BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018694
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 144/292 (49%), Gaps = 2/292 (0%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G+ G+ +LL AGY++ V +R ++ GA A + ++A Q DV+
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPV 170
+ + V+ V L +G + G +PG +++D ++ K +DAPV
Sbjct: 67 TXLPNSPHVKEVALG-ENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPV 125
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAKLANQITIATT 229
SGG+ A GTL++ GGD+++ K L A G V + G G G KLANQ+ +A
Sbjct: 126 SGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALN 185
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
+ E + A KAG+N +L AI G AGS LD + R+F+PGF ++ +KDL
Sbjct: 186 IAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDL 245
Query: 290 GICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERLNNVRL 341
L + +L+A G GN AL E+L V +
Sbjct: 246 ANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSALACYYEKLAKVEV 297
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 5/293 (1%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVV 109
++G+IG G+ G +L AG+ + V T+ A LL +GA ++ + +D++
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHV--TTIGPVADELLSLGAVNVETARQVTEFADII 62
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
F V V VL A + L+ G IVD ++ +DAP
Sbjct: 63 FIXVPDTPQVEDVLFGEHGCAKTSLQ-GKTIVDXSSISPIETKRFAQRVNEXGADYLDAP 121
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT 228
VSGG+ GA+ GTL+I GG++ V ++ PLF ++GK + +GG+G GQ K+ANQI +A
Sbjct: 122 VSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVAL 181
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
+ + E +V+A KAG + A+ G A S+ L++HG R + R FEPGF + KD
Sbjct: 182 NIEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGFKIALHQKD 241
Query: 289 LGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALILALERLNNVRL 341
L + L+ + + + A+G L A + ALE N +L
Sbjct: 242 LNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQALELXANHKL 294
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 2/250 (0%)
Query: 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS 104
+ PT+ +IG++G G+MG + ++LL G+TVTV+NRT K + GA L +P + S
Sbjct: 26 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVS 85
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCS 164
D+ F+ V P + ++L P SG L G+RPG VDM+T +
Sbjct: 86 TCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR 144
Query: 165 AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLANQ 223
++APVSG + + G L I A GD + + + F MGK + ++G G L
Sbjct: 145 FLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVN 204
Query: 224 ITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283
+ + M + EG+ A G + + L+ ++ G S LD IL+ +F+P F++
Sbjct: 205 MVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLK 264
Query: 284 HFVKDLGICL 293
+ KDL + +
Sbjct: 265 YIQKDLRLAI 274
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 119/242 (49%), Gaps = 2/242 (0%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDV 108
+ + G+IG G+MG +M +L+ AG +VT++NR+ KA+ L +GA A +P + V
Sbjct: 1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPV 60
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDA 168
F+++ P+ V G L G+ G VDM+T K ++A
Sbjct: 61 TFAMLADPAAAEEVCFG-KHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEA 119
Query: 169 PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLANQITIA 227
PVSG + A+ GTL I A GD ++ + P F MG K+ ++G GKG KL + +
Sbjct: 120 PVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMG 179
Query: 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287
M EG+ KAGL + L+ I GA + L G I R+F P F + H K
Sbjct: 180 GMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQK 239
Query: 288 DL 289
DL
Sbjct: 240 DL 241
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 2/246 (0%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVV 109
T G++G G+MG M A+L+ AG+ VTV+NR +K PL+ +GA A SP + + D+
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDIT 61
Query: 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
+++ P+ R V ++G L G+ G +DM+T + ++AP
Sbjct: 62 IAMLADPAAAREVCFG-ANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAP 120
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLANQITIAT 228
VSG + A+ GTL I A GD+S+ P FA +G K ++G G+G KL + +
Sbjct: 121 VSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQ 180
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288
M L EGM GL+ L + GA + G +L +F F + H KD
Sbjct: 181 MMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKD 240
Query: 289 LGICLK 294
L + ++
Sbjct: 241 LRLAVE 246
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 2/253 (0%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS 106
P +I ++GTG G L AGY + V+NRT ++A L +GA + + + A +
Sbjct: 29 PYARKITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDA 88
Query: 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAI 166
D+V S + + V+ VL + G + +PG + +D + + +
Sbjct: 89 DIVVSXLENGAVVQDVLF--AQGVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHL 146
Query: 167 DAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITI 226
D PVSGG GA+ GTL I AGG + ++ PL + G+ ++G G GQ KLANQ +
Sbjct: 147 DTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRATHVGPHGSGQLTKLANQXIV 206
Query: 227 ATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286
T+ + E +++A K G + AI+ G A S+ L LHG R ++RDF P ++ +
Sbjct: 207 GITIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLSIQL 266
Query: 287 KDLGICLKECQNM 299
KD L Q +
Sbjct: 267 KDXRNALATAQEI 279
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 3/248 (1%)
Query: 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDV 108
+ +IG+IG G MG+ M +LL G TV F+ + ++ GA ++ +A+ SD+
Sbjct: 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDI 63
Query: 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDA 168
+F+ + V V+ P G LS + G +IVDM++ K +DA
Sbjct: 64 IFTSLPNAGIVETVMNGPG-GVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA 122
Query: 169 PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIA 227
PVSGG +GA+ GTL I G E+V +K+ P+ +++GK + ++G +G G K+ N + +
Sbjct: 123 PVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLG 182
Query: 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSR-ILKRDFEPGFFVNHFV 286
M L E +V K GL E I + S +++ + I+ DF GF ++
Sbjct: 183 CNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQH 242
Query: 287 KDLGICLK 294
KDLG+ L+
Sbjct: 243 KDLGLALE 250
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 2/244 (0%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+G++G G+MG++M +LL G+ VTV+NRTLSK L++ GA + +SP + +
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPV 170
+++ P V+ G L + G +DM+T K ++ PV
Sbjct: 83 AMLSDPCAALSVVFD-KGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLANQITIATT 229
SG + A+ G L I A GD+++ ++ P F ++GK + Y+G G G KL + + +
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 201
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289
M EG+V A K+GL+ + L+ + GA + G + K + P F + H KD+
Sbjct: 202 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261
Query: 290 GICL 293
+ L
Sbjct: 262 RLAL 265
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 114/247 (46%), Gaps = 13/247 (5%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLASQSDVV 109
++ +IG G MG M HL + V+NRT KA + + G+ P +++ V+
Sbjct: 3 KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKALRHQEEFGSEAV--PLERVAEARVI 59
Query: 110 FSIVGYPSDVRHVL--LHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAID 167
F+ + +V V L+P LR G VD T+ K + +D
Sbjct: 60 FTCLPTTREVYEVAEALYPY------LREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113
Query: 168 APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIA 227
APVSGG GA+ GTL + GG E V+++ P A KV ++G G G K N +A
Sbjct: 114 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLA 173
Query: 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD-LHGSRILKRDFEPGFFVNHFV 286
+ EG++ K G++ E L I+ + S + + L R+L R F F + V
Sbjct: 174 VNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLV 233
Query: 287 KDLGICL 293
KDLGI +
Sbjct: 234 KDLGIAM 240
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 13/246 (5%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLASQSDVV 109
++ +IG G G HL + V+NRT KA + + G+ P +++ V+
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKALRHQEEFGSEAV--PLERVAEARVI 59
Query: 110 FSIVGYPSDVRHVL--LHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAID 167
F+ + +V V L+P LR G VD T+ K + +D
Sbjct: 60 FTCLPTTREVYEVAEALYPY------LREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113
Query: 168 APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIA 227
APVSGG GA+ GTL + GG E V+++ P A KV ++G G G K N +A
Sbjct: 114 APVSGGTSGAEAGTLTVXLGGPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLA 173
Query: 228 TTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD-LHGSRILKRDFEPGFFVNHFV 286
+ EG++ K G++ E L I+ + S + + L R+L R F F + V
Sbjct: 174 VNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLV 233
Query: 287 KDLGIC 292
KDLGI
Sbjct: 234 KDLGIA 239
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 111/249 (44%), Gaps = 11/249 (4%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
+G+IG G MG M +L+ GY + +++ + D G + SP +A ++D + +
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 112 IVGYPSDVRHVLLHP-SSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPV 170
++ P+ + + + ++G L ++ G +++D +T +DAPV
Sbjct: 63 ML--PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLANQITIATT 229
SGG A++G L GG E L MG V Y G G GQ AK+ N + +A +
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRD-------FEPGFFV 282
M+G E M + GL+ +L ++ + S D + D ++ GF
Sbjct: 181 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240
Query: 283 NHFVKDLGI 291
KDLG+
Sbjct: 241 TLMAKDLGL 249
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 111/249 (44%), Gaps = 11/249 (4%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
+G+IG G MG M +L+ GY + +++ + D G + SP +A ++D + +
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 112 IVGYPSDVRHVLLHP-SSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPV 170
++ P+ + + + ++G L ++ G +++D +T +DAPV
Sbjct: 85 ML--PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 142
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLANQITIATT 229
SGG A++G L GG E L MG V Y G G GQ AK+ N + +A +
Sbjct: 143 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 202
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRD-------FEPGFFV 282
M+G E M + GL+ +L ++ + S D + D ++ GF
Sbjct: 203 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 262
Query: 283 NHFVKDLGI 291
KDLG+
Sbjct: 263 TLMAKDLGL 271
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 109/249 (43%), Gaps = 9/249 (3%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+I +IG G G +LL AGY + VF+ S L+ GA A S +DVV
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPV 170
S + V + L G L+ + PG ++++ +T + + +DAPV
Sbjct: 65 SXLPASQHVEGLYLD-DDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPV 123
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229
SGG GA GTL GGD ++K PLF G+ + + G G GQ AK+ N +A
Sbjct: 124 SGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVL 183
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG-------SRILKRDFEPGFFV 282
+G E GL ++ + G+ +L+++ + RD+ GF
Sbjct: 184 XIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGFXA 243
Query: 283 NHFVKDLGI 291
KDLG+
Sbjct: 244 QLXAKDLGL 252
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 109/249 (43%), Gaps = 9/249 (3%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+I +IG G G +LL AGY + VF+ S L+ GA A S +DVV
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPV 170
S + V + L G L+ + PG ++++ +T + + +DAPV
Sbjct: 64 SXLPASQHVEGLYLD-DDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPV 122
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229
SGG GA GTL GGD ++K PLF G+ + + G G GQ AK+ N +A
Sbjct: 123 SGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVL 182
Query: 230 MVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG-------SRILKRDFEPGFFV 282
+G E GL ++ + G+ +L+++ + RD+ GF
Sbjct: 183 XIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGFXA 242
Query: 283 NHFVKDLGI 291
KDLG+
Sbjct: 243 QLXAKDLGL 251
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 109/253 (43%), Gaps = 19/253 (7%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G+IG G MG M + VTV++ + PL + GA LADS +A+ +
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 111 SIVGYPSDVRHVLLHPSSGALSG-LRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAP 169
+++ + VR V+ G L+G +PG +I +T ++ +DAP
Sbjct: 77 TVLD-DAQVREVV-----GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAP 130
Query: 170 VSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA-LMGKVNYMGGSGKGQFAKLANQITIAT 228
VSGG A G LA G D V +++ P F V + G G G KLA + T
Sbjct: 131 VSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFT 190
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAIS-----TGAAGSKSLDLHGSRILKRDFEP-GFFV 282
+ E M A AGL+++ + TG G+ + R +D EP F
Sbjct: 191 SYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMV-----RDNMKDLEPDNFLY 245
Query: 283 NHFVKDLGICLKE 295
F+ G+ K+
Sbjct: 246 QPFLHTRGLGEKD 258
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 111/284 (39%), Gaps = 6/284 (2%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
+I ++G G +G + LL AGY + V+NRT SKA+PL +GA + ++ + +VF
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPV 170
S++ + V + S + L G+ V +T + AP+
Sbjct: 67 SVLADDAAVEELF---SXELVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPI 123
Query: 171 SGGDRGAKTGTLAIFAGGDESVVQKLNPLFA--LMGKVNYMGGSGKGQFAKLANQITIAT 228
+ I G+ +++ P+ + G ++ G KLA IA
Sbjct: 124 FARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIAC 183
Query: 229 TMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEP-GFFVNHFVK 287
++ E A K G++ + +++ + +G + +EP F +K
Sbjct: 184 SLEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLK 243
Query: 288 DLGICLKECQNMXXXXXXXXXXXXXXXSLKAHGEGNLGTQALIL 331
D+ + L+ ++ S A G NL AL L
Sbjct: 244 DINLTLQTASDVNAPXPFADIIRNRFISGLAKGRENLDWGALAL 287
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 24/190 (12%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
+ +IG +G VMGR++ ++ + GYTV++FNR+ K + + +A++P
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEV------IAENPGKKLVPYY 67
Query: 108 VVFSIVGYPSDVRHVLLHPSSG-----ALSGLRP----GGIIVDMTTXXXXXXXXXXXXX 158
V V R +LL +G A+ L+P G II+D
Sbjct: 68 TVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNREL 127
Query: 159 XXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK--------VNYMG 210
+ + I VSGG+ GA G +I GG + + + P+ + V Y+G
Sbjct: 128 SAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG 186
Query: 211 GSGKGQFAKL 220
G G + K+
Sbjct: 187 ADGAGHYVKM 196
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 24/190 (12%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
+ +IG +G VMGR++ ++ + GYTV++FNR+ K + + +A++P
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEV------IAENPGKKLVPYY 67
Query: 108 VVFSIVGYPSDVRHVLLHPSSG-----ALSGLRP----GGIIVDMTTXXXXXXXXXXXXX 158
V V R +LL +G A+ L+P G II+D
Sbjct: 68 TVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNREL 127
Query: 159 XXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK--------VNYMG 210
+ + I VSGG+ GA G +I GG + + + P+ + V Y+G
Sbjct: 128 SAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG 186
Query: 211 GSGKGQFAKL 220
G G + K+
Sbjct: 187 ADGAGHYVKM 196
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 32/259 (12%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSD 107
+ +IG +G VMGR++ ++ + GYTV+VFNR+ K + + +A++P
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEV------IAENPGKKLVPYY 67
Query: 108 VVFSIVGYPSDVRHVLLHPSSG-----ALSGLRP----GGIIVDMTTXXXXXXXXXXXXX 158
V V R +LL +G A+ L+P G II+D
Sbjct: 68 TVQEFVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNREL 127
Query: 159 XXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK--------VNYMG 210
+ + I VSGG+ G G +I GG + + + P+ + V Y+G
Sbjct: 128 SAEGFNFIGTGVSGGEEGTLKGP-SIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIG 186
Query: 211 GSGKGQFAKLANQITIATTMVGLVEGMVYA-HKAGL---NVEL--FLNAISTGAAGSKSL 264
G G + K+ + M + E YA K GL N EL + G S +
Sbjct: 187 ADGAGHYVKMVHNGIEYGDMQLIAEA--YALLKGGLALSNEELAQTFTEWNEGELSSYLI 244
Query: 265 DLHGSRILKRDFEPGFFVN 283
D+ K+D E + V+
Sbjct: 245 DITKDIFTKKDEEGKYLVD 263
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 96 ADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXX 155
A S A D + +V + VR VL G +PG + +T
Sbjct: 55 AASAREFAGVVDALVILVVNAAQVRQVLFG-EDGVAHLXKPGSAVXVSSTISSADAQEIA 113
Query: 156 XXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGS-G 213
N + +DAPVSGG A G + A G E+ +L P+ A+ V + + G
Sbjct: 114 AALTALNLNXLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASNVYRISDTPG 173
Query: 214 KGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILK 273
G K+ +Q+ + E A +AG+ +++ + ++ A S + ++
Sbjct: 174 AGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFENRXQHVVD 233
Query: 274 RDFEPGFFVNHFVKDLGI 291
D+ P V+ FVKDLG+
Sbjct: 234 GDYTPRSAVDIFVKDLGL 251
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-------IGAH-LADSPHSL 102
+IG IG VMG+++ ++ + GY+V V+NR K L +G + + + ++L
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFVNAL 65
Query: 103 ASQSDVVFSI-VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXK 161
++ + G P+D L P L G I++D
Sbjct: 66 EKPRKILLMVKAGAPTDATIEQLKPH------LEKGDIVIDGGNTYFKDTQRRNKELAEL 119
Query: 162 NCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVN------YMGGSGK 214
I VSGG+ GA G +I GG + + + P+F A+ KV+ Y+G G
Sbjct: 120 GIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGA 178
Query: 215 GQFAKLAN 222
G + K+ +
Sbjct: 179 GHYVKMVH 186
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-------IGAH-LADSPHSL 102
+IG IG VMG+++ ++ + GY+V V+NR K L +G + + + ++L
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFVNAL 66
Query: 103 ASQSDVVFSI-VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXK 161
++ + G P+D L P L G I++D
Sbjct: 67 EKPRKILLMVKAGAPTDATIEQLKPH------LEKGDIVIDGGNTYFKDTQRRNKELAEL 120
Query: 162 NCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVN------YMGGSGK 214
I VSGG+ GA G +I GG + + + P+F A+ KV+ Y+G G
Sbjct: 121 GIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGA 179
Query: 215 GQFAKLAN 222
G + K+ +
Sbjct: 180 GHYVKMVH 187
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 35/194 (18%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
G +G VMG+++ ++ + GYTV ++NRT SK + + H ++VF+
Sbjct: 8 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF--------KEH---QDKNLVFT 56
Query: 112 -----IVGYPSDVRHVLLHPSSGA-----LSGLRP----GGIIVDMTTXXXXXXXXXXXX 157
VG R ++L +GA + L P G I++D
Sbjct: 57 KTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAE 116
Query: 158 XXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM-------GK--VNY 208
+ I VSGG++GA G ++ GG + + P+F + GK V Y
Sbjct: 117 LADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAY 175
Query: 209 MGGSGKGQFAKLAN 222
MG +G G + K+ +
Sbjct: 176 MGANGAGHYVKMVH 189
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
G +G VMG+++ ++ + GYTV ++NRT SK + + H ++VF+
Sbjct: 6 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF--------KEH---QDKNLVFT 54
Query: 112 -----IVGYPSDVRHVLLHPSSGA-----LSGLRP----GGIIVDMTTXXXXXXXXXXXX 157
VG R ++L +GA + L P G I++D
Sbjct: 55 KTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAE 114
Query: 158 XXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM-------GK--VNY 208
+ I VSGG++GA G ++ GG + + P+F + GK V Y
Sbjct: 115 LADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAY 173
Query: 209 MGGSGKGQFAKL 220
MG +G G + K+
Sbjct: 174 MGANGAGHYVKM 185
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFS 111
G +G VMG+++ ++ + GYTV ++NRT SK + + H ++VF+
Sbjct: 7 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF--------KEH---QDKNLVFT 55
Query: 112 -----IVGYPSDVRHVLLHPSSGA-----LSGLRP----GGIIVDMTTXXXXXXXXXXXX 157
VG R ++L +GA + L P G I++D
Sbjct: 56 KTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAE 115
Query: 158 XXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM-------GK--VNY 208
+ I VSGG++GA G ++ GG + + P+F + GK V Y
Sbjct: 116 LADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAY 174
Query: 209 MGGSGKGQFAKL 220
MG +G G + K+
Sbjct: 175 MGANGAGHYVKM 186
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 46 CPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNR-TLSKAQPLLDIGAHLADSPHSLAS 104
P RIG +G G +GR++ + G +V +NR TLS +D AH SP LA
Sbjct: 168 SPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSG----VDWIAH--QSPVDLAR 221
Query: 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDM 143
SDV+ V + ++++ + L L P GI+V++
Sbjct: 222 DSDVLAVCVAASAATQNIV---DASLLQALGPEGIVVNV 257
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 74 TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSG 133
+V V + L++ + D G + D ++ ++ +I GY DVR V+ HP++ ALS
Sbjct: 554 SVPVMEKKLAELKKDFD-GIEVEDE-ENVKEYHEIEQAIKGYREDVRQVVTHPAN-ALSF 610
Query: 134 LRPGGII 140
L+PG ++
Sbjct: 611 LQPGRLV 617
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQS-DVVF 110
I IG VMG+++ ++ + G+ V FNRT+SK L A+ A L + S + +
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL---ANEAKGTKVLGAHSLEEMV 61
Query: 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAID--- 167
S + P R +LL + A+ + + + C +
Sbjct: 62 SKLKKPR--RIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG 119
Query: 168 -----APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKV-------NYMGGSGK 214
+ VSGG+ GA+ G ++ GG++ + +F + KV +++G G
Sbjct: 120 ILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGA 178
Query: 215 GQFAKLAN 222
G F K+ +
Sbjct: 179 GHFVKMVH 186
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
Query: 63 SMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSI-VGYPSDVRH 121
++ ++ G+ V VFNRT SK++ + A + + A ++ F+ + P R
Sbjct: 15 NLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKP---RK 71
Query: 122 VLLHPSSGALSG---------LRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSG 172
L+ +GA + G I+VD + +SG
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131
Query: 173 GDRGAKTGTLAIFAGGDESVVQKLNPL 199
G+ GA+ G A F GG SV +++ P+
Sbjct: 132 GEEGARKGP-AFFPGGTLSVWEEIRPI 157
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA-HLADSPHSLASQSDV 108
T++G G G +G + + G V+VF R K Q L +G H P + D
Sbjct: 178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDF 237
Query: 109 VFSIVGYPSDVR---HVLLHPSSGALSGLRP 136
+ S + D++ +L + AL GL P
Sbjct: 238 IISTIPTHYDLKDYLKLLTYNGDLALVGLPP 268
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89
I IG VMG+++ ++ + G+ V FNRT+SK L
Sbjct: 28 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL 65
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89
I IG VMG+++ ++ + G+ V FNRT+SK L
Sbjct: 7 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL 44
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 74 TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSG 133
+V V + L++ + D G + D ++ ++ +I GY DVR V+ HP++ ALS
Sbjct: 652 SVPVMEKKLAELKKDFD-GIEVEDE-ENVKEYHEIEQAIKGYREDVRQVVTHPAN-ALSF 708
Query: 134 LRPGGII 140
L+PG ++
Sbjct: 709 LQPGRLV 715
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89
G IG VMG+++ + + G+TV +NRT SK L
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFL 50
>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|B Chain B, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|C Chain C, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|D Chain D, Shikimate Dehydrogenase Aroe Complexed With Nadp+
Length = 271
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH 94
RI IG G R + LL+ VT+ NRT+S+A+ L + AH
Sbjct: 121 RILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH 164
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 45 VCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSP---HS 101
+ PT RI +G + G + L +AG V V+ R+ QPL G + P H
Sbjct: 1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS---PQPLSGFGTGIVVQPELVHY 57
Query: 102 LASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDM 143
L Q + SI S + +V AL+G R G + D
Sbjct: 58 LLEQGVELDSISVPSSSMEYV------DALTGERVGSVPADW 93
>pdb|3DTT|A Chain A, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
pdb|3DTT|B Chain B, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
Length = 245
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNR----TLSKAQP 87
+I +GTG +GR+ L + G+ VT+ R TL++A+P
Sbjct: 21 KIAVLGTGTVGRTXAGALADLGHEVTIGTRDPKATLARAEP 61
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 233 LVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG 268
L G+VY+ + N+E+ A S A G LHG
Sbjct: 366 LASGLVYSLPSDANIEISFPATSAAAGGPHPFHLHG 401
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
Length = 215
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVF 110
++G +G+G RS+ L+ +G+ V V +R + L A + +++S +V+F
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSS-PEVIF 88
Query: 111 SIV 113
V
Sbjct: 89 VAV 91
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ 105
P +G +G G + + + ++ G + ++ + A+ +GA DS LA +
Sbjct: 161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARR 220
Query: 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVD 142
SD V V Y H++ + ++PG IV+
Sbjct: 221 SDCVSVSVPYMKLTHHLI---DEAFFAAMKPGSRIVN 254
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT-LSKAQPLLDIGAHLADSPHSLASQS 106
T R+G G G +GR++ G + NRT LS A L+ GA D+ SL S
Sbjct: 172 TGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHA---LEEGAIYHDTLDSLLGAS 228
Query: 107 DVVF 110
D+
Sbjct: 229 DIFL 232
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 37 ATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFN 79
AT S P+ P +G +G G +GR C + GY V V +
Sbjct: 24 ATPDSVSPILP-GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLD 65
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 47 PTNTRIGWIGTGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ 105
P +G +G G + + + ++ G + ++ + A+ +GA DS LA +
Sbjct: 161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARR 220
Query: 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVD 142
SD V V Y H++ + ++PG IV+
Sbjct: 221 SDCVSVSVPYMKLTHHLI---DEAFFAAMKPGSRIVN 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,444,129
Number of Sequences: 62578
Number of extensions: 310112
Number of successful extensions: 857
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 51
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)