 1.4E-07 55.7 3.4 46 186-232 10-67 (274)
112 2px0_A Flagellar biosynthesis 95.9 0.069 2.3E-06 48.3 11.6 24 208-231 104-127 (296)
113 1nks_A Adenylate kinase; therm 95.9 0.0044 1.5E-07 51.7 3.3 22 210-231 2-23 (194)
114 3uie_A Adenylyl-sulfate kinase 95.9 0.0048 1.7E-07 52.3 3.6 24 208-231 24-47 (200)
115 1fx0_B ATP synthase beta chain 95.8 0.021 7E-07 55.3 8.0 105 197-303 154-277 (498)
116 3trf_A Shikimate kinase, SK; a 95.8 0.0046 1.6E-07 51.5 3.0 23 209-231 5-27 (185)
117 2rhm_A Putative kinase; P-loop 95.8 0.0057 1.9E-07 51.1 3.5 23 209-231 5-27 (193)
118 3tr0_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 52.0 3.2 22 210-231 8-29 (205)
119 2jaq_A Deoxyguanosine kinase; 95.7 0.0049 1.7E-07 52.0 3.0 21 211-231 2-22 (205)
120 3t61_A Gluconokinase; PSI-biol 95.7 0.0039 1.3E-07 52.9 2.3 23 209-231 18-40 (202)
121 2if2_A Dephospho-COA kinase; a 95.7 0.005 1.7E-07 52.2 3.0 22 210-231 2-23 (204)
122 3kl4_A SRP54, signal recogniti 95.7 0.031 1.1E-06 53.4 8.8 37 195-231 76-119 (433)
123 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0081 2.8E-07 55.8 4.6 43 189-231 2-46 (359)
124 4gp7_A Metallophosphoesterase; 95.7 0.0053 1.8E-07 50.8 3.0 23 209-231 9-31 (171)
125 4eun_A Thermoresistant glucoki 95.7 0.0056 1.9E-07 51.9 3.2 24 208-231 28-51 (200)
126 2dhr_A FTSH; AAA+ protein, hex 95.7 0.013 4.5E-07 57.1 6.3 48 185-232 30-87 (499)
127 1uf9_A TT1252 protein; P-loop, 95.7 0.0064 2.2E-07 51.2 3.6 25 207-231 6-30 (203)
128 3asz_A Uridine kinase; cytidin 95.7 0.0063 2.2E-07 51.8 3.5 24 208-231 5-28 (211)
129 1kht_A Adenylate kinase; phosp 95.7 0.0054 1.8E-07 51.1 3.0 22 210-231 4-25 (192)
130 3lda_A DNA repair protein RAD5 95.7 0.04 1.4E-06 52.1 9.3 94 209-303 178-284 (400)
131 2bdt_A BH3686; alpha-beta prot 95.7 0.0063 2.2E-07 50.9 3.4 22 210-231 3-24 (189)
132 2qt1_A Nicotinamide riboside k 95.6 0.0067 2.3E-07 51.6 3.5 25 207-231 19-43 (207)
133 1ye8_A Protein THEP1, hypothet 95.6 0.0063 2.2E-07 50.9 3.1 22 211-232 2-23 (178)
134 2j41_A Guanylate kinase; GMP, 95.6 0.0068 2.3E-07 51.3 3.3 23 209-231 6-28 (207)
135 1ixz_A ATP-dependent metallopr 95.6 0.0063 2.1E-07 53.6 3.2 46 186-232 16-72 (254)
136 1zuh_A Shikimate kinase; alpha 95.6 0.0062 2.1E-07 49.9 3.0 24 208-231 6-29 (168)
137 1gvn_B Zeta; postsegregational 95.6 0.012 4.2E-07 53.1 5.2 38 194-231 15-55 (287)
138 2qor_A Guanylate kinase; phosp 95.6 0.0058 2E-07 52.0 2.8 24 208-231 11-34 (204)
139 3dm5_A SRP54, signal recogniti 95.6 0.038 1.3E-06 52.9 8.7 24 208-231 99-122 (443)
140 2ze6_A Isopentenyl transferase 95.6 0.007 2.4E-07 53.6 3.4 22 210-231 2-23 (253)
141 1uj2_A Uridine-cytidine kinase 95.6 0.0073 2.5E-07 53.3 3.5 25 207-231 20-44 (252)
142 1cke_A CK, MSSA, protein (cyti 95.6 0.0065 2.2E-07 52.3 3.1 22 210-231 6-27 (227)
143 2p5t_B PEZT; postsegregational 95.5 0.0086 3E-07 52.9 3.9 40 192-231 12-54 (253)
144 1tev_A UMP-CMP kinase; ploop, 95.5 0.0075 2.6E-07 50.4 3.4 23 209-231 3-25 (196)
145 1ukz_A Uridylate kinase; trans 95.5 0.008 2.7E-07 50.9 3.6 25 207-231 13-37 (203)
146 1jjv_A Dephospho-COA kinase; P 95.5 0.0075 2.6E-07 51.2 3.4 22 210-231 3-24 (206)
147 3tau_A Guanylate kinase, GMP k 95.5 0.0075 2.6E-07 51.6 3.4 23 209-231 8-30 (208)
148 2xxa_A Signal recognition part 95.5 0.067 2.3E-06 51.2 10.3 37 195-231 79-122 (433)
149 3iij_A Coilin-interacting nucl 95.5 0.0059 2E-07 50.7 2.6 23 209-231 11-33 (180)
150 1via_A Shikimate kinase; struc 95.5 0.0055 1.9E-07 50.6 2.4 22 210-231 5-26 (175)
151 3a00_A Guanylate kinase, GMP k 95.5 0.0056 1.9E-07 51.3 2.5 22 210-231 2-23 (186)
152 2c95_A Adenylate kinase 1; tra 95.5 0.0076 2.6E-07 50.5 3.3 23 209-231 9-31 (196)
153 2bbw_A Adenylate kinase 4, AK4 95.5 0.0077 2.6E-07 52.8 3.4 23 209-231 27-49 (246)
154 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0081 2.8E-07 53.3 3.5 23 209-231 4-26 (260)
155 2r44_A Uncharacterized protein 95.5 0.0077 2.6E-07 55.2 3.4 42 186-231 27-68 (331)
156 2ck3_D ATP synthase subunit be 95.5 0.016 5.3E-07 55.9 5.6 105 197-303 142-264 (482)
157 1j8m_F SRP54, signal recogniti 95.5 0.066 2.3E-06 48.5 9.6 23 209-231 98-120 (297)
158 1y63_A LMAJ004144AAA protein; 95.5 0.0082 2.8E-07 50.2 3.3 24 208-231 9-32 (184)
159 3fwy_A Light-independent proto 95.5 0.0084 2.9E-07 55.0 3.6 24 208-231 47-70 (314)
160 2hf9_A Probable hydrogenase ni 95.5 0.011 3.9E-07 50.6 4.3 36 195-232 26-61 (226)
161 3cm0_A Adenylate kinase; ATP-b 95.4 0.0085 2.9E-07 49.8 3.3 23 209-231 4-26 (186)
162 1lvg_A Guanylate kinase, GMP k 95.4 0.0066 2.3E-07 51.6 2.6 22 210-231 5-26 (198)
163 2yvu_A Probable adenylyl-sulfa 95.4 0.0099 3.4E-07 49.6 3.6 24 208-231 12-35 (186)
164 1iy2_A ATP-dependent metallopr 95.4 0.0082 2.8E-07 53.7 3.2 46 186-232 40-96 (278)
165 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.015 5.1E-07 56.8 5.2 42 187-232 23-64 (500)
166 1sky_E F1-ATPase, F1-ATP synth 95.3 0.028 9.4E-07 54.2 6.9 62 198-262 141-204 (473)
167 2plr_A DTMP kinase, probable t 95.3 0.0093 3.2E-07 50.5 3.3 23 209-231 4-26 (213)
168 1g8p_A Magnesium-chelatase 38 95.3 0.0088 3E-07 55.0 3.3 45 186-232 24-68 (350)
169 2vli_A Antibiotic resistance p 95.3 0.0068 2.3E-07 50.2 2.3 23 209-231 5-27 (183)
170 2ffh_A Protein (FFH); SRP54, s 95.3 0.048 1.6E-06 52.0 8.5 24 208-231 97-120 (425)
171 2iyv_A Shikimate kinase, SK; t 95.3 0.0064 2.2E-07 50.6 2.1 22 210-231 3-24 (184)
172 2bwj_A Adenylate kinase 5; pho 95.3 0.0086 3E-07 50.3 3.0 23 209-231 12-34 (199)
173 3aez_A Pantothenate kinase; tr 95.3 0.011 3.7E-07 54.1 3.8 25 207-231 88-112 (312)
174 1znw_A Guanylate kinase, GMP k 95.3 0.0092 3.2E-07 50.9 3.2 23 209-231 20-42 (207)
175 2pt5_A Shikimate kinase, SK; a 95.3 0.0092 3.1E-07 48.7 3.0 21 211-231 2-22 (168)
176 3jvv_A Twitching mobility prot 95.3 0.0029 9.9E-08 59.1 -0.1 104 209-328 123-228 (356)
177 1qf9_A UMP/CMP kinase, protein 95.3 0.01 3.4E-07 49.5 3.3 23 209-231 6-28 (194)
178 1xjc_A MOBB protein homolog; s 95.3 0.0098 3.3E-07 49.3 3.1 24 208-231 3-26 (169)
179 2wsm_A Hydrogenase expression/ 95.3 0.011 3.9E-07 50.5 3.7 41 190-232 13-53 (221)
180 1e6c_A Shikimate kinase; phosp 95.3 0.0076 2.6E-07 49.4 2.4 22 210-231 3-24 (173)
181 3tlx_A Adenylate kinase 2; str 95.3 0.012 4.1E-07 51.6 3.9 25 207-231 27-51 (243)
182 2pbr_A DTMP kinase, thymidylat 95.2 0.0093 3.2E-07 49.8 3.0 21 211-231 2-22 (195)
183 3p32_A Probable GTPase RV1496/ 95.2 0.017 5.7E-07 53.8 4.8 37 195-231 65-101 (355)
184 1um8_A ATP-dependent CLP prote 95.2 0.013 4.3E-07 54.9 4.0 46 186-231 21-94 (376)
185 2cdn_A Adenylate kinase; phosp 95.2 0.012 4.1E-07 49.7 3.5 24 208-231 19-42 (201)
186 4e22_A Cytidylate kinase; P-lo 95.2 0.011 3.7E-07 52.3 3.2 23 209-231 27-49 (252)
187 3tqc_A Pantothenate kinase; bi 95.1 0.019 6.4E-07 52.8 4.9 25 207-231 90-114 (321)
188 2jeo_A Uridine-cytidine kinase 95.1 0.013 4.6E-07 51.3 3.7 24 208-231 24-47 (245)
189 3b9q_A Chloroplast SRP recepto 95.1 0.02 6.8E-07 52.1 4.9 24 208-231 99-122 (302)
190 1zu4_A FTSY; GTPase, signal re 95.1 0.024 8.2E-07 52.0 5.5 24 208-231 104-127 (320)
191 1gtv_A TMK, thymidylate kinase 95.1 0.0062 2.1E-07 51.9 1.4 22 210-231 1-22 (214)
192 1z6g_A Guanylate kinase; struc 95.1 0.0094 3.2E-07 51.4 2.5 23 209-231 23-45 (218)
193 1nn5_A Similar to deoxythymidy 95.1 0.013 4.3E-07 49.9 3.3 23 209-231 9-31 (215)
194 1htw_A HI0065; nucleotide-bind 95.0 0.014 4.8E-07 47.8 3.4 23 209-231 33-55 (158)
195 3umf_A Adenylate kinase; rossm 95.0 0.015 5.1E-07 50.3 3.6 25 207-231 27-51 (217)
196 1aky_A Adenylate kinase; ATP:A 95.0 0.013 4.5E-07 50.3 3.2 23 209-231 4-26 (220)
197 1ex7_A Guanylate kinase; subst 95.0 0.0082 2.8E-07 50.6 1.9 22 210-231 2-23 (186)
198 1zd8_A GTP:AMP phosphotransfer 95.0 0.012 4.1E-07 50.8 3.0 23 209-231 7-29 (227)
199 2wwf_A Thymidilate kinase, put 95.0 0.013 4.5E-07 49.7 3.1 23 209-231 10-32 (212)
200 2grj_A Dephospho-COA kinase; T 95.0 0.014 4.8E-07 49.4 3.2 24 208-231 11-34 (192)
201 2f1r_A Molybdopterin-guanine d 95.0 0.0089 3E-07 49.7 2.0 22 210-231 3-24 (171)
202 3ney_A 55 kDa erythrocyte memb 94.9 0.013 4.5E-07 49.8 3.0 24 208-231 18-41 (197)
203 1g5t_A COB(I)alamin adenosyltr 94.9 0.023 8E-07 48.1 4.5 48 281-328 108-160 (196)
204 2f6r_A COA synthase, bifunctio 94.9 0.016 5.4E-07 52.1 3.7 25 207-231 73-97 (281)
205 1vht_A Dephospho-COA kinase; s 94.9 0.017 5.8E-07 49.5 3.7 23 209-231 4-26 (218)
206 2pez_A Bifunctional 3'-phospho 94.9 0.016 5.3E-07 48.0 3.3 23 209-231 5-27 (179)
207 2v54_A DTMP kinase, thymidylat 94.8 0.014 4.9E-07 49.2 3.0 23 209-231 4-26 (204)
208 1zak_A Adenylate kinase; ATP:A 94.8 0.013 4.3E-07 50.5 2.7 23 209-231 5-27 (222)
209 2og2_A Putative signal recogni 94.8 0.027 9.2E-07 52.5 5.1 24 208-231 156-179 (359)
210 2ehv_A Hypothetical protein PH 94.8 0.015 5.2E-07 50.5 3.2 22 209-230 30-51 (251)
211 1s96_A Guanylate kinase, GMP k 94.8 0.015 5.2E-07 50.3 3.1 25 208-232 15-39 (219)
212 1rj9_A FTSY, signal recognitio 94.8 0.015 5.3E-07 52.9 3.3 24 208-231 101-124 (304)
213 1m7g_A Adenylylsulfate kinase; 94.8 0.018 6.2E-07 49.2 3.5 23 209-231 25-47 (211)
214 2z0h_A DTMP kinase, thymidylat 94.8 0.016 5.3E-07 48.6 3.0 21 211-231 2-22 (197)
215 2j37_W Signal recognition part 94.7 0.12 4E-06 50.5 9.4 37 195-231 80-123 (504)
216 3fb4_A Adenylate kinase; psych 94.7 0.016 5.3E-07 49.5 3.0 21 211-231 2-22 (216)
217 2onk_A Molybdate/tungstate ABC 94.7 0.017 5.9E-07 50.7 3.3 22 210-231 25-46 (240)
218 3tif_A Uncharacterized ABC tra 94.7 0.016 5.3E-07 50.7 2.9 23 209-231 31-53 (235)
219 2i3b_A HCR-ntpase, human cance 94.7 0.015 5.2E-07 49.1 2.7 21 211-231 3-23 (189)
220 2pcj_A ABC transporter, lipopr 94.6 0.017 5.7E-07 50.2 2.9 23 209-231 30-52 (224)
221 1sq5_A Pantothenate kinase; P- 94.6 0.022 7.4E-07 51.9 3.7 25 207-231 78-102 (308)
222 2yhs_A FTSY, cell division pro 94.6 0.035 1.2E-06 53.8 5.3 37 195-231 272-315 (503)
223 3lnc_A Guanylate kinase, GMP k 94.6 0.012 4.1E-07 51.0 1.9 22 209-230 27-48 (231)
224 3dl0_A Adenylate kinase; phosp 94.6 0.018 6.1E-07 49.2 3.0 21 211-231 2-22 (216)
225 3b85_A Phosphate starvation-in 94.6 0.017 5.8E-07 49.6 2.8 22 210-231 23-44 (208)
226 3nwj_A ATSK2; P loop, shikimat 94.5 0.015 5E-07 51.5 2.4 23 209-231 48-70 (250)
227 1np6_A Molybdopterin-guanine d 94.5 0.021 7E-07 47.6 3.1 23 209-231 6-28 (174)
228 3ake_A Cytidylate kinase; CMP 94.5 0.02 6.7E-07 48.4 3.0 21 211-231 4-24 (208)
229 1b0u_A Histidine permease; ABC 94.4 0.019 6.7E-07 51.0 3.0 23 209-231 32-54 (262)
230 2cbz_A Multidrug resistance-as 94.4 0.02 6.8E-07 50.1 2.9 23 209-231 31-53 (237)
231 3gfo_A Cobalt import ATP-bindi 94.4 0.02 7E-07 51.3 3.0 23 209-231 34-56 (275)
232 1g41_A Heat shock protein HSLU 94.4 0.022 7.4E-07 54.6 3.3 46 186-231 15-72 (444)
233 1ji0_A ABC transporter; ATP bi 94.3 0.022 7.4E-07 50.0 2.9 23 209-231 32-54 (240)
234 2d2e_A SUFC protein; ABC-ATPas 94.3 0.023 8E-07 50.1 3.2 23 209-231 29-51 (250)
235 1g6h_A High-affinity branched- 94.3 0.022 7.4E-07 50.5 2.9 23 209-231 33-55 (257)
236 2wji_A Ferrous iron transport 94.3 0.036 1.2E-06 45.0 4.1 23 210-232 4-26 (165)
237 4g1u_C Hemin import ATP-bindin 94.3 0.022 7.7E-07 50.7 3.0 23 209-231 37-59 (266)
238 2dyk_A GTP-binding protein; GT 94.3 0.03 1E-06 44.7 3.6 23 210-232 2-24 (161)
239 1mv5_A LMRA, multidrug resista 94.3 0.025 8.4E-07 49.7 3.2 23 209-231 28-50 (243)
240 3ice_A Transcription terminati 94.2 0.03 1E-06 52.6 3.8 53 197-251 163-216 (422)
241 2olj_A Amino acid ABC transpor 94.2 0.023 7.9E-07 50.6 3.0 23 209-231 50-72 (263)
242 2pze_A Cystic fibrosis transme 94.2 0.024 8E-07 49.4 3.0 23 209-231 34-56 (229)
243 1yrb_A ATP(GTP)binding protein 94.2 0.029 9.9E-07 49.3 3.6 24 208-231 13-36 (262)
244 1oix_A RAS-related protein RAB 94.2 0.025 8.6E-07 47.3 3.0 24 209-232 29-52 (191)
245 1e4v_A Adenylate kinase; trans 94.2 0.024 8.1E-07 48.5 2.9 21 211-231 2-22 (214)
246 2zu0_C Probable ATP-dependent 94.2 0.025 8.7E-07 50.4 3.2 23 209-231 46-68 (267)
247 3be4_A Adenylate kinase; malar 94.2 0.024 8.2E-07 48.6 3.0 23 209-231 5-27 (217)
248 1ak2_A Adenylate kinase isoenz 94.2 0.028 9.6E-07 48.8 3.4 23 209-231 16-38 (233)
249 2xb4_A Adenylate kinase; ATP-b 94.2 0.025 8.5E-07 48.8 3.0 21 211-231 2-22 (223)
250 1fzq_A ADP-ribosylation factor 94.2 0.034 1.1E-06 46.0 3.7 26 207-232 14-39 (181)
251 3r20_A Cytidylate kinase; stru 94.2 0.026 8.8E-07 49.3 3.1 23 209-231 9-31 (233)
252 2zej_A Dardarin, leucine-rich 94.2 0.024 8.1E-07 47.0 2.8 22 211-232 4-25 (184)
253 2ff7_A Alpha-hemolysin translo 94.2 0.024 8.2E-07 50.0 2.9 23 209-231 35-57 (247)
254 1sgw_A Putative ABC transporte 94.1 0.021 7.2E-07 49.2 2.4 22 210-231 36-57 (214)
255 3d3q_A TRNA delta(2)-isopenten 94.1 0.027 9.2E-07 52.0 3.2 22 210-231 8-29 (340)
256 1vpl_A ABC transporter, ATP-bi 94.1 0.026 8.8E-07 50.1 3.0 23 209-231 41-63 (256)
257 4eaq_A DTMP kinase, thymidylat 94.1 0.044 1.5E-06 47.6 4.5 25 208-232 25-49 (229)
258 1q3t_A Cytidylate kinase; nucl 94.1 0.029 1E-06 48.7 3.3 25 207-231 14-38 (236)
259 2ixe_A Antigen peptide transpo 94.1 0.026 8.7E-07 50.5 2.9 23 209-231 45-67 (271)
260 2qe7_A ATP synthase subunit al 94.1 0.066 2.3E-06 51.8 6.0 102 197-303 151-265 (502)
261 1ltq_A Polynucleotide kinase; 94.1 0.029 9.8E-07 50.6 3.3 22 210-231 3-24 (301)
262 1q57_A DNA primase/helicase; d 94.0 0.29 1E-05 47.5 10.8 93 208-303 241-365 (503)
263 2ghi_A Transport protein; mult 94.0 0.026 9E-07 50.1 2.9 23 209-231 46-68 (260)
264 3llm_A ATP-dependent RNA helic 94.0 0.22 7.5E-06 43.0 8.9 105 194-303 65-187 (235)
265 2v3c_C SRP54, signal recogniti 94.0 0.034 1.2E-06 53.2 3.8 37 195-231 78-121 (432)
266 3sr0_A Adenylate kinase; phosp 94.0 0.028 9.6E-07 48.1 3.0 87 211-311 2-93 (206)
267 3l0o_A Transcription terminati 94.0 0.2 6.8E-06 47.0 8.8 36 195-231 162-197 (427)
268 2qi9_C Vitamin B12 import ATP- 94.0 0.028 9.6E-07 49.6 3.0 22 210-231 27-48 (249)
269 3a8t_A Adenylate isopentenyltr 94.0 0.037 1.3E-06 51.0 3.9 23 209-231 40-62 (339)
270 2yz2_A Putative ABC transporte 94.0 0.027 9.3E-07 50.2 2.9 23 209-231 33-55 (266)
271 2f9l_A RAB11B, member RAS onco 93.9 0.027 9.4E-07 47.2 2.8 24 209-232 5-28 (199)
272 3vr4_D V-type sodium ATPase su 93.9 0.022 7.6E-07 54.5 2.4 106 197-303 140-259 (465)
273 2ihy_A ABC transporter, ATP-bi 93.9 0.028 9.7E-07 50.5 3.0 23 209-231 47-69 (279)
274 4a1f_A DNAB helicase, replicat 93.9 0.2 7E-06 46.1 8.8 91 209-303 46-167 (338)
275 2nq2_C Hypothetical ABC transp 93.9 0.029 9.9E-07 49.6 3.0 23 209-231 31-53 (253)
276 2ce2_X GTPase HRAS; signaling 93.9 0.032 1.1E-06 44.5 3.0 22 211-232 5-26 (166)
277 2vp4_A Deoxynucleoside kinase; 93.8 0.03 1E-06 48.5 2.9 25 208-232 19-43 (230)
278 2qm8_A GTPase/ATPase; G protei 93.8 0.061 2.1E-06 49.6 5.1 35 197-231 43-77 (337)
279 2eyu_A Twitching motility prot 93.8 0.035 1.2E-06 49.3 3.4 24 208-231 24-47 (261)
280 2wjg_A FEOB, ferrous iron tran 93.8 0.04 1.4E-06 45.4 3.5 24 209-232 7-30 (188)
281 2nzj_A GTP-binding protein REM 93.7 0.036 1.2E-06 44.9 3.1 24 209-232 4-27 (175)
282 1fx0_A ATP synthase alpha chai 93.7 0.066 2.2E-06 51.9 5.3 88 210-303 164-266 (507)
283 1z2a_A RAS-related protein RAB 93.7 0.035 1.2E-06 44.6 3.0 24 209-232 5-28 (168)
284 1svm_A Large T antigen; AAA+ f 93.7 0.049 1.7E-06 51.1 4.3 36 196-231 156-191 (377)
285 3crm_A TRNA delta(2)-isopenten 93.7 0.036 1.2E-06 50.8 3.3 22 210-231 6-27 (323)
286 1a7j_A Phosphoribulokinase; tr 93.7 0.022 7.4E-07 51.5 1.8 24 208-231 4-27 (290)
287 2lkc_A Translation initiation 93.7 0.06 2.1E-06 43.8 4.4 25 208-232 7-31 (178)
288 2p67_A LAO/AO transport system 93.7 0.065 2.2E-06 49.5 5.0 36 196-231 43-78 (341)
289 3sop_A Neuronal-specific septi 93.6 0.034 1.2E-06 49.6 3.0 21 211-231 4-24 (270)
290 2r9v_A ATP synthase subunit al 93.6 0.05 1.7E-06 52.7 4.3 102 197-303 164-278 (515)
291 4f4c_A Multidrug resistance pr 93.6 0.5 1.7E-05 51.5 12.6 23 209-231 1105-1127(1321)
292 3end_A Light-independent proto 93.6 0.043 1.5E-06 49.7 3.6 25 207-231 39-63 (307)
293 1u8z_A RAS-related protein RAL 93.6 0.039 1.3E-06 44.2 3.0 24 210-233 5-28 (168)
294 3con_A GTPase NRAS; structural 93.6 0.038 1.3E-06 45.7 3.0 23 210-232 22-44 (190)
295 1z08_A RAS-related protein RAB 93.6 0.051 1.7E-06 43.8 3.7 24 209-232 6-29 (170)
296 3zvl_A Bifunctional polynucleo 93.6 0.038 1.3E-06 52.6 3.3 25 207-231 256-280 (416)
297 2v9p_A Replication protein E1; 93.5 0.038 1.3E-06 50.2 3.1 34 198-231 115-148 (305)
298 1tue_A Replication protein E1; 93.5 0.068 2.3E-06 45.7 4.4 36 195-231 45-80 (212)
299 1nij_A Hypothetical protein YJ 93.5 0.039 1.4E-06 50.4 3.2 25 208-232 3-27 (318)
300 2pjz_A Hypothetical protein ST 93.5 0.039 1.3E-06 49.1 3.0 22 210-231 31-52 (263)
301 1f6b_A SAR1; gtpases, N-termin 93.4 0.057 2E-06 45.3 3.9 35 197-232 14-48 (198)
302 1ls1_A Signal recognition part 93.4 0.047 1.6E-06 49.4 3.6 23 209-231 98-120 (295)
303 3bh0_A DNAB-like replicative h 93.4 0.19 6.6E-06 45.7 7.8 51 209-263 68-118 (315)
304 2afh_E Nitrogenase iron protei 93.4 0.048 1.6E-06 48.9 3.6 23 209-231 2-24 (289)
305 3nh6_A ATP-binding cassette SU 93.4 0.032 1.1E-06 50.8 2.4 23 209-231 80-102 (306)
306 1tq4_A IIGP1, interferon-induc 93.4 0.038 1.3E-06 52.5 3.0 35 197-231 57-91 (413)
307 2ged_A SR-beta, signal recogni 93.4 0.053 1.8E-06 44.9 3.6 25 208-232 47-71 (193)
308 3k1j_A LON protease, ATP-depen 93.4 0.045 1.6E-06 54.7 3.7 42 186-231 41-82 (604)
309 1cp2_A CP2, nitrogenase iron p 93.4 0.047 1.6E-06 48.2 3.4 22 210-231 2-23 (269)
310 1nlf_A Regulatory protein REPA 93.4 0.042 1.4E-06 49.0 3.1 23 209-231 30-52 (279)
311 1c1y_A RAS-related protein RAP 93.4 0.053 1.8E-06 43.4 3.5 22 211-232 5-26 (167)
312 2erx_A GTP-binding protein DI- 93.4 0.044 1.5E-06 44.1 3.0 23 210-232 4-26 (172)
313 1cr0_A DNA primase/helicase; R 93.3 0.042 1.4E-06 49.4 3.1 24 209-232 35-58 (296)
314 3exa_A TRNA delta(2)-isopenten 93.3 0.05 1.7E-06 49.6 3.5 23 209-231 3-25 (322)
315 1z0j_A RAB-22, RAS-related pro 93.3 0.046 1.6E-06 44.0 3.0 24 210-233 7-30 (170)
316 1ek0_A Protein (GTP-binding pr 93.3 0.046 1.6E-06 43.9 3.0 23 211-233 5-27 (170)
317 1kao_A RAP2A; GTP-binding prot 93.3 0.047 1.6E-06 43.6 3.0 22 211-232 5-26 (167)
318 3q72_A GTP-binding protein RAD 93.3 0.04 1.4E-06 44.3 2.6 22 211-232 4-25 (166)
319 1ky3_A GTP-binding protein YPT 93.3 0.048 1.6E-06 44.4 3.0 25 208-232 7-31 (182)
320 2gj8_A MNME, tRNA modification 93.2 0.045 1.5E-06 44.8 2.9 23 210-232 5-27 (172)
321 2ocp_A DGK, deoxyguanosine kin 93.2 0.053 1.8E-06 47.2 3.5 24 209-232 2-25 (241)
322 2bbs_A Cystic fibrosis transme 93.1 0.044 1.5E-06 49.5 2.9 23 209-231 64-86 (290)
323 3q85_A GTP-binding protein REM 93.1 0.061 2.1E-06 43.3 3.5 22 210-231 3-24 (169)
324 2c61_A A-type ATP synthase non 93.1 0.04 1.4E-06 53.0 2.7 104 197-301 141-258 (469)
325 1m7b_A RND3/RHOE small GTP-bin 93.1 0.049 1.7E-06 44.9 2.9 24 209-232 7-30 (184)
326 3gqb_B V-type ATP synthase bet 93.1 0.037 1.3E-06 53.0 2.4 105 197-302 136-261 (464)
327 3t1o_A Gliding protein MGLA; G 93.1 0.046 1.6E-06 45.2 2.8 23 209-231 14-36 (198)
328 3fvq_A Fe(3+) IONS import ATP- 93.1 0.048 1.6E-06 50.8 3.1 23 209-231 30-52 (359)
329 1wms_A RAB-9, RAB9, RAS-relate 93.1 0.053 1.8E-06 44.1 3.0 24 209-232 7-30 (177)
330 3ihw_A Centg3; RAS, centaurin, 93.1 0.053 1.8E-06 44.9 3.1 24 209-232 20-43 (184)
331 3tui_C Methionine import ATP-b 93.0 0.051 1.8E-06 50.7 3.2 23 209-231 54-76 (366)
332 1svi_A GTP-binding protein YSX 93.0 0.057 2E-06 44.7 3.3 25 208-232 22-46 (195)
333 1g16_A RAS-related protein SEC 93.0 0.053 1.8E-06 43.6 2.9 23 210-232 4-26 (170)
334 3pqc_A Probable GTP-binding pr 93.0 0.061 2.1E-06 44.4 3.4 26 208-233 22-47 (195)
335 1h65_A Chloroplast outer envel 93.0 0.11 3.8E-06 46.0 5.3 36 198-233 28-63 (270)
336 3cmu_A Protein RECA, recombina 93.0 0.13 4.4E-06 57.8 6.8 88 208-302 1426-1515(2050)
337 3tw8_B RAS-related protein RAB 93.0 0.057 1.9E-06 43.9 3.1 25 208-232 8-32 (181)
338 3def_A T7I23.11 protein; chlor 93.0 0.098 3.3E-06 46.2 4.9 37 197-233 24-60 (262)
339 1r2q_A RAS-related protein RAB 93.0 0.055 1.9E-06 43.4 3.0 23 210-232 7-29 (170)
340 1nrj_B SR-beta, signal recogni 93.0 0.064 2.2E-06 45.5 3.6 26 208-233 11-36 (218)
341 2hxs_A RAB-26, RAS-related pro 93.0 0.056 1.9E-06 43.9 3.1 24 209-232 6-29 (178)
342 1r8s_A ADP-ribosylation factor 93.0 0.051 1.8E-06 43.5 2.8 21 212-232 3-23 (164)
343 1z0f_A RAB14, member RAS oncog 93.0 0.055 1.9E-06 43.9 3.0 25 209-233 15-39 (179)
344 3hjn_A DTMP kinase, thymidylat 93.0 0.093 3.2E-06 44.4 4.5 88 211-301 2-90 (197)
345 3c5c_A RAS-like protein 12; GD 92.9 0.056 1.9E-06 44.8 3.1 24 209-232 21-44 (187)
346 3upu_A ATP-dependent DNA helic 92.9 0.093 3.2E-06 50.5 5.0 36 193-231 32-67 (459)
347 3kkq_A RAS-related protein M-R 92.9 0.067 2.3E-06 43.8 3.5 25 208-232 17-41 (183)
348 4edh_A DTMP kinase, thymidylat 92.9 0.12 4.3E-06 44.2 5.3 23 209-231 6-28 (213)
349 3foz_A TRNA delta(2)-isopenten 92.9 0.058 2E-06 49.1 3.3 24 208-231 9-32 (316)
350 2fn4_A P23, RAS-related protei 92.9 0.097 3.3E-06 42.5 4.5 25 208-232 8-32 (181)
351 4dsu_A GTPase KRAS, isoform 2B 92.9 0.068 2.3E-06 43.8 3.6 24 210-233 5-28 (189)
352 1upt_A ARL1, ADP-ribosylation 92.9 0.058 2E-06 43.5 3.0 24 209-232 7-30 (171)
353 2cxx_A Probable GTP-binding pr 92.9 0.054 1.8E-06 44.6 2.9 22 211-232 3-24 (190)
354 2iwr_A Centaurin gamma 1; ANK 92.9 0.048 1.6E-06 44.5 2.5 23 210-232 8-30 (178)
355 1p5z_B DCK, deoxycytidine kina 92.9 0.041 1.4E-06 48.6 2.3 24 208-231 23-46 (263)
356 1lw7_A Transcriptional regulat 92.9 0.057 1.9E-06 50.3 3.3 23 209-231 170-192 (365)
357 2bme_A RAB4A, RAS-related prot 92.8 0.057 2E-06 44.3 3.0 24 209-232 10-33 (186)
358 3t5g_A GTP-binding protein RHE 92.8 0.069 2.4E-06 43.6 3.5 24 209-232 6-29 (181)
359 1z47_A CYSA, putative ABC-tran 92.8 0.056 1.9E-06 50.3 3.2 23 209-231 41-63 (355)
360 1m2o_B GTP-binding protein SAR 92.8 0.057 2E-06 44.9 2.9 23 210-232 24-46 (190)
361 3kta_A Chromosome segregation 92.8 0.063 2.1E-06 44.3 3.2 22 210-231 27-48 (182)
362 1pui_A ENGB, probable GTP-bind 92.8 0.033 1.1E-06 46.9 1.4 24 209-232 26-49 (210)
363 2y8e_A RAB-protein 6, GH09086P 92.8 0.06 2E-06 43.7 2.9 23 210-232 15-37 (179)
364 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.061 2.1E-06 44.0 3.0 23 210-232 6-28 (186)
365 2a9k_A RAS-related protein RAL 92.7 0.062 2.1E-06 44.0 3.0 25 209-233 18-42 (187)
366 3rlf_A Maltose/maltodextrin im 92.7 0.061 2.1E-06 50.5 3.2 23 209-231 29-51 (381)
367 3bgw_A DNAB-like replicative h 92.7 0.46 1.6E-05 45.4 9.5 51 208-262 196-246 (444)
368 2oil_A CATX-8, RAS-related pro 92.7 0.063 2.1E-06 44.5 3.0 24 209-232 25-48 (193)
369 2yyz_A Sugar ABC transporter, 92.7 0.061 2.1E-06 50.1 3.2 23 209-231 29-51 (359)
370 2it1_A 362AA long hypothetical 92.6 0.063 2.1E-06 50.1 3.2 23 209-231 29-51 (362)
371 3bwd_D RAC-like GTP-binding pr 92.6 0.065 2.2E-06 43.7 3.0 23 210-232 9-31 (182)
372 1zj6_A ADP-ribosylation factor 92.6 0.15 5E-06 42.0 5.2 34 196-232 6-39 (187)
373 2dr3_A UPF0273 protein PH0284; 92.6 0.064 2.2E-06 46.4 3.1 113 209-328 23-170 (247)
374 2efe_B Small GTP-binding prote 92.6 0.067 2.3E-06 43.6 3.1 24 209-232 12-35 (181)
375 2www_A Methylmalonic aciduria 92.6 0.076 2.6E-06 49.2 3.7 24 208-231 73-96 (349)
376 3bc1_A RAS-related protein RAB 92.6 0.065 2.2E-06 44.1 3.0 24 209-232 11-34 (195)
377 2bov_A RAla, RAS-related prote 92.6 0.065 2.2E-06 44.8 3.0 25 208-232 13-37 (206)
378 3d31_A Sulfate/molybdate ABC t 92.6 0.056 1.9E-06 50.1 2.7 23 209-231 26-48 (348)
379 1u0j_A DNA replication protein 92.5 0.13 4.3E-06 45.8 4.9 36 196-231 91-126 (267)
380 1g29_1 MALK, maltose transport 92.5 0.065 2.2E-06 50.2 3.2 23 209-231 29-51 (372)
381 3cbq_A GTP-binding protein REM 92.5 0.055 1.9E-06 45.3 2.5 23 208-230 22-44 (195)
382 2g6b_A RAS-related protein RAB 92.5 0.069 2.4E-06 43.5 3.0 25 209-233 10-34 (180)
383 1v43_A Sugar-binding transport 92.5 0.067 2.3E-06 50.1 3.2 23 209-231 37-59 (372)
384 3llu_A RAS-related GTP-binding 92.5 0.066 2.2E-06 44.7 2.9 23 209-231 20-42 (196)
385 2atv_A RERG, RAS-like estrogen 92.5 0.07 2.4E-06 44.5 3.0 24 209-232 28-51 (196)
386 3tkl_A RAS-related protein RAB 92.5 0.088 3E-06 43.6 3.7 26 208-233 15-40 (196)
387 2fg5_A RAB-22B, RAS-related pr 92.5 0.069 2.4E-06 44.4 3.0 25 209-233 23-47 (192)
388 1vg8_A RAS-related protein RAB 92.5 0.085 2.9E-06 44.1 3.6 25 208-232 7-31 (207)
389 3cf2_A TER ATPase, transitiona 92.4 0.13 4.3E-06 53.0 5.4 94 186-303 477-581 (806)
390 1zbd_A Rabphilin-3A; G protein 92.4 0.074 2.5E-06 44.5 3.1 25 209-233 8-32 (203)
391 1ksh_A ARF-like protein 2; sma 92.4 0.071 2.4E-06 43.8 2.9 26 208-233 17-42 (186)
392 1ega_A Protein (GTP-binding pr 92.4 0.077 2.6E-06 48.0 3.4 25 208-232 7-31 (301)
393 3clv_A RAB5 protein, putative; 92.4 0.074 2.5E-06 44.0 3.0 24 209-232 7-30 (208)
394 3mfy_A V-type ATP synthase alp 92.3 0.15 5.3E-06 49.8 5.5 59 197-260 216-275 (588)
395 2ck3_A ATP synthase subunit al 92.3 0.088 3E-06 51.0 3.8 106 197-303 151-273 (510)
396 1oxx_K GLCV, glucose, ABC tran 92.3 0.051 1.8E-06 50.5 2.1 23 209-231 31-53 (353)
397 2h92_A Cytidylate kinase; ross 92.3 0.062 2.1E-06 45.8 2.5 22 210-231 4-25 (219)
398 2fh5_B SR-beta, signal recogni 92.3 0.074 2.5E-06 44.9 3.0 25 209-233 7-31 (214)
399 3oes_A GTPase rhebl1; small GT 92.3 0.074 2.5E-06 44.6 2.9 25 209-233 24-48 (201)
400 2qu8_A Putative nucleolar GTP- 92.2 0.1 3.4E-06 44.8 3.8 25 208-232 28-52 (228)
401 1gwn_A RHO-related GTP-binding 92.2 0.075 2.6E-06 45.0 2.9 24 209-232 28-51 (205)
402 1zd9_A ADP-ribosylation factor 92.2 0.077 2.6E-06 43.9 3.0 24 209-232 22-45 (188)
403 2q6t_A DNAB replication FORK h 92.2 0.57 1.9E-05 44.7 9.5 53 208-263 199-251 (444)
404 2gf9_A RAS-related protein RAB 92.2 0.078 2.7E-06 43.8 3.0 25 209-233 22-46 (189)
405 2x77_A ADP-ribosylation factor 92.2 0.11 3.8E-06 42.8 4.0 35 198-232 10-45 (189)
406 2q3h_A RAS homolog gene family 92.2 0.077 2.6E-06 44.3 3.0 24 209-232 20-43 (201)
407 3reg_A RHO-like small GTPase; 92.2 0.079 2.7E-06 44.0 3.0 25 209-233 23-47 (194)
408 2cjw_A GTP-binding protein GEM 92.2 0.076 2.6E-06 44.3 2.9 23 209-231 6-28 (192)
409 3iev_A GTP-binding protein ERA 92.2 0.087 3E-06 47.9 3.5 27 206-232 7-33 (308)
410 4bas_A ADP-ribosylation factor 92.2 0.091 3.1E-06 43.6 3.4 27 207-233 15-41 (199)
411 2qnr_A Septin-2, protein NEDD5 92.2 0.061 2.1E-06 48.8 2.4 22 209-231 19-40 (301)
412 1z06_A RAS-related protein RAB 92.1 0.083 2.8E-06 43.7 3.1 24 209-232 20-43 (189)
413 2a5j_A RAS-related protein RAB 92.1 0.081 2.8E-06 43.9 3.0 24 209-232 21-44 (191)
414 3cmu_A Protein RECA, recombina 92.1 0.24 8.3E-06 55.7 7.5 103 194-303 367-472 (2050)
415 2b6h_A ADP-ribosylation factor 92.1 0.073 2.5E-06 44.4 2.7 24 209-232 29-52 (192)
416 2ew1_A RAS-related protein RAB 92.1 0.08 2.7E-06 44.7 3.0 24 209-232 26-49 (201)
417 3cmw_A Protein RECA, recombina 92.1 0.22 7.7E-06 55.2 7.1 89 208-303 382-472 (1706)
418 2p5s_A RAS and EF-hand domain 92.1 0.082 2.8E-06 44.2 3.0 25 208-232 27-51 (199)
419 2o52_A RAS-related protein RAB 92.1 0.08 2.7E-06 44.4 2.9 24 209-232 25-48 (200)
420 1x3s_A RAS-related protein RAB 92.0 0.083 2.8E-06 43.6 3.0 23 210-232 16-38 (195)
421 3oaa_A ATP synthase subunit al 92.0 0.45 1.5E-05 46.0 8.3 100 197-303 151-265 (513)
422 3v9p_A DTMP kinase, thymidylat 92.0 0.11 3.9E-06 45.0 3.9 23 209-231 25-47 (227)
423 3eph_A TRNA isopentenyltransfe 92.0 0.084 2.9E-06 49.8 3.2 23 209-231 2-24 (409)
424 3dz8_A RAS-related protein RAB 92.0 0.078 2.7E-06 44.0 2.7 25 209-233 23-47 (191)
425 2gf0_A GTP-binding protein DI- 91.9 0.08 2.8E-06 43.9 2.8 24 209-232 8-31 (199)
426 3gmt_A Adenylate kinase; ssgci 91.9 0.081 2.8E-06 46.0 2.9 23 209-231 8-30 (230)
427 3k53_A Ferrous iron transport 91.9 0.1 3.5E-06 46.3 3.6 24 209-232 3-26 (271)
428 2ewv_A Twitching motility prot 91.9 0.087 3E-06 49.3 3.2 104 208-328 135-241 (372)
429 3ch4_B Pmkase, phosphomevalona 91.9 0.12 4.1E-06 44.0 3.8 24 208-231 10-33 (202)
430 3gd7_A Fusion complex of cysti 91.9 0.084 2.9E-06 49.7 3.1 23 209-231 47-69 (390)
431 2axn_A 6-phosphofructo-2-kinas 91.9 0.098 3.3E-06 51.3 3.7 24 208-231 34-57 (520)
432 2fv8_A H6, RHO-related GTP-bin 91.9 0.09 3.1E-06 44.3 3.0 23 210-232 26-48 (207)
433 2il1_A RAB12; G-protein, GDP, 91.9 0.077 2.6E-06 44.1 2.6 24 209-232 26-49 (192)
434 2bcg_Y Protein YP2, GTP-bindin 91.8 0.088 3E-06 44.2 2.9 24 209-232 8-31 (206)
435 3cr8_A Sulfate adenylyltranfer 91.8 0.075 2.6E-06 52.4 2.8 23 209-231 369-391 (552)
436 1moz_A ARL1, ADP-ribosylation 91.8 0.059 2E-06 44.1 1.8 24 208-231 17-40 (183)
437 2qmh_A HPR kinase/phosphorylas 91.8 0.1 3.5E-06 44.3 3.2 23 209-231 34-56 (205)
438 2gza_A Type IV secretion syste 91.8 0.072 2.5E-06 49.6 2.5 23 209-231 175-197 (361)
439 2j1l_A RHO-related GTP-binding 91.7 0.091 3.1E-06 44.6 3.0 24 209-232 34-57 (214)
440 2obl_A ESCN; ATPase, hydrolase 91.7 0.088 3E-06 48.8 3.0 35 197-232 60-94 (347)
441 4gzl_A RAS-related C3 botulinu 91.7 0.11 3.6E-06 43.8 3.3 25 209-233 30-54 (204)
442 3lxx_A GTPase IMAP family memb 91.7 0.12 4.1E-06 44.8 3.7 26 208-233 28-53 (239)
443 1p9r_A General secretion pathw 91.7 0.16 5.5E-06 48.3 4.9 34 196-231 156-189 (418)
444 2h17_A ADP-ribosylation factor 91.7 0.085 2.9E-06 43.3 2.6 24 209-232 21-44 (181)
445 4dzz_A Plasmid partitioning pr 91.6 0.098 3.4E-06 43.9 3.0 22 210-231 2-24 (206)
446 2hup_A RAS-related protein RAB 91.6 0.098 3.4E-06 43.9 3.0 24 209-232 29-52 (201)
447 3lv8_A DTMP kinase, thymidylat 91.6 0.17 5.6E-06 44.2 4.5 51 209-261 27-78 (236)
448 2gco_A H9, RHO-related GTP-bin 91.6 0.099 3.4E-06 43.8 3.0 23 210-232 26-48 (201)
449 2g3y_A GTP-binding protein GEM 91.5 0.1 3.4E-06 44.6 3.0 23 209-231 37-59 (211)
450 2h57_A ADP-ribosylation factor 91.5 0.079 2.7E-06 43.8 2.3 25 209-233 21-45 (190)
451 3cph_A RAS-related protein SEC 91.5 0.1 3.5E-06 43.9 3.0 24 209-232 20-43 (213)
452 2j0v_A RAC-like GTP-binding pr 91.5 0.1 3.4E-06 44.0 2.9 24 209-232 9-32 (212)
453 2atx_A Small GTP binding prote 91.5 0.1 3.4E-06 43.3 2.9 24 209-232 18-41 (194)
454 3fdi_A Uncharacterized protein 91.5 0.098 3.4E-06 44.4 2.8 23 209-231 6-28 (201)
455 2fu5_C RAS-related protein RAB 91.5 0.062 2.1E-06 44.0 1.5 24 209-232 8-31 (183)
456 1g8f_A Sulfate adenylyltransfe 91.4 0.099 3.4E-06 51.0 3.2 25 207-231 393-417 (511)
457 4tmk_A Protein (thymidylate ki 91.4 0.2 6.7E-06 43.0 4.7 51 210-262 4-55 (213)
458 2f7s_A C25KG, RAS-related prot 91.4 0.12 4E-06 43.8 3.2 24 209-232 25-48 (217)
459 2pt7_A CAG-ALFA; ATPase, prote 91.4 0.081 2.8E-06 48.6 2.3 100 210-328 172-272 (330)
460 4dkx_A RAS-related protein RAB 91.3 0.11 3.7E-06 44.6 3.0 22 211-232 15-36 (216)
461 2qag_B Septin-6, protein NEDD5 91.3 0.095 3.2E-06 49.9 2.8 20 212-231 45-64 (427)
462 4dhe_A Probable GTP-binding pr 91.3 0.09 3.1E-06 44.7 2.4 26 208-233 28-53 (223)
463 1bif_A 6-phosphofructo-2-kinas 91.2 0.12 4.1E-06 49.9 3.5 23 209-231 39-61 (469)
464 2rcn_A Probable GTPase ENGC; Y 91.2 0.11 3.9E-06 48.2 3.2 23 210-232 216-238 (358)
465 2yv5_A YJEQ protein; hydrolase 91.2 0.11 3.8E-06 47.1 3.1 31 195-230 156-186 (302)
466 3q3j_B RHO-related GTP-binding 91.2 0.11 3.9E-06 44.1 3.0 24 209-232 27-50 (214)
467 3kjh_A CO dehydrogenase/acetyl 91.2 0.096 3.3E-06 45.3 2.6 21 211-231 2-22 (254)
468 3vr4_A V-type sodium ATPase ca 91.2 0.27 9.2E-06 48.3 5.9 59 197-260 221-280 (600)
469 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.087 3E-06 50.8 2.4 23 209-231 138-160 (460)
470 1wf3_A GTP-binding protein; GT 91.1 0.14 4.7E-06 46.4 3.6 25 208-232 6-30 (301)
471 3geh_A MNME, tRNA modification 91.0 0.38 1.3E-05 46.3 6.8 85 96-232 163-247 (462)
472 1jwy_B Dynamin A GTPase domain 91.0 0.098 3.3E-06 47.3 2.5 27 207-233 22-48 (315)
473 2xtp_A GTPase IMAP family memb 90.9 0.15 5.2E-06 44.6 3.6 25 208-232 21-45 (260)
474 2r8r_A Sensor protein; KDPD, P 90.9 0.12 4.1E-06 44.8 2.8 104 211-328 8-124 (228)
475 4hlc_A DTMP kinase, thymidylat 90.9 0.18 6E-06 43.0 3.8 50 210-262 3-52 (205)
476 3cmw_A Protein RECA, recombina 90.8 0.31 1E-05 54.1 6.5 89 208-303 1430-1520(1706)
477 2qag_C Septin-7; cell cycle, c 90.8 0.11 3.9E-06 49.3 2.8 21 212-232 34-54 (418)
478 1ypw_A Transitional endoplasmi 90.7 0.062 2.1E-06 55.6 1.0 46 186-231 477-533 (806)
479 3ld9_A DTMP kinase, thymidylat 90.7 0.17 5.8E-06 43.7 3.6 53 208-262 20-74 (223)
480 1yqt_A RNAse L inhibitor; ATP- 90.7 0.13 4.4E-06 50.6 3.2 24 209-232 312-335 (538)
481 3ozx_A RNAse L inhibitor; ATP 90.7 0.12 4.1E-06 50.8 3.0 23 209-231 294-316 (538)
482 3b1v_A Ferrous iron uptake tra 90.7 0.21 7.3E-06 44.4 4.4 24 209-232 3-26 (272)
483 2orw_A Thymidine kinase; TMTK, 90.6 0.14 4.7E-06 42.8 2.9 22 210-231 4-25 (184)
484 1yqt_A RNAse L inhibitor; ATP- 90.6 0.13 4.6E-06 50.5 3.2 23 209-231 47-69 (538)
485 2aka_B Dynamin-1; fusion prote 90.6 0.27 9.2E-06 43.8 5.0 38 196-233 9-50 (299)
486 2dpy_A FLII, flagellum-specifi 90.5 0.13 4.6E-06 49.1 3.0 34 198-232 147-180 (438)
487 3ea0_A ATPase, para family; al 90.5 0.17 5.9E-06 43.6 3.5 24 208-231 3-27 (245)
488 3cpj_B GTP-binding protein YPT 90.5 0.15 5E-06 43.5 3.0 24 209-232 13-36 (223)
489 3euj_A Chromosome partition pr 90.4 0.14 4.9E-06 49.5 3.2 22 210-231 30-51 (483)
490 1mky_A Probable GTP-binding pr 90.4 0.23 7.8E-06 47.4 4.6 45 189-233 151-204 (439)
491 2xau_A PRE-mRNA-splicing facto 90.4 0.89 3E-05 46.7 9.3 107 193-303 97-219 (773)
492 3thx_A DNA mismatch repair pro 90.4 0.59 2E-05 48.9 8.0 21 209-229 662-682 (934)
493 1m8p_A Sulfate adenylyltransfe 90.4 0.16 5.6E-06 50.3 3.6 24 208-231 395-418 (573)
494 3ozx_A RNAse L inhibitor; ATP 90.3 0.15 5E-06 50.2 3.2 24 208-231 24-47 (538)
495 3lxw_A GTPase IMAP family memb 90.3 0.16 5.4E-06 44.4 3.1 25 209-233 21-45 (247)
496 3iby_A Ferrous iron transport 90.3 0.16 5.3E-06 44.9 3.1 23 210-232 2-24 (256)
497 3k9g_A PF-32 protein; ssgcid, 90.3 0.16 5.5E-06 44.7 3.2 43 207-252 25-68 (267)
498 1u0l_A Probable GTPase ENGC; p 90.2 0.15 5.2E-06 46.1 3.0 33 194-231 159-191 (301)
499 2qtf_A Protein HFLX, GTP-bindi 90.2 0.15 5.1E-06 47.5 3.0 26 208-233 178-203 (364)
500 3t5d_A Septin-7; GTP-binding p 90.1 0.14 4.7E-06 45.6 2.6 23 210-232 9-31 (274)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=5.1e-25 Score=220.25 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=125.5
Q ss_pred ccccccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHc--cCCcccccceEEEEEeCCCC--CHHHHHHHHHHh
Q 018692 189 SEFENSGEKLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYN--NNHVKFYFDCLAWVRVSMLH--DFGKILDDIIKS 263 (352)
Q Consensus 189 vGr~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~il~~i~~~ 263 (352)
|||+.++++|.++|..+ +.+.++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 78999999999999999985 899999999999
Q ss_pred cCCCCc--c-ccCCCCCHHHHHHHHHHHcCCc-eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc---hhhhhcCC
Q 018692 264 VMPPAR--V-RVIIGEDYQLKKSILQDYLTNK-KYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS---KVALHVET 336 (352)
Q Consensus 264 l~~~~~--~-~~~~~~~~~~l~~~l~~~L~~k-r~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT---~va~~~~~ 336 (352)
++.... . ......+...+...+++.|.+| ||||||||||+ .+.+ .+.. .+||+||||| .++..++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 987632 1 1123456778899999999996 99999999999 7654 2211 2799999999 78877753
Q ss_pred CCceeecCCChhh
Q 018692 337 PKYLELPLTCLVE 349 (352)
Q Consensus 337 ~~~~~~~l~~L~~ 349 (352)
.. ..++|++|++
T Consensus 284 ~~-~~~~l~~L~~ 295 (549)
T 2a5y_B 284 TC-EFIEVTSLEI 295 (549)
T ss_dssp CE-EEEECCCCCH
T ss_pred CC-eEEECCCCCH
Confidence 32 3578888864
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.84 E-value=5.3e-21 Score=207.07 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=118.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCc-cccc-ceEEEEEeCCCCC--HHHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHV-KFYF-DCLAWVRVSMLHD--FGKILDDII 261 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~il~~i~ 261 (352)
..++||+.++++|.++|...+.+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 67999999999999999876667899999999999999999999996433 5556 5677999998654 345577788
Q ss_pred HhcCCCCccccCCCCCHHHHHHHHHHHcCCc--eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc---hhhhhcCC
Q 018692 262 KSVMPPARVRVIIGEDYQLKKSILQDYLTNK--KYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS---KVALHVET 336 (352)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT---~va~~~~~ 336 (352)
..+............+.+.+...++..|.++ ||||||||||+ ...|..+ .+||+||||| .++..+..
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 8877654322234567889999999999887 99999999999 7665442 5799999999 67754332
Q ss_pred CCceeecCCC-hh
Q 018692 337 PKYLELPLTC-LV 348 (352)
Q Consensus 337 ~~~~~~~l~~-L~ 348 (352)
.. ..+++.+ |+
T Consensus 276 ~~-~~~~~~~~l~ 287 (1249)
T 3sfz_A 276 PK-HVVPVESGLG 287 (1249)
T ss_dssp CB-CCEECCSSCC
T ss_pred Cc-eEEEecCCCC
Confidence 22 2456654 54
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.83 E-value=3e-21 Score=199.76 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=109.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccce-EEEEEeCCCCCHHHHHHHHHHhc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-LAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~il~~i~~~l 264 (352)
...+||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345999999999999998643 3789999999999999999999998889999997 89999999999988888887753
Q ss_pred CCCC---cccc----CCCCCHHHHHHHHHHHc---CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc---hhh
Q 018692 265 MPPA---RVRV----IIGEDYQLKKSILQDYL---TNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS---KVA 331 (352)
Q Consensus 265 ~~~~---~~~~----~~~~~~~~l~~~l~~~L---~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT---~va 331 (352)
+... .... ....+.+.+...++..| .+|||||||||||+ .+.|+.+. +||+||||| .++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHH
Confidence 3211 0000 00113455667777766 68999999999999 88887652 699999999 566
Q ss_pred hhc
Q 018692 332 LHV 334 (352)
Q Consensus 332 ~~~ 334 (352)
..+
T Consensus 279 ~~l 281 (1221)
T 1vt4_I 279 DFL 281 (1221)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=175.45 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=105.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCc-cccc-ceEEEEEeCCCCCHHHHHHHH---
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHV-KFYF-DCLAWVRVSMLHDFGKILDDI--- 260 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~il~~i--- 260 (352)
..+|||+.+.++|.++|.....+.++++|+||||+||||||+.+|++..+ ..+| +.++|+++++. +...++..+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 67999999999999999865556899999999999999999999996555 7889 47999999876 333444443
Q ss_pred HHhcCCCCccccCCCCCHHHHHHHHHHHcCC--ceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc---hhhhhcC
Q 018692 261 IKSVMPPARVRVIIGEDYQLKKSILQDYLTN--KKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS---KVALHVE 335 (352)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT---~va~~~~ 335 (352)
+..++...........+.+.+...++..+.+ +++||||||||+ ...+. .+ .+||+||||| .++..+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~----~l---~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLK----AF---DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHH----TT---CSSCEEEEEESCGGGGTTCC
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHH----Hh---cCCCeEEEECCCcHHHHhcC
Confidence 4455432111112345677888888888876 789999999999 55443 23 4689999999 5555544
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.1e-16 Score=126.25 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=68.7
Q ss_pred hchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCcCChHHHHHHHHHHHH
Q 018692 30 TNLAPLFQNLLTEFEIITTTLLGNYEADMARHLIQLIRQEFDESKMSLPFLQLLDLE--ESDEEDVKRPEILEILEDIND 107 (352)
Q Consensus 30 a~l~~v~~~l~~~~~~~~s~ll~~~~~~~~~~~~~~l~~L~~~L~~i~~~l~~a~~~--~~~~~~~~~~~v~~Wl~~lr~ 107 (352)
|++++++++|.+ .+.. ++.++.++++++++|+++|++|++||.+++.+ +..+ +.++.|+++||+
T Consensus 1 a~v~~ll~KL~~-------ll~~--E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d-----~~vk~W~~~vrd 66 (115)
T 3qfl_A 1 AAISNLIPKLGE-------LLTE--EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLD-----SQDKLWADEVRE 66 (115)
T ss_dssp CTTCSHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC-----HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-------HHHH--HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----HHHHHHHHHHHH
Confidence 355666776632 2233 34589999999999999999999999999998 4567 999999999999
Q ss_pred HHHhHHHHHHHhHHhhhc
Q 018692 108 FVYESEEAIDTFFINIMQ 125 (352)
Q Consensus 108 ~ayd~eD~lD~~~~~~~~ 125 (352)
++||+||+||+|.++...
T Consensus 67 laYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 67 LSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999998764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.16 E-value=6.4e-11 Score=113.22 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=84.2
Q ss_pred CccccccccHHHHHHHH-hc--CC--CCceEEEE--EcCCCccHHHHHHHHHccCCcccc-----cc-eEEEEEeCCCCC
Q 018692 186 LDISEFENSGEKLFDLL-IE--GP--SGLSVVAI--LDSSGFDKTAFAADTYNNNHVKFY-----FD-CLAWVRVSMLHD 252 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--vG~gGvGKTtLA~~v~~~~~~~~~-----F~-~~~wv~vs~~~~ 252 (352)
..++||+.+.++|.++| .. .. .....+.| +|++|+|||||++.+++. .... |+ ..+|+......+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCC
Confidence 67999999999999998 42 11 23445556 999999999999999983 3321 23 257777767778
Q ss_pred HHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 018692 253 FGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFD 303 (352)
Q Consensus 253 ~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~ 303 (352)
...++..++.+++...+. ...+...+...+...+. +++++|||||++.
T Consensus 100 ~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 899999999998765331 23345666777777775 6899999999976
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=6.2e-10 Score=105.34 Aligned_cols=137 Identities=15% Similarity=0.021 Sum_probs=94.8
Q ss_pred CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHHccCCcccc--------cceEEEEEeCCCC-CHH
Q 018692 186 LDISEFENSGEKLFDLLIE--GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY--------FDCLAWVRVSMLH-DFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~ 254 (352)
..++||+.+++++.++|.. .....+.+.|+|++|+||||||+.+++ ..... ....+|+..+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865 233456889999999999999999998 33221 2346777776666 788
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCchh---HHH-HHhhCCCCCCCcEEEecc
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDESEI---WDD-LEEVLPENQNGSRVLILS 328 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~---~~~-l~~~l~~~~~gsrIivTT 328 (352)
.++..++..+.+.... ....+...+...+...+..++.+||||+++. ... .+. +...+... .+..||+||
T Consensus 98 ~~~~~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~-~~~~iI~~t 171 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVDT-LVKRRGGDIVLYQLLRSD-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTHH-HHHSTTSHHHHHHHHTSS-SCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHHH-hccCCCCceeHHHHhcCC-cceEEEEEE
Confidence 8888988887332211 1233446677788888887766999999976 221 222 22222222 577888888
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.97 E-value=2.1e-09 Score=101.48 Aligned_cols=113 Identities=18% Similarity=0.084 Sum_probs=86.7
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCcccc------cceEEEEEeCCCCCHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY------FDCLAWVRVSMLHDFGKIL 257 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~il 257 (352)
..++||+.+.+++.++|..- ......+.|+|++|+||||||+.+++ ..... --..+|+......+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 67999999999999999542 33466788999999999999999997 33221 1235778888888888999
Q ss_pred HHHHHhcCCCCccccCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 018692 258 DDIIKSVMPPARVRVIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFD 303 (352)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~ 303 (352)
..++.+++...+ ....+...+...+...+. +++.+|+||++..
T Consensus 97 ~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~ 141 (387)
T 2v1u_A 97 SAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF 141 (387)
T ss_dssp HHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred HHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh
Confidence 999999976543 234456676777777773 5689999999976
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.97 E-value=4.2e-09 Score=99.60 Aligned_cols=138 Identities=19% Similarity=0.190 Sum_probs=98.8
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHccCCccccc-ceEEEEEeCCCCCHHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCLAWVRVSMLHDFGKILDDI 260 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~il~~i 260 (352)
..++||+.+.++|.++|.. .....+.+.|+|++|+|||||++.+++. ..... ...+|+..+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999999975 2223348899999999999999999973 33321 245777777777888999999
Q ss_pred HHhcCCCCccccCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCC-chhHHHHHhhCCCCC----CCcEEEecc
Q 018692 261 IKSVMPPARVRVIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFDE-SEIWDDLEEVLPENQ----NGSRVLILS 328 (352)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~----~gsrIivTT 328 (352)
+..++...+ ....+...+...+...+. +++.+||||++... ......+...+.... .+..||+||
T Consensus 95 ~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 95 ARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 166 (389)
T ss_dssp HHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred HHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence 998876433 133455666677666664 56889999999763 455566666554311 366777776
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.90 E-value=2.2e-09 Score=99.87 Aligned_cols=130 Identities=11% Similarity=0.074 Sum_probs=87.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC------CHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH------DFGKILDD 259 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~il~~ 259 (352)
..++||+.+.+.|.+++..+ +++.|+|++|+|||||++.+++.. . .+|+.+.... +...+++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHH
Confidence 67999999999999998753 689999999999999999999842 1 6677664332 55667777
Q ss_pred HHHhcCCC--------------CccccCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCCch---------hHHHHHhhC
Q 018692 260 IIKSVMPP--------------ARVRVIIGEDYQLKKSILQDYLTN-KKYFIVLDDVFDESE---------IWDDLEEVL 315 (352)
Q Consensus 260 i~~~l~~~--------------~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~~~~---------~~~~l~~~l 315 (352)
+...+... .........+...+...+...... ++++|||||++. .. .+..+...+
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~-~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQY-LRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGG-GGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHH-HhccCccchhhHHHHHHHHH
Confidence 76655430 000001124556677777766653 389999999976 32 233333332
Q ss_pred CCCCCCcEEEecc
Q 018692 316 PENQNGSRVLILS 328 (352)
Q Consensus 316 ~~~~~gsrIivTT 328 (352)
.. .++.++|+|+
T Consensus 160 ~~-~~~~~~il~g 171 (350)
T 2qen_A 160 DS-LPNLKIILTG 171 (350)
T ss_dssp HH-CTTEEEEEEE
T ss_pred Hh-cCCeEEEEEC
Confidence 22 2477888887
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.86 E-value=2e-09 Score=101.44 Aligned_cols=138 Identities=16% Similarity=0.147 Sum_probs=93.2
Q ss_pred CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCccccc---ceEEEEEeCCCCCHHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCLAWVRVSMLHDFGKILDDI 260 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~il~~i 260 (352)
..++||+.+++.|.+++..- ......+.|+|++|+|||||++.+++ .....+ ...+|+..+...+...++..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 67999999999999999752 23456888999999999999999998 443333 245777766666777888888
Q ss_pred HHhcCCCCccccCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCC-----chhHHHHHhhCCC-CCCCcEEEecc
Q 018692 261 IKSVMPPARVRVIIGEDYQLKKSILQDYLT--NKKYFIVLDDVFDE-----SEIWDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~-----~~~~~~l~~~l~~-~~~gsrIivTT 328 (352)
+.+++...+ ....+...+...+...+. +++.+||||+++.. ...+..+...+.. ...+..+|+||
T Consensus 98 ~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 98 LESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp TTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 887765433 123345666666666664 45899999998651 2233344333321 12345567776
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.85 E-value=9.3e-09 Score=89.98 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=74.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|++..++.|.+++.... ....+.|+|++|+||||||+.+++. ....+... ......... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGIT----ATPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSC----SSCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC----CCCCcccHH-HHHHhccCC
Confidence 779999999999999997643 2347889999999999999999873 22111000 000000000 001110000
Q ss_pred CCCccccC-CCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 266 PPARVRVI-IGEDYQLKKSILQDYL-----TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 266 ~~~~~~~~-~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
........ .......+. .+...+ .+++.+||+||++.. ...++.+...+.....+..+|+||
T Consensus 95 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred cceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 00000000 001112222 222222 346899999999653 667777777776555678888888
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.85 E-value=1.7e-08 Score=87.17 Aligned_cols=120 Identities=11% Similarity=0.022 Sum_probs=75.1
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc-cc-eEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY-FD-CLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
.+++|++..++.+.+++.... ...+.|+|.+|+|||+||+.+++ ..... +. ..+.+..+...+...+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHH
Confidence 779999999999999998753 33388999999999999999987 32221 22 23334433333332222221111
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..... .-.+++.+||+||++.. ...++.+...+.....++++|+||
T Consensus 93 ~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 93 ARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp HTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred hcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 11000 00257889999999763 445566666655445577888888
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.73 E-value=2e-08 Score=93.52 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=79.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCC-----CCHHHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSML-----HDFGKILDDI 260 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~il~~i 260 (352)
..++||+.+.+.|.+ +.. +++.|+|++|+|||||++.+++. ... ..+|+..... .+...++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 679999999999999 653 58999999999999999999884 222 2578876642 3444554444
Q ss_pred HHhcC--------------CC----Ccc--ccC-----CCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----chhHHH
Q 018692 261 IKSVM--------------PP----ARV--RVI-----IGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-----SEIWDD 310 (352)
Q Consensus 261 ~~~l~--------------~~----~~~--~~~-----~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-----~~~~~~ 310 (352)
...+. .- .+. ... .......+...+.+.-. ++++|||||++.. ...+..
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 44321 00 000 000 12345566666665433 4999999999551 122333
Q ss_pred HHhhCCCCCCCcEEEecc
Q 018692 311 LEEVLPENQNGSRVLILS 328 (352)
Q Consensus 311 l~~~l~~~~~gsrIivTT 328 (352)
+..... ..++.++|+|+
T Consensus 161 l~~~~~-~~~~~~~i~~g 177 (357)
T 2fna_A 161 LAYAYD-NLKRIKFIMSG 177 (357)
T ss_dssp HHHHHH-HCTTEEEEEEE
T ss_pred HHHHHH-cCCCeEEEEEc
Confidence 332222 22467888887
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=4e-08 Score=90.41 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=73.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc-ccc-eEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFD-CLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
.+++|++..++.|.+++..+. ...+.++|++|+||||+|+.+++ .... .+. ..+++..+....... +++++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence 789999999999999998754 23378999999999999999987 3321 121 233443333222221 1112211
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHc-CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYL-TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
+.... ..+ .+++.++|+||++.. ...++.+...+.....++++|+||
T Consensus 96 ~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 96 FAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp HHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEE
T ss_pred HHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEe
Confidence 11000 001 346889999999763 445555555554444577888887
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1e-06 Score=81.31 Aligned_cols=113 Identities=9% Similarity=0.067 Sum_probs=77.6
Q ss_pred ccccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHccCCcc---c---ccceEEEEEeCCCCCHHHHHH
Q 018692 187 DISEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNHVK---F---YFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~---~---~F~~~~wv~vs~~~~~~~il~ 258 (352)
.+.||+++.++|...|... ......+-|+|++|+|||++++.|++.-... . .| ..++|....-.+...++.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 4889999999999888753 3456778899999999999999999842111 1 12 245666666678889999
Q ss_pred HHHHhcCCCCccccCCCCCHHHHHHHHHHH--cCCceEEEEEeCCCC
Q 018692 259 DIIKSVMPPARVRVIIGEDYQLKKSILQDY--LTNKKYFIVLDDVFD 303 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVLDdvw~ 303 (352)
.|++++.+.... .......+...+... -.++.++++||.+..
T Consensus 100 ~I~~~L~g~~~~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 100 KIWFAISKENLC---GDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHHhcCCCCC---chHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 999999765321 233344444444432 245789999999976
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.36 E-value=3.1e-07 Score=77.21 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=38.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|++++++++.+++.... ...+.|+|.+|+|||+||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 679999999999999997743 45678999999999999999987
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=3.2e-07 Score=84.40 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=73.4
Q ss_pred CCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc-cc-eEEEEEeCCCCCHHHHHHHHH
Q 018692 184 PRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY-FD-CLAWVRVSMLHDFGKILDDII 261 (352)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~il~~i~ 261 (352)
.+.+++|++..++.+.+++..+. ...+.++|++|+||||+|+.+++. .... +. ..+.+..+...... .+++.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~~- 96 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIREK- 96 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHHH-
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHHH-
Confidence 34789999999999999998753 334889999999999999999873 2211 11 12333322211110 00111
Q ss_pred HhcCCCCccccCCCCCHHHHHHHHHHH--c-CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 262 KSVMPPARVRVIIGEDYQLKKSILQDY--L-TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
....... + .+++.++|+|+++.. ...++.+...+.....++++|+||
T Consensus 97 --------------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 97 --------------------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp --------------------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred --------------------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 1111110 1 256889999999763 456666766665445578888888
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.16 E-value=2.4e-06 Score=78.17 Aligned_cols=117 Identities=11% Similarity=0.055 Sum_probs=71.5
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCc-ccccc-eEEEEEeCCCCCHHHHHHHHHHh
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFD-CLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
.+++|++..++.+.+++..+. ...+-++|++|+|||++|+.+++. . ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~---------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI---------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCT----------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccCh----------
Confidence 779999999999998887643 333789999999999999999873 2 11111 1222333321110
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHH--c-CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDY--L-TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.........+... + .+++.++|+|++... ....+.+...+.....++++|+||
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~ 139 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC 139 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEE
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 0001111111111 1 256889999999653 455666777776555677888887
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.12 E-value=1.1e-05 Score=75.64 Aligned_cols=135 Identities=14% Similarity=0.023 Sum_probs=72.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.+++|++..++.+.+.+..+. ....+.|+|.+|+||||+|+.+.+.-.....+. ..++..-.....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 679999999999999997643 234677999999999999999986322111110 000000000111111000
Q ss_pred CCC----ccccCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 266 PPA----RVRVIIGEDYQLKKSILQDY-LTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 266 ~~~----~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
... ........+...+...+... ..+++.++|+||+... ...++.+...+.....+..+|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 000 00000112223322222111 1346789999999653 556677776665444567777777
No 21
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.04 E-value=5.2e-06 Score=71.05 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=55.0
Q ss_pred Ccccccc----ccHHHHHHHHhcCCCC--ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHH
Q 018692 186 LDISEFE----NSGEKLFDLLIEGPSG--LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDD 259 (352)
Q Consensus 186 ~~~vGr~----~~~~~l~~~L~~~~~~--~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~ 259 (352)
+++++.. ...+.+.+++...... ...+.|+|.+|+|||+||+.+++ .........+|++. ..+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~ 96 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRE 96 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHH
Confidence 5566543 3445555666543221 26788999999999999999998 33333334556643 345555
Q ss_pred HHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 260 IIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
+....... +.......+.. .-+|||||++.
T Consensus 97 ~~~~~~~~---------~~~~~~~~~~~-----~~~lilDei~~ 126 (202)
T 2w58_A 97 LKHSLQDQ---------TMNEKLDYIKK-----VPVLMLDDLGA 126 (202)
T ss_dssp HHHC---C---------CCHHHHHHHHH-----SSEEEEEEECC
T ss_pred HHHHhccc---------hHHHHHHHhcC-----CCEEEEcCCCC
Confidence 54432211 11333333332 23999999965
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=4.8e-06 Score=75.27 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=38.6
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..+++|.+.+... -....-+-|+|.+|+|||+||+.+++.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 78999999999998887531 123456789999999999999999983
No 23
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.01 E-value=4.9e-06 Score=69.97 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
-..+.|+|.+|+|||||++.+++.......+. ..++ +..+++..+......... ......+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~---------~~~~~~~~-- 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD---------TKFLKTVL-- 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC---------SHHHHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH---------HHHHHHhc--
Confidence 46789999999999999999987321011111 2233 345555555544332211 12222222
Q ss_pred cCCceEEEEEeCCCCC-chhHH--HHHhhCCC-CCCCcEEEecc
Q 018692 289 LTNKKYFIVLDDVFDE-SEIWD--DLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~-~~~~~--~l~~~l~~-~~~gsrIivTT 328 (352)
+.-+|||||++.. .+.|. .+...+.. ...|..||+||
T Consensus 100 ---~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ts 140 (180)
T 3ec2_A 100 ---NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITT 140 (180)
T ss_dssp ---TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ---CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4568999999842 33332 23332321 12467888888
No 24
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.01 E-value=9.1e-06 Score=65.97 Aligned_cols=110 Identities=10% Similarity=-0.067 Sum_probs=64.5
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCC-cccccceEEEEEeCCCCCHHHHHHHHHHhcC
Q 018692 187 DISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNH-VKFYFDCLAWVRVSMLHDFGKILDDIIKSVM 265 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~ 265 (352)
.++|....++++.+.+..-.....-|-|+|.+|+|||++|+.+++... ....| + +..+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc------------
Confidence 578999999999988864212223456999999999999999998421 12233 2 444332211
Q ss_pred CCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 266 PPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
...... +... ..-.|+||++... ......+...+.......+||.||
T Consensus 66 ----------~~~~~~---~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t 113 (145)
T 3n70_A 66 ----------PQLNDF---IALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIG 113 (145)
T ss_dssp ----------SCHHHH---HHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEE
T ss_pred ----------hhhhcH---HHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEEC
Confidence 011111 1111 2347899999764 444455555554334456788888
No 25
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.98 E-value=8.1e-06 Score=74.59 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=67.8
Q ss_pred ccccccccHHHHHHHHhcC-------------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCH
Q 018692 187 DISEFENSGEKLFDLLIEG-------------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDF 253 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (352)
+++|.+..++.|.+++... ......+-|+|.+|+|||+||+.+++.-.........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 5899999888888766421 234556889999999999999987762111111111122333311
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC---------C-chhHHHHHhhCCCCCCCcE
Q 018692 254 GKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD---------E-SEIWDDLEEVLPENQNGSR 323 (352)
Q Consensus 254 ~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~---------~-~~~~~~l~~~l~~~~~gsr 323 (352)
.+.... .......+...+... +..+|+||++.. . ......+...+.....+..
T Consensus 109 ---------~l~~~~-----~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQY-----IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCSS-----TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhhc-----ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 111110 111122233333332 345999999972 0 4455666666654445667
Q ss_pred EEecc
Q 018692 324 VLILS 328 (352)
Q Consensus 324 IivTT 328 (352)
||.||
T Consensus 172 ~i~~~ 176 (309)
T 3syl_A 172 VILAG 176 (309)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 77777
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.95 E-value=1.5e-05 Score=73.31 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=37.7
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|++..++.+..++..- ......+.|+|++|+|||+||+.+++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 78999999999988888631 12345677999999999999999987
No 27
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=3.3e-05 Score=71.88 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=36.1
Q ss_pred CCccccccccHHHHHHHH-hcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLL-IEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|.+...+.+.+++ ..+. ... +.|+|+.|+||||+++.+..
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 377999998888888888 4432 233 88999999999999998876
No 28
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.85 E-value=1.1e-05 Score=65.40 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=33.1
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 187 DISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+++|....++++.+.+..-.....-+-|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789998888888887642111233569999999999999999883
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.82 E-value=4.2e-05 Score=70.44 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=71.1
Q ss_pred CCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 184 PRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
.+.+++|.+..++.+.+++.... ...++-+.|.+|+|||++|+.+.+. ... ..+.+..+. .... .+++++..
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~~~-~i~~~~~~ 95 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CKID-FVRGPLTN 95 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CCHH-HHHTHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cCHH-HHHHHHHH
Confidence 34789999999999999998643 2456778888999999999999883 321 233444333 2222 12221111
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC--chhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE--SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.....+ ..+++.+|++|++... .+..+.+...+.....+.++|+||
T Consensus 96 ~~~~~~-------------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 96 FASAAS-------------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp HHHBCC-------------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred HHhhcc-------------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 100000 1237789999999772 123444544443323467888888
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=1.5e-05 Score=74.14 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=72.5
Q ss_pred CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccc-eEEEEEeCCCCCHHHHHHHHHHh
Q 018692 185 RLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD-CLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
+.+++|.+..++.+..++.... ...+.++|.+|+||||+|+.+.+.-.....+. ....+..+.......+ .+.+..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 112 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKN 112 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHH
Confidence 3789999999999999997653 22378999999999999999987311111121 1233333332233222 221111
Q ss_pred cCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 264 VMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
+...... ..... .....-.++.-+|++|++... ....+.+...+.......++|++|
T Consensus 113 ~~~~~~~---~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 113 FARLTVS---KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp HHHSCCC---CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred Hhhhccc---ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1110000 00000 001111235569999998653 445555665554444467777777
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.75 E-value=6.1e-05 Score=66.82 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=35.2
Q ss_pred CccccccccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLI---EGP-------SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|.+++. ... ...+-+-++|.+|+|||++|+.+++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 678998888877766543 221 2345577999999999999999988
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.75 E-value=7.8e-05 Score=68.95 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=39.3
Q ss_pred CCccccccccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|++..++.+..++... ......+-|+|++|+|||+||+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 378999999999999988742 23355678999999999999999987
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.69 E-value=0.00013 Score=65.34 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=34.4
Q ss_pred CccccccccHHHHHH-------HHhcC-CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFD-------LLIEG-PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|.....+++++ .+... ......+-|+|.+|+|||+||+.+++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457777777666665 33321 334677889999999999999999983
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.66 E-value=0.00013 Score=67.31 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=37.7
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE----------GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|.+.+.. .....+-+-++|.+|+|||+||+.+++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 7899999999999888731 112345678999999999999999998
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.64 E-value=0.00047 Score=64.32 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=36.9
Q ss_pred CccccccccHHH---HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEK---LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..++. +.+.+.........+-|+|++|+|||+||+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 789999988776 45555554333467889999999999999999983
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.63 E-value=0.0003 Score=64.93 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.4
Q ss_pred CccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEG----------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..++.|.+.+... ....+-+-++|++|+|||+||+.+++.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 78999999998888776421 123467789999999999999999983
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.61 E-value=5.4e-05 Score=73.09 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=66.7
Q ss_pred Cccc-ccccc--HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccce--EEEEEeCCCCCHHHHHHHH
Q 018692 186 LDIS-EFENS--GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC--LAWVRVSMLHDFGKILDDI 260 (352)
Q Consensus 186 ~~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~il~~i 260 (352)
.+++ |..+. ...+......... ...+.|+|.+|+||||||+.+++ .....|.. .++++ ...+..++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~------~~~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHH
Confidence 5566 64433 3334444433322 66788999999999999999998 44433322 34443 33344444
Q ss_pred HHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-c--hhHHHHHhhCCC-CCCCcEEEecc
Q 018692 261 IKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-S--EIWDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~--~~~~~l~~~l~~-~~~gsrIivTT 328 (352)
...+... ... .+...+..+.-+|+|||+... . ..-+.+...+.. ...|..||+||
T Consensus 176 ~~~~~~~---------~~~----~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt 234 (440)
T 2z4s_A 176 VDSMKEG---------KLN----EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS 234 (440)
T ss_dssp HHHHHTT---------CHH----HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHcc---------cHH----HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4443321 111 233333436679999999652 1 233344443321 13467888888
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00012 Score=68.01 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=36.4
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|..++..+. +..+.++|++|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 678898888888888887653 33378999999999999999987
No 39
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.59 E-value=0.00039 Score=65.77 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=38.1
Q ss_pred CCccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLLIEG----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|.+..++.|.+++... .....-+-|+|.+|+|||+||+.+++
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999888321 11245678999999999999999987
No 40
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=0.00016 Score=66.26 Aligned_cols=115 Identities=7% Similarity=-0.025 Sum_probs=68.9
Q ss_pred cccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccC-Ccc-cccceEEEEEeCC-CCCHHHHHHHHHHhcCC
Q 018692 190 EFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN-HVK-FYFDCLAWVRVSM-LHDFGKILDDIIKSVMP 266 (352)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~il~~i~~~l~~ 266 (352)
|-++..+.|.+.+..+. ....-++|++|+||||+|+.+.+.. ... .+.+ ..++..+. ...+.. .++++..+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhh
Confidence 34555667777776654 6788899999999999999997621 111 2223 24444332 233322 2334443332
Q ss_pred CCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 267 PARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
... .+++-++|+|++... ....+.+...+....+.+.+|++|
T Consensus 77 ~p~--------------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 77 SPE--------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp CCS--------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred ccc--------------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 211 245678999999764 566777777776555678877777
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.56 E-value=8.3e-05 Score=68.47 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=62.3
Q ss_pred Cccc-cccc--cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHH
Q 018692 186 LDIS-EFEN--SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 186 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
++++ |... ....+..++..+......+.|+|++|+||||||+.+++. ....-...++++ ...+...+..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~------~~~~~~~~~~ 82 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSS------ADDFAQAMVE 82 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEE------HHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE------HHHHHHHHHH
Confidence 5565 5332 234444544443324567789999999999999999873 321111234443 3334444443
Q ss_pred hcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-c--hhHHHHHhhCCC-CCCCcEEEecc
Q 018692 263 SVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFDE-S--EIWDDLEEVLPE-NQNGSRVLILS 328 (352)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~--~~~~~l~~~l~~-~~~gsrIivTT 328 (352)
.+... ...... ..+. +.-+|+|||+... . ...+.+...+.. ...|..||+||
T Consensus 83 ~~~~~---------~~~~~~----~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 83 HLKKG---------TINEFR----NMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILAS 138 (324)
T ss_dssp HHHHT---------CHHHHH----HHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHcC---------cHHHHH----HHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33211 112222 2222 3569999999652 1 223334433321 12356788887
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.55 E-value=0.0004 Score=67.03 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.8
Q ss_pred CccccccccHHHHHHHHhc----C------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIE----G------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..++.|.+.+.. . ....+-+-++|++|+|||+||+.+++.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999887731 0 123467789999999999999999983
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.54 E-value=0.0001 Score=69.13 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=37.8
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE----------GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|.+.+.. .....+.+-|+|.+|+|||+||+.+++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999888752 012355778999999999999999988
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.53 E-value=5.6e-05 Score=62.98 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=38.3
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|++.+.+.+.+.+.... ...+.|+|.+|+|||+||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 679999999999999997643 45567999999999999999987
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.52 E-value=8.2e-05 Score=71.90 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=37.0
Q ss_pred CccccccccH---HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSG---EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..+ ..|...+..+. ...+-++|.+|+||||||+.+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 7899988777 67777777654 56788999999999999999998
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00022 Score=70.20 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=40.1
Q ss_pred CCccccccccHHHHHHHHhcC---------------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 185 RLDISEFENSGEKLFDLLIEG---------------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+.+++|++..+++|.+||..- ....+.+-|+|++|+||||+|+.+++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999751 013468889999999999999999984
No 47
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.44 E-value=8.1e-05 Score=66.46 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=33.7
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++|....+.++.+.+..-......+-|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 56899999999888877542112245669999999999999999983
No 48
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.40 E-value=0.00078 Score=62.36 Aligned_cols=132 Identities=12% Similarity=-0.006 Sum_probs=71.1
Q ss_pred cccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcc--------------------cccceEEEEEeCCCC
Q 018692 192 ENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVK--------------------FYFDCLAWVRVSMLH 251 (352)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs~~~ 251 (352)
++..+.+.+.+..+. -...+-++|..|+|||++|+.+.+.-... .|++. .++....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~-- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEK-- 83 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCT--
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccc--
Confidence 344566666665542 24467899999999999999987631111 01221 2222110
Q ss_pred CHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCC-chhHHHHHhhCCCCCCCcEEE
Q 018692 252 DFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYL-----TNKKYFIVLDDVFDE-SEIWDDLEEVLPENQNGSRVL 325 (352)
Q Consensus 252 ~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIi 325 (352)
. ......+++.+ +.+.+ .+++-++|+|++... ....+.+...+....+++.+|
T Consensus 84 -----------------~---~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 84 -----------------G---KNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp -----------------T---CSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred -----------------c---CCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 0 01112222222 22222 246779999999764 556677777776555577777
Q ss_pred ecc----hhhhhcCCCCceeecCCChhh
Q 018692 326 ILS----KVALHVETPKYLELPLTCLVE 349 (352)
Q Consensus 326 vTT----~va~~~~~~~~~~~~l~~L~~ 349 (352)
++| .+.....+.. ..+.+.++++
T Consensus 143 l~t~~~~~l~~ti~SRc-~~~~~~~~~~ 169 (334)
T 1a5t_A 143 LATREPERLLATLRSRC-RLHYLAPPPE 169 (334)
T ss_dssp EEESCGGGSCHHHHTTS-EEEECCCCCH
T ss_pred EEeCChHhCcHHHhhcc-eeeeCCCCCH
Confidence 777 2333332322 2466666543
No 49
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.37 E-value=0.00038 Score=65.14 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=36.8
Q ss_pred CccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|.+.+... ....+-+-++|++|+|||+||+.+++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 78999999999998887321 11234567899999999999999998
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.37 E-value=7.4e-05 Score=68.10 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=37.1
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 45789888888888887642 12246889999999999999999987
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.00037 Score=61.81 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=34.4
Q ss_pred CCccccccccHHHHHHHH---hcCC-------CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 185 RLDISEFENSGEKLFDLL---IEGP-------SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+++|.+..++++.+.+ .... ...+-+.|+|.+|+||||||+.+++
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 378999888777766543 2210 1133477999999999999999987
No 52
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.36 E-value=0.0004 Score=62.87 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=37.7
Q ss_pred CccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.+..++.|.+++... ......+.|+|++|+||||||+.+++
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 78999999999998887431 11245778999999999999999998
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.36 E-value=0.00049 Score=62.71 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=58.7
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.+++|.+..+++|.+++... -.....+.++|++|+|||+||+.+++. ....| +.+ +..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~~-----i~v----~~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISI----KGP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCEE-----EEE----CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCCE-----EEE----EhH
Confidence 78999999888888877531 123556789999999999999999983 33322 222 233
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
.+..... +.. . ..+...+.........+|+||++..
T Consensus 84 ~l~~~~~---g~~-~---------~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 84 ELLTMWF---GES-E---------ANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHHH---TTC-T---------THHHHHHHHHHHTCSEEEEECSTTH
T ss_pred HHHhhhc---Cch-H---------HHHHHHHHHHHhcCCeEEEEEChHH
Confidence 3333221 111 1 1223333333345678999999963
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.35 E-value=0.00033 Score=68.36 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=58.0
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.+++|.+..+++|.+++... .....-+-|+|.+|+|||+||+.+++ ....+| +.+. ..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn------~~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLIN------GP 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEE------HH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEE------ch
Confidence 67999999999998887532 12345577999999999999999988 333333 2222 11
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDV 301 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdv 301 (352)
.+ ...+ .......+...+.....++..+|+||++
T Consensus 273 ~l----~~~~---------~g~~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 273 EI----MSKL---------AGESESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp HH----HTSC---------TTHHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred Hh----hhhh---------cchhHHHHHHHHHHHHhcCCcEEEecch
Confidence 11 1111 1112233344444555567789999998
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.34 E-value=0.00025 Score=68.97 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=37.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++|++.+++.+++.|.... ..-+-++|.+|+|||++|+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 679999999999999997643 33456899999999999999987
No 56
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.33 E-value=0.0015 Score=56.02 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-------cc-CCCCCHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV-------RV-IIGEDYQL 280 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~-------~~-~~~~~~~~ 280 (352)
-.++.|+|.+|+|||||+..+.. ..-...+|++....++...+.. +....+..... .. ....+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999986 1223578888777666655543 44333221000 00 11222244
Q ss_pred HHHHHHHHcCCceEEEEEeCCCC
Q 018692 281 KKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 281 l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
....++..+..+.-+||+|.+-.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 55666666655577999999865
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.27 E-value=0.00098 Score=60.91 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=36.5
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 187 DISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++|....+.++.+.+..-......+-|+|.+|+|||++|+.+++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 5789999999998888652222344669999999999999999874
No 58
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00044 Score=63.46 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=46.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEe--CCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRV--SMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 286 (352)
-+++-|+|++|+||||||.++... .-....|++. ++..+. ...+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------~~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------YNTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------------CBCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------------hhcCHHHHHHHHH
Confidence 356779999999999999999873 1123456666 333110 1134566666667
Q ss_pred HHcCCceEEEEEeCCCC
Q 018692 287 DYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~ 303 (352)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7776556 999999965
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.15 E-value=0.0025 Score=65.60 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=38.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|++.+++++++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 679999999999999998653 34457999999999999999886
No 60
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.00023 Score=57.98 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+.+..|..- .-..+.|+|..|+|||||++.+++.
T Consensus 26 ~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 26 ELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp HHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344555432 3468899999999999999999873
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.04 E-value=0.00088 Score=65.05 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=55.4
Q ss_pred CccccccccHHHHHHHHh---cC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHH
Q 018692 186 LDISEFENSGEKLFDLLI---EG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGK 255 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (352)
.+++|.++.++++.+.+. .. ..-.+-+.++|++|+|||+||+.+++ .....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH--
Confidence 789998888777666543 21 01123367999999999999999998 333233 22332221110
Q ss_pred HHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 256 ILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 256 il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
+ .......+...+.........+|+||++..
T Consensus 89 --------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 --------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp --------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred --------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 0 011122333444445556789999999843
No 62
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.99 E-value=0.00019 Score=65.82 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=27.7
Q ss_pred cHHHHHHHHhcCCC-CceEEEEEcCCCccHHHHHHHHHc
Q 018692 194 SGEKLFDLLIEGPS-GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 194 ~~~~l~~~L~~~~~-~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+.+.+++..... ....+-++|.+|+|||+||+.+++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 34455566654322 246778999999999999999998
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.99 E-value=0.00077 Score=70.40 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=37.9
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.++|++.+++++++.|.... ..-+.++|.+|+||||||+.+.+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 679999999999999997743 33457899999999999999987
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.94 E-value=0.00091 Score=68.90 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=38.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|++.+++++++.|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 679999999999999998743 33466999999999999999987
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.90 E-value=0.0011 Score=68.27 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=37.6
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+.+.+... ......+-++|.+|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999998888888642 12344788999999999999999987
No 66
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.80 E-value=0.0032 Score=58.72 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQ 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 286 (352)
.-.++.|+|.+|+|||||+.++... ....=..++|++....++.. .+..++....... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3579999999999999999998863 22111246788887777754 4455554432211 12345566666666
Q ss_pred HHcC-CceEEEEEeCCCC
Q 018692 287 DYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 287 ~~L~-~kr~LlVLDdvw~ 303 (352)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 6554 4555899999854
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.78 E-value=0.0024 Score=63.13 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=35.5
Q ss_pred CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|.++.++.+.+.+.- ......++.++|.+|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5578888887777665532 122456899999999999999999987
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.78 E-value=0.0022 Score=61.95 Aligned_cols=47 Identities=21% Similarity=0.104 Sum_probs=35.8
Q ss_pred CccccccccHHHHHH---HHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFD---LLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~---~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.++.++.+.. ++..+....+-+-++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 789999988876544 44444333456779999999999999999983
No 69
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.78 E-value=0.017 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+++|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998875
No 70
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.77 E-value=0.0015 Score=56.59 Aligned_cols=59 Identities=5% Similarity=-0.053 Sum_probs=37.2
Q ss_pred Ccccccc---ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeC
Q 018692 186 LDISEFE---NSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVS 248 (352)
Q Consensus 186 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs 248 (352)
.+++|.+ ...+.+..++... ....+.|+|.+|+||||||+.+++ ..........|+..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 6677633 3344555554443 356788999999999999999987 333222345566543
No 71
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.76 E-value=0.0025 Score=57.79 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356778899999999999999998
No 72
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.72 E-value=0.0013 Score=68.11 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=40.7
Q ss_pred CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIE-----------GPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.+++|.+..+++|.+++.. .-.....+.|+|.+|+||||||+.+.+ .....|
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~ 266 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF 266 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE
Confidence 7899999999999888853 112345688999999999999999988 444333
No 73
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.71 E-value=0.0034 Score=54.05 Aligned_cols=115 Identities=13% Similarity=0.019 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc----------------
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV---------------- 272 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~---------------- 272 (352)
-.++.|+|.+|+|||||++.+... ....=..+.|+.... ....+...+. .++.......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 358899999999999999998852 111112355555433 3444444333 3332211000
Q ss_pred ---CCCCCHHHHHHHHHHHcCC---ceEEEEEeCCCC----CchhHHHHHhhCCC--CCCCcEEEecc
Q 018692 273 ---IIGEDYQLKKSILQDYLTN---KKYFIVLDDVFD----ESEIWDDLEEVLPE--NQNGSRVLILS 328 (352)
Q Consensus 273 ---~~~~~~~~l~~~l~~~L~~---kr~LlVLDdvw~----~~~~~~~l~~~l~~--~~~gsrIivTT 328 (352)
....+..++...+...+.. +..+||||..-. +......+...+.. ...|.-||++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~ 165 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATS 165 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 0112455655555555432 334999999862 13223333333221 12477788888
No 74
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.70 E-value=0.0042 Score=57.84 Aligned_cols=89 Identities=16% Similarity=0.046 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQ 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 286 (352)
.-.++.|+|.+|+||||||.++... ....=...+|++....++.. .++.++....... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3568899999999999999998753 21111357889888877653 2445554322110 12234566666666
Q ss_pred HHcCC-ceEEEEEeCCCC
Q 018692 287 DYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 287 ~~L~~-kr~LlVLDdvw~ 303 (352)
..... +.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 55543 456999999854
No 75
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.68 E-value=0.01 Score=55.05 Aligned_cols=95 Identities=6% Similarity=0.006 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCc----cc---c-CCC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWVRVSMLHDFGKILDDIIKSVMPPAR----VR---V-IIG 275 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~----~~---~-~~~ 275 (352)
.-.++.|+|.+|+||||||.+++.+..... .=...+|++....++...+.+ ++..++.... .. . ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457889999999999999999887432211 124678999888888776544 4455543321 00 0 112
Q ss_pred CCHHHHHHHHHHHcC---CceEEEEEeCCCC
Q 018692 276 EDYQLKKSILQDYLT---NKKYFIVLDDVFD 303 (352)
Q Consensus 276 ~~~~~l~~~l~~~L~---~kr~LlVLDdvw~ 303 (352)
.....+...+...+. .+--+||+|.+-.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 222344445555553 4566999999854
No 76
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.67 E-value=0.0046 Score=53.22 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcc---c-ccceEEEEEeCCCCCHHHHHHHHHHhc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVK---F-YFDCLAWVRVSMLHDFGKILDDIIKSV 264 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~il~~i~~~l 264 (352)
-.+++|+|..|+|||||++.+....... . .-...+|+.-...+.... +..+.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~ 83 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 83 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence 4699999999999999999997622211 1 123467776655544433 23334433
No 77
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.66 E-value=0.006 Score=52.99 Aligned_cols=94 Identities=5% Similarity=-0.047 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCc----cc-cCCCCCHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWVRVSMLHDFGKILDDIIKSVMPPAR----VR-VIIGEDYQ 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~----~~-~~~~~~~~ 279 (352)
-.++.|+|.+|+|||||+..+........ .-...+|+.....++...+. .++..++.... .. .....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999999887322211 12467888877766655443 34445543320 00 00122223
Q ss_pred H---HHHHHHHHcC-CceEEEEEeCCCC
Q 018692 280 L---KKSILQDYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 280 ~---l~~~l~~~L~-~kr~LlVLDdvw~ 303 (352)
+ ....+...+. .+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2334555553 4677999999865
No 78
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.64 E-value=0.0016 Score=55.85 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.+.+......-.+++|+|..|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555543334567999999999999999999876
No 79
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.61 E-value=0.0058 Score=57.25 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQD 287 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 287 (352)
-.++-|.|.+|+||||||.++.... ...=..++|++....++.. .+..++....... ....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4578889999999999998887632 1112368899988877753 2444544322100 122356677777776
Q ss_pred HcCC-ceEEEEEeCCCC
Q 018692 288 YLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 288 ~L~~-kr~LlVLDdvw~ 303 (352)
.++. +--+||+|.+-.
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 6654 445999999853
No 80
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0014 Score=62.80 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=36.9
Q ss_pred CccccccccHHHHHHHHh----cC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLI----EG-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|.++.+++|.+.+. .. -...+=+-++|++|+|||.||+.+++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 889999999998887643 22 12355677999999999999999998
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0021 Score=61.53 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=57.6
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.++.|.++.+++|.+.+... -...+=+-++|++|+|||+||+.+++ ....+| +.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc--
Confidence 78899999999888766421 12345577999999999999999998 444333 2333322111
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVF 302 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw 302 (352)
. ..+.....+...+...-....++|.+|++.
T Consensus 245 ------------~-----~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 245 ------------K-----YLGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp ------------S-----SCSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred ------------c-----ccchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 0 011222333333333334578999999984
No 82
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.59 E-value=0.0052 Score=56.31 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCccc---------cc-----ceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc---
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKF---------YF-----DCLAWVRVSMLHDFGKILDDIIKSVMPPARV--- 270 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~--- 270 (352)
.-.++-|+|.+|+||||||.+++.+..... .. ..++|++....++..++.+ ++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 356889999999999999999876432211 11 4688999988888776654 44555443210
Q ss_pred -c-cCCCCCHH---HHHHHHHHHcCC--ceEEEEEeCCCC
Q 018692 271 -R-VIIGEDYQ---LKKSILQDYLTN--KKYFIVLDDVFD 303 (352)
Q Consensus 271 -~-~~~~~~~~---~l~~~l~~~L~~--kr~LlVLDdvw~ 303 (352)
. .....+.+ .+...+...+.. +--+||+|.+-.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0 01112323 345556666653 556999999853
No 83
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0022 Score=61.40 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=36.5
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|.++.+++|.+.+.-. -...+=+-++|++|+|||+||+.+++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 78889998888887766431 12345677999999999999999998
No 84
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0017 Score=61.38 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=57.3
Q ss_pred CccccccccHHHHHHHHhc----C-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLLIE----G-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.++.|.++.+++|.+.+.- + -...+=+-++|++|+|||.||+.+++ ....+| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 7888999888888766542 1 12345566999999999999999998 444444 2333222111
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
. ..+.+...+...+...-....++|.+|++..
T Consensus 221 ------------k-----~vGese~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 221 ------------K-----YIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp ------------S-----STTHHHHHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred ------------c-----ccchHHHHHHHHHHHHHHhCCceEeeecchh
Confidence 0 0112223333333333345789999999864
No 85
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.54 E-value=0.0051 Score=56.58 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccc----cceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc----cc-CCCCCHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCLAWVRVSMLHDFGKILDDIIKSVMPPARV----RV-IIGEDYQ 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~----~~-~~~~~~~ 279 (352)
-.++.|+|.+|+||||||.++..+...... =..++|++....++..++.+ ++..++..... .. ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468899999999999999998764322211 23679999888888776653 45555443210 00 0112223
Q ss_pred ---HHHHHHHHHcC--CceEEEEEeCCCC
Q 018692 280 ---LKKSILQDYLT--NKKYFIVLDDVFD 303 (352)
Q Consensus 280 ---~l~~~l~~~L~--~kr~LlVLDdvw~ 303 (352)
.+...+...+. .+--+||+|.+-.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 34555666654 4567999999854
No 86
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0022 Score=61.63 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=57.7
Q ss_pred CccccccccHHHHHHHHhc----C-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLLIE----G-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.++.|.++.+++|.+.+.- . -...+=|-++|++|+|||+||+.+++ ....+| +.+..+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L---- 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSEL---- 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHh----
Confidence 6788999988888776432 1 12355667999999999999999998 444443 22322211
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
.... .+.....+...+...-....++|++|++..
T Consensus 280 ----------~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 280 ----------VQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp ----------CCCS-----SSHHHHHHHHHHHHHHHTCSEEEEEECCTT
T ss_pred ----------hccc-----CCHHHHHHHHHHHHHHhcCCceEeeccccc
Confidence 1110 112223333333333345789999999864
No 87
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.49 E-value=0.0048 Score=57.59 Aligned_cols=88 Identities=13% Similarity=-0.004 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQD 287 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 287 (352)
-.++.|.|.+|+||||||.++.... ...=..++|++....++.. .+..++....... ....+.+++.+.++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4688999999999999999887632 1112357899988887743 2344544322110 112345555555554
Q ss_pred HcC-CceEEEEEeCCCC
Q 018692 288 YLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 288 ~L~-~kr~LlVLDdvw~ 303 (352)
..+ .+--+||+|.+-.
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 443 3445999999743
No 88
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.47 E-value=0.0076 Score=62.05 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=60.8
Q ss_pred CccccccccHHHHHHHHh----cC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLLI----EG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.++.|.++.+++|.+.+. .. -...+-|-++|++|+|||+||+.+++ ....+| +.|.. .
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~------~ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------P 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEH------H
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEh------H
Confidence 788899999988887753 22 12355677999999999999999998 554444 23321 1
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
++ ... ........+...+........++|+||++..
T Consensus 273 ~l----~sk---------~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 EI----MSK---------LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp HH----HSS---------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred Hh----hcc---------cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 11 111 0122334445555555566789999999854
No 89
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.47 E-value=0.0025 Score=54.30 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 191 FENSGEKLFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 191 r~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+++..+.|.+.+... .....+++|+|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567777777653 23568999999999999999999876
No 90
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.42 E-value=0.0032 Score=65.73 Aligned_cols=131 Identities=9% Similarity=0.159 Sum_probs=69.6
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILD 258 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~ 258 (352)
..++|.+..++.+...+... ......+.|+|..|+|||++|+.+.+. ....-...+.+..+.-... ..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HA-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-GG--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-hH--
Confidence 35789998888888877531 123467889999999999999999872 2111112233433332211 00
Q ss_pred HHHHhcCCCCccccCCCCCH-HHHHHHHHHHcCCceEEEEEeCCCCC-chhHHHHHhhCCCCC-----------CCcEEE
Q 018692 259 DIIKSVMPPARVRVIIGEDY-QLKKSILQDYLTNKKYFIVLDDVFDE-SEIWDDLEEVLPENQ-----------NGSRVL 325 (352)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~l~~~l~~~~-----------~gsrIi 325 (352)
...+-+..+. ..+.+. ..+...++. ...-+|+||++... .+..+.|...+..+. .+..||
T Consensus 633 --~s~l~g~~~~--~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI 705 (854)
T 1qvr_A 633 --VSRLIGAPPG--YVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVII 705 (854)
T ss_dssp --GGGC----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEE
T ss_pred --HHHHcCCCCC--CcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEE
Confidence 0111110000 000111 122233332 23458999999764 566677777665331 245588
Q ss_pred ecc
Q 018692 326 ILS 328 (352)
Q Consensus 326 vTT 328 (352)
+||
T Consensus 706 ~ts 708 (854)
T 1qvr_A 706 LTS 708 (854)
T ss_dssp EEC
T ss_pred Eec
Confidence 888
No 91
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.39 E-value=0.016 Score=53.04 Aligned_cols=87 Identities=7% Similarity=0.021 Sum_probs=56.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccc--cceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHH-HHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFY--FDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLK-KSIL 285 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l-~~~l 285 (352)
+++-|.|.+|+|||||+.++... .... =..++||+..+.++.. .+++++....... ....+.++. .+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 37899999999999999887763 2222 2357899988888754 3667776543211 122344555 4433
Q ss_pred HHH--c-CCceEEEEEeCCCC
Q 018692 286 QDY--L-TNKKYFIVLDDVFD 303 (352)
Q Consensus 286 ~~~--L-~~kr~LlVLDdvw~ 303 (352)
... + .++.-|+|+|-|-.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 333 3 34677999999865
No 92
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.36 E-value=0.0017 Score=53.15 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=52.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc------CCCCCHHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV------IIGEDYQLKKS 283 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~------~~~~~~~~l~~ 283 (352)
.+|.|+|++|+||||+|+.+ .. .. |. ++ +..+++++....-+....... ...........
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~--~g--~~---~i------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE--RG--AK---VI------VMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR 67 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH--TT--CE---EE------EHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH--CC--Cc---EE------EHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH
Confidence 47899999999999999999 42 11 11 22 234455554443321100000 00001112233
Q ss_pred HHHHHc-CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 284 ILQDYL-TNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 284 ~l~~~L-~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.+...+ ......+|+|++.. ...++.+...+. .+-..|.+.+
T Consensus 68 ~~~~~l~~~~~~~vi~dg~~~-~~~~~~l~~~~~--~~~~~i~l~~ 110 (179)
T 3lw7_A 68 LCVEELGTSNHDLVVFDGVRS-LAEVEEFKRLLG--DSVYIVAVHS 110 (179)
T ss_dssp HHHHHHCSCCCSCEEEECCCC-HHHHHHHHHHHC--SCEEEEEEEC
T ss_pred HHHHHHHhcCCCeEEEeCCCC-HHHHHHHHHHhC--CCcEEEEEEC
Confidence 444455 23344688899966 776676666553 2234455555
No 93
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.0041 Score=56.39 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 206 PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 206 ~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998876
No 94
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.24 E-value=0.0022 Score=59.34 Aligned_cols=46 Identities=24% Similarity=0.128 Sum_probs=35.4
Q ss_pred CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+-..+... ......+.++|++|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 67888877777766665432 22356789999999999999999998
No 95
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.24 E-value=0.0019 Score=58.43 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=36.7
Q ss_pred CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+...+... ......+-++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998887641 11234567999999999999999987
No 96
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.22 E-value=0.0023 Score=52.53 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|+.|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 97
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.17 E-value=0.014 Score=53.14 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHhcC------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEG------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.+.|... .....++.|+|.+|+||||++..+..
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 84 KEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 44555555432 13467999999999999999998876
No 98
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.16 E-value=0.0033 Score=52.62 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 99
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0043 Score=59.05 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=39.0
Q ss_pred CccccccccHHHHHHHHhc----C-------CCCceEEEEEcCCCccHHHHHHHHHccCCccccc
Q 018692 186 LDISEFENSGEKLFDLLIE----G-------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 239 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F 239 (352)
.++.|.++.+++|.+.+.- . -...+=|-++|++|+|||.||+.+++ ....+|
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 7888999988888776532 1 12345677999999999999999998 444443
No 100
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.13 E-value=0.0025 Score=52.72 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999987
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.13 E-value=0.016 Score=53.78 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCccccc----ceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc----c---c-CCC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYF----DCLAWVRVSMLHDFGKILDDIIKSVMPPARV----R---V-IIG 275 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~----~---~-~~~ 275 (352)
.-.++.|+|..|+|||||+..++......... ..++|+.....+....+ ..++...+..... . . ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999988742212111 24588887766654443 3344444332110 0 0 011
Q ss_pred CCHHHHHHHHHHHcC------CceEEEEEeCCCC
Q 018692 276 EDYQLKKSILQDYLT------NKKYFIVLDDVFD 303 (352)
Q Consensus 276 ~~~~~l~~~l~~~L~------~kr~LlVLDdvw~ 303 (352)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 122344555555554 4677999999866
No 102
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.12 E-value=0.003 Score=53.63 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 103
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.04 E-value=0.0035 Score=51.77 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 104
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.01 E-value=0.0049 Score=63.39 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=36.4
Q ss_pred CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+...+... ......+-++|.+|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45789888888888777531 12345788999999999999999987
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.00 E-value=0.0027 Score=55.28 Aligned_cols=110 Identities=15% Similarity=-0.014 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRVIIGEDYQLKKSILQDY 288 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 288 (352)
-.++.|.|..|+||||++..+.+ +...+-..+..+.-... .. ....|++.++..... .......++...+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~--~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPS--VEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCC--EEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccc--cccCCHHHHHHHHHHH
Confidence 46888999999999999987766 23222222333322221 11 112334444432221 1122335566666666
Q ss_pred cCCceE-EEEEeCCCCC-chhHHHHHhhCCCCCCCcEEEecc
Q 018692 289 LTNKKY-FIVLDDVFDE-SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~-LlVLDdvw~~-~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
+.+.++ +||+|.+..- .+..+.+.. +.+ .|-.||+|-
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~G 123 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISG 123 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEEC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEe
Confidence 655555 9999998542 344444433 222 256666655
No 106
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.00 E-value=0.0027 Score=56.37 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=35.5
Q ss_pred CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIE----------GPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..++.+.+.+.. .....+-+.++|.+|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 7899999988888876641 0011223669999999999999999983
No 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0036 Score=52.29 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 108
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.97 E-value=0.0029 Score=52.08 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 109
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.94 E-value=0.0054 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-.++.|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 110
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.94 E-value=0.0044 Score=57.82 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=35.5
Q ss_pred ccccccccHHHHHHHHh-------------cCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 187 DISEFENSGEKLFDLLI-------------EGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 47899888888888873 1112345678999999999999999998
No 111
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.92 E-value=0.0042 Score=55.75 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=33.6
Q ss_pred CccccccccHHHHHHHHhc---C---------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIE---G---------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++.|.++.+++|.+.+.. . ....+ +.++|++|+||||||+.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 7788988888888775431 1 11233 889999999999999999983
No 112
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.92 E-value=0.069 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998875
No 113
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.91 E-value=0.0044 Score=51.73 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|+.|+||||+++.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 114
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.90 E-value=0.0048 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-.+|.|+|+.|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 115
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.84 E-value=0.021 Score=55.26 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCC-------C
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPP-------A 268 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~-------~ 268 (352)
+.++.|..=. +=.-++|.|.+|+|||+|++.+.++. .+.+-+.++++-+.+.. .+.++.+++...-... .
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 4566665422 23467899999999999999988742 23345678888888776 4567788777642222 0
Q ss_pred cc--ccCCCCC------HHHHHHHHHHHcC---CceEEEEEeCCCC
Q 018692 269 RV--RVIIGED------YQLKKSILQDYLT---NKKYFIVLDDVFD 303 (352)
Q Consensus 269 ~~--~~~~~~~------~~~l~~~l~~~L~---~kr~LlVLDdvw~ 303 (352)
.. ....++. .....-.+.++++ ++..||++||+-.
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00 0011111 1122334455554 5899999999843
No 116
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.79 E-value=0.0046 Score=51.48 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999976
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.78 E-value=0.0057 Score=51.14 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 118
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.76 E-value=0.0052 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 119
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.75 E-value=0.0049 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 120
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.74 E-value=0.0039 Score=52.88 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 121
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.74 E-value=0.005 Score=52.18 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 122
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.74 E-value=0.031 Score=53.41 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.+.|... .....+|.++|.+|+||||++..+..
T Consensus 76 ~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 76 YDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp HHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555555432 12478999999999999999988764
No 123
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.73 E-value=0.0081 Score=55.81 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=31.6
Q ss_pred ccccccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 189 SEFENSGEKLFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 189 vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++.+.-.+++++.|... ......|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44455566777776532 33466789999999999999998776
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.72 E-value=0.0053 Score=50.81 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999996543
No 125
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.72 E-value=0.0056 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 126
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.72 E-value=0.013 Score=57.09 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCccccccccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 185 RLDISEFENSGEKLFDLLI---EGP-------SGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+.+++|.++.++++.+... ... .-.+-+.|+|.+|+||||||+.+++.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3789998887776665543 210 01123789999999999999999983
No 127
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.72 E-value=0.0064 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+..+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 128
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.70 E-value=0.0063 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.70 E-value=0.0054 Score=51.14 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999977
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.68 E-value=0.04 Score=52.13 Aligned_cols=94 Identities=7% Similarity=-0.020 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCccc----ccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc----c-cCCCCCHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV----R-VIIGEDYQ 279 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~----~-~~~~~~~~ 279 (352)
-.++.|+|.+|+|||||+..++-...... .-...+|++....++...+ ..+++.++..... . .....+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46899999999999999997753212211 2245788887777766554 3356665543210 0 01112222
Q ss_pred ---HHHHHHHHHcC-CceEEEEEeCCCC
Q 018692 280 ---LKKSILQDYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 280 ---~l~~~l~~~L~-~kr~LlVLDdvw~ 303 (352)
.....+...+. .+--+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 23333333332 4567999999744
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.67 E-value=0.0063 Score=50.93 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 132
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.65 E-value=0.0067 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+|+|+|..|+||||+++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 133
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.62 E-value=0.0063 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998763
No 134
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.61 E-value=0.0068 Score=51.29 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 135
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.61 E-value=0.0063 Score=53.59 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=32.9
Q ss_pred CccccccccHHHHHHHHh---cC--------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLI---EG--------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~--------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..+.++.+... .. ....+ +.|+|.+|+|||||++.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 778898776666554432 11 11223 889999999999999999984
No 136
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.60 E-value=0.0062 Score=49.91 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|.|+.|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999999976
No 137
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.59 E-value=0.012 Score=53.06 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=27.6
Q ss_pred cHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 194 SGEKLFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 194 ~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++++..+... .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444433 23467889999999999999999976
No 138
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.58 E-value=0.0058 Score=52.01 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999986
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.57 E-value=0.038 Score=52.89 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988764
No 140
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.56 E-value=0.007 Score=53.58 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999876
No 141
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.56 E-value=0.0073 Score=53.28 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 142
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.56 E-value=0.0065 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 143
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.55 E-value=0.0086 Score=52.88 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=29.2
Q ss_pred cccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 192 ENSGEKLFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 192 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+...+.+++.+..+ .....+|.++|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33445555555543 23467899999999999999999976
No 144
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0075 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 145
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.55 E-value=0.008 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+|.|.|+.|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 146
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.54 E-value=0.0075 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.54 E-value=0.0075 Score=51.56 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 148
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.53 E-value=0.067 Score=51.17 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=28.0
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.++|... ....++|.++|.+|+||||++..+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45666666532 13478999999999999999988774
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.53 E-value=0.0059 Score=50.70 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.53 E-value=0.0055 Score=50.64 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999976
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.52 E-value=0.0056 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 152
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.51 E-value=0.0076 Score=50.50 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 153
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.48 E-value=0.0077 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999984
No 154
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.48 E-value=0.0081 Score=53.32 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 155
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.47 E-value=0.0077 Score=55.23 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=35.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+...+..+ .-+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 46899999999988888764 2467899999999999999987
No 156
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.47 E-value=0.016 Score=55.87 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=62.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHHHHhcCCC------Cc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDIIKSVMPP------AR 269 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i~~~l~~~------~~ 269 (352)
+.++.|..=. .=.-++|.|.+|+|||+|++.+.++. .+.+-+.++++-+.+.. .+.++++++...-... ..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 5667665421 23567899999999999999987742 23344567788888765 4467777777653222 10
Q ss_pred c--ccCCCCCHH------HHHHHHHHHc---CCceEEEEEeCCCC
Q 018692 270 V--RVIIGEDYQ------LKKSILQDYL---TNKKYFIVLDDVFD 303 (352)
Q Consensus 270 ~--~~~~~~~~~------~l~~~l~~~L---~~kr~LlVLDdvw~ 303 (352)
. ....++... ...-.+.+++ +++..||++||+-.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 001122111 1112233333 47999999999843
No 157
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.47 E-value=0.066 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988874
No 158
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.46 E-value=0.0082 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....|.|+|+.|+||||+++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 159
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.46 E-value=0.0084 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.+||+|.|-|||||||.+..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 579999999999999999887654
No 160
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.45 E-value=0.011 Score=50.64 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+.+.+.+.. .....|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444444433 34788999999999999999998764
No 161
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.43 E-value=0.0085 Score=49.82 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-..|.+.|+.|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.41 E-value=0.0066 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 163
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.40 E-value=0.0099 Score=49.60 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.38 E-value=0.0082 Score=53.69 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=33.5
Q ss_pred CccccccccHHHHHHHHhc--C---------CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIE--G---------PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~--~---------~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..++++.+.... . ..... +.|+|.+|+|||||++.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 7889988777666554431 1 11223 889999999999999999984
No 165
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.37 E-value=0.015 Score=56.76 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=36.0
Q ss_pred ccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 187 DISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.++|.+..++.+...+..+. -+-++|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 58999999998888887643 5679999999999999999983
No 166
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.35 E-value=0.028 Score=54.18 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc-cceEEEEEeCCCC-CHHHHHHHHHH
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY-FDCLAWVRVSMLH-DFGKILDDIIK 262 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~-~~~~il~~i~~ 262 (352)
.++.|..-. .-..++|+|.+|+|||||++.+..+ .... -+..+++.+.+.. ...+++.++..
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 456664321 1235789999999999999998773 2222 2445667777664 34556655543
No 167
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.34 E-value=0.0093 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999999999987
No 168
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.32 E-value=0.0088 Score=55.03 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=33.0
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|.+..++.+...+.... ..-+-|+|.+|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 779998876665544444322 223779999999999999999873
No 169
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.32 E-value=0.0068 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=17.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 170
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.31 E-value=0.048 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998875
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.31 E-value=0.0064 Score=50.59 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999876
No 172
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.31 E-value=0.0086 Score=50.27 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 173
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.30 E-value=0.011 Score=54.13 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+++|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3467999999999999999999876
No 174
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.30 E-value=0.0092 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999875
No 175
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.29 E-value=0.0092 Score=48.72 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999977
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.29 E-value=0.0029 Score=59.09 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-cc-CCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV-RV-IIGEDYQLKKSILQ 286 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~-~~-~~~~~~~~l~~~l~ 286 (352)
-.+++|+|..|+|||||.+.+.. .+.......+ +++..+.... ....... .+ ....+.......+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHH
Confidence 45999999999999999998875 2221111222 1222221100 0000000 00 00111123455888
Q ss_pred HHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 287 DYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 287 ~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
..|....=+|++|.+.+ .+.++.+..... .|.-||+||
T Consensus 191 ~aL~~~PdvillDEp~d-~e~~~~~~~~~~---~G~~vl~t~ 228 (356)
T 3jvv_A 191 SALREDPDIILVGEMRD-LETIRLALTAAE---TGHLVFGTL 228 (356)
T ss_dssp HHTTSCCSEEEESCCCS-HHHHHHHHHHHH---TTCEEEEEE
T ss_pred HHhhhCcCEEecCCCCC-HHHHHHHHHHHh---cCCEEEEEE
Confidence 88888888999999998 888777655532 355688887
No 177
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.28 E-value=0.01 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 178
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.28 E-value=0.0098 Score=49.34 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 179
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.27 E-value=0.011 Score=50.45 Aligned_cols=41 Identities=32% Similarity=0.293 Sum_probs=29.9
Q ss_pred cccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 190 EFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+.++..+.+.+.+.. ....++.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555555543 24789999999999999999988763
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.26 E-value=0.0076 Score=49.43 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 181
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.26 E-value=0.012 Score=51.65 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.....|.|.|++|+||||+|+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999976
No 182
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.25 E-value=0.0093 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 183
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.20 E-value=0.017 Score=53.83 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4555666654445688999999999999999998764
No 184
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.18 E-value=0.013 Score=54.90 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=34.9
Q ss_pred CccccccccHHHHHHHHhc----------------------------CCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIE----------------------------GPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.|...+.. .......+-++|.+|+|||++|+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4578988888888877620 011234577999999999999999998
No 185
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.18 E-value=0.012 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 186
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.16 E-value=0.011 Score=52.28 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.15 E-value=0.019 Score=52.76 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+++|.|..|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999865
No 188
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.13 E-value=0.013 Score=51.30 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 189
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.10 E-value=0.02 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++|+|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998865
No 190
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.10 E-value=0.024 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 191
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.08 E-value=0.0062 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|+|..|+||||+++.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 192
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.07 E-value=0.0094 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45889999999999999999876
No 193
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.06 E-value=0.013 Score=49.88 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 194
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.05 E-value=0.014 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++++|..|+|||||.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 195
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.02 E-value=0.015 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++|.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999887
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.00 E-value=0.013 Score=50.33 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999976
No 197
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.00 E-value=0.0082 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3477999999999999999876
No 198
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.00 E-value=0.012 Score=50.84 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 199
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.98 E-value=0.013 Score=49.73 Aligned_cols=23 Identities=4% Similarity=-0.143 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.97 E-value=0.014 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-.+|+|.|+.|+||||+++.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999877
No 201
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.97 E-value=0.0089 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.94 E-value=0.013 Score=49.81 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999986
No 203
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.93 E-value=0.023 Score=48.13 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCceE-EEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEecc
Q 018692 281 KKSILQDYLTNKKY-FIVLDDVFD----ESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 281 l~~~l~~~L~~kr~-LlVLDdvw~----~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
.....++.+.+.+| |||||.+-. ..-..+.+...+.......-||+|+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTG 160 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITG 160 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEEC
Confidence 34456666666666 999999832 0122344444444333455688898
No 204
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.93 E-value=0.016 Score=52.12 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999874
No 205
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.90 E-value=0.017 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.88 E-value=0.016 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+|.|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 207
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.85 E-value=0.014 Score=49.16 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 208
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.84 E-value=0.013 Score=50.50 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 209
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.83 E-value=0.027 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++|+|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999998875
No 210
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.81 E-value=0.015 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~ 230 (352)
-.+++|+|..|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999999887
No 211
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.81 E-value=0.015 Score=50.27 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999873
No 212
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.80 E-value=0.015 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+++|+|.+|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999874
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.78 E-value=0.018 Score=49.15 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.77 E-value=0.016 Score=48.56 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|+|.|..|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.72 E-value=0.12 Score=50.46 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.++|... .....+|+|+|.+|+||||++..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666442 13467999999999999999998873
No 216
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.72 E-value=0.016 Score=49.54 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 217
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.70 E-value=0.017 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999875
No 218
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.69 E-value=0.016 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999875
No 219
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.66 E-value=0.015 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+++|+|..|+|||||.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999876
No 220
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.64 E-value=0.017 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 221
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.59 E-value=0.022 Score=51.93 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+++|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.59 E-value=0.035 Score=53.84 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGP-------SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~-------~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.|.+.|.... ....+++|+|..|+|||||++.+..
T Consensus 272 ~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 272 KEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 445556664321 2457999999999999999999875
No 223
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.58 E-value=0.012 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=16.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~ 230 (352)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999998
No 224
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.56 E-value=0.018 Score=49.20 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 225
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.56 E-value=0.017 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999875
No 226
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.55 E-value=0.015 Score=51.51 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+|.|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.51 E-value=0.021 Score=47.58 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++.|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999886
No 228
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.49 E-value=0.02 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 229
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.44 E-value=0.019 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 230
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.40 E-value=0.02 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.38 E-value=0.02 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 232
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.35 E-value=0.022 Score=54.62 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=35.4
Q ss_pred CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.|...+... +...+-+.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46889888888887766321 11345678999999999999999987
No 233
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.30 E-value=0.022 Score=49.99 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 234
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.29 E-value=0.023 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 235
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.28 E-value=0.022 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.28 E-value=0.036 Score=44.98 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 237
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.26 E-value=0.022 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999875
No 238
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.26 E-value=0.03 Score=44.69 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 239
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.26 E-value=0.025 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 240
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.24 E-value=0.03 Score=52.63 Aligned_cols=53 Identities=9% Similarity=-0.109 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCc-ccccceEEEEEeCCCC
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFDCLAWVRVSMLH 251 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~ 251 (352)
+.++.+..=. .-..++|+|.+|+|||||++.+.+.-.. ...+.+ +++-+.+..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 4566665432 2457899999999999999988762111 112333 356677654
No 241
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.23 E-value=0.023 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999875
No 242
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.23 E-value=0.024 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 243
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.21 E-value=0.029 Score=49.29 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999999874
No 244
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.20 E-value=0.025 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-.++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.20 E-value=0.024 Score=48.48 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 246
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.20 E-value=0.025 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 247
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.19 E-value=0.024 Score=48.61 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999976
No 248
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.18 E-value=0.028 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 249
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.18 E-value=0.025 Score=48.83 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 250
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.18 E-value=0.034 Score=45.96 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998864
No 251
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.17 E-value=0.026 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 252
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.17 E-value=0.024 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 253
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.16 E-value=0.024 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 254
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.12 E-value=0.021 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.11 E-value=0.027 Score=52.02 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 256
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.09 E-value=0.026 Score=50.07 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 257
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.08 E-value=0.044 Score=47.57 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-..|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.07 E-value=0.029 Score=48.73 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 259
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.06 E-value=0.026 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 260
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.05 E-value=0.066 Score=51.77 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHccCCcccccce-EEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--c
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDC-LAWVRVSMLH-DFGKILDDIIKSVMPPARV--R 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~ 271 (352)
+.++.|..=. .-.-++|.|.+|+|||+|| ..+.+.. +-+. ++++-+.+.. .+.++.+++...-...... .
T Consensus 151 raID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 4566665421 2345689999999999995 5777742 2343 4777777765 4456666666532222111 0
Q ss_pred cCCCCC-HHHH-----HHHHHHHc--CCceEEEEEeCCCC
Q 018692 272 VIIGED-YQLK-----KSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 272 ~~~~~~-~~~l-----~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...+.. .... .-.+.+++ +++..||++||+-.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 011121 1111 12233333 57999999999843
No 261
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.05 E-value=0.029 Score=50.57 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 262
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.05 E-value=0.29 Score=47.50 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCc------------------
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPAR------------------ 269 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~------------------ 269 (352)
.-.++.|.|.+|+||||||.++..+..... =..++|++... +..++...++....+-..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 317 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 346788999999999999998876432221 12467776544 455666665443221110
Q ss_pred ---------ccc----CCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCC
Q 018692 270 ---------VRV----IIGEDYQLKKSILQDYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 270 ---------~~~----~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~ 303 (352)
... ....+..++...++..... +--+||+|.+..
T Consensus 318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence 000 0124667777777766543 445999999853
No 263
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.03 E-value=0.026 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 264
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.03 E-value=0.22 Score=43.01 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=56.0
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHH-ccCCccccc-ceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTY-NNNHVKFYF-DCLAWVRVSMLHDFGKILDDIIKSVMPPARV- 270 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~-~~~~~~~~F-~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~- 270 (352)
..++++..+..+ ..+.|+|..|+||||+..... +........ .+.+.+..........+.+.+...++.....
T Consensus 65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 355666666543 478899999999998665543 211111112 2234333333333345555565544432111
Q ss_pred ---------------ccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 271 ---------------RVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 271 ---------------~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
...--.+...+...+...+.+- -+||+|.+..
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0001135566667776654443 3789999965
No 265
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.01 E-value=0.034 Score=53.20 Aligned_cols=37 Identities=30% Similarity=0.250 Sum_probs=27.5
Q ss_pred HHHHHHHHhcC------C-CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEG------P-SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~------~-~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.+++..+ . ....+|.|+|.+|+||||++..+..
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666533 1 2356999999999999999988775
No 266
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.00 E-value=0.028 Score=48.09 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=48.4
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc-----ccCCCCCHHHHHHHH
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV-----RVIIGEDYQLKKSIL 285 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 285 (352)
+|.|.|++|+||||.|+.+... |.. ..+ +..+++++-+..-...... ....--+.+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g~-~~i------stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KGF-VHI------STGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HCC-EEE------EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HCC-eEE------cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 6789999999999999998873 322 122 2345555433321100000 001122345667778
Q ss_pred HHHcCCceEEEEEeCCCCCchhHHHH
Q 018692 286 QDYLTNKKYFIVLDDVFDESEIWDDL 311 (352)
Q Consensus 286 ~~~L~~kr~LlVLDdvw~~~~~~~~l 311 (352)
.+.+..... .|||+.-....+.+.+
T Consensus 69 ~~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HHhhccCCc-eEecCCchhHHHHHHH
Confidence 888866544 5789986533333333
No 267
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.98 E-value=0.2 Score=47.05 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
--+.++.|..=. .-.-++|+|.+|+|||+|++.+.+
T Consensus 162 GiraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 162 STRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred cchhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 346778776532 234678999999999999998887
No 268
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.98 E-value=0.028 Score=49.61 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 269
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.97 E-value=0.037 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|.|+|+.|+|||||+..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 270
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.97 E-value=0.027 Score=50.17 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999876
No 271
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.95 E-value=0.027 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999999875
No 272
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.94 E-value=0.022 Score=54.49 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCccc-ccc-eEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--c
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFD-CLAWVRVSMLH-DFGKILDDIIKSVMPPARV--R 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~ 271 (352)
+.++.|..=.. =.-++|.|..|+|||+|+..+.+...... +=+ .++++-+.+.. .+.++.+++...-...... .
T Consensus 140 raID~l~pigr-GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 140 SAIDHLNTLVR-GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHHTTSCCBT-TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred eEEeccccccc-CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 45555543211 23457889999999999999988544311 111 56677777654 4466666655431111000 0
Q ss_pred cCCCCCH-HH-----HHHHHHHHcC---CceEEEEEeCCCC
Q 018692 272 VIIGEDY-QL-----KKSILQDYLT---NKKYFIVLDDVFD 303 (352)
Q Consensus 272 ~~~~~~~-~~-----l~~~l~~~L~---~kr~LlVLDdvw~ 303 (352)
...++.. .. ..-.+.++++ ++..||++||+-.
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0112221 11 1123445543 7899999999843
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.93 E-value=0.028 Score=50.46 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999875
No 274
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.92 E-value=0.2 Score=46.12 Aligned_cols=91 Identities=9% Similarity=-0.103 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCc-------------------
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPAR------------------- 269 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~------------------- 269 (352)
-.++.|.|.+|+||||||..+..+... +=..++|++. .-+..++...++.....-..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence 458889999999999999998764222 1124566654 34556666666443211100
Q ss_pred -------cc---cCCCCCHHHHHHHHHHHcCC--ceEEEEEeCCCC
Q 018692 270 -------VR---VIIGEDYQLKKSILQDYLTN--KKYFIVLDDVFD 303 (352)
Q Consensus 270 -------~~---~~~~~~~~~l~~~l~~~L~~--kr~LlVLDdvw~ 303 (352)
.. .....+..++...++...+. +--+||+|-+..
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql 167 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL 167 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence 00 01233566777766665433 467889997643
No 275
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.91 E-value=0.029 Score=49.61 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 276
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.87 E-value=0.032 Score=44.54 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 277
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.84 E-value=0.03 Score=48.49 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998873
No 278
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.83 E-value=0.061 Score=49.61 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++.+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555544334578999999999999999999873
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.82 E-value=0.035 Score=49.31 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-.+++|+|..|+|||||.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 357999999999999999999876
No 280
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.80 E-value=0.04 Score=45.44 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...|+++|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 281
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.75 E-value=0.036 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346789999999999999998764
No 282
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.74 E-value=0.066 Score=51.86 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=50.5
Q ss_pred eEEEEEcCCCccHHHHH-HHHHccCCcccccc-eEEEEEeCCCCC-HHHHHHHHHHhcCC--------CCccccCCCC--
Q 018692 210 SVVAILDSSGFDKTAFA-ADTYNNNHVKFYFD-CLAWVRVSMLHD-FGKILDDIIKSVMP--------PARVRVIIGE-- 276 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~il~~i~~~l~~--------~~~~~~~~~~-- 276 (352)
.-++|.|.+|+|||+|| ..+.+.. . -+ .++++-+.+..+ +.++.+++...-.. ..+++.....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45689999999999995 5777743 2 34 357777777653 34555554432111 0000000011
Q ss_pred --CHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 277 --DYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 277 --~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
.--...+.+++ +++..||++||+-.
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 11233444555 58999999999854
No 283
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.73 E-value=0.035 Score=44.58 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998864
No 284
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.72 E-value=0.049 Score=51.13 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+++-+.-.-..-.+++|+|+.|+|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433333456999999999999999999986
No 285
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.71 E-value=0.036 Score=50.79 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999887
No 286
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.70 E-value=0.022 Score=51.51 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=18.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 287
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.70 E-value=0.06 Score=43.75 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 288
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.68 E-value=0.065 Score=49.49 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+.+.+.....+..+++|+|.+|+|||||+..+..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344444443334678999999999999999999853
No 289
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.64 E-value=0.034 Score=49.64 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999885
No 290
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.64 E-value=0.05 Score=52.69 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHccCCcccccce-EEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--c
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDC-LAWVRVSMLH-DFGKILDDIIKSVMPPARV--R 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~ 271 (352)
+.++.|..=. .-.-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+.+.. .+.++.+++...-...... .
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 4566665421 1245789999999999995 5777733 2443 5777777765 4456666665421111100 0
Q ss_pred cCCCCC-HHHH-----HHHHHHHc--CCceEEEEEeCCCC
Q 018692 272 VIIGED-YQLK-----KSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 272 ~~~~~~-~~~l-----~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
...+.. .... .-.+.+++ +++..||++||+-.
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 011111 1111 11233333 57999999999843
No 291
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.63 E-value=0.5 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-..++|||..|+|||||++.+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45789999999999999999875
No 292
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.60 E-value=0.043 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999988765
No 293
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.58 E-value=0.039 Score=44.19 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHccC
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.-|.++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999987643
No 294
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.58 E-value=0.038 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999865
No 295
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.58 E-value=0.051 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998864
No 296
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.56 E-value=0.038 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.54 E-value=0.038 Score=50.25 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+++-+.-.=+.-.+++|+|..|+|||||++.+..
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3443333323356899999999999999999875
No 298
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.49 E-value=0.068 Score=45.67 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+..++..- +...-+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHH
Confidence 55566666542 2234688999999999999998887
No 299
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.47 E-value=0.039 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+.++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999853
No 300
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.47 E-value=0.039 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4889999999999999999985
No 301
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.44 E-value=0.057 Score=45.32 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++.+.-... ..-|+++|.+|+|||||.+.+.++
T Consensus 14 ~~l~~~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCC-CcEEEEECCCCCCHHHHHHHHhcC
Confidence 34555533322 345789999999999999998763
No 302
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.44 E-value=0.047 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999876
No 303
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.44 E-value=0.19 Score=45.68 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
-.++.|.|.+|+||||||..+..+..... ..++|++.. -+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46888999999999999998875422222 467777655 3455666665543
No 304
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.44 E-value=0.048 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 57899999999999999988765
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.43 E-value=0.032 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999875
No 306
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.43 E-value=0.038 Score=52.52 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.+.|..-.....+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444433223467999999999999999999987
No 307
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.053 Score=44.94 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999998874
No 308
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.40 E-value=0.045 Score=54.66 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=35.8
Q ss_pred CccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 77899888887777777654 3788999999999999999987
No 309
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.38 E-value=0.047 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6888899999999999988765
No 310
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.38 E-value=0.042 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 311
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.37 E-value=0.053 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.36 E-value=0.044 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 313
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.35 E-value=0.042 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|.+|+|||||++.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 314
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.34 E-value=0.05 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36889999999999999999976
No 315
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.33 E-value=0.046 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHccC
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999988653
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.32 E-value=0.046 Score=43.93 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHccC
Q 018692 211 VVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
No 317
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.29 E-value=0.047 Score=43.62 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988764
No 318
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.27 E-value=0.04 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.++|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4689999999999999998653
No 319
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.25 E-value=0.048 Score=44.44 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...-|.|+|.+|+|||||...+.++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3556889999999999999988764
No 320
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.24 E-value=0.045 Score=44.82 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 321
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.23 E-value=0.053 Score=47.18 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999873
No 322
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.15 E-value=0.044 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 323
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.14 E-value=0.061 Score=43.31 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999864
No 324
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.14 E-value=0.04 Score=52.99 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccc--cceEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--c
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFY--FDCLAWVRVSMLH-DFGKILDDIIKSVMPPARV--R 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~ 271 (352)
+.++.|..=. .=.-++|.|.+|+|||+|+..+.++....+. =+..+++-+.+.. .+.++.+++...-...... .
T Consensus 141 r~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~ 219 (469)
T 2c61_A 141 STIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFL 219 (469)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred Eeeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEE
Confidence 4566665421 1234577899999999999999885443221 1356677777654 4566777776532111110 0
Q ss_pred cCCCCCH-H-----HHHHHHHHHcC---CceEEEEEeCC
Q 018692 272 VIIGEDY-Q-----LKKSILQDYLT---NKKYFIVLDDV 301 (352)
Q Consensus 272 ~~~~~~~-~-----~l~~~l~~~L~---~kr~LlVLDdv 301 (352)
...++.. . ...-.+.++++ ++..||++||+
T Consensus 220 ~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 220 NLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0111111 1 11223444443 69999999996
No 325
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.13 E-value=0.049 Score=44.94 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999998764
No 326
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.11 E-value=0.037 Score=52.99 Aligned_cols=105 Identities=11% Similarity=0.156 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcc--------cccc-eEEEEEeCCCC-CHHHHHHHHHHhcCC
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVK--------FYFD-CLAWVRVSMLH-DFGKILDDIIKSVMP 266 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~il~~i~~~l~~ 266 (352)
+.++.|..=. .=.-++|.|.+|+|||+|+..+.+..... ++=+ .++++-+.+.. .+.++.+++...-..
T Consensus 136 raID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~ 214 (464)
T 3gqb_B 136 STIDVMNTLV-RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGAL 214 (464)
T ss_dssp HHHHTTSCCB-TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGG
T ss_pred eeeecccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccc
Confidence 4555554321 12345788999999999999998865441 1112 46667777654 445666665442101
Q ss_pred CCcc--cc-CCCCCHHHH-----HHHHHHHcC---CceEEEEEeCCC
Q 018692 267 PARV--RV-IIGEDYQLK-----KSILQDYLT---NKKYFIVLDDVF 302 (352)
Q Consensus 267 ~~~~--~~-~~~~~~~~l-----~~~l~~~L~---~kr~LlVLDdvw 302 (352)
.... .. .+....... .-.+.++++ ++..||++||+-
T Consensus 215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0000 00 111122221 223445543 789999999984
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.11 E-value=0.046 Score=45.19 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999987765
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.09 E-value=0.048 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999976
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.07 E-value=0.053 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 330
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.05 E-value=0.053 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999877654
No 331
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.04 E-value=0.051 Score=50.68 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999875
No 332
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.03 E-value=0.057 Score=44.74 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+...|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 333
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.01 E-value=0.053 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.01 E-value=0.061 Score=44.38 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 35578899999999999999998753
No 335
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.01 E-value=0.11 Score=46.01 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
+++.+.........|.++|.+|+|||||...+.+..
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444444445678899999999999999998653
No 336
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.00 E-value=0.13 Score=57.81 Aligned_cols=88 Identities=13% Similarity=-0.022 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQ 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 286 (352)
.-+++-|+|++|+|||+||.++..... ..=...+|+.+...++... ++.++.....-. ......++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456888999999999999998876322 2212467888888877655 444543221100 01223355666666
Q ss_pred HHcC-CceEEEEEeCCC
Q 018692 287 DYLT-NKKYFIVLDDVF 302 (352)
Q Consensus 287 ~~L~-~kr~LlVLDdvw 302 (352)
...+ .+--+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5544 466799999984
No 337
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.00 E-value=0.057 Score=43.92 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..--|.|+|.+|+|||||...+.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3556789999999999999998764
No 338
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.99 E-value=0.098 Score=46.19 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
++.+.+.....+...|+++|..|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444454443445678899999999999999988653
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.98 E-value=0.055 Score=43.45 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 340
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.98 E-value=0.064 Score=45.48 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
....|.|+|.+|+|||||...+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999988743
No 341
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.98 E-value=0.056 Score=43.94 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 342
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.97 E-value=0.051 Score=43.51 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|.++|.+|+|||||...+.++
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998754
No 343
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.97 E-value=0.055 Score=43.93 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
..-|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999988653
No 344
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.96 E-value=0.093 Score=44.41 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=45.5
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQDYL 289 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~~L 289 (352)
.|+|=|.-|+||||.++.+++ ..+..--.+....-.......+.+++++..-........ .-..+..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999987 444332233334333333344555555543221110000 00111223344555556
Q ss_pred CCceEEEEEeCC
Q 018692 290 TNKKYFIVLDDV 301 (352)
Q Consensus 290 ~~kr~LlVLDdv 301 (352)
...+ .+|.|--
T Consensus 80 ~~g~-~Vi~DRy 90 (197)
T 3hjn_A 80 SEGY-AVLLDRY 90 (197)
T ss_dssp TTTC-EEEEESC
T ss_pred HCCC-eEEeccc
Confidence 5544 4677764
No 345
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.94 E-value=0.056 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 446789999999999999888764
No 346
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.93 E-value=0.093 Score=50.46 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 193 NSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+..+.+.+.+...+ +.+.|.|.+|+||||++..+..
T Consensus 32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 33444444555433 3888999999999999998876
No 347
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.92 E-value=0.067 Score=43.82 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 348
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.92 E-value=0.12 Score=44.21 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-..|.|.|..|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36889999999999999999987
No 349
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.92 E-value=0.058 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 350
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.92 E-value=0.097 Score=42.46 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999998865
No 351
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.91 E-value=0.068 Score=43.82 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHccC
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998653
No 352
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.90 E-value=0.058 Score=43.48 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999764
No 353
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.90 E-value=0.054 Score=44.57 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 354
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.89 E-value=0.048 Score=44.51 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 355
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.89 E-value=0.041 Score=48.61 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+...|.|.|..|+||||+++.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 356
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.86 E-value=0.057 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999875
No 357
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.85 E-value=0.057 Score=44.31 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.++
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 358
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.84 E-value=0.069 Score=43.64 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998854
No 359
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.83 E-value=0.056 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 360
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.81 E-value=0.057 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..|.++|.+|+|||||...+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998864
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.80 E-value=0.063 Score=44.31 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+.+|+|..|+|||||...++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999863
No 362
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.78 E-value=0.033 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.018 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-..++|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999999988763
No 363
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.76 E-value=0.06 Score=43.69 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 364
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.75 E-value=0.061 Score=44.00 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.++|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988754
No 365
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.71 E-value=0.062 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
..-|.|+|.+|+|||||...+.++.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4567899999999999999988643
No 366
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.71 E-value=0.061 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999999976
No 367
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.67 E-value=0.46 Score=45.43 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=32.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
.-.++.|.|.+|+||||||.++..+....+ ..++|++...+ ..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms--~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMG--KKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSC--TTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCC--HHHHHHHHHH
Confidence 345888999999999999998876432221 24666655433 3344444443
No 368
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.67 E-value=0.063 Score=44.53 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 369
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.65 E-value=0.061 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999976
No 370
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.64 E-value=0.063 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999875
No 371
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.63 E-value=0.065 Score=43.74 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999998864
No 372
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.15 Score=42.02 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..+.+ +.. ....-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~--~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFN--HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHT--TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcC--CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 333 23566789999999999999999854
No 373
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.62 E-value=0.064 Score=46.37 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc----------c-------
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV----------R------- 271 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~----------~------- 271 (352)
-.++.|.|.+|+|||||+..+.... ...=...+|++... ....+.+.+ ..++..... .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 4588999999999999988775421 11112466666544 344444433 233222100 0
Q ss_pred ---------cCCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCC----chhH----HHHHhhCCCCCCCcEEEecc
Q 018692 272 ---------VIIGEDYQLKKSILQDYLTN-KKYFIVLDDVFDE----SEIW----DDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 272 ---------~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~~----~~~~----~~l~~~l~~~~~gsrIivTT 328 (352)
.....+...+...+.+.+.. +.-++|+|.+... .... ..+...+ ...|..||+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~--~~~~~~vi~~~ 170 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL--AGTGCTSIFVS 170 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH--HHTTCEEEEEE
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH--HHCCCeEEEEe
Confidence 00123555666666666542 3448999987531 1112 2222222 12467788887
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.62 E-value=0.067 Score=43.61 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 375
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.62 E-value=0.076 Score=49.23 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999875
No 376
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.61 E-value=0.065 Score=44.09 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 377
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.57 E-value=0.065 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...-|.|+|.+|+|||||...+..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998764
No 378
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.56 E-value=0.056 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999986
No 379
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.55 E-value=0.13 Score=45.79 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-+..||....+...-+.++|++|+|||.+|..+.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 446666665423345688999999999999999987
No 380
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.52 E-value=0.065 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999999975
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.51 E-value=0.055 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~ 230 (352)
...-|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999999985
No 382
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.069 Score=43.48 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4467899999999999999987643
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.49 E-value=0.067 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999875
No 384
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.49 E-value=0.066 Score=44.72 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..-|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44577999999999999998776
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.47 E-value=0.07 Score=44.45 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 386
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.47 E-value=0.088 Score=43.55 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
..--|.|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999988653
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.069 Score=44.37 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4467899999999999999987643
No 388
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.45 E-value=0.085 Score=44.11 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3556889999999999999998764
No 389
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.43 E-value=0.13 Score=53.03 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=58.1
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHH
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFG 254 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (352)
.++.|.++.+++|.+.+.-. -...+-+-++|++|.|||.||+.+.+ .....| +.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----cc
Confidence 67778888888877765432 11234456899999999999999998 444433 2222 22
Q ss_pred HHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 255 KILDDIIKSVMPPARVRVIIGEDYQLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 255 ~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
++ +... -..++..+...+...-+...+.|++|++..
T Consensus 546 ~l----~s~~---------vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 EL----LTMW---------FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HTTT---------CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred hh----hccc---------cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 22 2111 123344444444444456789999999854
No 390
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.42 E-value=0.074 Score=44.47 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467899999999999999988653
No 391
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.37 E-value=0.071 Score=43.83 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35667899999999999999998654
No 392
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.36 E-value=0.077 Score=48.04 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999998764
No 393
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.36 E-value=0.074 Score=44.05 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445789999999999999999875
No 394
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.31 E-value=0.15 Score=49.83 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCC-HHHHHHHH
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHD-FGKILDDI 260 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~il~~i 260 (352)
+.++.|..=. .-.-++|.|..|+|||+|++.+.+.. +-+..+++-+.+..+ +.++++++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 5677775421 23567899999999999999988742 235678888887765 35555554
No 395
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.31 E-value=0.088 Score=51.01 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHccCCc----ccccc-eEEEEEeCCCC-CHHHHHHHHHHhcCCCCc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFA-ADTYNNNHV----KFYFD-CLAWVRVSMLH-DFGKILDDIIKSVMPPAR 269 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~il~~i~~~l~~~~~ 269 (352)
+.++.|..=. .-.-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+.+.. .+.++.+++...-.....
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 5666665421 2245689999999999995 566663211 12344 46778888765 445666666542211111
Q ss_pred c--ccCCCCC-HHHH-----HHHHHHHc--CCceEEEEEeCCCC
Q 018692 270 V--RVIIGED-YQLK-----KSILQDYL--TNKKYFIVLDDVFD 303 (352)
Q Consensus 270 ~--~~~~~~~-~~~l-----~~~l~~~L--~~kr~LlVLDdvw~ 303 (352)
. ....+.. .... .-.+.+++ +++..||++||+-.
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0 0011111 1111 11233333 57999999999844
No 396
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.28 E-value=0.051 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 397
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.28 E-value=0.062 Score=45.80 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 398
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.27 E-value=0.074 Score=44.92 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999988643
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.26 E-value=0.074 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
..-|.|+|.+|+|||||...+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4567899999999999999988653
No 400
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.23 E-value=0.1 Score=44.79 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
....|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998864
No 401
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.22 E-value=0.075 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.++
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999865
No 402
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.22 E-value=0.077 Score=43.89 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999999864
No 403
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.20 E-value=0.57 Score=44.71 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHh
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKS 263 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~ 263 (352)
.-.++.|.|.+|+||||||..+..+...... ..++|++... +...+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCC--CHHHHHHHHHHH
Confidence 3468889999999999999988764222111 2466765543 455666665543
No 404
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.19 E-value=0.078 Score=43.80 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
..-|.|+|.+|+|||||...+.++.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999987653
No 405
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.19 E-value=0.11 Score=42.77 Aligned_cols=35 Identities=20% Similarity=-0.024 Sum_probs=25.0
Q ss_pred HHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 198 LFDLLIEGP-SGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 198 l~~~L~~~~-~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+.++|.--. ...--|.|+|.+|+|||||...+.++
T Consensus 10 ~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 10 LKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp HHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcC
Confidence 455443222 33456889999999999999998654
No 406
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.18 E-value=0.077 Score=44.27 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 407
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.17 E-value=0.079 Score=44.00 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4467899999999999999988753
No 408
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.17 E-value=0.076 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998874
No 409
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.17 E-value=0.087 Score=47.86 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 206 PSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 206 ~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+...+.|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345789999999999999999998864
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.17 E-value=0.091 Score=43.57 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.....|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 346678899999999999999988653
No 411
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.15 E-value=0.061 Score=48.79 Aligned_cols=22 Identities=14% Similarity=0.428 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+ +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 8999999999999999875
No 412
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.13 E-value=0.083 Score=43.65 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|..|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998754
No 413
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.12 E-value=0.081 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998864
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.12 E-value=0.24 Score=55.66 Aligned_cols=103 Identities=14% Similarity=-0.028 Sum_probs=63.9
Q ss_pred cHHHHHHHHh-cCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc
Q 018692 194 SGEKLFDLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV 272 (352)
Q Consensus 194 ~~~~l~~~L~-~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~ 272 (352)
-...|-..|. ..=+.-.++-|.|.+|+||||||.++..+... .=..++|++....++... ++.++.......
T Consensus 367 G~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~ 439 (2050)
T 3cmu_A 367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL 439 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE
T ss_pred CCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeE
Confidence 3445555554 22123568899999999999999998774322 123578888888777532 455554432211
Q ss_pred -CCCCCHHHHHHHHHHHcC-CceEEEEEeCCCC
Q 018692 273 -IIGEDYQLKKSILQDYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 273 -~~~~~~~~l~~~l~~~L~-~kr~LlVLDdvw~ 303 (352)
....+.+++.+.++...+ .+--+||+|-+..
T Consensus 440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 123456677777665543 4556999999854
No 415
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.11 E-value=0.073 Score=44.38 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 416
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.09 E-value=0.08 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 417
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.09 E-value=0.22 Score=55.16 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQ 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 286 (352)
.-.++-|.|.+|+||||||.++..+.. ..=..++|++...+++.. .++.++....... ....+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 356888999999999999999876322 222368899888887753 2455555433211 12335566666666
Q ss_pred HHcC-CceEEEEEeCCCC
Q 018692 287 DYLT-NKKYFIVLDDVFD 303 (352)
Q Consensus 287 ~~L~-~kr~LlVLDdvw~ 303 (352)
.... .+--+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 5543 3555999999865
No 418
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.06 E-value=0.082 Score=44.17 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...-|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567789999999999999998764
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.06 E-value=0.08 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.083 Score=43.60 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|.|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 421
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.05 E-value=0.45 Score=46.01 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=57.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHccCCcccccc-eEEEEEeCCCC-CHHHHHHHHHHhcCCCCcc--c
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFD-CLAWVRVSMLH-DFGKILDDIIKSVMPPARV--R 271 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~il~~i~~~l~~~~~~--~ 271 (352)
+.++.|..=. .-.-++|.|..|+|||+|+ ..+.|. . +-+ .++++-+.+.. .+.++.+++...-...... .
T Consensus 151 kaID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 4666665421 1235689999999999996 567663 1 233 35788888765 3456666655432221111 0
Q ss_pred cCCCCCH----------HHHHHHHHHHcCCceEEEEEeCCCC
Q 018692 272 VIIGEDY----------QLKKSILQDYLTNKKYFIVLDDVFD 303 (352)
Q Consensus 272 ~~~~~~~----------~~l~~~l~~~L~~kr~LlVLDdvw~ 303 (352)
...+... -...+.+++ +++..||++||+-.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 226 ATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 0111111 123334443 58999999999854
No 422
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.04 E-value=0.11 Score=44.97 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=18.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-..|.|.|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999987
No 423
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.02 E-value=0.084 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.|.|+.|+||||||..+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 35889999999999999998875
No 424
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.078 Score=43.96 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|.|+|.+|+|||||...+.++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4457899999999999999988643
No 425
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.95 E-value=0.08 Score=43.91 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456789999999999999998764
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.94 E-value=0.081 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-..++|.|++|+||||+|+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 427
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.93 E-value=0.1 Score=46.27 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 428
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.92 E-value=0.087 Score=49.30 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEE-EEEeCCCCCHHHHHHHHHHhcCCCCc-cccC-CCCCHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLA-WVRVSMLHDFGKILDDIIKSVMPPAR-VRVI-IGEDYQLKKSI 284 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~il~~i~~~l~~~~~-~~~~-~~~~~~~l~~~ 284 (352)
.-.+++|+|..|+|||||.+.+.. .+.......+ ++.- +... .+..... -++. -+.+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~--~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIED--PIEY---------VFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEES--SCCS---------CCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecc--cHhh---------hhccCceEEEeeecCCCHHHHHHH
Confidence 356899999999999999999876 2211111222 2221 1110 0000000 0000 00011223456
Q ss_pred HHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 285 LQDYLTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 285 l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
++..|....=+|++|.+.+ .+.+..+.... ..|.-|+.|+
T Consensus 202 l~~~L~~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~ 241 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTL 241 (372)
T ss_dssp HHHHTTSCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECC
T ss_pred HHHHhhhCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEE
Confidence 7777776677889999987 65554433333 2355577776
No 429
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.91 E-value=0.12 Score=43.96 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|+|+||+|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999998765
No 430
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.90 E-value=0.084 Score=49.74 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45899999999999999999875
No 431
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.87 E-value=0.098 Score=51.25 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...+|.++|++|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999876
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.85 E-value=0.09 Score=44.28 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-|.|+|.+|+|||||...+.++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999998864
No 433
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.85 E-value=0.077 Score=44.12 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|..|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 434
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.84 E-value=0.088 Score=44.15 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 435
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.82 E-value=0.075 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.++.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 47899999999999999999987
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.82 E-value=0.059 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.039 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
...-|.|+|.+|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356678999999999999999875
No 437
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.80 E-value=0.1 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-+.|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999886
No 438
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.75 E-value=0.072 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35889999999999999999986
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.75 E-value=0.091 Score=44.59 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 440
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.75 E-value=0.088 Score=48.78 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..++.+. .=..-.+++|+|..|+|||||.+.+.+.
T Consensus 60 ~ald~ll-~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 60 RAIDGLL-TCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHHS-CEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeee-eecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455552 2112458999999999999999999984
No 441
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.74 E-value=0.11 Score=43.81 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|.|+|.+|+|||||...+.++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 4456799999999999998887643
No 442
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.73 E-value=0.12 Score=44.76 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998753
No 443
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.71 E-value=0.16 Score=48.26 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 196 EKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 196 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+++.+.. ..-.+++|+|..|+|||||.+.+..
T Consensus 156 ~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 156 HDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 334444443 3357899999999999999999865
No 444
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.71 E-value=0.085 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 445
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.64 E-value=0.098 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=18.8
Q ss_pred eEEEEE-cCCCccHHHHHHHHHc
Q 018692 210 SVVAIL-DSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~Iv-G~gGvGKTtLA~~v~~ 231 (352)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 688888 5699999999988765
No 446
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.62 E-value=0.098 Score=43.90 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 556889999999999999998764
No 447
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.61 E-value=0.17 Score=44.22 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccCCcc-cccceEEEEEeCCCCCHHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAWVRVSMLHDFGKILDDII 261 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~il~~i~ 261 (352)
-..|.|.|..|+||||+++.+.+ ... ..+.......-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999987 332 2355344443333222334445444
No 448
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.58 E-value=0.099 Score=43.80 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.-|.|+|.+|+|||||...+.++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 449
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.1 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999999874
No 450
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.53 E-value=0.079 Score=43.82 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987654
No 451
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.53 E-value=0.1 Score=43.86 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 452
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.49 E-value=0.1 Score=44.00 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.++
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 453
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.49 E-value=0.1 Score=43.29 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998865
No 454
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.47 E-value=0.098 Score=44.38 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 455
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.46 E-value=0.062 Score=44.03 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=10.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
..-|.|+|.+|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 456
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.44 E-value=0.099 Score=50.98 Aligned_cols=25 Identities=4% Similarity=-0.020 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+..+|.+.|+.|+||||+|+.+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 457
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.42 E-value=0.2 Score=42.98 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=32.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCccc-ccceEEEEEeCCCCCHHHHHHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKF-YFDCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
..|.+.|..|+||||+++.+.+. ... .+..+....-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~--l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET--LEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 57889999999999999999873 322 2323333333333334556666665
No 458
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.36 E-value=0.12 Score=43.80 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998864
No 459
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.36 E-value=0.081 Score=48.64 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=55.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQDY 288 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~~ 288 (352)
.+++|+|..|+|||||.+.+..- +.. -...+.+.-...... ........ ... ........+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~-----------~~~~~~i~~~~g-gg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVF-----------KHHKNYTQLFFG-GNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCC-----------SSCSSEEEEECB-TTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeecccc-----------ccchhEEEEEeC-CChhHHHHHHHH
Confidence 47899999999999999999873 221 123344332111110 00000000 000 112334556677
Q ss_pred cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEecc
Q 018692 289 LTNKKYFIVLDDVFDESEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 289 L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
|..+.=+|+||.+.+ .+.++.+.. +..+ +.-+|+||
T Consensus 237 L~~~p~ilildE~~~-~e~~~~l~~-~~~g--~~tvi~t~ 272 (330)
T 2pt7_A 237 LRMRPDRIILGELRS-SEAYDFYNV-LCSG--HKGTLTTL 272 (330)
T ss_dssp TTSCCSEEEECCCCS-THHHHHHHH-HHTT--CCCEEEEE
T ss_pred hhhCCCEEEEcCCCh-HHHHHHHHH-HhcC--CCEEEEEE
Confidence 777788899999988 777765543 3222 22266676
No 460
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.34 E-value=0.11 Score=44.65 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcc
Q 018692 211 VVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-|.|+|.+|||||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3669999999999999987654
No 461
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.33 E-value=0.095 Score=49.90 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 018692 212 VAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~ 231 (352)
++|+|..|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999976
No 462
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.26 E-value=0.09 Score=44.66 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
+...|.|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998764
No 463
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.24 E-value=0.12 Score=49.86 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
..+|.++|++|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999876
No 464
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.24 E-value=0.11 Score=48.20 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.+++|+|.+|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999873
No 465
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.23 E-value=0.11 Score=47.07 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHH
Q 018692 195 GEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTY 230 (352)
Q Consensus 195 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~ 230 (352)
.++|.+.+.. .+++++|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 5677776642 478999999999999999998
No 466
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.23 E-value=0.11 Score=44.08 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345779999999999999998764
No 467
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.22 E-value=0.096 Score=45.30 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018692 211 VVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.|+|.|-||+||||+|..+..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 367789999999999998875
No 468
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.20 E-value=0.27 Score=48.29 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCC-CHHHHHHHH
Q 018692 197 KLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLH-DFGKILDDI 260 (352)
Q Consensus 197 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~i 260 (352)
+.++.|..=. .=.-++|.|..|+|||+|+..+.+.. +-+..+++-+.+.. .+.++++++
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 5677776532 23577899999999999999998743 23567778777663 344455443
No 469
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.16 E-value=0.087 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||++.++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45889999999999999999876
No 470
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.10 E-value=0.14 Score=46.40 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998864
No 471
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.05 E-value=0.38 Score=46.33 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhhhcccccCCccccccchhhhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCccc
Q 018692 96 PEILEILEDINDFVYESEEAIDTFFINIMQQQTSENESESSTNMALHDGLHSEIIDIRNRMQQLPPGDNGFDISEKGNKI 175 (352)
Q Consensus 96 ~~v~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~ 175 (352)
..+..|.+++.++.-.+|-.||--. .. ....+..+..++..+..+++.+.....
T Consensus 163 ~~~~~~r~~l~~~~a~iEa~iDf~e-d~--------------~~~~~~~~~~~i~~l~~~l~~~~~~~~----------- 216 (462)
T 3geh_A 163 HPIRQLRANCLDILAEIEARIDFEE-DL--------------PPLDDEAIISDIENIAAEISQLLATKD----------- 216 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSS-SS--------------CCCCTTTHHHHHHHHHHHHHHHTTTHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc-cC--------------ChhhHHHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 6788899999888888887776322 11 112345677778888887776532110
Q ss_pred cccCCCCCCCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 176 IRLLSEGKPRLDISEFENSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 176 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.. +.+.. +++ |+|+|.+|+|||||...+...
T Consensus 217 -------------------~~---~~~r~---~~k-V~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 217 -------------------KG---ELLRT---GLK-VAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp -------------------HH---HHHHH---CEE-EEEEECTTSSHHHHHHHHHHH
T ss_pred -------------------hh---hhhcC---CCE-EEEEcCCCCCHHHHHHHHhCC
Confidence 01 11111 243 789999999999999998764
No 472
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.95 E-value=0.098 Score=47.27 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 207 SGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 207 ~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.....|+|+|..|+|||||...+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 457789999999999999999997643
No 473
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.91 E-value=0.15 Score=44.63 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.87 E-value=0.12 Score=44.77 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=52.9
Q ss_pred EEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcc------ccCCCCCHHHHHHH
Q 018692 211 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARV------RVIIGEDYQLKKSI 284 (352)
Q Consensus 211 vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~------~~~~~~~~~~l~~~ 284 (352)
.|.+.|.||+||||+|..+.... ...-++. ..+.+....+... ...+..+...... ......+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~V-~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVRV-MAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCCE-EEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCCE-EEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 46688999999999988877622 1222333 3344444333321 1112222211100 00011333332
Q ss_pred HHHHcCCceEEEEEeCCCCC-------chhHHHHHhhCCCCCCCcEEEecc
Q 018692 285 LQDYLTNKKYFIVLDDVFDE-------SEIWDDLEEVLPENQNGSRVLILS 328 (352)
Q Consensus 285 l~~~L~~kr~LlVLDdvw~~-------~~~~~~l~~~l~~~~~gsrIivTT 328 (352)
+. .+.=++|+|++-.. ...|.++...++. |--++.|+
T Consensus 81 L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~ 124 (228)
T 2r8r_A 81 LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTV 124 (228)
T ss_dssp HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEE
T ss_pred Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEc
Confidence 22 24459999986531 3478888775543 55677777
No 475
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.86 E-value=0.18 Score=42.97 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=31.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHH
Q 018692 210 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
+.|+|-|.-|+||||+++.+++ .....+++. ...-.......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v~-~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDVI-MTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCEE-EEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCEE-EeeCCCCChHHHHHHHHHh
Confidence 4688999999999999999987 343344433 2222222334455555554
No 476
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.83 E-value=0.31 Score=54.10 Aligned_cols=89 Identities=12% Similarity=-0.020 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCcccc-CCCCCHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVRV-IIGEDYQLKKSILQ 286 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 286 (352)
.-++|-|+|+.|+||||||.++.. .....=...+|+...+..+..- ++.++.....-. ......++.++.+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 457899999999999999999886 3333345688998888887653 677777655411 12223366666666
Q ss_pred HHcCC-ceEEEEEeCCCC
Q 018692 287 DYLTN-KKYFIVLDDVFD 303 (352)
Q Consensus 287 ~~L~~-kr~LlVLDdvw~ 303 (352)
..++. .--++|+|-|-.
T Consensus 1503 ~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHcCCCCEEEEccHHh
Confidence 66654 455999999843
No 477
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.78 E-value=0.11 Score=49.31 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcc
Q 018692 212 VAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 212 i~IvG~gGvGKTtLA~~v~~~ 232 (352)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999864
No 478
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.74 E-value=0.062 Score=55.60 Aligned_cols=46 Identities=24% Similarity=0.204 Sum_probs=36.7
Q ss_pred CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 186 LDISEFENSGEKLFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|.+..++.|.+.+... -.....+.++|.+|+||||||+.+++
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 77889999998888877531 01345577999999999999999998
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.72 E-value=0.17 Score=43.75 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccCCccc--ccceEEEEEeCCCCCHHHHHHHHHH
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNNHVKF--YFDCLAWVRVSMLHDFGKILDDIIK 262 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~il~~i~~ 262 (352)
....|.|.|..|+||||+++.+.+ .... .+++..-..-.......+.+++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~--~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE--YLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 467899999999999999999987 3332 2344331222222233455566655
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.71 E-value=0.13 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
-.+++|+|..|+|||||++.++.-
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.71 E-value=0.12 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||++.++.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 482
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.71 E-value=0.21 Score=44.45 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999864
No 483
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.65 E-value=0.14 Score=42.80 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=18.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++.|+|..|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4778999999999999965554
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.61 E-value=0.13 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
-.+++|+|..|+|||||.+.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 485
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.59 E-value=0.27 Score=43.83 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 196 EKLFDLLIEG----PSGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 196 ~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
+++.+.|..- ......|+|+|.+|+|||||...+....
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4455555431 2346689999999999999999998754
No 486
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.50 E-value=0.13 Score=49.14 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcc
Q 018692 198 LFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 198 l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+++.+ -.=..-.+++|+|..|+|||||.+.+...
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45555 32223468999999999999999999874
No 487
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.50 E-value=0.17 Score=43.64 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=19.9
Q ss_pred CceEEEEEc-CCCccHHHHHHHHHc
Q 018692 208 GLSVVAILD-SSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG-~gGvGKTtLA~~v~~ 231 (352)
..++|+|++ -||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 467888885 599999999988765
No 488
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.48 E-value=0.15 Score=43.51 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcc
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.45 E-value=0.14 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 018692 210 SVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999874
No 490
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.44 E-value=0.23 Score=47.43 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=32.5
Q ss_pred ccccccHHHHHHHHhcC---------CCCceEEEEEcCCCccHHHHHHHHHccC
Q 018692 189 SEFENSGEKLFDLLIEG---------PSGLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 189 vGr~~~~~~l~~~L~~~---------~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.|.++-.+.|.+.+... ......++|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 35566667776666421 1234678999999999999999998753
No 491
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.41 E-value=0.89 Score=46.69 Aligned_cols=107 Identities=7% Similarity=0.013 Sum_probs=53.1
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCCHHHHHHHHHHhcCCCCccc-
Q 018692 193 NSGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHDFGKILDDIIKSVMPPARVR- 271 (352)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i~~~l~~~~~~~- 271 (352)
...+.|...+..+ .++.|+|..|+||||+...+.-.......-...+.+......-...+.+.+...++......
T Consensus 97 ~q~~~i~~~l~~~----~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~v 172 (773)
T 2xau_A 97 AQRDEFLKLYQNN----QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEV 172 (773)
T ss_dssp GGHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTE
T ss_pred HHHHHHHHHHhCC----CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhee
Confidence 4556666666553 47889999999999965554321111111123344433332222344444544443322110
Q ss_pred --------------cCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCC
Q 018692 272 --------------VIIGEDYQLKKSILQD-YLTNKKYFIVLDDVFD 303 (352)
Q Consensus 272 --------------~~~~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~ 303 (352)
.....+...+...+.. .+-.+--+||||.+-.
T Consensus 173 G~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 173 GYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred cceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 0011234445444333 2234556899999963
No 492
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.41 E-value=0.59 Score=48.94 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCccHHHHHHHH
Q 018692 209 LSVVAILDSSGFDKTAFAADT 229 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v 229 (352)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999998
No 493
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.37 E-value=0.16 Score=50.29 Aligned_cols=24 Identities=13% Similarity=-0.115 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
+..+|.|.|++|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999977
No 494
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.34 E-value=0.15 Score=50.24 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.-.+++|+|..|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999999886
No 495
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.30 E-value=0.16 Score=44.45 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHccC
Q 018692 209 LSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 209 ~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
.--|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567899999999999999988643
No 496
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.25 E-value=0.16 Score=44.86 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998764
No 497
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.25 E-value=0.16 Score=44.69 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=27.5
Q ss_pred CCceEEEEE-cCCCccHHHHHHHHHccCCcccccceEEEEEeCCCCC
Q 018692 207 SGLSVVAIL-DSSGFDKTAFAADTYNNNHVKFYFDCLAWVRVSMLHD 252 (352)
Q Consensus 207 ~~~~vi~Iv-G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (352)
...++|+|+ |-||+||||+|..+..--. ++ ..+.-|......+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~ 68 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KN--NKVLLIDMDTQAS 68 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCC
Confidence 357889886 4699999999998876322 22 2345555554433
No 498
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.20 E-value=0.15 Score=46.06 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.0
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 018692 194 SGEKLFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 231 (352)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 231 (352)
.++++.+++.. .+++|+|..|+|||||.+.+..
T Consensus 159 gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence 36677777643 4789999999999999999986
No 499
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.17 E-value=0.15 Score=47.54 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHccC
Q 018692 208 GLSVVAILDSSGFDKTAFAADTYNNN 233 (352)
Q Consensus 208 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 233 (352)
+.++++|+|.+|+|||||.+.+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46789999999999999999998743
No 500
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.11 E-value=0.14 Score=45.56 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcc
Q 018692 210 SVVAILDSSGFDKTAFAADTYNN 232 (352)
Q Consensus 210 ~vi~IvG~gGvGKTtLA~~v~~~ 232 (352)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999987653
Done!