Query 018694
Match_columns 351
No_of_seqs 178 out of 2265
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 2.8E-51 6E-56 367.0 33.2 284 50-334 1-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 7.4E-50 1.6E-54 350.4 32.1 293 46-339 32-326 (327)
3 PRK15059 tartronate semialdehy 100.0 1.4E-45 3E-50 338.3 35.4 289 50-340 1-290 (292)
4 PRK15461 NADH-dependent gamma- 100.0 3.7E-45 8E-50 336.9 35.0 290 49-339 1-292 (296)
5 PRK11559 garR tartronate semia 100.0 4.7E-43 1E-47 323.8 35.1 294 48-342 1-295 (296)
6 TIGR01505 tartro_sem_red 2-hyd 100.0 3.3E-42 7.2E-47 317.3 34.6 290 51-341 1-291 (291)
7 TIGR01692 HIBADH 3-hydroxyisob 100.0 4.2E-42 9.1E-47 315.8 31.8 279 54-333 1-287 (288)
8 PLN02858 fructose-bisphosphate 100.0 1E-41 2.2E-46 363.6 34.3 295 50-345 5-303 (1378)
9 PLN02858 fructose-bisphosphate 100.0 2.8E-40 6.1E-45 352.6 34.8 297 48-345 323-623 (1378)
10 PLN02350 phosphogluconate dehy 100.0 2.4E-38 5.2E-43 305.6 29.4 266 47-317 4-298 (493)
11 PRK12490 6-phosphogluconate de 100.0 5E-38 1.1E-42 290.0 27.8 278 50-334 1-292 (299)
12 PRK09599 6-phosphogluconate de 100.0 9.2E-36 2E-40 275.3 27.7 277 50-334 1-293 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 3.5E-33 7.6E-38 257.5 28.9 280 50-338 1-291 (298)
14 PTZ00142 6-phosphogluconate de 100.0 9.8E-33 2.1E-37 266.5 27.0 257 49-310 1-284 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 9.8E-32 2.1E-36 259.7 25.5 254 51-309 1-279 (467)
16 PRK09287 6-phosphogluconate de 100.0 2.7E-30 5.9E-35 248.6 24.8 244 60-308 1-271 (459)
17 COG1023 Gnd Predicted 6-phosph 100.0 4.6E-30 1E-34 218.1 21.9 280 50-341 1-296 (300)
18 TIGR03026 NDP-sugDHase nucleot 100.0 2.3E-29 5.1E-34 242.3 23.5 253 50-317 1-297 (411)
19 PF03446 NAD_binding_2: NAD bi 100.0 1E-29 2.2E-34 214.2 13.0 159 49-211 1-163 (163)
20 PRK14618 NAD(P)H-dependent gly 100.0 5.6E-28 1.2E-32 226.3 17.8 271 48-334 3-321 (328)
21 PRK00094 gpsA NAD(P)H-dependen 100.0 1.1E-26 2.4E-31 217.3 21.7 272 49-333 1-322 (325)
22 PRK15182 Vi polysaccharide bio 99.9 6.5E-25 1.4E-29 210.7 23.6 253 48-316 5-293 (425)
23 PRK06129 3-hydroxyacyl-CoA deh 99.9 2.3E-24 5E-29 199.9 24.7 267 49-333 2-296 (308)
24 PRK11064 wecC UDP-N-acetyl-D-m 99.9 3.3E-24 7.2E-29 205.9 25.6 250 49-316 3-295 (415)
25 PRK14619 NAD(P)H-dependent gly 99.9 2.5E-24 5.4E-29 199.7 20.1 256 49-334 4-299 (308)
26 PRK15057 UDP-glucose 6-dehydro 99.9 1E-23 2.2E-28 200.3 23.8 244 50-317 1-284 (388)
27 COG0362 Gnd 6-phosphogluconate 99.9 7E-24 1.5E-28 192.5 20.9 259 50-313 4-289 (473)
28 PRK08229 2-dehydropantoate 2-r 99.9 6.7E-24 1.5E-28 199.9 21.7 271 48-334 1-335 (341)
29 PLN02688 pyrroline-5-carboxyla 99.9 4E-23 8.8E-28 187.9 20.2 245 50-320 1-264 (266)
30 COG0240 GpsA Glycerol-3-phosph 99.9 2.7E-23 5.9E-28 188.2 18.6 271 49-334 1-322 (329)
31 COG0345 ProC Pyrroline-5-carbo 99.9 2.2E-22 4.9E-27 179.2 20.8 251 49-320 1-264 (266)
32 PRK07679 pyrroline-5-carboxyla 99.9 2.4E-22 5.1E-27 184.0 19.2 242 50-320 4-269 (279)
33 PRK12491 pyrroline-5-carboxyla 99.9 7.1E-22 1.5E-26 179.4 19.9 250 50-320 3-267 (272)
34 COG1004 Ugd Predicted UDP-gluc 99.9 1.2E-20 2.5E-25 173.3 24.2 255 50-317 1-295 (414)
35 PRK12439 NAD(P)H-dependent gly 99.9 6.4E-21 1.4E-25 179.0 21.1 271 48-334 6-328 (341)
36 KOG2653 6-phosphogluconate deh 99.9 7.8E-21 1.7E-25 170.1 18.1 259 50-314 7-293 (487)
37 PLN02353 probable UDP-glucose 99.9 1.2E-19 2.6E-24 175.9 26.3 250 49-311 1-301 (473)
38 PRK07531 bifunctional 3-hydrox 99.9 3.7E-20 8.1E-25 181.9 23.0 199 48-263 3-226 (495)
39 PRK11880 pyrroline-5-carboxyla 99.9 2.7E-20 5.9E-25 169.4 20.1 252 48-320 1-265 (267)
40 PRK14620 NAD(P)H-dependent gly 99.9 3.6E-20 7.8E-25 173.4 21.1 257 50-313 1-311 (326)
41 PRK12921 2-dehydropantoate 2-r 99.9 1.1E-19 2.5E-24 168.5 22.8 254 50-317 1-301 (305)
42 PRK06249 2-dehydropantoate 2-r 99.9 1.4E-19 3E-24 168.4 22.7 255 47-318 3-310 (313)
43 PRK12557 H(2)-dependent methyl 99.8 1.6E-19 3.5E-24 168.4 21.7 196 50-254 1-236 (342)
44 PRK06522 2-dehydropantoate 2-r 99.8 1.4E-19 3.1E-24 167.7 21.1 255 50-318 1-299 (304)
45 PTZ00345 glycerol-3-phosphate 99.8 3.3E-19 7.2E-24 167.2 21.8 268 49-334 11-354 (365)
46 PRK06928 pyrroline-5-carboxyla 99.8 4.9E-19 1.1E-23 161.7 20.3 240 49-318 1-265 (277)
47 COG0677 WecC UDP-N-acetyl-D-ma 99.8 5.3E-19 1.1E-23 161.8 19.0 206 48-258 8-254 (436)
48 PRK05708 2-dehydropantoate 2-r 99.8 6.6E-19 1.4E-23 163.0 19.7 253 50-319 3-299 (305)
49 COG1893 ApbA Ketopantoate redu 99.8 2E-18 4.2E-23 159.2 21.5 251 50-319 1-302 (307)
50 TIGR03376 glycerol3P_DH glycer 99.8 4.6E-19 9.9E-24 165.2 17.2 251 51-314 1-330 (342)
51 PRK06476 pyrroline-5-carboxyla 99.8 1.5E-18 3.3E-23 157.1 20.1 244 50-317 1-254 (258)
52 PRK07680 late competence prote 99.8 1.9E-18 4.2E-23 157.7 19.4 238 50-310 1-254 (273)
53 PF14833 NAD_binding_11: NAD-b 99.8 2.3E-18 4.9E-23 137.9 14.4 121 213-333 1-122 (122)
54 PTZ00431 pyrroline carboxylate 99.8 1.2E-17 2.5E-22 151.3 19.8 245 50-320 4-260 (260)
55 PRK08507 prephenate dehydrogen 99.8 5.8E-17 1.3E-21 148.1 22.9 190 50-254 1-206 (275)
56 PRK08268 3-hydroxy-acyl-CoA de 99.8 1.6E-17 3.5E-22 163.1 19.2 186 49-259 7-227 (507)
57 PRK09260 3-hydroxybutyryl-CoA 99.8 4.2E-17 9.2E-22 150.0 17.8 186 50-258 2-221 (288)
58 PRK11199 tyrA bifunctional cho 99.8 2.9E-16 6.3E-21 149.1 23.9 184 43-252 92-279 (374)
59 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 8.2E-17 1.8E-21 157.7 17.9 186 49-258 5-224 (503)
60 PRK06130 3-hydroxybutyryl-CoA 99.7 4E-16 8.6E-21 145.2 20.7 192 48-259 3-221 (311)
61 PRK08655 prephenate dehydrogen 99.7 5.7E-16 1.2E-20 149.8 22.3 194 50-253 1-201 (437)
62 PRK07417 arogenate dehydrogena 99.7 7E-17 1.5E-21 147.8 15.1 171 50-229 1-185 (279)
63 PRK07634 pyrroline-5-carboxyla 99.7 2E-16 4.4E-21 142.1 17.5 201 49-260 4-212 (245)
64 PRK07066 3-hydroxybutyryl-CoA 99.7 5.6E-15 1.2E-19 136.5 26.2 193 49-260 7-226 (321)
65 PRK07819 3-hydroxybutyryl-CoA 99.7 6.3E-16 1.4E-20 141.7 18.1 191 48-259 4-227 (286)
66 PRK06545 prephenate dehydrogen 99.7 4.3E-15 9.3E-20 140.7 22.1 196 50-258 1-214 (359)
67 PLN02545 3-hydroxybutyryl-CoA 99.7 2.4E-15 5.2E-20 138.9 17.8 186 49-258 4-223 (295)
68 COG0287 TyrA Prephenate dehydr 99.7 3.1E-14 6.7E-19 129.0 22.9 164 48-217 2-177 (279)
69 PRK06035 3-hydroxyacyl-CoA deh 99.7 5.5E-15 1.2E-19 136.2 18.0 188 49-259 3-226 (291)
70 PLN02256 arogenate dehydrogena 99.7 2.9E-14 6.2E-19 131.4 22.1 163 48-217 35-210 (304)
71 PRK07530 3-hydroxybutyryl-CoA 99.7 1.2E-14 2.6E-19 134.0 19.5 187 49-258 4-223 (292)
72 TIGR01724 hmd_rel H2-forming N 99.7 3.6E-14 7.7E-19 128.0 21.8 152 50-209 1-192 (341)
73 TIGR01915 npdG NADPH-dependent 99.6 1.1E-14 2.4E-19 128.6 17.0 163 50-219 1-197 (219)
74 PRK07502 cyclohexadienyl dehyd 99.6 2.2E-14 4.8E-19 133.2 19.3 168 49-222 6-190 (307)
75 TIGR00745 apbA_panE 2-dehydrop 99.6 1.9E-14 4.1E-19 132.6 18.4 239 59-317 1-291 (293)
76 PRK05808 3-hydroxybutyryl-CoA 99.6 5.3E-14 1.2E-18 129.1 20.7 190 49-258 3-222 (282)
77 PRK08293 3-hydroxybutyryl-CoA 99.6 3.6E-14 7.9E-19 130.4 18.9 193 49-259 3-226 (287)
78 PF01210 NAD_Gly3P_dh_N: NAD-d 99.6 2.7E-15 5.8E-20 125.5 9.8 136 51-191 1-155 (157)
79 TIGR00112 proC pyrroline-5-car 99.6 2.6E-14 5.6E-19 128.2 16.6 225 72-317 9-244 (245)
80 PF03807 F420_oxidored: NADP o 99.6 4.6E-15 1E-19 113.5 6.4 90 51-146 1-96 (96)
81 PRK05479 ketol-acid reductoiso 99.6 2E-13 4.3E-18 125.9 17.8 190 50-251 18-225 (330)
82 COG2085 Predicted dinucleotide 99.6 5.8E-14 1.3E-18 119.6 13.0 161 49-217 1-186 (211)
83 PRK14806 bifunctional cyclohex 99.5 5.4E-13 1.2E-17 138.0 21.8 182 49-236 3-201 (735)
84 KOG3124 Pyrroline-5-carboxylat 99.5 7.5E-13 1.6E-17 115.0 17.5 243 50-320 1-265 (267)
85 TIGR00465 ilvC ketol-acid redu 99.5 1.6E-13 3.5E-18 126.7 14.1 191 50-258 4-218 (314)
86 PLN02712 arogenate dehydrogena 99.5 9.7E-13 2.1E-17 133.1 20.1 158 48-213 368-539 (667)
87 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 1E-13 2.2E-18 118.7 9.9 146 50-199 1-185 (185)
88 PLN02712 arogenate dehydrogena 99.5 2.6E-12 5.7E-17 130.0 20.0 158 48-212 51-221 (667)
89 PF02737 3HCDH_N: 3-hydroxyacy 99.4 7.9E-13 1.7E-17 112.9 11.2 149 51-209 1-177 (180)
90 PRK08269 3-hydroxybutyryl-CoA 99.4 3.1E-12 6.7E-17 118.6 15.4 179 60-259 1-220 (314)
91 PRK08818 prephenate dehydrogen 99.4 1.8E-11 3.9E-16 115.1 19.3 152 50-221 5-165 (370)
92 PF10727 Rossmann-like: Rossma 99.4 3.9E-13 8.5E-18 107.2 5.5 109 49-165 10-122 (127)
93 COG1250 FadB 3-hydroxyacyl-CoA 99.4 2.3E-11 5E-16 110.9 16.9 192 49-259 3-223 (307)
94 PRK11730 fadB multifunctional 99.3 7.8E-11 1.7E-15 120.7 19.2 191 48-258 312-531 (715)
95 TIGR02437 FadB fatty oxidation 99.3 1E-10 2.2E-15 119.7 19.6 192 48-258 312-531 (714)
96 TIGR02440 FadJ fatty oxidation 99.3 2.8E-10 6.1E-15 116.4 22.2 189 48-255 303-520 (699)
97 KOG2711 Glycerol-3-phosphate d 99.3 1E-10 2.3E-15 105.5 15.2 270 49-335 21-366 (372)
98 TIGR02441 fa_ox_alpha_mit fatt 99.3 4.2E-10 9.1E-15 115.5 21.0 187 48-254 334-549 (737)
99 PRK11154 fadJ multifunctional 99.3 2.9E-10 6.4E-15 116.5 18.9 189 48-255 308-525 (708)
100 PRK07574 formate dehydrogenase 99.3 8E-11 1.7E-15 111.5 13.6 112 49-163 192-303 (385)
101 KOG2380 Prephenate dehydrogena 99.2 2.4E-10 5.2E-15 102.9 15.1 152 49-208 52-217 (480)
102 PLN03139 formate dehydrogenase 99.2 5.3E-11 1.1E-15 112.6 11.2 113 48-163 198-310 (386)
103 PF02153 PDH: Prephenate dehyd 99.2 4.7E-10 1E-14 101.4 15.9 153 64-222 1-169 (258)
104 PF02558 ApbA: Ketopantoate re 99.2 4.8E-11 1E-15 99.0 6.7 102 52-160 1-116 (151)
105 PRK13403 ketol-acid reductoiso 99.2 1.3E-09 2.9E-14 99.4 16.5 191 50-250 17-222 (335)
106 PRK12480 D-lactate dehydrogena 99.2 2E-10 4.4E-15 107.2 11.1 108 49-163 146-253 (330)
107 COG4007 Predicted dehydrogenas 99.1 5.6E-09 1.2E-13 90.7 18.1 192 49-248 1-232 (340)
108 PF02826 2-Hacid_dh_C: D-isome 99.1 9.1E-11 2E-15 100.1 7.1 111 49-163 36-146 (178)
109 PRK13243 glyoxylate reductase; 99.1 2.8E-10 6.1E-15 106.5 10.3 109 49-162 150-258 (333)
110 cd01065 NAD_bind_Shikimate_DH 99.1 2.3E-10 5.1E-15 95.2 8.5 112 50-168 20-138 (155)
111 KOG2304 3-hydroxyacyl-CoA dehy 99.1 2.1E-10 4.6E-15 97.7 7.9 188 49-259 11-237 (298)
112 KOG2666 UDP-glucose/GDP-mannos 99.1 1.1E-08 2.5E-13 91.4 18.6 241 49-302 1-290 (481)
113 PRK06436 glycerate dehydrogena 99.1 6E-10 1.3E-14 102.6 9.9 104 49-161 122-226 (303)
114 PRK08605 D-lactate dehydrogena 99.1 6.3E-10 1.4E-14 104.1 10.0 109 49-163 146-255 (332)
115 PRK15469 ghrA bifunctional gly 99.1 8.6E-10 1.9E-14 102.1 10.4 110 49-163 136-245 (312)
116 COG0111 SerA Phosphoglycerate 99.0 1E-09 2.3E-14 101.7 10.4 150 8-161 90-250 (324)
117 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 8E-09 1.7E-13 89.7 14.2 108 49-167 28-137 (200)
118 TIGR01327 PGDH D-3-phosphoglyc 99.0 1.8E-09 4E-14 107.0 11.5 111 49-163 138-248 (525)
119 TIGR00507 aroE shikimate 5-deh 99.0 1.5E-09 3.2E-14 99.0 8.4 141 11-168 89-236 (270)
120 PRK13302 putative L-aspartate 99.0 3.5E-09 7.5E-14 96.3 10.4 109 49-165 6-119 (271)
121 PRK13581 D-3-phosphoglycerate 99.0 4.1E-09 8.9E-14 104.6 11.6 109 49-162 140-248 (526)
122 PRK00257 erythronate-4-phospha 99.0 4.3E-09 9.3E-14 99.6 10.9 112 49-168 116-233 (381)
123 PF07991 IlvN: Acetohydroxy ac 98.9 2.9E-09 6.3E-14 87.3 8.0 88 50-142 5-93 (165)
124 PRK13304 L-aspartate dehydroge 98.9 4.9E-09 1.1E-13 95.1 10.4 108 49-164 1-115 (265)
125 PLN02928 oxidoreductase family 98.9 9.9E-09 2.1E-13 96.6 12.5 111 49-163 159-281 (347)
126 PRK08410 2-hydroxyacid dehydro 98.9 1.2E-08 2.7E-13 94.6 11.6 113 48-168 144-257 (311)
127 PRK15438 erythronate-4-phospha 98.9 9.8E-09 2.1E-13 96.9 10.9 112 49-168 116-233 (378)
128 PRK06141 ornithine cyclodeamin 98.9 2.5E-09 5.5E-14 99.4 6.3 134 12-168 100-242 (314)
129 PRK06444 prephenate dehydrogen 98.9 4.6E-07 9.9E-12 78.1 19.8 122 50-218 1-128 (197)
130 COG1052 LdhA Lactate dehydroge 98.9 8.3E-09 1.8E-13 95.7 9.6 108 49-161 146-253 (324)
131 KOG2305 3-hydroxyacyl-CoA dehy 98.9 1.3E-08 2.8E-13 87.0 9.9 196 50-261 4-228 (313)
132 PRK15409 bifunctional glyoxyla 98.9 3.2E-08 6.8E-13 92.2 13.1 110 49-163 145-255 (323)
133 PRK11790 D-3-phosphoglycerate 98.8 1.7E-08 3.8E-13 97.0 10.8 108 49-163 151-258 (409)
134 PRK12549 shikimate 5-dehydroge 98.8 9E-09 2E-13 94.2 8.4 142 10-168 98-249 (284)
135 TIGR02853 spore_dpaA dipicolin 98.8 2.5E-08 5.4E-13 91.4 10.2 113 50-173 152-266 (287)
136 PRK06487 glycerate dehydrogena 98.8 4.8E-08 1E-12 90.9 11.9 105 49-163 148-252 (317)
137 PRK00258 aroE shikimate 5-dehy 98.8 1.8E-08 4E-13 92.1 8.6 143 11-168 94-243 (278)
138 PRK06932 glycerate dehydrogena 98.8 2.9E-08 6.3E-13 92.2 8.9 106 49-163 147-252 (314)
139 KOG0069 Glyoxylate/hydroxypyru 98.7 5.5E-08 1.2E-12 89.5 9.9 109 48-160 161-269 (336)
140 PRK09310 aroDE bifunctional 3- 98.7 5.6E-08 1.2E-12 95.3 9.9 132 11-168 304-438 (477)
141 PLN02306 hydroxypyruvate reduc 98.7 7E-08 1.5E-12 91.8 10.1 111 49-162 165-290 (386)
142 PF01408 GFO_IDH_MocA: Oxidore 98.7 1.8E-07 3.8E-12 74.2 9.9 108 50-165 1-116 (120)
143 PRK08306 dipicolinate synthase 98.6 1.7E-07 3.8E-12 86.3 10.0 111 50-171 153-265 (296)
144 PRK05225 ketol-acid reductoiso 98.6 2E-06 4.3E-11 81.9 17.0 197 49-256 36-255 (487)
145 PF01113 DapB_N: Dihydrodipico 98.6 2.9E-07 6.2E-12 73.7 9.8 113 50-171 1-124 (124)
146 TIGR02371 ala_DH_arch alanine 98.6 1.2E-07 2.6E-12 88.5 7.8 116 12-149 103-227 (325)
147 TIGR01809 Shik-DH-AROM shikima 98.6 4.6E-07 9.9E-12 83.0 11.3 147 12-168 96-253 (282)
148 COG1748 LYS9 Saccharopine dehy 98.6 1.9E-07 4.1E-12 88.0 8.9 109 49-166 1-120 (389)
149 COG1712 Predicted dinucleotide 98.5 8E-07 1.7E-11 76.3 10.4 104 50-159 1-109 (255)
150 PRK14194 bifunctional 5,10-met 98.5 4.1E-07 9E-12 82.9 8.3 74 49-146 159-233 (301)
151 PRK12548 shikimate 5-dehydroge 98.5 5.9E-07 1.3E-11 82.6 9.1 142 10-168 97-258 (289)
152 TIGR02992 ectoine_eutC ectoine 98.5 3.7E-07 8.1E-12 85.4 7.8 119 7-146 99-226 (326)
153 PRK13301 putative L-aspartate 98.5 1.3E-06 2.8E-11 77.9 10.6 105 49-162 2-114 (267)
154 COG0169 AroE Shikimate 5-dehyd 98.5 6.5E-07 1.4E-11 81.3 8.8 146 10-168 94-248 (283)
155 PRK12749 quinate/shikimate deh 98.4 9E-07 1.9E-11 81.2 9.2 142 10-168 95-255 (288)
156 PRK00048 dihydrodipicolinate r 98.4 1.9E-06 4.1E-11 77.9 11.0 113 49-171 1-117 (257)
157 PRK14027 quinate/shikimate deh 98.4 9.5E-07 2E-11 80.8 8.8 141 12-168 100-251 (283)
158 PRK08618 ornithine cyclodeamin 98.4 6.6E-07 1.4E-11 83.7 8.0 116 12-150 102-227 (325)
159 PRK08291 ectoine utilization p 98.4 7.2E-07 1.6E-11 83.7 8.0 117 8-145 103-228 (330)
160 PRK07340 ornithine cyclodeamin 98.4 9.8E-07 2.1E-11 81.7 8.7 116 12-150 100-223 (304)
161 PRK06823 ornithine cyclodeamin 98.4 6.5E-07 1.4E-11 83.1 7.3 122 6-149 97-227 (315)
162 PRK06223 malate dehydrogenase; 98.4 1.9E-06 4.2E-11 80.0 10.2 92 49-146 2-121 (307)
163 PRK12550 shikimate 5-dehydroge 98.4 1.4E-06 2.9E-11 79.2 8.7 140 10-168 94-238 (272)
164 PRK13303 L-aspartate dehydroge 98.4 2.6E-06 5.7E-11 77.3 10.4 108 49-164 1-115 (265)
165 COG0059 IlvC Ketol-acid reduct 98.4 1.3E-06 2.8E-11 78.3 8.0 186 50-251 19-226 (338)
166 cd05213 NAD_bind_Glutamyl_tRNA 98.4 7.4E-07 1.6E-11 82.9 6.9 92 49-145 178-274 (311)
167 PRK14188 bifunctional 5,10-met 98.3 1.7E-06 3.8E-11 79.0 8.5 73 49-146 158-232 (296)
168 PRK02318 mannitol-1-phosphate 98.3 1E-06 2.3E-11 84.2 7.2 104 50-159 1-136 (381)
169 PTZ00075 Adenosylhomocysteinas 98.3 5.9E-06 1.3E-10 79.8 12.0 91 49-147 254-344 (476)
170 TIGR00036 dapB dihydrodipicoli 98.3 1E-05 2.2E-10 73.5 12.6 115 49-171 1-127 (266)
171 PF01488 Shikimate_DH: Shikima 98.3 8.8E-07 1.9E-11 72.0 5.1 69 49-117 12-87 (135)
172 TIGR01763 MalateDH_bact malate 98.3 3.9E-06 8.4E-11 77.7 9.9 91 50-146 2-120 (305)
173 PRK06046 alanine dehydrogenase 98.3 1.5E-06 3.3E-11 81.3 7.2 115 12-149 104-228 (326)
174 PRK06407 ornithine cyclodeamin 98.3 1.5E-06 3.2E-11 80.3 7.0 115 12-149 93-217 (301)
175 PF00670 AdoHcyase_NAD: S-aden 98.3 2.2E-06 4.8E-11 70.8 7.2 91 50-149 24-115 (162)
176 PRK07589 ornithine cyclodeamin 98.3 1.8E-06 3.8E-11 81.0 6.6 119 11-149 103-230 (346)
177 PF00056 Ldh_1_N: lactate/mala 98.2 2.4E-06 5.2E-11 69.9 6.5 92 50-146 1-120 (141)
178 TIGR00936 ahcY adenosylhomocys 98.2 1.1E-05 2.3E-10 77.1 11.4 100 50-157 196-296 (406)
179 TIGR01921 DAP-DH diaminopimela 98.2 1.2E-05 2.7E-10 74.1 11.4 109 49-167 3-118 (324)
180 COG2423 Predicted ornithine cy 98.2 3.3E-06 7.2E-11 78.3 7.5 137 9-168 102-249 (330)
181 PRK05476 S-adenosyl-L-homocyst 98.2 9E-06 2E-10 78.0 10.3 90 50-147 213-302 (425)
182 smart00859 Semialdhyde_dh Semi 98.2 7.3E-06 1.6E-10 65.3 7.8 91 51-146 1-101 (122)
183 PRK06199 ornithine cyclodeamin 98.2 3.3E-06 7.1E-11 80.3 6.5 113 12-143 130-258 (379)
184 COG0673 MviM Predicted dehydro 98.1 1.7E-05 3.7E-10 74.6 10.8 109 48-165 2-121 (342)
185 cd05291 HicDH_like L-2-hydroxy 98.1 9.7E-06 2.1E-10 75.3 8.9 91 50-145 1-118 (306)
186 cd00401 AdoHcyase S-adenosyl-L 98.1 1.5E-05 3.3E-10 76.3 10.2 89 50-146 203-291 (413)
187 KOG0068 D-3-phosphoglycerate d 98.1 4.5E-06 9.8E-11 75.7 6.2 106 50-160 147-252 (406)
188 PLN00203 glutamyl-tRNA reducta 98.1 1.2E-05 2.6E-10 79.3 9.8 92 50-145 267-370 (519)
189 PLN02494 adenosylhomocysteinas 98.1 1.8E-05 3.9E-10 76.3 10.4 88 50-146 255-343 (477)
190 PLN02819 lysine-ketoglutarate 98.1 2.3E-05 5E-10 82.7 11.7 111 48-167 568-701 (1042)
191 PF02423 OCD_Mu_crystall: Orni 98.1 3E-06 6.5E-11 78.8 4.6 119 11-149 102-229 (313)
192 PTZ00117 malate dehydrogenase; 98.1 2.6E-05 5.6E-10 72.8 10.7 91 50-146 6-124 (319)
193 PRK14179 bifunctional 5,10-met 98.0 1.4E-05 3E-10 72.5 7.7 73 50-146 159-232 (284)
194 cd05292 LDH_2 A subgroup of L- 98.0 1.3E-05 2.8E-10 74.4 7.6 66 50-116 1-78 (308)
195 PF00984 UDPG_MGDP_dh: UDP-glu 98.0 8.6E-05 1.9E-09 56.3 10.6 93 213-314 2-94 (96)
196 cd05297 GH4_alpha_glucosidase_ 98.0 1.5E-05 3.4E-10 77.1 8.1 65 50-114 1-83 (423)
197 COG0373 HemA Glutamyl-tRNA red 98.0 1.3E-05 2.8E-10 76.2 7.1 66 50-115 179-248 (414)
198 PRK00066 ldh L-lactate dehydro 98.0 2.6E-05 5.7E-10 72.6 9.0 69 47-115 4-83 (315)
199 PRK11579 putative oxidoreducta 98.0 5.5E-05 1.2E-09 71.5 11.3 108 49-165 4-118 (346)
200 COG5495 Uncharacterized conser 98.0 0.00026 5.7E-09 61.1 13.9 190 50-250 11-208 (289)
201 PF01118 Semialdhyde_dh: Semia 98.0 2.6E-05 5.7E-10 62.0 7.6 88 51-146 1-99 (121)
202 PLN02520 bifunctional 3-dehydr 98.0 5.2E-05 1.1E-09 75.5 11.0 149 13-168 343-497 (529)
203 cd01080 NAD_bind_m-THF_DH_Cycl 98.0 7.2E-05 1.6E-09 62.9 9.9 72 50-145 45-117 (168)
204 PRK04148 hypothetical protein; 97.9 4.4E-05 9.6E-10 61.2 8.0 92 50-147 18-114 (134)
205 COG0569 TrkA K+ transport syst 97.9 2.2E-05 4.8E-10 69.5 6.9 74 50-124 1-84 (225)
206 TIGR01035 hemA glutamyl-tRNA r 97.9 1.6E-05 3.6E-10 76.9 6.3 68 50-117 181-252 (417)
207 cd05293 LDH_1 A subgroup of L- 97.9 7.7E-05 1.7E-09 69.3 10.5 91 50-146 4-122 (312)
208 cd01339 LDH-like_MDH L-lactate 97.9 4.4E-05 9.5E-10 70.7 8.8 89 52-146 1-117 (300)
209 PTZ00082 L-lactate dehydrogena 97.9 6.4E-05 1.4E-09 70.1 9.5 63 50-113 7-82 (321)
210 PRK00045 hemA glutamyl-tRNA re 97.9 1.3E-05 2.7E-10 77.8 5.0 68 50-117 183-254 (423)
211 PRK13940 glutamyl-tRNA reducta 97.9 4.7E-05 1E-09 73.3 8.4 68 50-117 182-254 (414)
212 TIGR01761 thiaz-red thiazoliny 97.9 0.00025 5.5E-09 66.5 12.9 108 50-166 4-119 (343)
213 COG2910 Putative NADH-flavin r 97.9 2.8E-05 6.2E-10 64.9 5.7 66 50-115 1-72 (211)
214 TIGR00518 alaDH alanine dehydr 97.9 1.9E-05 4.1E-10 75.1 5.3 94 50-146 168-269 (370)
215 PF02254 TrkA_N: TrkA-N domain 97.8 0.00017 3.7E-09 56.6 9.7 73 52-124 1-81 (116)
216 PF03435 Saccharop_dh: Sacchar 97.8 4.2E-05 9E-10 73.4 7.0 108 52-168 1-121 (386)
217 PRK10206 putative oxidoreducta 97.8 0.00013 2.7E-09 69.0 9.8 108 49-165 1-118 (344)
218 cd01078 NAD_bind_H4MPT_DH NADP 97.8 5.3E-05 1.1E-09 65.5 6.6 90 50-146 29-131 (194)
219 cd05311 NAD_bind_2_malic_enz N 97.8 0.00018 4E-09 63.6 9.9 108 50-168 26-150 (226)
220 cd00650 LDH_MDH_like NAD-depen 97.8 0.00016 3.4E-09 65.7 9.6 90 52-146 1-121 (263)
221 cd05211 NAD_bind_Glu_Leu_Phe_V 97.8 0.0015 3.3E-08 57.4 15.4 109 49-168 23-149 (217)
222 PRK00436 argC N-acetyl-gamma-g 97.8 0.00012 2.5E-09 69.1 8.9 90 48-146 1-101 (343)
223 PRK06349 homoserine dehydrogen 97.7 0.00012 2.7E-09 70.9 9.0 111 49-166 3-127 (426)
224 PRK08300 acetaldehyde dehydrog 97.7 0.00017 3.8E-09 66.0 9.4 89 49-145 4-102 (302)
225 cd05191 NAD_bind_amino_acid_DH 97.7 0.00016 3.6E-09 53.7 7.6 61 50-144 24-86 (86)
226 TIGR03215 ac_ald_DH_ac acetald 97.7 0.00018 4E-09 65.5 9.4 87 50-144 2-95 (285)
227 PF13380 CoA_binding_2: CoA bi 97.7 0.00021 4.4E-09 56.4 8.3 102 50-166 1-106 (116)
228 PRK09496 trkA potassium transp 97.7 0.00011 2.3E-09 72.1 7.8 68 50-117 1-77 (453)
229 TIGR01759 MalateDH-SF1 malate 97.7 0.00027 5.7E-09 65.9 9.7 93 49-145 3-130 (323)
230 PRK04207 glyceraldehyde-3-phos 97.7 0.00014 3.1E-09 68.3 8.0 88 49-144 1-109 (341)
231 PRK05442 malate dehydrogenase; 97.7 0.00021 4.6E-09 66.7 8.7 94 48-145 3-131 (326)
232 cd00300 LDH_like L-lactate deh 97.7 0.00017 3.7E-09 66.7 8.1 88 52-145 1-116 (300)
233 PLN02602 lactate dehydrogenase 97.6 0.00023 4.9E-09 67.1 8.6 90 50-145 38-155 (350)
234 KOG2741 Dimeric dihydrodiol de 97.6 0.00029 6.3E-09 64.7 8.8 112 49-168 6-129 (351)
235 PRK10669 putative cation:proto 97.6 0.00039 8.5E-09 70.0 10.6 75 50-124 418-500 (558)
236 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.00034 7.4E-09 61.9 9.0 108 49-168 31-158 (227)
237 PF10100 DUF2338: Uncharacteri 97.6 0.017 3.7E-07 54.4 20.2 200 49-256 1-282 (429)
238 cd01338 MDH_choloroplast_like 97.6 0.00027 5.8E-09 66.0 8.3 93 49-145 2-129 (322)
239 TIGR02354 thiF_fam2 thiamine b 97.6 0.00019 4.1E-09 62.3 6.8 32 50-81 22-54 (200)
240 PRK03659 glutathione-regulated 97.6 0.00044 9.5E-09 70.2 10.4 92 49-145 400-499 (601)
241 PRK14192 bifunctional 5,10-met 97.6 0.00045 9.8E-09 63.1 9.2 95 16-145 137-232 (283)
242 PF03447 NAD_binding_3: Homose 97.5 0.00023 5E-09 56.2 6.4 101 56-165 1-114 (117)
243 PRK14175 bifunctional 5,10-met 97.5 0.00034 7.3E-09 63.7 8.2 74 49-146 158-232 (286)
244 PRK00961 H(2)-dependent methyl 97.5 0.005 1.1E-07 54.8 15.0 108 92-209 128-241 (342)
245 cd05294 LDH-like_MDH_nadp A la 97.5 0.00052 1.1E-08 63.7 9.2 64 50-114 1-81 (309)
246 COG0289 DapB Dihydrodipicolina 97.5 0.00086 1.9E-08 59.6 9.9 115 48-172 1-127 (266)
247 TIGR01723 hmd_TIGR 5,10-methen 97.5 0.0062 1.3E-07 54.3 15.0 108 92-209 126-239 (340)
248 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00036 7.8E-09 64.6 7.9 90 50-146 1-119 (310)
249 PF00393 6PGD: 6-phosphoglucon 97.5 0.0008 1.7E-08 61.0 9.8 96 215-310 1-106 (291)
250 TIGR01850 argC N-acetyl-gamma- 97.5 0.00048 1.1E-08 65.0 8.8 89 50-146 1-101 (346)
251 cd01487 E1_ThiF_like E1_ThiF_l 97.5 0.00045 9.7E-09 58.6 7.7 32 51-82 1-33 (174)
252 PRK06270 homoserine dehydrogen 97.5 0.00045 9.7E-09 65.1 8.1 114 49-166 2-148 (341)
253 PRK15076 alpha-galactosidase; 97.4 0.00015 3.2E-09 70.4 4.9 68 49-116 1-86 (431)
254 PLN00112 malate dehydrogenase 97.4 0.00061 1.3E-08 65.9 8.9 93 49-145 100-227 (444)
255 PRK05086 malate dehydrogenase; 97.4 0.00071 1.5E-08 62.9 9.0 92 50-146 1-120 (312)
256 PRK06719 precorrin-2 dehydroge 97.4 0.001 2.3E-08 55.3 9.0 71 50-123 14-87 (157)
257 PTZ00325 malate dehydrogenase; 97.4 0.00069 1.5E-08 63.0 8.4 72 44-115 3-86 (321)
258 PF08546 ApbA_C: Ketopantoate 97.4 0.0018 3.9E-08 51.6 9.7 79 229-316 40-124 (125)
259 PRK08374 homoserine dehydrogen 97.4 0.00077 1.7E-08 63.3 8.5 112 49-168 2-147 (336)
260 COG0039 Mdh Malate/lactate deh 97.4 0.00082 1.8E-08 61.8 8.4 65 50-114 1-78 (313)
261 cd01483 E1_enzyme_family Super 97.4 0.0024 5.1E-08 52.2 10.3 113 51-172 1-124 (143)
262 cd00704 MDH Malate dehydrogena 97.3 0.00083 1.8E-08 62.7 8.2 91 51-145 2-127 (323)
263 PRK03562 glutathione-regulated 97.3 0.0012 2.6E-08 67.3 9.9 110 49-168 400-517 (621)
264 cd05290 LDH_3 A subgroup of L- 97.3 0.00057 1.2E-08 63.3 6.6 64 51-114 1-77 (307)
265 PF01262 AlaDh_PNT_C: Alanine 97.3 0.00035 7.7E-09 58.9 4.8 94 49-145 20-140 (168)
266 TIGR02356 adenyl_thiF thiazole 97.3 0.00084 1.8E-08 58.4 7.1 33 50-82 22-55 (202)
267 PRK05472 redox-sensing transcr 97.3 0.00044 9.5E-09 60.7 5.3 68 50-118 85-159 (213)
268 TIGR00561 pntA NAD(P) transhyd 97.3 0.00086 1.9E-08 65.9 7.7 90 49-146 164-286 (511)
269 PRK14189 bifunctional 5,10-met 97.2 0.0011 2.5E-08 60.2 7.9 73 50-146 159-232 (285)
270 PRK08644 thiamine biosynthesis 97.2 0.0011 2.3E-08 58.2 7.4 32 50-81 29-61 (212)
271 PRK06718 precorrin-2 dehydroge 97.2 0.0011 2.3E-08 57.8 7.3 74 50-124 11-88 (202)
272 PRK14874 aspartate-semialdehyd 97.2 0.00096 2.1E-08 62.7 7.6 90 49-146 1-96 (334)
273 PRK11861 bifunctional prephena 97.2 0.017 3.7E-07 59.6 17.2 113 109-226 1-126 (673)
274 TIGR01772 MDH_euk_gproteo mala 97.2 0.0011 2.5E-08 61.4 7.7 91 51-146 1-118 (312)
275 PRK09424 pntA NAD(P) transhydr 97.2 0.00079 1.7E-08 66.3 6.5 89 49-145 165-286 (509)
276 PRK12475 thiamine/molybdopteri 97.2 0.0011 2.3E-08 62.4 7.2 33 50-82 25-58 (338)
277 PRK05671 aspartate-semialdehyd 97.2 0.0012 2.6E-08 61.9 7.4 89 48-146 3-99 (336)
278 PRK00683 murD UDP-N-acetylmura 97.2 0.0041 8.9E-08 60.4 11.5 114 50-163 4-129 (418)
279 PRK10792 bifunctional 5,10-met 97.2 0.0017 3.7E-08 59.0 8.2 72 50-145 160-232 (285)
280 PLN00106 malate dehydrogenase 97.2 0.0016 3.6E-08 60.6 8.2 66 50-115 19-96 (323)
281 TIGR01757 Malate-DH_plant mala 97.2 0.0018 3.8E-08 61.7 8.5 93 49-145 44-171 (387)
282 COG0002 ArgC Acetylglutamate s 97.1 0.0018 4E-08 59.8 8.1 91 48-146 1-103 (349)
283 PLN02968 Probable N-acetyl-gam 97.1 0.0025 5.4E-08 60.8 9.4 91 47-146 36-136 (381)
284 cd01336 MDH_cytoplasmic_cytoso 97.1 0.0025 5.5E-08 59.6 9.3 93 49-145 2-129 (325)
285 PF13460 NAD_binding_10: NADH( 97.1 0.0012 2.6E-08 56.1 6.6 62 52-115 1-70 (183)
286 PF02882 THF_DHG_CYH_C: Tetrah 97.1 0.0019 4.2E-08 53.7 7.5 74 49-146 36-110 (160)
287 PRK09496 trkA potassium transp 97.1 0.0032 6.8E-08 61.7 9.9 68 49-116 231-308 (453)
288 TIGR01771 L-LDH-NAD L-lactate 97.1 0.0016 3.5E-08 60.1 7.3 87 54-145 1-114 (299)
289 PF02629 CoA_binding: CoA bind 97.1 0.0013 2.8E-08 50.0 5.4 73 50-124 4-80 (96)
290 PRK06392 homoserine dehydrogen 97.0 0.0015 3.2E-08 61.0 6.7 113 50-166 1-139 (326)
291 PRK01710 murD UDP-N-acetylmura 97.0 0.01 2.3E-07 58.3 12.9 115 50-165 15-146 (458)
292 PRK14176 bifunctional 5,10-met 97.0 0.0027 5.9E-08 57.7 7.8 72 50-145 165-237 (287)
293 PRK00676 hemA glutamyl-tRNA re 97.0 0.0049 1.1E-07 57.5 9.7 59 50-113 175-234 (338)
294 PLN02383 aspartate semialdehyd 97.0 0.0025 5.4E-08 60.0 7.8 89 49-145 7-101 (344)
295 PRK14982 acyl-ACP reductase; P 97.0 0.0019 4.2E-08 60.3 6.9 89 49-145 155-247 (340)
296 CHL00194 ycf39 Ycf39; Provisio 97.0 0.0016 3.5E-08 60.6 6.5 65 50-114 1-73 (317)
297 PRK00141 murD UDP-N-acetylmura 97.0 0.0065 1.4E-07 59.9 11.0 115 49-164 15-149 (473)
298 PRK11863 N-acetyl-gamma-glutam 97.0 0.0036 7.9E-08 57.9 8.5 80 48-145 1-82 (313)
299 TIGR01758 MDH_euk_cyt malate d 97.0 0.0028 6.1E-08 59.2 7.7 91 51-145 1-126 (324)
300 COG0686 Ald Alanine dehydrogen 96.9 0.00093 2E-08 60.5 4.0 92 50-145 169-269 (371)
301 PRK03369 murD UDP-N-acetylmura 96.9 0.014 2.9E-07 57.9 12.6 115 50-164 13-145 (488)
302 COG1064 AdhP Zn-dependent alco 96.9 0.0033 7.2E-08 58.4 7.7 87 50-145 168-260 (339)
303 COG2344 AT-rich DNA-binding pr 96.9 0.0014 3E-08 55.0 4.6 75 48-124 83-164 (211)
304 COG4408 Uncharacterized protei 96.9 0.26 5.7E-06 45.2 19.2 200 48-256 3-284 (431)
305 COG0771 MurD UDP-N-acetylmuram 96.9 0.013 2.8E-07 56.8 11.7 126 49-174 7-148 (448)
306 PLN02477 glutamate dehydrogena 96.9 0.0048 1E-07 59.2 8.8 108 49-168 206-333 (410)
307 TIGR01470 cysG_Nterm siroheme 96.9 0.0087 1.9E-07 52.1 9.7 67 50-116 10-80 (205)
308 PRK14191 bifunctional 5,10-met 96.9 0.0036 7.9E-08 56.9 7.3 73 50-146 158-231 (285)
309 PRK02472 murD UDP-N-acetylmura 96.8 0.024 5.1E-07 55.5 13.2 113 50-163 6-135 (447)
310 PF00899 ThiF: ThiF family; I 96.8 0.0056 1.2E-07 49.5 7.3 110 50-171 3-126 (135)
311 TIGR02717 AcCoA-syn-alpha acet 96.8 0.0079 1.7E-07 58.8 9.6 105 50-166 8-125 (447)
312 cd01079 NAD_bind_m-THF_DH NAD 96.8 0.0068 1.5E-07 51.8 7.8 86 49-146 62-158 (197)
313 PRK08664 aspartate-semialdehyd 96.8 0.0058 1.3E-07 57.8 8.3 89 48-145 2-108 (349)
314 cd05313 NAD_bind_2_Glu_DH NAD( 96.7 0.082 1.8E-06 47.5 14.7 111 49-168 38-176 (254)
315 PRK14183 bifunctional 5,10-met 96.7 0.0062 1.3E-07 55.2 7.7 73 50-146 158-231 (281)
316 TIGR02355 moeB molybdopterin s 96.7 0.014 3E-07 52.2 9.8 114 50-172 25-149 (240)
317 PRK07688 thiamine/molybdopteri 96.7 0.0085 1.8E-07 56.4 8.9 33 50-82 25-58 (339)
318 PRK06728 aspartate-semialdehyd 96.7 0.0056 1.2E-07 57.5 7.6 87 50-145 6-100 (347)
319 PRK01390 murD UDP-N-acetylmura 96.7 0.018 3.9E-07 56.7 11.5 115 50-165 10-143 (460)
320 PRK14106 murD UDP-N-acetylmura 96.7 0.018 3.9E-07 56.4 11.4 113 50-162 6-134 (450)
321 PRK09414 glutamate dehydrogena 96.7 0.0086 1.9E-07 58.0 8.8 111 49-168 232-366 (445)
322 cd05212 NAD_bind_m-THF_DH_Cycl 96.6 0.013 2.8E-07 47.7 8.4 73 50-146 29-102 (140)
323 PF05368 NmrA: NmrA-like famil 96.6 0.0044 9.5E-08 54.9 6.2 63 52-114 1-73 (233)
324 PRK06153 hypothetical protein; 96.6 0.0049 1.1E-07 58.2 6.7 32 50-81 177-209 (393)
325 PF13241 NAD_binding_7: Putati 96.6 0.0066 1.4E-07 46.7 6.3 70 49-123 7-77 (103)
326 PRK08762 molybdopterin biosynt 96.6 0.0071 1.5E-07 57.8 7.4 111 50-172 136-260 (376)
327 PRK08328 hypothetical protein; 96.5 0.016 3.4E-07 51.6 8.9 115 50-173 28-154 (231)
328 PLN02775 Probable dihydrodipic 96.5 0.034 7.5E-07 50.5 11.1 115 48-172 10-137 (286)
329 COG0460 ThrA Homoserine dehydr 96.5 0.0086 1.9E-07 55.5 7.3 119 48-171 2-142 (333)
330 PRK05678 succinyl-CoA syntheta 96.5 0.038 8.2E-07 50.7 11.5 107 50-166 9-120 (291)
331 PRK14178 bifunctional 5,10-met 96.5 0.0084 1.8E-07 54.4 7.0 73 50-146 153-226 (279)
332 PRK08040 putative semialdehyde 96.5 0.0083 1.8E-07 56.2 7.2 88 49-145 4-98 (336)
333 cd05197 GH4_glycoside_hydrolas 96.5 0.016 3.5E-07 56.1 9.2 64 50-113 1-82 (425)
334 TIGR01546 GAPDH-II_archae glyc 96.4 0.0069 1.5E-07 56.5 6.3 68 52-119 1-89 (333)
335 PRK06598 aspartate-semialdehyd 96.4 0.0083 1.8E-07 56.7 6.9 88 49-145 1-99 (369)
336 cd00757 ThiF_MoeB_HesA_family 96.4 0.024 5.1E-07 50.3 9.4 33 50-82 22-55 (228)
337 TIGR01296 asd_B aspartate-semi 96.4 0.0064 1.4E-07 57.2 6.1 87 51-145 1-93 (339)
338 cd01486 Apg7 Apg7 is an E1-lik 96.4 0.0094 2E-07 54.5 6.8 31 51-81 1-32 (307)
339 TIGR01019 sucCoAalpha succinyl 96.4 0.047 1E-06 50.0 11.4 108 50-166 7-118 (286)
340 cd05298 GH4_GlvA_pagL_like Gly 96.4 0.018 3.8E-07 56.0 9.0 64 50-113 1-82 (437)
341 cd01492 Aos1_SUMO Ubiquitin ac 96.4 0.048 1E-06 47.2 10.8 113 50-172 22-145 (197)
342 PRK05690 molybdopterin biosynt 96.4 0.023 5.1E-07 50.9 9.1 112 50-170 33-155 (245)
343 COG0136 Asd Aspartate-semialde 96.3 0.013 2.8E-07 54.2 7.4 89 49-145 1-98 (334)
344 COG1063 Tdh Threonine dehydrog 96.3 0.017 3.6E-07 54.7 8.5 87 51-145 171-270 (350)
345 TIGR01082 murC UDP-N-acetylmur 96.3 0.057 1.2E-06 52.9 12.5 113 51-163 1-126 (448)
346 TIGR00978 asd_EA aspartate-sem 96.3 0.014 3.1E-07 55.0 7.9 89 50-146 1-106 (341)
347 PF03720 UDPG_MGDP_dh_C: UDP-g 96.3 0.0065 1.4E-07 47.0 4.6 81 61-146 19-103 (106)
348 KOG3007 Mu-crystallin [Amino a 96.3 0.015 3.3E-07 51.7 7.2 109 50-168 139-260 (333)
349 PRK12769 putative oxidoreducta 96.3 0.021 4.6E-07 58.7 9.5 36 48-83 326-361 (654)
350 TIGR03736 PRTRC_ThiF PRTRC sys 96.3 0.016 3.6E-07 51.6 7.5 32 50-81 12-54 (244)
351 TIGR01087 murD UDP-N-acetylmur 96.3 0.032 6.8E-07 54.4 10.2 118 51-168 1-134 (433)
352 PRK14173 bifunctional 5,10-met 96.3 0.019 4.1E-07 52.3 7.9 73 50-146 156-229 (287)
353 PRK08223 hypothetical protein; 96.3 0.023 5E-07 51.8 8.5 112 50-172 28-154 (287)
354 PRK12809 putative oxidoreducta 96.2 0.019 4.1E-07 58.9 8.9 67 48-114 309-404 (639)
355 PRK01438 murD UDP-N-acetylmura 96.2 0.041 8.8E-07 54.4 11.0 114 50-163 17-149 (480)
356 TIGR01851 argC_other N-acetyl- 96.2 0.023 5E-07 52.3 8.4 78 50-145 2-81 (310)
357 PRK14186 bifunctional 5,10-met 96.2 0.019 4.2E-07 52.5 7.9 73 50-146 159-232 (297)
358 COG4091 Predicted homoserine d 96.2 0.042 9E-07 50.8 9.8 40 50-89 18-59 (438)
359 PRK14177 bifunctional 5,10-met 96.2 0.021 4.5E-07 51.9 8.0 73 50-146 160-233 (284)
360 TIGR02130 dapB_plant dihydrodi 96.2 0.049 1.1E-06 49.3 10.3 112 51-172 2-126 (275)
361 PRK05600 thiamine biosynthesis 96.2 0.015 3.2E-07 55.4 7.3 33 50-82 42-75 (370)
362 PLN00141 Tic62-NAD(P)-related 96.2 0.013 2.8E-07 52.6 6.6 42 46-87 14-56 (251)
363 PRK04308 murD UDP-N-acetylmura 96.2 0.064 1.4E-06 52.5 12.0 115 49-164 5-138 (445)
364 COG1648 CysG Siroheme synthase 96.2 0.051 1.1E-06 47.4 10.0 69 50-120 13-86 (210)
365 PRK14170 bifunctional 5,10-met 96.2 0.022 4.8E-07 51.8 7.9 73 50-146 158-231 (284)
366 PRK14166 bifunctional 5,10-met 96.2 0.021 4.5E-07 51.9 7.7 72 50-145 158-230 (282)
367 PRK10537 voltage-gated potassi 96.2 0.049 1.1E-06 52.3 10.7 107 50-169 241-356 (393)
368 cd01485 E1-1_like Ubiquitin ac 96.2 0.091 2E-06 45.5 11.5 114 50-171 20-147 (198)
369 PRK14172 bifunctional 5,10-met 96.2 0.021 4.6E-07 51.7 7.7 73 49-145 158-231 (278)
370 PRK14169 bifunctional 5,10-met 96.1 0.023 4.9E-07 51.7 7.8 72 50-145 157-229 (282)
371 PRK02006 murD UDP-N-acetylmura 96.1 0.063 1.4E-06 53.4 11.8 115 50-164 8-149 (498)
372 COG0190 FolD 5,10-methylene-te 96.1 0.019 4.2E-07 51.7 7.2 74 49-146 156-230 (283)
373 COG0334 GdhA Glutamate dehydro 96.1 0.03 6.6E-07 53.1 8.8 108 50-168 208-334 (411)
374 PF00070 Pyr_redox: Pyridine n 96.1 0.013 2.8E-07 42.6 5.1 35 51-85 1-35 (80)
375 PRK00421 murC UDP-N-acetylmura 96.1 0.014 2.9E-07 57.5 6.8 114 49-162 7-133 (461)
376 PRK14180 bifunctional 5,10-met 96.1 0.025 5.3E-07 51.5 7.7 72 50-145 159-231 (282)
377 TIGR03649 ergot_EASG ergot alk 96.1 0.0087 1.9E-07 54.7 4.9 65 51-115 1-77 (285)
378 PRK14171 bifunctional 5,10-met 96.1 0.026 5.7E-07 51.4 7.8 72 50-145 160-232 (288)
379 PRK11908 NAD-dependent epimera 96.0 0.012 2.7E-07 55.4 6.0 65 49-113 1-76 (347)
380 PRK05597 molybdopterin biosynt 96.0 0.04 8.7E-07 52.2 9.3 33 50-82 29-62 (355)
381 PF02056 Glyco_hydro_4: Family 96.0 0.012 2.5E-07 50.1 5.1 65 51-115 1-83 (183)
382 cd00755 YgdL_like Family of ac 96.0 0.058 1.3E-06 47.8 9.7 113 50-173 12-138 (231)
383 cd08230 glucose_DH Glucose deh 96.0 0.033 7.2E-07 52.6 8.7 75 50-124 174-257 (355)
384 TIGR01318 gltD_gamma_fam gluta 96.0 0.042 9.2E-07 54.1 9.6 35 48-82 140-174 (467)
385 TIGR03855 NAD_NadX aspartate d 96.0 0.028 6.2E-07 49.7 7.5 84 75-166 5-93 (229)
386 PLN02516 methylenetetrahydrofo 96.0 0.03 6.5E-07 51.3 7.8 73 50-146 168-241 (299)
387 COG0026 PurK Phosphoribosylami 96.0 0.016 3.4E-07 54.1 6.0 61 49-109 1-66 (375)
388 PRK14187 bifunctional 5,10-met 96.0 0.03 6.4E-07 51.2 7.7 72 50-145 161-233 (294)
389 PRK09880 L-idonate 5-dehydroge 96.0 0.044 9.5E-07 51.6 9.3 45 50-94 171-216 (343)
390 cd01484 E1-2_like Ubiquitin ac 95.9 0.033 7.1E-07 49.5 7.8 32 51-82 1-33 (234)
391 PRK12409 D-amino acid dehydrog 95.9 0.011 2.3E-07 57.2 5.1 34 49-82 1-34 (410)
392 PRK14190 bifunctional 5,10-met 95.9 0.031 6.7E-07 50.9 7.6 73 49-145 158-231 (284)
393 PRK14193 bifunctional 5,10-met 95.9 0.033 7.1E-07 50.7 7.8 73 50-146 159-234 (284)
394 TIGR00873 gnd 6-phosphoglucona 95.9 0.19 4E-06 49.5 13.6 120 215-338 312-446 (467)
395 cd01488 Uba3_RUB Ubiquitin act 95.9 0.029 6.4E-07 51.4 7.5 31 51-81 1-32 (291)
396 PRK03803 murD UDP-N-acetylmura 95.9 0.066 1.4E-06 52.5 10.5 122 50-171 7-143 (448)
397 KOG1502 Flavonol reductase/cin 95.9 0.021 4.6E-07 52.8 6.5 66 48-113 5-86 (327)
398 COG1486 CelF Alpha-galactosida 95.9 0.032 6.8E-07 53.6 7.9 65 49-113 3-85 (442)
399 PRK15116 sulfur acceptor prote 95.8 0.16 3.4E-06 46.1 11.8 112 50-172 31-156 (268)
400 PRK14182 bifunctional 5,10-met 95.8 0.04 8.6E-07 50.1 7.9 74 49-146 157-231 (282)
401 PLN02695 GDP-D-mannose-3',5'-e 95.8 0.018 4E-07 54.9 6.2 70 44-113 16-93 (370)
402 cd01489 Uba2_SUMO Ubiquitin ac 95.8 0.03 6.6E-07 51.8 7.3 32 51-82 1-33 (312)
403 PRK06813 homoserine dehydrogen 95.8 0.023 5E-07 53.5 6.5 111 49-166 2-145 (346)
404 TIGR03366 HpnZ_proposed putati 95.8 0.045 9.8E-07 49.9 8.4 75 50-124 122-206 (280)
405 PF10728 DUF2520: Domain of un 95.7 0.33 7.1E-06 39.1 12.1 126 184-316 4-130 (132)
406 TIGR03466 HpnA hopanoid-associ 95.7 0.018 3.9E-07 53.5 5.5 64 50-113 1-72 (328)
407 PRK07878 molybdopterin biosynt 95.7 0.068 1.5E-06 51.4 9.5 33 50-82 43-76 (392)
408 PLN02616 tetrahydrofolate dehy 95.7 0.04 8.7E-07 51.6 7.6 72 50-145 232-304 (364)
409 PRK05653 fabG 3-ketoacyl-(acyl 95.7 0.044 9.5E-07 48.4 7.7 39 49-87 5-44 (246)
410 PRK08306 dipicolinate synthase 95.7 0.16 3.5E-06 46.9 11.4 111 50-168 3-120 (296)
411 PRK14181 bifunctional 5,10-met 95.6 0.05 1.1E-06 49.6 7.8 72 50-145 154-230 (287)
412 COG0499 SAM1 S-adenosylhomocys 95.6 0.024 5.2E-07 52.6 5.7 86 50-144 210-296 (420)
413 PLN02897 tetrahydrofolate dehy 95.6 0.047 1E-06 50.9 7.7 72 50-145 215-287 (345)
414 KOG0022 Alcohol dehydrogenase, 95.6 0.052 1.1E-06 49.6 7.7 75 50-124 194-281 (375)
415 PRK05562 precorrin-2 dehydroge 95.6 0.1 2.2E-06 45.9 9.4 74 49-124 25-103 (223)
416 PRK14852 hypothetical protein; 95.6 0.061 1.3E-06 56.7 9.1 116 49-172 332-459 (989)
417 cd01491 Ube1_repeat1 Ubiquitin 95.6 0.081 1.7E-06 48.4 9.0 33 50-82 20-53 (286)
418 PRK02705 murD UDP-N-acetylmura 95.6 0.097 2.1E-06 51.4 10.3 112 51-163 2-136 (459)
419 PRK12814 putative NADPH-depend 95.5 0.051 1.1E-06 55.9 8.4 35 49-83 193-227 (652)
420 PRK06019 phosphoribosylaminoim 95.5 0.033 7.1E-07 53.2 6.6 63 49-111 2-69 (372)
421 PRK09287 6-phosphogluconate de 95.5 0.29 6.2E-06 48.0 13.1 120 215-338 304-438 (459)
422 cd05296 GH4_P_beta_glucosidase 95.5 0.03 6.6E-07 54.2 6.3 64 50-113 1-83 (419)
423 PRK07411 hypothetical protein; 95.5 0.08 1.7E-06 50.9 9.1 32 50-81 39-71 (390)
424 PLN02657 3,8-divinyl protochlo 95.5 0.022 4.8E-07 54.8 5.3 38 47-84 58-96 (390)
425 PRK14030 glutamate dehydrogena 95.5 0.058 1.3E-06 52.2 8.0 111 49-168 228-366 (445)
426 COG1090 Predicted nucleoside-d 95.4 0.049 1.1E-06 48.9 6.8 61 56-116 6-67 (297)
427 PRK04663 murD UDP-N-acetylmura 95.4 0.21 4.6E-06 48.8 12.0 116 49-165 7-137 (438)
428 PRK14851 hypothetical protein; 95.4 0.097 2.1E-06 53.7 9.9 111 50-171 44-169 (679)
429 PRK05868 hypothetical protein; 95.4 0.022 4.7E-07 54.4 4.9 36 49-84 1-36 (372)
430 PRK14168 bifunctional 5,10-met 95.4 0.067 1.5E-06 49.0 7.7 72 50-145 162-238 (297)
431 COG0300 DltE Short-chain dehyd 95.3 0.077 1.7E-06 47.9 7.9 43 49-91 6-49 (265)
432 PRK14185 bifunctional 5,10-met 95.3 0.068 1.5E-06 48.9 7.6 73 50-146 158-235 (293)
433 PRK03815 murD UDP-N-acetylmura 95.3 0.092 2E-06 50.7 8.9 107 50-162 1-115 (401)
434 PRK00517 prmA ribosomal protei 95.3 0.11 2.4E-06 46.7 8.8 110 50-167 121-235 (250)
435 PLN00016 RNA-binding protein; 95.3 0.15 3.3E-06 48.7 10.3 39 46-84 49-92 (378)
436 PRK14573 bifunctional D-alanyl 95.2 0.15 3.3E-06 53.8 11.0 115 49-163 4-131 (809)
437 PRK14167 bifunctional 5,10-met 95.2 0.077 1.7E-06 48.6 7.6 72 50-145 158-234 (297)
438 PRK10538 malonic semialdehyde 95.2 0.082 1.8E-06 47.1 7.8 39 50-88 1-40 (248)
439 PRK00711 D-amino acid dehydrog 95.2 0.028 6.1E-07 54.3 5.0 33 50-82 1-33 (416)
440 PRK05993 short chain dehydroge 95.2 0.087 1.9E-06 47.9 8.0 41 50-90 5-46 (277)
441 PLN02427 UDP-apiose/xylose syn 95.1 0.047 1E-06 52.3 6.3 65 49-113 14-94 (386)
442 PRK06753 hypothetical protein; 95.1 0.029 6.4E-07 53.3 4.9 34 50-83 1-34 (373)
443 PRK05884 short chain dehydroge 95.1 0.047 1E-06 48.0 5.8 40 50-89 1-41 (223)
444 PRK07454 short chain dehydroge 95.1 0.083 1.8E-06 46.7 7.3 40 49-88 6-46 (241)
445 TIGR01745 asd_gamma aspartate- 95.0 0.061 1.3E-06 50.8 6.6 88 50-145 1-98 (366)
446 PLN03209 translocon at the inn 95.0 0.056 1.2E-06 54.0 6.6 39 50-88 81-120 (576)
447 PF00208 ELFV_dehydrog: Glutam 95.0 0.74 1.6E-05 41.2 13.3 110 50-168 33-169 (244)
448 KOG1370 S-adenosylhomocysteine 95.0 0.11 2.3E-06 47.3 7.7 87 51-146 215-303 (434)
449 PRK06182 short chain dehydroge 95.0 0.13 2.8E-06 46.5 8.6 40 50-89 4-44 (273)
450 TIGR01202 bchC 2-desacetyl-2-h 95.0 0.11 2.3E-06 48.2 8.1 85 50-144 146-231 (308)
451 PLN02896 cinnamyl-alcohol dehy 95.0 0.063 1.4E-06 50.7 6.7 39 48-86 9-48 (353)
452 PLN02662 cinnamyl-alcohol dehy 95.0 0.087 1.9E-06 48.8 7.5 64 50-113 5-84 (322)
453 PRK08017 oxidoreductase; Provi 95.0 0.048 1E-06 48.7 5.6 40 50-89 3-43 (256)
454 TIGR01777 yfcH conserved hypot 95.0 0.066 1.4E-06 48.7 6.6 63 52-114 1-66 (292)
455 PRK08163 salicylate hydroxylas 95.0 0.036 7.8E-07 53.1 5.0 35 49-83 4-38 (396)
456 PRK05693 short chain dehydroge 95.0 0.13 2.8E-06 46.6 8.5 41 49-89 1-42 (274)
457 COG0493 GltD NADPH-dependent g 95.0 0.094 2E-06 51.3 7.9 66 49-114 123-217 (457)
458 PRK14031 glutamate dehydrogena 95.0 0.15 3.2E-06 49.5 9.1 110 49-168 228-365 (444)
459 PRK12810 gltD glutamate syntha 94.9 0.1 2.2E-06 51.6 8.2 35 48-82 142-176 (471)
460 TIGR02964 xanthine_xdhC xanthi 94.9 0.27 5.9E-06 44.0 10.2 70 50-120 101-175 (246)
461 PRK07236 hypothetical protein; 94.9 0.041 8.9E-07 52.7 5.3 35 49-83 6-40 (386)
462 PF13450 NAD_binding_8: NAD(P) 94.9 0.051 1.1E-06 38.3 4.4 30 54-83 1-30 (68)
463 KOG0399 Glutamate synthase [Am 94.8 0.12 2.5E-06 54.8 8.4 66 48-113 1784-1878(2142)
464 PRK06180 short chain dehydroge 94.8 0.12 2.7E-06 46.9 8.0 42 49-90 4-46 (277)
465 PRK13535 erythrose 4-phosphate 94.8 0.069 1.5E-06 50.0 6.3 30 49-78 1-32 (336)
466 PRK05569 flavodoxin; Provision 94.8 1.7 3.7E-05 35.0 14.5 123 49-203 1-139 (141)
467 PRK07024 short chain dehydroge 94.8 0.097 2.1E-06 46.9 7.1 41 49-89 2-43 (257)
468 PRK12779 putative bifunctional 94.8 0.084 1.8E-06 56.4 7.5 67 49-115 306-402 (944)
469 COG0654 UbiH 2-polyprenyl-6-me 94.7 0.041 8.9E-07 52.8 4.8 33 49-81 2-34 (387)
470 PRK08177 short chain dehydroge 94.7 0.092 2E-06 46.0 6.6 40 49-88 1-41 (225)
471 PRK06847 hypothetical protein; 94.7 0.047 1E-06 51.9 5.1 36 48-83 3-38 (375)
472 PRK14174 bifunctional 5,10-met 94.7 0.13 2.8E-06 47.2 7.6 72 50-145 160-236 (295)
473 cd08237 ribitol-5-phosphate_DH 94.7 0.095 2.1E-06 49.3 7.0 63 50-114 165-231 (341)
474 PTZ00079 NADP-specific glutama 94.7 0.17 3.7E-06 49.1 8.7 112 49-168 237-375 (454)
475 PRK12771 putative glutamate sy 94.7 0.064 1.4E-06 54.2 6.1 67 49-115 137-232 (564)
476 TIGR01532 E4PD_g-proteo D-eryt 94.6 0.11 2.4E-06 48.5 7.2 28 51-78 1-32 (325)
477 PRK07045 putative monooxygenas 94.6 0.05 1.1E-06 52.1 5.1 37 48-84 4-40 (388)
478 PRK12939 short chain dehydroge 94.6 0.15 3.2E-06 45.2 7.9 39 50-88 8-47 (250)
479 PRK03806 murD UDP-N-acetylmura 94.6 0.39 8.5E-06 46.8 11.4 115 50-165 7-134 (438)
480 PRK07364 2-octaprenyl-6-methox 94.6 0.063 1.4E-06 51.8 5.8 36 48-83 17-52 (415)
481 PRK14184 bifunctional 5,10-met 94.6 0.12 2.7E-06 47.1 7.2 72 50-145 158-234 (286)
482 PLN02214 cinnamoyl-CoA reducta 94.6 0.072 1.6E-06 50.2 6.0 67 48-114 9-90 (342)
483 PRK05866 short chain dehydroge 94.6 0.16 3.5E-06 46.6 8.2 40 50-89 41-81 (293)
484 COG0773 MurC UDP-N-acetylmuram 94.6 0.68 1.5E-05 44.9 12.4 113 49-161 7-132 (459)
485 PRK05876 short chain dehydroge 94.6 0.12 2.5E-06 47.1 7.1 38 51-88 8-46 (275)
486 KOG1495 Lactate dehydrogenase 94.5 0.16 3.5E-06 45.4 7.5 65 49-114 20-97 (332)
487 TIGR01317 GOGAT_sm_gam glutama 94.5 0.29 6.3E-06 48.5 10.2 34 49-82 143-176 (485)
488 PF01494 FAD_binding_3: FAD bi 94.5 0.057 1.2E-06 50.3 5.0 35 50-84 2-36 (356)
489 PRK06901 aspartate-semialdehyd 94.5 0.05 1.1E-06 50.2 4.4 87 49-145 3-96 (322)
490 PRK07538 hypothetical protein; 94.5 0.051 1.1E-06 52.6 4.8 34 50-83 1-34 (413)
491 PLN02650 dihydroflavonol-4-red 94.5 0.16 3.4E-06 48.0 7.9 65 49-113 5-85 (351)
492 PRK07825 short chain dehydroge 94.4 0.18 4E-06 45.5 8.1 40 50-89 6-46 (273)
493 PF04321 RmlD_sub_bind: RmlD s 94.4 0.033 7.1E-07 51.2 3.2 56 50-113 1-59 (286)
494 PRK09466 metL bifunctional asp 94.4 0.38 8.3E-06 50.5 11.3 22 49-70 458-479 (810)
495 PRK07494 2-octaprenyl-6-methox 94.4 0.06 1.3E-06 51.5 5.0 34 50-83 8-41 (388)
496 COG0451 WcaG Nucleoside-diphos 94.4 0.085 1.8E-06 48.5 5.9 38 50-87 1-39 (314)
497 COG4074 Mth H2-forming N5,N10- 94.4 1.8 3.9E-05 37.6 13.2 103 92-201 126-230 (343)
498 PRK07060 short chain dehydroge 94.4 0.1 2.2E-06 46.1 6.2 40 50-89 10-50 (245)
499 PLN02989 cinnamyl-alcohol dehy 94.4 0.19 4E-06 46.8 8.1 65 50-114 6-86 (325)
500 TIGR02822 adh_fam_2 zinc-bindi 94.3 0.21 4.5E-06 46.7 8.5 87 50-144 167-254 (329)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.8e-51 Score=367.04 Aligned_cols=284 Identities=45% Similarity=0.694 Sum_probs=274.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+||+|||+|.||..||.+|.++||+|++|||++++ .+.+.+.|.....++.|++..+|+||+|+|++.++++++.++.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~- 79 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN- 79 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc-
Confidence 58999999999999999999999999999999999 6666677999999999999999999999999999999998766
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
.+.+.+++++++||+||++|..++++.+.+...|..|+|+|++|+...+..|++++++||+++.+++++++|+.+|. ++
T Consensus 80 g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~ 159 (286)
T COG2084 80 GLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIV 159 (286)
T ss_pred chhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceE
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVK 287 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k 287 (351)
++|+.|.++..|+++|++...++.++.|++.++++.|++++.+.+++..+..++|.++.+.+++.+++|.|+|.++.+.|
T Consensus 160 ~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~K 239 (286)
T COG2084 160 HVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLK 239 (286)
T ss_pred EECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 288 DLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 288 d~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
|++++.+.+++.|+++|+...+.++++.+.+.|+++.|++++++.++
T Consensus 240 Dl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 240 DLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999999999999999998764
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=7.4e-50 Score=350.45 Aligned_cols=293 Identities=44% Similarity=0.729 Sum_probs=283.3
Q ss_pred CCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 46 CPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 46 ~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
++++++|||||+|.||..|+.+|.++||.|++|||+.++.+.|.+.|..+..++.|+++++|+||.|+|++.++++++.+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccCCCCCcEE-EecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhC
Q 018694 126 PSSGALSGLRPGGII-VDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG 204 (351)
Q Consensus 126 ~~~~i~~~l~~~~~i-i~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g 204 (351)
.. ++...+++++.. ||+|++.|.+++++.+.+..++..|+|+|++|+...++.|.++|+++||++.++++.++|+.+|
T Consensus 112 ~~-Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mG 190 (327)
T KOG0409|consen 112 KS-GVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMG 190 (327)
T ss_pred CC-cceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhc
Confidence 77 888888888877 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchh
Q 018694 205 K-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283 (351)
Q Consensus 205 ~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 283 (351)
+ ++++|..|.+...|+++|++...++..++|++.++++.|++...+.++++.+...|+++....|.+..++|.|+|.++
T Consensus 191 k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~ 270 (327)
T KOG0409|consen 191 KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALK 270 (327)
T ss_pred ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHH
Confidence 8 999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCC
Q 018694 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339 (351)
Q Consensus 284 ~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~ 339 (351)
+++||++.+.+.+++.+.|+|+....+++++.+++.|+++.|++.+++.+++..+.
T Consensus 271 ~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 271 LMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999988764
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.4e-45 Score=338.28 Aligned_cols=289 Identities=36% Similarity=0.608 Sum_probs=270.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
|||+|||+|.||..|+.+|.++|++|++|||++. .+.+.+.|.....++.++++++|+||+|+|.+.++++++.+.. +
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~-g 78 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGEN-G 78 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCc-c
Confidence 5899999999999999999999999999999874 5667777888888999999999999999988889999987443 5
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEE
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNY 208 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~ 208 (351)
+.+.+.++++|||++|..|..++++.+.+.++|+.|+++|++|++..++.|++.++++|+++.+++++++|+.++. ++|
T Consensus 79 ~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~ 158 (292)
T PRK15059 79 CTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITL 158 (292)
T ss_pred hhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEE
Confidence 6667788999999999999999999999998999999999999999999999999999999999999999999998 999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHH
Q 018694 209 MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD 288 (351)
Q Consensus 209 ~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 288 (351)
+|+.|.+...|+++|++...++.++.|++.++++.|++++++.+++..+.+.+++++.+.+++.+++|.++|+++.+.||
T Consensus 159 ~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KD 238 (292)
T PRK15059 159 VGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKD 238 (292)
T ss_pred eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCc
Q 018694 289 LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVR 340 (351)
Q Consensus 289 ~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 340 (351)
++++++++++.|+++|+.+.+.++++.+.+.|+++.|++++++.+++..|..
T Consensus 239 l~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~~~ 290 (292)
T PRK15059 239 LNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHK 290 (292)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999877654
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-45 Score=336.91 Aligned_cols=290 Identities=29% Similarity=0.452 Sum_probs=270.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|+||+|||+|.||..|+..|.++|++|++|||++++.+.+.+.|...+.++.+++.++|+||+|+|++.++++++.+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~- 79 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGEN- 79 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcc-
Confidence 4699999999999999999999999999999999999999888888888999999999999999988778999987544
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eE
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~ 207 (351)
++.+.+.+++++|+++++.|..++++.+.+.++++.|+++|+++++..+..|++.+++||+++.+++++++|+.+|. ++
T Consensus 80 ~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 80 GVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELI 159 (296)
T ss_pred cHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeE
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred EcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhh-hhcccCCCCCccchhhHH
Q 018694 208 YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHG-SRILKRDFEPGFFVNHFV 286 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (351)
++|+.|.+...|+++|++...+..+++|++.++++.|++++.+.+++..+..+++.+.... +++.+++|.++|+++.+.
T Consensus 160 ~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 239 (296)
T PRK15461 160 NAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAH 239 (296)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHH
Confidence 9999999999999999999999999999999999999999999999998876666666554 478899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCC
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNV 339 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~ 339 (351)
||++++.++++++|+++|+.+.+.++++.+.+.|+|+.|++++++.+++..|+
T Consensus 240 KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 240 KDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999988776
No 5
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=4.7e-43 Score=323.77 Aligned_cols=294 Identities=34% Similarity=0.606 Sum_probs=273.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|...++++++++.++|+||+|+|.+.+++.++...+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~ 80 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGEN 80 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcc
Confidence 35899999999999999999999999999999999998888888888888999999999999999988888998885322
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
++.+.+.++++|+|++++.|...+++.+.+..++++|+++|+++++.....+.+.++++|+++.++.+.++|+.++. +
T Consensus 81 -~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~ 159 (296)
T PRK11559 81 -GIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 159 (296)
T ss_pred -hHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCe
Confidence 56777889999999999999999999999988899999999999988888888889999999999999999999998 8
Q ss_pred EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHH
Q 018694 207 NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFV 286 (351)
Q Consensus 207 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
+++|+.|.+...|+++|.+......+++|++.++++.|++.+++.+.+..+...++.++...+++.+++|.++|+++...
T Consensus 160 ~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~ 239 (296)
T PRK11559 160 VHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 239 (296)
T ss_pred EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHH
Confidence 89999999999999999999999999999999999999999999999998888888898888889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCccc
Q 018694 287 KDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLD 342 (351)
Q Consensus 287 kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~ 342 (351)
||+++++++++++|+++|+++.+.+.++.+.+.|+++.|++++++++++..|++|+
T Consensus 240 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~ 295 (296)
T PRK11559 240 KDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKVEVT 295 (296)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999998888665
No 6
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=3.3e-42 Score=317.26 Aligned_cols=290 Identities=38% Similarity=0.660 Sum_probs=270.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGA 130 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i 130 (351)
||+|||+|.||..|+..|.+.|++|++|||++++.+.+.+.|....++..++++++|+||+|+|...++++++.... ++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~-~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGEN-GI 79 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcc-hH
Confidence 59999999999999999999999999999999999998888888888999999999999999988888888875322 45
Q ss_pred ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEc
Q 018694 131 LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 131 ~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
...+.++++||+++++.|...+++.+.+..++++|+++|+++++.....+.+.++++|+++.++.++++++.++. ++++
T Consensus 80 ~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~ 159 (291)
T TIGR01505 80 IEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLV 159 (291)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEe
Confidence 566788999999999999999999999988899999999999988888888899999999999999999999998 9999
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHH
Q 018694 210 GGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDL 289 (351)
Q Consensus 210 g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 289 (351)
++.|.+...|+++|.+....+.+++|++.++++.|++++++.+++..+..+++.++.+.+.+.+++|.++|+++++.||+
T Consensus 160 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl 239 (291)
T TIGR01505 160 GGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDL 239 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888899998888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcc
Q 018694 290 GICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRL 341 (351)
Q Consensus 290 ~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~ 341 (351)
.++.+++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+++.+++.|
T Consensus 240 ~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~~~ 291 (291)
T TIGR01505 240 NLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANHKV 291 (291)
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999998887654
No 7
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=4.2e-42 Score=315.80 Aligned_cols=279 Identities=30% Similarity=0.471 Sum_probs=259.5
Q ss_pred EEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccC
Q 018694 54 WIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSG 133 (351)
Q Consensus 54 iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~ 133 (351)
|||+|.||.+|+.+|.++|++|++|||++++.+.+.+.|....+++.++++++|+||+|+|++.++++++.+.. ++.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~-~l~~~ 79 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDE-GILPK 79 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcc-hHhhc
Confidence 68999999999999999999999999999999999988988888999999999999999988888999984333 77777
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEcCCc
Q 018694 134 LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGS 212 (351)
Q Consensus 134 l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~ 212 (351)
+.+++++|++++..|.+.+++.+.+.++|+.|+++|++|++..+..+++.+++||+++.+++++++|+.+|. ++++|+.
T Consensus 80 ~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~ 159 (288)
T TIGR01692 80 VAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDH 159 (288)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCC
Confidence 889999999999999999999999988999999999999999999999999999999999999999999998 9999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhh-------hcccCCCCCccchhhH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGS-------RILKRDFEPGFFVNHF 285 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~ 285 (351)
|.+...|+++|.+....+.+++|++.++++.|++++.+.+++..+.+.++....+.+ .+.+++|.++|++..+
T Consensus 160 g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 239 (288)
T TIGR01692 160 GAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALM 239 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHH
Confidence 999999999999999999999999999999999999999999998887777765543 2366899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 018694 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILAL 333 (351)
Q Consensus 286 ~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~ 333 (351)
.||++++.+++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+
T Consensus 240 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 240 LKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 999999999999999999999999999999999999999999999875
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1e-41 Score=363.61 Aligned_cols=295 Identities=25% Similarity=0.403 Sum_probs=281.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.||||||+|.||..||.+|.++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.++++++.+.. +
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~-g 83 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE-G 83 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh-h
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999997554 6
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCC--CcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKN--CSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V 206 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~--~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~ 206 (351)
+.+.+.+++++||+||..|..++++.+.+..+| +.|+|+|++|++..+..|++.+++||+++.+++++++|+.+|. +
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 777888999999999999999999999998888 8999999999999999999999999999999999999999998 6
Q ss_pred EE-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhH
Q 018694 207 NY-MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHF 285 (351)
Q Consensus 207 ~~-~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
++ +|+.|++..+|+++|++...++.+++|++.++++.|++++.+++++..+.+.++.++.+.+.+.+++|.++|+++.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~ 243 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVL 243 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHH
Confidence 65 58899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcccccc
Q 018694 286 VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLDNAV 345 (351)
Q Consensus 286 ~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ 345 (351)
.||++++++++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+++..|+.+.++-
T Consensus 244 ~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~ 303 (1378)
T PLN02858 244 VQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNILEAA 303 (1378)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999887763
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.8e-40 Score=352.56 Aligned_cols=297 Identities=28% Similarity=0.462 Sum_probs=278.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.++||||||+|+||..||.+|.+.|++|++|||++++.+.+.+.|.....++.++++++|+||+|+|.+.++++++.+..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 45899999999999999999999999999999999999999888887888999999999999999988999999986433
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhc--CCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASS--KNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK 205 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~--~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~ 205 (351)
++.+.+.+++++|++||+.|...+++.+.+.. +++.|+++|++|++..+..|++.+++||+++.+++++++|+.++.
T Consensus 403 -g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~ 481 (1378)
T PLN02858 403 -GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSE 481 (1378)
T ss_pred -hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhC
Confidence 56677889999999999999999999999987 899999999999999999999999999999999999999999998
Q ss_pred -eEE-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchh
Q 018694 206 -VNY-MGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVN 283 (351)
Q Consensus 206 -~~~-~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 283 (351)
+++ .++.|++..+|+++|++...++.+++|++.++++.|++++.+++++..+.+.++.+..+.+.+.+++|.++|+++
T Consensus 482 ~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~ 561 (1378)
T PLN02858 482 KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALD 561 (1378)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhH
Confidence 666 467999999999999999999999999999999999999999999999988899999899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcCCcccccc
Q 018694 284 HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVRLDNAV 345 (351)
Q Consensus 284 ~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ 345 (351)
.+.||++++.+++++.|+++|+.+.+.++++.+.+.|+|+.|++++++.+++..|+.+...-
T Consensus 562 l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~ 623 (1378)
T PLN02858 562 IFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLTGVKVEGRL 623 (1378)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999885543
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=2.4e-38 Score=305.59 Aligned_cols=266 Identities=22% Similarity=0.346 Sum_probs=243.0
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----CCc---ccCCHHHhhcC---CCEEEEecCCh
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----GAH---LADSPHSLASQ---SDVVFSIVGYP 116 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g~~---~~~~~~~~~~~---~DiIi~~vp~~ 116 (351)
..+++|||||+|.||..||.+|+++|++|++|||++++.+.+.+. |.. .+.+++++++. +|+||+|+|.+
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 346789999999999999999999999999999999999888764 543 67889998876 99999999999
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHH
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKL 196 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v 196 (351)
.++++++. ++.+.+.++++|||++|+.+..++++.+.+.++|++|+++|++|++.++..|+ .+++||++++++++
T Consensus 84 ~aV~~Vi~----gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v 158 (493)
T PLN02350 84 APVDQTIK----ALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNI 158 (493)
T ss_pred HHHHHHHH----HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHH
Confidence 99999998 88899999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHhhC------c-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhcCCCCchhhh
Q 018694 197 NPLFALMG------K-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNA---ISTGAAGSKSLD 265 (351)
Q Consensus 197 ~~ll~~~g------~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~---~~~~~~~s~~~~ 265 (351)
+++|+.++ . ++|+|+.|++..+|+++|.+....+++++|++.++++ .|++++++.++ ++.+.+.|+.++
T Consensus 159 ~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~lle 238 (493)
T PLN02350 159 EDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIE 238 (493)
T ss_pred HHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHH
Confidence 99999998 3 8999999999999999999999999999999999998 59999999988 557778899999
Q ss_pred hhhhhcccCC-CCCccchhhHHHHHH------HHHHHHHhcCCCCcH-HHHHHHHHHHHH
Q 018694 266 LHGSRILKRD-FEPGFFVNHFVKDLG------ICLKECQNMGLALPG-LALAQQLYLSLK 317 (351)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~gv~~p~-~~~~~~l~~~~~ 317 (351)
.+.+.+..++ +.++|.++.+.||++ ++.+.+.+.|+|+|+ .+++...+.+..
T Consensus 239 i~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~ 298 (493)
T PLN02350 239 ITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGL 298 (493)
T ss_pred HHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhcc
Confidence 8888877774 888999999999999 999999999999999 777777766654
No 11
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5e-38 Score=290.03 Aligned_cols=278 Identities=22% Similarity=0.273 Sum_probs=252.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcC---CCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ---SDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||..++.+|.+.|++|++|||++++.+.+.+.|...+.++++++++ +|+||+|+|++.++++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-- 78 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-- 78 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH--
Confidence 58999999999999999999999999999999999888888888888899998765 6999999987779999998
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.+++++|+++++.|....++.+.+.++++.|+++|++|++..+..|. .++++|+++.+++++++|+.++.
T Consensus 79 --~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~ 155 (299)
T PRK12490 79 --DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPE 155 (299)
T ss_pred --HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCc
Confidence 88888889999999999999999999999988899999999999999999987 79999999999999999999984
Q ss_pred ---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCCCc
Q 018694 206 ---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAG--LNVELFLNAISTGA-AGSKSLDLHGSRILKRDFEPG 279 (351)
Q Consensus 206 ---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 279 (351)
++|+|+.|.+...|+++|++....+.+++|++.++++.| ++++.++++++.+. ..+++++...+.+.++++ .
T Consensus 156 ~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~ 233 (299)
T PRK12490 156 GPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--L 233 (299)
T ss_pred CCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--h
Confidence 899999999999999999999999999999999999999 99999999999644 778888888887766543 2
Q ss_pred cchhhHHHHH---HHHHHHHHhcCCCCcHHHHHH-HHHHHHHHcCCCCCChHHHHHHHH
Q 018694 280 FFVNHFVKDL---GICLKECQNMGLALPGLALAQ-QLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 280 ~~~~~~~kd~---~~~~~~a~~~gv~~p~~~~~~-~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
+.++...||+ +++++.+++.|+|+|++..+. .++....+++.|..|.+++.+.+.
T Consensus 234 ~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 234 AGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 4678889998 799999999999999999995 888888888888888888876654
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=9.2e-36 Score=275.32 Aligned_cols=277 Identities=23% Similarity=0.309 Sum_probs=243.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcC---CCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ---SDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||..++.+|.+.|++|++|||++++.+.+.+.|+...++++++++. +|+||+|+|+...+++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-- 78 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-- 78 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH--
Confidence 58999999999999999999999999999999999999988899888899988875 6999999977778899988
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.+++++|+++++.+..+.++.+.+.++|+.|+|+|++|++..+..|. .+++||+++.+++++++|+.++.
T Consensus 79 --~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~ 155 (301)
T PRK09599 79 --ELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPR 155 (301)
T ss_pred --HHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHccc
Confidence 78888889999999999999999999999988999999999999999998885 89999999999999999999986
Q ss_pred ----eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCCC
Q 018694 206 ----VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK--AGLNVELFLNAISTGA-AGSKSLDLHGSRILKRDFEP 278 (351)
Q Consensus 206 ----~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 278 (351)
++++|+.|++..+|+++|.+....+.++.|++.++++ .|++++++.++++.+. ..++.++...+.+.++ +
T Consensus 156 ~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~ 232 (301)
T PRK09599 156 AEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---P 232 (301)
T ss_pred ccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---C
Confidence 7899999999999999999999999999999999999 9999999999999875 5788888887777443 2
Q ss_pred ccc-hhhHHHH---HHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 279 GFF-VNHFVKD---LGICLKECQNMGLALPGLAL-AQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 279 ~~~-~~~~~kd---~~~~~~~a~~~gv~~p~~~~-~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
.+. +....|| ++++++.+.+.|+++|++.+ ++..+....+.|.+..|.+++.+.+.
T Consensus 233 ~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 233 KLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred CHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 222 3233445 58899999999999999999 44457777788888888887766643
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=3.5e-33 Score=257.52 Aligned_cols=280 Identities=20% Similarity=0.238 Sum_probs=240.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh---cCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA---SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~---~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||..|+.+|.++|++|.+|||++++.+.+.+.|.....+++++. .++|+||+|+|.. .++++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-- 77 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-- 77 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH--
Confidence 589999999999999999999999999999999999999888877777776654 4689999999666 9999998
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.++++|||++++.+..+.++.+.+.+++++|+++|++|+..++..| ..++++|+++.++.++++|+.++.
T Consensus 78 --~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~ 154 (298)
T TIGR00872 78 --ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPE 154 (298)
T ss_pred --HHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCc
Confidence 8888899999999999999888899988888889999999999999999888 588999999999999999999984
Q ss_pred ---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhcCC-CCchhhhhhhhhcccCCCCCc
Q 018694 206 ---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKA--GLNVELFLNAISTGA-AGSKSLDLHGSRILKRDFEPG 279 (351)
Q Consensus 206 ---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 279 (351)
++|+|+.|++..+|+++|.+....+.+++|++.++++. |++++++.++++.+. ..++.++...+.+.++++.+.
T Consensus 155 ~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~ 234 (298)
T TIGR00872 155 EQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE 234 (298)
T ss_pred CCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH
Confidence 79999999999999999999999999999999999998 579999999999876 588999888887777776665
Q ss_pred cchh-hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 280 FFVN-HFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 280 ~~~~-~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
+... ...+|.++++..+.+.|+|.|.+.+ .++.+...... +.-...+++..|...|
T Consensus 235 ~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~--al~~~~~~~~~-~~~~~~~~~~~r~~fg 291 (298)
T TIGR00872 235 FSGRVSDSGEGRWTVIAAIDLGVPAPVIAT--SLQSRFASRDL-DDFANKVLAALRKEFG 291 (298)
T ss_pred HHHHHHhhccHHHHHHHHHHhCCCHHHHHH--HHHHHHHhCCC-CCcHHHHHHHHHHhhC
Confidence 5433 3456678999999999999999877 44444443322 1234567788777665
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-33 Score=266.50 Aligned_cols=257 Identities=19% Similarity=0.314 Sum_probs=222.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----C--CcccCCHHHhhc---CCCEEEEecCChhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----G--AHLADSPHSLAS---QSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~~~~~---~~DiIi~~vp~~~~~ 119 (351)
|++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+. | +..+++++++++ ++|+||+|+|++..+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 5689999999999999999999999999999999998888764 4 346788999886 489999999899999
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHH
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPL 199 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~l 199 (351)
++++. ++.+.+.++++|||++|+.+..+.+..+.+.++|++|+++|++|++.+++.|. .+++||+++++++++++
T Consensus 81 ~~vi~----~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~pi 155 (470)
T PTZ00142 81 DETID----NLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDI 155 (470)
T ss_pred HHHHH----HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 99998 89999999999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHhhCc-------eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---cCCCCchhhhhhh
Q 018694 200 FALMGK-------VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVELFLNAIS---TGAAGSKSLDLHG 268 (351)
Q Consensus 200 l~~~g~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~~---~~~~~s~~~~~~~ 268 (351)
|+.++. +.|+|+.|++..+||++|.+..+.+++++|++.+++ +.|++++++.+++. .+...|+.++.+.
T Consensus 156 L~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~ 235 (470)
T PTZ00142 156 LEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITA 235 (470)
T ss_pred HHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 999874 589999999999999999999999999999999998 79999999988884 6667788888877
Q ss_pred hhcccCCCCC-ccchhhHHH------HHHHHHHHHHhcCCCCcHHHHHH
Q 018694 269 SRILKRDFEP-GFFVNHFVK------DLGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 269 ~~~~~~~~~~-~~~~~~~~k------d~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
.-+...+-.. ++.++.+.. .-.|..+.|-+.|+|.|++....
T Consensus 236 ~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 236 KILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred HHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 7655443221 233333321 11488999999999999765543
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=9.8e-32 Score=259.67 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=219.7
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhhc---CCCEEEEecCChhHHHHH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLAS---QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~~---~~DiIi~~vp~~~~~~~v 122 (351)
+|||||+|.||.+||.+|+++|++|++|||++++.+.+.+. ++....+++++++ ++|+||+|+|++..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 48999999999999999999999999999999999888765 2556778888764 689999999888999999
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHh
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFAL 202 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~ 202 (351)
+. ++.+++.++++|||++|+.+..+.+..+.+.+++++|+++|++|++.++..|. .+++||+++++++++++|+.
T Consensus 81 i~----~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ 155 (467)
T TIGR00873 81 IN----QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQK 155 (467)
T ss_pred HH----HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHH
Confidence 98 89899999999999999999888888888888999999999999999999998 88999999999999999999
Q ss_pred hCc-e------EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hcCCCCchhhhhhhhhc
Q 018694 203 MGK-V------NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVELFLNAI---STGAAGSKSLDLHGSRI 271 (351)
Q Consensus 203 ~g~-~------~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~ 271 (351)
++. + .|+|+.|++..+||++|.+...++++++|++.+++ +.|++.+++.+++ +.+...|+.++.+.+.+
T Consensus 156 ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~ 235 (467)
T TIGR00873 156 IAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADIL 235 (467)
T ss_pred HhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHH
Confidence 886 3 79999999999999999999999999999999885 7999999999988 56667889999888877
Q ss_pred ccCCCCCccchhhHHH------HHHHHHHHHHhcCCCCcHHHHH
Q 018694 272 LKRDFEPGFFVNHFVK------DLGICLKECQNMGLALPGLALA 309 (351)
Q Consensus 272 ~~~~~~~~~~~~~~~k------d~~~~~~~a~~~gv~~p~~~~~ 309 (351)
..++-..++-++.+.. .-.|.++.|-+.|+|.|++...
T Consensus 236 ~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~a 279 (467)
T TIGR00873 236 KKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITES 279 (467)
T ss_pred hccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHH
Confidence 7655332222333221 1148899999999999976543
No 16
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.97 E-value=2.7e-30 Score=248.56 Aligned_cols=244 Identities=23% Similarity=0.335 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhhcC---CCEEEEecCChhHHHHHhhCCCCCcc
Q 018694 60 MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLASQ---SDVVFSIVGYPSDVRHVLLHPSSGAL 131 (351)
Q Consensus 60 mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~~~---~DiIi~~vp~~~~~~~v~~~~~~~i~ 131 (351)
||..||.+|+++|++|++|||++++.+.+.+. |+..+.+++++++. +|+||+|+|.+..+++++. ++.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~----~l~ 76 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE----QLL 76 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH----HHH
Confidence 89999999999999999999999999999874 47888999999874 8999999999999999998 899
Q ss_pred cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-e----
Q 018694 132 SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-V---- 206 (351)
Q Consensus 132 ~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~---- 206 (351)
+.+.++++|||++|+.+..+.+..+.+.++|++|+++|++|++.++..|. .+++||+++++++++++|+.++. +
T Consensus 77 ~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~ 155 (459)
T PRK09287 77 PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGE 155 (459)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999998 89999999999999999999987 5
Q ss_pred ---EEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hcCCCCchhhhhhhhhcccCCCCCc
Q 018694 207 ---NYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVELFLNAI---STGAAGSKSLDLHGSRILKRDFEPG 279 (351)
Q Consensus 207 ---~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~ 279 (351)
.|+|+.|++..+||++|.+....+++++|++.+++ +.|++.+++.+++ +.+...|+.++.+.+.+.++++..+
T Consensus 156 ~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~ 235 (459)
T PRK09287 156 PCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETG 235 (459)
T ss_pred CceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCC
Confidence 89999999999999999999999999999999999 5899999999988 4666789999999998888887443
Q ss_pred c-chhhHHHH------HHHHHHHHHhcCCCCcHHHH
Q 018694 280 F-FVNHFVKD------LGICLKECQNMGLALPGLAL 308 (351)
Q Consensus 280 ~-~~~~~~kd------~~~~~~~a~~~gv~~p~~~~ 308 (351)
. -++.+..- -.|..+.|-+.|+|.|++..
T Consensus 236 ~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~ 271 (459)
T PRK09287 236 KPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITE 271 (459)
T ss_pred CcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence 3 33333211 13889999999999997644
No 17
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.6e-30 Score=218.08 Aligned_cols=280 Identities=25% Similarity=0.355 Sum_probs=233.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc---CCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS---QSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~---~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|+||+||+|.||..++.+|.+.||+|++||+|++..+.+...|++..+++++.+. .+.+|.+.||..+.+.++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-- 78 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-- 78 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH--
Confidence 6899999999999999999999999999999999999999999988889888764 68999999988889999999
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
++.+.+.++.+|||-.|+....+.+..+.+.+++++|+|+..+|+..+++.|. ++++||++++++.++++|+.+..
T Consensus 79 --~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~g 155 (300)
T COG1023 79 --DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPG 155 (300)
T ss_pred --HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcC
Confidence 99999999999999999999999999999999999999999999999998886 89999999999999999998765
Q ss_pred ---eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CCCC
Q 018694 206 ---VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAG--LNVELFLNAISTGA-AGSKSLDLHGSRILKR-DFEP 278 (351)
Q Consensus 206 ---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~~ 278 (351)
+.|+|+.|+++++||++|.+..+++++++|.+.+.++.. ++.+++.++.+.+. .+||.++.+...+.+. +...
T Consensus 156 e~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q 235 (300)
T COG1023 156 EDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQ 235 (300)
T ss_pred cCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHH
Confidence 889999999999999999999999999999999988764 67788888888877 6789988776654432 2210
Q ss_pred ccchhhHHHH---HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHH-HHHHHHHhc-CCcc
Q 018694 279 GFFVNHFVKD---LGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA-LILALERLN-NVRL 341 (351)
Q Consensus 279 ~~~~~~~~kd---~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~-~~~~~~~~~-~~~~ 341 (351)
+.-...| -++.++.+-+.|+|+|++.. .++.+.+.++. ..+.. +...+|... |+.+
T Consensus 236 ---~~g~v~dSGEGrWTv~~aldlgvpaPVia~--al~~Rf~S~~~--d~f~~kvlaalR~~FGgH~v 296 (300)
T COG1023 236 ---ISGRVSDSGEGRWTVEEALDLGVPAPVIAL--ALMMRFRSRQD--DTFAGKVLAALRNEFGGHAV 296 (300)
T ss_pred ---hcCeeccCCCceeehHHHHhcCCCchHHHH--HHHHHHhccch--hhHHHHHHHHHHHHhCCccc
Confidence 0001111 24778889999999999754 45666665544 23433 555666555 4444
No 18
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.97 E-value=2.3e-29 Score=242.25 Aligned_cols=253 Identities=20% Similarity=0.166 Sum_probs=207.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-------------------cC-CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-------------------IG-AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.||..+|..|+++||+|++||+++++++.++. .| +...+++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 58999999999999999999999999999999988876653 13 45667788888999999
Q ss_pred EEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--CCc-EEeccCCCCchhh
Q 018694 110 FSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--NCS-AIDAPVSGGDRGA 177 (351)
Q Consensus 110 i~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~-~v~~pv~~~~~~~ 177 (351)
|+|+|.+. .+.+++. ++.+.+.++++||++|+..|++.+++...+.++ |.. +.+.|+.+++...
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~----~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~ 156 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAE----TIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHH----HHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence 99997664 3777777 788888899999999999999988886544332 322 3334444444444
Q ss_pred ccCce--------eEEecCCHHHHHHHHHHHHhhC-c-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018694 178 KTGTL--------AIFAGGDESVVQKLNPLFALMG-K-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNV 247 (351)
Q Consensus 178 ~~g~~--------~~~~~g~~~~~~~v~~ll~~~g-~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 247 (351)
..|.. .+++|++++..++++++++.++ . ++++++.+.+...|++.|++....+.+++|+..+|++.|++.
T Consensus 157 ~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~ 236 (411)
T TIGR03026 157 REGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDV 236 (411)
T ss_pred CCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 44443 6777889999999999999997 4 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhhcccCCCCCcc--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 248 ELFLNAISTGAAGSKSLDLHGSRILKRDFEPGF--FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 248 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+++.+.+... +++..+.+.||+ ...++.||+.++++.++++|+++|+++++.+.-+...
T Consensus 237 ~~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~ 297 (411)
T TIGR03026 237 YEVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQP 297 (411)
T ss_pred HHHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhH
Confidence 9999988654 234455667765 5677999999999999999999999999887766554
No 19
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.96 E-value=1e-29 Score=214.19 Aligned_cols=159 Identities=47% Similarity=0.768 Sum_probs=142.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
||||||||+|.||..|+++|.++|++|++|||++++.+.+.+.|+..++++.|+++++|+||+|+|++.++++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~---- 76 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLF---- 76 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHH----
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhh----
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhCc-
Q 018694 129 G--ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK- 205 (351)
Q Consensus 129 ~--i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~- 205 (351)
+ +.+.+.+++++||+++..|...+++.+.+..+|+.|+|+|++|++..+..+.+++++||+++.+++++++|+.++.
T Consensus 77 ~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 77 GENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKN 156 (163)
T ss_dssp CTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEE
T ss_pred hhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCC
Confidence 6 8888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eE-EcCC
Q 018694 206 VN-YMGG 211 (351)
Q Consensus 206 ~~-~~g~ 211 (351)
++ ++|+
T Consensus 157 v~~~~G~ 163 (163)
T PF03446_consen 157 VYHYVGP 163 (163)
T ss_dssp EEEE-ES
T ss_pred ceeeeCc
Confidence 66 4463
No 20
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.96 E-value=5.6e-28 Score=226.28 Aligned_cols=271 Identities=18% Similarity=0.197 Sum_probs=215.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------C------CcccCCHHHhhcCCCEEEEec
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------G------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------g------~~~~~~~~~~~~~~DiIi~~v 113 (351)
.+|||+|||+|.||.+++..|+++|++|++|+|++++.+.+... | +...+++++++.++|+||+|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 35899999999999999999999999999999998887777653 3 345667888888999999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCC-ChhH--HHHHHHHHhc---CCCcEEeccCCCCchhhccCceeEEec
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSL--ASELSAAASS---KNCSAIDAPVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~--~~~l~~~~~~---~~~~~v~~pv~~~~~~~~~g~~~~~~~ 187 (351)
++.++++++. .+ .++.++|+++++ .+.. .+.+.+.+.+ .++.++.+|..........+...++.+
T Consensus 83 -~~~~~~~v~~----~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~ 153 (328)
T PRK14618 83 -PSKALRETLA----GL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVAS 153 (328)
T ss_pred -chHHHHHHHH----hc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEe
Confidence 6667887776 44 467799999996 3332 4566666654 567778888887776666667778889
Q ss_pred CCHHHHHHHHHHHHhhCc-eE--------EcCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 188 GDESVVQKLNPLFALMGK-VN--------YMGG---------SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~-~~--------~~g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
++++..+.++++|+..+. ++ +.+. .|.+...|+.+|.....+..++.|+..++++.|+++++
T Consensus 154 ~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~ 233 (328)
T PRK14618 154 PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEAT 233 (328)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999999999887 44 2333 48888899999999999999999999999999999999
Q ss_pred HHHHHhcC----CCCchhhhhh--hhhcccC---C-CCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 018694 250 FLNAISTG----AAGSKSLDLH--GSRILKR---D-FEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAH 319 (351)
Q Consensus 250 ~~~~~~~~----~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~ 319 (351)
++++...+ ...++....+ ...+.++ + +.++|.+....||++.+.++++++++++|+++.+++++
T Consensus 234 ~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~------ 307 (328)
T PRK14618 234 FYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA------ 307 (328)
T ss_pred hhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH------
Confidence 99987653 2345555555 3366666 3 56778888889999999999999999999999999888
Q ss_pred CCCCCChHHHHHHHH
Q 018694 320 GEGNLGTQALILALE 334 (351)
Q Consensus 320 g~~~~d~~~~~~~~~ 334 (351)
+++.+..++++.+-
T Consensus 308 -~~~~~~~~~~~~~~ 321 (328)
T PRK14618 308 -RGGWDPLAGLRSLM 321 (328)
T ss_pred -hCCCCHHHHHHHHh
Confidence 34456666665554
No 21
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.95 E-value=1.1e-26 Score=217.35 Aligned_cols=272 Identities=18% Similarity=0.170 Sum_probs=201.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------CCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||||+|||+|.||..++..|+++|++|++|+|++++.+.++.. ++....++++.+.++|+||+|+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v- 79 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV- 79 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC-
Confidence 6899999999999999999999999999999999888877765 2445667778888999999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhc-----CCCcEEeccCCCCchhhccCceeEEecC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASS-----KNCSAIDAPVSGGDRGAKTGTLAIFAGG 188 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~-----~~~~~v~~pv~~~~~~~~~g~~~~~~~g 188 (351)
++.++++++. ++.+.+.+++++|+++++.. ...+.+.+.+.+ ....++.+|..+...........++.++
T Consensus 80 ~~~~~~~v~~----~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~ 155 (325)
T PRK00094 80 PSQALREVLK----QLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIAST 155 (325)
T ss_pred CHHHHHHHHH----HHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeC
Confidence 6788999998 88888888999999986533 223233333322 1345666777765544444455666777
Q ss_pred CHHHHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 189 DESVVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 189 ~~~~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
+.+..+++.++|+..+. +.+..+. |.+...|+++|.....+..++.|++.++++.|++++++
T Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~ 235 (325)
T PRK00094 156 DEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETF 235 (325)
T ss_pred CHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 88999999999998887 5554442 56666788889998889999999999999999999999
Q ss_pred HHHHhcCC----CCchhhhhhh--hhcccCC-C-----CCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 251 LNAISTGA----AGSKSLDLHG--SRILKRD-F-----EPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 251 ~~~~~~~~----~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
.+....+. ..++....+. ..+..+. + ..+ .+.+..||++.+.++++++|+++|+.+++++++
T Consensus 236 ~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~----- 309 (325)
T PRK00094 236 LGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL----- 309 (325)
T ss_pred hcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----
Confidence 87654331 1121121121 1222211 1 112 455678999999999999999999999999987
Q ss_pred cCCCCCChHHHHHHH
Q 018694 319 HGEGNLGTQALILAL 333 (351)
Q Consensus 319 ~g~~~~d~~~~~~~~ 333 (351)
.++.+...+++.+
T Consensus 310 --~~~~~~~~~~~~~ 322 (325)
T PRK00094 310 --YEGKDPREAVEDL 322 (325)
T ss_pred --cCCCCHHHHHHHH
Confidence 3455666666554
No 22
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.94 E-value=6.5e-25 Score=210.74 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=192.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc----------------ccCCHHHhhcCCCEEEE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH----------------LADSPHSLASQSDVVFS 111 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~----------------~~~~~~~~~~~~DiIi~ 111 (351)
.+|||+|||+|.||..+|..|++ ||+|++||+++++++.++ +|.. ..++..+.+.++|++|+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 35899999999999999999887 699999999999998888 3332 23344456889999999
Q ss_pred ecCCh------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc--CCCcEEe--------ccCCCCch
Q 018694 112 IVGYP------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS--KNCSAID--------APVSGGDR 175 (351)
Q Consensus 112 ~vp~~------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~--~~~~~v~--------~pv~~~~~ 175 (351)
|||.+ .++..+....+ ++.+.+.++++||+.||..|++++++.+...+ .|..+.+ .++.++..
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~-~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a 161 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASE-TVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDK 161 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHH-HHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcc
Confidence 99877 23344433222 78888899999999999999999875443322 2444333 24444444
Q ss_pred hhccCcee-EEecCCHHHHHHHHHHHHhhCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018694 176 GAKTGTLA-IFAGGDESVVQKLNPLFALMGK--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLN 252 (351)
Q Consensus 176 ~~~~g~~~-~~~~g~~~~~~~v~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 252 (351)
........ ++.|++++..+.++++++.+.. .+++++.+.|...|+++|++....+++++|+..+|++.|++..++.+
T Consensus 162 ~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 162 KHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred cccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 33333333 4556688888899999998863 77889999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCchhhhhhhhhcccCCCCCc-cchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 253 AISTGAAGSKSLDLHGSRILKRDFEPG-FFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 253 ~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
.+... +. +. .+.|| +.-.++.||..+++..+++.|+++++++++.+.-+..
T Consensus 242 a~~~~----~~-------~~--~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 242 AAGSK----WN-------FL--PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred HhcCC----CC-------cc--cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 85433 11 11 12344 5556678999999999999999999998887776554
No 23
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.93 E-value=2.3e-24 Score=199.94 Aligned_cols=267 Identities=14% Similarity=0.076 Sum_probs=207.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
+|||+|||+|.||.++|..|+++|++|++||++++..+.. .+.| +..+.++.+++.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 3689999999999999999999999999999998766543 2334 256778888889
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAI 184 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~ 184 (351)
++|+|+.|+|...+++..+.+ .+.... ++.+++..++. +....++.+.+...+..+++.|+.+.... .++.
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~---~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lve 152 (308)
T PRK06129 82 DADYVQESAPENLELKRALFA---ELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI----PVVE 152 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHH---HHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC----ceEE
Confidence 999999999877666555441 444444 44455543333 44566788877666778888899864322 3456
Q ss_pred Eec---CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 018694 185 FAG---GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 185 ~~~---g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
+++ ++++..+.+.++++.+|+ +++++..+.+. +++++ ...++.|++.++++.|++++++.+++..+.+.
T Consensus 153 iv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~ 225 (308)
T PRK06129 153 VVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGL 225 (308)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence 665 689999999999999999 88898766665 44553 44789999999999999999999999988877
Q ss_pred chhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 018694 261 SKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILAL 333 (351)
Q Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~ 333 (351)
++.+ ..|.+..+.+.++|....+.||...+.+++++.+.+.|++.-..+.+....+...+..++..+.++.
T Consensus 226 ~~~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (308)
T PRK06129 226 RWSF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAWR 296 (308)
T ss_pred CccC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7665 5677777778788888889999999999999999999999888877777776667777888875543
No 24
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.93 E-value=3.3e-24 Score=205.90 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=190.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-CCHHHh---------------hcCCCEEEEe
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-DSPHSL---------------ASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~~~~~~---------------~~~~DiIi~~ 112 (351)
+|||+|||+|.||..+|..|+++||+|++||+++++++.++....... ..+++. .+++|+||+|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 589999999999999999999999999999999998887653322111 111111 2479999999
Q ss_pred cCCh---------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC--------------CcEEecc
Q 018694 113 VGYP---------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN--------------CSAIDAP 169 (351)
Q Consensus 113 vp~~---------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~--------------~~~v~~p 169 (351)
+|.+ ..+.+++. ++.+++.++++||+.|+..|++.+++...+.+.+ ..++.+|
T Consensus 83 vptp~~~~~~~dl~~v~~~~~----~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~P 158 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAK----SIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCP 158 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHH----HHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECC
Confidence 9876 57777887 8888899999999999999999999887765432 2356777
Q ss_pred --CCCCchhhccCceeEEecC-CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018694 170 --VSGGDRGAKTGTLAIFAGG-DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGL 245 (351)
Q Consensus 170 --v~~~~~~~~~g~~~~~~~g-~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi 245 (351)
+.++...........++|| +++..++++++++.++. ++++++.+.+...|+++|.+....+.+++|+..+|++.|+
T Consensus 159 E~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~Gi 238 (415)
T PRK11064 159 ERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGI 238 (415)
T ss_pred CccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555544444455566788 99999999999999987 7788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 246 NVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 246 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
+..++.+.+...... .++. -.+|+.-.++.||..++.+ +.+.++++++++.+.-+..
T Consensus 239 D~~~v~~~~~~~~ri---------~~l~--pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 239 NVWELIRLANRHPRV---------NILQ--PGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred CHHHHHHHhccCCCc---------ccCC--CCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 999999988654421 0111 1234444566788876543 4566677776666554433
No 25
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.93 E-value=2.5e-24 Score=199.72 Aligned_cols=256 Identities=19% Similarity=0.211 Sum_probs=189.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.|||+|||+|.||+++|..|.++||+|++|+|++. .+++++++++|+||+|+| ...+++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp-~~~~~~v~~---- 65 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVS-MKGVRPVAE---- 65 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECC-hHHHHHHHH----
Confidence 37999999999999999999999999999999853 467788889999999995 568999988
Q ss_pred CcccC-CCCCcEEEecCC-CChhHHHHHHHHHh----cCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHh
Q 018694 129 GALSG-LRPGGIIVDMTT-SEPSLASELSAAAS----SKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFAL 202 (351)
Q Consensus 129 ~i~~~-l~~~~~ii~~s~-~~~~~~~~l~~~~~----~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~ 202 (351)
++.++ +.+++++|++++ ..|.....+.+.+. ...+..+..|..........+...++++++.+..+.++++|+.
T Consensus 66 ~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~ 145 (308)
T PRK14619 66 QVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSS 145 (308)
T ss_pred HHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCC
Confidence 77653 678899999987 33333333333332 2222233444443333333346678888999999999999999
Q ss_pred hCc-eEEcCC-c----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhh
Q 018694 203 MGK-VNYMGG-S----------------GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSL 264 (351)
Q Consensus 203 ~g~-~~~~g~-~----------------g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~ 264 (351)
.+. +++.++ . |.+...|+.+|.....+..++.|++.++++.|+++++++++. +.+.+.
T Consensus 146 ~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~-- 221 (308)
T PRK14619 146 ERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLL-- 221 (308)
T ss_pred CcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhh--
Confidence 887 665555 1 223444588899999999999999999999999999888752 222211
Q ss_pred hhhhhhcccCCCCCccchhhH----------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHH
Q 018694 265 DLHGSRILKRDFEPGFFVNHF----------------VKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQA 328 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~ 328 (351)
.+.+.+..++|.+|+.+... .||++.+.++++++|+++|+.+++++++ .++.+..+
T Consensus 222 -~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~~~~ 293 (308)
T PRK14619 222 -ATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEITPQQ 293 (308)
T ss_pred -eeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCCHHH
Confidence 13345566677767665555 8899999999999999999999999988 34456666
Q ss_pred HHHHHH
Q 018694 329 LILALE 334 (351)
Q Consensus 329 ~~~~~~ 334 (351)
+++.+.
T Consensus 294 ~~~~l~ 299 (308)
T PRK14619 294 ALEELM 299 (308)
T ss_pred HHHHHH
Confidence 655543
No 26
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.93 E-value=1e-23 Score=200.28 Aligned_cols=244 Identities=16% Similarity=0.142 Sum_probs=188.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh----------------cCCcc--cCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD----------------IGAHL--ADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~----------------~g~~~--~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|.||..+|..|+. ||+|++||+++++++.+++ .+... ..+..+++.++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 589999999999999988874 9999999999999887765 22233 3346677889999999
Q ss_pred ecCCh----------hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCc
Q 018694 112 IVGYP----------SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGT 181 (351)
Q Consensus 112 ~vp~~----------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~ 181 (351)
|||.+ ..+++++. ++.. +.++++||..||..|++++++.+.+.+.++.| +|.+ ...|.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~----~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~-----l~~G~ 147 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIK----DVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEF-----LREGK 147 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHH----HHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--Cccc-----ccCCc
Confidence 99876 56778887 7776 68899999999999999999998876555444 3433 22344
Q ss_pred e--------eEEecCCHHHHHHHHHHHHh--hCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 182 L--------AIFAGGDESVVQKLNPLFAL--MGK--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 182 ~--------~~~~~g~~~~~~~v~~ll~~--~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
. .++.|++++..+++.+++.. ++. .+++++.+.|...|++.|++....+++++|+..+|++.|++..+
T Consensus 148 a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~e 227 (388)
T PRK15057 148 ALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQ 227 (388)
T ss_pred ccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 3 67778877778888888854 454 33689999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 250 FLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 250 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.+.+....... +.+++ -.+|+.-.++.||..++...+ .++++++++++.+.-+...
T Consensus 228 V~~a~~~d~ri~-------~~~l~--pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~~ 284 (388)
T PRK15057 228 IIEGVCLDPRIG-------NHYNN--PSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTRK 284 (388)
T ss_pred HHHHhcCCCCCC-------CccCC--CCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHhH
Confidence 999987654211 11111 124555667799998886655 5677888888776655443
No 27
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=7e-24 Score=192.54 Aligned_cols=259 Identities=24% Similarity=0.355 Sum_probs=217.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhh---cCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLA---SQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~---~~~DiIi~~vp~~~~~~~ 121 (351)
+.||+||+|.||..+|.++.++|+.|.+|+|+.++.+.+.++ .+..+.+++|.+ +.+.-|++.|.....++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 569999999999999999999999999999999999888765 355667888775 468888988855677899
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
++. ++.+++.+++++||-.|+....+.+..+.+.++|+.|+...++|++.++..|+ .+|.||++++.+.++++|+
T Consensus 84 ~I~----~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~ 158 (473)
T COG0362 84 VIE----QLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILT 158 (473)
T ss_pred HHH----HHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHH
Confidence 999 99999999999999999988888888888889999999999999999999998 8999999999999999999
Q ss_pred hhCc-------eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---cCCCCchhhhhhhhh
Q 018694 202 LMGK-------VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAIS---TGAAGSKSLDLHGSR 270 (351)
Q Consensus 202 ~~g~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~ 270 (351)
.+.. +.|+|+.|+++++||++|.+..+=+++++|++.+.+. .|++.+++.++.. .+...|...+.+..-
T Consensus 159 ~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~I 238 (473)
T COG0362 159 KIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADI 238 (473)
T ss_pred HHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 8752 7899999999999999999999999999999998776 8999988877755 444667777777765
Q ss_pred cccCCCCCc-cchhhHHHHH------HHHHHHHHhcCCCCcHH-HHHHHHH
Q 018694 271 ILKRDFEPG-FFVNHFVKDL------GICLKECQNMGLALPGL-ALAQQLY 313 (351)
Q Consensus 271 ~~~~~~~~~-~~~~~~~kd~------~~~~~~a~~~gv~~p~~-~~~~~l~ 313 (351)
+...|-..+ .-++.+.... +|....|-+.|+|++.+ +++...+
T Consensus 239 L~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~ 289 (473)
T COG0362 239 LRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARY 289 (473)
T ss_pred HhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555444 3455555333 38888899999999854 4444333
No 28
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.92 E-value=6.7e-24 Score=199.90 Aligned_cols=271 Identities=21% Similarity=0.244 Sum_probs=188.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----------------cCCHHHhhcCCCEEE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----------------ADSPHSLASQSDVVF 110 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~DiIi 110 (351)
|||||+|||+|.||..+|..|.++|++|++|+|++. .+.+++.|+.. .++. +.+.++|+||
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 478999999999999999999999999999999753 45555555332 2333 4567899999
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec--c---CCCCc---hhhccCce
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA--P---VSGGD---RGAKTGTL 182 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~--p---v~~~~---~~~~~g~~ 182 (351)
+|+ +..++.+++. .+.+.+.++++|++++++ ....+.+.+.++.. .++.+ + +..++ .....+.+
T Consensus 79 l~v-k~~~~~~~~~----~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l 150 (341)
T PRK08229 79 VTV-KSAATADAAA----ALAGHARPGAVVVSFQNG-VRNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGAL 150 (341)
T ss_pred EEe-cCcchHHHHH----HHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCce
Confidence 999 7777888888 888888889999999887 45556677766532 33333 1 12111 11113343
Q ss_pred eEEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q 018694 183 AIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATT--------------------MVGLVEGMVYAH 241 (351)
Q Consensus 183 ~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~--------------------~~~~~Ea~~la~ 241 (351)
.+ + +.+..+.+.++|+..+. +.+.++++...|.|++.|.+.... ..++.|++.+++
T Consensus 151 ~~--~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~ 227 (341)
T PRK08229 151 AI--E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLK 227 (341)
T ss_pred Ee--c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 33 2 23456889999998887 888999999999999999743333 377999999999
Q ss_pred HcCCCHHHHHHHHhcC-----CCCchhhhhhhhhcccCCCCCccchhhHHHHHH------------HHHHHHHhcCCCCc
Q 018694 242 KAGLNVELFLNAISTG-----AAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLG------------ICLKECQNMGLALP 304 (351)
Q Consensus 242 ~~Gi~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~gv~~p 304 (351)
+.|++++.+.++.... ...++.+....+.+.+.++.. ...+.+|+. ++++.|+++|+++|
T Consensus 228 a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P 304 (341)
T PRK08229 228 AAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAP 304 (341)
T ss_pred HcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCc
Confidence 9999876543322211 122333333334444433321 234577776 79999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC-CChHHHHHHHH
Q 018694 305 GLALAQQLYLSLKAHGEGN-LGTQALILALE 334 (351)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~-~d~~~~~~~~~ 334 (351)
..+.++++++...+.|... ....++..-++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (341)
T PRK08229 305 VNARLCALVHEAERAGARPAWSGEALLAELR 335 (341)
T ss_pred HHHHHHHHHHHHHhCCCcCCCChHHHHHHhh
Confidence 9999999999998887543 33333444333
No 29
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.91 E-value=4e-23 Score=187.94 Aligned_cols=245 Identities=18% Similarity=0.238 Sum_probs=182.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEE-eCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVF-NRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
|||+|||+|+||.+|+..|.++|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+ +++++++++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHHH
Confidence 789999999999999999999998 89999 99999988888889888889999899999999999 7899999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe-ccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhh
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID-APVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM 203 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~-~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~ 203 (351)
++.+.+.++++||++.++.+ ...+.+.+.. . .+++ .|+.+...+.....++...+.+++.++.++++|+.+
T Consensus 80 ----~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~ 151 (266)
T PLN02688 80 ----ELRPLLSKDKLLVSVAAGIT--LADLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAV 151 (266)
T ss_pred ----HHHhhcCCCCEEEEecCCCc--HHHHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 88777888999998877643 3355554432 2 6775 477766655422222222233788999999999999
Q ss_pred CceEEcCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhh----hhh
Q 018694 204 GKVNYMGG---------SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLH----GSR 270 (351)
Q Consensus 204 g~~~~~g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~----~~~ 270 (351)
|.++++++ .|++.+ +...++..+.| .+++.|++++++.+++..+..++..+... ...
T Consensus 152 G~~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~e---a~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~ 221 (266)
T PLN02688 152 GKIWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALAD---GGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQ 221 (266)
T ss_pred CCEEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 99666643 344444 22333444444 48899999999999998887666553211 122
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 271 ILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 271 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
+.+.-..||.+.. ..++..++.|++..+.+++.+.++++.+.+
T Consensus 222 l~~~v~spgG~t~-------~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 222 LKDMVTSPGGTTI-------AGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHhCCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 2344445665553 366888899999999999999999998764
No 30
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.91 E-value=2.7e-23 Score=188.23 Aligned_cols=271 Identities=18% Similarity=0.200 Sum_probs=208.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------CCcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||||+|||+|+||+++|..|+++||+|.+|.|+++..+++.+. ++..++|+.++++++|+|++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av- 79 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV- 79 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC-
Confidence 4899999999999999999999999999999999888777664 2566889999999999999999
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh-----HHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS-----LASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGD 189 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~-----~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~ 189 (351)
+.+.+++++. ++.+.+.++..++++++|... .++.+.+.++...+.++.+|++..+......+.+.+.+.|
T Consensus 80 Ps~~~r~v~~----~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d 155 (329)
T COG0240 80 PSQALREVLR----QLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASND 155 (329)
T ss_pred ChHHHHHHHH----HHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCC
Confidence 8999999999 888888999999999996432 2344445555445788999999999888887877778889
Q ss_pred HHHHHHHHHHHHhhCceEEc-CCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018694 190 ESVVQKLNPLFALMGKVNYM-GGS-----------------GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFL 251 (351)
Q Consensus 190 ~~~~~~v~~ll~~~g~~~~~-g~~-----------------g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 251 (351)
.+..+.++.+|+.-.+.+|+ .|. |....+.+..|.-.+....+++|+..++.+.|-.++++.
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~ 235 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFM 235 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhc
Confidence 99999999999985553333 332 777778888999999999999999999999999988777
Q ss_pred HHHhcCCCCchhhhhhhhhcccCCCC----Ccc----------chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 252 NAISTGAAGSKSLDLHGSRILKRDFE----PGF----------FVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 252 ~~~~~~~~~s~~~~~~~~~~~~~~~~----~~~----------~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
.+-..++. ...+++++..|+.|. .|. .+-+..+....+.++++++++++|+++.+|+++..
T Consensus 236 gLsGlGDL---ilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~-- 310 (329)
T COG0240 236 GLSGLGDL---ILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYE-- 310 (329)
T ss_pred ccccccce---eEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC--
Confidence 66554432 333333322222211 121 12233555578999999999999999999999853
Q ss_pred HcCCCCCChHHHHHHHH
Q 018694 318 AHGEGNLGTQALILALE 334 (351)
Q Consensus 318 ~~g~~~~d~~~~~~~~~ 334 (351)
..+...+++.+.
T Consensus 311 -----~~~~~~~~~~L~ 322 (329)
T COG0240 311 -----GLDPKEAIEELM 322 (329)
T ss_pred -----CCCHHHHHHHHh
Confidence 345555555443
No 31
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.90 E-value=2.2e-22 Score=179.16 Aligned_cols=251 Identities=22% Similarity=0.262 Sum_probs=192.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
||||+|||+|+||.+|+..|.++| .+|++.+|++++.+.+.++ |+..+++..+++.++|+||+|| ||+++++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH
Confidence 589999999999999999999999 5899999999988755544 6666777888999999999999 999999999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLF 200 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll 200 (351)
. ++.+ ..++++||++..+.+ .+.+...+. +..++++ |+.....+. |...+..+. +++..+.+..+|
T Consensus 80 ~----~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt~a~vg~--g~t~i~~~~~~~~~~~~~v~~l~ 148 (266)
T COG0345 80 S----KLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNTPALVGA--GVTAISANANVSEEDKAFVEALL 148 (266)
T ss_pred H----Hhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCChHHHHcC--cceeeecCccCCHHHHHHHHHHH
Confidence 9 8887 788999999998865 457777776 6788887 888776664 544444433 778888999999
Q ss_pred HhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCch-hhhhhhh---hcccCC
Q 018694 201 ALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSK-SLDLHGS---RILKRD 275 (351)
Q Consensus 201 ~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~~---~~~~~~ 275 (351)
+.+|.++++.+.-...+..+.... -.++..+.|++. .+.+.|++++++.+++.....|+. ++..... .+.++-
T Consensus 149 ~~~G~v~~v~E~~~da~TaisGSg--PAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~V 226 (266)
T COG0345 149 SAVGKVVEVEESLMDAVTALSGSG--PAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQV 226 (266)
T ss_pred HhcCCeEEechHHhhHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 999998888753222221111111 127788889988 799999999999999888875433 3333322 334455
Q ss_pred CCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 276 FEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 276 ~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
.+||.+... .++..++.|+..-+.+++.+..+++.+.|
T Consensus 227 tSPGGtTia-------gl~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 227 TSPGGTTIA-------GLRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred cCCCchHHH-------HHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 667776643 45667789999999999999998888765
No 32
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.90 E-value=2.4e-22 Score=183.96 Aligned_cols=242 Identities=20% Similarity=0.277 Sum_probs=181.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCcc-cchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTLS-KAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~~-~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|||+|||+|+||.+|+..|.++| ++|++++|+++ +.+.+... |+....++.++++++|+||+|| +++++.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav-~p~~~~~vl 82 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAM-KPKDVAEAL 82 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEe-CHHHHHHHH
Confidence 69999999999999999999988 78999999764 56666554 7877888888889999999999 888899999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC---CHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPL 199 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~l 199 (351)
. ++.+.+.++++||++.++.. .+.+.+.+. .+..++.+ |+...... +.+.+++++ +++.++.++++
T Consensus 83 ~----~l~~~~~~~~liIs~~aGi~--~~~l~~~~~-~~~~v~r~mPn~~~~~~---~~~t~~~~~~~~~~~~~~~v~~l 152 (279)
T PRK07679 83 I----PFKEYIHNNQLIISLLAGVS--THSIRNLLQ-KDVPIIRAMPNTSAAIL---KSATAISPSKHATAEHIQTAKAL 152 (279)
T ss_pred H----HHHhhcCCCCEEEEECCCCC--HHHHHHHcC-CCCeEEEECCCHHHHHh---cccEEEeeCCCCCHHHHHHHHHH
Confidence 8 88877888899999855533 234444443 34456655 55433222 334566565 46788999999
Q ss_pred HHhhCceEEcC---------CccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCc-hhhh--h
Q 018694 200 FALMGKVNYMG---------GSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGS-KSLD--L 266 (351)
Q Consensus 200 l~~~g~~~~~g---------~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s-~~~~--~ 266 (351)
|+.+|.++++. ..|++.. +...+.|++. .+++.|++.+++.+++.....++ .++. .
T Consensus 153 ~~~~G~~~~v~e~~~~~~~a~~Gsgpa-----------~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~ 221 (279)
T PRK07679 153 FETIGLVSVVEEEDMHAVTALSGSGPA-----------YIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASE 221 (279)
T ss_pred HHhCCcEEEeCHHHhhhHHHhhcCHHH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999955543 3344444 5666777777 89999999999999998876554 4443 3
Q ss_pred hhhhcccCCC-CCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 267 HGSRILKRDF-EPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
..+..+.+++ .||+++.. .++..++.|+..-+.+++.+..+++.+.+
T Consensus 222 ~~~~~l~~~v~spgg~t~~-------gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 222 KHPSILRKEITSPGGTTEA-------GIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred CCHHHHHHhcCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 4556666667 78887654 55778889999999999999999888765
No 33
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.89 E-value=7.1e-22 Score=179.43 Aligned_cols=250 Identities=15% Similarity=0.199 Sum_probs=186.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchhHHh-cCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLD-IGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||+|||+|+||.+|+..|.++|+ +|++++|++++++.+.+ .|+..+.+..+++.++|+||+|+ +|+++++++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLav-kP~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSI-KPDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEe-ChHHHHHHHH
Confidence 689999999999999999999885 69999999998888765 57777778888889999999999 7899999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFA 201 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~ 201 (351)
++.+.+.++++||++..+.+ .+.+.+.+. ....+++. |+.+...+ .|...+..+. +++..+.++.+|+
T Consensus 82 ----~l~~~~~~~~lvISi~AGi~--i~~l~~~l~-~~~~vvR~MPN~~~~vg--~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 82 ----QIKDQIKNDVIVVTIAAGKS--IKSTENEFD-RKLKVIRVMPNTPVLVG--EGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred ----HHHHhhcCCcEEEEeCCCCc--HHHHHHhcC-CCCcEEEECCChHHHHc--CceEEEEeCCCCCHHHHHHHHHHHH
Confidence 88887888899999999865 457777664 23457766 88766554 3544444433 6677889999999
Q ss_pred hhCceEEcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhh-hh---hhhhcccC
Q 018694 202 LMGKVNYMGGS--GKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSL-DL---HGSRILKR 274 (351)
Q Consensus 202 ~~g~~~~~g~~--g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~-~~---~~~~~~~~ 274 (351)
.+|.++++.+. ....+ + ....-.++..+.|++. .+.+.|++.++..+++.+...|+..+ .. +...+.+.
T Consensus 153 ~~G~~~~~~E~~~d~~ta--l--sgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~ 228 (272)
T PRK12491 153 IFGQTEVVNEKLMDVVTS--I--SGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDM 228 (272)
T ss_pred cCCCEEEEcHHHhhhHHH--h--ccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 99997776542 11111 1 1111126677777777 89999999999999988877554332 11 12234455
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 275 DFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 275 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
-.+||.+... .++..++.|+..-+.+++.+..+++.+.+
T Consensus 229 V~sPGGtT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 229 VCSPGGTTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred CCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 5667776643 56788889999999999999988887653
No 34
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=1.2e-20 Score=173.34 Aligned_cols=255 Identities=21% Similarity=0.174 Sum_probs=200.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------------------C-CcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------------------G-AHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.+|...+..|++.||+|+.+|.++++++.++.. | +.++++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 799999999999999999999999999999999998776542 2 66788999999999999
Q ss_pred EEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC----CcEEeccCCCCch-
Q 018694 110 FSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN----CSAIDAPVSGGDR- 175 (351)
Q Consensus 110 i~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~----~~~v~~pv~~~~~- 175 (351)
|+|||.|+ .++++++ .+.+.+...++||.-||..+++.+.+.+.+.... ..++..|-+-.+-
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~----~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~ 156 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAK----DIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGS 156 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHH----HHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcc
Confidence 99998664 3677777 8888888889999999999999999988776432 3466666553221
Q ss_pred --hhccCceeEEecC-CHHHHHHHHHHHHhh---CceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 176 --GAKTGTLAIFAGG-DESVVQKLNPLFALM---GKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 176 --~~~~g~~~~~~~g-~~~~~~~v~~ll~~~---g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.....+--+++|. ++.+.+.+++++..+ ...+...+...+.+.|++.|.+.+.-+.+++|...+|++.|++..+
T Consensus 157 Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~ 236 (414)
T COG1004 157 AVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQ 236 (414)
T ss_pred hhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 1111111244555 445677888888765 2366777889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 250 FLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 250 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.+.+..... -+.++++-. .||.-.+++||...++..++++|.+..+++++.+.-++-.
T Consensus 237 V~~gIGlD~R-------IG~~fl~aG--~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 237 VAEGIGLDPR-------IGNHFLNAG--FGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred HHHHcCCCch-------hhHhhCCCC--CCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9988765542 123344322 4556677899999999999999999999999887665544
No 35
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=6.4e-21 Score=179.05 Aligned_cols=271 Identities=17% Similarity=0.139 Sum_probs=194.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC---------------CcccCCHHHhhcCCCEEEEe
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG---------------AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g---------------~~~~~~~~~~~~~~DiIi~~ 112 (351)
.||||+|||+|+||+++|..|+++| +|++|.|+++..+.+++.+ +...++.++.+.++|+||+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 4689999999999999999999998 6888999988877776542 23455777778899999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH-----HHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEec
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL-----ASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~-----~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~ 187 (351)
+ |++.++++++ ++.+.+.+++++|++++|.... ++.+.+.++...+.++..|.+.............+.+
T Consensus 85 v-ps~~~~~vl~----~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~ 159 (341)
T PRK12439 85 V-PSHGFRGVLT----ELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAM 159 (341)
T ss_pred e-CHHHHHHHHH----HHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEe
Confidence 9 8999999999 8998888888999999985531 3455555543334466778777665544433445556
Q ss_pred CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCCCHHH
Q 018694 188 GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIA-----------------TTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~-----------------~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.+++..+.++++|+.-+. ++...|.-...|-|.+.|.+.. .+..++.|+..++++.|.++++
T Consensus 160 ~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t 239 (341)
T PRK12439 160 PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPET 239 (341)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 677888899999988777 5555667666666766666655 3678899999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhhcccCCC----CCccchhh----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018694 250 FLNAISTGAAGSKSLDLHGSRILKRDF----EPGFFVNH----------FVKDLGICLKECQNMGLALPGLALAQQLYLS 315 (351)
Q Consensus 250 ~~~~~~~~~~~s~~~~~~~~~~~~~~~----~~~~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~ 315 (351)
++.+...++. ...++++...|+.+ ..|.+++. .......+.++++++++++|+++++|+++.
T Consensus 240 ~~gl~G~GDl---~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~- 315 (341)
T PRK12439 240 FAGLAGMGDL---IVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN- 315 (341)
T ss_pred ccccchhhhh---hhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-
Confidence 8876555543 22222221111111 12222222 234446889999999999999999999983
Q ss_pred HHHcCCCCCChHHHHHHHH
Q 018694 316 LKAHGEGNLGTQALILALE 334 (351)
Q Consensus 316 ~~~~g~~~~d~~~~~~~~~ 334 (351)
++.+..++++.+-
T Consensus 316 ------~~~~~~~~~~~l~ 328 (341)
T PRK12439 316 ------HGSTVEQAYRGLI 328 (341)
T ss_pred ------CCCCHHHHHHHHh
Confidence 4456666655544
No 36
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=7.8e-21 Score=170.15 Aligned_cols=259 Identities=21% Similarity=0.318 Sum_probs=210.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc---C--CcccCCHHHhh---cCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI---G--AHLADSPHSLA---SQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~---g--~~~~~~~~~~~---~~~DiIi~~vp~~~~~~~ 121 (351)
+.||+||++.||..++.++++.|+.|.+|+|+..+++.+.++ | +....++++.+ +.+..|++-+.....++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 679999999999999999999999999999999999887665 3 34456888876 468889988867888999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
.++ ++.+++.++.+|||-.|+....+.+..+.+..+|+.|+.+.++|++.+++.|+ .++.||++++...++.+|+
T Consensus 87 ~I~----~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 87 FIE----ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred HHH----HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHH
Confidence 999 99999999999999999888888888888888999999999999999999998 8889999999999999998
Q ss_pred hhC------c--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhcCC---CCchhhhhhhh
Q 018694 202 LMG------K--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAISTGA---AGSKSLDLHGS 269 (351)
Q Consensus 202 ~~g------~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~~~~---~~s~~~~~~~~ 269 (351)
.+. . +.|+|+-|++.++||++|.+..+=++++.|++.+.++ .|++-+++.++..... .-|+..+.+.+
T Consensus 162 ~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~d 241 (487)
T KOG2653|consen 162 KIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITAD 241 (487)
T ss_pred HHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHH
Confidence 763 2 7899999999999999999999999999999999888 8999998888876554 44666665554
Q ss_pred hcccCCCCCcc-chhhHHHHH------HHHHHHHHhcCCCCcHH-HHHHHHHH
Q 018694 270 RILKRDFEPGF-FVNHFVKDL------GICLKECQNMGLALPGL-ALAQQLYL 314 (351)
Q Consensus 270 ~~~~~~~~~~~-~~~~~~kd~------~~~~~~a~~~gv~~p~~-~~~~~l~~ 314 (351)
-+.-.+- .|. -++.+..-. .+....+-++|+|.|++ +++.....
T Consensus 242 Ilk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRcl 293 (487)
T KOG2653|consen 242 ILKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCL 293 (487)
T ss_pred Hhheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3222222 222 344433222 37788888999998854 44444333
No 37
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.86 E-value=1.2e-19 Score=175.87 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=190.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhcC-------------------CcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDIG-------------------AHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~g-------------------~~~~~~~~~~~~~~D 107 (351)
||||+|||+|.+|..+|..|++.| ++|++||+++++++.++..+ +..+++.++.+.++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 689999999999999999999884 78999999999887754431 345566777889999
Q ss_pred EEEEecCChh--------------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--C--CcEEecc
Q 018694 108 VVFSIVGYPS--------------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--N--CSAIDAP 169 (351)
Q Consensus 108 iIi~~vp~~~--------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~--~~~v~~p 169 (351)
++|+|||.|. .+++++. .+.+.+.++++||.-|+..+++.+++.+.+.+. + ..+..+|
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~----~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~P 156 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAAR----MIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNP 156 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHH----HHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECC
Confidence 9999997543 5677887 888889999999999999999999988877642 3 3455667
Q ss_pred CCCCc---hhhccCceeEEecC-C----HHHHHHHHHHHHhhCc--eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 170 VSGGD---RGAKTGTLAIFAGG-D----ESVVQKLNPLFALMGK--VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVY 239 (351)
Q Consensus 170 v~~~~---~~~~~g~~~~~~~g-~----~~~~~~v~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l 239 (351)
-+-.+ .......--+++|+ + ++..+.++++++.+-. .+.+.+...|...|++.|.+....+++++|...+
T Consensus 157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~l 236 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (473)
T ss_pred CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55322 22112222344465 3 3457788888887753 6667889999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCC--CcHHHHHHH
Q 018694 240 AHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLA--LPGLALAQQ 311 (351)
Q Consensus 240 a~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~ 311 (351)
|++.|++..++.+.+....... ..+++ -.+|+.-.++.||..++...+++.|++ +++.+++.+
T Consensus 237 ce~~giD~~eV~~~~~~d~rig-------~~~l~--PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~ 301 (473)
T PLN02353 237 CEATGADVSQVSHAVGKDSRIG-------PKFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (473)
T ss_pred HHHhCCCHHHHHHHhCCCCcCC-------CCCCC--CCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 9999999999998887654211 11221 123445567799999999999999998 667666553
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.86 E-value=3.7e-20 Score=181.89 Aligned_cols=199 Identities=17% Similarity=0.157 Sum_probs=154.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-------------------cC-CcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-------------------IG-AHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~D 107 (351)
+.|||+|||+|.||.+||..|+++|++|++||+++++.+.+.+ .| +..++++++++++||
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 3479999999999999999999999999999999887655421 12 567788989999999
Q ss_pred EEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEec
Q 018694 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 108 iIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~ 187 (351)
+||.|+|+..++++.+.. ++.+.+.++.+ |..+++.+.. ..+.+.+..++..++..|+.+... +.++.+++
T Consensus 83 ~Vieavpe~~~vk~~l~~---~l~~~~~~~~i-I~SsTsgi~~-s~l~~~~~~~~r~~~~hP~nP~~~----~~Lvevv~ 153 (495)
T PRK07531 83 WIQESVPERLDLKRRVLA---EIDAAARPDAL-IGSSTSGFLP-SDLQEGMTHPERLFVAHPYNPVYL----LPLVELVG 153 (495)
T ss_pred EEEEcCcCCHHHHHHHHH---HHHhhCCCCcE-EEEcCCCCCH-HHHHhhcCCcceEEEEecCCCccc----CceEEEcC
Confidence 999999888877775542 56555666655 4455544443 366777766777888888775532 45677787
Q ss_pred CC---HHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhcCCCCch
Q 018694 188 GD---ESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVG-LVEGMVYAHKAGLNVELFLNAISTGAAGSK 262 (351)
Q Consensus 188 g~---~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~-~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~ 262 (351)
|+ ++..+.+.++++.+|+ +++++ |.+.|.+.+-+... +.|++.++++.|++++++.+++..+.+.++
T Consensus 154 g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 154 GGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 74 7999999999999999 77776 35566666666666 599999999999999999999998876554
Q ss_pred h
Q 018694 263 S 263 (351)
Q Consensus 263 ~ 263 (351)
.
T Consensus 226 ~ 226 (495)
T PRK07531 226 A 226 (495)
T ss_pred c
Confidence 4
No 39
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.86 E-value=2.7e-20 Score=169.42 Aligned_cols=252 Identities=20% Similarity=0.236 Sum_probs=178.5
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC---CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG---YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g---~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|||||+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+. |+....+.++.+.++|+||+|+ +++++++++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v-~~~~~~~v~ 79 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAV-KPQVMEEVL 79 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEc-CHHHHHHHH
Confidence 4789999999999999999999998 7899999999888888775 7777788888889999999999 888899999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLF 200 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll 200 (351)
. ++.+.+ +++||+++++.+ .+.+.+.++ .+..+++. |..+.. ...+...++.+. +++..+.++.+|
T Consensus 80 ~----~l~~~~--~~~vvs~~~gi~--~~~l~~~~~-~~~~iv~~~P~~p~~--~~~~~~~i~~~~~~~~~~~~~v~~l~ 148 (267)
T PRK11880 80 S----ELKGQL--DKLVVSIAAGVT--LARLERLLG-ADLPVVRAMPNTPAL--VGAGMTALTANALVSAEDRELVENLL 148 (267)
T ss_pred H----HHHhhc--CCEEEEecCCCC--HHHHHHhcC-CCCcEEEecCCchHH--HcCceEEEecCCCCCHHHHHHHHHHH
Confidence 8 777765 578999998865 345665553 35566665 544332 223333344443 788899999999
Q ss_pred HhhCceEEcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchh-hhh---hhhhcccC
Q 018694 201 ALMGKVNYMGGSG-KGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKS-LDL---HGSRILKR 274 (351)
Q Consensus 201 ~~~g~~~~~g~~g-~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~-~~~---~~~~~~~~ 274 (351)
+.+|..+++.+.. .-...-+..+.. .+...+.|++. .+.+.|+++++..+++.....++.. +.. ......+.
T Consensus 149 ~~lG~~~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 226 (267)
T PRK11880 149 SAFGKVVWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDN 226 (267)
T ss_pred HhCCeEEEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 9999966666321 111111222211 23445566666 7888999999999888776543222 211 11112223
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 275 DFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 275 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
-..||.+.. ..++..++.|++..+.+++.+.++++++.+
T Consensus 227 v~tpgG~t~-------~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 227 VTSPGGTTI-------AALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred CCCCcHHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 334555443 466888999999999999999999998764
No 40
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.86 E-value=3.6e-20 Score=173.41 Aligned_cols=257 Identities=11% Similarity=0.122 Sum_probs=173.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC--------------CcccCCHHHhh-cCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG--------------AHLADSPHSLA-SQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~-~~~DiIi~~vp 114 (351)
|||+|||+|+||++++..|.++|++|++|+|+++.++.+++.+ +...++.++.+ .++|+||+||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav- 79 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV- 79 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe-
Confidence 6899999999999999999999999999999988777776531 12345566665 5899999999
Q ss_pred ChhHHHHHhhCCCCCccc-CCCCCcEEEecCCCChhH-----HHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecC
Q 018694 115 YPSDVRHVLLHPSSGALS-GLRPGGIIVDMTTSEPSL-----ASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGG 188 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~-~l~~~~~ii~~s~~~~~~-----~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g 188 (351)
|++++++++. ++.+ .+.+++.++.+++|.... .+.+.+.++...+.++.+|.+.............+.+.
T Consensus 80 ks~~~~~~l~----~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 80 PTQQLRTICQ----QLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred CHHHHHHHHH----HHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecC
Confidence 9999999999 8887 787888888899885321 34555555544444555666443333222222344455
Q ss_pred CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHH
Q 018694 189 DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT-----------------TMVGLVEGMVYAHKAGL--NVE 248 (351)
Q Consensus 189 ~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~-----------------~~~~~~Ea~~la~~~Gi--~~~ 248 (351)
+.+..+.+.++|+.-+. +....++-...|.|++.|.+... +..++.|+..++++.|. +++
T Consensus 156 ~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~ 235 (326)
T PRK14620 156 NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLN 235 (326)
T ss_pred CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 66555667777766665 66666788888999998887554 56788899999999987 777
Q ss_pred HHH------HHHhcCC-CCchhhhhhhh-----hcccCCCC-CccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018694 249 LFL------NAISTGA-AGSKSLDLHGS-----RILKRDFE-PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLY 313 (351)
Q Consensus 249 ~~~------~~~~~~~-~~s~~~~~~~~-----~~~~~~~~-~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~ 313 (351)
+++ +.+..-. ..+... .++. .+.+.... ....++. ..-.+.+.++++++|+++|+++.+++++
T Consensus 236 ~~~gl~g~gdl~~t~~~~~~rN~-~~G~~l~~g~~~~d~~~~~~~~veg-i~~~~~v~~~a~~~~i~~P~~~~l~~~~ 311 (326)
T PRK14620 236 TLIGPSCLGDLILTCTTLHSRNM-SFGFKIGNGFNINQILSEGKSVIEG-FSTVKPLISLAKKLNIELPICESIYNLL 311 (326)
T ss_pred hhhccchhhhhhheecCCCCCcH-HHHHHHHCCCCHHHHHHhCCCEeec-HHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 775 3331111 011000 0000 01100000 0112332 3445689999999999999999999987
No 41
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.85 E-value=1.1e-19 Score=168.51 Aligned_cols=254 Identities=18% Similarity=0.190 Sum_probs=171.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------------cCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------------ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------------~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+++.|+.. .++.++...++|+||+|+ +.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav-k~ 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV-KA 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe-cc
Confidence 6899999999999999999999999999999 77777777655322 334556567899999999 88
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCC-CchhhccCceeEEecC---
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSG-GDRGAKTGTLAIFAGG--- 188 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~-~~~~~~~g~~~~~~~g--- 188 (351)
.++++++. .+.+.+.++++||.++|+ .+..+.+.+.++.. ++.+..+...+ +..... +.-.+..|.
T Consensus 79 ~~~~~~~~----~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~-~~~~~~iG~~~~ 152 (305)
T PRK12921 79 YQLDAAIP----DLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQR-ADHRLTFGEIPG 152 (305)
T ss_pred cCHHHHHH----HHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEc-CCCcEEEcCCCC
Confidence 88999998 888888888899999998 44556677766543 23334443332 222211 111233332
Q ss_pred -CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCC
Q 018694 189 -DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAGL 245 (351)
Q Consensus 189 -~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~Gi 245 (351)
..+..+.+.++|...+. +....+.-...|.|++.|...+. +..++.|+..++++.|+
T Consensus 153 ~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~ 232 (305)
T PRK12921 153 QRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGA 232 (305)
T ss_pred CcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCC
Confidence 23455667777877776 56667789999999999976543 45668899999999998
Q ss_pred CHH--HHHHHHhcCC-CCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 246 NVE--LFLNAISTGA-AGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 246 ~~~--~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.. ...+.+.... ..........+.+.++... +++.+. ++++++++++|+++|.++.++++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~t---Eid~i~---G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 233 PLRDDVVEEIVKIFAGAPGDMKTSMLRDMEKGRPL---EIDHLQ---GVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred CCChhHHHHHHHHHhccCCCCCcHHHHHHHcCCcc---cHHHHH---HHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 753 3333322110 0000001111122222221 344333 7899999999999999999999997764
No 42
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.85 E-value=1.4e-19 Score=168.43 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=170.0
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--------------cCCHHHhhcCCCEEEEe
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--------------ADSPHSLASQSDVVFSI 112 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--------------~~~~~~~~~~~DiIi~~ 112 (351)
+..|||+|||+|.||+.+|..|.++|++|+++.|++ .+.+...|+.. .++. +....+|+||+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 445899999999999999999999999999999985 34455544322 1122 235678999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEeccCCC-Cchh-hccCceeEE-
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDAPVSG-GDRG-AKTGTLAIF- 185 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~pv~~-~~~~-~~~g~~~~~- 185 (351)
| |..++.+++. .+.+.+.+++.|+.+.|+ .+..+.+.+.++.. ++.++.+...+ +.+. ...+.+.+-
T Consensus 80 v-K~~~~~~~~~----~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~ 153 (313)
T PRK06249 80 L-KTTANALLAP----LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGY 153 (313)
T ss_pred e-cCCChHhHHH----HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEec
Confidence 9 8888888888 788888888999999998 55667777777543 22333332222 1111 112332221
Q ss_pred ecC-C-----HHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Q 018694 186 AGG-D-----ESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGM 237 (351)
Q Consensus 186 ~~g-~-----~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~ 237 (351)
..+ + .+..+.+.++|+..|. +....++....|.|++.|...+. +..++.|+.
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~ 233 (313)
T PRK06249 154 HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI 233 (313)
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence 122 2 3555677888888887 77778899999999998876543 556688999
Q ss_pred HHHHHcCCCHH--HHHHHHhcCCCCchhhhhhhhhcccCCCCCcc--chhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018694 238 VYAHKAGLNVE--LFLNAISTGAAGSKSLDLHGSRILKRDFEPGF--FVNHFVKDLGICLKECQNMGLALPGLALAQQLY 313 (351)
Q Consensus 238 ~la~~~Gi~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~ 313 (351)
.++++.|++.+ ...+.+....... .+.+.|.+ |+..|. +++.+. ++++++++++|+++|+++.++.++
T Consensus 234 ~va~a~Gi~~~~~~~~~~~~~~~~~~----~~~sSM~q-D~~~gr~tEid~i~---G~vv~~a~~~Gi~~P~~~~l~~~l 305 (313)
T PRK06249 234 QGAAACGHTLPEGYADHMLAVTERMP----DYRPSMYH-DFEEGRPLELEAIY---ANPLAAARAAGCAMPRVEMLYQAL 305 (313)
T ss_pred HHHHhcCCCCChhHHHHHHHHhhcCC----CCCChHHH-HHHCCCcccHHHHh---hHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99999998742 2222222111000 01111111 222222 344443 899999999999999999999998
Q ss_pred HHHHH
Q 018694 314 LSLKA 318 (351)
Q Consensus 314 ~~~~~ 318 (351)
+....
T Consensus 306 ~~~e~ 310 (313)
T PRK06249 306 EFLDR 310 (313)
T ss_pred HHHHh
Confidence 87654
No 43
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.85 E-value=1.6e-19 Score=168.37 Aligned_cols=196 Identities=16% Similarity=0.185 Sum_probs=159.7
Q ss_pred CeEEEEccChh--------------------hHHHHHHHHHCCCeEEEEeCCcc-----cchhHHhcCCcccCCHHHhhc
Q 018694 50 TRIGWIGTGVM--------------------GRSMCAHLLNAGYTVTVFNRTLS-----KAQPLLDIGAHLADSPHSLAS 104 (351)
Q Consensus 50 ~kI~iIG~G~m--------------------G~~ia~~L~~~g~~V~~~dr~~~-----~~~~~~~~g~~~~~~~~~~~~ 104 (351)
|||.|.|+|+. |..||..|+++||+|++|||+++ +.+.+.+.|+...++..+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 68999999987 88999999999999999999987 445566678888889989899
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHH-HHHHHHHhc----CCCcEE-eccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLA-SELSAAASS----KNCSAI-DAPVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~-~~l~~~~~~----~~~~~v-~~pv~~~~~~~~ 178 (351)
++|+||+|+|.+..+++++. ++.+.+.++++|+|++++.+... +.+.+.+.. .++.+. ++++.+++
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl~----~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae---- 152 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIAK----NILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP---- 152 (342)
T ss_pred CCCEEEEECCCcHHHHHHHH----HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccc----
Confidence 99999999976666999998 88888889999999999988876 566666642 233333 22333332
Q ss_pred cCceeEEecC--------CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 179 TGTLAIFAGG--------DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 179 ~g~~~~~~~g--------~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.+...++.++ +++.+++++++|+.+|. +++++ .|.+...|+++|++...+..+..|++.++++.|.++..
T Consensus 153 ~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~ 231 (342)
T PRK12557 153 QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKE 231 (342)
T ss_pred cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 2344555544 88999999999999999 65555 69999999999999999999999999999999999987
Q ss_pred HHHHH
Q 018694 250 FLNAI 254 (351)
Q Consensus 250 ~~~~~ 254 (351)
+.+.+
T Consensus 232 ~~~~~ 236 (342)
T PRK12557 232 MIEKQ 236 (342)
T ss_pred HHHHH
Confidence 76654
No 44
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.85 E-value=1.4e-19 Score=167.75 Aligned_cols=255 Identities=19% Similarity=0.200 Sum_probs=168.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----------cCCHHHhhcCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----------ADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----------~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
|||+|||+|+||+.+|..|.++|++|++++|++++.+.+.+.|+.. .++.++. .++|+||+|+ ++.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~-k~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV-KAYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec-cccc
Confidence 6899999999999999999999999999999888888777766532 3445554 7899999999 7888
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC----cEEeccCC-CCc-hhhccCceeEEecC--CH
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC----SAIDAPVS-GGD-RGAKTGTLAIFAGG--DE 190 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~----~~v~~pv~-~~~-~~~~~g~~~~~~~g--~~ 190 (351)
+++++. .+.+.+.+++.||.+.|+ .+..+.+.+.+....+ .+..+-.. ++. .....+.+. +... ..
T Consensus 79 ~~~~~~----~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~-ig~~~~~~ 152 (304)
T PRK06522 79 LPAALP----SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLK-IGEPDGES 152 (304)
T ss_pred HHHHHH----HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEE-EeCCCCCc
Confidence 999999 888888888899999998 4445566665543221 11111111 111 111123322 2221 22
Q ss_pred HHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH-
Q 018694 191 SVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAGLNV- 247 (351)
Q Consensus 191 ~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~Gi~~- 247 (351)
+..+.+.++|+..+. +.+..++....|.|++.|...+. +..++.|+..++++.|++.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 232 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS 232 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 335677778887777 55566689999999998876543 4566789999999998764
Q ss_pred -HHHHHHHhcCCCCc-hhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 248 -ELFLNAISTGAAGS-KSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 248 -~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
+.+.+.+....... .........+..+... +++.+. ++++++++++|+++|.++.++++++...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~t---Eid~i~---G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 233 VEEVREYVRQVIQKTAANTSSMLQDLEAGRPT---EIDAIV---GYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred hHHHHHHHHHHhhccCCCCchHHHHHHcCCCc---ccchhc---cHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 33333332211000 0000011111122111 233322 68999999999999999999999977654
No 45
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.84 E-value=3.3e-19 Score=167.15 Aligned_cols=268 Identities=13% Similarity=0.091 Sum_probs=195.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-------CeEEEEeCCccc-----chhHHhc--------------CCcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-------YTVTVFNRTLSK-----AQPLLDI--------------GAHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-------~~V~~~dr~~~~-----~~~~~~~--------------g~~~~~~~~~~ 102 (351)
.|||+|||+|+||+++|..|.++| ++|.+|.|+++. .+.+.+. ++..+++.+++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 379999999999999999999987 799999999762 4555433 24457788889
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCccc--CCCCCcEEEecCCCChh-------HHHHHHHHHhcCCCcEEeccCCCC
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALS--GLRPGGIIVDMTTSEPS-------LASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~--~l~~~~~ii~~s~~~~~-------~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
++++|+||++| |++.+++++. ++.+ .+.++.++|+++.|... .++.+.+.+. ..+.++.+|.+..
T Consensus 91 v~~aDiIvlAV-Psq~l~~vl~----~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~ 164 (365)
T PTZ00345 91 VEDADLLIFVI-PHQFLESVLS----QIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVAN 164 (365)
T ss_pred HhcCCEEEEEc-ChHHHHHHHH----HhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHH
Confidence 99999999999 8899999999 8887 77777799999987431 2344444443 3566788999998
Q ss_pred chhhccCceeEEecCCHHHHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHHHHH
Q 018694 174 DRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVGLVE 235 (351)
Q Consensus 174 ~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~E 235 (351)
++.....+...+++.+.+..+.++++|+.-.. ++...|. |....+++..|.-.+.+..++.|
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 88887777777778899988999999986555 3333332 66666677789999999999999
Q ss_pred HHHHHHHcC--CCHHHHHHHHhcCCCCchhhhhhh-------hhcccCCCCCccchhh------------HHHHHHHHHH
Q 018694 236 GMVYAHKAG--LNVELFLNAISTGAAGSKSLDLHG-------SRILKRDFEPGFFVNH------------FVKDLGICLK 294 (351)
Q Consensus 236 a~~la~~~G--i~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~------------~~kd~~~~~~ 294 (351)
+..++++.| .++++++.+...++. ...+++ ..+.++. .+.+++. .......+.+
T Consensus 245 m~~l~~a~g~~~~~~T~~glaG~GDL---i~Tc~sSRN~~~G~~l~~g~--~~~~~~~~~~~~~~~~~vEG~~t~~~v~~ 319 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFESCGLADL---ITTCLGGRNVRCAAEFAKRN--GKKSWEEIEAELLNGQKLQGTVTLKEVYE 319 (365)
T ss_pred HHHHHHHhCCCCCccchhccchHhHh---hhcccCCCcHHHHHHHhccC--CCCCHHHHHHHhhCCcEechHHHHHHHHH
Confidence 999999996 478888876554442 111221 1111110 0012222 2334457889
Q ss_pred HHHhcCC--CCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 018694 295 ECQNMGL--ALPGLALAQQLYLSLKAHGEGNLGTQALILALE 334 (351)
Q Consensus 295 ~a~~~gv--~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~ 334 (351)
+++++++ ++|+++++|+++. ++.+...+++.+.
T Consensus 320 l~~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~ 354 (365)
T PTZ00345 320 VLESHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVLS 354 (365)
T ss_pred HHHHcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 9999999 8999999999984 4456666666554
No 46
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.83 E-value=4.9e-19 Score=161.69 Aligned_cols=240 Identities=18% Similarity=0.183 Sum_probs=174.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC----CeEEEEeCCc-ccchhHHhc--CCcccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG----YTVTVFNRTL-SKAQPLLDI--GAHLADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g----~~V~~~dr~~-~~~~~~~~~--g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
|+||+|||+|+||.+++..|.+.| ++|.+|+|++ ++.+.+... +.....+..+++.++|+||+|+ +++.+.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilav-pp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICV-PPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEec-CHHHHHH
Confidence 589999999999999999999988 6899999864 334444433 3444567788888999999999 7888999
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNP 198 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ 198 (351)
++. ++.+++.++++||+++++.. ..++.+.++ ...++++ |+.+...+. |...+..+. +++..+.++.
T Consensus 80 vl~----~l~~~l~~~~~ivS~~aGi~--~~~l~~~~~--~~~vvR~MPN~~~~~g~--g~t~~~~~~~~~~~~~~~v~~ 149 (277)
T PRK06928 80 LLK----DCAPVLTPDRHVVSIAAGVS--LDDLLEITP--GLQVSRLIPSLTSAVGV--GTSLVAHAETVNEANKSRLEE 149 (277)
T ss_pred HHH----HHHhhcCCCCEEEEECCCCC--HHHHHHHcC--CCCEEEEeCccHHHHhh--hcEEEecCCCCCHHHHHHHHH
Confidence 998 88888888889999999855 337777664 2467776 887665553 544444333 6778889999
Q ss_pred HHHhhCceEEcCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc-CCCHHHHHHHHhcCCCCchhhh--
Q 018694 199 LFALMGKVNYMGGS---------GKGQFAKLANQITIATTMVGLVEGMV-YAHKA-GLNVELFLNAISTGAAGSKSLD-- 265 (351)
Q Consensus 199 ll~~~g~~~~~g~~---------g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~-Gi~~~~~~~~~~~~~~~s~~~~-- 265 (351)
+|+.+|.++++.+. |++.+ +...+.|++. .+.+. |++++++.+++.....|+..+-
T Consensus 150 l~~~~G~~~~v~E~~~d~~tal~gsgPA-----------~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~ 218 (277)
T PRK06928 150 TLSHFSHVMTIREENMDIASNLTSSSPG-----------FIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVE 218 (277)
T ss_pred HHHhCCCEEEEchhhCceeeeeecCHHH-----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999997776542 55555 6677778777 78888 7999999999887775544332
Q ss_pred --hhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 266 --LHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 266 --~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
.....+.+...+||.+... .++..++ |++.-+.+++....++.++
T Consensus 219 ~~~~p~~l~~~v~spgGtT~~-------gl~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 219 EDYTFSGTIERVATKGGITAE-------GAEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred cCCCHHHHHHhCCCCChHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1123445555667766543 3355554 7777777777777776654
No 47
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=5.3e-19 Score=161.77 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=162.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------------------C-CcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------------------G-AHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~D 107 (351)
+.++|+|||+|.+|..+|..++++|++|+++|.++.+++.++.. | ++.+++++++ +.||
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~d 86 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECD 86 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCC
Confidence 34899999999999999999999999999999999887665432 2 5556666665 4899
Q ss_pred EEEEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC--CCc------EEecc-
Q 018694 108 VVFSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK--NCS------AIDAP- 169 (351)
Q Consensus 108 iIi~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~------~v~~p- 169 (351)
++|+|||.|- .+++..+ .+.+.+.+|.+||--|++.|++++++...+.+. |.. +.-+|
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~----sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPE 162 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAAR----SIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPE 162 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHH----HHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcc
Confidence 9999997663 3566777 888999999999999999999999998887653 222 22344
Q ss_pred -CCCCchhhccCceeEEecC-CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018694 170 -VSGGDRGAKTGTLAIFAGG-DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLN 246 (351)
Q Consensus 170 -v~~~~~~~~~g~~~~~~~g-~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 246 (351)
+.++......-...-+.|| ++...+.+..+.+.+-. ++.+.+...|.+.|+..|.+....+++.+|...+|++.|++
T Consensus 163 Rv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GId 242 (436)
T COG0677 163 RVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGID 242 (436)
T ss_pred ccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 3333322222122333445 77777888888888766 77888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 018694 247 VELFLNAISTGA 258 (351)
Q Consensus 247 ~~~~~~~~~~~~ 258 (351)
..+++++.+...
T Consensus 243 vwevIeaAnt~P 254 (436)
T COG0677 243 VWEVIEAANTKP 254 (436)
T ss_pred HHHHHHHhccCC
Confidence 999999987764
No 48
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.82 E-value=6.6e-19 Score=163.01 Aligned_cols=253 Identities=15% Similarity=0.122 Sum_probs=168.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccC-----------CHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLAD-----------SPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~-----------~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|||+|+||+.+|..|.++|++|++++|+.++++.++++ |+...+ ...+....+|+||+|| |..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence 799999999999999999999999999999988888877754 433211 1112234689999999 999
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC----CcEEeccCCC-CchhhccCceeEEecC-CHH
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN----CSAIDAPVSG-GDRGAKTGTLAIFAGG-DES 191 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~----~~~v~~pv~~-~~~~~~~g~~~~~~~g-~~~ 191 (351)
++++++. .+.+.+.+++.|+.+.|| .+..+.+.+.++... +.++.+...+ +.+. ..+.-.+..|. +.+
T Consensus 82 ~~~~al~----~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~-~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 82 DAEPAVA----SLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASSTEGAFRDGDWRVV-FAGHGFTWLGDPRNP 155 (305)
T ss_pred hHHHHHH----HHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEE-EeceEEEEEcCCCCc
Confidence 9999999 899999999999999999 455567777765332 1222221111 1111 11111122332 334
Q ss_pred HHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCHH--HH
Q 018694 192 VVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT------------------TMVGLVEGMVYAHKAGLNVE--LF 250 (351)
Q Consensus 192 ~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~------------------~~~~~~Ea~~la~~~Gi~~~--~~ 250 (351)
..+++.++|...|. ..+..++-...|.|++.|...+. +..++.|+..++++.|++.. .+
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~ 235 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANL 235 (305)
T ss_pred chHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 45667778887776 66666789999999998886553 45667899889999997642 22
Q ss_pred HHHHh----cCCC-CchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 018694 251 LNAIS----TGAA-GSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAH 319 (351)
Q Consensus 251 ~~~~~----~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~ 319 (351)
.+.+. .... .+.|+ ..+.++. ..+++.+. ++++++++++|+++|.++.++++++....+
T Consensus 236 ~~~~~~~~~~~~~~~sSM~----qD~~~gR---~tEid~i~---G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~ 299 (305)
T PRK05708 236 HEEVQRVIQATAANYSSMY----QDVRAGR---RTEISYLL---GYACRAADRHGLPLPRLQHLQQRLVAHLRA 299 (305)
T ss_pred HHHHHHHHHhccCCCcHHH----HHHHcCC---ceeehhhh---hHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence 22221 1110 11111 1111111 11333333 789999999999999999999988887654
No 49
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.82 E-value=2e-18 Score=159.16 Aligned_cols=251 Identities=21% Similarity=0.240 Sum_probs=176.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC------------CHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD------------SPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~------------~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|+|+|+||+.++..|.++|++|+++.|++. ++++++.|+...+ +..+....+|+||++| |..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 7999999999999999999999999999999865 7888887644322 2234445799999999 999
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC------C--CchhhccCceeE--Eec
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS------G--GDRGAKTGTLAI--FAG 187 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~------~--~~~~~~~g~~~~--~~~ 187 (351)
++++++. .+.+.+.+++.|+.+.|| .++.+.+.+..+.. +++.+-+. + .......|.+.+ +.+
T Consensus 79 q~~~al~----~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~--~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~ 151 (307)
T COG1893 79 QLEEALP----SLAPLLGPNTVVLFLQNG-LGHEEELRKILPKE--TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRG 151 (307)
T ss_pred cHHHHHH----HhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcc--eEEEEEeeeeeEecCCceEEEecCCcEEEccCCC
Confidence 9999999 999999999999999999 55556777776644 23322111 1 111111122222 122
Q ss_pred CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC-
Q 018694 188 GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAG- 244 (351)
Q Consensus 188 g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~G- 244 (351)
+.++..+.+.++|+..+. +.+..++-...|.|++.|...+. +...+.|+..++.+.|
T Consensus 152 ~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 152 GRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred CchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccC
Confidence 344677888888888777 66677799999999999998884 5567789999999999
Q ss_pred -CCHHHHHHH---HhcC--CCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 018694 245 -LNVELFLNA---ISTG--AAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKA 318 (351)
Q Consensus 245 -i~~~~~~~~---~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~ 318 (351)
++.+...++ .... ...+.|+ +.+..+..+ +++.+. +++++.|+++|+++|+++.++++++....
T Consensus 232 ~~~~~~~~~v~~~~~~~~~~~~sSM~----qDl~~gr~t---Eid~i~---G~vv~~a~~~gi~~P~~~~L~~lvk~~e~ 301 (307)
T COG1893 232 ELPEEVVERVLAVIRATDAENYSSML----QDLEKGRPT---EIDAIN---GAVVRLAKKHGLATPVNDTLYALLKAKEA 301 (307)
T ss_pred CCCHHHHHHHHHHHHhcccccCchHH----HHHHcCCcc---cHHHHh---hHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 444322333 3333 1112222 112222111 344444 78999999999999999999999998875
Q ss_pred c
Q 018694 319 H 319 (351)
Q Consensus 319 ~ 319 (351)
.
T Consensus 302 ~ 302 (307)
T COG1893 302 E 302 (307)
T ss_pred h
Confidence 4
No 50
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.82 E-value=4.6e-19 Score=165.17 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=183.3
Q ss_pred eEEEEccChhhHHHHHHHHHCC--------CeEEEEeC-----CcccchhHHhc--------------CCcccCCHHHhh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAG--------YTVTVFNR-----TLSKAQPLLDI--------------GAHLADSPHSLA 103 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g--------~~V~~~dr-----~~~~~~~~~~~--------------g~~~~~~~~~~~ 103 (351)
||+|||+|+||+++|..|+++| ++|.+|.| +++..+.+.+. ++..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 33333333322 134567888999
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH-------HHHHHHHHhcCCCcEEeccCCCCchh
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL-------ASELSAAASSKNCSAIDAPVSGGDRG 176 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~-------~~~l~~~~~~~~~~~v~~pv~~~~~~ 176 (351)
+++|+||+++ +++.+++++. ++.+++.+++++|++++|.... ++.+.+.+ ...+.++.+|.+.....
T Consensus 81 ~~ADiIIlAV-Ps~~i~~vl~----~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 81 KGADILVFVI-PHQFLEGICK----QLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVA 154 (342)
T ss_pred hcCCEEEEEC-ChHHHHHHHH----HHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHH
Confidence 9999999999 8999999999 8988888889999999864322 33444444 24566788899998888
Q ss_pred hccCceeEEecCC----HHHHHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHHHH
Q 018694 177 AKTGTLAIFAGGD----ESVVQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVGLV 234 (351)
Q Consensus 177 ~~~g~~~~~~~g~----~~~~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~ 234 (351)
....+...+.+.+ .+..+.++++|+.-.. ++...|. |....+++..|.-.+.+..++.
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 7777666767777 7888899999986444 3333332 5566666778998999999999
Q ss_pred HHHHHHHHcCCCHH--HHHHHHhcCCCCchhhhhhhhhcccCCCC------C-ccchhhHH------------HHHHHHH
Q 018694 235 EGMVYAHKAGLNVE--LFLNAISTGAAGSKSLDLHGSRILKRDFE------P-GFFVNHFV------------KDLGICL 293 (351)
Q Consensus 235 Ea~~la~~~Gi~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------~-~~~~~~~~------------kd~~~~~ 293 (351)
|+..++++.|-+++ +++.+...++.- ...++ .|++. . |.+++... .-...+.
T Consensus 235 Em~~l~~~~g~~~~~~T~~gl~G~GDL~---~Tc~s----sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~ 307 (342)
T TIGR03376 235 EMIKFARMFFPTGEVTFTFESCGVADLI---TTCLG----GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVH 307 (342)
T ss_pred HHHHHHHHhCCCCCCCcccccchhhhhh---heeec----CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHH
Confidence 99999999998776 776655444321 11111 11111 1 33333332 2345788
Q ss_pred HHHHhcCCC--CcHHHHHHHHHH
Q 018694 294 KECQNMGLA--LPGLALAQQLYL 314 (351)
Q Consensus 294 ~~a~~~gv~--~p~~~~~~~l~~ 314 (351)
+++++++++ +|+++++|+++.
T Consensus 308 ~l~~~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 308 ELLKNKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred HHHHHcCCCcCCCHHHHHHHHHh
Confidence 999999999 999999999984
No 51
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.82 E-value=1.5e-18 Score=157.11 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=166.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe---EEEEeCCcccchhHHhc--CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT---VTVFNRTLSKAQPLLDI--GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~---V~~~dr~~~~~~~~~~~--g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
|||+|||+|+||.++++.|.+.|++ |.+|+|++++.+.+.+. +...+.+..++++++|+||+|+ +++++.+++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav-~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAV-RPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEe-CHHHHHHHHH
Confidence 5899999999999999999998864 57899999988887765 4667788888889999999999 6888999998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHHHHHHHHHHHhhC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG 204 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g 204 (351)
++. +.++++||++..+.. .+.+.+.+......+...|+...... .+. ..+++++ +.++++|+.+|
T Consensus 80 ----~l~--~~~~~~vis~~ag~~--~~~l~~~~~~~~~~~r~~P~~~~a~~--~g~-t~~~~~~----~~~~~l~~~lG 144 (258)
T PRK06476 80 ----ALR--FRPGQTVISVIAATD--RAALLEWIGHDVKLVRAIPLPFVAER--KGV-TAIYPPD----PFVAALFDALG 144 (258)
T ss_pred ----Hhc--cCCCCEEEEECCCCC--HHHHHHHhCCCCCEEEECCCChhhhC--CCC-eEecCCH----HHHHHHHHhcC
Confidence 652 467889999776533 55777766533334445577544322 233 4444443 57999999999
Q ss_pred ceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhh--hh--hh-hhcccCCCCCc
Q 018694 205 KVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSL--DL--HG-SRILKRDFEPG 279 (351)
Q Consensus 205 ~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~--~~--~~-~~~~~~~~~~~ 279 (351)
..+++.+...-...-.+. ...+.+..++.++..++++.|++++++.+++.....++..+ .. .. ..+.+.-.+||
T Consensus 145 ~~~~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 145 TAVECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred CcEEECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence 955555321111111111 13333445677777799999999999999988776554433 11 11 23344445676
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 280 FFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 280 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
.+... .++..++.|+.-.+.+++....+++.
T Consensus 224 GtT~~-------gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 224 GLNEQ-------VLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred chHHH-------HHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 66543 55777888888777777766666554
No 52
>PRK07680 late competence protein ComER; Validated
Probab=99.81 E-value=1.9e-18 Score=157.67 Aligned_cols=238 Identities=22% Similarity=0.214 Sum_probs=157.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchhHHhc--CCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLDI--GAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~~~~~--g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|||+|||+|+||.+++..|.++|+ +|.+|+|++++.+.+.+. |+....+..+++.++|+||+|+ +++++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav-~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICV-KPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEec-CHHHHHHHH
Confidence 589999999999999999999984 799999999888777664 6777778888889999999999 888899999
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEec--CCHHHHHHHHHHHH
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAG--GDESVVQKLNPLFA 201 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~--g~~~~~~~v~~ll~ 201 (351)
. ++.+++.++++||+++++.. .+.+.+.++...++++ |... .....|.+.+..+ .+++..+.++++|+
T Consensus 80 ~----~l~~~l~~~~~iis~~ag~~--~~~L~~~~~~~~~r~~--p~~~--~~~~~G~t~~~~g~~~~~~~~~~~~~ll~ 149 (273)
T PRK07680 80 Q----KLAPHLTDEHCLVSITSPIS--VEQLETLVPCQVARII--PSIT--NRALSGASLFTFGSRCSEEDQQKLERLFS 149 (273)
T ss_pred H----HHHhhcCCCCEEEEECCCCC--HHHHHHHcCCCEEEEC--CChH--HHHhhccEEEeeCCCCCHHHHHHHHHHHH
Confidence 8 88888888899999998753 5567766653333344 3322 2333566554444 26677889999999
Q ss_pred hhCceEEcCCc-c-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-cCCCHHHHHHHHhcCCCCchhhhh----hhhhccc
Q 018694 202 LMGKVNYMGGS-G-KGQFAKLANQITIATTMVGLVEGMV-YAHK-AGLNVELFLNAISTGAAGSKSLDL----HGSRILK 273 (351)
Q Consensus 202 ~~g~~~~~g~~-g-~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~-~Gi~~~~~~~~~~~~~~~s~~~~~----~~~~~~~ 273 (351)
.+|..+++.+. . ....+--+... +...+.|++. .+.+ .|++.+++.+++.....++..+.. ....+.+
T Consensus 150 ~~G~~~~i~e~~~~~~~~l~gs~pa----~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~ 225 (273)
T PRK07680 150 NISTPLVIEEDITRVSSDIVSCGPA----FFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQE 225 (273)
T ss_pred cCCCEEEEChHhcchhhhhccchHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99996666542 1 11111111112 3333333333 3344 899999999888766544333221 1233445
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 018694 274 RDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 274 ~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
...+||.+... .++..++ +++.-+.+++.
T Consensus 226 ~v~spgG~T~~-------gl~~le~-~~~~~~~~~~~ 254 (273)
T PRK07680 226 KVCVKGGITGE-------GIKVLEE-EVGDMFHRLFQ 254 (273)
T ss_pred hCCCCChhHHH-------HHHHHHH-HHHHHHHHHHH
Confidence 55667766543 3344555 44444444443
No 53
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.79 E-value=2.3e-18 Score=137.88 Aligned_cols=121 Identities=40% Similarity=0.588 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhh-cccCCCCCccchhhHHHHHHH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSR-ILKRDFEPGFFVNHFVKDLGI 291 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~ 291 (351)
|++...|+++|.+...++..+.|++.++++.|++++++.+++..+.+.++.++.+.++ +.+++|.++|+++...||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 6889999999999999999999999999999999999999999999999999999885 899999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 018694 292 CLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILAL 333 (351)
Q Consensus 292 ~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~ 333 (351)
+++++++.|+|+|+.+.+.++++.+.++|+++.|++++++.|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999876
No 54
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.79 E-value=1.2e-17 Score=151.29 Aligned_cols=245 Identities=17% Similarity=0.194 Sum_probs=168.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
|||+|||+|+||.+++..|.+++. ++++++|++++. +.....++.+.++++|+||+|+ +++++++++.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilav-kp~~~~~vl~- 75 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAV-KPDLAGKVLL- 75 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEe-CHHHHHHHHH-
Confidence 799999999999999999998873 499999986552 2344567778888999999999 9999999999
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHh
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFAL 202 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~ 202 (351)
++.+++.+ ++||++.++.. .+.+.+.++. ...+++. |+.+...+ .+...+..+. +++..+.++.+|+.
T Consensus 76 ---~i~~~l~~-~~iIS~~aGi~--~~~l~~~~~~-~~~vvr~mPn~p~~~g--~g~t~i~~~~~~~~~~~~~v~~l~~~ 146 (260)
T PTZ00431 76 ---EIKPYLGS-KLLISICGGLN--LKTLEEMVGV-EAKIVRVMPNTPSLVG--QGSLVFCANNNVDSTDKKKVIDIFSA 146 (260)
T ss_pred ---HHHhhccC-CEEEEEeCCcc--HHHHHHHcCC-CCeEEEECCCchhHhc--ceeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 88877754 56777777644 3455555432 2223333 55544333 3443333222 56778899999999
Q ss_pred hCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhh-hhh---hhhcccCCCC
Q 018694 203 MGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSL-DLH---GSRILKRDFE 277 (351)
Q Consensus 203 ~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~-~~~---~~~~~~~~~~ 277 (351)
+|.++++.+...-.+. +.....-.+...+.|++. .+.+.|++.+++.+++.+...|+..+ ... ...+.+...+
T Consensus 147 ~G~~~~v~E~~~d~~t--a~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~s 224 (260)
T PTZ00431 147 CGIIQEIKEKDMDIAT--AISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCS 224 (260)
T ss_pred CCcEEEEChHHcchhh--hhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCC
Confidence 9997777642111111 111111125666777777 89999999999999988877544333 222 2245555667
Q ss_pred CccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 278 PGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 278 ~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
||.+... .++..++.|+..-+.+++.+..+++.+.|
T Consensus 225 pgG~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 225 PGGITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred CChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 8776643 55778889999999999988888887643
No 55
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.78 E-value=5.8e-17 Score=148.11 Aligned_cols=190 Identities=18% Similarity=0.306 Sum_probs=141.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
|||+|||+|.||.+++..|.+.|+ +|++||+++++.+.+.+.|+. ...+.+++. ++|+||+|+ ++..+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilav-p~~~~~~~~~-- 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAI-PVDAIIEILP-- 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeC-cHHHHHHHHH--
Confidence 589999999999999999999996 789999999888877777753 445666765 599999999 7777888888
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCC----chhh----ccCceeEEec---CCHHHHH
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGG----DRGA----KTGTLAIFAG---GDESVVQ 194 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~----~~~~----~~g~~~~~~~---g~~~~~~ 194 (351)
++.+ +.++++|+++++......+.+.+. .+..|+.+ |+.|. +... ..+..+++++ .+++..+
T Consensus 77 --~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~ 150 (275)
T PRK08507 77 --KLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQE 150 (275)
T ss_pred --HHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHH
Confidence 8888 888999999887655544444333 23568888 98764 2221 2456566664 3677889
Q ss_pred HHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 195 KLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 195 ~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++++|+.+|. ++++++.+....+++++++.. ....++.+++ . .+.+.+.+.+..
T Consensus 151 ~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~ 206 (275)
T PRK08507 151 RAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLA 206 (275)
T ss_pred HHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhc
Confidence 99999999998 889999999999999999865 3344444443 1 355555544443
No 56
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.6e-17 Score=163.13 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=144.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
..||+|||+|.||..||..|+.+|++|++||++++.++.. .++| +...+++++ +.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 4689999999999999999999999999999999887663 4445 466777766 56
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEE-ecCCCChhHHHHHHHHHhc----CCCcEEe-ccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIV-DMTTSEPSLASELSAAASS----KNCSAID-APVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii-~~s~~~~~~~~~l~~~~~~----~~~~~v~-~pv~~~~~~~~ 178 (351)
+||+||.|+|+..++++.+.+ ++...+.+++++. ++|+..+. ++++.+.. .|.+|++ +|++
T Consensus 86 ~aDlViEav~E~~~vK~~vf~---~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~------- 152 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFA---QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM------- 152 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHH---HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC-------
Confidence 999999999999999988773 4555566777774 66666553 45555542 2777877 5666
Q ss_pred cCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018694 179 TGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNA 253 (351)
Q Consensus 179 ~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 253 (351)
.++.+++| ++++.+.+.++++.+|+ ++++++ .|. ++|+++. .++.|++.++++.+++++++.++
T Consensus 153 --~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrll~----~~~~Ea~~l~~~g~~~~~~iD~a 221 (507)
T PRK08268 153 --KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVNRAAR----PYYTEALRVLEEGVADPATIDAI 221 (507)
T ss_pred --eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHH
Confidence 45777765 89999999999999999 888887 562 3333332 47999999999999999999999
Q ss_pred HhcCCC
Q 018694 254 ISTGAA 259 (351)
Q Consensus 254 ~~~~~~ 259 (351)
+..+.+
T Consensus 222 l~~~~G 227 (507)
T PRK08268 222 LREAAG 227 (507)
T ss_pred HHhcCC
Confidence 876543
No 57
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.75 E-value=4.2e-17 Score=150.00 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=137.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc------------------------CCcccCCHHHhhcC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI------------------------GAHLADSPHSLASQ 105 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~~~~~~ 105 (351)
.||+|||+|.||..+|..|+++|++|++||++++.++.+.+. ++..++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 689999999999999999999999999999999887665421 13456778888999
Q ss_pred CCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEE-EecCCCChhHHHHHHHHHhc----CCCcEEeccCCCCchhhccC
Q 018694 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGII-VDMTTSEPSLASELSAAASS----KNCSAIDAPVSGGDRGAKTG 180 (351)
Q Consensus 106 ~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~i-i~~s~~~~~~~~~l~~~~~~----~~~~~v~~pv~~~~~~~~~g 180 (351)
+|+||+|+|...+++..+.. ++.+.+.+++++ +++|+..+. .+.+.+.. .+.+|+ +|+.+.
T Consensus 82 aD~Vi~avpe~~~~k~~~~~---~l~~~~~~~~il~~~tSt~~~~---~l~~~~~~~~r~~g~h~~-~Pv~~~------- 147 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFE---TADAHAPAECYIATNTSTMSPT---EIASFTKRPERVIAMHFF-NPVHKM------- 147 (288)
T ss_pred CCEEEEeccCCHHHHHHHHH---HHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEEecC-CCcccC-------
Confidence 99999999888777655442 666677788866 677776654 34444432 255666 666543
Q ss_pred ceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 181 TLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 181 ~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
.++.++++ ++++++.+.++++.+|+ ++++++ .|. . ++ ......++|++.+.+....+++++...+.
T Consensus 148 ~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf--~---~n----Rl~~~~~~ea~~~~~~gv~~~~~iD~~~~ 218 (288)
T PRK09260 148 KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGF--V---TS----RISALVGNEAFYMLQEGVATAEDIDKAIR 218 (288)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccH--H---HH----HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56788887 99999999999999999 788876 443 1 11 22335678988877765567888887776
Q ss_pred cCC
Q 018694 256 TGA 258 (351)
Q Consensus 256 ~~~ 258 (351)
.+.
T Consensus 219 ~g~ 221 (288)
T PRK09260 219 LGL 221 (288)
T ss_pred hCC
Confidence 554
No 58
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.75 E-value=2.9e-16 Score=149.05 Aligned_cols=184 Identities=18% Similarity=0.280 Sum_probs=144.6
Q ss_pred CCCCCCCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 43 DPVCPTNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 43 ~~~~~~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
.+.++.++||+||| +|.||..+|..|.++|++|++||+++. ++.++++.++|+||+|+ +.....+
T Consensus 92 ~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilav-P~~~~~~ 157 (374)
T PRK11199 92 KTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSV-PIHLTEE 157 (374)
T ss_pred cccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeC-cHHHHHH
Confidence 44445678999998 999999999999999999999998631 35667788999999999 5555677
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe-ccCCCCchhhccCceeEEecC-CHHHHHHHHHH
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID-APVSGGDRGAKTGTLAIFAGG-DESVVQKLNPL 199 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~-~pv~~~~~~~~~g~~~~~~~g-~~~~~~~v~~l 199 (351)
++. ++.+ +.++++|+|+++..+.....+.+... + .|+. .|++|.......+..+++.++ +++..+.+.++
T Consensus 158 ~~~----~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~-~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 158 VIA----RLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--G-PVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHH----HHhC-CCCCcEEEECCCccHHHHHHHHHhCC--C-CEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 887 7777 88999999999887766666665543 2 5774 499998766556666666666 66788899999
Q ss_pred HHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018694 200 FALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLN 252 (351)
Q Consensus 200 l~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 252 (351)
++.+|. +++++..+....++++..+ .++.+++++..+++ .+.+.+.+.+
T Consensus 230 ~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 230 IQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 999999 8889988888898888833 57777788777766 7777666533
No 59
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.74 E-value=8.2e-17 Score=157.74 Aligned_cols=186 Identities=18% Similarity=0.202 Sum_probs=140.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
..||+|||+|.||..||..|+++|++|++||++++.++.. .++| +..++++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3689999999999999999999999999999999877542 2233 345677765 46
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc----CCCcEEe-ccCCCCchhhcc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS----KNCSAID-APVSGGDRGAKT 179 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~----~~~~~v~-~pv~~~~~~~~~ 179 (351)
+||+||.|+|...++++.+.+ ++...+.+++++. .++++... .++++.+.. .|.+|++ +|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~---~l~~~~~~~~Ila-snTStl~i-~~iA~~~~~p~r~~G~HFf~Papv~-------- 150 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFA---QLEELCPADTIIA-SNTSSLSI-TAIAAGLARPERVAGLHFFNPAPVM-------- 150 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHH---HHHhhCCCCeEEE-ECCCCCCH-HHHHHhcCcccceEEEeccCccccC--------
Confidence 999999999999999888772 4545555555544 33332332 245555532 3677776 5666
Q ss_pred CceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 180 GTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 180 g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++.+++| ++++.+.+.++++.+|+ ++++++ .|. ++|+++ ..++.|++.++++.+.+++++.+++
T Consensus 151 -~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~----~~~~~EA~~l~e~g~a~~~~ID~al 220 (503)
T TIGR02279 151 -ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVA----RPYYAEALRALEEQVAAPAVLDAAL 220 (503)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 36788888 99999999999999999 788887 553 344444 3579999999999999999999998
Q ss_pred hcCC
Q 018694 255 STGA 258 (351)
Q Consensus 255 ~~~~ 258 (351)
+.+.
T Consensus 221 ~~~~ 224 (503)
T TIGR02279 221 RDGA 224 (503)
T ss_pred HhcC
Confidence 7654
No 60
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=4e-16 Score=145.19 Aligned_cols=192 Identities=18% Similarity=0.181 Sum_probs=138.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----C--------------CcccCCHHHhhcCCCE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----G--------------AHLADSPHSLASQSDV 108 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~~Di 108 (351)
.++||+|||+|.||..|+..|+++|++|++||+++++++.+.+. + +...++.++.++++|+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 35799999999999999999999999999999998877665441 1 2345677788889999
Q ss_pred EEEecCChhH-HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEe
Q 018694 109 VFSIVGYPSD-VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFA 186 (351)
Q Consensus 109 Ii~~vp~~~~-~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~ 186 (351)
||+|+|+..+ ...++. ++.+.+.++++|++.+++.+ ..++.+.+.. ..+++.. |+.+... +.+..++
T Consensus 83 Vi~av~~~~~~~~~v~~----~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~~----~~l~~i~ 151 (311)
T PRK06130 83 VIEAVPEKLELKRDVFA----RLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPADV----IPLVEVV 151 (311)
T ss_pred EEEeccCcHHHHHHHHH----HHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCcc----CceEEEe
Confidence 9999976654 455666 66666666667666665543 3466666542 2344444 3322211 1234444
Q ss_pred cC---CHHHHHHHHHHHHhhCc-eEEcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 018694 187 GG---DESVVQKLNPLFALMGK-VNYMGG--SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAA 259 (351)
Q Consensus 187 ~g---~~~~~~~v~~ll~~~g~-~~~~g~--~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~ 259 (351)
.+ +++..+.+.++++.+|. +++++. .|. +++|++. ..++|++.++++.|++++++.+++..+.+
T Consensus 152 ~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 152 RGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 44 68999999999999999 777764 344 5566643 56999999999999999999999876554
No 61
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.73 E-value=5.7e-16 Score=149.78 Aligned_cols=194 Identities=16% Similarity=0.260 Sum_probs=147.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-cCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
|||+||| +|.||.+++..|.+.|++|++|+|++++...++. .|+....+..+.+.++|+||+|+ +...+.+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlav-p~~~~~~vl~--- 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISV-PINVTEDVIK--- 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEec-CHHHHHHHHH---
Confidence 6899997 8999999999999999999999999877544443 37766778888889999999999 6677788888
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC---CHHHHHHHHHHHHhh
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPLFALM 203 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~ 203 (351)
++.+.+.++++|+|+++......+.+.+.++ .+..|+.+ |++|.......+..++++++ +++..+.++++|+.+
T Consensus 77 -~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 77 -EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred -HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 8888889999999999987777777777764 47789988 88876554556666666654 577889999999999
Q ss_pred Cc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018694 204 GK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNA 253 (351)
Q Consensus 204 g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 253 (351)
|. ++++++.... +++.+.....++.++..+..+ .+.|++.++....
T Consensus 155 G~~v~~~~~e~HD---~~~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 155 GARVIVTSPEEHD---RIMSVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred CCEEEECCHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 98 6666654332 333444444444445444433 6678887765443
No 62
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.73 E-value=7e-17 Score=147.80 Aligned_cols=171 Identities=17% Similarity=0.235 Sum_probs=131.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|||+|||+|.||.+++..|.++|++|++||++++..+.+.+.|.. ...+..+.+.++|+||+|+ ++..+.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilav-p~~~~~~~~~---- 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILAL-PIGLLLPPSE---- 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcC-CHHHHHHHHH----
Confidence 589999999999999999999999999999999888887777642 2323335678999999999 6677777888
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCc-hhh-------ccCceeEEec---CCHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGD-RGA-------KTGTLAIFAG---GDESVVQKL 196 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~-~~~-------~~g~~~~~~~---g~~~~~~~v 196 (351)
++.+.+.++.+|+|+++..+...+.+.+. ...|+.. |+.|.. .+. ..+..++++. ++++..+.+
T Consensus 76 ~l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v 151 (279)
T PRK07417 76 QLIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIV 151 (279)
T ss_pred HHHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHH
Confidence 88888888999999888765554444332 2347774 888765 222 2344344433 378888999
Q ss_pred HHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHH
Q 018694 197 NPLFALMGK-VNYMGGSGKGQFAKLANQITIATT 229 (351)
Q Consensus 197 ~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~ 229 (351)
+++++.+|. ++++++.+....++++++......
T Consensus 152 ~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 152 EELAVSLGSKIYTADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence 999999999 778999999999999988776554
No 63
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.73 E-value=2e-16 Score=142.15 Aligned_cols=201 Identities=16% Similarity=0.175 Sum_probs=139.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC---e-EEEEeC-CcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY---T-VTVFNR-TLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~---~-V~~~dr-~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+||+|||+|.||.+++..|.+.|+ + +++++| ++++.+.+.+. ++..+.+.+++++++|+||+|+ +++..+++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiav-p~~~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAM-PPSAHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEec-CHHHHHHH
Confidence 4789999999999999999998873 3 777887 46777777654 6777778888899999999999 67778989
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecCCHHHHHHHHHHHH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFA 201 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 201 (351)
+. ++.+.+. +++||+++.+.. .+.+.+.++ .+..++.. |++....+.....+.+....+++..+.++++|+
T Consensus 83 ~~----~l~~~~~-~~~vis~~~gi~--~~~l~~~~~-~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~ 154 (245)
T PRK07634 83 LA----ELSPLLS-NQLVVTVAAGIG--PSYLEERLP-KGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILK 154 (245)
T ss_pred HH----HHHhhcc-CCEEEEECCCCC--HHHHHHHcC-CCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHH
Confidence 98 7776664 679999998754 335666664 23344444 877665554322222222348888999999999
Q ss_pred hhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCC
Q 018694 202 LMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 202 ~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
.+|..+++.+...-.+ .+.....-.++..+.|++. .+.+.|+++++..+++.....+
T Consensus 155 ~~G~~~~~~e~~~~~~--~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g 212 (245)
T PRK07634 155 GIGTSQLCTEEEVHQL--TAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISG 212 (245)
T ss_pred hCCCEEEECHHHcchH--HhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999666654211111 0111111124455666555 7899999999999988766543
No 64
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=5.6e-15 Score=136.52 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=138.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c---------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I---------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~~Di 108 (351)
..||+|||+|.||..||..|+.+|++|++||++++..+.+.+ . .+...+++++++.+||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 478999999999999999999999999999999876544322 1 23566788899999999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEec
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAG 187 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~ 187 (351)
|+.|+|...+++..+.. ++...+.+++ ||..+++ .....++.+.+... -+++-. +..+... -.++.++.
T Consensus 87 ViEavpE~l~vK~~lf~---~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~----~pLVEVv~ 156 (321)
T PRK07066 87 IQESAPEREALKLELHE---RISRAAKPDA-IIASSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYL----LPLVEVLG 156 (321)
T ss_pred EEECCcCCHHHHHHHHH---HHHHhCCCCe-EEEECCC-ccCHHHHHHhcCCc-ccEEEEecCCcccc----CceEEEeC
Confidence 99999999988877763 6666677776 5545544 33345666666432 234333 2222211 13455555
Q ss_pred C---CHHHHHHHHHHHHhhCc-eEEcC-C-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 018694 188 G---DESVVQKLNPLFALMGK-VNYMG-G-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 188 g---~~~~~~~v~~ll~~~g~-~~~~g-~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
+ ++++.+.+..+++.+|+ .+.+. + .|. . +| .....++.|++.+.+....+++++..++..+.+.
T Consensus 157 g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGF--i---~N----Rl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 157 GERTAPEAVDAAMGIYRALGMRPLHVRKEVPGF--I---AD----RLLEALWREALHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEeEecCCCCccH--H---HH----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 4 88999999999999998 66664 3 332 2 12 2344568999999888889999999998877654
No 65
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=6.3e-16 Score=141.68 Aligned_cols=191 Identities=21% Similarity=0.235 Sum_probs=135.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchh-----------HHhcC-------------CcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-----------LLDIG-------------AHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~~~~~~ 103 (351)
.+.||+|||+|.||..||..++.+|++|++||++++.++. +.+.| +..+++. +.+
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~ 82 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF 82 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence 3568999999999999999999999999999999987655 33333 2356777 457
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCC-CCCcEEEecCCCChhHHHHHHHHHh--cC--CCcEEe-ccCCCCchhh
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGL-RPGGIIVDMTTSEPSLASELSAAAS--SK--NCSAID-APVSGGDRGA 177 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l-~~~~~ii~~s~~~~~~~~~l~~~~~--~~--~~~~v~-~pv~~~~~~~ 177 (351)
++||+||.|+|+..++++.+.+ .+...+ .+++++++.+++.+.. .+..... ++ +.+|.. +++.+..
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~---~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~~r~~g~hf~~P~~~~~lv--- 154 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFA---ELDKVVTDPDAVLASNTSSIPIM--KLAAATKRPGRVLGLHFFNPVPVLPLV--- 154 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHH---HHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCCccEEEEecCCCcccCceE---
Confidence 8999999999999999988873 444455 6889999888876654 3444332 23 455555 2333221
Q ss_pred ccCceeEEecCCHHHHHHHHHHHH-hhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 178 KTGTLAIFAGGDESVVQKLNPLFA-LMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 178 ~~g~~~~~~~g~~~~~~~v~~ll~-~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++....+++++.+.+.+++. .+|+ ++.+++ .|. . ++ ......++|++.+.+....+++++...+
T Consensus 155 ---Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf--i---~n----Ri~~~~~~Ea~~ll~eGv~~~~dID~~~ 222 (286)
T PRK07819 155 ---ELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF--V---VN----ALLVPYLLSAIRMVESGFATAEDIDKAM 222 (286)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh--H---HH----HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 222223458999999999988 5999 677776 443 1 11 2244567899888776657788888887
Q ss_pred hcCCC
Q 018694 255 STGAA 259 (351)
Q Consensus 255 ~~~~~ 259 (351)
..+.+
T Consensus 223 ~~g~G 227 (286)
T PRK07819 223 VLGCA 227 (286)
T ss_pred HhCCC
Confidence 66543
No 66
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.69 E-value=4.3e-15 Score=140.65 Aligned_cols=196 Identities=18% Similarity=0.229 Sum_probs=137.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc----cCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL----ADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~----~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
+||+|||+|.||.+++..|.++|++|.+|+++++..+.....+... .++.++++.++|+||+|+ ++..+.+++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilav-P~~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAV-PVDATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeC-CHHHHHHHHH-
Confidence 3799999999999999999999999999999877654444333322 346677889999999999 6677889998
Q ss_pred CCCCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch--------hhccCceeEEec---CCHHH
Q 018694 126 PSSGALS-GLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR--------GAKTGTLAIFAG---GDESV 192 (351)
Q Consensus 126 ~~~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~--------~~~~g~~~~~~~---g~~~~ 192 (351)
++.+ .+.++.+|.|+++......+.+.+.+ ..+..|+.. |+.|... ....+..++++. .+++.
T Consensus 79 ---~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 79 ---ELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred ---HHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 7876 47788999998888776666665553 346788885 8777531 222444455554 37888
Q ss_pred HHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 193 VQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 193 ~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
++.++++++.+|. +++++.........++....... +++ ++...+.+.+...++...+.
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~i-----a~a--l~~~~~~~~~~~~~la~~gf 214 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHIL-----ASS--LAARLAGEHPLALRLAAGGF 214 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHH-----HHH--HHHhhccCchHHHhhhcccc
Confidence 9999999999999 66777655444544444433322 233 35555666666555555544
No 67
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.67 E-value=2.4e-15 Score=138.87 Aligned_cols=186 Identities=17% Similarity=0.223 Sum_probs=129.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchh-----------HHhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-----------LLDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~ 104 (351)
++||+|||+|.||..||..|+.+|++|++||+++++++. +.+.| +...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 468999999999999999999999999999999877643 22222 2233344 5678
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEe-cCCCChhHHHHHHHHHhc----CCCcEEeccCCCCchhhcc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVD-MTTSEPSLASELSAAASS----KNCSAIDAPVSGGDRGAKT 179 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~-~s~~~~~~~~~l~~~~~~----~~~~~v~~pv~~~~~~~~~ 179 (351)
+||+||+|+|...++++.+.. ++...+.++++|++ +++..+ ..+.+.+.. .+++|.+.|...
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~---~l~~~~~~~~il~s~tS~i~~---~~l~~~~~~~~r~~g~h~~~pp~~~------- 149 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFS---ELDRICKPSAILASNTSSISI---TRLASATQRPQQVIGMHFMNPPPIM------- 149 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHH---HHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCcceEEEeccCCcccC-------
Confidence 999999999877776666542 56667778888874 444433 345554432 134555555442
Q ss_pred CceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 180 GTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 180 g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++.++.+ +++..+.+.++|+.+|+ ++++++ .|. ++++++ ...++|++.+.+....+++++...+
T Consensus 150 -~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g~-----i~nri~----~~~~~ea~~~~~~gv~~~~~iD~~~ 219 (295)
T PLN02545 150 -KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPGF-----IVNRIL----MPMINEAFYALYTGVASKEDIDTGM 219 (295)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcccH-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33445543 88999999999999999 667776 342 334433 3458899998887778888888776
Q ss_pred hcCC
Q 018694 255 STGA 258 (351)
Q Consensus 255 ~~~~ 258 (351)
..+.
T Consensus 220 ~~g~ 223 (295)
T PLN02545 220 KLGT 223 (295)
T ss_pred Hhcc
Confidence 6544
No 68
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.66 E-value=3.1e-14 Score=128.97 Aligned_cols=164 Identities=20% Similarity=0.347 Sum_probs=124.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHhcCCccc--CCH-HHhhcCCCEEEEecCChhHHHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDIGAHLA--DSP-HSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~~g~~~~--~~~-~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+++|+|+|+|.||.+++..|.+.|+.|.+++++... .+...+.|+... .+. .+....+|+||+|| |...+.++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Vivav-Pi~~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAV-PIEATEEV 80 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEec-cHHHHHHH
Confidence 3589999999999999999999999988777665443 333333344321 222 45667799999999 88888999
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCC--chhhccCceeEEecC---CHHHHHHH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGG--DRGAKTGTLAIFAGG---DESVVQKL 196 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~--~~~~~~g~~~~~~~g---~~~~~~~v 196 (351)
+. ++.+.++++.+|.|.++......+.+.+..+... .|+.+ |++|+ ......+..++++.. +.+..+.+
T Consensus 81 l~----~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 81 LK----ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred HH----HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 99 8988999999999999998877777777765545 89988 99998 555556776666655 45678888
Q ss_pred HHHHHhhCc-eEEcCCccHHHH
Q 018694 197 NPLFALMGK-VNYMGGSGKGQF 217 (351)
Q Consensus 197 ~~ll~~~g~-~~~~g~~g~a~~ 217 (351)
.++++.+|. ++++.....-..
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~ 177 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRV 177 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHH
Confidence 999999998 666665444444
No 69
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.66 E-value=5.5e-15 Score=136.15 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=130.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh--------------cC-------------CcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD--------------IG-------------AHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~--------------~g-------------~~~~~~~~~ 101 (351)
+.||+|||+|.||..+|..|+.+|++|++||++++.++...+ .| +...++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 368999999999999999999999999999999887653211 12 1233444 5
Q ss_pred hhcCCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEe-ccCCCCch
Q 018694 102 LASQSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAID-APVSGGDR 175 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~-~pv~~~~~ 175 (351)
.+.++|+||+|+|+...+ ..++. ++.+.+.+++++++.+++.+ ..++++.+... +.+|.. +++.+.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~----~l~~~~~~~~il~S~tsg~~--~~~la~~~~~~~r~ig~hf~~P~~~~~~-- 153 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFA----ELERNVSPETIIASNTSGIM--IAEIATALERKDRFIGMHWFNPAPVMKL-- 153 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHH----HHHhhCCCCeEEEEcCCCCC--HHHHHhhcCCcccEEEEecCCCcccCcc--
Confidence 678999999999777654 44555 67677778888887666543 45666666432 334443 233322
Q ss_pred hhccCceeEEecC--CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018694 176 GAKTGTLAIFAGG--DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLN 252 (351)
Q Consensus 176 ~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 252 (351)
+-++.+. +++..+.+.++++.+|+ ++++++.+.....++..|+ +.|++.+.+..-.+++++..
T Consensus 154 ------vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~~~iD~ 219 (291)
T PRK06035 154 ------IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATIKDIDE 219 (291)
T ss_pred ------EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCHHHHHH
Confidence 1122222 88999999999999999 8888887776676666664 45887776554467888888
Q ss_pred HHhcCCC
Q 018694 253 AISTGAA 259 (351)
Q Consensus 253 ~~~~~~~ 259 (351)
++..+.+
T Consensus 220 ~~~~~~g 226 (291)
T PRK06035 220 MCKLAFG 226 (291)
T ss_pred HHhhcCC
Confidence 8765543
No 70
>PLN02256 arogenate dehydrogenase
Probab=99.65 E-value=2.9e-14 Score=131.38 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=121.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.+|||+|||+|.||.+++..|.+.|++|++|+++.. .+.....|+....+.++++ .++|+||+|+ ++..+.+++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilav-p~~~~~~vl~-- 110 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCT-SILSTEAVLR-- 110 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEec-CHHHHHHHHH--
Confidence 357999999999999999999999999999999863 2333445776677888876 4799999999 6778899998
Q ss_pred CCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchh--hccCceeEEec-------CCHHHHHH
Q 018694 127 SSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRG--AKTGTLAIFAG-------GDESVVQK 195 (351)
Q Consensus 127 ~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~--~~~g~~~~~~~-------g~~~~~~~ 195 (351)
++ .+.+.++++|+|++++.....+.+.+.++ .+..|+.+ |+.|.... ...+...++.. .+++..+.
T Consensus 111 --~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 111 --SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred --hhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 77 56678899999999976555666666654 35678887 88887643 22233233322 26678889
Q ss_pred HHHHHHhhCc-eEEcCCccHHHH
Q 018694 196 LNPLFALMGK-VNYMGGSGKGQF 217 (351)
Q Consensus 196 v~~ll~~~g~-~~~~g~~g~a~~ 217 (351)
+.++++.+|. ++.+.....-..
T Consensus 188 l~~l~~~lGa~v~~~~~eeHD~~ 210 (304)
T PLN02256 188 FLDIFEEEGCRMVEMSCEEHDRY 210 (304)
T ss_pred HHHHHHHCCCEEEEeCHHHHhHH
Confidence 9999999998 666665433333
No 71
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=1.2e-14 Score=134.01 Aligned_cols=187 Identities=20% Similarity=0.262 Sum_probs=129.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------cC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------IG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 104 (351)
.+||+|||+|.||..||..|+.+|++|++||++++.++.+.+ .| +...++.+ .+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence 468999999999999999999999999999999887655322 12 34456665 468
Q ss_pred CCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEe-ccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAID-APVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~-~pv~~~~~~~~ 178 (351)
++|+||+|+|...+++ .++. ++.+.+.+++++++.+++.+ . ..+++.+... +++|++ +|..+.
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~----~l~~~~~~~~ii~s~ts~~~-~-s~la~~~~~~~r~~g~h~~~p~~~~~~----- 151 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFA----QLCPVLKPEAILATNTSSIS-I-TRLASATDRPERFIGIHFMNPVPVMKL----- 151 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHH----HHHhhCCCCcEEEEcCCCCC-H-HHHHhhcCCcccEEEeeccCCcccCce-----
Confidence 9999999998776654 4455 77777888888885444333 2 2566655321 455555 232211
Q ss_pred cCceeEE--ecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 179 TGTLAIF--AGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 179 ~g~~~~~--~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
+.++ .+++++.++.+.++++.+|+ ++++++.+ -+++++++. ..+.|++.+.+..-.+++++...+.
T Consensus 152 ---vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~----~~~~ea~~~~~~g~~~~~~iD~~~~ 220 (292)
T PRK07530 152 ---VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL----PMINEAIYTLYEGVGSVEAIDTAMK 220 (292)
T ss_pred ---EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1222 24589999999999999999 77777644 334455543 4478888877664457888877775
Q ss_pred cCC
Q 018694 256 TGA 258 (351)
Q Consensus 256 ~~~ 258 (351)
.+.
T Consensus 221 ~g~ 223 (292)
T PRK07530 221 LGA 223 (292)
T ss_pred hCC
Confidence 444
No 72
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.65 E-value=3.6e-14 Score=128.00 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=118.0
Q ss_pred CeEEEEccChh--------------------hHHHHHHHHHCCCeEEEEeCCcccc-----hhHHhcCCcccCCHHHhhc
Q 018694 50 TRIGWIGTGVM--------------------GRSMCAHLLNAGYTVTVFNRTLSKA-----QPLLDIGAHLADSPHSLAS 104 (351)
Q Consensus 50 ~kI~iIG~G~m--------------------G~~ia~~L~~~g~~V~~~dr~~~~~-----~~~~~~g~~~~~~~~~~~~ 104 (351)
|||.|.|+|+. |..||.+|.++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 78999999987 8899999999999999999987654 3577789999999999999
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHH---HhcCCCcEEe---ccCCCCchhhc
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAA---ASSKNCSAID---APVSGGDRGAK 178 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~---~~~~~~~~v~---~pv~~~~~~~~ 178 (351)
++|+||+|+|++.++++++. ++.+.+.++++|||+||+.|.....+.+. +.++.+.+.+ +.+.+.+.+
T Consensus 81 ~ADVVIL~LPd~aaV~eVl~----GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~-- 154 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIAR----TIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH-- 154 (341)
T ss_pred CCCEEEEecCCHHHHHHHHH----HHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC--
Confidence 99999999999999999987 88888999999999999999887766555 3334444332 233333221
Q ss_pred cCceeEEecC--------CHHHHHHHHHHHHhhCc-eEEc
Q 018694 179 TGTLAIFAGG--------DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 179 ~g~~~~~~~g--------~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
...++.+. +++..+++.++.+..++ ++.+
T Consensus 155 --~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 155 --GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred --ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 11222221 78888999999999988 4443
No 73
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.64 E-value=1.1e-14 Score=128.57 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=118.0
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------CCc---ccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------GAH---LADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------g~~---~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+||| +|+||.+++..|.++|++|++++|++++.+.+.+. |+. ...+..+.+.++|+||+|+ +++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav-p~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV-PWD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC-CHH
Confidence 6899997 89999999999999999999999999887766542 211 1235677788999999999 888
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhH---------------HHHHHHHHhcCCCcEEec-cCCCCchh----h
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL---------------ASELSAAASSKNCSAIDA-PVSGGDRG----A 177 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~---------------~~~l~~~~~~~~~~~v~~-pv~~~~~~----~ 177 (351)
.+.+++. ++.+.+. +++||+++++.... .+.+++.++. +.+++.+ ++.+.... .
T Consensus 80 ~~~~~l~----~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~ 153 (219)
T TIGR01915 80 HVLKTLE----SLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDD 153 (219)
T ss_pred HHHHHHH----HHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCC
Confidence 8888888 7766554 58999999975421 2445555542 2566666 33332211 1
Q ss_pred ccCceeEEecCCHHHHHHHHHHHHhh-Cc-eEEcCCccHHHHHH
Q 018694 178 KTGTLAIFAGGDESVVQKLNPLFALM-GK-VNYMGGSGKGQFAK 219 (351)
Q Consensus 178 ~~g~~~~~~~g~~~~~~~v~~ll~~~-g~-~~~~g~~g~a~~~k 219 (351)
..+...+++|.++++.+.+.++.+.+ |+ .+++|+...+..+.
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e 197 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVE 197 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHH
Confidence 12333566666788899999999999 98 99999866655543
No 74
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.63 E-value=2.2e-14 Score=133.16 Aligned_cols=168 Identities=19% Similarity=0.343 Sum_probs=125.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCC--cccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+||+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|+ ....+.++.+.++|+||+|+ ++....+++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-p~~~~~~v~~ 84 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-PVGASGAVAA 84 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-CHHHHHHHHH
Confidence 4799999999999999999999985 89999999988877777664 24457778888999999999 6666777887
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch-hh-------ccCceeEEe---cCCHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR-GA-------KTGTLAIFA---GGDESV 192 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~-~~-------~~g~~~~~~---~g~~~~ 192 (351)
++.+.+.++.+|+++++......+.+.+.++ .+++|+.+ |+.|+.. +. ..+..++++ +++++.
T Consensus 85 ----~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~ 159 (307)
T PRK07502 85 ----EIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA 159 (307)
T ss_pred ----HHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence 7777788899999988876666655655543 46788887 8886542 11 123333333 347888
Q ss_pred HHHHHHHHHhhCc-eEEcCCccHHHHHHHHH
Q 018694 193 VQKLNPLFALMGK-VNYMGGSGKGQFAKLAN 222 (351)
Q Consensus 193 ~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~ 222 (351)
.+.+.++++.+|. +++++........-++.
T Consensus 160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s 190 (307)
T PRK07502 160 VARLTAFWRALGARVEEMDPEHHDLVLAITS 190 (307)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHh
Confidence 8999999999998 66766544443433333
No 75
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.63 E-value=1.9e-14 Score=132.65 Aligned_cols=239 Identities=18% Similarity=0.165 Sum_probs=155.4
Q ss_pred hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--------------cCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 59 VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--------------ADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 59 ~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--------------~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||+.+|..|.++|++|++++|+ ++.+.+++.|+.+ .+++++ ..++|+||+|| |..++++++.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~v-Ks~~~~~~l~ 77 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITV-KAYQTEEAAA 77 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEec-cchhHHHHHH
Confidence 48999999999999999999997 6677777665322 222333 45799999999 8889999999
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC----cEEeccCCC-Cch-hhccCceeEEecC-C--HHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC----SAIDAPVSG-GDR-GAKTGTLAIFAGG-D--ESVVQK 195 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~----~~v~~pv~~-~~~-~~~~g~~~~~~~g-~--~~~~~~ 195 (351)
.+.+.+.++++|+.+.|+ .+..+.+.+.++...+ .+..+-..+ +.. ....+. +..|. + .+..+.
T Consensus 78 ----~l~~~l~~~~~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~~~~~~~~ 150 (293)
T TIGR00745 78 ----LLLPLIGKNTKVLFLQNG-LGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGA--TKIGDYVGENEAVEA 150 (293)
T ss_pred ----HhHhhcCCCCEEEEccCC-CCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEecccc--EEEecCCCchHHHHH
Confidence 898988899999999998 4445667666643221 122221111 111 111122 22232 2 234566
Q ss_pred HHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCHH--HHH
Q 018694 196 LNPLFALMGK-VNYMGGSGKGQFAKLANQITIAT---------------------TMVGLVEGMVYAHKAGLNVE--LFL 251 (351)
Q Consensus 196 v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~Ea~~la~~~Gi~~~--~~~ 251 (351)
+.++|+..+. +....++-...|.|++.|...+. +..++.|+..++++.|++.+ .+.
T Consensus 151 l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 230 (293)
T TIGR00745 151 LAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVE 230 (293)
T ss_pred HHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 7777777676 66777899999999998875442 45668899999999997643 233
Q ss_pred HHHhcCC----CC-chhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 018694 252 NAISTGA----AG-SKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLK 317 (351)
Q Consensus 252 ~~~~~~~----~~-s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~ 317 (351)
+.+.... .. +.++ ..+.++... +++.+. +++++.++++|+++|.++.++++++...
T Consensus 231 ~~~~~~~~~~~~~~sSm~----~D~~~gr~t---Eid~i~---G~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 231 ELVRAVIRMTAENTSSML----QDLLRGRRT---EIDAIN---GAVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred HHHHHHHhcCCCCCChHH----HHHHcCCcc---hHHHhc---cHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 3332211 10 1111 111111111 233333 7899999999999999999999987654
No 76
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=5.3e-14 Score=129.05 Aligned_cols=190 Identities=17% Similarity=0.186 Sum_probs=131.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch-----------hHHhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-----------PLLDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-----------~~~~~g-------------~~~~~~~~~~~~ 104 (351)
|+||+|||+|.||..+|..|+.+|++|++||+++++++ .+.+.| +..+++.++ +.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 57899999999999999999999999999999988764 233333 233556554 78
Q ss_pred CCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCce
Q 018694 105 QSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTL 182 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~ 182 (351)
+||+||+|+|+...++ +++. ++.+++.+++++++.+++.+ . ..+.+.+.. ..+++.. |+.+.... ..
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~----~l~~~~~~~~il~s~ts~~~-~-~~la~~~~~-~~r~ig~h~~~P~~~~----~~ 150 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFA----QLDEIAKPEAILATNTSSLS-I-TELAAATKR-PDKVIGMHFFNPVPVM----KL 150 (282)
T ss_pred cCCeeeecccccHHHHHHHHH----HHHhhCCCCcEEEECCCCCC-H-HHHHHhhCC-CcceEEeeccCCcccC----cc
Confidence 9999999997767666 6666 77777888888866665533 2 367666643 2345554 44433322 11
Q ss_pred eEEe---cCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 183 AIFA---GGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 183 ~~~~---~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
..++ +.+++..+.+.++++.+|+ ++++++.. +.. ........++|++.+.+..-.+++++...+..+.
T Consensus 151 vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~-g~i-------~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 151 VEIIRGLATSDATHEAVEALAKKIGKTPVEVKNAP-GFV-------VNRILIPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc-ChH-------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 2233 2389999999999999999 77776522 111 1223455678988887766577888887776554
No 77
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=3.6e-14 Score=130.43 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=131.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-------------------------CCcccCCHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-------------------------GAHLADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-------------------------g~~~~~~~~~~~ 103 (351)
++||+|||+|.||..+|..|+.+|++|++||++++.++...+. ++..+++.++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 4789999999999999999999999999999998765544221 234577888888
Q ss_pred cCCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCc
Q 018694 104 SQSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGT 181 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~ 181 (351)
+++|+||+|+|...++ .+++. ++.+.+.++++|++.+++.+ ..++.+.+. ...+|+.. +..+. . ...
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~----~l~~~~~~~~ii~sntSt~~--~~~~~~~~~-~~~r~vg~Hf~~p~-~---~~~ 151 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYE----ELAKVAPEKTIFATNSSTLL--PSQFAEATG-RPEKFLALHFANEI-W---KNN 151 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHH----HHHhhCCCCCEEEECcccCC--HHHHHhhcC-CcccEEEEcCCCCC-C---cCC
Confidence 9999999999766544 45555 77777778887765544432 234555443 23345543 22211 1 123
Q ss_pred eeEEec---CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Q 018694 182 LAIFAG---GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTG 257 (351)
Q Consensus 182 ~~~~~~---g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~ 257 (351)
++.++. .++++.+.+.++++.+|+ ++.+.....+... + ......+.|++.+.+....+++++..++..+
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~---n----Ri~~~~~~ea~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYIL---N----SLLVPFLSAALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhH---H----HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 445543 388999999999999999 6666532222221 1 2244567899988887768899988887665
Q ss_pred CC
Q 018694 258 AA 259 (351)
Q Consensus 258 ~~ 259 (351)
.+
T Consensus 225 ~g 226 (287)
T PRK08293 225 TG 226 (287)
T ss_pred cC
Confidence 53
No 78
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.61 E-value=2.7e-15 Score=125.47 Aligned_cols=136 Identities=20% Similarity=0.279 Sum_probs=105.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC--------------CcccCCHHHhhcCCCEEEEecCCh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG--------------AHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
||+|||+|+||+++|..|+++|++|++|.|+++.++.+.+.+ +.++++++++++++|+||+++ +.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav-Ps 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV-PS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc-cH
Confidence 799999999999999999999999999999998887776642 446788999999999999999 88
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-h----hHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHH
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-P----SLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDES 191 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~----~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~ 191 (351)
+..+++++ ++.+++.+++.+|.++.|. . ...+.+.+.++...+.++.+|.+..++.....+...+++.+.+
T Consensus 80 ~~~~~~~~----~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVLE----QLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHHH----HHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHHH----HHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 88999999 9999999999999999874 1 2345566666655578889999998888777766666666654
No 79
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.61 E-value=2.6e-14 Score=128.21 Aligned_cols=225 Identities=20% Similarity=0.203 Sum_probs=159.7
Q ss_pred CCeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 72 GYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 72 g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
.++|++++|++++.+.+.++ |+....+..++++++|+||+|| +|+++++++. ++.+.+.++++||+++++.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaV-kP~~i~~vl~----~l~~~~~~~~~ivS~~agi~-- 81 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAV-KPQDLEEVLS----ELKSEKGKDKLLISIAAGVT-- 81 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEe-CHHHHHHHHH----HHhhhccCCCEEEEecCCCC--
Confidence 36899999999998887665 7777888889989999999999 7999999998 78776677889999999866
Q ss_pred HHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCceEEcCCc--cHHHHHHHHHHHH
Q 018694 151 ASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGKVNYMGGS--GKGQFAKLANQIT 225 (351)
Q Consensus 151 ~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~~~~~g~~--g~a~~~kl~~n~~ 225 (351)
.+.+.+.+. .+..++++ |+.....+ .|...+..+. +++..+.++++|+.+|.++++.+. .....+ ...
T Consensus 82 ~~~l~~~~~-~~~~ivR~mPn~~~~~~--~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~tal----sgs 154 (245)
T TIGR00112 82 LEKLSQLLG-GTRRVVRVMPNTPAKVG--AGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTAL----SGS 154 (245)
T ss_pred HHHHHHHcC-CCCeEEEECCChHHHHh--CCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhh----ccC
Confidence 456766664 23456766 77654443 3444444433 567788999999999997776542 111111 111
Q ss_pred HHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhhh----hhhhcccCCCCCccchhhHHHHHHHHHHHHHhcC
Q 018694 226 IATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLDL----HGSRILKRDFEPGFFVNHFVKDLGICLKECQNMG 300 (351)
Q Consensus 226 ~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g 300 (351)
.-.++..+.|++. .+.+.|++++++.+++.....|+..+-. ....+.+.-.+||.+... .++..++.|
T Consensus 155 gPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~-------gl~~Le~~~ 227 (245)
T TIGR00112 155 GPAYVFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIA-------GLAVLEEKG 227 (245)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHH-------HHHHHHHCC
Confidence 1125566666666 7899999999999998887755433321 223344455667766543 557788889
Q ss_pred CCCcHHHHHHHHHHHHH
Q 018694 301 LALPGLALAQQLYLSLK 317 (351)
Q Consensus 301 v~~p~~~~~~~l~~~~~ 317 (351)
+..-+.+++.+..+++.
T Consensus 228 ~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 228 VRGAVIEAVEAAVRRSR 244 (245)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 99888888887777664
No 80
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.57 E-value=4.6e-15 Score=113.50 Aligned_cols=90 Identities=29% Similarity=0.464 Sum_probs=78.2
Q ss_pred eEEEEccChhhHHHHHHHHHCC---CeEEEE-eCCcccchhHHhc-CCcccC-CHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAG---YTVTVF-NRTLSKAQPLLDI-GAHLAD-SPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g---~~V~~~-dr~~~~~~~~~~~-g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||+|||+|+||.+|+..|.+.| ++|.++ +|++++.+.+.++ +..... +..++++++|+||+|| +++++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav-~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAV-KPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEE-CHHHHHHHHH
Confidence 7999999999999999999999 899955 9999999888766 556565 8999999999999999 9999999999
Q ss_pred CCCCCcccCCCCCcEEEecCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
++ ....+++++||++++
T Consensus 80 ----~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 ----EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp ----HH-HHHHTTSEEEEESTT
T ss_pred ----HH-hhccCCCEEEEeCCC
Confidence 78 667899999998864
No 81
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.56 E-value=2e-13 Score=125.94 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=129.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch-hHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh-hCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-PLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL-LHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~-~~~~ 127 (351)
+||+|||+|+||.++|.+|.+.|++|++++++.++.. ...+.|+... +.+++++++|+|++|+| +....+++ .
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVP-d~~~~~V~~~--- 92 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLP-DEVQAEVYEE--- 92 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCC-HHHHHHHHHH---
Confidence 7899999999999999999999999999887755433 3334477654 88999999999999995 55558888 5
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch-----hhccCceeEE-ecCC--HHHHHHHHH
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR-----GAKTGTLAIF-AGGD--ESVVQKLNP 198 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~-----~~~~g~~~~~-~~g~--~~~~~~v~~ 198 (351)
++.+.+.++++|+ .+.+..-. ... ..+..++.++.. |..++.. ....|...++ +..+ .+..+.+..
T Consensus 93 -~I~~~Lk~g~iL~-~a~G~~i~--~~~-~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~ 167 (330)
T PRK05479 93 -EIEPNLKEGAALA-FAHGFNIH--FGQ-IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA 167 (330)
T ss_pred -HHHhcCCCCCEEE-ECCCCChh--hce-eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence 7888888888884 55443221 222 222346666655 7776651 1223444455 4444 788899999
Q ss_pred HHHhhCc-e---EEc--CC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018694 199 LFALMGK-V---NYM--GG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFL 251 (351)
Q Consensus 199 ll~~~g~-~---~~~--g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 251 (351)
++..+|. . +.+ .+ .....+ .- ...+..+...++..++......|++++.++
T Consensus 168 l~~aiG~~~~g~~~ttf~~e~~~dl~-ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 168 YAKGIGGTRAGVIETTFKEETETDLF-GE-QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHcCCCccceeeeeecccccccch-hh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999997 2 211 11 111111 11 344555666777788889999999997654
No 82
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.56 E-value=5.8e-14 Score=119.60 Aligned_cols=161 Identities=21% Similarity=0.177 Sum_probs=112.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhc-CCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDI-GAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~-g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
||+|+|+|+|+||.+++..|+++||+|++.+|+.+ +.+...+. +.. .-.+++++++.+|+||++| +...+.+++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAV-P~~a~~~v~~- 78 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAV-PFEAIPDVLA- 78 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEec-cHHHHHhHHH-
Confidence 68999999999999999999999999999966544 44333332 222 2357788888999999999 7788888888
Q ss_pred CCCCcccCCCCCcEEEecCCCC---------------hhHHHHHHHHHhcCCCcEEec------cCCCCchhhccCceeE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSE---------------PSLASELSAAASSKNCSAIDA------PVSGGDRGAKTGTLAI 184 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~---------------~~~~~~l~~~~~~~~~~~v~~------pv~~~~~~~~~g~~~~ 184 (351)
++...+. +++|||.++.. -..++.+++.++. .+++.+ ...............+
T Consensus 79 ---~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~--akVVkAFn~i~a~~l~~~~~~~~~~~v~ 152 (211)
T COG2085 79 ---ELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG--AKVVKAFNTIPAAVLADLAKPGGRRDVL 152 (211)
T ss_pred ---HHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCC--cchhhhhcccCHHHhccCCCcCCceeEE
Confidence 7777665 89999999841 1234455555543 234333 1111111111123345
Q ss_pred EecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHH
Q 018694 185 FAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQF 217 (351)
Q Consensus 185 ~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~ 217 (351)
++|.|.++.+.+.++.+.+|. .+.+|....+.-
T Consensus 153 vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~ 186 (211)
T COG2085 153 VAGDDAEAKAVVAELAEDIGFRPLDAGPLENARI 186 (211)
T ss_pred EecCcHHHHHHHHHHHHhcCcceeeccccccccc
Confidence 566688899999999999998 888887644444
No 83
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.55 E-value=5.4e-13 Score=138.02 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=130.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhcCCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDIGAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
..||+|||+|.||.++++.|.+.| ++|++||+++++.+.+.+.|+. ...+.++.+.++|+||+|+ ++..+++++.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilav-p~~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAV-PVLAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECC-CHHHHHHHHH
Confidence 378999999999999999999998 4899999999887777766754 3456777888999999999 6778899998
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch--------hhccCceeEEec---CCHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR--------GAKTGTLAIFAG---GDESV 192 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~--------~~~~g~~~~~~~---g~~~~ 192 (351)
.+.+.+.++.+|+++++......+.+.+.+....++|+.. |+.|+.. ....+..++++. .+++.
T Consensus 82 ----~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 82 ----DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred ----HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 8888888888999999887777777777765445666654 7775542 111233334443 37778
Q ss_pred HHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 193 VQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEG 236 (351)
Q Consensus 193 ~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea 236 (351)
.+.+.++|+.+|. ++++++.......-++.... ..+...+.|+
T Consensus 158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~p-h~~~~~l~~~ 201 (735)
T PRK14806 158 LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLP-HLLAFSLVDQ 201 (735)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchH-HHHHHHHHHH
Confidence 8999999999998 66776543333332333222 2234444454
No 84
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.53 E-value=7.5e-13 Score=115.01 Aligned_cols=243 Identities=19% Similarity=0.243 Sum_probs=177.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC----eEEEEeCCcccchh-HHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY----TVTVFNRTLSKAQP-LLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~----~V~~~dr~~~~~~~-~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
|||||||.|+|..++++.+...|. ++..+..+...... ++..|...+.+..+.++.+|++++|| ++..+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHhh
Confidence 689999999999999999999886 56666653333333 55668887777788889999999999 9999999999
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCceeEEecC--CHHHHHHHHHHHH
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFA 201 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~ 201 (351)
++...+..+++++++..+.. ...+.+.+. ...++++. |+.+...+. +..++..+. ..+..+.++++++
T Consensus 80 ----~~~~~~~~~~iivS~aaG~t--l~~l~~~l~-~~~rviRvmpNtp~~v~e--g~sv~~~g~~~~~~D~~l~~~ll~ 150 (267)
T KOG3124|consen 80 ----EIKPKVSKGKIIVSVAAGKT--LSSLESKLS-PPTRVIRVMPNTPSVVGE--GASVYAIGCHATNEDLELVEELLS 150 (267)
T ss_pred ----cCccccccceEEEEEeeccc--HHHHHHhcC-CCCceEEecCCChhhhhc--CcEEEeeCCCcchhhHHHHHHHHH
Confidence 78777788999999998754 335666665 34566765 666655543 443332222 5566689999999
Q ss_pred hhCceEEcCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhcCCCCchhhhhh-h--
Q 018694 202 LMGKVNYMGG---------SGKGQFAKLANQITIATTMVGLVEGMV-YAHKAGLNVELFLNAISTGAAGSKSLDLH-G-- 268 (351)
Q Consensus 202 ~~g~~~~~g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~~~s~~~~~~-~-- 268 (351)
.+|.+..+.+ .|++.+ +...+.|+++ -+.+.|++++..+++..+...|+..+-.. .
T Consensus 151 ~vG~~~evpE~~iDavTgLsGSgPA-----------y~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qH 219 (267)
T KOG3124|consen 151 AVGLCEEVPEKCIDAVTGLSGSGPA-----------YVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQH 219 (267)
T ss_pred hcCcceeCcHHhhhHHhhccCCcHH-----------HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCC
Confidence 9998554443 355555 6677788888 78999999999999988887654433222 2
Q ss_pred -hhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 018694 269 -SRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHG 320 (351)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g 320 (351)
-.+.+...+||.+.- +.+...|+-|++.-++.++.+.-.++++.+
T Consensus 220 P~~Lkd~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 220 PAQLKDDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred cHHHhCCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 233334456766442 356788899999999999999888888764
No 85
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.53 E-value=1.6e-13 Score=126.70 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=128.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCC-cccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT-LSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~-~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+||+|||+|+||.+++..|.+.|++|+++++. +++.+.+.+.|+... +..++++++|+|++|+|+..+...+..
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~---- 78 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEA---- 78 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHH----
Confidence 68999999999999999999999998776554 445566666687654 588888999999999955436666666
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCch-------hhccCceeEE-ecC--CHHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDR-------GAKTGTLAIF-AGG--DESVVQKLN 197 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~-------~~~~g~~~~~-~~g--~~~~~~~v~ 197 (351)
++.+.+.++. +|+++.+..- ..+...++ .++.++.. |+.++.. + .|...++ +.. +.+..+.+.
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i--~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G--~G~~~l~a~~~~~~~~~~~~~~ 152 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI--HFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEG--FGVPTLIAVEQDPTGEAMAIAL 152 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH--hhccccCC-CCCcEEEECCCCCcHHHHHHhhcC--CCeeEEEEecCCCCHHHHHHHH
Confidence 6777776665 7778877542 23443443 45666665 8887763 4 3443443 333 667788999
Q ss_pred HHHHhhCce-------E---EcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 198 PLFALMGKV-------N---YMGG--SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 198 ~ll~~~g~~-------~---~~g~--~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
.+|+.+|.. . .+.+ .+...+ ++..... ++..+.|++ .+.|++++.++.+.....
T Consensus 153 ~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~--l~Gs~pa--~v~~~~eal---v~~G~~~e~A~~~~~~~~ 218 (314)
T TIGR00465 153 AYAKAIGGGRAGVLETTFKEETESDLFGEQAV--LCGGLTA--LIKAGFDTL---VEAGYQPELAYFETVHEL 218 (314)
T ss_pred HHHHHcCCCccceeechhHhhhhHHhcCcchh--HHhHHHH--HHHHHHHHH---HHcCCCHHHHHHHHHHHH
Confidence 999999984 2 2221 122111 1111111 444455655 799999999888765554
No 86
>PLN02712 arogenate dehydrogenase
Probab=99.52 E-value=9.7e-13 Score=133.06 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=114.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc-CCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS-QSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
..|||+|||+|.||..+|+.|.+.|++|++|+|+... +...+.|+....+.++++. ++|+||+|| ++..+.+++.
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILav-P~~~~~~vi~-- 443 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCT-SILSTEKVLK-- 443 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECC-ChHHHHHHHH--
Confidence 4589999999999999999999999999999998543 4444557766778888775 589999999 5788888888
Q ss_pred CCCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccC--cee-----EEecCCHHH---HH
Q 018694 127 SSGALS-GLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTG--TLA-----IFAGGDESV---VQ 194 (351)
Q Consensus 127 ~~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g--~~~-----~~~~g~~~~---~~ 194 (351)
++.. .++++++|+|++++.....+.+.+.++ .+..|+.. |++|..... .| ... .+++++.+. .+
T Consensus 444 --~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~~-~G~~~~~~lf~~~~v~~~~~~~~~~~ 519 (667)
T PLN02712 444 --SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESGK-NGWNNLAFVFDKVRIGSDDRRVSRCD 519 (667)
T ss_pred --HHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccccc-cchhhhhhhccCcEeCCCcchHHHHH
Confidence 6654 567899999999886544555555543 46778854 999877541 11 011 222344434 44
Q ss_pred HHHHHHHhhCc-eEEcCCcc
Q 018694 195 KLNPLFALMGK-VNYMGGSG 213 (351)
Q Consensus 195 ~v~~ll~~~g~-~~~~g~~g 213 (351)
.+.++++.+|. ++.+....
T Consensus 520 ~l~~l~~~lGa~vv~ms~ee 539 (667)
T PLN02712 520 SFLDIFAREGCRMVEMSCAE 539 (667)
T ss_pred HHHHHHHHcCCEEEEeCHHH
Confidence 55688888998 66665533
No 87
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.50 E-value=1e-13 Score=118.71 Aligned_cols=146 Identities=25% Similarity=0.290 Sum_probs=94.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--------------------CCcccCCHHHhhcCCCEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--------------------GAHLADSPHSLASQSDVV 109 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~DiI 109 (351)
|||+|||+|.+|..+|..|++.||+|++||.++++++.+++. .+...++.++++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 799999999999999999999999999999999987666542 245677888888999999
Q ss_pred EEecCChh---------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHH-HHhc-----CCCcEEeccCC---
Q 018694 110 FSIVGYPS---------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA-AASS-----KNCSAIDAPVS--- 171 (351)
Q Consensus 110 i~~vp~~~---------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~-~~~~-----~~~~~v~~pv~--- 171 (351)
|+|||.+. .+++++. .+.+.+.++++||.-||..|++.+++.. .+.. ....+..+|-+
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~----~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~ 156 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIE----SIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE 156 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHH----HHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred EEecCCCccccCCccHHHHHHHHH----HHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence 99997553 4677888 8888899999999999999999995544 3332 13355666644
Q ss_pred CCchhhccCceeEEecC-CHHHHHHHHHH
Q 018694 172 GGDRGAKTGTLAIFAGG-DESVVQKLNPL 199 (351)
Q Consensus 172 ~~~~~~~~g~~~~~~~g-~~~~~~~v~~l 199 (351)
|.........--++.|. ++...+.++++
T Consensus 157 G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 157 GRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp TSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 22222222222344444 44444466553
No 88
>PLN02712 arogenate dehydrogenase
Probab=99.48 E-value=2.6e-12 Score=129.95 Aligned_cols=158 Identities=21% Similarity=0.278 Sum_probs=116.1
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.+|||+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....+.++++ .++|+||+|| ++..+.+++.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLav-P~~~~~~vl~-- 126 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCT-SIISTENVLK-- 126 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcC-CHHHHHHHHH--
Confidence 4589999999999999999999999999999998543 444455777777888855 5699999999 6788999998
Q ss_pred CCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchh--hccCceeEEec---C-CH---HHHHH
Q 018694 127 SSGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRG--AKTGTLAIFAG---G-DE---SVVQK 195 (351)
Q Consensus 127 ~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~--~~~g~~~~~~~---g-~~---~~~~~ 195 (351)
++. +.+.++++|+|+++......+.+.+.++ .+..|+.. |++|.... ...+...++.+ + +. +..+.
T Consensus 127 --~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 127 --SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred --hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 775 5678899999999887655555666554 46678877 99987632 11233233332 2 22 33556
Q ss_pred HHHHHHhhCc-eEEcCCc
Q 018694 196 LNPLFALMGK-VNYMGGS 212 (351)
Q Consensus 196 v~~ll~~~g~-~~~~g~~ 212 (351)
+.++++.+|. ++.+...
T Consensus 204 l~~l~~~lGa~v~~ms~e 221 (667)
T PLN02712 204 FLEVFEREGCKMVEMSCT 221 (667)
T ss_pred HHHHHHHcCCEEEEeCHH
Confidence 6799999998 6666543
No 89
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.44 E-value=7.9e-13 Score=112.87 Aligned_cols=149 Identities=22% Similarity=0.274 Sum_probs=96.0
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c-------------CCcccCCHHHhhcCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I-------------GAHLADSPHSLASQS 106 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~~ 106 (351)
||+|||+|.||..||..++.+|++|++||++++.++...+ . .+...++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999886533221 1 256678888888 99
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEe
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFA 186 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~ 186 (351)
|+||.|+|....++.-+.. ++...+.+++++.+.+++.+ ..++.+.+.. .-+++..-.+..+.. ..++.++
T Consensus 80 dlViEai~E~l~~K~~~~~---~l~~~~~~~~ilasnTSsl~--i~~la~~~~~-p~R~ig~Hf~~P~~~---~~lVEvv 150 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFA---ELDEICPPDTILASNTSSLS--ISELAAALSR-PERFIGMHFFNPPHL---MPLVEVV 150 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHH---HHHCCS-TTSEEEE--SSS---HHHHHTTSST-GGGEEEEEE-SSTTT-----EEEEE
T ss_pred heehhhccccHHHHHHHHH---HHHHHhCCCceEEecCCCCC--HHHHHhccCc-CceEEEEeccccccc---CceEEEe
Confidence 9999999988877765553 66677788888887666544 3456655542 223333311111111 1334444
Q ss_pred cC---CHHHHHHHHHHHHhhCc-eEEc
Q 018694 187 GG---DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 187 ~g---~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
.+ +++..+.+..+++.+|+ ++.+
T Consensus 151 ~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 151 PGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp E-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 33 88999999999999998 5554
No 90
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=3.1e-12 Score=118.63 Aligned_cols=179 Identities=22% Similarity=0.237 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHCCCeEEEEeCCcccch-------h-----------HHhcC-------------CcccCC--HHHhhcCC
Q 018694 60 MGRSMCAHLLNAGYTVTVFNRTLSKAQ-------P-----------LLDIG-------------AHLADS--PHSLASQS 106 (351)
Q Consensus 60 mG~~ia~~L~~~g~~V~~~dr~~~~~~-------~-----------~~~~g-------------~~~~~~--~~~~~~~~ 106 (351)
||..||..++.+|++|++||++++..+ . +.+.| +....+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 799999999999999999999985311 1 11112 333333 55778999
Q ss_pred CEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc----CCCcEEeccCCCCchhhccCce
Q 018694 107 DVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS----KNCSAIDAPVSGGDRGAKTGTL 182 (351)
Q Consensus 107 DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~----~~~~~v~~pv~~~~~~~~~g~~ 182 (351)
|+||.|+|...+++..+.. ++...+.+++++.+ |+++....++++.+.. .|.+|.+.|..- .+
T Consensus 81 D~ViEav~E~~~~K~~~f~---~l~~~~~~~~ilaS--ntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~--------~l 147 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALR---WLGRHVDADAIIAS--TTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM--------PL 147 (314)
T ss_pred CEEEECCcCCHHHHHHHHH---HHHhhCCCCcEEEE--ccccCCHHHHHhhcCCcccEEEEecCCccccC--------ce
Confidence 9999999999999888874 56667778877744 4444446677777642 255666554331 23
Q ss_pred eEEec---CCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 183 AIFAG---GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 183 ~~~~~---g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
+.+++ +++++.+.+.++++.+|+ ++++++.+ + +++.......+.|++.++++.+++++++.+++..+.
T Consensus 148 vEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~ 219 (314)
T PRK08269 148 VEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGF 219 (314)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 33333 388999999999999999 88888754 2 234555677899999999999999999999987765
Q ss_pred C
Q 018694 259 A 259 (351)
Q Consensus 259 ~ 259 (351)
+
T Consensus 220 G 220 (314)
T PRK08269 220 G 220 (314)
T ss_pred C
Confidence 4
No 91
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=1.8e-11 Score=115.13 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=114.0
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
+||+|||. |.||.++|+.|.+. |++|++||++.+ ...++++.+.++|+||+|+ |...+.+++.
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilav-Pv~~~~~~l~--- 69 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSA-PIRHTAALIE--- 69 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeC-CHHHHHHHHH---
Confidence 68999999 99999999999864 889999998521 1346677889999999999 7788888888
Q ss_pred CCcccC---CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCc-hhhccCceeEEecC-CHHHHHHHHHHHH
Q 018694 128 SGALSG---LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGD-RGAKTGTLAIFAGG-DESVVQKLNPLFA 201 (351)
Q Consensus 128 ~~i~~~---l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~-~~~~~g~~~~~~~g-~~~~~~~v~~ll~ 201 (351)
++.+. ++++++|.|+++......+.+. ..+..|+.+ |++|++ ....++..++++.+ ..+..+.++++++
T Consensus 70 -~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~ 144 (370)
T PRK08818 70 -EYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS 144 (370)
T ss_pred -HHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence 77764 7899999999998755544442 235678887 999875 34445666666654 4444678899999
Q ss_pred hhCc-eEEcCCccHHHHHHHH
Q 018694 202 LMGK-VNYMGGSGKGQFAKLA 221 (351)
Q Consensus 202 ~~g~-~~~~g~~g~a~~~kl~ 221 (351)
.+|. ++.+.....-..+..+
T Consensus 145 ~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 145 ALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred HcCCEEEEcCHHHHHHHHHHH
Confidence 9998 6666655444444444
No 92
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.39 E-value=3.9e-13 Score=107.19 Aligned_cols=109 Identities=25% Similarity=0.335 Sum_probs=73.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEE-EeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTV-FNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~-~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
-+||+|||+|++|..++..|.++||+|.. |+|+++..+.+... +-....++++.+.++|++|++| ++..+.+++.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav-pDdaI~~va~-- 86 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV-PDDAIAEVAE-- 86 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S--CCHHHHHHH--
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe-chHHHHHHHH--
Confidence 38999999999999999999999999875 47887766666554 3344557788899999999999 7778999999
Q ss_pred CCCcccC--CCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 127 SSGALSG--LRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 127 ~~~i~~~--l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
++... ..++++|+++|-... .++.+-+.+.|...
T Consensus 87 --~La~~~~~~~g~iVvHtSGa~~---~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 87 --QLAQYGAWRPGQIVVHTSGALG---SDVLAPARERGAIV 122 (127)
T ss_dssp --HHHCC--S-TT-EEEES-SS-----GGGGHHHHHTT-EE
T ss_pred --HHHHhccCCCCcEEEECCCCCh---HHhhhhHHHCCCeE
Confidence 88876 779999999996543 33334444556543
No 93
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.38 E-value=2.3e-11 Score=110.90 Aligned_cols=192 Identities=18% Similarity=0.174 Sum_probs=128.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-----------HhcC-------------CcccCCHHHhhc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-----------LDIG-------------AHLADSPHSLAS 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 104 (351)
.+||+|||+|.||+.||..++.+|++|+++|++++.++.. .++| +...+++. .+.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 5799999999999999999999889999999997654332 1112 23333443 578
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAI 184 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~ 184 (351)
+||+||.+++...+++.-+.. ++.....+++++-+-+++.+. ..+++.... .-+++..-.+..+.- ..++.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~---~l~~~~~~~aIlASNTSsl~i--t~ia~~~~r-per~iG~HFfNP~~~---m~LVE 152 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFA---ELEALAKPDAILASNTSSLSI--TELAEALKR-PERFIGLHFFNPVPL---MPLVE 152 (307)
T ss_pred cCCEEEEeccccHHHHHHHHH---HHHhhcCCCcEEeeccCCCCH--HHHHHHhCC-chhEEEEeccCCCCc---ceeEE
Confidence 999999999998888766662 555566677776665555443 355555532 223333211111111 24555
Q ss_pred EecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 018694 185 FAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAA 259 (351)
Q Consensus 185 ~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~ 259 (351)
++.| ++++.+.+.++.+.+|+ ++...+ .|. .. | ......+.|++.+......+++++..+++.+.+
T Consensus 153 vI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGF--i~---N----Ril~~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 153 VIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGF--IV---N----RLLAALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCce--eh---H----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 6665 78999999999999999 443344 333 21 1 223455788888888888999999999887664
No 94
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.33 E-value=7.8e-11 Score=120.74 Aligned_cols=191 Identities=14% Similarity=0.079 Sum_probs=128.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHH-----------hc-------------CCcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL-----------DI-------------GAHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~~~~~~ 103 (351)
...||+|||+|.||..||..++.+|++|++||++++.++... ++ .+...++.+ .+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 390 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GF 390 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence 357899999999999999999999999999999988654321 11 144455664 46
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCcee
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLA 183 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~ 183 (351)
++||+||.|+|...+++.-+.. ++...+.+++++.+.+++.+ ..++++.+.. .-+++..-.+..+.. -.++
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~---~l~~~~~~~~ilasNTSsl~--i~~la~~~~~-p~r~~g~Hff~P~~~---~~lV 461 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLA---EVEQKVREDTILASNTSTIS--ISLLAKALKR-PENFCGMHFFNPVHR---MPLV 461 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHH---HHHhhCCCCcEEEEcCCCCC--HHHHHhhcCC-CccEEEEecCCcccc---cceE
Confidence 8999999999988888766663 66677778877776665544 3366666543 223443322211111 1334
Q ss_pred EEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 184 IFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 184 ~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
.++.+ ++++.+.+..++..+|+ ++.+.+ .|. . .|=+ ...++.|++.+.+. |.+++++..++..+.
T Consensus 462 Evv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf--v----~nRi---~~~~~~ea~~lv~~-Ga~~e~ID~a~~~~~ 531 (715)
T PRK11730 462 EVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF--F----VNRV---LFPYFAGFSQLLRD-GADFRQIDKVMEKQF 531 (715)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch--h----HHHH---HHHHHHHHHHHHHc-CCCHHHHHHHHHhhC
Confidence 44444 78999999999999999 666655 332 2 2211 33446788777664 489988888876544
No 95
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.32 E-value=1e-10 Score=119.75 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=129.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c-------------CCcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I-------------GAHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~ 103 (351)
...||+|||+|.||..||..++.+|++|+++|++++.++...+ + .+...++.+ .+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 390 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GF 390 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence 4578999999999999999999999999999999886543211 1 244455553 46
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCcee
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLA 183 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~ 183 (351)
++||+||.|++...+++.-+.. ++...+.+++++.+.+++.+ ..++++.+..+ -+++..-.+..... -.++
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~---~l~~~~~~~~ilasnTS~l~--i~~ia~~~~~p-~r~ig~Hff~P~~~---~~lv 461 (714)
T TIGR02437 391 DNVDIVVEAVVENPKVKAAVLA---EVEQHVREDAILASNTSTIS--ISLLAKALKRP-ENFCGMHFFNPVHR---MPLV 461 (714)
T ss_pred cCCCEEEEcCcccHHHHHHHHH---HHHhhCCCCcEEEECCCCCC--HHHHHhhcCCc-ccEEEEecCCCccc---CceE
Confidence 8999999999988888766653 67677778877776665544 33666655432 23433311111111 1345
Q ss_pred EEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 018694 184 IFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGA 258 (351)
Q Consensus 184 ~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 258 (351)
.++.+ ++++.+.+..++..+|+ ++.+.+ ..+.. .|=+ ....+.|+..+.+ .|.+++++..++..+.
T Consensus 462 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGfi----~NRl---~~~~~~ea~~l~~-eG~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 462 EVIRGEKSSDETIATVVAYASKMGKTPIVVND-CPGFF----VNRV---LFPYFGGFSKLLR-DGADFVRIDKVMEKQF 531 (714)
T ss_pred eecCCCCCCHHHHHHHHHHHHHcCCEEEEeCC-cccch----HHHH---HHHHHHHHHHHHH-CCCCHHHHHHHHHhcC
Confidence 55544 78999999999999999 666665 22222 2222 3345678888765 5689999988876544
No 96
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.31 E-value=2.8e-10 Score=116.38 Aligned_cols=189 Identities=18% Similarity=0.126 Sum_probs=126.9
Q ss_pred CCCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHH-----------hc-------------CCcccCCHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLL-----------DI-------------GAHLADSPHSL 102 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~~~~~ 102 (351)
.+.||+|||+|.||..||..++ .+|++|++||++++.++... ++ .+...++.+ .
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-G 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-H
Confidence 4578999999999999999998 58999999999987543321 11 244556664 5
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCce
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTL 182 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~ 182 (351)
+++||+||.|+|...+++.-+.. ++...+.+++++.+.+++.+ ..++++.+..+ -+++..-.+..+.. ..+
T Consensus 382 ~~~adlViEav~E~l~~K~~v~~---~l~~~~~~~~ilasnTS~l~--i~~la~~~~~p-~r~~g~HffnP~~~---~~l 452 (699)
T TIGR02440 382 FKDVDIVIEAVFEDLALKHQMVK---DIEQECAAHTIFASNTSSLP--IGQIAAAASRP-ENVIGLHYFSPVEK---MPL 452 (699)
T ss_pred hccCCEEEEeccccHHHHHHHHH---HHHhhCCCCcEEEeCCCCCC--HHHHHHhcCCc-ccEEEEecCCcccc---Cce
Confidence 68999999999988888765553 66677778877776665544 33666665432 23443311111111 134
Q ss_pred eEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 183 AIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 183 ~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
+.++.+ ++++.+.+..+++.+|+ ++.+.+. .+.. ++ ......+.|++.+.+ .|++++++...+.
T Consensus 453 VEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~-pGfi---~n----Rl~~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 453 VEVIPHAGTSEQTIATTVALAKKQGKTPIVVADK-AGFY---VN----RILAPYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccc-cchH---HH----HHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 555544 78999999999999999 6666652 2222 11 223456788887766 5678888887774
No 97
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.29 E-value=1e-10 Score=105.50 Aligned_cols=270 Identities=14% Similarity=0.112 Sum_probs=169.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CC-----eEEEEeCCcccch---hHHh----c--------------CCcccCCHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GY-----TVTVFNRTLSKAQ---PLLD----I--------------GAHLADSPH 100 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~-----~V~~~dr~~~~~~---~~~~----~--------------g~~~~~~~~ 100 (351)
..||+|||.|+||++||+.+.+. ++ +|..|-+....-. .+.+ . ++...+|+.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 36899999999999999998753 12 5777755432211 1111 1 255678899
Q ss_pred HhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh---------HHHHHHHHHhcCCCcEEeccCC
Q 018694 101 SLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS---------LASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 101 ~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~---------~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
+++.++|+++..+ |.+.+.++++ ++..+++++...|+++.|... .++.+.+.+. -.+.++.+|++
T Consensus 101 ea~~dADilvf~v-PhQf~~~ic~----~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNi 174 (372)
T KOG2711|consen 101 EAAKDADILVFVV-PHQFIPRICE----QLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANI 174 (372)
T ss_pred HHhccCCEEEEeC-ChhhHHHHHH----HHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCch
Confidence 9999999999999 8888999999 999999999999999986331 2333333332 34568888888
Q ss_pred CCchhhccCceeEEecCCHHH-HHHHHHHHHhhCc-eEEcCCc-----------------cHHHHHHHHHHHHHHHHHHH
Q 018694 172 GGDRGAKTGTLAIFAGGDESV-VQKLNPLFALMGK-VNYMGGS-----------------GKGQFAKLANQITIATTMVG 232 (351)
Q Consensus 172 ~~~~~~~~g~~~~~~~g~~~~-~~~v~~ll~~~g~-~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~ 232 (351)
..........-.-+.+.++.. -..+..+|+.-.+ +..+.+. |....+.+.+|.-.+.+...
T Consensus 175 A~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~G 254 (372)
T KOG2711|consen 175 ASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLG 254 (372)
T ss_pred HHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhh
Confidence 887766554433444443333 2347778876665 3333332 66677777788888888888
Q ss_pred HHHHHHHHHHc-CC-CHHHHHHHHhcCCCCchhhh----hhhhhcccCCCCCccchhh------------HHHHHHHHHH
Q 018694 233 LVEGMVYAHKA-GL-NVELFLNAISTGAAGSKSLD----LHGSRILKRDFEPGFFVNH------------FVKDLGICLK 294 (351)
Q Consensus 233 ~~Ea~~la~~~-Gi-~~~~~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~~------------~~kd~~~~~~ 294 (351)
+.|+..+++.. .- .++++.+.-...+.-...+. .+.+.+..+ |-++++ .....+.+.+
T Consensus 255 l~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafakt----gk~~~~~E~ell~Gq~~QG~~Ta~~Vy~ 330 (372)
T KOG2711|consen 255 LLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKT----GKSLEELEKELLNGQKLQGPATAKEVYE 330 (372)
T ss_pred HHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHc----CCCHHHHHHHhhCCCcccCcHHHHHHHH
Confidence 88988876652 22 33332222111100000000 001111111 011111 1223357889
Q ss_pred HHHhcCC--CCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 018694 295 ECQNMGL--ALPGLALAQQLYLSLKAHGEGNLGTQALILALER 335 (351)
Q Consensus 295 ~a~~~gv--~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~ 335 (351)
++++.++ ..|++.++|+++. ++.+..++++.++.
T Consensus 331 ~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 331 LLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred HHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 9999999 7899999998874 44578888887774
No 98
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.28 E-value=4.2e-10 Score=115.48 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=126.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c-------------CCcccCCHHHhh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I-------------GAHLADSPHSLA 103 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~ 103 (351)
...||+|||+|.||..||..++.+|++|+++|++++.++...+ + .+..+++.+ .+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 412 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GF 412 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 4578999999999999999999999999999999886544211 1 244456665 46
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCcee
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLA 183 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~ 183 (351)
.+||+||.|++...+++.-+.. ++...+.+++++.+.+++.+ ...+++.+... -+++..-.+..... -.++
T Consensus 413 ~~aDlViEAv~E~l~~K~~vf~---~l~~~~~~~~ilasNTSsl~--i~~la~~~~~p-~r~ig~Hff~P~~~---m~Lv 483 (737)
T TIGR02441 413 KNADMVIEAVFEDLSLKHKVIK---EVEAVVPPHCIIASNTSALP--IKDIAAVSSRP-EKVIGMHYFSPVDK---MQLL 483 (737)
T ss_pred ccCCeehhhccccHHHHHHHHH---HHHhhCCCCcEEEEcCCCCC--HHHHHhhcCCc-cceEEEeccCCccc---CceE
Confidence 8999999999988888766653 66677778877776555444 34666665432 23333211111111 1345
Q ss_pred EEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018694 184 IFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAI 254 (351)
Q Consensus 184 ~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 254 (351)
.++.+ ++++.+.+..++..+|+ ++.+.+ .|. . ++. .....+.|+..+.+ .|++++++..++
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGF--i---~NR----i~~~~~~ea~~lv~-eGv~~~~ID~a~ 549 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGF--Y---TTR----CLGPMLAEVIRLLQ-EGVDPKKLDKLT 549 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCc--h---HHH----HHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 45444 78899999999999999 666665 332 2 122 23455778877654 478988888775
No 99
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.26 E-value=2.9e-10 Score=116.51 Aligned_cols=189 Identities=17% Similarity=0.116 Sum_probs=127.6
Q ss_pred CCCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHH-----------hc-------------CCcccCCHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLL-----------DI-------------GAHLADSPHSL 102 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~~~~~ 102 (351)
...||+|||+|.||..||..++ .+|++|+++|++++.++... +. .+..+++. +.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RG 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HH
Confidence 3578999999999999999999 88999999999987543321 11 14445566 45
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCce
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTL 182 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~ 182 (351)
+++||+||.|+|...+++.-+.. ++..++.+++++.+.+++.+ ..++++.+..+ -+++..-.+..+.. -.+
T Consensus 387 ~~~aDlViEav~E~~~~K~~v~~---~le~~~~~~~ilasnTS~l~--i~~la~~~~~p-~r~ig~Hff~P~~~---~~l 457 (708)
T PRK11154 387 FKHADVVIEAVFEDLALKQQMVA---EVEQNCAPHTIFASNTSSLP--IGQIAAAAARP-EQVIGLHYFSPVEK---MPL 457 (708)
T ss_pred hccCCEEeecccccHHHHHHHHH---HHHhhCCCCcEEEECCCCCC--HHHHHHhcCcc-cceEEEecCCcccc---Cce
Confidence 68999999999988888766653 66677888888877666544 33666655432 23443322211111 134
Q ss_pred eEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018694 183 AIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAIS 255 (351)
Q Consensus 183 ~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 255 (351)
+.++.+ ++++.+.+..++..+|+ ++.+.+ ..+.. ..-.....+.|++.+.+. |++++++..++.
T Consensus 458 VEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d-~pGfi-------~nRl~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 458 VEVIPHAKTSAETIATTVALAKKQGKTPIVVRD-GAGFY-------VNRILAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCceEEEec-cCcHH-------HHHHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 545544 88999999999999999 666655 22222 112244557888877664 788888877765
No 100
>PRK07574 formate dehydrogenase; Provisional
Probab=99.26 E-value=8e-11 Score=111.48 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=95.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|+||..+|+.|...|++|.+|||+....+...+.|+....+++++++.||+|++++|...+++.++..
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--- 268 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA--- 268 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH---
Confidence 47899999999999999999999999999999864333333446666678999999999999999999999999863
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+....+
T Consensus 269 ~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i 303 (385)
T PRK07574 269 DVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHL 303 (385)
T ss_pred HHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc
Confidence 67778899999999999988888899998876544
No 101
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.25 E-value=2.4e-10 Score=102.88 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=115.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
..+|||||.|+||..+|..|.++||.|...+|+. ...+++. |....+.+.+++ +.+|+|+.|| ....+++++.
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekila-- 126 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKILA-- 126 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHHH--
Confidence 4689999999999999999999999999999985 4444444 777777777776 5799999999 8889999997
Q ss_pred CCCcccC-CCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhccCc-eeEEe----cC----CHHHHHH
Q 018694 127 SSGALSG-LRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKTGT-LAIFA----GG----DESVVQK 195 (351)
Q Consensus 127 ~~~i~~~-l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~g~-~~~~~----~g----~~~~~~~ 195 (351)
..-.. ++.++++++..+........+.++++ +.+.++.+ |.+|........+ +.++. .| .++.++.
T Consensus 127 --typfqrlrrgtlfvdvlSvKefek~lfekYLP-kdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~ 203 (480)
T KOG2380|consen 127 --TYPFQRLRRGTLFVDVLSVKEFEKELFEKYLP-KDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEF 203 (480)
T ss_pred --hcCchhhccceeEeeeeecchhHHHHHHHhCc-cccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHH
Confidence 66655 78899999998876666666777776 57777776 7777663322222 12221 23 3788899
Q ss_pred HHHHHHhhCc-eEE
Q 018694 196 LNPLFALMGK-VNY 208 (351)
Q Consensus 196 v~~ll~~~g~-~~~ 208 (351)
+.++|.+.|. .++
T Consensus 204 fleIf~cegckmVe 217 (480)
T KOG2380|consen 204 FLEIFACEGCKMVE 217 (480)
T ss_pred HHHHHHhcCCeEEE
Confidence 9999999887 444
No 102
>PLN03139 formate dehydrogenase; Provisional
Probab=99.24 E-value=5.3e-11 Score=112.63 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=96.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.-++|||||+|+||..+|+.|..-|++|.+||++....+...+.|+....++++++.++|+|++++|...+++.++..
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~-- 275 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK-- 275 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--
Confidence 347999999999999999999999999999999854444444456666779999999999999999999999999864
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 276 -~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 276 -ERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred -HHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCc
Confidence 67778899999999999988888899999876544
No 103
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.22 E-value=4.7e-10 Score=101.45 Aligned_cols=153 Identities=19% Similarity=0.297 Sum_probs=108.5
Q ss_pred HHHHHHHCC--CeEEEEeCCcccchhHHhcCCcccC-CHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEE
Q 018694 64 MCAHLLNAG--YTVTVFNRTLSKAQPLLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGII 140 (351)
Q Consensus 64 ia~~L~~~g--~~V~~~dr~~~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~i 140 (351)
||+.|.++| ++|++||++++..+...+.|+.... +..+.+.++|+||+|+ +...+.+++. ++.+++.++++|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~Dlvvlav-P~~~~~~~l~----~~~~~~~~~~iv 75 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAV-PVSAIEDVLE----EIAPYLKPGAIV 75 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHHH----HHHCGS-TTSEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcC-CHHHHHHHHH----HhhhhcCCCcEE
Confidence 688899999 6899999999888777677754322 2256789999999999 7888999999 899999999999
Q ss_pred EecCCCChhHHHHHHHHHhcCCCcEEec-cCCCC--------chhhccCceeEEecC---CHHHHHHHHHHHHhhCc-eE
Q 018694 141 VDMTTSEPSLASELSAAASSKNCSAIDA-PVSGG--------DRGAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VN 207 (351)
Q Consensus 141 i~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~--------~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~ 207 (351)
+|+++......+.+.+.++ .+..|+.+ |++|. ......|..++++.+ +++..+.++++++.+|. ++
T Consensus 76 ~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~ 154 (258)
T PF02153_consen 76 TDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVV 154 (258)
T ss_dssp EE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEE
T ss_pred EEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEE
Confidence 9999998877777777766 68899988 88887 333445666666644 45788999999999998 66
Q ss_pred EcCCccHHHHHHHHH
Q 018694 208 YMGGSGKGQFAKLAN 222 (351)
Q Consensus 208 ~~g~~g~a~~~kl~~ 222 (351)
.+.....-..+..+.
T Consensus 155 ~~~~eeHD~~~A~vs 169 (258)
T PF02153_consen 155 EMDAEEHDRIMAYVS 169 (258)
T ss_dssp E--HHHHHHHHHHHT
T ss_pred EcCHHHHHHHHHHHH
Confidence 665444444433333
No 104
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.17 E-value=4.8e-11 Score=98.99 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=84.4
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCH--------------HHhhcCCCEEEEecCChh
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSP--------------HSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~--------------~~~~~~~DiIi~~vp~~~ 117 (351)
|+|+|+|+||..+|..|.++|++|+++.|++ +.+.+.++|+...... .+....+|+||+|| |..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence 7899999999999999999999999999998 7888877765432222 23457899999999 999
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
++++++. .+.+.+.+++.|+.+.|+ .+..+.+.+.++.
T Consensus 79 ~~~~~l~----~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 79 QLEQALQ----SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPR 116 (151)
T ss_dssp GHHHHHH----HHCTGEETTEEEEEESSS-SSHHHHHHCHSTG
T ss_pred chHHHHH----HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCC
Confidence 9999999 899999999999999998 5666777777643
No 105
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.17 E-value=1.3e-09 Score=99.40 Aligned_cols=191 Identities=16% Similarity=0.104 Sum_probs=117.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
++|+|||+|+||.++|.+|...|++|++|++.....+.....|... .+++++++++|+|++++|.+. .++++.. +
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~-t~~V~~~---e 91 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ-QAHVYKA---E 91 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH-HHHHHHH---H
Confidence 6899999999999999999999999999987644444455557765 489999999999999997644 4777752 6
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCchh-----hccCceeEEe-cC--CHHHHHHHHHHH
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGDRG-----AKTGTLAIFA-GG--DESVVQKLNPLF 200 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~~~-----~~~g~~~~~~-~g--~~~~~~~v~~ll 200 (351)
+.+.++++++++ .+-+-.-+. ....+.+++.++ -+|-.+++.- ...|...+++ -. +..+.+......
T Consensus 92 il~~MK~GaiL~-f~hgfni~~---~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a 167 (335)
T PRK13403 92 VEENLREGQMLL-FSHGFNIHF---GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYA 167 (335)
T ss_pred HHhcCCCCCEEE-ECCCcceec---CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHH
Confidence 788888888766 444322111 122234566554 3465544321 1122222222 11 334667777777
Q ss_pred HhhCc----eEEcCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 201 ALMGK----VNYMGGSGKGQFAKLA--NQITIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 201 ~~~g~----~~~~g~~g~a~~~kl~--~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
.++|. ++.+. .....-..+. ...+..+...++.-.+......|.+++.+
T Consensus 168 ~~iG~~ragv~~tt-f~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~A 222 (335)
T PRK13403 168 KGVGCTRAGVIETT-FQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIA 222 (335)
T ss_pred HHcCCCceeEEecc-hHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 88876 33221 1111111111 12334445555566666788889888754
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.16 E-value=2e-10 Score=107.20 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=89.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.|...|++|++||++++....+ .....++++++.++|+|++|+|...++..++..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~--- 218 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDK--- 218 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhH---
Confidence 3689999999999999999999999999999987543221 334568999999999999999888877777753
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
++.+.++++.++|+++.|..-....+.+.+....+
T Consensus 219 ~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 219 AMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTL 253 (330)
T ss_pred HHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCe
Confidence 66778889999999999988888888888875433
No 107
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.14 E-value=5.6e-09 Score=90.70 Aligned_cols=192 Identities=17% Similarity=0.217 Sum_probs=131.4
Q ss_pred CCeEEEEccChh--------------------hHHHHHHHHHCCCeEEEEeCCccc-----chhHHhcCCcccCCHHHhh
Q 018694 49 NTRIGWIGTGVM--------------------GRSMCAHLLNAGYTVTVFNRTLSK-----AQPLLDIGAHLADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~m--------------------G~~ia~~L~~~g~~V~~~dr~~~~-----~~~~~~~g~~~~~~~~~~~ 103 (351)
||||+|.|+|+. |..||-.++.+||+|++.+.|.+. .+...+.|+.++++..+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 589999999987 788999999999999999887554 3445556999999999999
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcC--CCcEE---eccCCCCchhh
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSK--NCSAI---DAPVSGGDRGA 177 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~--~~~~v---~~pv~~~~~~~ 177 (351)
...++.++.+|-...+-.+.+ .+.+++.++.+|.+.++.+|.. -..++..++.+ .+-+- .+.+.|.+..
T Consensus 81 ~~~Ei~VLFTPFGk~T~~Iar----ei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h- 155 (340)
T COG4007 81 EHGEIHVLFTPFGKATFGIAR----EILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQH- 155 (340)
T ss_pred hcceEEEEecccchhhHHHHH----HHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCC-
Confidence 999999999988888888998 9999999999999999976643 23455555432 22221 2233333322
Q ss_pred ccCceeEEec----C----CHHHHHHHHHHHHhhCceEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH
Q 018694 178 KTGTLAIFAG----G----DESVVQKLNPLFALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAH-KAGLNVE 248 (351)
Q Consensus 178 ~~g~~~~~~~----g----~~~~~~~v~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~ 248 (351)
+. .++.+ | .++..+++.++.+..|+..|+-+..--..+.-....+......++.+-+.++. -.|-+.+
T Consensus 156 --~~-yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~e 232 (340)
T COG4007 156 --GH-YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKE 232 (340)
T ss_pred --ce-EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 22 23332 1 67888999999999999433333333333333344444445555556555544 3555544
No 108
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.14 E-value=9.1e-11 Score=100.13 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=88.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.+|..+|+.+..-|.+|++|||+..........+. ...++++++.++|+|++++|-..+.+.++..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~--- 111 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINA--- 111 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH---
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeeee---
Confidence 478999999999999999999999999999999765543445455 4569999999999999999877777776664
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 112 ~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i 146 (178)
T PF02826_consen 112 EFLAKMKPGAVLVNVARGELVDEDALLDALESGKI 146 (178)
T ss_dssp HHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSE
T ss_pred eeeeccccceEEEeccchhhhhhhHHHHHHhhccC
Confidence 55567889999999999988888889988875433
No 109
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.13 E-value=2.8e-10 Score=106.50 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=91.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.|...|++|.+|||++... .....+.. ..++++++.++|+|++|+|...+++.++..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--- 224 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE--- 224 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH---
Confidence 4799999999999999999999999999999986432 22233444 358999999999999999988889888853
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+....++++.++|+++.+.....+.+.+.+.+..
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~ 258 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDTKALVKALKEGW 258 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCC
Confidence 5667789999999999998888889999887543
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.12 E-value=2.3e-10 Score=95.22 Aligned_cols=112 Identities=23% Similarity=0.317 Sum_probs=84.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CC----cccCCHHHhhcCCCEEEEecCChhH-HHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GA----HLADSPHSLASQSDVVFSIVGYPSD-VRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~----~~~~~~~~~~~~~DiIi~~vp~~~~-~~~v 122 (351)
++|+|||+|.||..++..|.+.| ++|++++|++++.+.+.+. +. ....+.++.+.++|+||+|+|.+.. .+.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 68999999999999999999986 7899999998887776554 32 2345667778899999999976654 3332
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.. . ...+.++++++|+++..+.+ .+.+.+.+.|+.++++
T Consensus 100 ~~----~-~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 100 PL----P-PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred CC----C-HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 22 1 12357899999998874433 7777777778888765
No 111
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.11 E-value=2.1e-10 Score=97.73 Aligned_cols=188 Identities=15% Similarity=0.183 Sum_probs=127.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-----------c------------------CCcccCCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-----------I------------------GAHLADSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-----------~------------------g~~~~~~~ 99 (351)
+..|+|||+|.||+.||+--+.+|++|+++|++++.+.+..+ + .+..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 467999999999999999999999999999999876544322 1 14557788
Q ss_pred HHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC----CCcEEec-cCCCCc
Q 018694 100 HSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSK----NCSAIDA-PVSGGD 174 (351)
Q Consensus 100 ~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~----~~~~v~~-pv~~~~ 174 (351)
++++.++|+||.++....+++.-++. ++.....+.+++. ..+++.. ..++.....++ |.+|..- |++
T Consensus 91 ~~~v~dadliiEAivEn~diK~~lF~---~l~~~ak~~~il~-tNTSSl~-lt~ia~~~~~~srf~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 91 SDAVSDADLIIEAIVENLDIKRKLFK---DLDKIAKSSTILA-TNTSSLS-LTDIASATQRPSRFAGLHFFNPVPVM--- 162 (298)
T ss_pred HHhhhhhHHHHHHHHHhHHHHHHHHH---HHHhhcccceEEe-eccccee-HHHHHhhccChhhhceeeccCCchhH---
Confidence 88899999999998777777765552 3433344444444 3333232 23444444322 4555432 444
Q ss_pred hhhccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018694 175 RGAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGG-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVEL 249 (351)
Q Consensus 175 ~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 249 (351)
.++.++.+ +++++..+..+.+.+|+ .+.+.+ +|. +++. ..+-.+.|++.+.++..-+.++
T Consensus 163 ------KLvEVir~~~TS~eTf~~l~~f~k~~gKttVackDtpGF-----IVNR----lLiPyl~ea~r~yerGdAskeD 227 (298)
T KOG2304|consen 163 ------KLVEVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPGF-----IVNR----LLIPYLMEAIRMYERGDASKED 227 (298)
T ss_pred ------HHhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCch-----hhhH----HHHHHHHHHHHHHHhcCCcHhh
Confidence 22333333 67888999999999999 555555 444 1222 2345578999999999999999
Q ss_pred HHHHHhcCCC
Q 018694 250 FLNAISTGAA 259 (351)
Q Consensus 250 ~~~~~~~~~~ 259 (351)
+...++.+.+
T Consensus 228 IDtaMklGag 237 (298)
T KOG2304|consen 228 IDTAMKLGAG 237 (298)
T ss_pred HHHHHhccCC
Confidence 8888877653
No 112
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.10 E-value=1.1e-08 Score=91.36 Aligned_cols=241 Identities=18% Similarity=0.195 Sum_probs=167.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCcccchhHHh-------------------cCCcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSKAQPLLD-------------------IGAHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~D 107 (351)
|+||+-||+|.+|..-...++-. ..+|+++|.+..++..... +++.+.++.+..+.++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 58999999999999876665432 2379999999877644322 24667889999999999
Q ss_pred EEEEecCChh--------------HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHh--cCCCcE--Eecc
Q 018694 108 VVFSIVGYPS--------------DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAAS--SKNCSA--IDAP 169 (351)
Q Consensus 108 iIi~~vp~~~--------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~--~~~~~~--v~~p 169 (351)
+||+.|-.|. -.+++.+ .+.+.-...++++.-++......+.+...+. .+|+.| ++.|
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar----~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnp 156 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAAR----MIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNP 156 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHH----HHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccCh
Confidence 9999994332 2345555 5556667888999999998888888888775 245544 4555
Q ss_pred CCC---CchhhccCceeEEecC--CHHHHHHHHHHHHhhCc-----eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018694 170 VSG---GDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK-----VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVY 239 (351)
Q Consensus 170 v~~---~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-----~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l 239 (351)
.+- ..+..-...=-++.|| .++-.+.++.+..-... -+.+...=++..-|++.|++.+--+..++.+.++
T Consensus 157 eflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~sal 236 (481)
T KOG2666|consen 157 EFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSAL 236 (481)
T ss_pred HHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 442 2222111111344555 55655666555443332 3345566788889999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCC
Q 018694 240 AHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLA 302 (351)
Q Consensus 240 a~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~ 302 (351)
|++-|.+..++...+..... .++.+++. .-||.-.+++||+-.++..++..|+|
T Consensus 237 ceatgadv~eva~avg~d~r-------ig~kfl~a--svgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 237 CEATGADVSEVAYAVGTDSR-------IGSKFLNA--SVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred HHhcCCCHHHHHHHhccccc-------ccHHHhhc--ccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 99999999999888765542 12233322 24666678899999899999998876
No 113
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.08 E-value=6e-10 Score=102.60 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=87.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc-ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH-LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~-~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.++|||||+|+||..+|+.+..-|++|.+|||+... .+.. ...++++++.++|+|++++|...+++.++..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~-- 193 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINS-- 193 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCH--
Confidence 478999999999999999988889999999997432 1232 2468999999999999999988988888763
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSK 161 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~ 161 (351)
+....++++.++|+++.+.....+.+.+.+.+.
T Consensus 194 -~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 194 -KMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred -HHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 566778899999999999998888999988754
No 114
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.07 E-value=6.3e-10 Score=104.15 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=87.0
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+||||||+|.||..+|+.|+ ..|++|++||+++... . ..++....++++++.++|+|++|+|.....+.++..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~-- 220 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA-- 220 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH--
Confidence 479999999999999999994 4578999999886432 1 223455568999999999999999887777766542
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+..+.++++.++|+++.+.......+.+.+.+..+
T Consensus 221 -~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 221 -DLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred -HHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence 45567889999999999988888899888875443
No 115
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.06 E-value=8.6e-10 Score=102.13 Aligned_cols=110 Identities=17% Similarity=0.299 Sum_probs=90.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++|||||+|+||..+|+.|...|++|.+|+++......+.. .....++++++.++|+|++++|...+++.++..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~--- 210 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIINQ--- 210 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH---
Confidence 479999999999999999999999999999987654322111 112457899999999999999999999988863
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 211 ~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i 245 (312)
T PRK15469 211 QLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV 245 (312)
T ss_pred HHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCe
Confidence 56677899999999999988888889888876544
No 116
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.05 E-value=1e-09 Score=101.73 Aligned_cols=150 Identities=20% Similarity=0.218 Sum_probs=109.8
Q ss_pred hhhhhccccccccchhhHHHHHHHHhhh----------ccccCCCCCC-CCCCCeEEEEccChhhHHHHHHHHHCCCeEE
Q 018694 8 LLVLRSRTAHSYSLSVSSLVTLLLRRRS----------MATVASTDPV-CPTNTRIGWIGTGVMGRSMCAHLLNAGYTVT 76 (351)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~ 76 (351)
++|.+..+..+.++.+..+..-+...|. ..|++..... .-.-+++||||+|++|+.+|+.+..-|++|.
T Consensus 90 i~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~ 169 (324)
T COG0111 90 ILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVI 169 (324)
T ss_pred CEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 4566666667777766655444433331 2233211111 1124799999999999999999999999999
Q ss_pred EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHH
Q 018694 77 VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSA 156 (351)
Q Consensus 77 ~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~ 156 (351)
+||+...+- .....+.....++++++.++|+|.+.+|...+++.++.. +....++++.++|+++.|..-....+.+
T Consensus 170 ~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~---~~~a~MK~gailIN~aRG~vVde~aL~~ 245 (324)
T COG0111 170 GYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINA---EELAKMKPGAILINAARGGVVDEDALLA 245 (324)
T ss_pred EECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCH---HHHhhCCCCeEEEECCCcceecHHHHHH
Confidence 999943221 122235666789999999999999999999999988875 5566788999999999998888888999
Q ss_pred HHhcC
Q 018694 157 AASSK 161 (351)
Q Consensus 157 ~~~~~ 161 (351)
.+.+.
T Consensus 246 AL~~G 250 (324)
T COG0111 246 ALDSG 250 (324)
T ss_pred HHHcC
Confidence 88754
No 117
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.02 E-value=8e-09 Score=89.71 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.++|+|+|+|+||..+++.|.+.|++|+++|+++++.+.+.+. |....++ +++. .++|+++.|.....-.++.+.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~~-- 104 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTIP-- 104 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHHH--
Confidence 3789999999999999999999999999999998888777665 6555444 4444 479999988644434444444
Q ss_pred CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++ +.++|+...|+.. +..+-.+.+.++|+.|++
T Consensus 105 --~l-----~~~~v~~~AN~~~-~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 105 --QL-----KAKAIAGAANNQL-ADPRHGQMLHERGILYAP 137 (200)
T ss_pred --Hc-----CCCEEEECCcCcc-CCHhHHHHHHHCCCEEeC
Confidence 33 3568999888733 324666777788999986
No 118
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.02 E-value=1.8e-09 Score=107.02 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=92.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.|...|++|.+||+... .+...+.|+...+++++++.++|+|++|+|...+++.++..
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--- 213 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGA--- 213 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH---
Confidence 37899999999999999999999999999998632 22333446665678999999999999999988888888853
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 248 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHV 248 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCe
Confidence 55667889999999999988888899998876544
No 119
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.98 E-value=1.5e-09 Score=98.95 Aligned_cols=141 Identities=26% Similarity=0.271 Sum_probs=98.9
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
.+.+.+++++|+..++.+.+... ... ...+++.|+|+|.+|.+++..|.+.|++|++++|++++.+.+.+
T Consensus 89 ~~~g~l~g~NTD~~G~~~~l~~~------~~~----~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 89 LEDGKLVGYNTDGIGLVSDLERL------IPL----RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred eeCCEEEEEcCCHHHHHHHHHhc------CCC----ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788999999999999997531 110 11257999999999999999999999999999999888766654
Q ss_pred c----CCcccCCHHH-hhcCCCEEEEecCChh--HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 91 I----GAHLADSPHS-LASQSDVVFSIVGYPS--DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 91 ~----g~~~~~~~~~-~~~~~DiIi~~vp~~~--~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
. +.....+.++ ...++|+||.|+|... ...+... -...+.++.+++|++...+.+ .+.+..++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~-----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~ 231 (270)
T TIGR00507 159 RFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPV-----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT 231 (270)
T ss_pred HHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCC-----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence 3 2111223333 2357999999996542 1211110 112356888999999875555 57777777888
Q ss_pred cEEec
Q 018694 164 SAIDA 168 (351)
Q Consensus 164 ~~v~~ 168 (351)
.++++
T Consensus 232 ~~vdG 236 (270)
T TIGR00507 232 KTIDG 236 (270)
T ss_pred eeeCC
Confidence 88876
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.97 E-value=3.5e-09 Score=96.33 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEE-EEeCCcccchhHHhc-C-CcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVT-VFNRTLSKAQPLLDI-G-AHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~-~~dr~~~~~~~~~~~-g-~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
++||||||+|.||..++..|.+. ++++. +||+++++.+.+.++ | ...+++.++++.++|+|++|+|... ..++.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~-h~e~~ 84 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV-LRAIV 84 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH-HHHHH
Confidence 48999999999999999999863 67765 789998887777655 4 3567889999999999999996554 45454
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
. .. +..++.++..+.+.....+++.+...+.+..+
T Consensus 85 ~----~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 85 E----PV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred H----HH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 4 33 34566566566554445677877777777665
No 121
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.97 E-value=4.1e-09 Score=104.58 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=91.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.||..+|+.+...|++|.+||++... +.....|+... ++++++.++|+|++|+|...+++.++..
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~--- 214 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGA--- 214 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH---
Confidence 478999999999999999999999999999986432 23334466655 8999999999999999999899888853
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+....++++.++|+++.+..-..+.+.+.+.+..
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 248 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGIIDEAALAEALKSGK 248 (526)
T ss_pred HHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCC
Confidence 6677889999999999998888889999887543
No 122
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.96 E-value=4.3e-09 Score=99.64 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=87.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChh----HHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPS----DVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~----~~~~v~~ 124 (351)
.++|||||+|+||..+++.+...|++|.+||+..... .+.....++++++.+||+|++++|-.. .+..++.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC
Confidence 3789999999999999999999999999999854321 122234589999999999999998654 4666664
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC--cEEec
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC--SAIDA 168 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~--~~v~~ 168 (351)
. +....++++.++|+++.+..-..+.+.+.+.+... ..+|.
T Consensus 191 ~---~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV 233 (381)
T PRK00257 191 E---AFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDV 233 (381)
T ss_pred H---HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence 3 45667889999999999988888889888865432 34554
No 123
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.95 E-value=2.9e-09 Score=87.26 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=67.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|+|||+|..|.+.|.+|.++|++|++..|... ..+...+.|+.+. +.+|+++.+|+|++.+ ++..-.+++..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~-PD~~q~~vy~~--- 79 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLL-PDEVQPEVYEE--- 79 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S--HHHHHHHHHH---
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeC-ChHHHHHHHHH---
Confidence 6899999999999999999999999999988766 5667777788765 7899999999999999 66667777732
Q ss_pred CcccCCCCCcEEEe
Q 018694 129 GALSGLRPGGIIVD 142 (351)
Q Consensus 129 ~i~~~l~~~~~ii~ 142 (351)
++.+.+.++++++-
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 88889999988773
No 124
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.95 E-value=4.9e-09 Score=95.14 Aligned_cols=108 Identities=24% Similarity=0.354 Sum_probs=78.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCe-EEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYT-VTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||||+|||+|.||..++..+.+. +++ +.++|+++++.+.+.+. +...+++.++++.++|+|++|+ ++....+...
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a-~~~~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECA-SVNAVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcC-ChHHHHHHHH
Confidence 58999999999999999999876 355 55789999888777654 6667789999888999999999 5565666665
Q ss_pred CCCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCCCc
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKNCS 164 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~~~ 164 (351)
.+. ..++.++.++.+ .....+++.+..++.+..
T Consensus 80 ----~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 80 ----KSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred ----HHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 443 234445545442 345556777777666654
No 125
>PLN02928 oxidoreductase family protein
Probab=98.94 E-value=9.9e-09 Score=96.56 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=88.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH------------HhcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL------------LDIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~------------~~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
-++|||||+|.||..+|+.|...|.+|++|+|+....... ...+. ...++++++.++|+|++++|..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCC
Confidence 4799999999999999999999999999999974321110 01112 3468999999999999999988
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
..++.++.. +....++++.++|+++.+..-..+.+.+.+....+
T Consensus 238 ~~T~~li~~---~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 238 KETAGIVND---EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred hHhhcccCH---HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 888888864 56677899999999999988788889888875433
No 126
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.90 E-value=1.2e-08 Score=94.57 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.-++|||||+|++|..+|+.+..-|.+|..||+..... ..+.. ..++++++.+||+|++++|-..+++.++..
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~-- 216 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAY-- 216 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCH--
Confidence 34789999999999999999998899999999864221 12333 458999999999999999989998888875
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-EEec
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS-AIDA 168 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~-~v~~ 168 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+. .+|.
T Consensus 217 -~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV 257 (311)
T PRK08410 217 -KELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDV 257 (311)
T ss_pred -HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEec
Confidence 566778999999999999888888999988754433 3443
No 127
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.90 E-value=9.8e-09 Score=96.94 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH----HHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD----VRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~----~~~v~~ 124 (351)
.++|||||+|+||+.+|+.|..-|++|.+||+..... ... ....++++++.+||+|++++|-... ...++.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 3789999999999999999999999999999753211 111 1246899999999999999975543 555554
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC--cEEec
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC--SAIDA 168 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~--~~v~~ 168 (351)
. +....+++++++|+++.|..-..+.+.+.+.+... ..+|.
T Consensus 191 ~---~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV 233 (378)
T PRK15438 191 E---KLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDV 233 (378)
T ss_pred H---HHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEec
Confidence 2 45567889999999999988888888888865422 34554
No 128
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.89 E-value=2.5e-09 Score=99.42 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=92.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH--CCCeEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~ 88 (351)
-..+++++|| .++.+...++.+. ...+|+|||+|.||..++..+.. ...+|.+|+|++++.+.+
T Consensus 100 d~~~lT~~RTaa~sala~~~La~~-------------~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~ 166 (314)
T PRK06141 100 DGTELTARRTAAASALAASYLARK-------------DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL 166 (314)
T ss_pred cCcchhcchhHHHHHHHHHHhCCC-------------CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 6677889999 5555555554321 12579999999999999986654 346899999999998887
Q ss_pred Hhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 89 LDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 89 ~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
.+. | +..+.++++++.++|+|+.|++.. ..++. . ..+.+++ +|++....+...+++...+..++
T Consensus 167 a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pvl~----~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a 236 (314)
T PRK06141 167 AAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPLVR----G--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRA 236 (314)
T ss_pred HHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCEec----H--HHcCCCC-EEEeeCCCCcccccCCHHHHhcC
Confidence 665 4 556678899999999998888543 33332 1 3456777 45555554555566665555555
Q ss_pred CcEEec
Q 018694 163 CSAIDA 168 (351)
Q Consensus 163 ~~~v~~ 168 (351)
..|+|.
T Consensus 237 ~~~vD~ 242 (314)
T PRK06141 237 SVYVDT 242 (314)
T ss_pred cEEEcC
Confidence 566664
No 129
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.88 E-value=4.6e-07 Score=78.12 Aligned_cols=122 Identities=17% Similarity=0.219 Sum_probs=84.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
|||+|||. |.||..++..|.++|++|+ +.++|+||+|+ +...+.+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilav-Pv~~~~~~i~---- 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSV-PIDAALNYIE---- 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeC-CHHHHHHHHH----
Confidence 68999988 9999999999999999986 25899999999 7777787887
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhhcc-CceeEEecC--CHHHHHHHHHHHHhhC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGAKT-GTLAIFAGG--DESVVQKLNPLFALMG 204 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~~~-g~~~~~~~g--~~~~~~~v~~ll~~~g 204 (351)
++. .+++|+++..... .+. ...|+.. |.+|....... ....+++.. +++..+.++++++ |
T Consensus 50 ~~~------~~v~Dv~SvK~~i----~~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G 113 (197)
T PRK06444 50 SYD------NNFVEISSVKWPF----KKY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--G 113 (197)
T ss_pred HhC------CeEEeccccCHHH----HHh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--C
Confidence 543 3789999875532 221 3468877 88884433211 122333332 5566778888888 5
Q ss_pred c-eEEcCCccHHHHH
Q 018694 205 K-VNYMGGSGKGQFA 218 (351)
Q Consensus 205 ~-~~~~g~~g~a~~~ 218 (351)
. ++.+.....-..+
T Consensus 114 ~~~~~~t~eeHD~~~ 128 (197)
T PRK06444 114 YHFVEMTADEHDLLM 128 (197)
T ss_pred CEEEEeCHHHHHHHH
Confidence 5 6666654444443
No 130
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.88 E-value=8.3e-09 Score=95.70 Aligned_cols=108 Identities=23% Similarity=0.396 Sum_probs=90.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-+++||||.|.+|.++|+.+..-|.+|..|+|++. -+...+.+....+ +++++.++|+|.+.+|-..+...++..
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--- 220 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINA--- 220 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH---
Confidence 47999999999999999999977889999999865 2222222355554 999999999999999999999999875
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSK 161 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~ 161 (351)
+....++++.++|+++.|..-..+.+.+.+.+.
T Consensus 221 ~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 221 EELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 566788999999999999888888999988754
No 131
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.88 E-value=1.3e-08 Score=86.99 Aligned_cols=196 Identities=19% Similarity=0.158 Sum_probs=131.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchh-----------HHhcC--------------CcccCCHHHhhc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP-----------LLDIG--------------AHLADSPHSLAS 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~-----------~~~~g--------------~~~~~~~~~~~~ 104 (351)
-||+|+|.|.+|+..|..|+..|++|.+||..+..++. +.++| +..+++++|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 58999999999999999999999999999998764322 11222 456788999999
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAI 184 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~ 184 (351)
.+=.|-.|+|..-+++.-+. ...+.+...++|+..|++.--. ..+.+-+..+.-..+.-|+.+..-. .++.
T Consensus 84 ~Ai~iQEcvpE~L~lkk~ly----~qlD~i~d~~tIlaSSTSt~mp-S~~s~gL~~k~q~lvaHPvNPPyfi----PLvE 154 (313)
T KOG2305|consen 84 GAIHIQECVPEDLNLKKQLY----KQLDEIADPTTILASSTSTFMP-SKFSAGLINKEQCLVAHPVNPPYFI----PLVE 154 (313)
T ss_pred hhhhHHhhchHhhHHHHHHH----HHHHHhcCCceEEeccccccCh-HHHhhhhhhhhheeEecCCCCCccc----chhe
Confidence 99899999988888876666 4444444555666655543222 2344444333334555566544221 2233
Q ss_pred EecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 018694 185 FAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAG 260 (351)
Q Consensus 185 ~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 260 (351)
++.. .++..++.+.+.+.+|. .+.....-.+.. +.....+.++|.+.+....+++..+...++..+.+.
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~-------lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~ 227 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFA-------LNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGP 227 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccce-------eccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCc
Confidence 3332 78889999999999997 443332111111 112244668899999999999998988888887754
Q ss_pred c
Q 018694 261 S 261 (351)
Q Consensus 261 s 261 (351)
.
T Consensus 228 R 228 (313)
T KOG2305|consen 228 R 228 (313)
T ss_pred c
Confidence 3
No 132
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.87 E-value=3.2e-08 Score=92.20 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=89.2
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+++||||+|++|..+|+.+. .-|.+|.+|++.... +.....+... .++++++++||+|++++|....++.++..
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~-- 220 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA-- 220 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--
Confidence 378999999999999999997 678899999987422 1122234443 58999999999999999999999888864
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 221 -~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 221 -EQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred -HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 56677899999999999988888899998875433
No 133
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.85 E-value=1.7e-08 Score=96.96 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=90.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|++|..+|+.+..-|.+|.+||+++... ..+.....++++++++||+|++++|...+++.++..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--- 223 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--- 223 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCH---
Confidence 4789999999999999999999999999999864221 123445568999999999999999988989888864
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 224 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 224 EELALMKPGAILINASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred HHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc
Confidence 56677899999999999988888899998876544
No 134
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.85 E-value=9e-09 Score=94.25 Aligned_cols=142 Identities=21% Similarity=0.225 Sum_probs=97.0
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
+.+.+.|++|+||..++.+.+.... .. ....||.|||+|.+|.+++..|...|. +|+++||+.++.+.+
T Consensus 98 ~~~~g~l~G~NTD~~G~~~~l~~~~-----~~-----~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l 167 (284)
T PRK12549 98 VFRDGRRIGHNTDWSGFAESFRRGL-----PD-----ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL 167 (284)
T ss_pred EecCCEEEEEcCCHHHHHHHHHhhc-----cC-----ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 3467889999999999999986311 01 012579999999999999999999998 799999999988877
Q ss_pred Hhc-----C-Ccc--cCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHh
Q 018694 89 LDI-----G-AHL--ADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGAL-SGLRPGGIIVDMTTSEPSLASELSAAAS 159 (351)
Q Consensus 89 ~~~-----g-~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~ 159 (351)
.+. . ... ..+..+.+.++|+||.|+|-...-..-. .+. ..+.++.+++|+.-....+ .+.+..+
T Consensus 168 a~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~-----~~~~~~l~~~~~v~DivY~P~~T--~ll~~A~ 240 (284)
T PRK12549 168 ADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGL-----PLPAELLRPGLWVADIVYFPLET--ELLRAAR 240 (284)
T ss_pred HHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCC-----CCCHHHcCCCcEEEEeeeCCCCC--HHHHHHH
Confidence 653 1 111 2334456678999999996442110000 111 2356778899988653332 4555556
Q ss_pred cCCCcEEec
Q 018694 160 SKNCSAIDA 168 (351)
Q Consensus 160 ~~~~~~v~~ 168 (351)
+.|+..+++
T Consensus 241 ~~G~~~~~G 249 (284)
T PRK12549 241 ALGCRTLDG 249 (284)
T ss_pred HCCCeEecC
Confidence 678777765
No 135
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.82 E-value=2.5e-08 Score=91.42 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=82.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.||+|||+|.+|..+++.|...|.+|++++|++++.+.+.+.|.... .++++.+.++|+||.|+|.....++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~------ 225 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTAD------ 225 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHH------
Confidence 68999999999999999999999999999999877666655554432 3556778899999999965422222
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
..+.+.++.++||+++..-++ .+ +..++.|+..+-+|..++
T Consensus 226 --~l~~~k~~aliIDlas~Pg~t--df-~~Ak~~G~~a~~~~glPg 266 (287)
T TIGR02853 226 --VLSKLPKHAVIIDLASKPGGT--DF-EYAKKRGIKALLAPGLPG 266 (287)
T ss_pred --HHhcCCCCeEEEEeCcCCCCC--CH-HHHHHCCCEEEEeCCCCc
Confidence 333456889999999863332 22 344566877776665544
No 136
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.81 E-value=4.8e-08 Score=90.91 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=87.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|++|..+|+.+..-|.+|.+|++.... . ... ..++++++.++|+|++++|-..+++.++..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~--- 217 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGA--- 217 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCH---
Confidence 368999999999999999999889999999986321 1 122 347999999999999999989999888875
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 218 ~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 252 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDEQALADALRSGHL 252 (317)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 56677899999999999988888889988876443
No 137
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.79 E-value=1.8e-08 Score=92.11 Aligned_cols=143 Identities=24% Similarity=0.251 Sum_probs=97.0
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHH
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~ 89 (351)
.+.+.|++|+|+..++.+.+...... .....++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.
T Consensus 94 ~~~g~l~G~NTD~~G~~~~l~~~~~~---------~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 94 LEDGRLIGDNTDGIGFVRALEERLGV---------DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA 164 (278)
T ss_pred eeCCEEEEEcccHHHHHHHHHhccCC---------CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 45788999999999999988632100 112257999999999999999999999 68999999998887776
Q ss_pred hcC-----CcccCCHHHhhcCCCEEEEecCChhHHH-HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 90 DIG-----AHLADSPHSLASQSDVVFSIVGYPSDVR-HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 90 ~~g-----~~~~~~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+.. +....+..+.+.++|+||.|+|-+..-. .... -....+.++.+++|+.-. |..+ .+.+..++.|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~----~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~ 238 (278)
T PRK00258 165 KLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPP----LPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGA 238 (278)
T ss_pred HHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCCC----CCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcC
Confidence 541 1111133455678999999996543210 0000 111235678899999875 3322 45555566677
Q ss_pred cEEec
Q 018694 164 SAIDA 168 (351)
Q Consensus 164 ~~v~~ 168 (351)
.++++
T Consensus 239 ~~~~G 243 (278)
T PRK00258 239 RTIDG 243 (278)
T ss_pred eecCC
Confidence 77655
No 138
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.76 E-value=2.9e-08 Score=92.16 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=87.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-++|||||+|.+|..+|+.+..-|.+|..|++.... .. .. ...++++++.++|+|++++|-...++.++..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~--- 217 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINA--- 217 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCH---
Confidence 479999999999999999999889999999986421 11 11 1458999999999999999988889888875
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
+....++++.++|+++.+..-..+.+.+.+.+..+
T Consensus 218 ~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 218 ETLALMKPTAFLINTGRGPLVDEQALLDALENGKI 252 (314)
T ss_pred HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 56677899999999999988888889998876443
No 139
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.74 E-value=5.5e-08 Score=89.47 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=92.7
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.-+||||+|+|.+|..+|++|..-|..+..+.|++...+...+.+.. ..+.++.+.++|+|++|+|-...+..++.+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk-- 237 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINK-- 237 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--
Confidence 34799999999999999999999886677778887766666555544 458899999999999999999999999986
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
+...+++++.++|+++.|..-..+.+.+.+.+
T Consensus 238 -~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 238 -KFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred -HHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 77788999999999999988888888888864
No 140
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.72 E-value=5.6e-08 Score=95.33 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=93.4
Q ss_pred hhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 11 LRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
-++|.|+||+|+..++.+.+...- . . ...++++|+|+|.+|.+++..|.+.|++|++++|++++.+.+.+
T Consensus 304 ~~~g~l~G~NTD~~G~~~~l~~~~---~--~-----~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~ 373 (477)
T PRK09310 304 FRNGKIEGYNTDGEGLFSLLKQKN---I--P-----LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALAS 373 (477)
T ss_pred eeCCEEEEEecCHHHHHHHHHhcC---C--C-----cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 468899999999999999884210 0 1 11268999999999999999999999999999999888777655
Q ss_pred c-CCcc--cCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 91 I-GAHL--ADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 91 ~-g~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
. +... ..+..+ +.++|+||.|+|.+..+.. .+ . .+++|+....+.+ .+.+..++.|+..++
T Consensus 374 ~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~-------~l----~--~~v~D~~Y~P~~T--~ll~~A~~~G~~~~~ 437 (477)
T PRK09310 374 RCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPK-------AF----P--PCVVDINTLPKHS--PYTQYARSQGSSIIY 437 (477)
T ss_pred HhccceechhHhcc-cCCCCEEEEcCCCCCcchh-------HH----h--hhEEeccCCCCCC--HHHHHHHHCcCEEEC
Confidence 4 2111 112222 4689999999976653321 11 1 3899998875544 255666667877775
Q ss_pred c
Q 018694 168 A 168 (351)
Q Consensus 168 ~ 168 (351)
+
T Consensus 438 G 438 (477)
T PRK09310 438 G 438 (477)
T ss_pred c
Confidence 5
No 141
>PLN02306 hydroxypyruvate reductase
Probab=98.71 E-value=7e-08 Score=91.77 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=87.6
Q ss_pred CCeEEEEccChhhHHHHHHHH-HCCCeEEEEeCCccc-chhHH-hcC------------CcccCCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGTGVMGRSMCAHLL-NAGYTVTVFNRTLSK-AQPLL-DIG------------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~-~~g~~V~~~dr~~~~-~~~~~-~~g------------~~~~~~~~~~~~~~DiIi~~v 113 (351)
-++|||||+|.+|..+|+.+. .-|.+|.+||++... .+.+. ..+ .....++++++.++|+|++++
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC
Confidence 478999999999999999985 668999999987532 11110 111 122458999999999999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
|-...++.++.. +....++++.++|+++.|..-....+.+.+.+..
T Consensus 245 Plt~~T~~lin~---~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~ 290 (386)
T PLN02306 245 VLDKTTYHLINK---ERLALMKKEAVLVNASRGPVIDEVALVEHLKANP 290 (386)
T ss_pred CCChhhhhhcCH---HHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence 988899888875 5667889999999999998877888888887543
No 142
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.68 E-value=1.8e-07 Score=74.24 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=79.0
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeE-EEEeCCcccchhHHhc-CCcccCCHHHhhc--CCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTV-TVFNRTLSKAQPLLDI-GAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V-~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~ 123 (351)
+||+|||+|.+|......+.+. ++++ .++|+++++.+.+.+. |+..+++.+++++ +.|+|++|+|+..+.+-+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 5899999999999999888876 3454 4789999888877554 8889999999987 7999999997777666555
Q ss_pred hCCCCCcccCCCCC-cEEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 124 LHPSSGALSGLRPG-GIIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 124 ~~~~~~i~~~l~~~-~~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
. -+. .| .++++-- ..+....+++.+...+.+..+
T Consensus 81 ~----~l~----~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 K----ALE----AGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp H----HHH----TTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred H----HHH----cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 4 222 23 3455421 123666777777776666543
No 143
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.64 E-value=1.7e-07 Score=86.30 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=80.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.|++|||+|.+|..++..|...|.+|++++|++++.+.....|.... .+..+.+.++|+||.|+|.....++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l---- 228 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVL---- 228 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHH----
Confidence 68999999999999999999999999999999887666666665543 355677889999999996543333333
Q ss_pred CCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 128 SGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
..+.++.+|||++...-++ . + +.....|+..+-.+..
T Consensus 229 ----~~~~~g~vIIDla~~pggt-d-~-~~a~~~Gv~~~~~~~l 265 (296)
T PRK08306 229 ----SKMPPEALIIDLASKPGGT-D-F-EYAEKRGIKALLAPGL 265 (296)
T ss_pred ----HcCCCCcEEEEEccCCCCc-C-e-eehhhCCeEEEEECCC
Confidence 3456899999999863332 1 2 2334456666655444
No 144
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.63 E-value=2e-06 Score=81.91 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=114.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCC------cccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT------LSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~------~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.++|+|||+|.+|.+.|.+|...|++|++--|. ....+.+.+.|..+ .+.++++..+|+|++.+|.. .-..+
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v 113 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDV 113 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHH
Confidence 378999999999999999999999999955443 33445555567765 67999999999999999666 45555
Q ss_pred hhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCchh-----hccCceeEE-ec--C--CHH
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGDRG-----AKTGTLAIF-AG--G--DES 191 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~~~-----~~~g~~~~~-~~--g--~~~ 191 (351)
.. ++.+.+++++++. .+-|-.-+. ....+.+++.++ -+|-.+++.- ...|...++ +. . +..
T Consensus 114 ~~----~i~p~LK~Ga~L~-fsHGFni~~---~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~ 185 (487)
T PRK05225 114 VR----AVQPLMKQGAALG-YSHGFNIVE---VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGE 185 (487)
T ss_pred HH----HHHhhCCCCCEEE-ecCCceeee---CceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCch
Confidence 65 8889998888766 444422111 111233456554 3454443321 111221222 22 2 344
Q ss_pred HHHHHHHHHHhhCc----eEEcCCccHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHhc
Q 018694 192 VVQKLNPLFALMGK----VNYMGGSGKGQFAK-LANQITIATTMVGLVE-GMVYAHKAGLNVELFLNAIST 256 (351)
Q Consensus 192 ~~~~v~~ll~~~g~----~~~~g~~g~a~~~k-l~~n~~~~~~~~~~~E-a~~la~~~Gi~~~~~~~~~~~ 256 (351)
+.+.+.....++|. ++.+. ........ +....+..+.++...+ .+....+.|.+++.++..+..
T Consensus 186 a~~~ala~a~~iG~~ragv~~tt-f~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~ 255 (487)
T PRK05225 186 GMAIAKAWAAATGGHRAGVLESS-FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQF 255 (487)
T ss_pred HHHHHHHHHHHhCCCccceeecc-hHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 66777777777775 33221 11111111 1112222223332223 333567789999888765433
No 145
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.63 E-value=2.9e-07 Score=73.68 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=74.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH-CCCeEE-EEeCCcc-cc----hhH---HhcCCcccCCHHHhhcCCCEEEEecCChhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN-AGYTVT-VFNRTLS-KA----QPL---LDIGAHLADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~-~g~~V~-~~dr~~~-~~----~~~---~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
|||+|+|+ |.||+.+++.+.+ .++++. +++++++ .. ..+ ...|+.+.+++++++..+|++|-++ .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 68999999 9999999999998 778854 6677762 11 111 1236788899999998999999999 8888
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
+.+.++ ... ..+..+|..+|+......+..+.+.+ .+.++-+|++
T Consensus 80 ~~~~~~----~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~-~~~vl~a~Nf 124 (124)
T PF01113_consen 80 VYDNLE----YAL---KHGVPLVIGTTGFSDEQIDELEELAK-KIPVLIAPNF 124 (124)
T ss_dssp HHHHHH----HHH---HHT-EEEEE-SSSHHHHHHHHHHHTT-TSEEEE-SSS
T ss_pred hHHHHH----HHH---hCCCCEEEECCCCCHHHHHHHHHHhc-cCCEEEeCCC
Confidence 877776 333 35777887888765443333333332 3667766664
No 146
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.59 E-value=1.2e-07 Score=88.54 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=84.5
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH--CCCeEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~ 88 (351)
-..+++.+|| .++.+...++.+. ...+++|||+|.+|...+..+.. ...+|.+|+|++++.+.+
T Consensus 103 d~~~lT~~RTaA~salaa~~La~~-------------~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~ 169 (325)
T TIGR02371 103 DGTYITDMRTGAAGGVAAKYLARK-------------DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKF 169 (325)
T ss_pred eCcchhhHHHHHHHHHHHHHhCCC-------------CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 6678889999 5556655555331 12579999999999998877764 334899999999998777
Q ss_pred Hhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 89 LDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 89 ~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.++ | +..+.+.++++.++|+|+.|+|... .++. ...+++|..|..+++-.|.
T Consensus 170 ~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~~~------~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 170 ALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PVVK------ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred HHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cEec------HHHcCCCCEEEecCCCCcc
Confidence 653 5 4567899999999999999995432 2222 1245789888888776553
No 147
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=98.59 E-value=4.6e-07 Score=83.03 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=92.2
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~ 90 (351)
.++++++|+||..++.+.+....... . ....++.|||+|.+|.+++..|.+.|. +|++++|+.++.+.+.+
T Consensus 96 ~~g~l~G~NTD~~G~~~~l~~~~~~~---~-----~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 96 QNGIWKGDNTDWDGIAGALANIGKFE---P-----LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred CCCcEEEecCCHHHHHHHHHhhCCcc---c-----cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 46789999999999999986321000 0 012579999999999999999999997 69999999999888766
Q ss_pred c-C----CcccC---CHHHhhcCCCEEEEecCChhHHHHH-hhCCCCCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 91 I-G----AHLAD---SPHSLASQSDVVFSIVGYPSDVRHV-LLHPSSGAL-SGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 91 ~-g----~~~~~---~~~~~~~~~DiIi~~vp~~~~~~~v-~~~~~~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
. + +.... +..+.+.++|+||.|+|-....... +......+. ..+.++.+++|+.-....+ .+.+..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~ 245 (282)
T TIGR01809 168 LGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT--PLVAIVSA 245 (282)
T ss_pred HhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC--HHHHHHHH
Confidence 4 1 11122 2234456899999999754322111 110000000 1124567888887542222 44444455
Q ss_pred CCCcEEec
Q 018694 161 KNCSAIDA 168 (351)
Q Consensus 161 ~~~~~v~~ 168 (351)
.|+..+++
T Consensus 246 ~G~~~~~G 253 (282)
T TIGR01809 246 AGWRVISG 253 (282)
T ss_pred CCCEEECc
Confidence 66666654
No 148
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.59 E-value=1.9e-07 Score=87.96 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=79.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhcC---C-------cccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDIG---A-------HLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~g---~-------~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
||||.|||+|.+|+.+|..|+++| .+|++.||+.++.+++.... + .-.+.+.+++++.|+||.|.|+..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 689999999999999999999998 89999999999888886652 1 112345577888999999996555
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
.. .+++ ..+..+..++|++...+.. .++.+.+.+.|+.++
T Consensus 81 ~~-~i~k-------a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v 120 (389)
T COG1748 81 DL-TILK-------ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAV 120 (389)
T ss_pred hH-HHHH-------HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEE
Confidence 44 4554 2234667788877765543 556666555565544
No 149
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.54 E-value=8e-07 Score=76.27 Aligned_cols=104 Identities=21% Similarity=0.356 Sum_probs=75.1
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCe-EEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYT-VTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
|+|++||||.+|..+...+.+. +++ |.+|||+.++++.+.+. +.+..+++++.+...|+++.|. .++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~~- 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYVP- 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHhH-
Confidence 5899999999999999987643 354 77999999988776554 5556689999999999999999 8888887777
Q ss_pred CCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHh
Q 018694 126 PSSGALSGLRPGGIIVDMTTS-EPSLASELSAAAS 159 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~ 159 (351)
+++.. ..+-+|++.+.- .++..+++.+..+
T Consensus 79 ---~~L~~-g~d~iV~SVGALad~~l~erl~~lak 109 (255)
T COG1712 79 ---KILKA-GIDVIVMSVGALADEGLRERLRELAK 109 (255)
T ss_pred ---HHHhc-CCCEEEEechhccChHHHHHHHHHHh
Confidence 55431 234456655542 3444444544444
No 150
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.50 E-value=4.1e-07 Score=82.89 Aligned_cols=74 Identities=30% Similarity=0.506 Sum_probs=62.5
Q ss_pred CCeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-++|+|||.| .||..|+..|.++|++|++|++.. .++.+.++++|+||+|++++..+...+
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~~~v~~~~---- 220 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRPRLIDADW---- 220 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCChhcccHhh----
Confidence 3689999996 999999999999999999998753 268888899999999998877666544
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+|+++||++..
T Consensus 221 ------ik~GaiVIDvgin 233 (301)
T PRK14194 221 ------LKPGAVVIDVGIN 233 (301)
T ss_pred ------ccCCcEEEEeccc
Confidence 4689999998843
No 151
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=98.49 E-value=5.9e-07 Score=82.63 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=92.1
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCc---ccc
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTL---SKA 85 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~---~~~ 85 (351)
+.++|.+++++||..++.+.+..... . ...+++.|+|+|.+|.+++..|++.|.. |++++|++ ++.
T Consensus 97 ~~~~g~l~G~NTD~~G~~~~l~~~~~-----~-----~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a 166 (289)
T PRK12548 97 VNDDGKLTGHITDGLGFVRNLREHGV-----D-----VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERA 166 (289)
T ss_pred EeECCEEEEEecCHHHHHHHHHhcCC-----C-----cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHH
Confidence 34678899999999999998863211 0 1125789999999999999999999986 99999996 555
Q ss_pred hhHHhc----C--Ccc--c--C---CHHHhhcCCCEEEEecCChhHHH-HHhhCCCCCc--ccCCCCCcEEEecCCCChh
Q 018694 86 QPLLDI----G--AHL--A--D---SPHSLASQSDVVFSIVGYPSDVR-HVLLHPSSGA--LSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 86 ~~~~~~----g--~~~--~--~---~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~~i--~~~l~~~~~ii~~s~~~~~ 149 (351)
+.+.+. + ... . + +.++.+..+|+||.|+|-...-. +.. -+ ...+.++.+++|+.-....
T Consensus 167 ~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~-----~~~~~~~l~~~~~v~D~vY~P~~ 241 (289)
T PRK12548 167 EQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGET-----NIKDTSVFRKDLVVADTVYNPKK 241 (289)
T ss_pred HHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCC-----CCCcHHhcCCCCEEEEecCCCCC
Confidence 554332 1 111 1 1 12234457899999996543210 000 11 1235677889998865333
Q ss_pred HHHHHHHHHhcCCCcEEec
Q 018694 150 LASELSAAASSKNCSAIDA 168 (351)
Q Consensus 150 ~~~~l~~~~~~~~~~~v~~ 168 (351)
+ .+.+..++.|+..+++
T Consensus 242 T--~ll~~A~~~G~~~~~G 258 (289)
T PRK12548 242 T--KLLEDAEAAGCKTVGG 258 (289)
T ss_pred C--HHHHHHHHCCCeeeCc
Confidence 2 4555555667777665
No 152
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.48 E-value=3.7e-07 Score=85.38 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=84.6
Q ss_pred hhhhhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCccc
Q 018694 7 LLLVLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSK 84 (351)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~ 84 (351)
..++...++++++||+..+........ +. ...+++|||+|.+|...+..|.. .+. +|++|+|++++
T Consensus 99 ~ai~~d~~~lT~~RTaa~~~laa~~la---~~---------~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~ 166 (326)
T TIGR02992 99 QALLLDNGYLTDVRTAAAGAVAARHLA---RE---------DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK 166 (326)
T ss_pred eEEEcCCchHHHHHHHHHHHHHHHHhC---CC---------CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH
Confidence 344457788999999777766555322 11 12579999999999999999974 564 69999999999
Q ss_pred chhHHhc-----CCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 85 AQPLLDI-----GAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 85 ~~~~~~~-----g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+.+.+. |+. ..++.++++.++|+|+.|+|... .++. ...+++++.+..+..-
T Consensus 167 a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p~i~------~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 167 AEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---PILH------AEWLEPGQHVTAMGSD 226 (326)
T ss_pred HHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---cEec------HHHcCCCcEEEeeCCC
Confidence 8877653 443 36788889999999999995432 2222 1245678777766643
No 153
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.47 E-value=1.3e-06 Score=77.86 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC---Ce-EEEEeCCcccchhHHhcCCcccCCHHHh-hcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG---YT-VTVFNRTLSKAQPLLDIGAHLADSPHSL-ASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g---~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~-~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+||+|||||+||..++..|.+.+ ++ +.+++|++++.+.+... ...+.+++++ ...+|+|+.|. .+..+++..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A-~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAA-GQQAIAEHA 79 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECC-CHHHHHHHH
Confidence 589999999999999999987542 45 44678888777777654 7788899996 57899999999 888888777
Q ss_pred hCCCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCC
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKN 162 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~ 162 (351)
. .++ ..+.-++-+|.+ .+...+++.+...+.+
T Consensus 80 ~----~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 80 E----GCL---TAGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred H----HHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 7 554 345444444433 3344555555555433
No 154
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=98.47 E-value=6.5e-07 Score=81.30 Aligned_cols=146 Identities=23% Similarity=0.242 Sum_probs=98.5
Q ss_pred hhh-ccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchh
Q 018694 10 VLR-SRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQP 87 (351)
Q Consensus 10 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~ 87 (351)
+.+ .|.+++|+||..++...+.....-...+ ..++.|+|+|..+.+++..|++.|. +|++++|+.++.++
T Consensus 94 ~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~--------~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~ 165 (283)
T COG0169 94 VREDDGKLRGYNTDGIGFLRALKEFGLPVDVT--------GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEE 165 (283)
T ss_pred EEccCCEEEEEcCCHHHHHHHHHhcCCCcccC--------CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 445 3899999999999988887753221111 2579999999999999999999995 79999999999888
Q ss_pred HHhc----CCc-ccCCHHHh--hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 88 LLDI----GAH-LADSPHSL--ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 88 ~~~~----g~~-~~~~~~~~--~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
+.+. +.. ......+. ..++|+||-|||-...-.. -..+. . ...+.+..++.|+--....+ .+.+..++
T Consensus 166 La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~-~~~~~-~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~ 240 (283)
T COG0169 166 LADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPE-GDSPV-P-AELLPKGAIVYDVVYNPLET--PLLREARA 240 (283)
T ss_pred HHHHhhhcccccccccccccccccccCEEEECCCCCCCCCC-CCCCC-c-HHhcCcCCEEEEeccCCCCC--HHHHHHHH
Confidence 8665 211 11122221 1258999999976554432 00000 1 23456888999988763333 45556666
Q ss_pred CCCcEEec
Q 018694 161 KNCSAIDA 168 (351)
Q Consensus 161 ~~~~~v~~ 168 (351)
.|+.++++
T Consensus 241 ~G~~~idG 248 (283)
T COG0169 241 QGAKTIDG 248 (283)
T ss_pred cCCeEECc
Confidence 77777765
No 155
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=98.45 E-value=9e-07 Score=81.16 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=92.5
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcc---cc
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLS---KA 85 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~---~~ 85 (351)
+.+++.+++|+||..++.+.+..... . ....++.|||+|..+++++..|...|. +|++++|+++ +.
T Consensus 95 ~~~~g~l~G~NTD~~Gf~~~l~~~~~-----~-----~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka 164 (288)
T PRK12749 95 VNDDGYLRGYNTDGTGHIRAIKESGF-----D-----IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA 164 (288)
T ss_pred EccCCEEEEEecCHHHHHHHHHhcCC-----C-----cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHH
Confidence 34678899999999999998863211 1 112579999999999999999998887 7999999953 66
Q ss_pred hhHHhc-C------CcccCCH------HHhhcCCCEEEEecCChhH--HHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 86 QPLLDI-G------AHLADSP------HSLASQSDVVFSIVGYPSD--VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 86 ~~~~~~-g------~~~~~~~------~~~~~~~DiIi~~vp~~~~--~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
+.+.+. + +.. .+. .+.+.++|+||.|+|-... ...... .-...+.++.+++|+.-....+
T Consensus 165 ~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~----~~~~~l~~~~~v~D~vY~P~~T 239 (288)
T PRK12749 165 LAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNGTKVGMKPLENESLV----NDISLLHPGLLVTECVYNPHMT 239 (288)
T ss_pred HHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCC----CcHHHCCCCCEEEEecCCCccC
Confidence 666543 1 111 122 2244578999999965432 111010 0012345778888887653322
Q ss_pred HHHHHHHHhcCCCcEEec
Q 018694 151 ASELSAAASSKNCSAIDA 168 (351)
Q Consensus 151 ~~~l~~~~~~~~~~~v~~ 168 (351)
.+.+..+.+|+..+++
T Consensus 240 --~ll~~A~~~G~~~~~G 255 (288)
T PRK12749 240 --KLLQQAQQAGCKTIDG 255 (288)
T ss_pred --HHHHHHHHCCCeEECC
Confidence 4555556678777765
No 156
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.44 E-value=1.9e-06 Score=77.92 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=74.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHH-CCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
||||+|+|+ |.||..++..+.+ .+++++ ++|+++++.......++..++++++++.++|+|+.|+ ++....+.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t-~p~~~~~~~~- 78 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFT-TPEATLENLE- 78 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECC-CHHHHHHHHH-
Confidence 489999998 9999999998876 467755 5788876655442335667788999888899999999 5444455554
Q ss_pred CCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 126 PSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
.. +..+..++..+++ +....+++.+ .. +++.++-+|++
T Consensus 79 ---~a---l~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~ 117 (257)
T PRK00048 79 ---FA---LEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNF 117 (257)
T ss_pred ---HH---HHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcc
Confidence 22 2345545544444 3444445555 32 45555555555
No 157
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=98.43 E-value=9.5e-07 Score=80.77 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=92.7
Q ss_pred hccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh
Q 018694 12 RSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~ 90 (351)
.++.++||+||..+|.+.+... .. . ...+++.|+|+|..|++++..|.+.|. +|++++|+.++.+.+.+
T Consensus 100 ~~g~l~G~NTD~~Gf~~~L~~~-~~----~-----~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 100 ATGHTTGHNTDVSGFGRGMEEG-LP----N-----AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CCCcEEEEcCCHHHHHHHHHhc-Cc----C-----cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 4788999999999999998531 10 0 012579999999999999999999987 79999999998888765
Q ss_pred c-----CC---cccC--CHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 91 I-----GA---HLAD--SPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 91 ~-----g~---~~~~--~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
. +. ...+ +..+....+|+||-|+|-...-..-.. . .. ..+.++.+++|+.-....+ .+.+..++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~--~-~~-~~l~~~~~v~D~vY~P~~T--~ll~~A~~ 243 (283)
T PRK14027 170 VINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTA--F-DV-SCLTKDHWVGDVVYMPIET--ELLKAARA 243 (283)
T ss_pred HHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCC--C-CH-HHcCCCcEEEEcccCCCCC--HHHHHHHH
Confidence 3 11 1111 113345678999999964431100000 0 11 2345677888887653322 45555556
Q ss_pred CCCcEEec
Q 018694 161 KNCSAIDA 168 (351)
Q Consensus 161 ~~~~~v~~ 168 (351)
.|+.++++
T Consensus 244 ~G~~~~~G 251 (283)
T PRK14027 244 LGCETLDG 251 (283)
T ss_pred CCCEEEcc
Confidence 67777765
No 158
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.42 E-value=6.6e-07 Score=83.70 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=84.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~~~~~ 88 (351)
-..+++++|| .++.+...++.+. ...+++|||+|.+|...+..+.. .+. +|.+|+|++++.+.+
T Consensus 102 d~~~lT~~RTaa~sala~~~la~~-------------~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 168 (325)
T PRK08618 102 DGTYLTQIRTGALSGVATKYLARE-------------DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAF 168 (325)
T ss_pred ccchhhhhhHHHHHHHHHHHhcCC-------------CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHH
Confidence 6778899999 5556655555431 12579999999999999888754 344 799999999988777
Q ss_pred Hhc-----CC--cccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 89 LDI-----GA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 89 ~~~-----g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
.+. ++ ..+.+.++++.++|+|+.|+|...- ++ . ..+++|+.|+.+.+-.|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p---~i-----~--~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 169 AQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP---VF-----S--EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred HHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc---ch-----H--HhcCCCcEEEecCCCCccc
Confidence 652 33 3467889999999999999965421 22 2 3457899998887765543
No 159
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.42 E-value=7.2e-07 Score=83.66 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=83.4
Q ss_pred hhhhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CC-CeEEEEeCCcccc
Q 018694 8 LLVLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AG-YTVTVFNRTLSKA 85 (351)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g-~~V~~~dr~~~~~ 85 (351)
.++...+++++++|+..++....... + +..++|+|||+|.+|.+.+..+.. .+ .+|.+|+|++++.
T Consensus 103 ai~~d~~~lt~~rT~a~~~~a~~~la-------~-----~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a 170 (330)
T PRK08291 103 ALLLDNGYLTDVRTAAAGAVAARHLA-------R-----EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKA 170 (330)
T ss_pred EEEcCCchHHHHHHHHHHHHHHHHhC-------C-----CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 34456789999999888877766421 1 112589999999999999998875 44 4799999999998
Q ss_pred hhHHhc-----CCc--ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 86 QPLLDI-----GAH--LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 86 ~~~~~~-----g~~--~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+.+.+. |+. ..++.++++.++|+|+.|+|... .++. . ..+.+++.+..+..
T Consensus 171 ~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~---p~i~----~--~~l~~g~~v~~vg~ 228 (330)
T PRK08291 171 EAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE---PILK----A--EWLHPGLHVTAMGS 228 (330)
T ss_pred HHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---cEec----H--HHcCCCceEEeeCC
Confidence 888663 343 36788899999999999995432 2222 1 12456666665544
No 160
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.41 E-value=9.8e-07 Score=81.70 Aligned_cols=116 Identities=21% Similarity=0.206 Sum_probs=84.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~~~~~ 88 (351)
-...++++|| .++.+...++.+. ...+++|||+|.+|...+..+.. .+. +|.+|+|++++.+.+
T Consensus 100 d~~~lT~~RTaA~sala~~~La~~-------------~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 166 (304)
T PRK07340 100 DGPTVTGRRTAAVSLLAARTLAPA-------------PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF 166 (304)
T ss_pred cChhHHHHHHHHHHHHHHHHhCCC-------------CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 5567788888 5555555555331 12579999999999999999975 454 799999999988877
Q ss_pred Hhc----CCcc-cCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhH
Q 018694 89 LDI----GAHL-ADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSL 150 (351)
Q Consensus 89 ~~~----g~~~-~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~ 150 (351)
.++ ++.. +.+.++++.++|+|+.|+|... .++. . .+++|+.|..+++-.|..
T Consensus 167 a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~~----~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 167 CAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVYP----E---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred HHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ceeC----c---cCCCCCEEEecCCCCCCc
Confidence 665 3333 4678889999999999996543 3443 2 357899998888765543
No 161
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.40 E-value=6.5e-07 Score=83.09 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=86.4
Q ss_pred hhhhhhhccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCc
Q 018694 6 PLLLVLRSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTL 82 (351)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~ 82 (351)
|++++.-...++++|| .++.+...++.+. ...+++|||+|.++...+..+... -.+|.+|+|++
T Consensus 97 p~Ail~d~~~lT~~RTaA~sala~~~La~~-------------d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~ 163 (315)
T PRK06823 97 PQALLLDEGWLTALRTALAGRIVARLLAPQ-------------HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSE 163 (315)
T ss_pred eEEEEcCCChHHHHHHHHHHHHHHHHhcCC-------------CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCH
Confidence 3444446678888999 4555555555331 125799999999999999988753 22799999999
Q ss_pred ccchhHHhc----CC--cccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 83 SKAQPLLDI----GA--HLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 83 ~~~~~~~~~----g~--~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
++.+.+.+. ++ ..+++.++++.++|+|+.|++... .+++ ..++++++.|..+++-.|.
T Consensus 164 ~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~~~------~~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 164 TALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PLLQ------AEDIQPGTHITAVGADSPG 227 (315)
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ceeC------HHHcCCCcEEEecCCCCcc
Confidence 998776643 33 347889999999999999995332 3332 1346789998888876554
No 162
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.39 E-value=1.9e-06 Score=80.02 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=63.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh----c----C--Cc--ccCCHHHhhcCCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD----I----G--AH--LADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~----~----g--~~--~~~~~~~~~~~~DiIi~~vp~ 115 (351)
||||+|||+|.||..+|..++..|+ +|+++|+++++.+.... . + .+ ..++. +.+.++|+||+++..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 6899999999999999999998876 99999998876543221 1 1 12 23455 457899999999732
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..+++++. ++.+.. ++.++|..+|-
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~----~i~~~~-~~~~viv~tNP 121 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAE----GIKKYA-PDAIVIVVTNP 121 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 2 22455555 555554 55666766664
No 163
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=98.38 E-value=1.4e-06 Score=79.24 Aligned_cols=140 Identities=16% Similarity=0.245 Sum_probs=92.8
Q ss_pred hhhccccccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH
Q 018694 10 VLRSRTAHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~ 88 (351)
+.++|.|++|+||..++.+.+.... . . . ..++.|+|+|..+.+++..|.+.|. +|++++|++++.+.+
T Consensus 94 ~~~~g~l~G~NTD~~Gf~~~L~~~~-~----~--~----~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 94 VNTDGHLKAYNTDYIAIAKLLASYQ-V----P--P----DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred EeeCCEEEEEecCHHHHHHHHHhcC-C----C--C----CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 3467889999999999998885321 0 1 0 1379999999999999999999987 699999999988887
Q ss_pred Hhc-CCcccCCHHHhhcCCCEEEEecCChhH--HHHHhhCCCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 89 LDI-GAHLADSPHSLASQSDVVFSIVGYPSD--VRHVLLHPSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 89 ~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~--~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
.+. +.....+. ....+|+||-|+|-... .+.-.. .+ ...+.++.+++|+.-....+ .+.+..++.|+.
T Consensus 163 a~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~~~----pi~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~ 234 (272)
T PRK12550 163 AELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEADKL----AFPEAEIDAASVVFDVVALPAET--PLIRYARARGKT 234 (272)
T ss_pred HHHhCCcchhhc--ccccCCEEEECCccccCCCCccccC----CCCHHHcCCCCEEEEeecCCccC--HHHHHHHHCcCe
Confidence 664 22111111 12458999999964321 000000 11 12356778899988653322 455555666777
Q ss_pred EEec
Q 018694 165 AIDA 168 (351)
Q Consensus 165 ~v~~ 168 (351)
++++
T Consensus 235 ~i~G 238 (272)
T PRK12550 235 VITG 238 (272)
T ss_pred EeCC
Confidence 7755
No 164
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.38 E-value=2.6e-06 Score=77.32 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=67.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcc--cchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLS--KAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~--~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||||+|||+|.||..+++.+.+. +.++. ++++... +.......+...+++.+++..++|+|+.|+|.. ...+...
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~~ 79 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHVV 79 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHHH
Confidence 58999999999999999999875 45654 3344321 222222225677888888745699999999554 4444444
Q ss_pred CCCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhcCCCc
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASSKNCS 164 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~~~~~ 164 (351)
.. +..|+-++..+.+ .....+.+.+...+.|..
T Consensus 80 ----~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 80 ----PI---LKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred ----HH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 33 3456656655543 233345566666655654
No 165
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.37 E-value=1.3e-06 Score=78.30 Aligned_cols=186 Identities=18% Similarity=0.149 Sum_probs=113.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.||+|||+|+.|.+-|.+|.++|.+|++--|-... .+...+.|..+ .+.+|++..+|+|++.+ |+..-.+++..
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~-PDe~q~~vy~~--- 93 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILL-PDEQQKEVYEK--- 93 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeC-chhhHHHHHHH---
Confidence 68999999999999999999999998877665444 56666678876 47999999999999999 55555556663
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE-eccCCCCchh-----hccCceeEEe-cC--CHHHHHHHHHH
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI-DAPVSGGDRG-----AKTGTLAIFA-GG--DESVVQKLNPL 199 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v-~~pv~~~~~~-----~~~g~~~~~~-~g--~~~~~~~v~~l 199 (351)
.+.+.+.+++.+. .+.+..-+... ..+.+++.++ -+|-.++..- ...|..++++ -. +..+.+.....
T Consensus 94 ~I~p~Lk~G~aL~-FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~ 169 (338)
T COG0059 94 EIAPNLKEGAALG-FAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY 169 (338)
T ss_pred HhhhhhcCCceEE-eccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence 7888888887544 55443222211 1233455544 3455544321 1112222222 11 34566777777
Q ss_pred HHhhCc----eEEcC-------C-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018694 200 FALMGK----VNYMG-------G-SGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFL 251 (351)
Q Consensus 200 l~~~g~----~~~~g-------~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 251 (351)
...+|. ++.+. | .|--.+ +..+...++.-++..+...|.+++.++
T Consensus 170 AkgiGg~RaGvieTTFkeEtetDLfGEQ~v-------LcGgl~~li~agfetLvEaGy~PE~Ay 226 (338)
T COG0059 170 AKGIGGTRAGVIETTFKEETETDLFGEQAV-------LCGGLQALIKAGFETLVEAGYQPELAY 226 (338)
T ss_pred HHhcCCCccceEeeeeHHhhhcccccchhh-------hhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 788874 33221 1 122111 222333444455556678888886443
No 166
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.37 E-value=7.4e-07 Score=82.88 Aligned_cols=92 Identities=29% Similarity=0.420 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CCccc--CCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GAHLA--DSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~~~~--~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+||+|||+|.||..+++.|...| .+|++++|++++.+.+.+. |.... ++..+.+.++|+||.|++.+.. ...+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~ 256 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIVE 256 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHHH
Confidence 378999999999999999998855 6899999999887777665 44322 2456667889999999965544 33232
Q ss_pred CCCCCccc-CCCCCcEEEecCC
Q 018694 125 HPSSGALS-GLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~-~l~~~~~ii~~s~ 145 (351)
.... ...++.+++|++.
T Consensus 257 ----~~~~~~~~~~~~viDlav 274 (311)
T cd05213 257 ----RAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ----HHHhhCCCCCeEEEEeCC
Confidence 2211 1135779999985
No 167
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=1.7e-06 Score=78.96 Aligned_cols=73 Identities=27% Similarity=0.471 Sum_probs=61.0
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEe-CCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFN-RTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~d-r~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
-.+|+||| .|.||..||..|.++|++|++|+ |++ +++++++++|+||+|++++..++..+
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~--- 219 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW--- 219 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe---
Confidence 36899999 99999999999999999999995 653 46788889999999998877555433
Q ss_pred CCCcccCCCCCcEEEecCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+|+++||++..
T Consensus 220 -------lk~GavVIDvGin 232 (296)
T PRK14188 220 -------IKPGATVIDVGIN 232 (296)
T ss_pred -------ecCCCEEEEcCCc
Confidence 4689999998743
No 168
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.34 E-value=1e-06 Score=84.22 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=74.3
Q ss_pred CeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcccchhHHhcCCc---c---------------c--CCHHH---hhcC
Q 018694 50 TRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH---L---------------A--DSPHS---LASQ 105 (351)
Q Consensus 50 ~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~---~---------------~--~~~~~---~~~~ 105 (351)
|||.++|+|+||++ ++..|.++|++|+++|++++.++.++++|.. . . .+.++ .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 68999999999985 5888899999999999998888888887631 1 1 01122 2347
Q ss_pred CCEEEEecCChhHHHHHhhCCCCCcccCCC--------CCcEEEecCCCChhHHHHHHHHHh
Q 018694 106 SDVVFSIVGYPSDVRHVLLHPSSGALSGLR--------PGGIIVDMTTSEPSLASELSAAAS 159 (351)
Q Consensus 106 ~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~--------~~~~ii~~s~~~~~~~~~l~~~~~ 159 (351)
+|+|.+++ ++...+++.. .+.+.+. ++-.|++|-|+ ....+.+.+.+.
T Consensus 81 ~dlvt~~v-~~~~~~s~~~----~l~~~L~~R~~~~~~~~~~VlsceN~-~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAV-GPNILPFIAP----LIAKGLKKRKAQGNTKPLNIIACENM-IRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCC-CcccchhHHH----HHHHHHHHHHHcCCCCCCEEEecCCh-hhHHHHHHHHHH
Confidence 89999999 7776666665 5554442 23379999998 666666665543
No 169
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.33 E-value=5.9e-06 Score=79.77 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=70.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
-.+|+|||+|.+|..+|..+...|.+|+++++++.+.......|... .+.++++..+|+|++|+.....+..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~~------- 325 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIITL------- 325 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccCH-------
Confidence 36899999999999999999999999999999877654444456654 4688999999999999843332221
Q ss_pred CcccCCCCCcEEEecCCCC
Q 018694 129 GALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~ 147 (351)
+....++++.++++++.+.
T Consensus 326 e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 326 EHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HHHhccCCCcEEEEcCCCc
Confidence 2334567999999998774
No 170
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.31 E-value=1e-05 Score=73.51 Aligned_cols=115 Identities=25% Similarity=0.306 Sum_probs=73.6
Q ss_pred CCeEEEEc-cChhhHHHHHHHHH-CCCeEE-EEeCC-cccc-hhHHh------cCCcccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLN-AGYTVT-VFNRT-LSKA-QPLLD------IGAHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~-~g~~V~-~~dr~-~~~~-~~~~~------~g~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
||||+|+| +|.||..+++.+.+ .+++++ ++||. ++.. +.+.+ .|+..+++++++...+|+||.|+ ++.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT-~p~ 79 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFT-TPE 79 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECC-ChH
Confidence 47999999 69999999999986 567755 56754 2221 11111 25667788888856799999999 555
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCC-CChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTT-SEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~-~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
...+.+. .. +..+.-+|..++ .++...+++.+.....++.++-+|++
T Consensus 80 ~~~~~~~----~a---l~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 80 GVLNHLK----FA---LEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHHHH----HH---HHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 5554554 22 334554554333 34445556666655556767766665
No 171
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.31 E-value=8.8e-07 Score=71.99 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcC------CcccCCHHHhhcCCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIG------AHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g------~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
..|+.|||+|.+|.+++..|.+.|.. |++++|+.++++.+.+.- ....++..+.+.++|+||.|+|-+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 36899999999999999999999986 999999999988887652 2234556667789999999996553
No 172
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.30 E-value=3.9e-06 Score=77.73 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=64.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHH----hc--------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLL----DI--------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~----~~--------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.||..+|..++..|+ +|+++|++++..+... +. .+....+.++ +.++|+||+|++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 699999999999999999999887 8999999766433111 11 1334567766 68999999999632
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .+++++. ++.++. ++.++|..+|-
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~----~I~~~~-p~~~iIv~tNP 120 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTG----RIMEHS-PNPIIVVVSNP 120 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 2 2344554 555553 66778877774
No 173
>PRK06046 alanine dehydrogenase; Validated
Probab=98.30 E-value=1.5e-06 Score=81.29 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=81.6
Q ss_pred hccccccccch-hhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-CC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSLS-VSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-GY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g~-~V~~~dr~~~~~~~~ 88 (351)
-..+++++||. ++.+...++.+ +...+|+|||+|.+|...+..+... +. .|.+|+|++++.+.+
T Consensus 104 d~~~lT~~RTaA~sala~~~La~-------------~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~ 170 (326)
T PRK06046 104 DGTYLTDMRTGAAGGVAAKYLAR-------------KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKF 170 (326)
T ss_pred cCccHHHHHHHHHHHHHHHHhCC-------------CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHH
Confidence 56778888994 44544444432 1125799999999999999998743 33 688999999888776
Q ss_pred Hhc-----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 89 LDI-----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 89 ~~~-----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.+. + +..+++.++++. +|+|++|+|... .++. ..++++++.|..+++-.|.
T Consensus 171 ~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P~~~------~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 171 VERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---PVVK------AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred HHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---cEec------HHHcCCCCEEEecCCCCCc
Confidence 653 3 345678888886 999999996532 3332 1245789888888776554
No 174
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.30 E-value=1.5e-06 Score=80.30 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=82.4
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-CC-eEEEEeCCcccchhH
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-GY-TVTVFNRTLSKAQPL 88 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g~-~V~~~dr~~~~~~~~ 88 (351)
-..+++++|| .++.+...++ + .++ .+++|||+|.+|...+..+... +. +|.+|+|++++.+.|
T Consensus 93 d~~~lT~~RTaA~salaa~~l-~----~da---------~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f 158 (301)
T PRK06407 93 EANRLGQIRTGAVTAYATSIL-H----KNV---------ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAF 158 (301)
T ss_pred ccchHHHHHHHHHHHHHHHHh-h----cCC---------cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 5677889999 4445554433 2 121 4799999999999999988763 22 799999999998877
Q ss_pred Hhc-----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 89 LDI-----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 89 ~~~-----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.+. | +..++++++++.++|+|+.|++... .++. ..+++++..|..+.+-.|.
T Consensus 159 ~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P~~~------~~~l~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 159 AERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---PIFN------RKYLGDEYHVNLAGSNYPN 217 (301)
T ss_pred HHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---cEec------HHHcCCCceEEecCCCCCC
Confidence 554 3 4557899999999999999995332 3332 1245688888877765553
No 175
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.30 E-value=2.2e-06 Score=70.83 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=63.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH-HHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD-VRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~-~~~v~~~~~~ 128 (351)
+++.|+|+|.+|..+|+.|...|.+|++++++|-+.-+....|..+. +.++++.++|++|.++..... ..+.+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e~~~---- 98 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGEHFR---- 98 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HHHHH----
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHHHHH----
Confidence 57999999999999999999999999999999977666666688765 789999999999999955332 233343
Q ss_pred CcccCCCCCcEEEecCCCChh
Q 018694 129 GALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~ 149 (351)
.++++.++.+......+
T Consensus 99 ----~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 99 ----QMKDGAILANAGHFDVE 115 (162)
T ss_dssp ----HS-TTEEEEESSSSTTS
T ss_pred ----HhcCCeEEeccCcCcee
Confidence 35688888887765443
No 176
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.26 E-value=1.8e-06 Score=81.01 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=83.0
Q ss_pred hhccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-C-CeEEEEeCCcccchh
Q 018694 11 LRSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-G-YTVTVFNRTLSKAQP 87 (351)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g-~~V~~~dr~~~~~~~ 87 (351)
.....++++|| .++.+...++.+. ...+++|||+|..+...+..+... . .+|.+|+|++++.+.
T Consensus 103 ldg~~lT~~RTaA~sala~~~Lar~-------------da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~ 169 (346)
T PRK07589 103 SEMTLLTALRTAATSALAAKYLARP-------------DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAK 169 (346)
T ss_pred EcCccHHHHHHHHHHHHHHHHhccC-------------CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHH
Confidence 36677888999 5555555555331 125799999999999988877652 2 279999999998877
Q ss_pred HHhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 88 LLDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 88 ~~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
+.+. + +..+++.++++.++|+|+.|++ +.....+++ ..++++|+.|..+.+-.|.
T Consensus 170 ~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~-S~~~~Pvl~------~~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 170 LARNLAGPGLRIVACRSVAEAVEGADIITTVTA-DKTNATILT------DDMVEPGMHINAVGGDCPG 230 (346)
T ss_pred HHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC-CCCCCceec------HHHcCCCcEEEecCCCCCC
Confidence 6643 3 4457899999999999999994 322123333 1245788888877765443
No 177
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.25 E-value=2.4e-06 Score=69.90 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=63.2
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+ |.+|..++..|...+. ++.++|+++++++..... .........+.++++|+|+++...+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 79999999 9999999999998876 899999997765443221 1233445566788999999988432
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. ++..+. ++.+++..+|-
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~----~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAK----KIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHH----HHHHHS-TTSEEEE-SSS
T ss_pred ccccccHHHHHHHhHhHHHHHHH----HHHHhC-CccEEEEeCCc
Confidence 1 2344444 444444 66677766653
No 178
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.24 E-value=1.1e-05 Score=77.12 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=74.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.+|+|+|+|.+|..++..+...|.+|+++++++.+.......|.... +.++++..+|+||.+++....+..-
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------- 267 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------- 267 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH-------
Confidence 68999999999999999999999999999999877655555676544 5678889999999998554444431
Q ss_pred cccCCCCCcEEEecCCCCh-hHHHHHHHH
Q 018694 130 ALSGLRPGGIIVDMTTSEP-SLASELSAA 157 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~-~~~~~l~~~ 157 (351)
....++++.++++.+.... -....+.+.
T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 2235678999999887644 223344443
No 179
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.23 E-value=1.2e-05 Score=74.13 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=70.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCc-ccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTL-SKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~-~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
++||+|+|+|+||..++..+.+. +++++ ++++++ ++.. ...+.....+.++...++|+|++|+|...+.+.+..
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~- 79 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAP- 79 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHH-
Confidence 47999999999999999999765 67866 578885 3322 112444455677777889999999988777665554
Q ss_pred CCCCcccCCCCCcEEEecCCC---ChhHHHHHHHHHhc-CCCcEEe
Q 018694 126 PSSGALSGLRPGGIIVDMTTS---EPSLASELSAAASS-KNCSAID 167 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~---~~~~~~~l~~~~~~-~~~~~v~ 167 (351)
. +..+.-+|+..-. .+...+.+.+..++ .++.++.
T Consensus 80 ---~----L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 80 ---Y----FAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred ---H----HHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 2 3355556654321 23445566655553 2444443
No 180
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.22 E-value=3.3e-06 Score=78.26 Aligned_cols=137 Identities=21% Similarity=0.306 Sum_probs=94.8
Q ss_pred hhhhccccccccch-hhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC-C-CeEEEEeCCcccc
Q 018694 9 LVLRSRTAHSYSLS-VSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA-G-YTVTVFNRTLSKA 85 (351)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~-g-~~V~~~dr~~~~~ 85 (351)
++.-..++.++||. ++.+....+.++ ++ ..++|||+|.++......+..- + -+|.+|+|+++..
T Consensus 102 al~d~~~lTa~RTaAasavAa~~LA~~----da---------~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~ 168 (330)
T COG2423 102 ALLDATRLTALRTAAASAVAAKYLARK----DA---------STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA 168 (330)
T ss_pred EEecCccHHHHHHHHHHHHHHHHhccC----CC---------cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH
Confidence 33455678888994 445555555442 22 4699999999999999998763 2 2799999999998
Q ss_pred hhHHhc----C---CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHH
Q 018694 86 QPLLDI----G---AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAA 158 (351)
Q Consensus 86 ~~~~~~----g---~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~ 158 (351)
+.+... + +..+++.++++..+|+|+.|+|... .++. ..++++++.|..+.+-.|+- .++...+
T Consensus 169 e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---Pil~------~~~l~~G~hI~aiGad~p~k-~Eld~e~ 238 (330)
T COG2423 169 EAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---PVLK------AEWLKPGTHINAIGADAPGK-RELDPEV 238 (330)
T ss_pred HHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---Ceec------HhhcCCCcEEEecCCCCccc-ccCCHHH
Confidence 887644 2 4678899999999999999995433 3443 24567888888777654433 3443333
Q ss_pred hcC-CCcEEec
Q 018694 159 SSK-NCSAIDA 168 (351)
Q Consensus 159 ~~~-~~~~v~~ 168 (351)
-.+ +..++|.
T Consensus 239 l~ra~~vvvD~ 249 (330)
T COG2423 239 LARADRVVVDS 249 (330)
T ss_pred HHhcCeEEEcC
Confidence 323 3566665
No 181
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.21 E-value=9e-06 Score=78.03 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.+|+|+|+|.+|..++..+...|.+|+++++++.+.......|..+ .+.++++..+|+||.|+.....+..-
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~------- 284 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAE------- 284 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHH-------
Confidence 6899999999999999999999999999999988765555557654 46788889999999998554444321
Q ss_pred cccCCCCCcEEEecCCCC
Q 018694 130 ALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~ 147 (351)
....++++.++++.+...
T Consensus 285 ~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 285 HMEAMKDGAILANIGHFD 302 (425)
T ss_pred HHhcCCCCCEEEEcCCCC
Confidence 223457889999887654
No 182
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.18 E-value=7.3e-06 Score=65.26 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=58.8
Q ss_pred eEEEEcc-ChhhHHHHHHHHHC-CCeEEEE-eCCcccchhHHhcCCcc----cCCH--HHh-hcCCCEEEEecCChhHHH
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNA-GYTVTVF-NRTLSKAQPLLDIGAHL----ADSP--HSL-ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~-dr~~~~~~~~~~~g~~~----~~~~--~~~-~~~~DiIi~~vp~~~~~~ 120 (351)
||+|+|+ |.+|..++..|.+. ++++..+ +++.++.+.+...+-.. ..+. ++. ..++|+||+|+|+.. ..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 6999995 99999999999884 7776655 66544444444332111 1111 111 147999999995554 44
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+++. .+...+.+|+++||+++.
T Consensus 80 ~~~~----~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 80 EIAP----LLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHH----HHHhhhcCCCEEEECCcc
Confidence 4443 344456789999999965
No 183
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.17 E-value=3.3e-06 Score=80.35 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=78.9
Q ss_pred hccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHHC--CC-eEEEEeCCcccchh
Q 018694 12 RSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLNA--GY-TVTVFNRTLSKAQP 87 (351)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~~--g~-~V~~~dr~~~~~~~ 87 (351)
-..+++++|| .++.+...++.+. ...+++|||+|.++......+... .. +|.+|+|++++.+.
T Consensus 130 dg~~lTa~RTaA~salaa~~LAr~-------------da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~ 196 (379)
T PRK06199 130 SANLLSAYRTGAVPGVGARHLARK-------------DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDS 196 (379)
T ss_pred cCcchhhhHHHHHHHHHHHHhccC-------------CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence 5677888999 5555555555331 125799999999999999998763 23 79999999998877
Q ss_pred HHhc------C---CcccCCHHHhhcCCCEEEEecCChh---HHHHHhhCCCCCcccCCCCCcEEEec
Q 018694 88 LLDI------G---AHLADSPHSLASQSDVVFSIVGYPS---DVRHVLLHPSSGALSGLRPGGIIVDM 143 (351)
Q Consensus 88 ~~~~------g---~~~~~~~~~~~~~~DiIi~~vp~~~---~~~~v~~~~~~~i~~~l~~~~~ii~~ 143 (351)
|.+. + +..+++.++++.++|+|+.|++... ....+++ ..++++|+.|+..
T Consensus 197 f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~------~~~lkpG~hv~~i 258 (379)
T PRK06199 197 FATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVK------REWVKPGAFLLMP 258 (379)
T ss_pred HHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEec------HHHcCCCcEEecC
Confidence 6543 2 4457899999999999999994322 1122332 1245678776643
No 184
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.15 E-value=1.7e-05 Score=74.58 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=76.9
Q ss_pred CCCeEEEEccChhh-HHHHHHHHHCCC--e-EEEEeCCcccchhHHhc-CC-cccCCHHHhhcC--CCEEEEecCChhHH
Q 018694 48 TNTRIGWIGTGVMG-RSMCAHLLNAGY--T-VTVFNRTLSKAQPLLDI-GA-HLADSPHSLASQ--SDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~G~mG-~~ia~~L~~~g~--~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~~~~~~--~DiIi~~vp~~~~~ 119 (351)
+++||||||+|.++ ...+..+.+.+. + |.++|+++++++.+.++ |+ ..+++.++++++ .|+|++|+|+..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 46899999999665 558888887663 4 66779999998888776 66 478899999875 59999999888888
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCC---CChhHHHHHHHHHhcCCCcE
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTT---SEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~---~~~~~~~~l~~~~~~~~~~~ 165 (351)
+-++. .+ ..|+.|+ |=+ .+....+++.+..++.++.+
T Consensus 82 e~~~~----AL----~aGkhVl-~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 82 ELALA----AL----EAGKHVL-CEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HHHHH----HH----hcCCEEE-EcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 76665 33 3444433 112 23556666666666555433
No 185
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.14 E-value=9.7e-06 Score=75.25 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=63.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
+||+|||+|.+|..++..|+..| ++|+++|+++++.+.+... .........+.+.++|+||++++.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999999998 5899999998876554332 11222233345789999999996531
Q ss_pred ---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 ---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 ---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++.. .+..+ .++.+++..+|
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~----~i~~~-~~~~~vivvsN 118 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVP----KIKAS-GFDGIFLVASN 118 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEecC
Confidence 1344554 45443 35667777776
No 186
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.14 E-value=1.5e-05 Score=76.31 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=71.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|.... +.++.+..+|+||.|+.....+...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------- 274 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------- 274 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH-------
Confidence 68999999999999999999999999999999988877777787544 4577788999999999655444433
Q ss_pred cccCCCCCcEEEecCCC
Q 018694 130 ALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~ 146 (351)
....++++.++++.+..
T Consensus 275 ~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 275 HFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHhcCCCCcEEEEeCCC
Confidence 12346788899888754
No 187
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.13 E-value=4.5e-06 Score=75.75 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=87.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSG 129 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~ 129 (351)
+++||||+|.+|+.+|.++..-|..|+.||.-. ..+.....|+... +.+|+...+|+|=+-+|-..+++.++.. .
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~---~ 221 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLND---E 221 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCH---H
Confidence 679999999999999999999999999998642 2344555677765 7899999999999999988999988874 4
Q ss_pred cccCCCCCcEEEecCCCChhHHHHHHHHHhc
Q 018694 130 ALSGLRPGGIIVDMTTSEPSLASELSAAASS 160 (351)
Q Consensus 130 i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~ 160 (351)
-...+++|..||+++.|..-....+-+.+..
T Consensus 222 tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 222 TFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred HHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 4566889999999999887777777777753
No 188
>PLN00203 glutamyl-tRNA reductase
Probab=98.13 E-value=1.2e-05 Score=79.31 Aligned_cols=92 Identities=23% Similarity=0.339 Sum_probs=66.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--CCc----ccCCHHHhhcCCCEEEEecCCh--hHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--GAH----LADSPHSLASQSDVVFSIVGYP--SDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--g~~----~~~~~~~~~~~~DiIi~~vp~~--~~~~ 120 (351)
.||+|||+|.||..+++.|...|. +|++++|+.++.+.+.+. +.. ..++..+.+.++|+||.|++.+ ...+
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~ 346 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFLK 346 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeCH
Confidence 689999999999999999999997 699999999998888764 221 2345667788999999998433 2344
Q ss_pred HHhhCCCCCcccC---CCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSG---LRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~---l~~~~~ii~~s~ 145 (351)
+.+. .+... ..+..++||++-
T Consensus 347 e~l~----~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 347 EHVE----ALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred HHHH----HhhhcccccCCCeEEEEeCC
Confidence 4444 33211 012358888873
No 189
>PLN02494 adenosylhomocysteinase
Probab=98.12 E-value=1.8e-05 Score=76.34 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=69.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHH-HHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDV-RHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~-~~v~~~~~~ 128 (351)
.+|+|+|+|.+|..+|..+...|.+|+++++++.+.......|.... +.++++..+|+||.|+.....+ .+.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~L----- 328 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDHM----- 328 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHHH-----
Confidence 68999999999999999999999999999999876555555566544 6788889999999988443322 3333
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..++++.++++++..
T Consensus 329 ---~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 329 ---RKMKNNAIVCNIGHF 343 (477)
T ss_pred ---hcCCCCCEEEEcCCC
Confidence 356789999999884
No 190
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.11 E-value=2.3e-05 Score=82.67 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCC-Ce-------------EEEEeCCcccchhHHhc--C---Ccc-cCCHHHhh---c
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAG-YT-------------VTVFNRTLSKAQPLLDI--G---AHL-ADSPHSLA---S 104 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g-~~-------------V~~~dr~~~~~~~~~~~--g---~~~-~~~~~~~~---~ 104 (351)
.|+||+|||+|.||..++..|++.. .+ |+++|++.++++.+.+. + +.. +.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4679999999999999999998742 23 89999998888777653 3 233 45656554 5
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++|+||+|+|...+.. ++. . .+..++.+++.+-. .....++.+...+.|+.++.
T Consensus 648 ~~DaVIsalP~~~H~~-VAk----a---AieaGkHvv~eky~-~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 648 QVDVVISLLPASCHAV-VAK----A---CIELKKHLVTASYV-SEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred CCCEEEECCCchhhHH-HHH----H---HHHcCCCEEECcCC-HHHHHHHHHHHHHcCCEEEE
Confidence 7999999997765543 333 1 23356667766633 55556677777666766654
No 191
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.10 E-value=3e-06 Score=78.81 Aligned_cols=119 Identities=22% Similarity=0.282 Sum_probs=73.4
Q ss_pred hhccccccccc-hhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccChhhHHHHHHHHH-CCC-eEEEEeCCcccchh
Q 018694 11 LRSRTAHSYSL-SVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGVMGRSMCAHLLN-AGY-TVTVFNRTLSKAQP 87 (351)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~ia~~L~~-~g~-~V~~~dr~~~~~~~ 87 (351)
.-..+++++|| .++.+...++.+ .+ ..+++|||+|..|...+..+.. .+. +|.+|+|++++.+.
T Consensus 102 ~dg~~lT~~RTaA~sala~~~La~----~~---------~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~ 168 (313)
T PF02423_consen 102 MDGTWLTALRTAAVSALAARYLAR----PD---------ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEA 168 (313)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHS-----TT-----------EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHH
T ss_pred ecccchhhhHHHHHHHHHHHHhCc----CC---------CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHH
Confidence 35667888888 444544444322 11 2479999999999999998875 333 79999999998877
Q ss_pred HHhc----C--CcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh
Q 018694 88 LLDI----G--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS 149 (351)
Q Consensus 88 ~~~~----g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~ 149 (351)
|.+. + +..+++.++++.++|+|+.|+|.... ..++. ..++.+++.|..+....|.
T Consensus 169 ~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P~~~------~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 169 FAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-APVFD------AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp HHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EESB-------GGGS-TT-EEEE-S-SSTT
T ss_pred HHHhhccccccceeccchhhhcccCCEEEEccCCCCC-Ccccc------HHHcCCCcEEEEecCCCCc
Confidence 7654 3 44578999999999999999944331 12333 1356789998888876553
No 192
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.09 E-value=2.6e-05 Score=72.79 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc--------C----CcccCCHHHhhcCCCEEEEecCC-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI--------G----AHLADSPHSLASQSDVVFSIVGY- 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~~~~~~~DiIi~~vp~- 115 (351)
+||+|||+|.||..++..++..| .++.++|+++++.+...-. + +...++.+ .+.++|+||++...
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~ 84 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGVQ 84 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 69999999999999999999888 5899999998764331110 1 22234555 67899999999922
Q ss_pred --h------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 --P------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 --~------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..+++++. .+..+ .++.++|..+|-
T Consensus 85 ~~~g~~r~dll~~n~~i~~~i~~----~i~~~-~p~a~vivvsNP 124 (319)
T PTZ00117 85 RKEEMTREDLLTINGKIMKSVAE----SVKKY-CPNAFVICVTNP 124 (319)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH----HHHHH-CCCeEEEEecCh
Confidence 2 33455665 55554 467777777764
No 193
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=1.4e-05 Score=72.47 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=60.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|+|||. |.||..++..|.++|+.|++|... +.++.+.++++|+||+|++++..++..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~----- 219 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF----- 219 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----
Confidence 68999999 999999999999999999999321 1267888899999999998877666543
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
+.+|+++||++..
T Consensus 220 -----ik~GavVIDvgin 232 (284)
T PRK14179 220 -----VKEGAVVIDVGMN 232 (284)
T ss_pred -----ccCCcEEEEecce
Confidence 4689999998843
No 194
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.04 E-value=1.3e-05 Score=74.43 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=49.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchh----HHhcC-----Ccc-cCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQP----LLDIG-----AHL-ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~----~~~~g-----~~~-~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+|.+|..+|..|+..| .+|.++|+++++.+. +.... ... ..+. +.+.++|+||+|++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 68999999999999999999999 589999999876653 22110 111 2344 5578999999999653
No 195
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.04 E-value=8.6e-05 Score=56.30 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHH
Q 018694 213 GKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGIC 292 (351)
Q Consensus 213 g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 292 (351)
..+...|++.|.+....+++++|...+|++.|++..++.+.+....... +.+.. -.+|+.-.++.||...+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~-------~~~~~--pg~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG-------PHYLR--PGPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT-------SSS-S---SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc-------cccCC--CCCCCCCcchhhhHHHH
Confidence 3678899999999999999999999999999999999999987764321 11111 11345566789999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHH
Q 018694 293 LKECQNMGLALPGLALAQQLYL 314 (351)
Q Consensus 293 ~~~a~~~gv~~p~~~~~~~l~~ 314 (351)
+..++++|.+.++++.+.+.-.
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999998888776543
No 196
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.03 E-value=1.5e-05 Score=77.14 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=50.8
Q ss_pred CeEEEEccChhhHHHHH--HH----HHCCCeEEEEeCCcccchhHHhc------------CCcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGRSMCA--HL----LNAGYTVTVFNRTLSKAQPLLDI------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~--~L----~~~g~~V~~~dr~~~~~~~~~~~------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
+||+|||+|.||.+.+. .+ ...|++|++||+++++++..... .+..+++..+++.++|+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998665 33 34578999999999876654332 13456788889999999999
Q ss_pred ecC
Q 018694 112 IVG 114 (351)
Q Consensus 112 ~vp 114 (351)
+++
T Consensus 81 ai~ 83 (423)
T cd05297 81 TIQ 83 (423)
T ss_pred eeE
Confidence 995
No 197
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.02 E-value=1.3e-05 Score=76.17 Aligned_cols=66 Identities=32% Similarity=0.434 Sum_probs=56.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-C--CcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-G--AHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g--~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
.|+.|||+|.||...+++|.+.|. .|++.+|+.++++.++++ | +...++..+.+.++|+||.|+..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC
Confidence 679999999999999999999995 799999999999988877 4 33345666778899999999843
No 198
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.01 E-value=2.6e-05 Score=72.55 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=51.4
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 47 PTNTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 47 ~~~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
+..+||+|||+|.+|..++..|...|. ++.++|++.++++..... ......+.-+.++++|+||++...
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 344799999999999999999998888 899999988765443221 122233334557899999998844
No 199
>PRK11579 putative oxidoreductase; Provisional
Probab=98.01 E-value=5.5e-05 Score=71.49 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCeEEEEccChhhHH-HHHHHHH-CCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLN-AGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~-~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~ 123 (351)
++||||||+|.+|.. .+..+.. .+.+++ ++|+++++.+. ...+...+++.+++++ +.|+|++|+|+..+.+.+.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 479999999999984 5666655 356765 67988765431 1114567889999986 5799999998888777666
Q ss_pred hCCCCCcccCCCCCcEEE-ecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 124 LHPSSGALSGLRPGGIIV-DMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii-~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
. .+ ..|+.|+ .-- ..+....+++.+...+.++.+
T Consensus 83 ~----al----~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 83 A----AL----EAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred H----HH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 5 22 3444444 311 123555666766666555443
No 200
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00026 Score=61.15 Aligned_cols=190 Identities=18% Similarity=0.139 Sum_probs=116.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEE-EEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+.++|||.|..|.+....-...++.+. +..|++++.+.+.+.-.-.-.+.+...+-.+++|+-+|. ..+..+.-
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd-~~~s~vaa---- 85 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPD-ALYSGVAA---- 85 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchH-HHHHHHHH----
Confidence 789999999999995544444444544 336777777666554111111222223345788888843 33333332
Q ss_pred CcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCC---CCchhhc--cCceeEEecCCHHHHHHHHHHHHh
Q 018694 129 GALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVS---GGDRGAK--TGTLAIFAGGDESVVQKLNPLFAL 202 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~---~~~~~~~--~g~~~~~~~g~~~~~~~v~~ll~~ 202 (351)
. ..-.+++++++||.-. ...+...+.+.|+.-..- |.+ |.+...+ .++...+..+|+.....++.+...
T Consensus 86 ~--~~~rpg~iv~HcSga~---~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~e 160 (289)
T COG5495 86 T--SLNRPGTIVAHCSGAN---GSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALE 160 (289)
T ss_pred h--cccCCCeEEEEccCCC---chhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHH
Confidence 1 2346899999988532 335555555555433222 322 3333322 344444446788888889999998
Q ss_pred hCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018694 203 MGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELF 250 (351)
Q Consensus 203 ~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 250 (351)
+|. ++.+. .+.-.....+.|...+.....+.++..+.+..|++..++
T Consensus 161 mgg~~f~V~-~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~ 208 (289)
T COG5495 161 MGGEPFCVR-EEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPEL 208 (289)
T ss_pred hCCCceeec-hhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcce
Confidence 887 55443 355556677778888888888999999999999886544
No 201
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.99 E-value=2.6e-05 Score=62.00 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=58.3
Q ss_pred eEEEEc-cChhhHHHHHHHHHCCC-e-EEEEeCCcccchhHHhc--------CCcccCCHHHhhcCCCEEEEecCChhHH
Q 018694 51 RIGWIG-TGVMGRSMCAHLLNAGY-T-VTVFNRTLSKAQPLLDI--------GAHLADSPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~~g~-~-V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
||+||| .|.+|..+.+.|.+.-. + +.++.++.+.-+.+... .+.+.+...+.+.++|+||+|+ +....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~-~~~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLAL-PHGAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-S-CHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecC-chhHH
Confidence 799999 99999999999998433 4 44566665333333322 1223332334458999999999 66666
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+... .+ +.++..|||++..
T Consensus 80 ~~~~~----~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELAP----KL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHHH----HH---HHTTSEEEESSST
T ss_pred HHHHH----HH---hhCCcEEEeCCHH
Confidence 66665 44 4578899999864
No 202
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.98 E-value=5.2e-05 Score=75.49 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=89.6
Q ss_pred ccccccccchhhHHHHHHHHhhhccccCCC-CCCCCCCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 13 SRTAHSYSLSVSSLVTLLLRRRSMATVAST-DPVCPTNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
.|.|+||+|+..++.+.+... ....+... ........++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+.
T Consensus 343 ~g~l~G~NTD~~G~~~~l~~~-~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 343 DGKLVGYNTDYIGAISAIEDG-LRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEEcccHHHHHHHHHhh-hcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 578999999999999988531 11111110 0011122579999999999999999999999999999998888777654
Q ss_pred -CCcc--cCCHHHh-hcCCCEEEEecCChhHHHHHhhCCCCCc-ccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 92 -GAHL--ADSPHSL-ASQSDVVFSIVGYPSDVRHVLLHPSSGA-LSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 92 -g~~~--~~~~~~~-~~~~DiIi~~vp~~~~~~~v~~~~~~~i-~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+... ..+..+. ...+|+|+-|+|-...-. .-.. .+ ...+.+..+++|+.-....+ .+.+..++.|+..+
T Consensus 422 l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~-~~~~---pl~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 495 (529)
T PLN02520 422 VGGQALTLADLENFHPEEGMILANTTSVGMQPN-VDET---PISKHALKHYSLVFDAVYTPKIT--RLLREAEESGAIIV 495 (529)
T ss_pred hCCceeeHhHhhhhccccCeEEEecccCCCCCC-CCCC---cccHhhCCCCCEEEEeccCCCcC--HHHHHHHHCCCeEe
Confidence 2111 1122221 234678887775433110 0000 01 12345677889887653322 34444455676666
Q ss_pred ec
Q 018694 167 DA 168 (351)
Q Consensus 167 ~~ 168 (351)
++
T Consensus 496 ~G 497 (529)
T PLN02520 496 SG 497 (529)
T ss_pred Cc
Confidence 54
No 203
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.96 E-value=7.2e-05 Score=62.92 Aligned_cols=72 Identities=26% Similarity=0.477 Sum_probs=56.4
Q ss_pred CeEEEEccChh-hHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.||.|||+|.| |..+++.|.+.|.+|++++|+. .+..+.+.++|+||.|++.+. + +..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~-i---i~~--- 103 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG-L---VKG--- 103 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc-e---ecH---
Confidence 68999999997 8889999999999999999873 355677889999999996554 2 220
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
..+.++.++||++.
T Consensus 104 ---~~~~~~~viIDla~ 117 (168)
T cd01080 104 ---DMVKPGAVVIDVGI 117 (168)
T ss_pred ---HHccCCeEEEEccC
Confidence 12356788999884
No 204
>PRK04148 hypothetical protein; Provisional
Probab=97.95 E-value=4.4e-05 Score=61.23 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=70.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-----cCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-----ADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-----~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||.+||+| .|..+|..|.+.|++|+..|.+++.++..++.+..+ .....+.-.++|+|..+=|+++-.+.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 689999999 999999999999999999999999888877775432 2233456678999999996665555444
Q ss_pred CCCCCcccCCCCCcEEEecCCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSE 147 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~ 147 (351)
.+...+.-+-+|..+++-.
T Consensus 96 ----~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 96 ----ELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ----HHHHHcCCCEEEEcCCCCC
Confidence 4666666666677666544
No 205
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=2.2e-05 Score=69.47 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=54.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh--cCCc---ccCC----HHHh-hcCCCEEEEecCChhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD--IGAH---LADS----PHSL-ASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~--~g~~---~~~~----~~~~-~~~~DiIi~~vp~~~~~ 119 (351)
|+|.|||+|.+|..+|+.|.+.||+|+++++++++++++.. .+.. ...+ +.++ +.++|+++.++ .....
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t-~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT-GNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee-CCCHH
Confidence 78999999999999999999999999999999999888544 2211 1122 2232 46799999999 44444
Q ss_pred HHHhh
Q 018694 120 RHVLL 124 (351)
Q Consensus 120 ~~v~~ 124 (351)
..++-
T Consensus 80 N~i~~ 84 (225)
T COG0569 80 NSVLA 84 (225)
T ss_pred HHHHH
Confidence 43443
No 206
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.93 E-value=1.6e-05 Score=76.85 Aligned_cols=68 Identities=29% Similarity=0.459 Sum_probs=54.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-CeEEEEeCCcccchhHHhc-CCcc--cCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-YTVTVFNRTLSKAQPLLDI-GAHL--ADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
.+|+|||+|.||..++..|...| .+|++++|+.++.+.+.+. |... ..+..+.+.++|+||.|++.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 68999999999999999999999 6899999998887766554 3221 2355677789999999995443
No 207
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.93 E-value=7.7e-05 Score=69.26 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc-----------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI-----------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+||+|||+|.+|..+|..|...|. ++.++|+++++++..... .+....+.++ ++++|+||++...+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999988776 799999987654332211 1222356665 78999999977432
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .++++.. .+..+ .++.+++..+|-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~----~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIP----KLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCcEEEEccCh
Confidence 1 1344444 45444 467777777763
No 208
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.93 E-value=4.4e-05 Score=70.69 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=59.5
Q ss_pred EEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH----Hhc----C----CcccCCHHHhhcCCCEEEEecCCh--
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL----LDI----G----AHLADSPHSLASQSDVVFSIVGYP-- 116 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~----~~~----g----~~~~~~~~~~~~~~DiIi~~vp~~-- 116 (351)
|+|||+|.||..+|..++..|+ +|+++|++++..+.. .+. + +....+.+ .+.+||+||+++..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999999998876 999999997754221 111 1 22234544 578999999988422
Q ss_pred -------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 -------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 -------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
...++++. ++.... ++.++|..+|-
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~----~i~~~~-p~~~iIv~sNP 117 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAE----NIKKYA-PNAIVIVVTNP 117 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 12345555 555544 55666666663
No 209
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.90 E-value=6.4e-05 Score=70.10 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=47.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhH-----Hh---cC----CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPL-----LD---IG----AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~-----~~---~g----~~~~~~~~~~~~~~DiIi~~v 113 (351)
+||+|||+|.||..+|..++..|+ +|+++|+++++.+.. .. .+ +...++. +.+.++|+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 699999999999999999999996 899999998754211 11 01 2223565 4678999999977
No 210
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.90 E-value=1.3e-05 Score=77.84 Aligned_cols=68 Identities=34% Similarity=0.512 Sum_probs=54.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-CCcc--cCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-GAHL--ADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
++|+|||+|.||..++..|...|. +|++++|++++.+.+... |... ..+..+.+.++|+||.|++.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 689999999999999999999997 799999999887766654 4222 2345566788999999996443
No 211
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.88 E-value=4.7e-05 Score=73.30 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=55.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-C-Cc--ccCCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-G-AH--LADSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-g-~~--~~~~~~~~~~~~DiIi~~vp~~~ 117 (351)
.||.|||+|.||..++..|...|. +|++++|+.++.+.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 579999999999999999999986 799999999988888765 2 22 22445667889999999995443
No 212
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.87 E-value=0.00025 Score=66.52 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=75.0
Q ss_pred CeEEEEccChhhHHHHHHHHHC--CCeEE-EEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCC----hhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA--GYTVT-VFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGY----PSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~--g~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~----~~~~~~ 121 (351)
.||+|||+ .||...+..+.+. +++++ ++|+++++.+.+.++ |+..+++.++++.+.|++++++|. ..+.+-
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 68999999 6899999999875 46644 779999999888776 788889999999888999998843 244333
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
+.. .+..|+.|+.=--......+++.+...++++.+.
T Consensus 83 a~~--------aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 ARA--------LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHH--------HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 332 1234443332111225666677777776676554
No 213
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.87 E-value=2.8e-05 Score=64.93 Aligned_cols=66 Identities=27% Similarity=0.266 Sum_probs=50.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCcccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+ |..|+.|++...++||+|+.+.||++++..+... .+.--+...+.+..-|+||.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 79999987 9999999999999999999999999987664211 121122334567788999999843
No 214
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.86 E-value=1.9e-05 Score=75.15 Aligned_cols=94 Identities=20% Similarity=0.373 Sum_probs=65.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCcc---c---CCHHHhhcCCCEEEEecCCh-hHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAHL---A---DSPHSLASQSDVVFSIVGYP-SDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~~---~---~~~~~~~~~~DiIi~~vp~~-~~~~~ 121 (351)
.||.|||+|.+|...++.+...|.+|+++|+++++.+.+... +..+ . .++.+.+.++|+||.|++-+ .....
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~ 247 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPK 247 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCc
Confidence 579999999999999999999999999999998887776554 2211 1 23456678999999997321 11111
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
++.. +....++++.+|+|++..
T Consensus 248 lit~---~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 248 LVSN---SLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CcCH---HHHhcCCCCCEEEEEecC
Confidence 1110 222335688899998853
No 215
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.84 E-value=0.00017 Score=56.60 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=55.1
Q ss_pred EEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-C---CHHH----hhcCCCEEEEecCChhHHHHHh
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-D---SPHS----LASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~---~~~~----~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
|.|+|+|.+|..+++.|.+.+.+|++++++++..+.+.+.|..+. . +.+. -+.+++.++++++.+.....++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 578999999999999999977799999999999999988875431 1 2211 2368999999996665555555
Q ss_pred h
Q 018694 124 L 124 (351)
Q Consensus 124 ~ 124 (351)
.
T Consensus 81 ~ 81 (116)
T PF02254_consen 81 L 81 (116)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.82 E-value=4.2e-05 Score=73.43 Aligned_cols=108 Identities=25% Similarity=0.262 Sum_probs=69.1
Q ss_pred EEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc--C-------Ccc--cCCHHHhhcCCCEEEEecCChhH
Q 018694 52 IGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI--G-------AHL--ADSPHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~--g-------~~~--~~~~~~~~~~~DiIi~~vp~~~~ 118 (351)
|.|||+|.+|..++..|.+.+. +|++.||+.++++.+.+. + +.+ ..++.++++++|+||.|+|+. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 7899999999999999998764 899999999998887653 1 111 112456788999999999554 4
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
...+++ .. +..+..+||.+. .......+.+...+.++.++.+
T Consensus 80 ~~~v~~----~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 80 GEPVAR----AC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp HHHHHH----HH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S
T ss_pred hHHHHH----HH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeC
Confidence 444554 22 346777888432 1333445566666667766643
No 217
>PRK10206 putative oxidoreductase; Provisional
Probab=97.80 E-value=0.00013 Score=69.00 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCeEEEEccChhhH-HHHHHHHH--CCCeEE-EEeCCcccchhHHhc--CCcccCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGR-SMCAHLLN--AGYTVT-VFNRTLSKAQPLLDI--GAHLADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~-~ia~~L~~--~g~~V~-~~dr~~~~~~~~~~~--g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
|.||||||+|.++. ..+..+.. .+++|+ ++|+++++. .+.++ ++..+++.+++++ +.|+|++|+|+..+.+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~ 79 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 79 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence 47999999999775 34454533 356765 789987654 33333 3667889999986 5799999998888777
Q ss_pred HHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcE
Q 018694 121 HVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~ 165 (351)
-+.. .+ ..|+ +++.-- ..+....+++.+...+.++.+
T Consensus 80 ~~~~----al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 80 YAKR----AL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred HHHH----HH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 6655 22 2333 333311 122555667777666655544
No 218
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.79 E-value=5.3e-05 Score=65.48 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=62.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-----CCc--c--cCCH---HHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-----GAH--L--ADSP---HSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-----g~~--~--~~~~---~~~~~~~DiIi~~vp~~ 116 (351)
+++.|+|. |.+|..++..|.+.|++|++++|+.++.+.+.+. +.. . ..+. .+.++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 68999985 9999999999999999999999998887666542 111 1 1222 35677899999999655
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
..... .......++.+++|+...
T Consensus 109 ~~~~~-------~~~~~~~~~~vv~D~~~~ 131 (194)
T cd01078 109 VELLE-------KLAWAPKPLAVAADVNAV 131 (194)
T ss_pred ceech-------hhhcccCceeEEEEccCC
Confidence 53111 111223346789998764
No 219
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.78 E-value=0.00018 Score=63.63 Aligned_cols=108 Identities=13% Similarity=0.182 Sum_probs=70.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC---eEEEEeCC----cccc-------hhHHhc-C-CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY---TVTVFNRT----LSKA-------QPLLDI-G-AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~---~V~~~dr~----~~~~-------~~~~~~-g-~~~~~~~~~~~~~~DiIi~~v 113 (351)
+||.|+|+|.+|..++..|.+.|. +|+++||+ .++. +.+.+. + .....++.+.+.++|++|-++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS 105 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence 689999999999999999999997 49999998 4443 223222 1 111135667778899999999
Q ss_pred CChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCc-EEec
Q 018694 114 GYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCS-AIDA 168 (351)
Q Consensus 114 p~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~-~v~~ 168 (351)
|.....++.++ .+ .++.++++++|-.+ +.+.+...+.++. +.++
T Consensus 106 ~~G~~~~~~l~----~m----~~~~ivf~lsnP~~---e~~~~~A~~~ga~i~a~G 150 (226)
T cd05311 106 RPGVVKKEMIK----KM----AKDPIVFALANPVP---EIWPEEAKEAGADIVATG 150 (226)
T ss_pred CCCCCCHHHHH----hh----CCCCEEEEeCCCCC---cCCHHHHHHcCCcEEEeC
Confidence 64433344444 33 36778888885322 3344444445664 5544
No 220
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.77 E-value=0.00016 Score=65.68 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=64.3
Q ss_pred EEEEcc-ChhhHHHHHHHHHCC----CeEEEEeCCcccchhHHhc-----------CCcccCCHHHhhcCCCEEEEecCC
Q 018694 52 IGWIGT-GVMGRSMCAHLLNAG----YTVTVFNRTLSKAQPLLDI-----------GAHLADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 52 I~iIG~-G~mG~~ia~~L~~~g----~~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~~~~~~~DiIi~~vp~ 115 (351)
|+|||+ |.||..++..|+..| .+|+++|+++++++..... .+...+++.+.+.++|+||++...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999888 6999999998776443221 233345667888999999996622
Q ss_pred h---------------hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 P---------------SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~---------------~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+ ..++++.. ++..+. ++.+++..+|-
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~----~i~~~~-p~a~~i~~tNP 121 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGD----NIEKYS-PDAWIIVVSNP 121 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHH----HHHHHC-CCeEEEEecCc
Confidence 1 12455555 555544 77778777653
No 221
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.77 E-value=0.0015 Score=57.37 Aligned_cols=109 Identities=9% Similarity=0.053 Sum_probs=71.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc----------ccchhHHhcC-CcccC-----CHHHhh-cCCCEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL----------SKAQPLLDIG-AHLAD-----SPHSLA-SQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~----------~~~~~~~~~g-~~~~~-----~~~~~~-~~~DiIi 110 (351)
.+||+|.|+|++|..+++.|.+.|. .|.+.|.+. +.++...+.+ +.... +.+++. .+||+++
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVli 102 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFA 102 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEe
Confidence 4799999999999999999999988 466678876 4444443332 22111 112222 4799999
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.|.+......+... ++ +-++|+...|. |.+. +-.+.+.++|+.|++-
T Consensus 103 paA~~~~i~~~~a~----~l-----~a~~V~e~AN~-p~t~-~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 103 PCALGNVIDLENAK----KL-----KAKVVAEGANN-PTTD-EALRILHERGIVVAPD 149 (217)
T ss_pred eccccCccChhhHh----hc-----CccEEEeCCCC-CCCH-HHHHHHHHCCcEEECh
Confidence 99955544444443 33 35578888886 4333 5566777788887754
No 222
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.76 E-value=0.00012 Score=69.12 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=57.0
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHC-CCeEEE-EeCCcccchhHHhc-C-Cc-----ccCCHHH-hhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNA-GYTVTV-FNRTLSKAQPLLDI-G-AH-----LADSPHS-LASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~-~dr~~~~~~~~~~~-g-~~-----~~~~~~~-~~~~~DiIi~~vp~~ 116 (351)
+|+||+|||+ |.+|..+++.|.+. +++++. +++. +..+.+.+. + +. ...+.++ ...++|+||+|+|..
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 4689999997 99999999999875 567654 4533 332223221 0 11 1222222 446799999999665
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. ..++.. .+. ..|..|||+|+.
T Consensus 80 ~-~~~~v~----~a~---~aG~~VID~S~~ 101 (343)
T PRK00436 80 V-SMDLAP----QLL---EAGVKVIDLSAD 101 (343)
T ss_pred H-HHHHHH----HHH---hCCCEEEECCcc
Confidence 4 444444 332 368899999974
No 223
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.75 E-value=0.00012 Score=70.95 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--------C--Ce-EEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--------G--YT-VTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVGY 115 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--------g--~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp~ 115 (351)
++||+|||+|.+|..+++.|.+. | .+ +.+++++.++.+.+...+...+++.+++++ +.|+|+.|++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 47999999999999999888653 2 34 446788876654332234566788999885 47999999854
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCC-ChhHHHHHHHHHhcCCCcEE
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTS-EPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~-~~~~~~~l~~~~~~~~~~~v 166 (351)
.....+.+. .++..|+.|+..... .....+++.+...+.++.+.
T Consensus 83 ~~~~~~~~~-------~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 83 IEPARELIL-------KALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred chHHHHHHH-------HHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 333333332 334577777754431 12334566666666677544
No 224
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.74 E-value=0.00017 Score=65.99 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=62.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccc--hhHHhcCCcc-cCCHHHhhc-----CCCEEEEecCChhH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKA--QPLLDIGAHL-ADSPHSLAS-----QSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~--~~~~~~g~~~-~~~~~~~~~-----~~DiIi~~vp~~~~ 118 (351)
++||+|||+|++|..+...+.+. +.++. ++|++++.. +..++.|+.. .++.+++++ +.|+||+|+|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 47899999999999988777753 45655 678887642 3334447765 467888874 58999999966554
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+ ... .. ...|+.+||.+.
T Consensus 84 ~e-~a~----~a---~eaGk~VID~sP 102 (302)
T PRK08300 84 VR-HAA----KL---REAGIRAIDLTP 102 (302)
T ss_pred HH-HHH----HH---HHcCCeEEECCc
Confidence 44 333 22 346788888775
No 225
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.74 E-value=0.00016 Score=53.68 Aligned_cols=61 Identities=18% Similarity=0.390 Sum_probs=47.8
Q ss_pred CeEEEEccChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH-hhCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV-LLHPS 127 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v-~~~~~ 127 (351)
+|++|+|+|.+|..++..|.+. +.+|.+||| |++|.|++.+..+.+- +.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~~~~--- 74 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEEATA--- 74 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHHHHH---
Confidence 6899999999999999999998 568999988 9999999665544431 22
Q ss_pred CCcccCCCCCcEEEecC
Q 018694 128 SGALSGLRPGGIIVDMT 144 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s 144 (351)
.+.++.+|+++.
T Consensus 75 -----~~~~~~~v~~~a 86 (86)
T cd05191 75 -----KINEGAVVIDLA 86 (86)
T ss_pred -----hcCCCCEEEecC
Confidence 235677888763
No 226
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.74 E-value=0.00018 Score=65.54 Aligned_cols=87 Identities=22% Similarity=0.377 Sum_probs=61.3
Q ss_pred CeEEEEccChhhHHHHHHHHH-CCCeEE-EEeCCcccch--hHHhcCCcc-cCCHHHhhc--CCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQ--PLLDIGAHL-ADSPHSLAS--QSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~--~~~~~g~~~-~~~~~~~~~--~~DiIi~~vp~~~~~~~v 122 (351)
+||+|||+|.+|..++..+.+ .++++. ++++++++.. ...+.|+.. .++.++++. +.|+|++|+|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 689999999999998777764 456755 6788887533 333447654 457788775 578999999777666654
Q ss_pred hhCCCCCcccCCCCCcEEEecC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s 144 (351)
.. .+..|+.+++.+
T Consensus 82 ~~--------al~aGk~VIdek 95 (285)
T TIGR03215 82 RL--------LAELGKIVIDLT 95 (285)
T ss_pred HH--------HHHcCCEEEECC
Confidence 43 234677787766
No 227
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.72 E-value=0.00021 Score=56.40 Aligned_cols=102 Identities=22% Similarity=0.233 Sum_probs=70.0
Q ss_pred CeEEEEc----cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIG----TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG----~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
++|+||| -+.+|..+...|.+.|++|+.++...+.+ .|...+.++.|.-...|++++|+ ++..+.++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~-~~~~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCV-PPDKVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEc-CHHHHHHHHH-
Confidence 3699999 68999999999999999999888765443 25778888888557899999999 8888888887
Q ss_pred CCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v 166 (351)
++... ..+.+++..+ ...+++.+.+.+.++.++
T Consensus 74 ---~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 74 ---EAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp ---HHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred ---HHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence 66543 3455555444 334577777777788776
No 228
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.70 E-value=0.00011 Score=72.08 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=53.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh-cCCccc-------CCHHHh-hcCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHLA-------DSPHSL-ASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~-~g~~~~-------~~~~~~-~~~~DiIi~~vp~~~ 117 (351)
|||.|+|+|.+|..+++.|.+.|++|+++++++++.+.+.+ .++... ...+++ +.++|.+|++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 68999999999999999999999999999999998888766 333221 122333 568999999995433
No 229
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.68 E-value=0.00027 Score=65.94 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCc--ccchhHHhc----------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTL--SKAQPLLDI----------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~--~~~~~~~~~----------g~~~~~~~~~~~~~~Di 108 (351)
+.||+|||+ |.+|..++..|...|. +++++|+++ ++++..... +..+..+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 479999998 9999999999998875 799999965 323222111 12333455567889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. ++..+..++.+++..+|
T Consensus 83 VVitAG~~~k~g~tR~dll~~Na~i~~~i~~----~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 83 ALLVGAFPRKPGMERADLLSKNGKIFKEQGK----ALNKVAKKDVKVLVVGN 130 (323)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHhhCCCCeEEEEeCC
Confidence 999884321 2455555 56665554777777775
No 230
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.67 E-value=0.00014 Score=68.34 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=57.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHh-------------------cCCcccCCHHHhhcCCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLD-------------------IGAHLADSPHSLASQSD 107 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~D 107 (351)
|+||+|+|+|.||..+++.+.+. +++++ +++++++....+.. .++.+..+.+++..++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 57999999999999999988753 55765 44655533322211 23455567778778899
Q ss_pred EEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecC
Q 018694 108 VVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMT 144 (351)
Q Consensus 108 iIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s 144 (351)
+||.|+|+....+ ... . ++..|+.+|+.+
T Consensus 81 VVIdaT~~~~~~e-~a~----~---~~~aGk~VI~~~ 109 (341)
T PRK04207 81 IVVDATPGGVGAK-NKE----L---YEKAGVKAIFQG 109 (341)
T ss_pred EEEECCCchhhHH-HHH----H---HHHCCCEEEEcC
Confidence 9999995544433 333 2 233456666644
No 231
>PRK05442 malate dehydrogenase; Provisional
Probab=97.65 E-value=0.00021 Score=66.67 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCcc--cchh----HHhc------CCcccCCHHHhhcCCC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLS--KAQP----LLDI------GAHLADSPHSLASQSD 107 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~--~~~~----~~~~------g~~~~~~~~~~~~~~D 107 (351)
.++||+|||+ |.+|..+|..|...|. ++.++|++++ +++. +... ...+..+..+.+.++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 4579999998 9999999999887654 7999999543 2221 1111 2334445557788999
Q ss_pred EEEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 108 VVFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 108 iIi~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+||++...+. .++++.. ++..+..++.++|..+|
T Consensus 83 iVVitaG~~~k~g~tR~dll~~Na~i~~~i~~----~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 83 VALLVGARPRGPGMERKDLLEANGAIFTAQGK----ALNEVAARDVKVLVVGN 131 (326)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHHhCCCCeEEEEeCC
Confidence 9999884321 2445555 56555556777777776
No 232
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.65 E-value=0.00017 Score=66.73 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=62.2
Q ss_pred EEEEccChhhHHHHHHHHHCC--CeEEEEeCCcccchhHHhc---------CCcc--cCCHHHhhcCCCEEEEecCChh-
Q 018694 52 IGWIGTGVMGRSMCAHLLNAG--YTVTVFNRTLSKAQPLLDI---------GAHL--ADSPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~~~~~~---------g~~~--~~~~~~~~~~~DiIi~~vp~~~- 117 (351)
|+|||+|.+|..+|..|+..| .+++++|+++++++..... ...+ .++ .+.+.+||+||+|...+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 689999999999999999888 5899999998876544332 0112 233 456789999999996432
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++.. .+..+. ++.+++..+|
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~----~i~~~~-p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVIT----NLKKYG-PDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHH----HHHHhC-CCeEEEEccC
Confidence 1445555 555544 6777777776
No 233
>PLN02602 lactate dehydrogenase
Probab=97.63 E-value=0.00023 Score=67.07 Aligned_cols=90 Identities=13% Similarity=0.214 Sum_probs=61.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc---------CCccc--CCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI---------GAHLA--DSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~---------g~~~~--~~~~~~~~~~DiIi~~vp~~ 116 (351)
+||+|||+|.+|..+|..|...+. ++.++|+++++++...-. ...+. .+.++ +++||+||++...+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999988776 799999988765332221 12332 34444 78999999997432
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. .++++.. .+..+ .++.++|..+|
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~----~I~~~-~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIP----ELAKY-SPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHH----HHHHH-CCCeEEEEecC
Confidence 1 1334444 44443 46667777776
No 234
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=0.00029 Score=64.70 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=83.9
Q ss_pred CCeEEEEccChhhHHHHHHHHH---CCCeEE-EEeCCcccchhHHhc-C---CcccCCHHHhhcCC--CEEEEecCChhH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN---AGYTVT-VFNRTLSKAQPLLDI-G---AHLADSPHSLASQS--DVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~---~g~~V~-~~dr~~~~~~~~~~~-g---~~~~~~~~~~~~~~--DiIi~~vp~~~~ 118 (351)
.-|+||+|+|.|+.-+++.|.- .+|+|+ +++++.+++..|+.. + .+.+++.++++++. |+|.+.+|.+++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 3689999999999999999864 467755 669999988888776 3 47788999999865 999999999998
Q ss_pred HHHHhhCCCCCcccCCCCCc-EEEecC-CCChhHHHHHHHHHhcCCCcEEec
Q 018694 119 VRHVLLHPSSGALSGLRPGG-IIVDMT-TSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~-~ii~~s-~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+-++. -+ ..++ +++.-- .......+++.+..+.+|+.+.++
T Consensus 86 ~evv~l----~l----~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 86 YEVVML----AL----NKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHHH----HH----HcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 886665 22 2222 333311 133667778888888888888766
No 235
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.61 E-value=0.00039 Score=70.04 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=57.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC--CHHHh-----hcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD--SPHSL-----ASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~--~~~~~-----~~~~DiIi~~vp~~~~~~~ 121 (351)
-+|.|+|+|.+|..+++.|.+.|++|+++|.|+++.+.+++.|... .. +.++. ++++|.++++++++.....
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 5799999999999999999999999999999999999988776432 11 11222 3589999999966655444
Q ss_pred Hhh
Q 018694 122 VLL 124 (351)
Q Consensus 122 v~~ 124 (351)
++.
T Consensus 498 iv~ 500 (558)
T PRK10669 498 IVA 500 (558)
T ss_pred HHH
Confidence 444
No 236
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.61 E-value=0.00034 Score=61.90 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeC----------CcccchhHHhc-C-------CcccCCHHHh-hcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNR----------TLSKAQPLLDI-G-------AHLADSPHSL-ASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr----------~~~~~~~~~~~-g-------~~~~~~~~~~-~~~~Di 108 (351)
.+||+|.|+|++|..+++.|.+.|..|+ +.|. +.+.+....++ | .... +.+++ -.+||+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv 109 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI 109 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence 4799999999999999999999999988 6666 43343333332 2 1111 22332 247999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
++-|.+......+.+. ++ +-++|+...|. |-+ .+-.+.+.++|+.|++-
T Consensus 110 lip~a~~~~i~~~~~~----~l-----~a~~I~egAN~-~~t-~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 110 LIPAALENQITADNAD----RI-----KAKIIVEAANG-PTT-PEADEILHERGVLVVPD 158 (227)
T ss_pred EEecCccCccCHHHHh----hc-----eeeEEEeCCCC-CCC-HHHHHHHHHCCCEEECh
Confidence 9999965555555554 44 35578888887 333 56667778889988854
No 237
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.60 E-value=0.017 Score=54.36 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=115.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-----C--------------------CcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-----G--------------------AHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-----g--------------------~~~~~~~~~~ 102 (351)
|.+|.|+|+|..+--+|..+.+.+. .|-+++|...+.+.+.+. + -....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 5689999999999999999987665 699999987776555332 1 1234566777
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcC--CCcEEec-------cCCC
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALS-GLRPGGIIVDMTTSEPSLASELSAAASSK--NCSAIDA-------PVSG 172 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~--~~~~v~~-------pv~~ 172 (351)
..+-|.+|+|| +.++..+++. ++.. .+..=+.+|-+|-. -+...-+...+... .+.+++- -+..
T Consensus 81 ~g~WdtlILav-taDAY~~VL~----ql~~~~L~~vk~iVLvSPt-fGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 81 EGEWDTLILAV-TADAYLDVLQ----QLPWEVLKRVKSIVLVSPT-FGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cccccEEEEEe-chHHHHHHHH----hcCHHHHhhCCEEEEECcc-cchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 78899999999 8888888998 6654 34444455555542 12222333333332 3444432 1111
Q ss_pred Cc-h-----hhccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHH------------HH-HHHHH------
Q 018694 173 GD-R-----GAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQ------------FA-KLANQ------ 223 (351)
Q Consensus 173 ~~-~-----~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~------------~~-kl~~n------ 223 (351)
.. . .+-+.. ++.|. +....+++..+++.+|. ...+...-.|. .+ +...|
T Consensus 155 ~~~~~~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~ 232 (429)
T PF10100_consen 155 GEQPNRVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEED 232 (429)
T ss_pred CCCcceehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCC
Confidence 10 0 011111 33332 44556778888888886 33332211111 10 00011
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 018694 224 -----------------ITIATTMVGLVEGMVYAHKAGLNVELFLNAIST 256 (351)
Q Consensus 224 -----------------~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~ 256 (351)
.+..-+...+.|++.+..+.|++.=.+.+.+..
T Consensus 233 ~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~d 282 (429)
T PF10100_consen 233 GVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMND 282 (429)
T ss_pred CCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhcc
Confidence 111126677889999999999887555555543
No 238
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.58 E-value=0.00027 Score=65.97 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=62.3
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCccc--chhH----Hhc------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLSK--AQPL----LDI------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~~--~~~~----~~~------g~~~~~~~~~~~~~~Di 108 (351)
++||+|||+ |.+|..++..|...|. +++++|++++. ++.. ... .+.+..+..+.+.++|+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 369999999 9999999999998776 79999995432 2221 110 12334455567889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. ++..+..++.++|..+|
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~----~i~~~~~~~~iiivvsN 129 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGK----ALNDVASRDVKVLVVGN 129 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHhhCCCCeEEEEecC
Confidence 999984321 1445555 55555544667777775
No 239
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.58 E-value=0.00019 Score=62.31 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||+|+|+|.||+.++..|++.|+ +++++|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999999 69999998
No 240
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.58 E-value=0.00044 Score=70.18 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC--CHHHh-----hcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD--SPHSL-----ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~--~~~~~-----~~~~DiIi~~vp~~~~~~ 120 (351)
.++|.|+|+|.+|..+++.|.+.|++++++|.|+++++.+++.|..+ +. +.++. ++++|.++++++++....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 46899999999999999999999999999999999999988876443 11 12222 358999999997777666
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++. .+.. ..++..++...+
T Consensus 480 ~i~~----~~r~-~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIVE----LCQQ-HFPHLHILARAR 499 (601)
T ss_pred HHHH----HHHH-HCCCCeEEEEeC
Confidence 6665 4443 335544554443
No 241
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00045 Score=63.09 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=69.0
Q ss_pred cccccchhhHHHHHHHHhhhccccCCCCCCCCCCCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCc
Q 018694 16 AHSYSLSVSSLVTLLLRRRSMATVASTDPVCPTNTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAH 94 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~ 94 (351)
+++..|+ .++.+.+...... -.-.+|.|||.|. +|.+++..|.+.|..|+++++..
T Consensus 137 ~~~p~T~-~gii~~L~~~~i~----------l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------ 193 (283)
T PRK14192 137 AYGSATP-AGIMRLLKAYNIE----------LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------ 193 (283)
T ss_pred cccCCcH-HHHHHHHHHcCCC----------CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------
Confidence 6788888 7777766542111 1125799999998 99999999999999999998731
Q ss_pred ccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 95 LADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 95 ~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++.+.+.++|+||.|++++.- +. ...+.++.+++|+..
T Consensus 194 --~~L~~~~~~aDIvI~AtG~~~~----v~------~~~lk~gavViDvg~ 232 (283)
T PRK14192 194 --QNLPELVKQADIIVGAVGKPEL----IK------KDWIKQGAVVVDAGF 232 (283)
T ss_pred --hhHHHHhccCCEEEEccCCCCc----CC------HHHcCCCCEEEEEEE
Confidence 2455556899999999965442 21 123568899999874
No 242
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.55 E-value=0.00023 Score=56.15 Aligned_cols=101 Identities=21% Similarity=0.211 Sum_probs=62.2
Q ss_pred ccChhhHHHHHHHHHC----CCeEE-EEeCCcccchh-H--HhcCCcccCCHHHhhc--CCCEEEEecCChhHHHHHhhC
Q 018694 56 GTGVMGRSMCAHLLNA----GYTVT-VFNRTLSKAQP-L--LDIGAHLADSPHSLAS--QSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 56 G~G~mG~~ia~~L~~~----g~~V~-~~dr~~~~~~~-~--~~~g~~~~~~~~~~~~--~~DiIi~~vp~~~~~~~v~~~ 125 (351)
|+|.||+.++..|.+. +++|. +++|+ ..... . ...+.....+.+++++ +.|+||-|+ .+..+.+.+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t-~~~~~~~~~~- 77 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECT-SSEAVAEYYE- 77 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-S-SCHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECC-CchHHHHHHH-
Confidence 8999999999999876 45644 66887 22211 1 1124567789999888 899999998 6666666555
Q ss_pred CCCCcccCCCCCcEEEecCCCChh---HHHHHHHHHhcCCCcE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPS---LASELSAAASSKNCSA 165 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~---~~~~l~~~~~~~~~~~ 165 (351)
. .+..|..||..+.+.-. ..+++.+...+.+..+
T Consensus 78 ---~---~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 78 ---K---ALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp ---H---HHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred ---H---HHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 3 34588889988764222 3344555444445544
No 243
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.00034 Score=63.68 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=59.3
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-.+|.|||.|. +|..++..|.+.|..|+++++.. .++.+.+.++|+||.+++.+.-+..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~------ 217 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK------ 217 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH------
Confidence 36899999998 99999999999999999998642 3567788999999999977653322
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
..+.+++++||++..
T Consensus 218 ----~~vk~gavVIDvGi~ 232 (286)
T PRK14175 218 ----DVVKEGAVIIDVGNT 232 (286)
T ss_pred ----HHcCCCcEEEEcCCC
Confidence 234688999998853
No 244
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.54 E-value=0.005 Score=54.76 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=81.9
Q ss_pred CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe---c
Q 018694 92 GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID---A 168 (351)
Q Consensus 92 g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~---~ 168 (351)
|+++++|..|+++++|++|+.+|.+.....+++ ++.+++.+|.+|.+.+++.+...-.+.+.+.++.+.+.+ +
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iik----ki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPa 203 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIE----KFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPG 203 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHH----HHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCC
Confidence 577888888999999999999999888788888 899999999999999999877666666666655555443 2
Q ss_pred cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCc-eEEc
Q 018694 169 PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 169 pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
.+.+.+ |+ .+..-+ +++..+++.++.+..++ .+.+
T Consensus 204 aVPgt~-----Gq-~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 204 AVPEMK-----GQ-VYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCCCCC-----Cc-eecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 333332 34 232233 88889999999999988 4443
No 245
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.51 E-value=0.00052 Score=63.73 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=46.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCc--ccchhHH----h----cC----CcccCCHHHhhcCCCEEEEe
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTL--SKAQPLL----D----IG----AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~--~~~~~~~----~----~g----~~~~~~~~~~~~~~DiIi~~ 112 (351)
|||+|||+ |.+|..++..|+..|+ +|+++|+++ ++++... + .+ +...++.+ .+.++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 79999998 9999999999999887 599999964 4332211 1 12 12233444 58899999999
Q ss_pred cC
Q 018694 113 VG 114 (351)
Q Consensus 113 vp 114 (351)
+.
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 95
No 246
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00086 Score=59.57 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCC-CeEE-EEeCCcccc-----hhH---HhcCCcccCCHHHhhcCCCEEEEecCCh
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAG-YTVT-VFNRTLSKA-----QPL---LDIGAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g-~~V~-~~dr~~~~~-----~~~---~~~g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
+||||+|.|+ |.||..+.+.+.+.. +++. .++|.+... ..+ -..|+.+.+++.....++|++|=.+ .|
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P 79 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TP 79 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cc
Confidence 3699999999 999999999998765 4533 557765422 111 1225666777777788999999999 66
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEEeccCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
..+.+.+. -.. ..+..+|.-+|+-. ...+.+.+... .+.++-+|++.
T Consensus 80 ~~~~~~l~----~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~--~v~vv~a~NfS 127 (266)
T COG0289 80 EATLENLE----FAL---EHGKPLVIGTTGFTEEQLEKLREAAE--KVPVVIAPNFS 127 (266)
T ss_pred hhhHHHHH----HHH---HcCCCeEEECCCCCHHHHHHHHHHHh--hCCEEEeccch
Confidence 76666665 222 23344444555544 33344444433 36777777773
No 247
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.50 E-value=0.0062 Score=54.30 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=81.8
Q ss_pred CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec---
Q 018694 92 GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA--- 168 (351)
Q Consensus 92 g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~--- 168 (351)
|+++++|..|+++++|++|+.+|.+.....+++ ++.+++.+|.+|.+.+++.+...-.+.+.+.++.+.+.+.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iik----kii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPa 201 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIK----KFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPG 201 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHH----HHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCC
Confidence 577888888999999999999999887788888 8999999999999999998776666666666555544432
Q ss_pred cCCCCchhhccCceeEEecC--CHHHHHHHHHHHHhhCc-eEEc
Q 018694 169 PVSGGDRGAKTGTLAIFAGG--DESVVQKLNPLFALMGK-VNYM 209 (351)
Q Consensus 169 pv~~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~~~g~-~~~~ 209 (351)
.+.+.+ ++ .++.-+ +++..+++.++.+..++ ++.+
T Consensus 202 aVPgt~-----~q-~Yi~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 202 CVPEMK-----GQ-VYIAEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCCC-----Cc-eEeecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 333332 23 333344 88899999999999988 4443
No 248
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.50 E-value=0.00036 Score=64.59 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=60.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccchh----HHhc--CCccc---C--CHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQP----LLDI--GAHLA---D--SPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~----~~~~--g~~~~---~--~~~~~~~~~DiIi~~vp~ 115 (351)
|||+|||+ |++|..+|..|...|. ++.++|++ +++. +..- ...+. . ++.+.++++|+||++...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 69999999 9999999999998885 89999987 3221 2211 11222 2 234668899999999854
Q ss_pred hh---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+. .++++.. .+..+ .++.++|..+|-
T Consensus 79 ~~k~g~tR~dll~~N~~i~~~i~~----~i~~~-~p~a~vivvtNP 119 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLAT----AVAKA-CPKALILIISNP 119 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEccCc
Confidence 31 2344444 45444 567788888873
No 249
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.49 E-value=0.0008 Score=61.05 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---cCCCCchhhhhhhhhcccCCCCCccchhhHHHH--
Q 018694 215 GQFAKLANQITIATTMVGLVEGMVYAHK-AGLNVELFLNAIS---TGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKD-- 288 (351)
Q Consensus 215 a~~~kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd-- 288 (351)
++.+||++|.+..+.+++++|++.+.+. .|++.+++.++.. .+...|+.++....-+...+...++-++.+..-
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 5789999999999999999999998884 7888888777655 556778888888776655553333444443221
Q ss_pred ----HHHHHHHHHhcCCCCcHHHHHH
Q 018694 289 ----LGICLKECQNMGLALPGLALAQ 310 (351)
Q Consensus 289 ----~~~~~~~a~~~gv~~p~~~~~~ 310 (351)
-.+..+.|-+.|+|+|++..+.
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 2488999999999999776554
No 250
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.49 E-value=0.00048 Score=64.99 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=57.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHhc-----C---Cccc-CCHHHhhcCCCEEEEecCChh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLDI-----G---AHLA-DSPHSLASQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~~-----g---~~~~-~~~~~~~~~~DiIi~~vp~~~ 117 (351)
|||+|||+ |.+|..+.+.|.+. ++++. ++++....-+.+.+. + .... .+.+++..++|++|+|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 58999998 99999999999875 45777 545443222223211 1 1111 14455656899999999544
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
...+... .+. ..|..|||+|+.
T Consensus 80 ~s~~~~~----~~~---~~G~~VIDlS~~ 101 (346)
T TIGR01850 80 VSAELAP----ELL---AAGVKVIDLSAD 101 (346)
T ss_pred HHHHHHH----HHH---hCCCEEEeCChh
Confidence 4454554 332 367899999964
No 251
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.48 E-value=0.00045 Score=58.61 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=29.7
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
||+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 69999999999999999999999 599999875
No 252
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.45 E-value=0.00045 Score=65.11 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHC----------CCeEE-EEeCCcc----------cchhHHhc-C-Cc------ccCCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA----------GYTVT-VFNRTLS----------KAQPLLDI-G-AH------LADSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~----------g~~V~-~~dr~~~----------~~~~~~~~-g-~~------~~~~~ 99 (351)
++||+|+|+|.||..+++.|.+. +.+|+ ++|++.. .+..+.+. + +. ...+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 47999999999999999998765 34544 5575321 22222222 2 11 12377
Q ss_pred HHhhc--CCCEEEEecCChhHH-HHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEE
Q 018694 100 HSLAS--QSDVVFSIVGYPSDV-RHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAI 166 (351)
Q Consensus 100 ~~~~~--~~DiIi~~vp~~~~~-~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v 166 (351)
++++. +.|+|+.|+|+..+. +.... -+..++..|..||..++.. .....++.+...+.++.+.
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~----~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALS----HCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHH----HHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 77773 689999999754331 11111 1123345777777654421 1234456666555565443
No 253
>PRK15076 alpha-galactosidase; Provisional
Probab=97.45 E-value=0.00015 Score=70.41 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=49.1
Q ss_pred CCeEEEEccChhhHHHHH--HHH----HCCCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEE
Q 018694 49 NTRIGWIGTGVMGRSMCA--HLL----NAGYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~--~L~----~~g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi 110 (351)
|+||+|||+|.||...+. .++ -.+.+|+++|+++++++.... .+ +..+++..+++.++|+||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 579999999999966554 443 245699999999887653211 12 344667778899999999
Q ss_pred EecCCh
Q 018694 111 SIVGYP 116 (351)
Q Consensus 111 ~~vp~~ 116 (351)
+++..+
T Consensus 81 ~ti~vg 86 (431)
T PRK15076 81 NAIQVG 86 (431)
T ss_pred EeeeeC
Confidence 999543
No 254
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.44 E-value=0.00061 Score=65.86 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=65.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC-------CC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA-------GY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~-------g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~Di 108 (351)
+-||+|||+ |.+|..+|..|+.. |. +++++|++.++++...-. .+.+..+..+.++++|+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 579999999 99999999999987 55 799999998876443211 23333455577889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. ++..+..++.++|..+|
T Consensus 180 VVitAG~prkpG~tR~dLl~~N~~I~k~i~~----~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGK----ALNEVASRNVKVIVVGN 227 (444)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhcCCCeEEEEcCC
Confidence 999885431 2444554 55554456777777776
No 255
>PRK05086 malate dehydrogenase; Provisional
Probab=97.43 E-value=0.00071 Score=62.92 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=59.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH---CCCeEEEEeCCcccc---hhHHhcC--Ccc----cCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN---AGYTVTVFNRTLSKA---QPLLDIG--AHL----ADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~---~g~~V~~~dr~~~~~---~~~~~~g--~~~----~~~~~~~~~~~DiIi~~vp~~ 116 (351)
|||+|||+ |.+|.+++..|.. .+++++++|+++... -.+...+ ..+ .+++.+.++++|+||+|...+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 79999999 9999999988854 345899999985431 1222211 111 235456778999999999542
Q ss_pred h---------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 S---------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
. .+++++. .+..+ .++.+++..+|-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~----~i~~~-~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVE----KVAKT-CPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEccCc
Confidence 1 2344444 44444 466777777763
No 256
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.42 E-value=0.001 Score=55.34 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=49.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-Cccc-CC-HHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-AHLA-DS-PHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-~~~~-~~-~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.||.|||.|.+|...++.|.+.|++|++++ ++..+.+.+.+ +... .. .++.+.++|+||.|+ ....+...+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-~d~e~N~~i 87 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-NQHAVNMMV 87 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECC-CCHHHHHHH
Confidence 689999999999999999999999999995 44444554432 1111 11 122357899999999 555544433
No 257
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.39 E-value=0.00069 Score=63.04 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=48.3
Q ss_pred CCCCCCCeEEEEcc-ChhhHHHHHHHHHCC--CeEEEEeCCcccch--hHHhc--CCcc--cCC---HHHhhcCCCEEEE
Q 018694 44 PVCPTNTRIGWIGT-GVMGRSMCAHLLNAG--YTVTVFNRTLSKAQ--PLLDI--GAHL--ADS---PHSLASQSDVVFS 111 (351)
Q Consensus 44 ~~~~~~~kI~iIG~-G~mG~~ia~~L~~~g--~~V~~~dr~~~~~~--~~~~~--g~~~--~~~---~~~~~~~~DiIi~ 111 (351)
|.-..|.||+|||+ |.+|..++..|+..+ .++.++|++....+ .+.+. ...+ .++ ..+.++++|+||+
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVi 82 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLI 82 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEE
Confidence 33346789999999 999999999998555 48999999422211 11111 1122 222 1567889999999
Q ss_pred ecCC
Q 018694 112 IVGY 115 (351)
Q Consensus 112 ~vp~ 115 (351)
+...
T Consensus 83 taG~ 86 (321)
T PTZ00325 83 CAGV 86 (321)
T ss_pred CCCC
Confidence 9854
No 258
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=97.38 E-value=0.0018 Score=51.60 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHH--HHHHHh----cCCCCchhhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCC
Q 018694 229 TMVGLVEGMVYAHKAGLNVEL--FLNAIS----TGAAGSKSLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLA 302 (351)
Q Consensus 229 ~~~~~~Ea~~la~~~Gi~~~~--~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~ 302 (351)
...++.|+..++++.|++.+. +.+.+. ..... ..+ ....+.++... .++.+. +++++.|+++|++
T Consensus 40 ~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~--~~S-M~~D~~~gr~t---Eid~i~---G~vv~~a~~~gv~ 110 (125)
T PF08546_consen 40 IRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPDN--RSS-MLQDIEAGRPT---EIDYIN---GYVVRLAKKHGVP 110 (125)
T ss_dssp HHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTTT----H-HHHHHHTTB-----SHHHTH---HHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCc--ccc-HHHHHHHcccc---cHHHHH---HHHHHHHHHHCCC
Confidence 567788999999999975432 333322 21110 011 11112222221 343333 8999999999999
Q ss_pred CcHHHHHHHHHHHH
Q 018694 303 LPGLALAQQLYLSL 316 (351)
Q Consensus 303 ~p~~~~~~~l~~~~ 316 (351)
+|.++.++++++..
T Consensus 111 ~P~~~~i~~lvk~~ 124 (125)
T PF08546_consen 111 TPVNETIYALVKAI 124 (125)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999998753
No 259
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.37 E-value=0.00077 Score=63.30 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=66.7
Q ss_pred CCeEEEEccChhhHHHHHHHHH--------CCC--eEE-EEeCCccc-----c--hhHH---hc-C-Cc-c-------cC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN--------AGY--TVT-VFNRTLSK-----A--QPLL---DI-G-AH-L-------AD 97 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~--------~g~--~V~-~~dr~~~~-----~--~~~~---~~-g-~~-~-------~~ 97 (351)
++||+|+|+|++|..+++.|.+ .|. +|+ +.|++... + ..+. +. + +. . ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4799999999999999999876 464 333 44654222 1 1111 11 1 00 0 11
Q ss_pred CHHHhh--cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEEec
Q 018694 98 SPHSLA--SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 98 ~~~~~~--~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v~~ 168 (351)
+.++++ .++|+||-|+ .+....+... . .+..+..+|..+++.. ...+++.+.....++.+.-.
T Consensus 82 ~~~ell~~~~~DVvVd~t-~~~~a~~~~~----~---al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~e 147 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVT-NDKNAHEWHL----E---ALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFE 147 (336)
T ss_pred CHHHHHhcCCCCEEEECC-CcHHHHHHHH----H---HHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEe
Confidence 566766 4789999999 5555555554 3 3457888887776411 23445555555566666543
No 260
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.36 E-value=0.00082 Score=61.81 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=46.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccC-CHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLAD-SPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~-~~~~~~~~~DiIi~~vp 114 (351)
+||+|||+|.+|.++|..|...+. ++.++|+++++.+...-. ...+.. ..-+.++++|+|+++..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence 589999999999999999976654 899999996654332211 122333 12455789999999983
No 261
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.35 E-value=0.0024 Score=52.24 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=67.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChhHH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPSDV 119 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~~~ 119 (351)
||.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+ |-.......+.+. ++++-+...+....-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999998 699999874332222222 2111111122111 234444444221111
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.... ..+.+-++||++... ......+.+.+...++.|+++...+
T Consensus 81 ~~~~--------~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DNLD--------DFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhHH--------HHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 123466788887766 5555667777777888888876654
No 262
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.33 E-value=0.00083 Score=62.70 Aligned_cols=91 Identities=11% Similarity=0.176 Sum_probs=61.2
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCc--ccchhHH----hc------CCcccCCHHHhhcCCCEEE
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTL--SKAQPLL----DI------GAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~--~~~~~~~----~~------g~~~~~~~~~~~~~~DiIi 110 (351)
||+|||+ |.+|..++..|...|. ++.++|+++ ++.+... +. +..+..+..+.++++|+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999997654 599999987 5432221 10 1233355667889999999
Q ss_pred EecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 111 SIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 111 ~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
++...+. .++++.. ++..+..++.++|..+|
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~----~i~~~~~~~~iiivvsN 127 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGE----ALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHH----HHHHhCCCCeEEEEeCC
Confidence 9874321 1445555 55555446666666665
No 263
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.33 E-value=0.0012 Score=67.26 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc-C--CHHHh-----hcCCCEEEEecCChhHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA-D--SPHSL-----ASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~-~--~~~~~-----~~~~DiIi~~vp~~~~~~ 120 (351)
..+|-|+|+|.+|..+++.|.+.|+++++.|.|+++++.+++.|..+. . +..+. ++++|.+++|+++++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 368999999999999999999999999999999999999988775431 1 11222 357999999996666665
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.++. .+... .++..++-..+. ..+. ..+.+.|+.++.-
T Consensus 480 ~i~~----~ar~~-~p~~~iiaRa~d-~~~~----~~L~~~Gad~v~~ 517 (621)
T PRK03562 480 QLVE----LVKEH-FPHLQIIARARD-VDHY----IRLRQAGVEKPER 517 (621)
T ss_pred HHHH----HHHHh-CCCCeEEEEECC-HHHH----HHHHHCCCCEEeh
Confidence 5555 34333 344344433332 3332 2333456666543
No 264
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.29 E-value=0.00057 Score=63.30 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=47.4
Q ss_pred eEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc-----------CCcccCCHHHhhcCCCEEEEecC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI-----------GAHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~~~~~~~DiIi~~vp 114 (351)
||+|||+|.+|..+|..|...+. +++++|+++++++...-. ...+....-+.++++|+||++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999988776 799999987764332111 11222233456789999999884
No 265
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.29 E-value=0.00035 Score=58.88 Aligned_cols=94 Identities=17% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC--------------------------CHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD--------------------------SPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~--------------------------~~~~~ 102 (351)
..||.|+|.|..|..-+..+...|++|+++|.++++.+.+...+..... .+.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 3799999999999999999999999999999998877766555322111 23355
Q ss_pred hcCCCEEEEecC-ChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 103 ASQSDVVFSIVG-YPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 103 ~~~~DiIi~~vp-~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+..+|+||.++- .......++.. +....+.++.+|+|++.
T Consensus 100 i~~~d~vI~~~~~~~~~~P~lvt~---~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRAPRLVTE---EMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHH-SEEEEHHHBTTSS---SBEH---HHHHTSSTTEEEEETTG
T ss_pred HhhCcEEeeecccCCCCCCEEEEh---HHhhccCCCceEEEEEe
Confidence 567999997651 12222222221 22334569999999985
No 266
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.27 E-value=0.00084 Score=58.40 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 579999999999999999999998 899999874
No 267
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.27 E-value=0.00044 Score=60.69 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=46.7
Q ss_pred CeEEEEccChhhHHHHHHH--HHCCCeEE-EEeCCcccchhHHhcC--CcccCCHHHhhc--CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHL--LNAGYTVT-VFNRTLSKAQPLLDIG--AHLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L--~~~g~~V~-~~dr~~~~~~~~~~~g--~~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
.+|+|||+|.+|..++..+ ...|++++ ++|+++++..... .| +...+++++++. ++|.+++|+|....
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 6899999999999999864 34677766 6688876654322 12 222345666664 49999999965443
No 268
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.26 E-value=0.00086 Score=65.90 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC----------------C----------HHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD----------------S----------PHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~----------------~----------~~~ 101 (351)
..|+.|+|+|.+|...+..+...|..|+++|+++++.+.+...|... .- + ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999998877766655432 00 0 234
Q ss_pred hhcCCCEEEEec-----CChh-HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 102 LASQSDVVFSIV-----GYPS-DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 102 ~~~~~DiIi~~v-----p~~~-~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+.++|+||.|+ |.|. -.++.+ ..++++.+|||++..
T Consensus 244 ~~~~~DIVI~TalipG~~aP~Lit~emv--------~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAPKLITEEMV--------DSMKAGSVIVDLAAE 286 (511)
T ss_pred HhCCCCEEEECcccCCCCCCeeehHHHH--------hhCCCCCEEEEeeeC
Confidence 457899999988 3331 233333 346789999999864
No 269
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.0011 Score=60.16 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=58.9
Q ss_pred CeEEEEccChh-hHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||.|.+ |..++..|.+.|..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~------- 217 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTA------- 217 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCH-------
Confidence 68999999998 999999999999999988642 24677888999999999976553332
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++.++||++..
T Consensus 218 ---~~ik~gavVIDVGin 232 (285)
T PRK14189 218 ---DMVKPGATVIDVGMN 232 (285)
T ss_pred ---HHcCCCCEEEEcccc
Confidence 346789999998843
No 270
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.24 E-value=0.0011 Score=58.17 Aligned_cols=32 Identities=19% Similarity=0.483 Sum_probs=29.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999999 59999987
No 271
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.24 E-value=0.0011 Score=57.75 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=50.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcC-CcccC--CHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIG-AHLAD--SPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g-~~~~~--~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+||.|||.|.+|...++.|.+.|++|++++++.. .+..+...+ +.... -.++.+.++|+||.|+ ....+...+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT-~d~elN~~i~ 88 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT-NDPRVNEQVK 88 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC-CCHHHHHHHH
Confidence 6899999999999999999999999999987642 223333332 22111 1123467899999999 5555544444
No 272
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.23 E-value=0.00096 Score=62.70 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCe---EEEEeCCcccchhHHhcC--CcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYT---VTVFNRTLSKAQPLLDIG--AHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~---V~~~dr~~~~~~~~~~~g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
|+||+|+|+ |..|..+.+.|.+.+|+ +....+....-+.+.-.+ +.+.+...+...++|+||+|+ +.....+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~-g~g~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSA-GGSVSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECC-ChHHHHHH
Confidence 479999976 99999999999998885 355554433323322112 222221222346899999999 44455555
Q ss_pred hhCCCCCcccCCCCCcEEEecCCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.. .+ +..|..|||++..
T Consensus 80 ~~----~~---~~~G~~VIDlS~~ 96 (334)
T PRK14874 80 AP----KA---AAAGAVVIDNSSA 96 (334)
T ss_pred HH----HH---HhCCCEEEECCch
Confidence 55 33 2357799998853
No 273
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.22 E-value=0.017 Score=59.55 Aligned_cols=113 Identities=11% Similarity=0.176 Sum_probs=84.0
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec-cCCCCchhh--------cc
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA-PVSGGDRGA--------KT 179 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~-pv~~~~~~~--------~~ 179 (351)
||+|+ +...+.+++. ++.+++.++++|.|+++......+.+.+.++.....|+.+ |+.|.+..- .+
T Consensus 1 vila~-Pv~~~~~~~~----~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAA-PVAQTGPLLA----RIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV 75 (673)
T ss_pred CEEEc-CHHHHHHHHH----HHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence 68999 8888888999 8989999999999999998777777766655333568887 888876432 35
Q ss_pred CceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHH
Q 018694 180 GTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITI 226 (351)
Q Consensus 180 g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~ 226 (351)
+..++++.. +++..+.++++++.+|. ++.+.....-..+-++..+..
T Consensus 76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH 126 (673)
T PRK11861 76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPH 126 (673)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHH
Confidence 666666643 67788999999999998 777776555555544444433
No 274
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.21 E-value=0.0011 Score=61.37 Aligned_cols=91 Identities=19% Similarity=0.329 Sum_probs=60.2
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccch--hHHhc--CCccc----C-CHHHhhcCCCEEEEecCChh-
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQ--PLLDI--GAHLA----D-SPHSLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~--~~~~~--g~~~~----~-~~~~~~~~~DiIi~~vp~~~- 117 (351)
||+|||+ |++|..+|..|...+. ++.++|+++...+ .+... ...+. + ++.+.++++|+||++...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 7999999 9999999999988876 8999999862211 11111 11222 1 23567899999999985431
Q ss_pred --------------HHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 118 --------------DVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 118 --------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++.. .+..+ .++.++|..+|-
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~----~i~~~-~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVA----AVAES-CPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHH----HHHHh-CCCeEEEEecCc
Confidence 2344444 44444 467778877773
No 275
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.18 E-value=0.00079 Score=66.33 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=66.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCccc--CC---------------H----------HH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLA--DS---------------P----------HS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~--~~---------------~----------~~ 101 (351)
..||.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|.... +. . .+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 468999999999999999999999999999999999888877776521 11 0 11
Q ss_pred hhcCCCEEEEecCChh-----H-HHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 102 LASQSDVVFSIVGYPS-----D-VRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~-----~-~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+..+|+||.|+..+. . +++.+. .++++..|++++.
T Consensus 245 ~~~gaDVVIetag~pg~~aP~lit~~~v~--------~mkpGgvIVdvg~ 286 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLITAEMVA--------SMKPGSVIVDLAA 286 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchHHHHHHH--------hcCCCCEEEEEcc
Confidence 1246999999995322 2 244444 4568889999886
No 276
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.18 E-value=0.0011 Score=62.40 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=30.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|+ +++++|++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 689999999999999999999998 799999874
No 277
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.17 E-value=0.0012 Score=61.94 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeE---EEEeCCcccchh---HHhcCCcccC-CHHHhhcCCCEEEEecCChhHH
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTV---TVFNRTLSKAQP---LLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V---~~~dr~~~~~~~---~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
.|+||+|+|+ |.+|..+.+.|.+.+|++ ..+ .+.+...+ +....+.+.. +..+ ++++|++|+|+| ....
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p-~~~s 79 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAG-AAVS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCC-HHHH
Confidence 4589999987 999999999999877743 333 22222211 1111122221 2223 478999999995 4445
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
.+... .+. ..|..+||+|.-
T Consensus 80 ~~~v~----~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 80 RSFAE----KAR---AAGCSVIDLSGA 99 (336)
T ss_pred HHHHH----HHH---HCCCeEEECchh
Confidence 55555 332 357889999853
No 278
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.17 E-value=0.0041 Score=60.35 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=68.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChh---HHHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPS---DVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~---~~~~v~~~~ 126 (351)
.||.|||.|.+|.++|..|.+.|++|+++|++++.........-....+.+....++|+||.+.+.+. .+.++....
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g 83 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASH 83 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCC
Confidence 68999999999999999999999999999988664432110000112233444467898888774332 222222210
Q ss_pred C-----CCc-ccC--C-CCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 127 S-----SGA-LSG--L-RPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 127 ~-----~~i-~~~--l-~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
. ..+ ... . ....+-|.-|+|...+..-+...+...+.
T Consensus 84 ~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 84 IPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred CcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 0 000 000 1 22347777788877777777777765443
No 279
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.17 E-value=0.0017 Score=59.00 Aligned_cols=72 Identities=29% Similarity=0.445 Sum_probs=59.7
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-|. +|..++..|.+.|..|+++++. +.++.+.+.++|+||.+++++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~------- 218 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG------- 218 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH-------
Confidence 6899999999 9999999999999999999764 23677888999999999977664432
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++++++||++.
T Consensus 219 ---~~vk~gavVIDvGi 232 (285)
T PRK10792 219 ---EWIKPGAIVIDVGI 232 (285)
T ss_pred ---HHcCCCcEEEEccc
Confidence 34568999999884
No 280
>PLN00106 malate dehydrogenase
Probab=97.16 E-value=0.0016 Score=60.61 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=46.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC--eEEEEeCCcccc--hhHHhc----CCc---ccCCHHHhhcCCCEEEEecCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY--TVTVFNRTLSKA--QPLLDI----GAH---LADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~--~V~~~dr~~~~~--~~~~~~----g~~---~~~~~~~~~~~~DiIi~~vp~ 115 (351)
.||+|||+ |++|..++..|...+. ++.++|+++... ..+... .+. -.++..+.+.++|+||++...
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 69999999 9999999999997665 899999976221 111111 111 123346778999999999843
No 281
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.16 E-value=0.0018 Score=61.68 Aligned_cols=93 Identities=9% Similarity=0.071 Sum_probs=62.3
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC-----eEE--EE--eCCcccchhHHhc----------CCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY-----TVT--VF--NRTLSKAQPLLDI----------GAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~-----~V~--~~--dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~Di 108 (351)
+-||+|||+ |.+|..+|..|...|. +|. ++ |++.++++...-. .+.+.++..+.++++|+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 479999999 9999999999987765 234 44 7777765432211 23334455577889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. .+..+..++.++|..+|
T Consensus 124 VVitAG~prkpg~tR~dll~~N~~I~k~i~~----~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 124 ALLIGAKPRGPGMERADLLDINGQIFADQGK----ALNAVASKNCKVLVVGN 171 (387)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhCCCCeEEEEcCC
Confidence 999874431 1444554 55555557777777776
No 282
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0018 Score=59.77 Aligned_cols=91 Identities=18% Similarity=0.337 Sum_probs=56.4
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc-----C---Cccc-CCHHHh-hcCCCEEEEecCC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI-----G---AHLA-DSPHSL-ASQSDVVFSIVGY 115 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~-----g---~~~~-~~~~~~-~~~~DiIi~~vp~ 115 (351)
+|+||+|+|+ |.-|..+.+.|..... ++..+..+..+-+.+.+. | +... -+.+++ .++||+||+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 4789999976 9999999999987543 666665443222233322 1 1111 123333 4469999999966
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
....+ ... .+. .++..|||+|+-
T Consensus 81 g~s~~-~v~----~l~---~~g~~VIDLSad 103 (349)
T COG0002 81 GVSAE-LVP----ELL---EAGCKVIDLSAD 103 (349)
T ss_pred hhHHH-HHH----HHH---hCCCeEEECCcc
Confidence 55443 444 332 356679999984
No 283
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.14 E-value=0.0025 Score=60.84 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=60.8
Q ss_pred CCCCeEEEEcc-ChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhcC-------CcccCCHH-HhhcCCCEEEEecCCh
Q 018694 47 PTNTRIGWIGT-GVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDIG-------AHLADSPH-SLASQSDVVFSIVGYP 116 (351)
Q Consensus 47 ~~~~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~-~~~~~~DiIi~~vp~~ 116 (351)
.+++||+|+|+ |..|..+.+.|.+. .++|+.+.++...-+.+.... .....+.+ +.++++|+||+|+ +.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al-p~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL-PH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC-CH
Confidence 45679999987 99999999999887 568888876544333322211 11111122 2247899999999 55
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
....++.. .+ ..+..|||+++.
T Consensus 115 ~~s~~i~~----~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 115 GTTQEIIK----AL----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHH----HH----hCCCEEEEcCch
Confidence 56666665 43 357889999964
No 284
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.14 E-value=0.0025 Score=59.56 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=61.1
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCC-------CeEEEEeCCccc--chhH----Hh------cCCcccCCHHHhhcCCCE
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAG-------YTVTVFNRTLSK--AQPL----LD------IGAHLADSPHSLASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g-------~~V~~~dr~~~~--~~~~----~~------~g~~~~~~~~~~~~~~Di 108 (351)
+.||+|+|+ |.+|..++..|...+ .+|.++|+++.. ++.. .+ ..+....+..+.++++|+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 368999999 999999999998744 589999996532 2211 10 012234565677889999
Q ss_pred EEEecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 109 VFSIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 109 Ii~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
||++...+. .++++.. .+..+..++.++|..+|
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~----~i~~~~~~~~iiivvsN 129 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGE----ALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHH----HHHHhCCCCeEEEEecC
Confidence 999884321 1234444 55555456777777776
No 285
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.14 E-value=0.0012 Score=56.07 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=48.7
Q ss_pred EEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecCC
Q 018694 52 IGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVGY 115 (351)
Q Consensus 52 I~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp~ 115 (351)
|.|+|+ |.+|..+++.|.+.|++|++..|++++.+. ..++.. .++..+++.++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 688986 999999999999999999999999987765 333221 12335667799999999964
No 286
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.14 E-value=0.0019 Score=53.70 Aligned_cols=74 Identities=24% Similarity=0.516 Sum_probs=52.1
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.+++.|||-+. +|..++..|.+.|..|++++... .++++.++++|+||.+++.+..++.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~------ 95 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKA------ 95 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-G------
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecccccccc------
Confidence 36899999875 99999999999999999988652 4667778899999999977654332
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
.+++++.++||+...
T Consensus 96 ----~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 96 ----DWIKPGAVVIDVGIN 110 (160)
T ss_dssp ----GGS-TTEEEEE--CE
T ss_pred ----ccccCCcEEEecCCc
Confidence 245799999998854
No 287
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.08 E-value=0.0032 Score=61.71 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=52.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc--CCcc-cC---CHH----HhhcCCCEEEEecCCh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI--GAHL-AD---SPH----SLASQSDVVFSIVGYP 116 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~--g~~~-~~---~~~----~~~~~~DiIi~~vp~~ 116 (351)
+++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +... .. +.+ ..+.++|.||++++..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 5789999999999999999999999999999999988887765 3322 11 222 1235789999888543
No 288
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.08 E-value=0.0016 Score=60.13 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=60.0
Q ss_pred EEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCChh----
Q 018694 54 WIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYPS---- 117 (351)
Q Consensus 54 iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~~---- 117 (351)
|||+|.+|..+|..|...+. ++.++|++.++++..... ...+..+..+.++++|+||++...+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999988776 799999987765443221 12333344567889999999885421
Q ss_pred -----------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 -----------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 -----------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++.. .+..+ .++.+++..+|
T Consensus 81 ~R~dll~~N~~i~~~~~~----~i~~~-~p~~~vivvsN 114 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVP----EVVKS-GFDGIFLVATN 114 (299)
T ss_pred CHHHHHHHHHHHHHHHHH----HHHHh-CCCeEEEEeCC
Confidence 1444555 55554 46777777776
No 289
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.07 E-value=0.0013 Score=49.98 Aligned_cols=73 Identities=22% Similarity=0.238 Sum_probs=53.9
Q ss_pred CeEEEEccChhhHHHHHHH-HHCCCe-EEEEeCCcccchhHHhcCCcccCCHHHhhcC--CCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHL-LNAGYT-VTVFNRTLSKAQPLLDIGAHLADSPHSLASQ--SDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L-~~~g~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~~ 124 (351)
.|+.|+|+|++|.+++..+ ...|+. +.++|.++++..... .|+.++.+.+++.+. .|+-++|+ ++....+++.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~V-P~~~a~~~~~ 80 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITV-PAEAAQEVAD 80 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEc-CHHHHHHHHH
Confidence 5899999999999987544 346776 557799988765322 267788788877665 99999999 6666666666
No 290
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.05 E-value=0.0015 Score=61.01 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHC------C--CeEE-EEeCCcccch-------hH---HhcC-C--cccC--CHHHhh-c
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNA------G--YTVT-VFNRTLSKAQ-------PL---LDIG-A--HLAD--SPHSLA-S 104 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~------g--~~V~-~~dr~~~~~~-------~~---~~~g-~--~~~~--~~~~~~-~ 104 (351)
|||+|||+|++|..+++.|.+. | .+|+ ++|++..... .+ .++| + .... +.+++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 5899999999999999999873 3 3433 5566542221 11 1111 1 0112 445543 4
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChh-HHHHHHHHHhcCCCcEE
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPS-LASELSAAASSKNCSAI 166 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~-~~~~l~~~~~~~~~~~v 166 (351)
++|++|-|+|....-..... -+..++..|..||..+.+... ...++.+...+.++.+.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~----~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKN----LYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CCCEEEECCCCCCcCchHHH----HHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 68999999953321111111 223445688888877764221 23455555555565543
No 291
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.03 E-value=0.01 Score=58.28 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=71.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-----chhHHhcCCcccC--CHHHhhcCCCEEEEecCCh---hHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-----AQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYP---SDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-----~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~---~~~ 119 (351)
+||+|+|.|.-|.++|+.|.+.|++|+++|+++.. .+.+...|+.... ...+.+.++|+||..-.-+ ..+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~ 94 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL 94 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence 68999999999999999999999999999987531 1345555765532 2234457899888763111 223
Q ss_pred HHHhhCCCCCcc-------cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 120 RHVLLHPSSGAL-------SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 120 ~~v~~~~~~~i~-------~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
..+..... .+. .......+-|.-|+|...+..-+...+...+...
T Consensus 95 ~~a~~~~i-~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 95 VKAKEEGA-YITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred HHHHHcCC-cEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 32222110 111 1112245677777787777776777776555433
No 292
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.01 E-value=0.0027 Score=57.72 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=58.6
Q ss_pred CeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-+. +|..++..|.+.|..|++++.. +.++.+...++|+||.++.++..+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~~------- 223 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIKA------- 223 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccCH-------
Confidence 6899999999 9999999999999999999843 23567778899999999977654322
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
..++++.++||++.
T Consensus 224 ---~~vk~gavVIDvGi 237 (287)
T PRK14176 224 ---DMVKEGAVIFDVGI 237 (287)
T ss_pred ---HHcCCCcEEEEecc
Confidence 24568999999874
No 293
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.01 E-value=0.0049 Score=57.49 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=42.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.||.|||+|.||...+++|.+.|. +|++++|+.... .+.+. . ....+...++|+||.|+
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~--~--~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTV--V--REELSFQDPYDVIFFGS 234 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhh--h--hhhhhcccCCCEEEEcC
Confidence 689999999999999999999996 699999997531 11110 0 01113346899999973
No 294
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.99 E-value=0.0025 Score=59.98 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=55.1
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCe---EEEE--eCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYT---VTVF--NRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~---V~~~--dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
.+||+|+|+ |..|..+.+.|.+.+|+ +..+ .|+..+.-.+....+.+.....+.+.++|+||+|+|. ....+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~-~~s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGG-SISKKF 85 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCc-HHHHHH
Confidence 479999976 99999999999988883 3333 3333222111111122222222445789999999944 455555
Q ss_pred hhCCCCCcccCCCCCcEEEecCC
Q 018694 123 LLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 123 ~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.. .+. ..+..|||+|.
T Consensus 86 ~~----~~~---~~g~~VIDlS~ 101 (344)
T PLN02383 86 GP----IAV---DKGAVVVDNSS 101 (344)
T ss_pred HH----HHH---hCCCEEEECCc
Confidence 54 332 36889999984
No 295
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.98 E-value=0.0019 Score=60.33 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=61.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC-C-CeEEEEeCCcccchhHHhc-CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA-G-YTVTVFNRTLSKAQPLLDI-GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~-g-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.++|.|+|+ |.||+.+++.|... | .++++++|+.+++..+..+ +.....+.++.+.++|+|+.++.-+..+ ++.
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~--~I~ 232 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV--EID 232 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--cCC
Confidence 368999998 89999999999854 4 4899999998877776554 1112235677888999999888332211 011
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. ..+.++.+++|++-
T Consensus 233 -----~-~~l~~~~~viDiAv 247 (340)
T PRK14982 233 -----P-ETLKKPCLMIDGGY 247 (340)
T ss_pred -----H-HHhCCCeEEEEecC
Confidence 0 12357778888773
No 296
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.98 E-value=0.0016 Score=60.64 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=49.5
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEecC
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~vp 114 (351)
|||.|.| +|.+|+.++..|.+.||+|.+.+|++++...+...++.. ..+..++++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 6899998 599999999999999999999999876654444334332 1234566788999998763
No 297
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.98 E-value=0.0065 Score=59.94 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhH-HhcCCcccC--CHHHhhcCCCEEEEec--CC-hhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL-LDIGAHLAD--SPHSLASQSDVVFSIV--GY-PSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~-~~~g~~~~~--~~~~~~~~~DiIi~~v--p~-~~~~~~v 122 (351)
++||.|+|+|..|.+++..|.+.|++|+++|++......+ .+.|+.... ...+.+.++|+||..- |+ ...+...
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a 94 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDA 94 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHH
Confidence 4689999999999999999999999999999876544333 333665532 2334456789887653 22 1223222
Q ss_pred hhCCCCCccc------------CC--CCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 123 LLHPSSGALS------------GL--RPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 123 ~~~~~~~i~~------------~l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
-.... .+.. .. ....+-|.-|+|...+..-+...+...+..
T Consensus 95 ~~~gi-~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~ 149 (473)
T PRK00141 95 QSQGL-EVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFA 149 (473)
T ss_pred HHCCC-ceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCc
Confidence 21100 0110 01 123466777778777776677777654443
No 298
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.97 E-value=0.0036 Score=57.87 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~ 125 (351)
+|+||+|||+ |..|..+.+.|.+..+ ++.....+..+ . . .+.++...++|++|+|+|. ....+...
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~-----~---~~~~~~~~~~DvvFlalp~-~~s~~~~~- 68 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D-----A---AARRELLNAADVAILCLPD-DAAREAVA- 68 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c-----c---cCchhhhcCCCEEEECCCH-HHHHHHHH-
Confidence 4689999985 9999999999987653 44433322211 1 1 2334555789999999954 44554555
Q ss_pred CCCCcccCCCCCcEEEecCC
Q 018694 126 PSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~ 145 (351)
++. ..+..|||+|.
T Consensus 69 ---~~~---~~g~~VIDlSa 82 (313)
T PRK11863 69 ---LID---NPATRVIDAST 82 (313)
T ss_pred ---HHH---hCCCEEEECCh
Confidence 433 36889999984
No 299
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.95 E-value=0.0028 Score=59.18 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=58.4
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCC-------eEEEEeCCccc--chhHH----h------cCCcccCCHHHhhcCCCEEE
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGY-------TVTVFNRTLSK--AQPLL----D------IGAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~-------~V~~~dr~~~~--~~~~~----~------~g~~~~~~~~~~~~~~DiIi 110 (351)
||+|||+ |.+|..++..|...+. ++.++|++++. ++... + .++...++..+.+.++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999987554 59999996542 21111 0 01222224456788999999
Q ss_pred EecCChh---------------HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 111 SIVGYPS---------------DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 111 ~~vp~~~---------------~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
++...+. .++++.. ++..+..++.++|..+|
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~----~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGR----ALDKLAKKDCKVLVVGN 126 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHH----HHHhhCCCCeEEEEeCC
Confidence 9884421 1344444 55554446667776665
No 300
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.00093 Score=60.52 Aligned_cols=92 Identities=22% Similarity=0.397 Sum_probs=67.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc-CCc---cc---CCHHHhhcCCCEEEEec--CChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI-GAH---LA---DSPHSLASQSDVVFSIV--GYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~-g~~---~~---~~~~~~~~~~DiIi~~v--p~~~~~~ 120 (351)
-||.|||.|-+|+.-|+....-|.+|++.|+|.++++.+-.. +.+ .. .++++.+..+|++|-+| |...+-+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 589999999999999999888899999999999888776554 222 12 24567788999999887 2211111
Q ss_pred HHhhCCCCCcccCCCCCcEEEecCC
Q 018694 121 HVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 121 ~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
=+.+ ++...+.++.+|||+.-
T Consensus 249 Lvt~----e~vk~MkpGsVivDVAi 269 (371)
T COG0686 249 LVTR----EMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ehhH----HHHHhcCCCcEEEEEEE
Confidence 1122 44456779999999875
No 301
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.91 E-value=0.014 Score=57.94 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=72.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC--CHHHhhcCCCEEEEecCChh---HHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPS---DVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~---~~~~v~~ 124 (351)
.||.|+|+|..|.+.++.|...|++|+++|+.++..+.+.+.|+.... ...+.+.++|+||.+-.-+. .+...-.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~ 92 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAA 92 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHH
Confidence 589999999999999999999999999999876665555555765532 23445678898888663222 2222111
Q ss_pred CCC-----CCcc-cC-----C--CCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 125 HPS-----SGAL-SG-----L--RPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 125 ~~~-----~~i~-~~-----l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
... .++. .. . ....+-|.-|+|...+..-+...+...+..
T Consensus 93 ~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 93 AGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred CCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 000 0010 00 0 113466777788777777677777655543
No 302
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.90 E-value=0.0033 Score=58.44 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=62.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccC-----CH-HHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLAD-----SP-HSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~-----~~-~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+|+|+|+|.+|..-.+.....|.+|+.+|+++++.+..++.|....- +. +++-...|+||.+++ +..+...+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l 246 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL 246 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH
Confidence 689999999999888887777899999999999998888877643211 11 222223899999996 77777666
Q ss_pred hCCCCCcccCCCCCcEEEecCC
Q 018694 124 LHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
. . ++++..++....
T Consensus 247 ~----~----l~~~G~~v~vG~ 260 (339)
T COG1064 247 K----A----LRRGGTLVLVGL 260 (339)
T ss_pred H----H----HhcCCEEEEECC
Confidence 5 2 345555555443
No 303
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.90 E-value=0.0014 Score=55.00 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=52.1
Q ss_pred CCCeEEEEccChhhHHHHHHH--HHCCCe-EEEEeCCcccchhHHhcCCcc--cCCHHHhhc--CCCEEEEecCChhHHH
Q 018694 48 TNTRIGWIGTGVMGRSMCAHL--LNAGYT-VTVFNRTLSKAQPLLDIGAHL--ADSPHSLAS--QSDVVFSIVGYPSDVR 120 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L--~~~g~~-V~~~dr~~~~~~~~~~~g~~~--~~~~~~~~~--~~DiIi~~vp~~~~~~ 120 (351)
.|.++.|||+|++|.+++..- .+.|++ +.++|.+++.+...... +.+ .+++++.++ +.|+.|+|| +.....
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~-v~V~~~d~le~~v~~~dv~iaiLtV-Pa~~AQ 160 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD-VPVYDLDDLEKFVKKNDVEIAILTV-PAEHAQ 160 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC-eeeechHHHHHHHHhcCccEEEEEc-cHHHHH
Confidence 357899999999999999863 356776 45779998866543322 333 345555555 789999999 555555
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
++++
T Consensus 161 ~vad 164 (211)
T COG2344 161 EVAD 164 (211)
T ss_pred HHHH
Confidence 5555
No 304
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.26 Score=45.21 Aligned_cols=200 Identities=17% Similarity=0.174 Sum_probs=116.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------------------C----CcccCCHHHh
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------------------G----AHLADSPHSL 102 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------------------g----~~~~~~~~~~ 102 (351)
+|.++.++|+|...--+|.-+...|. ++-+++|-..+-+.+.+. | -....+++++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 46789999999999999999987664 788888865554444331 1 0224567777
Q ss_pred hcCCCEEEEecCChhHHHHHhhCCCCCccc-CCCCCc--EEEecCCCChhHHHHHHHHHhcCCCcEEe------------
Q 018694 103 ASQSDVVFSIVGYPSDVRHVLLHPSSGALS-GLRPGG--IIVDMTTSEPSLASELSAAASSKNCSAID------------ 167 (351)
Q Consensus 103 ~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~-~l~~~~--~ii~~s~~~~~~~~~l~~~~~~~~~~~v~------------ 167 (351)
..+-+.+|+|| +.++..++++ ++-. .+..-+ ++|+-+-|+-...+.....+. ..+.+++
T Consensus 83 ~~dwqtlilav-~aDaY~dvlq----qi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id 156 (431)
T COG4408 83 VGDWQTLILAV-PADAYYDVLQ----QIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYID 156 (431)
T ss_pred hchhheEEEEe-ecHHHHHHHh----cCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeec
Confidence 78889999999 7788888998 6653 233333 344333343334444444443 3333333
Q ss_pred c--cCCCCchhhccCceeEEecC---CHHHHHHHHHHHHhhCc-eEEcCCccHHHHHH-------------HH-------
Q 018694 168 A--PVSGGDRGAKTGTLAIFAGG---DESVVQKLNPLFALMGK-VNYMGGSGKGQFAK-------------LA------- 221 (351)
Q Consensus 168 ~--pv~~~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~k-------------l~------- 221 (351)
. |+..-..+..+ -++.|. +....+.+..+++..|. +..+...-.+.... ..
T Consensus 157 ~~~p~~alTkavKk---riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~ 233 (431)
T COG4408 157 AEQPNRALTKAVKK---RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYP 233 (431)
T ss_pred ccCcchHHHHHHhH---heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCC
Confidence 2 22211111111 133332 55666778888888775 43333221111100 00
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 018694 222 ----------------NQITIATTMVGLVEGMVYAHKAGLNVELFLNAIST 256 (351)
Q Consensus 222 ----------------~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~ 256 (351)
...+..-+...+.|.+.+..+.|++.=.+.+.+..
T Consensus 234 ~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~d 284 (431)
T COG4408 234 EQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLND 284 (431)
T ss_pred cCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhcc
Confidence 11122226677789999999999987666665543
No 305
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.88 E-value=0.013 Score=56.79 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc----hhHHhcCCcccC--CHHHhhcCCCEEEEec--C-ChhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA----QPLLDIGAHLAD--SPHSLASQSDVVFSIV--G-YPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~----~~~~~~g~~~~~--~~~~~~~~~DiIi~~v--p-~~~~~ 119 (351)
+|||.|+|+|.-|.+.++.|.+.|++|+++|.++... ..+...++.+.. ...+...++|+|+..= | ....+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 5899999999999999999999999999999776551 122233443322 1124456788887742 1 11223
Q ss_pred HHHhhCCC-----CCcccCC--CCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCCc
Q 018694 120 RHVLLHPS-----SGALSGL--RPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGGD 174 (351)
Q Consensus 120 ~~v~~~~~-----~~i~~~l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~~ 174 (351)
+.+..... .++.... ...-+-|.-+||...++.-+...+...|....-+.++|.+
T Consensus 87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 33322110 0111111 2335677788888887777777777767666555555443
No 306
>PLN02477 glutamate dehydrogenase
Probab=96.88 E-value=0.0048 Score=59.20 Aligned_cols=108 Identities=13% Similarity=0.115 Sum_probs=69.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCC----------cccchhHHhc-C-------CcccCCHHHh-hcCCCE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRT----------LSKAQPLLDI-G-------AHLADSPHSL-ASQSDV 108 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~----------~~~~~~~~~~-g-------~~~~~~~~~~-~~~~Di 108 (351)
-+||+|.|+|++|...++.|.+.|..|+ +.|.+ .+.+....++ + .... +.+++ ..+||+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 3789999999999999999999999988 66765 2222222222 1 1112 22332 358999
Q ss_pred EEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 109 VFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 109 Ii~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
++-|--...-.++.+. ++ +-++|+...|+. .+ .+-.+.+.++|+.|+.-
T Consensus 285 liP~Al~~~I~~~na~----~i-----~ak~I~egAN~p-~t-~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 285 LIPAALGGVINKENAA----DV-----KAKFIVEAANHP-TD-PEADEILRKKGVVVLPD 333 (410)
T ss_pred EeeccccccCCHhHHH----Hc-----CCcEEEeCCCCC-CC-HHHHHHHHHCCcEEECh
Confidence 9888733333333333 22 466899988884 33 35567777889988854
No 307
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.88 E-value=0.0087 Score=52.12 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=48.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcC-Cccc--CCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIG-AHLA--DSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g-~~~~--~~~~~~~~~~DiIi~~vp~~ 116 (351)
.||.|||.|.+|..-++.|.+.|.+|++++.+.. .++.+.+.| +... .-..+.+..+++||.|+..+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 5899999999999999999999999999987643 334444443 2221 11134467899999998444
No 308
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.0036 Score=56.88 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=57.9
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-| .+|..++..|.+.|..|++++... .++.+.++++|+||.+++++.-+..
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~------- 216 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKA------- 216 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCH-------
Confidence 689999999 999999999999999999985421 2456778899999999977654332
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++.+|.++||++..
T Consensus 217 ---~~vk~GavVIDvGi~ 231 (285)
T PRK14191 217 ---SMVKKGAVVVDIGIN 231 (285)
T ss_pred ---HHcCCCcEEEEeecc
Confidence 234689999998843
No 309
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.79 E-value=0.024 Score=55.50 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=69.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc----chhHHhcCCccc--CCHHHhhcC-CCEEEEec--CC-hhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK----AQPLLDIGAHLA--DSPHSLASQ-SDVVFSIV--GY-PSDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~----~~~~~~~g~~~~--~~~~~~~~~-~DiIi~~v--p~-~~~~ 119 (351)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.|+... ....+.... +|+||... |+ ...+
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~ 85 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMV 85 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHH
Confidence 57999999999999999999999999999986533 233445565543 233444444 89887754 22 2223
Q ss_pred HHHhhCCCCCcc------cC-CCCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 120 RHVLLHPSSGAL------SG-LRPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 120 ~~v~~~~~~~i~------~~-l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
..+..... .+. .. .....+-|.-|+|...+..-+...+...+.
T Consensus 86 ~~a~~~~i-~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~ 135 (447)
T PRK02472 86 EKALEKGI-PIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQ 135 (447)
T ss_pred HHHHHCCC-cEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCC
Confidence 22222100 111 11 133457777777877777767777765443
No 310
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.78 E-value=0.0056 Score=49.47 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=61.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPS- 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~- 117 (351)
.||.|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |........+.+. ++++=+.+.+...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 589999999999999999999999 799999863222221111 2111111112111 2333344442222
Q ss_pred --HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 118 --DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 118 --~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
...+.+ ..-++||++... ......+.+.+...+..++.+...
T Consensus 83 ~~~~~~~~-----------~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 83 EENIEELL-----------KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp HHHHHHHH-----------HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cccccccc-----------cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEee
Confidence 222222 233577776544 555556777777777777776444
No 311
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.77 E-value=0.0079 Score=58.84 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=72.4
Q ss_pred CeEEEEcc----ChhhHHHHHHHHHCCC--eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 50 TRIGWIGT----GVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 50 ~kI~iIG~----G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.+|+|||+ |.+|..+.++|.+.|| +|+.++...+. -.|+..+.+.+++-...|++++|+ ++..+.+++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~v-p~~~~~~~l 81 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVV-PAKYVPQVV 81 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEec-CHHHHHHHH
Confidence 57999999 8899999999999998 56555554322 237888999999888899999999 777777777
Q ss_pred hCCCCCcccCCCCCcEEEecCCCChh-------HHHHHHHHHhcCCCcEE
Q 018694 124 LHPSSGALSGLRPGGIIVDMTTSEPS-------LASELSAAASSKNCSAI 166 (351)
Q Consensus 124 ~~~~~~i~~~l~~~~~ii~~s~~~~~-------~~~~l~~~~~~~~~~~v 166 (351)
+ ++... .-+.++| ++.+.+. ..+++.+..++.+++++
T Consensus 82 ~----e~~~~-gv~~~vi-~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 82 E----ECGEK-GVKGAVV-ITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred H----HHHhc-CCCEEEE-ECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 7 55442 2233333 3443222 23456666655666655
No 312
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.77 E-value=0.0068 Score=51.78 Aligned_cols=86 Identities=24% Similarity=0.226 Sum_probs=60.0
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC-C--ccc--CC----HHHhhcCCCEEEEecCChhH
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG-A--HLA--DS----PHSLASQSDVVFSIVGYPSD 118 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g-~--~~~--~~----~~~~~~~~DiIi~~vp~~~~ 118 (351)
-++|.|||-+. +|..++..|.+.|..|+++|.+.-. .+...+ . ..+ .+ ..+.++++|+||.+++++..
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~--~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~ 139 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQ--VFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNY 139 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccc--ccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCC
Confidence 36899998754 6999999999999999999865321 111100 0 011 12 56788999999999987665
Q ss_pred -HHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 119 -VRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 119 -~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.. +.+++|+++||++..
T Consensus 140 ~i~~----------d~ik~GavVIDVGi~ 158 (197)
T cd01079 140 KVPT----------ELLKDGAICINFASI 158 (197)
T ss_pred ccCH----------HHcCCCcEEEEcCCC
Confidence 332 234689999998854
No 313
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.75 E-value=0.0058 Score=57.80 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=55.4
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh---------------cCCccc-CCHHHhhcCCCEE
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD---------------IGAHLA-DSPHSLASQSDVV 109 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~---------------~g~~~~-~~~~~~~~~~DiI 109 (351)
+|+||+|+| .|.+|..+.+.|.+... +++.+.+++........ ..+.+. .++++ ..++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEE
Confidence 358999997 89999999999987544 77777555433221111 011221 23333 4789999
Q ss_pred EEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 110 FSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 110 i~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
|.|+|.. ...+... .+. ..+..+||.+.
T Consensus 81 f~a~p~~-~s~~~~~----~~~---~~G~~vIDls~ 108 (349)
T PRK08664 81 FSALPSD-VAGEVEE----EFA---KAGKPVFSNAS 108 (349)
T ss_pred EEeCChh-HHHHHHH----HHH---HCCCEEEECCc
Confidence 9999554 3344444 332 35677888885
No 314
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.71 E-value=0.082 Score=47.45 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=67.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCCc-----c-----cchhH---Hhc-C------------CcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRTL-----S-----KAQPL---LDI-G------------AHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~~-----~-----~~~~~---~~~-g------------~~~~~~~~~ 101 (351)
..||.|-|.|++|...++.|.+.|..|+ +.|.+- + .++.+ .+. + .... +.++
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~ 116 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKK 116 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcc
Confidence 3689999999999999999999999888 556321 1 11111 111 1 1222 2333
Q ss_pred h-hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 102 L-ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 102 ~-~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+ ..+||+++-|--...-..+... .+.. .+-++|+...|+ |.+. +-.+.+.++|+.|++-
T Consensus 117 ~~~~~~DIliPcAl~~~I~~~na~----~i~~--~~ak~I~EgAN~-p~t~-~a~~~L~~rGI~vvPD 176 (254)
T cd05313 117 PWEVPCDIAFPCATQNEVDAEDAK----LLVK--NGCKYVAEGANM-PCTA-EAIEVFRQAGVLFAPG 176 (254)
T ss_pred hhcCCCcEEEeccccccCCHHHHH----HHHH--cCCEEEEeCCCC-CCCH-HHHHHHHHCCcEEECc
Confidence 3 3479999888733322222222 2211 145588888887 4444 5667777889988854
No 315
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.71 E-value=0.0062 Score=55.23 Aligned_cols=73 Identities=25% Similarity=0.437 Sum_probs=58.2
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-+ .+|..++..|.+.|..|+++... +.++.+.++++|+||++++++.-+..
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~~------- 216 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLITE------- 216 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccCH-------
Confidence 689999998 88999999999999999988532 13567778999999999987665442
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 217 ---~~vk~gavvIDvGin 231 (281)
T PRK14183 217 ---DMVKEGAIVIDIGIN 231 (281)
T ss_pred ---HHcCCCcEEEEeecc
Confidence 234689999998743
No 316
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.71 E-value=0.014 Score=52.21 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=66.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
.||.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |-..+....+.+. ++++-+.+.+..-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~ 104 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLD 104 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCC
Confidence 589999999999999999999998 799999875433333322 2111111111111 45555555522111
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
-+. +. ..+..-++||+++-. +..-..+.+.....++.++.+...+
T Consensus 105 ~~~-~~-------~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 105 DAE-LA-------ALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred HHH-HH-------HHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111 11 122345688877654 5555556666667788888764443
No 317
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.70 E-value=0.0085 Score=56.37 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=31.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 689999999999999999999999 899999874
No 318
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.70 E-value=0.0056 Score=57.46 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=55.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH-CCCe---EEEEeC--CcccchhHHhcCCcccC-CHHHhhcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN-AGYT---VTVFNR--TLSKAQPLLDIGAHLAD-SPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~-~g~~---V~~~dr--~~~~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
+||+|||+ |..|..+.+.|.+ ..++ +.++.. +..+.-.+..+.+.+.. +.++ ..+.|++|+|+ +.....+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~-~~~~s~~ 83 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSA-GGEVSRQ 83 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECC-ChHHHHH
Confidence 79999988 9999999999995 6666 544432 22221122222223222 3333 47899999999 5555565
Q ss_pred HhhCCCCCcccCCCCCcEEEecCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+.. .+ ...|..|||++.
T Consensus 84 ~~~----~~---~~~G~~VID~Ss 100 (347)
T PRK06728 84 FVN----QA---VSSGAIVIDNTS 100 (347)
T ss_pred HHH----HH---HHCCCEEEECch
Confidence 665 33 246889999884
No 319
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.69 E-value=0.018 Score=56.65 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=69.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEec--CCh-----hHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIV--GYP-----SDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~v--p~~-----~~~~~v 122 (351)
+||.|||+|..|.+.|..|.+.|++|.++|+.......+...|+.......+.+.++|+||..- |+. ..+...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a 89 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLA 89 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHH
Confidence 5899999999999999999999999999997755444455557654332223346789877522 111 123333
Q ss_pred hhCCCCCcc------cCC------CCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 123 LLHPSSGAL------SGL------RPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 123 ~~~~~~~i~------~~l------~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
..... .+. ... ....+-|.-|+|...+..-+...+...+..+
T Consensus 90 ~~~gi-~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~ 143 (460)
T PRK01390 90 RAAGV-EVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV 143 (460)
T ss_pred HHcCC-cEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe
Confidence 22100 001 111 2234667777787777766777776555444
No 320
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.68 E-value=0.018 Score=56.41 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=68.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc-ccc----hhHHhcCCcc--cCCHHHhhcCCCEEEEecCChhHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL-SKA----QPLLDIGAHL--ADSPHSLASQSDVVFSIVGYPSDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~-~~~----~~~~~~g~~~--~~~~~~~~~~~DiIi~~vp~~~~~~~v 122 (351)
++|.|+|.|.+|.++|..|++.|++|+++|++. +.+ +.+.+.|+.. .+..++....+|+||.++..+.....+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence 689999999999999999999999999999975 222 2233335433 223334556799999987422221111
Q ss_pred --hhCCCCCcc-------cCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 123 --LLHPSSGAL-------SGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 123 --~~~~~~~i~-------~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
+......+. .......+-|.-|+|...+.+-+...+...+
T Consensus 86 ~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 86 VQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred HHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 110000010 1112344666667777777666666665544
No 321
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.67 E-value=0.0086 Score=58.01 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=71.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEE-e----------CCcccchhHHhc------------CCcccCCHHHhh-c
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVF-N----------RTLSKAQPLLDI------------GAHLADSPHSLA-S 104 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~-d----------r~~~~~~~~~~~------------g~~~~~~~~~~~-~ 104 (351)
.+||+|.|.|++|...|+.|.+.|..|+.+ | .+.+.+....+. +.... +.+++. .
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~ 310 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSV 310 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcccccc
Confidence 479999999999999999999999998876 7 343333222221 11111 233332 3
Q ss_pred CCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 105 QSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 105 ~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+||+++-|........+... .+.+ .+-++|+...|+ |.+ .+-.+.+.++|+.|+.-
T Consensus 311 d~DVliPaAl~n~It~~~a~----~i~~--~~akiIvEgAN~-p~t-~~A~~~L~~rGI~~vPD 366 (445)
T PRK09414 311 PCDIALPCATQNELDEEDAK----TLIA--NGVKAVAEGANM-PST-PEAIEVFLEAGVLFAPG 366 (445)
T ss_pred CCcEEEecCCcCcCCHHHHH----HHHH--cCCeEEEcCCCC-CCC-HHHHHHHHHCCcEEECc
Confidence 79999999955544444444 3321 144688888887 433 35566777889888854
No 322
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.64 E-value=0.013 Score=47.68 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=57.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|+|- ...|..++..|.+.|..|+.++++. .++++.++++|+|+.+++.+..++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~i~-------- 86 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEKVP-------- 86 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCccC--------
Confidence 68999977 6679999999999999999998642 266778899999999997663322
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..++++|++++|....
T Consensus 87 --~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 87 --TEWIKPGATVINCSPT 102 (140)
T ss_pred --HHHcCCCCEEEEcCCC
Confidence 1346799999987744
No 323
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.64 E-value=0.0044 Score=54.90 Aligned_cols=63 Identities=37% Similarity=0.493 Sum_probs=47.9
Q ss_pred EEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcc--cchhHHhcCCccc-------CCHHHhhcCCCEEEEecC
Q 018694 52 IGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLS--KAQPLLDIGAHLA-------DSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 52 I~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~--~~~~~~~~g~~~~-------~~~~~~~~~~DiIi~~vp 114 (351)
|.|+|+ |.+|..++..|.+.+++|.+..|++. ..+.+.+.|+.+. .++.++++.+|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789986 99999999999999999999999864 3555666665431 233455678888888885
No 324
>PRK06153 hypothetical protein; Provisional
Probab=96.63 E-value=0.0049 Score=58.18 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||+|||+|..|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 79999876
No 325
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.62 E-value=0.0066 Score=46.66 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=46.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cCCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-ADSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
..+|.|||.|.+|..=++.|.+.|.+|++++.+. ...+..+.. ....++.++.+++||.|+ ....+.+.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~----~~~~~~i~~~~~~~~~~l~~~~lV~~at-~d~~~n~~i 77 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI----EFSEGLIQLIRREFEEDLDGADLVFAAT-DDPELNEAI 77 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE----HHHHTSCEEEESS-GGGCTTESEEEE-S-S-HHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch----hhhhhHHHHHhhhHHHHHhhheEEEecC-CCHHHHHHH
Confidence 3689999999999999999999999999999874 111121211 122345577889999999 444444333
No 326
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.55 E-value=0.0071 Score=57.82 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=62.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCC---
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGY--- 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~--- 115 (351)
.||.|+|+|.+|+.++..|+..|. +++++|++.-....+..+ |........+.+. +.++-+.+.+.
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~ 215 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT 215 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 689999999999999999999998 799999874222222211 1111111111111 23443333311
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
...+.+.+ .+-++||+++-. +..-..+.+.....++.++.+.+.+
T Consensus 216 ~~~~~~~~-----------~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 216 SDNVEALL-----------QDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred hHHHHHHH-----------hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11122222 244578877654 3333345666666788888775543
No 327
>PRK08328 hypothetical protein; Provisional
Probab=96.53 E-value=0.016 Score=51.57 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=67.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccC---C--HHHh----h--cCCCEEEEecCChh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLAD---S--PHSL----A--SQSDVVFSIVGYPS 117 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~---~--~~~~----~--~~~DiIi~~vp~~~ 117 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+-+.... . -.++ + -++|+.+.+.+...
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~ 107 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL 107 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 579999999999999999999998 699998775433333322110000 0 1111 1 15677777653221
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
.++-+. + .+.+-++|+++.-. +.+-..+.+.....++.++.+.+.+.
T Consensus 108 -~~~~~~----~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 108 -SEENID----E---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEGT 154 (231)
T ss_pred -CHHHHH----H---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeeccC
Confidence 111111 1 22355688887655 44444555566667888887755543
No 328
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.51 E-value=0.034 Score=50.51 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEE-EeCCccc--ch-hHHhcCCccc--CCHHHhhc-----CCC-EEEEecC
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTV-FNRTLSK--AQ-PLLDIGAHLA--DSPHSLAS-----QSD-VVFSIVG 114 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~-~dr~~~~--~~-~~~~~g~~~~--~~~~~~~~-----~~D-iIi~~vp 114 (351)
+.+||.|.|+ |.||...++.+.+.+++++. .++.++- .. .+...++.+. +++++.+. .+| ++|=.+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT- 88 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYT- 88 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECC-
Confidence 3479999998 99999999999888888664 4554322 11 2222245555 77887772 478 677777
Q ss_pred ChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 115 YPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 115 ~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.|..+.+.+. .. +..+..+|.-+|+.... ++.+....+++.++-+|++.
T Consensus 89 ~P~a~~~~~~----~~---~~~g~~~VvGTTG~~~e--~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 89 LPDAVNDNAE----LY---CKNGLPFVMGTTGGDRD--RLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred ChHHHHHHHH----HH---HHCCCCEEEECCCCCHH--HHHHHHhcCCccEEEECccc
Confidence 7777776665 22 23455566666664432 44444444567777777774
No 329
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.51 E-value=0.0086 Score=55.50 Aligned_cols=119 Identities=21% Similarity=0.237 Sum_probs=67.4
Q ss_pred CCCeEEEEccChhhHHHHHHHHHC--------CCeEE---EEeCCcccchhHHhcC-CcccCCH-----HHhh--cCCCE
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNA--------GYTVT---VFNRTLSKAQPLLDIG-AHLADSP-----HSLA--SQSDV 108 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~--------g~~V~---~~dr~~~~~~~~~~~g-~~~~~~~-----~~~~--~~~Di 108 (351)
+++||+|+|.|.+|+.+++.|.++ |.++. +.+|+....+.+.-.+ ....++. .+++ .+.|+
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 81 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDV 81 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCE
Confidence 357999999999999999999875 33433 3355544433111111 1222333 3433 35679
Q ss_pred EEEecCC-hhHHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEE-eccCC
Q 018694 109 VFSIVGY-PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAI-DAPVS 171 (351)
Q Consensus 109 Ii~~vp~-~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v-~~pv~ 171 (351)
|+.+++. ....+. .. .+..++..++.||...+... ..-.++.+...+.++.+. .+.+.
T Consensus 82 vve~~~~d~~~~~~-~~----~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~ 142 (333)
T COG0460 82 VVELVGGDVEPAEP-AD----LYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVG 142 (333)
T ss_pred EEecCcccCCchhh-HH----HHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeec
Confidence 9998865 333342 33 44556678888886665421 122356666555565443 44344
No 330
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.51 E-value=0.038 Score=50.71 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=72.5
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHHhhcC--CCEEEEecCChhHHHHHhhC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQ--SDVVFSIVGYPSDVRHVLLH 125 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~~~ 125 (351)
.||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+. -.|+..+.+.+|+... .|+.++++ +...+.++++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~v-p~~~v~~~l~- 83 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYV-PPPFAADAIL- 83 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEc-CHHHHHHHHH-
Confidence 68999998 88999999999998887 555555541 111 1378889999998886 89999999 6666666776
Q ss_pred CCCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcCCCcEE
Q 018694 126 PSSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSKNCSAI 166 (351)
Q Consensus 126 ~~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~~~~~v 166 (351)
+....- -+..+| .+.+.+.. .+++.+..++.+++++
T Consensus 84 ---e~~~~g-vk~avI-~s~Gf~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 84 ---EAIDAG-IDLIVC-ITEGIPVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred ---HHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 554421 122233 44443322 2366677766677665
No 331
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.49 E-value=0.0084 Score=54.37 Aligned_cols=73 Identities=27% Similarity=0.412 Sum_probs=58.4
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||-+ ..|..++..|...|..|+++.+.. .++.+.++++|+||.+++++.-+..
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~------- 211 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITP------- 211 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCH-------
Confidence 689999999 999999999999999999998642 3577788999999999976633221
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
..+++|++|||++..
T Consensus 212 ---~~vk~GavVIDVgi~ 226 (279)
T PRK14178 212 ---DMVKPGATVIDVGIN 226 (279)
T ss_pred ---HHcCCCcEEEEeecc
Confidence 224799999998843
No 332
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.49 E-value=0.0083 Score=56.19 Aligned_cols=88 Identities=13% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCC---eEEEEeCC--cccchhHHhcCCcccCCHHHhh-cCCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGY---TVTVFNRT--LSKAQPLLDIGAHLADSPHSLA-SQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~---~V~~~dr~--~~~~~~~~~~g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~ 121 (351)
.+||+|||+ |..|..+.+.|.+..| ++..+... ..+.-.+....+.+. +.++.. .++|++|+|+ +.....+
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~-p~~~s~~ 81 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVA-GREASAA 81 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECC-CHHHHHH
Confidence 479999988 9999999999998655 55555332 222111221123333 334332 6799999999 4445555
Q ss_pred HhhCCCCCcccCCCCCcEEEecCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
... .+. ..|..|||++.
T Consensus 82 ~~~----~~~---~~g~~VIDlS~ 98 (336)
T PRK08040 82 YAE----EAT---NAGCLVIDSSG 98 (336)
T ss_pred HHH----HHH---HCCCEEEECCh
Confidence 555 332 36889999984
No 333
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.45 E-value=0.016 Score=56.12 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=47.9
Q ss_pred CeEEEEccChh-hHHHHHHHHHC-----CCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVM-GRSMCAHLLNA-----GYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~m-G~~ia~~L~~~-----g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|+. +..+...|... +.+|+++|+++++.+.... .| +..++|.++++.++|+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 69999999985 22355566543 3489999999987654322 13 4568899999999999999
Q ss_pred ec
Q 018694 112 IV 113 (351)
Q Consensus 112 ~v 113 (351)
..
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred ee
Confidence 88
No 334
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.43 E-value=0.0069 Score=56.49 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=48.6
Q ss_pred EEEEccChhhHHHHHHHHHC-CCeEE-EEeCCcccchhHHh-------------------cCCcccCCHHHhhcCCCEEE
Q 018694 52 IGWIGTGVMGRSMCAHLLNA-GYTVT-VFNRTLSKAQPLLD-------------------IGAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 52 I~iIG~G~mG~~ia~~L~~~-g~~V~-~~dr~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~DiIi 110 (351)
|||+|+|.+|..+++.+.+. +.+|+ +.|.+++....+.. .++.+..+++++..++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998753 45655 45666654333322 13445667889989999999
Q ss_pred EecCChhHH
Q 018694 111 SIVGYPSDV 119 (351)
Q Consensus 111 ~~vp~~~~~ 119 (351)
.|+|...+.
T Consensus 81 e~Tp~~~~~ 89 (333)
T TIGR01546 81 DATPGGIGA 89 (333)
T ss_pred ECCCCCCCh
Confidence 999766544
No 335
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.43 E-value=0.0083 Score=56.69 Aligned_cols=88 Identities=15% Similarity=0.258 Sum_probs=55.1
Q ss_pred CCeEEEEcc-ChhhHHHHH-HHHHCCCe---EEEEeCCc--ccchhHHhcCCcccC--CHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCA-HLLNAGYT---VTVFNRTL--SKAQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~-~L~~~g~~---V~~~dr~~--~~~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
|+||+|||+ |.+|..+.+ .|....++ +..+.... .+...+..+...+.. +.+ ...++|++|+|+ +....
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~-~~~~s 78 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQ-GGDYT 78 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECC-CHHHH
Confidence 589999988 999999998 66666666 66654431 122222222222222 233 347899999999 55566
Q ss_pred HHHhhCCCCCcccCCCCC--cEEEecCC
Q 018694 120 RHVLLHPSSGALSGLRPG--GIIVDMTT 145 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~--~~ii~~s~ 145 (351)
+++.. .+. ..| .+|||.++
T Consensus 79 ~~~~~----~~~---~aG~~~~VID~Ss 99 (369)
T PRK06598 79 NEVYP----KLR---AAGWQGYWIDAAS 99 (369)
T ss_pred HHHHH----HHH---hCCCCeEEEECCh
Confidence 66665 432 356 56999884
No 336
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.42 E-value=0.024 Score=50.29 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=30.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|+|+|.+|+.+++.|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 799998764
No 337
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.41 E-value=0.0064 Score=57.21 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred eEEEEc-cChhhHHHHHHHHHCCCeE---EEEeCCcccchhHHhcC--CcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 51 RIGWIG-TGVMGRSMCAHLLNAGYTV---TVFNRTLSKAQPLLDIG--AHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 51 kI~iIG-~G~mG~~ia~~L~~~g~~V---~~~dr~~~~~~~~~~~g--~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
||+||| .|..|..+.+.|.+.+|++ .++.+....-+.+...| +...+...+.+.++|++|+|+ +.....+...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~-g~~~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSA-GGSVSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECC-CHHHHHHHHH
Confidence 699998 6999999999999988863 34444433322222222 222211123347899999999 4445555554
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+ +..|..|||++.
T Consensus 80 ----~~---~~~G~~VID~ss 93 (339)
T TIGR01296 80 ----KA---AKCGAIVIDNTS 93 (339)
T ss_pred ----HH---HHCCCEEEECCH
Confidence 33 235778999884
No 338
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.41 E-value=0.0094 Score=54.50 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=28.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
||.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 69999999999999999999998 68888865
No 339
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.41 E-value=0.047 Score=49.98 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=74.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcC--CCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQ--SDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.||.|.|. |.+|..+-..+...|++ .++..++.+-.. .-.|+..+.+.+|+... .|+.++++ +...+.++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~-~v~G~~~y~sv~dlp~~~~~Dlavi~v-pa~~v~~~l~-- 81 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGT-TVLGLPVFDSVKEAVEETGANASVIFV-PAPFAADAIF-- 81 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcc-eecCeeccCCHHHHhhccCCCEEEEec-CHHHHHHHHH--
Confidence 57999997 99999999999999998 667777652111 11378889999998876 79999999 6666776776
Q ss_pred CCCcccCCCCCcEEEecCCCChhH-HHHHHHHHhcCCCcEE
Q 018694 127 SSGALSGLRPGGIIVDMTTSEPSL-ASELSAAASSKNCSAI 166 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~~~~~-~~~l~~~~~~~~~~~v 166 (351)
+.... .-+..+| ++.+.+.. .+++.+..++.+++++
T Consensus 82 --e~~~~-Gvk~avI-is~Gf~e~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 82 --EAIDA-GIELIVC-ITEGIPVHDMLKVKRYMEESGTRLI 118 (286)
T ss_pred --HHHHC-CCCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 54432 1222333 45554433 3466666666676665
No 340
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.37 E-value=0.018 Score=56.05 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=47.4
Q ss_pred CeEEEEccChhhH-HHHHHHHHC-----CCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEEE
Q 018694 50 TRIGWIGTGVMGR-SMCAHLLNA-----GYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 50 ~kI~iIG~G~mG~-~ia~~L~~~-----g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi~ 111 (351)
|||+|||+|+.=+ .+...|... +-+|+++|.++++++.... .| +..++|..+++..+|+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 7999999998622 355555543 3489999999987655322 12 4567899999999999999
Q ss_pred ec
Q 018694 112 IV 113 (351)
Q Consensus 112 ~v 113 (351)
..
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 88
No 341
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.37 E-value=0.048 Score=47.19 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=63.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhh--cCCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLA--SQSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~--~~~DiIi~~vp~~~~ 118 (351)
.||.|+|+|.+|+.+++.|+..|. .++++|.+.=....+..+ |-.......+.+ -++++-+.+......
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~ 101 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDIS 101 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 579999999999999999999999 599998763221111111 111111111111 145665555422111
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
+... + .+..-++||++.. .......+.+.....++.++.+...|
T Consensus 102 --~~~~----~---~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 102 --EKPE----E---FFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccHH----H---HHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 1111 1 1123357776543 35555567777777788887665543
No 342
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.36 E-value=0.023 Score=50.89 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=61.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChhH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPSD 118 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~~ 118 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |-..+....+.+. ++++-+.+.+....
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~ 112 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD 112 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 689999999999999999999998 799998874333233222 2111111111111 34444444422111
Q ss_pred HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccC
Q 018694 119 VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPV 170 (351)
Q Consensus 119 ~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv 170 (351)
.+-.. ..+..-++||+++-. +..-..+.+.....++.++.+.+
T Consensus 113 -~~~~~-------~~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 113 -DDELA-------ALIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred -HHHHH-------HHHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeee
Confidence 11111 112244577776643 44444466666566777776533
No 343
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.013 Score=54.18 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=55.8
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCe---EEEE--eCCcccc-hhHHhcCCcccC--CHHHhhcCCCEEEEecCChhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYT---VTVF--NRTLSKA-QPLLDIGAHLAD--SPHSLASQSDVVFSIVGYPSDV 119 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~---V~~~--dr~~~~~-~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~~~~ 119 (351)
++||+|+|+ |.+|..|.+.|.+..++ +.++ .|+..+- ..+....+.+-. .......++|++|.|. .....
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~a-g~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAA-GGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeC-chHHH
Confidence 479999976 99999999999987553 3333 4444332 334333223222 1122345899999999 44444
Q ss_pred HHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 120 RHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 120 ~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
+++.. .+. ..|.++||.++
T Consensus 80 ~~~~p----~~~---~~G~~VIdnsS 98 (334)
T COG0136 80 KEVEP----KAA---EAGCVVIDNSS 98 (334)
T ss_pred HHHHH----HHH---HcCCEEEeCCc
Confidence 65665 333 46788998774
No 344
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.34 E-value=0.017 Score=54.74 Aligned_cols=87 Identities=29% Similarity=0.413 Sum_probs=60.3
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHh-cCCcccCCHH---------Hhh--cCCCEEEEecCChh
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLD-IGAHLADSPH---------SLA--SQSDVVFSIVGYPS 117 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~-~g~~~~~~~~---------~~~--~~~DiIi~~vp~~~ 117 (351)
++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .|.....+.. +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 79999999999999888887886 68888999999888877 3443322221 111 24899999997665
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+.+.+. .+.++..++.++.
T Consensus 251 ~~~~ai~--------~~r~gG~v~~vGv 270 (350)
T COG1063 251 ALDQALE--------ALRPGGTVVVVGV 270 (350)
T ss_pred HHHHHHH--------HhcCCCEEEEEec
Confidence 5665554 3445555555554
No 345
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.33 E-value=0.057 Score=52.92 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=70.3
Q ss_pred eEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccC-CHHHhhcCCCEEEEec--CC-hhHHHHHhh
Q 018694 51 RIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLAD-SPHSLASQSDVVFSIV--GY-PSDVRHVLL 124 (351)
Q Consensus 51 kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~v--p~-~~~~~~v~~ 124 (351)
+|.|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.+.++|+||..- |+ ...+....+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4889999999998 99999999999999997643 23445555766542 2234456789887753 21 223333322
Q ss_pred CCC-----CCcc-cCC-CCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 125 HPS-----SGAL-SGL-RPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 125 ~~~-----~~i~-~~l-~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
... .++. ..+ ....+-|.-|+|...++.-+...+...|.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 100 0111 111 23457777788877777777777765553
No 346
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.32 E-value=0.014 Score=54.98 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=53.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCC-CeEEEE-eCCcccchhHHhc-------C-------CcccCCHHHhhcCCCEEEEe
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAG-YTVTVF-NRTLSKAQPLLDI-------G-------AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g-~~V~~~-dr~~~~~~~~~~~-------g-------~~~~~~~~~~~~~~DiIi~~ 112 (351)
|||+|+|+ |.||..+++.|.+.. +++..+ +..+..-+.+.+. + +.+.+..++...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 58999996 999999999998866 577655 5443322222110 0 11111122344789999999
Q ss_pred cCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC
Q 018694 113 VGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 113 vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+|... ..++.. .+. ..|..+||++..
T Consensus 81 ~p~~~-s~~~~~----~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEV-AEEVEP----KLA---EAGKPVFSNASN 106 (341)
T ss_pred CCHHH-HHHHHH----HHH---HCCCEEEECChh
Confidence 95543 333444 332 357778888743
No 347
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.31 E-value=0.0065 Score=46.99 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred hHHHHHHHHHCCCeEEEEeCCcccchhHH---hcCCcccCCHHHhhcCCCEEEEecCChhHHHHH-hhCCCCCcccCCCC
Q 018694 61 GRSMCAHLLNAGYTVTVFNRTLSKAQPLL---DIGAHLADSPHSLASQSDVVFSIVGYPSDVRHV-LLHPSSGALSGLRP 136 (351)
Q Consensus 61 G~~ia~~L~~~g~~V~~~dr~~~~~~~~~---~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v-~~~~~~~i~~~l~~ 136 (351)
+..+++.|.+.|.+|.+||..-....... ..++...+++++.++.+|.||+++ +......+ .. .+...+.+
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t-~h~~f~~l~~~----~~~~~~~~ 93 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLAT-DHDEFRELDWE----EIAKLMRK 93 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHH----HHHHHSCS
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEe-cCHHHhccCHH----HHHHhcCC
Confidence 57789999999999999998755433333 246888889999999999999999 55544432 22 33344557
Q ss_pred CcEEEecCCC
Q 018694 137 GGIIVDMTTS 146 (351)
Q Consensus 137 ~~~ii~~s~~ 146 (351)
+.+|+|+-+.
T Consensus 94 ~~~iiD~~~~ 103 (106)
T PF03720_consen 94 PPVIIDGRNI 103 (106)
T ss_dssp SEEEEESSST
T ss_pred CCEEEECccc
Confidence 8899998654
No 348
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=96.30 E-value=0.015 Score=51.65 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=76.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCC---CeEEEEeCCcccchhHHhc----------CCcccCCHHHhhcCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG---YTVTVFNRTLSKAQPLLDI----------GAHLADSPHSLASQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g---~~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~~DiIi~~vp~~ 116 (351)
.-..++|.|..+-.+.....+.- .+|.+|+|+.+..+.+.+. .+..+.+.++++..+|+|+.|++.
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls- 217 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS- 217 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc-
Confidence 45788999999998877766542 3899999999888777662 245677889999999999999943
Q ss_pred hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 117 SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 117 ~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+..+. ..++.+++. ||+-.+......+....+-+.++.|+|.
T Consensus 218 --tePilf------gewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 218 --TEPILF------GEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDS 260 (333)
T ss_pred --CCceee------eeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEec
Confidence 233333 345667754 4444444444556666665667888876
No 349
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.28 E-value=0.021 Score=58.74 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=32.6
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
..+||+|||+|..|.+.|..|.+.|++|+++++.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 347999999999999999999999999999998643
No 350
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.27 E-value=0.016 Score=51.61 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCC-----------CeEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAG-----------YTVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g-----------~~V~~~dr~ 81 (351)
.||.|||+|.+|+.+++.|++.| .+++++|.+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 68999999999999999999863 288999876
No 351
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.27 E-value=0.032 Score=54.42 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=70.8
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-ch----hHH-hcCCcccC-CHHHhhcCCCEEEEecCCh---hHHH
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQ----PLL-DIGAHLAD-SPHSLASQSDVVFSIVGYP---SDVR 120 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~----~~~-~~g~~~~~-~~~~~~~~~DiIi~~vp~~---~~~~ 120 (351)
||.|||.|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+.... ...+.+.++|+||..-.-+ ..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999999999999976442 21 122 23665432 1244457789877654211 2232
Q ss_pred HHhhCCC-----CCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 121 HVLLHPS-----SGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 121 ~v~~~~~-----~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+..... .++. ..+....+-|.-++|...++.-+...+...+..+.-+
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~ 134 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLG 134 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 2221100 0111 1123345777777787777777777776656554433
No 352
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.019 Score=52.34 Aligned_cols=73 Identities=25% Similarity=0.458 Sum_probs=57.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|||- ..+|..++..|.+.|..|+++... +.++.+...++|+||++++++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~------- 214 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLITP------- 214 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-------
Confidence 68999987 567999999999999999988743 23577788899999999987764432
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 215 ---~~vk~GavVIDVGin 229 (287)
T PRK14173 215 ---EMVRPGAVVVDVGIN 229 (287)
T ss_pred ---HHcCCCCEEEEccCc
Confidence 235689999998743
No 353
>PRK08223 hypothetical protein; Validated
Probab=96.25 E-value=0.023 Score=51.84 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=62.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCC---
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGY--- 115 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~--- 115 (351)
.||.|||+|.+|+.++..|+.+|. +++++|.+.=....+..+ |-..+....+.+. ++++=|.+.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~ 107 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIG 107 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 579999999999999999999998 799998764322222222 2111111122121 23333444421
Q ss_pred hhHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 116 PSDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 116 ~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
...+.+++ ..-++|||++... ..+-..+.+.....++.++.+.+.+
T Consensus 108 ~~n~~~ll-----------~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 108 KENADAFL-----------DGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred ccCHHHHH-----------hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11222222 2445788776432 1333455556666778887765444
No 354
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.24 E-value=0.019 Score=58.87 Aligned_cols=67 Identities=28% Similarity=0.409 Sum_probs=48.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc---------------------cchhHHhcCCccc--------CC
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS---------------------KAQPLLDIGAHLA--------DS 98 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~---------------------~~~~~~~~g~~~~--------~~ 98 (351)
...||+|||.|..|...|..|.+.|++|++|++.+. ..+.+.+.|+.+. .+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 357999999999999999999999999999998763 1222333354321 13
Q ss_pred HHHhhcCCCEEEEecC
Q 018694 99 PHSLASQSDVVFSIVG 114 (351)
Q Consensus 99 ~~~~~~~~DiIi~~vp 114 (351)
.++.....|.||+++.
T Consensus 389 ~~~l~~~~DaV~latG 404 (639)
T PRK12809 389 FSDLTSEYDAVFIGVG 404 (639)
T ss_pred HHHHHhcCCEEEEeCC
Confidence 4455567899999884
No 355
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.041 Score=54.41 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=68.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-c----chhHHhcCCcccCC-HHHhhcCCCEEEEecCC---hhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-K----AQPLLDIGAHLADS-PHSLASQSDVVFSIVGY---PSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~----~~~~~~~g~~~~~~-~~~~~~~~DiIi~~vp~---~~~~~ 120 (351)
++|.|||.|..|..+|..|.+.|++|+++|+++. . .+.+.+.|+.+... ..+....+|+||++..- ...+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHH
Confidence 5899999999999999999999999999996642 1 23355557655321 11133568999988732 22222
Q ss_pred HHhhCCC-----CCcc-cCCCC----CcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 121 HVLLHPS-----SGAL-SGLRP----GGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 121 ~v~~~~~-----~~i~-~~l~~----~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
.+-.... .++. ....+ ..+-|.-|+|...++.-+...+...+.
T Consensus 97 ~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~ 149 (480)
T PRK01438 97 AAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGL 149 (480)
T ss_pred HHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCC
Confidence 1111000 0111 11211 246777777877777767777765443
No 356
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.23 E-value=0.023 Score=52.34 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=51.2
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
.||+|+|+ |..|..+.+.|....+ ++....-+. . .. ..+.+++.+++|++|+|+|. ....+...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-~--------~~-~~~~~~~~~~~D~vFlalp~-~~s~~~~~--- 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-R--------KD-AAERAKLLNAADVAILCLPD-DAAREAVS--- 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-c--------cC-cCCHhHhhcCCCEEEECCCH-HHHHHHHH---
Confidence 48999976 9999999999987543 333332111 1 11 12455666789999999954 44555554
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
.+. ..+..|||+|.
T Consensus 68 -~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 68 -LVD---NPNTCIIDAST 81 (310)
T ss_pred -HHH---hCCCEEEECCh
Confidence 332 36788999984
No 357
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.019 Score=52.52 Aligned_cols=73 Identities=22% Similarity=0.417 Sum_probs=57.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||- .-+|..++..|.+.|..|+++... +.++.+.++++|+||+|++++..+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~------- 217 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIGA------- 217 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 68999987 457999999999999999998642 23677788999999999987764432
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 218 ---~~ik~gavVIDvGin 232 (297)
T PRK14186 218 ---EMVKPGAVVVDVGIH 232 (297)
T ss_pred ---HHcCCCCEEEEeccc
Confidence 245689999998743
No 358
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.22 E-value=0.042 Score=50.80 Aligned_cols=40 Identities=30% Similarity=0.588 Sum_probs=31.7
Q ss_pred CeEEEEccChhhHHHHHHHHH-CCCeEE-EEeCCcccchhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-AGYTVT-VFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~g~~V~-~~dr~~~~~~~~~ 89 (351)
-|||+||+|.||+.+...... .|++|+ +.||+.+..++..
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~ 59 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY 59 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH
Confidence 589999999999999998875 688866 5588877655443
No 359
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.021 Score=51.93 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=58.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||- .-+|..++..|.+.|..|++++.. +.++.+..+++|+||.+++++..+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~~------- 218 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIKA------- 218 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccCH-------
Confidence 68999987 567999999999999999999743 23567778999999999987765443
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 219 ---~~ik~gavVIDvGin 233 (284)
T PRK14177 219 ---DWISEGAVLLDAGYN 233 (284)
T ss_pred ---HHcCCCCEEEEecCc
Confidence 234699999998853
No 360
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.21 E-value=0.049 Score=49.26 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=70.1
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCCeEEEE--eCCcc--cchhHHhcCCcc------cCCHHHhhcC-CC-EEEEecCChh
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGYTVTVF--NRTLS--KAQPLLDIGAHL------ADSPHSLASQ-SD-VVFSIVGYPS 117 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~~V~~~--dr~~~--~~~~~~~~g~~~------~~~~~~~~~~-~D-iIi~~vp~~~ 117 (351)
||.|.|+ |.||...++...+.+++++.. ++... ....+...++.+ ..+++++... +| ++|=.+ .|.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 6899988 999999999988888887764 33211 122222224555 6778887766 89 777777 777
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.+.+.+. .. +..+..+|..+++.... ++.+.....++.++-+|++.
T Consensus 81 ~~~~n~~----~~---~~~gv~~ViGTTG~~~~--~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 81 AVNDNAA----FY---GKHGIPFVMGTTGGDRE--ALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred HHHHHHH----HH---HHCCCCEEEcCCCCCHH--HHHHHHHhcCCCEEEECccc
Confidence 7666665 22 33555666666664322 33333333356667677763
No 361
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.20 E-value=0.015 Score=55.43 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 689999999999999999999997 899999873
No 362
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.20 E-value=0.013 Score=52.60 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=35.6
Q ss_pred CCCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 46 CPTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 46 ~~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
+..+|||.|+|+ |.+|..+++.|.+.|++|++..|++++...
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 56 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKT 56 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 344689999995 999999999999999999999998766443
No 363
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.064 Score=52.49 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=70.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHh--cCCcccC--CHHHhhcCCCEEEEecCCh---hHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLD--IGAHLAD--SPHSLASQSDVVFSIVGYP---SDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~--~g~~~~~--~~~~~~~~~DiIi~~vp~~---~~~ 119 (351)
.++|.|+|.|..|.+.|+.|.+.|++|+++|.++.. .+.+.+ .|+.... ..++...++|+||....-+ ..+
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~ 84 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDI 84 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHH
Confidence 368999999999999999999999999999976542 233433 2554321 1233446789988865222 233
Q ss_pred HHHhhCCCCCcc-------cCC---CCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 120 RHVLLHPSSGAL-------SGL---RPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 120 ~~v~~~~~~~i~-------~~l---~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
..+.+... .+. ..+ ....+-|.-|+|...++.-+...+...+..
T Consensus 85 ~~a~~~~i-~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 85 EAFKQNGG-RVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHHcCC-cEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 33222100 111 111 124577777778777777777777655544
No 364
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.19 E-value=0.051 Score=47.42 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=49.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc-ccchhHHhcC-Ccc---cCCHHHhhcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL-SKAQPLLDIG-AHL---ADSPHSLASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~-~~~~~~~~~g-~~~---~~~~~~~~~~~DiIi~~vp~~~~~~ 120 (351)
++|.|||.|..|..=++.|.+.|.+|+++.... +.+..+.+.+ +.. .-+.++ ...+++||.|+ ++..+.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt-~d~~ln 86 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAAT-DDEELN 86 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeC-CCHHHH
Confidence 689999999999999999999999999998765 4444444443 211 112333 34599999999 544433
No 365
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.18 E-value=0.022 Score=51.78 Aligned_cols=73 Identities=25% Similarity=0.448 Sum_probs=57.8
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+++.|||-+ -+|..++..|.+.|..|+++... +.++.+.++++|+||.+++++.-+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~~------- 216 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVKK------- 216 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-------
Confidence 689999875 56999999999999999998642 23577788999999999987764442
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 217 ---~~vk~GavVIDvGin 231 (284)
T PRK14170 217 ---DYIKPGAIVIDVGMD 231 (284)
T ss_pred ---HHcCCCCEEEEccCc
Confidence 234689999998744
No 366
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.17 E-value=0.021 Score=51.94 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=57.7
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-+ .+|..++..|.+.|..|+++... +.++.+...++|+||.+++++..+..-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~~~------ 217 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNLLRSD------ 217 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCHH------
Confidence 689999875 57999999999999999988753 235777889999999999887654432
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++++|.++||++.
T Consensus 218 ----~vk~GavVIDvGi 230 (282)
T PRK14166 218 ----MVKEGVIVVDVGI 230 (282)
T ss_pred ----HcCCCCEEEEecc
Confidence 3468999999874
No 367
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.17 E-value=0.049 Score=52.27 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=63.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-cC--CHHHh-----hcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-AD--SPHSL-----ASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-~~--~~~~~-----~~~~DiIi~~vp~~~~~~~ 121 (351)
..|-|+|.|.+|..+++.|.+.|.+|++++.+. .+...++|... .. +.++. +++++.++++++++.....
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF 318 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence 469999999999999999999999999998652 23333333221 11 12222 3578999998865554444
Q ss_pred HhhCCCCCcccCCCCC-cEEEecCCCChhHHHHHHHHHhcCCCcEEecc
Q 018694 122 VLLHPSSGALSGLRPG-GIIVDMTTSEPSLASELSAAASSKNCSAIDAP 169 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~-~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~p 169 (351)
++. .... +.++ ++++-..+ +.. .+.+.+.|...+-.|
T Consensus 319 ivL----~ar~-l~p~~kIIa~v~~--~~~----~~~L~~~GaD~VIsp 356 (393)
T PRK10537 319 VVL----AAKE-MSSDVKTVAAVND--SKN----LEKIKRVHPDMIFSP 356 (393)
T ss_pred HHH----HHHH-hCCCCcEEEEECC--HHH----HHHHHhcCCCEEECH
Confidence 443 3332 3343 45554332 322 333444566665443
No 368
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.17 E-value=0.091 Score=45.48 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=63.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc----------CCcccCCHHHhh--cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI----------GAHLADSPHSLA--SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~~~--~~~DiIi~~vp~~ 116 (351)
.||.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+ |...+....+.+ -++++-+.+....
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence 689999999999999999999998 599998763221121111 111111111111 1355555555221
Q ss_pred hH-HHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 117 SD-VRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 117 ~~-~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
.. ..+-.. ..+.+-.+||++.. .......+.+...+.++.++.+-..
T Consensus 100 ~~~~~~~~~-------~~~~~~dvVi~~~d-~~~~~~~ln~~c~~~~ip~i~~~~~ 147 (198)
T cd01485 100 SLSNDSNIE-------EYLQKFTLVIATEE-NYERTAKVNDVCRKHHIPFISCATY 147 (198)
T ss_pred cccchhhHH-------HHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEee
Confidence 10 011111 11224457776643 3555566777777778888776443
No 369
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.16 E-value=0.021 Score=51.75 Aligned_cols=73 Identities=22% Similarity=0.449 Sum_probs=57.9
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+++.|||- ..+|..++..|.++|..|++++.. +.++.+...++|+||.+++++..+..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~------ 217 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDE------ 217 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH------
Confidence 368999987 567999999999999999999743 23677778899999999987765442
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||+..
T Consensus 218 ----~~ik~gavVIDvGi 231 (278)
T PRK14172 218 ----EYVKEGAIVIDVGT 231 (278)
T ss_pred ----HHcCCCcEEEEeec
Confidence 23468999999864
No 370
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.023 Score=51.71 Aligned_cols=72 Identities=22% Similarity=0.506 Sum_probs=57.1
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-+ .+|..++..|.+.|..|+++... +.++.+..+++|+||++++++..+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~~------- 215 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIGA------- 215 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 689999875 57999999999999999988642 13577778899999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 216 ---~~vk~GavVIDvGi 229 (282)
T PRK14169 216 ---DAVKPGAVVIDVGI 229 (282)
T ss_pred ---HHcCCCcEEEEeec
Confidence 23468999999874
No 371
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.14 E-value=0.063 Score=53.37 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=68.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHhc--CCcccC--CHHHhhcCCCEEEEe--cCCh-----
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDI--GAHLAD--SPHSLASQSDVVFSI--VGYP----- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~~--g~~~~~--~~~~~~~~~DiIi~~--vp~~----- 116 (351)
.||.|+|.|..|.++|+.|.+.|++|+++|..... .+.+... |+.... ..++.+.++|+||.. +|+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~ 87 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALA 87 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccC
Confidence 58999999999999999999999999999975432 2334444 333321 234455689988886 3221
Q ss_pred hHHHHHhhCCC-----C----CcccC-----CCCCcEEEecCCCChhHHHHHHHHHhcCCCc
Q 018694 117 SDVRHVLLHPS-----S----GALSG-----LRPGGIIVDMTTSEPSLASELSAAASSKNCS 164 (351)
Q Consensus 117 ~~~~~v~~~~~-----~----~i~~~-----l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~ 164 (351)
..+...-.... . .+... ..+..+-|.-++|...++.-+...+...+..
T Consensus 88 ~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 88 PLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred HHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 22221111000 0 11110 1124567777788777777777777655543
No 372
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.13 E-value=0.019 Score=51.73 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=58.7
Q ss_pred CCeEEEEccCh-hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTGV-MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G~-mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-.++.|||-++ +|..|+..|...+..|+++... +.++.+..+++|+++.++.++..+..
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~~------ 215 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIKA------ 215 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCcccccc------
Confidence 36899999876 5999999999999999999764 23667778899999999977654441
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
+++.++.++||....
T Consensus 216 ----d~vk~gavVIDVGin 230 (283)
T COG0190 216 ----DMVKPGAVVIDVGIN 230 (283)
T ss_pred ----ccccCCCEEEecCCc
Confidence 345689999997743
No 373
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.12 E-value=0.03 Score=53.08 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=69.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc------------------cchhHHhc-CCcccCCHHHhhcCCCEEE
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS------------------KAQPLLDI-GAHLADSPHSLASQSDVVF 110 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~------------------~~~~~~~~-g~~~~~~~~~~~~~~DiIi 110 (351)
.||+|=|.|++|...++.|.+.|..|+.++-+.. +.+.+.+. |.+..++.+-...+||+.+
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~ 287 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI 287 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence 6899999999999999999999999998876655 22222222 4444444333345799888
Q ss_pred EecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 111 SIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 111 ~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
-|.-...-..+-+. ++ +-++|+...|+ |.+.+ ..+.+.++|+.|+..
T Consensus 288 PcA~~n~I~~~na~----~l-----~ak~V~EgAN~-P~t~e-A~~i~~erGIl~~PD 334 (411)
T COG0334 288 PCALENVITEDNAD----QL-----KAKIVVEGANG-PTTPE-ADEILLERGILVVPD 334 (411)
T ss_pred ccccccccchhhHH----Hh-----hhcEEEeccCC-CCCHH-HHHHHHHCCCEEcCh
Confidence 77733332233332 22 23388988887 55443 334444788888754
No 374
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.11 E-value=0.013 Score=42.60 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=32.0
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA 85 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~ 85 (351)
||.|||.|..|.-+|..|.+.|.+|+++.+++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999986543
No 375
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.10 E-value=0.014 Score=57.51 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=71.5
Q ss_pred CCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCcc-cchhHHhcCCccc-CCHHHhhcCCCEEEEecC--C-hhHHHHH
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLA-DSPHSLASQSDVVFSIVG--Y-PSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~-~~~~~~~~~~DiIi~~vp--~-~~~~~~v 122 (351)
.+||.|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+... ....+.+.++|+||..-. + ...+..+
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a 86 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAA 86 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHH
Confidence 468999999999999 89999999999999997643 2334555576553 223344567898877542 1 1223322
Q ss_pred hhCCC-----CCcccCC--CCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 123 LLHPS-----SGALSGL--RPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 123 ~~~~~-----~~i~~~l--~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
..... .++...+ ....+-|.-|+|...++.-+...+...|
T Consensus 87 ~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 87 RELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 22100 0111112 2245778888887777777777776555
No 376
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.07 E-value=0.025 Score=51.46 Aligned_cols=72 Identities=25% Similarity=0.411 Sum_probs=57.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||- ..+|..++..|.+.|..|+++... +.++.+..+++|+||++++++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------------T~dl~~~~k~ADIvIsAvGkp~~i~~------- 217 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNFITA------- 217 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHhhhcCEEEEccCCcCcCCH-------
Confidence 68999987 557999999999999999999753 23566678899999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 218 ---~~vk~gavVIDvGi 231 (282)
T PRK14180 218 ---DMVKEGAVVIDVGI 231 (282)
T ss_pred ---HHcCCCcEEEEecc
Confidence 23468999999874
No 377
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.07 E-value=0.0087 Score=54.69 Aligned_cols=65 Identities=15% Similarity=0.028 Sum_probs=44.8
Q ss_pred eEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcC----CcccCCHHHhh------cC-CCEEEEecCC
Q 018694 51 RIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIG----AHLADSPHSLA------SQ-SDVVFSIVGY 115 (351)
Q Consensus 51 kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g----~~~~~~~~~~~------~~-~DiIi~~vp~ 115 (351)
||.|+|+ |.+|+.+++.|.+.|++|.+..|++++........ ..-.+++.+++ .. +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4889977 99999999999999999999999987543211011 11112233444 34 8999988854
No 378
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.05 E-value=0.026 Score=51.42 Aligned_cols=72 Identities=24% Similarity=0.478 Sum_probs=57.1
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
+++.|||-+ -+|..++..|.+.|..|+++... +.++.+...++|+||.+++++..+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~------- 218 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTA------- 218 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCH-------
Confidence 689999875 57999999999999999988742 23577788899999999987764443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 219 ---~~vk~GavVIDvGi 232 (288)
T PRK14171 219 ---EYFNPESIVIDVGI 232 (288)
T ss_pred ---HHcCCCCEEEEeec
Confidence 23468999999873
No 379
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.04 E-value=0.012 Score=55.38 Aligned_cols=65 Identities=15% Similarity=0.338 Sum_probs=44.5
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhc-CCcc-----c---CCHHHhhcCCCEEEEec
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-GAHL-----A---DSPHSLASQSDVVFSIV 113 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-g~~~-----~---~~~~~~~~~~DiIi~~v 113 (351)
||||.|.|+ |.+|+.++..|.+. |++|++++|+.+....+... ++.. . ....++++++|+||-|.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 589999986 99999999999876 69999999876543333221 2211 1 11234556889988653
No 380
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.03 E-value=0.04 Score=52.23 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=30.5
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 689999999999999999999998 699999874
No 381
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.02 E-value=0.012 Score=50.09 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=43.6
Q ss_pred eEEEEccChhhHHH--HHHHHHC----CCeEEEEeCCcccchhHHh--------cC----CcccCCHHHhhcCCCEEEEe
Q 018694 51 RIGWIGTGVMGRSM--CAHLLNA----GYTVTVFNRTLSKAQPLLD--------IG----AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 51 kI~iIG~G~mG~~i--a~~L~~~----g~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi~~ 112 (351)
||+|||+|+.-... ...+... +.+|.++|+++++++.... .| +..++|.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 79999999987662 2223321 2389999999988754322 12 44588999999999999999
Q ss_pred cCC
Q 018694 113 VGY 115 (351)
Q Consensus 113 vp~ 115 (351)
+..
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 843
No 382
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.01 E-value=0.058 Score=47.83 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=65.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCCh--
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYP-- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~-- 116 (351)
.||.|+|+|.+|+.+++.|++.|. +++++|.+.=....+..+ |-....-..+.+. ++++-+.+....
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~ 91 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLT 91 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecC
Confidence 579999999999999999999998 799998764322222211 1111111111111 345555554221
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCCC
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSGG 173 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~~ 173 (351)
......+. .+-.+||++.-. ......+.+.+...++.++.+.-.|+
T Consensus 92 ~~~~~~l~~----------~~~D~VvdaiD~-~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 92 PDNSEDLLG----------GDPDFVVDAIDS-IRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred HhHHHHHhc----------CCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 12222221 134578877554 44445677777777888887744444
No 383
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.99 E-value=0.033 Score=52.63 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=51.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeC---CcccchhHHhcCCcccCCHHH------hhcCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNR---TLSKAQPLLDIGAHLADSPHS------LASQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr---~~~~~~~~~~~g~~~~~~~~~------~~~~~DiIi~~vp~~~~~~ 120 (351)
.+|.|+|+|.+|...++.+...|.+|+++++ ++++.+.+.+.|.......++ .....|+||-|+..+..+.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 253 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAF 253 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHH
Confidence 5799999999999999988889999999988 566766666656543221111 1134688888885444444
Q ss_pred HHhh
Q 018694 121 HVLL 124 (351)
Q Consensus 121 ~v~~ 124 (351)
..+.
T Consensus 254 ~~~~ 257 (355)
T cd08230 254 EALP 257 (355)
T ss_pred HHHH
Confidence 4443
No 384
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.98 E-value=0.042 Score=54.15 Aligned_cols=35 Identities=37% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
...||.|||.|..|...|..|++.|++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 34789999999999999999999999999998875
No 385
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=95.98 E-value=0.028 Score=49.72 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=57.4
Q ss_pred EEEEeCCcccchhHHhc-CCcccCCHHHhh-cCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCC---Chh
Q 018694 75 VTVFNRTLSKAQPLLDI-GAHLADSPHSLA-SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTS---EPS 149 (351)
Q Consensus 75 V~~~dr~~~~~~~~~~~-g~~~~~~~~~~~-~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~---~~~ 149 (351)
+.+||+++++.+.+.++ |...+++.++++ .+.|+|++|+|...+.+.... . +..|+-++-.+.+ ...
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~-----a---L~aGkhVl~~s~gAlad~e 76 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEK-----I---LKNGKDLLIMSVGALADRE 76 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHH-----H---HHCCCCEEEECCcccCCHH
Confidence 55889999988887765 677889999986 579999999966655554443 2 2345444444443 345
Q ss_pred HHHHHHHHHhcCCCcEE
Q 018694 150 LASELSAAASSKNCSAI 166 (351)
Q Consensus 150 ~~~~l~~~~~~~~~~~v 166 (351)
..+++.+...+.|..+.
T Consensus 77 ~~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 77 LRERLREVARSSGRKVY 93 (229)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 66777777776666554
No 386
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.96 E-value=0.03 Score=51.31 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=57.7
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|||-+ .+|..++..|.+.|..|+++... +.++++.++++|+||.|++++.-+..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~~------- 226 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIKG------- 226 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-------
Confidence 689999875 56999999999999999999642 23677888999999999977643332
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 227 ---~~vk~gavVIDvGin 241 (299)
T PLN02516 227 ---DWIKPGAAVIDVGTN 241 (299)
T ss_pred ---HHcCCCCEEEEeecc
Confidence 345799999998743
No 387
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.016 Score=54.10 Aligned_cols=61 Identities=25% Similarity=0.348 Sum_probs=44.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccch-hHHhcCCcc-cC---CHHHhhcCCCEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-PLLDIGAHL-AD---SPHSLASQSDVV 109 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-~~~~~g~~~-~~---~~~~~~~~~DiI 109 (351)
|++|||||.|.+|..|+..-..-|+.|.+.|.+++.-. ++.+.-+.. ++ .+.++++.||+|
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEE
Confidence 47899999999999999999999999999998866432 222222222 22 345667788877
No 388
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.96 E-value=0.03 Score=51.22 Aligned_cols=72 Identities=25% Similarity=0.436 Sum_probs=57.4
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||-+ -+|..++..|.+.|..|++++.. +.++.+.++++|+||.+++++..+..-
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~~------ 220 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVKYS------ 220 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCHH------
Confidence 689999874 57999999999999999998753 235677789999999999877654432
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
++.+|.++||+..
T Consensus 221 ----~ik~gaiVIDVGi 233 (294)
T PRK14187 221 ----WIKKGAIVIDVGI 233 (294)
T ss_pred ----HcCCCCEEEEecc
Confidence 3468999999774
No 389
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.96 E-value=0.044 Score=51.57 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=38.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAH 94 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~ 94 (351)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 579999999999999998888898 588899999888877776653
No 390
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.94 E-value=0.033 Score=49.53 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=29.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
||.|||+|.+|+.+++.|+..|+ +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999998 688998874
No 391
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.94 E-value=0.011 Score=57.21 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=31.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|.+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4689999999999999999999999999999975
No 392
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.92 E-value=0.031 Score=50.92 Aligned_cols=73 Identities=22% Similarity=0.414 Sum_probs=57.2
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-.+|.|||- ..+|..++..|.+.|..|++++.. +.++.+.++++|+||.+++++.-+..
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~~------ 217 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLITA------ 217 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCCH------
Confidence 368999987 567999999999999999998642 23677788999999999977663322
Q ss_pred CCcccCCCCCcEEEecCC
Q 018694 128 SGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|+++||++.
T Consensus 218 ----~~ik~gavVIDvGi 231 (284)
T PRK14190 218 ----DMVKEGAVVIDVGV 231 (284)
T ss_pred ----HHcCCCCEEEEeec
Confidence 23568999999874
No 393
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.92 E-value=0.033 Score=50.73 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=57.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHH--CCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLN--AGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~--~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~ 126 (351)
.++.|||- ..+|..++..|.+ .+..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~----- 219 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTA----- 219 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCH-----
Confidence 68999987 5679999999988 68899988653 24677888999999999987764332
Q ss_pred CCCcccCCCCCcEEEecCCC
Q 018694 127 SSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 127 ~~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 220 -----~~ik~GavVIDvGin 234 (284)
T PRK14193 220 -----DMVKPGAAVLDVGVS 234 (284)
T ss_pred -----HHcCCCCEEEEcccc
Confidence 245689999998743
No 394
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.92 E-value=0.19 Score=49.48 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CC-----CCccc
Q 018694 215 GQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKR-DF-----EPGFF 281 (351)
Q Consensus 215 a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~-----~~~~~ 281 (351)
...+|.+.|.+....+.+++|.+.+.++ .++++.++.++.+.+. ..++.++...+.+.+. +. .+.|.
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 391 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 7889999999999999999999997666 6899999999998886 5677776655544332 11 11121
Q ss_pred --hhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 282 --VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 282 --~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
+......++.++..+-+.|+|+|.+.+....+.+.+.. .-...+++..|...|
T Consensus 392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~----~~~~nliqaqRd~FG 446 (467)
T TIGR00873 392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA----RLPANLLQAQRDYFG 446 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----cccHHHHHHHHHHhc
Confidence 22333445788999999999999999988888887752 233457777776654
No 395
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.90 E-value=0.029 Score=51.38 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=28.1
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
||.|||+|.+|..+++.|+..|. +++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 68888765
No 396
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.90 E-value=0.066 Score=52.47 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHh--cCCcccC--CHHHhhcCCCEEEEecC--C-hhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLD--IGAHLAD--SPHSLASQSDVVFSIVG--Y-PSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~--~g~~~~~--~~~~~~~~~DiIi~~vp--~-~~~~~ 120 (351)
-.|.|||.|..|.++|+.|.+.|++|+++|..+.. .+.+.+ .|+.... ...+.+.++|+||..-. + ...+.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALR 86 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHH
Confidence 46999999999999999999999999999976432 233444 2655532 23344567898766431 1 12232
Q ss_pred HHhhCCC-----CCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 121 HVLLHPS-----SGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 121 ~v~~~~~-----~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
..-.... .++. ..+....+-|.-++|...++.-+...+...|..+..+.+.
T Consensus 87 ~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni 143 (448)
T PRK03803 87 AAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI 143 (448)
T ss_pred HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc
Confidence 2221100 0111 1123345677777787777777777776666555444333
No 397
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.89 E-value=0.021 Score=52.79 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchh---HHhc------------CCcccCCHHHhhcCCCEEEE
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQP---LLDI------------GAHLADSPHSLASQSDVVFS 111 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~---~~~~------------g~~~~~~~~~~~~~~DiIi~ 111 (351)
++++|+|-|+ |.+|+.+.+.|.++||.|...-|+++.-+. +.+. .+.-..+.+++++.||.||-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 4589999976 999999999999999999999999876222 2221 23445677889999999987
Q ss_pred ec
Q 018694 112 IV 113 (351)
Q Consensus 112 ~v 113 (351)
+.
T Consensus 85 ~A 86 (327)
T KOG1502|consen 85 TA 86 (327)
T ss_pred eC
Confidence 76
No 398
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.032 Score=53.59 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=48.2
Q ss_pred CCeEEEEccChhhHH-HHHHHHH-----CCCeEEEEeCCcccchhH-------Hhc-C----CcccCCHHHhhcCCCEEE
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLN-----AGYTVTVFNRTLSKAQPL-------LDI-G----AHLADSPHSLASQSDVVF 110 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~-----~g~~V~~~dr~~~~~~~~-------~~~-g----~~~~~~~~~~~~~~DiIi 110 (351)
++||+|||.|+.+.. +...+.. .+.++.++|.++++.+.. .++ | +..++|.++++.++|+|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEE
Confidence 478999999998876 3333332 244899999998876532 211 3 456889999999999999
Q ss_pred Eec
Q 018694 111 SIV 113 (351)
Q Consensus 111 ~~v 113 (351)
.+.
T Consensus 83 ~~~ 85 (442)
T COG1486 83 TQI 85 (442)
T ss_pred EEE
Confidence 998
No 399
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.85 E-value=0.16 Score=46.12 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=63.8
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCCh--
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYP-- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~-- 116 (351)
.+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |-..+.-..+.+. ++++-+.+.+..
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~ 110 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFIT 110 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccC
Confidence 579999999999999999999995 799998774332222221 1100111111111 345555555221
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCCC
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
....+.+. .+-++||++.-. +.....+.+.+...++.++.+.-.+
T Consensus 111 ~e~~~~ll~----------~~~D~VIdaiD~-~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 111 PDNVAEYMS----------AGFSYVIDAIDS-VRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred hhhHHHHhc----------CCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEECCcc
Confidence 12222221 134577776543 4444567777777788888663333
No 400
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.83 E-value=0.04 Score=50.10 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=57.3
Q ss_pred CCeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCC
Q 018694 49 NTRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPS 127 (351)
Q Consensus 49 ~~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~ 127 (351)
-+++.|||-+ -+|..++..|.+.|..|+++... +.++.+..+++|+||.+++++.-+..
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~~------ 216 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVKG------ 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH------
Confidence 3689999874 57999999999999999998642 23567778899999999987654432
Q ss_pred CCcccCCCCCcEEEecCCC
Q 018694 128 SGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 128 ~~i~~~l~~~~~ii~~s~~ 146 (351)
.++++|.++||++..
T Consensus 217 ----~~ik~gaiVIDvGin 231 (282)
T PRK14182 217 ----AWVKEGAVVIDVGMN 231 (282)
T ss_pred ----HHcCCCCEEEEeece
Confidence 235689999998743
No 401
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.83 E-value=0.018 Score=54.86 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCCCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccc-hhH--Hhc----CCcccCCHHHhhcCCCEEEEec
Q 018694 44 PVCPTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPL--LDI----GAHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 44 ~~~~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~--~~~----g~~~~~~~~~~~~~~DiIi~~v 113 (351)
.+.+..|||.|.|. |.+|..+++.|.+.|++|++++|..... ... ... .+.-..+...++.++|+||-+.
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 34445589999976 9999999999999999999999864321 100 000 1111112233456789998887
No 402
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.81 E-value=0.03 Score=51.84 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=29.2
Q ss_pred eEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
||.|||+|.+|..+++.|+..|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 68999999999999999999998 699998764
No 403
>PRK06813 homoserine dehydrogenase; Validated
Probab=95.80 E-value=0.023 Score=53.45 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=59.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--------CCeEE---EEeCCcccch-------hHHhc--CCc-----ccCCHHHhh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--------GYTVT---VFNRTLSKAQ-------PLLDI--GAH-----LADSPHSLA 103 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--------g~~V~---~~dr~~~~~~-------~~~~~--g~~-----~~~~~~~~~ 103 (351)
+++|+++|+|.+|..+++.|.++ |.++. +.+++..... .+.+. +.. ...+.++..
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 47899999999999999998653 44433 3355433222 11100 000 111222222
Q ss_pred -c--CCCEEEEecCCh----hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEE
Q 018694 104 -S--QSDVVFSIVGYP----SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAI 166 (351)
Q Consensus 104 -~--~~DiIi~~vp~~----~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v 166 (351)
. +.|+||-|+|.. ....+.+ ..++..|..||..++.. .....++.+...+.++.|.
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~-------~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYI-------KQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHH-------HHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 2 479999998543 1122222 23455777788666532 1223455555555666654
No 404
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.79 E-value=0.045 Score=49.91 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=49.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcCCcccCCH---HHhh------cCCCEEEEecCChhHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIGAHLADSP---HSLA------SQSDVVFSIVGYPSDV 119 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g~~~~~~~---~~~~------~~~DiIi~~vp~~~~~ 119 (351)
.+|.|+|+|.+|...++.+...|.. |++.++++++.+...+.|....-+. .+.+ ...|++|-|+..+..+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~ 201 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAV 201 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHH
Confidence 5799999999999999988888986 8888888888776666665322111 1111 1356777766444444
Q ss_pred HHHhh
Q 018694 120 RHVLL 124 (351)
Q Consensus 120 ~~v~~ 124 (351)
...+.
T Consensus 202 ~~~~~ 206 (280)
T TIGR03366 202 RACLE 206 (280)
T ss_pred HHHHH
Confidence 44443
No 405
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=95.74 E-value=0.33 Score=39.09 Aligned_cols=126 Identities=15% Similarity=0.070 Sum_probs=75.8
Q ss_pred EEecCCHHHHHHHHHHHHhhCc-eEEcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCch
Q 018694 184 IFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSK 262 (351)
Q Consensus 184 ~~~~g~~~~~~~v~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~ 262 (351)
+.+.|+++..+.++++++.+|. ++.+.+ ..-.....+..+..+....++..+..++++.|++.++..+++..
T Consensus 4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~-~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~P------ 76 (132)
T PF10728_consen 4 FAIEGDEEALEVLQELAKELGGRPFEIDS-EQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLP------ 76 (132)
T ss_dssp EEEEESHHHHHHHHHHHHHTTSEEEE--G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHH------
T ss_pred EEEecCHHHHHHHHHHHHHhCCceEEeCH-HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHH------
Confidence 4445599999999999999999 776654 44445566777777777788888999999999999776555432
Q ss_pred hhhhhhhhcccCCCCCccchhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018694 263 SLDLHGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSL 316 (351)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~ 316 (351)
.+......+.+.......+-...+.|.+.+.+..+...-..|-...+|+.+.+.
T Consensus 77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~~ 130 (132)
T PF10728_consen 77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSRA 130 (132)
T ss_dssp HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 222222222221111111222235677777777776444336677777776654
No 406
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.72 E-value=0.018 Score=53.46 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=45.4
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc-------cCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL-------ADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~~DiIi~~v 113 (351)
|||.|.| +|.+|..++..|.+.|++|++++|+++....+...++.. ..+..+++..+|+||.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5799997 599999999999999999999999876543332222211 112344556778888776
No 407
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.71 E-value=0.068 Score=51.41 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 589999999999999999999998 699998764
No 408
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.70 E-value=0.04 Score=51.55 Aligned_cols=72 Identities=26% Similarity=0.510 Sum_probs=57.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||- .-+|..++..|.+.|..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~~------- 290 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVRG------- 290 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCCH-------
Confidence 68999987 557999999999999999998642 24677888999999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
+++++|.+|||+..
T Consensus 291 ---d~vK~GAvVIDVGI 304 (364)
T PLN02616 291 ---SWIKPGAVVIDVGI 304 (364)
T ss_pred ---HHcCCCCEEEeccc
Confidence 23569999999774
No 409
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.68 E-value=0.044 Score=48.36 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
+++|.|.|+ |.+|..+++.|.+.|++|++++|++++.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~ 44 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEA 44 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHH
Confidence 367989975 999999999999999999999999766544
No 410
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.66 E-value=0.16 Score=46.90 Aligned_cols=111 Identities=20% Similarity=0.144 Sum_probs=72.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhH---HHHHhhCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSD---VRHVLLHP 126 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~---~~~v~~~~ 126 (351)
.+|+|||.-.=-..+++.|.+.|++|.++.-+.+. ....|+...++.++++.++|+|+..+|...+ +...+...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 58999999999999999999999999997654322 2234788888888989999999999864321 11110000
Q ss_pred ----CCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 127 ----SSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 127 ----~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
..+....++++.+++ .+...+.. .+.+.++++.+++.
T Consensus 80 ~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~ 120 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVEL 120 (296)
T ss_pred CCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEE
Confidence 002334566776555 35554542 24445677777654
No 411
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.63 E-value=0.05 Score=49.59 Aligned_cols=72 Identities=19% Similarity=0.454 Sum_probs=56.4
Q ss_pred CeEEEEccC-hhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+++.|||-+ .+|..++..|.+. +..|+++... +.++.+.++++|+||.+++++.-+..
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~~--- 216 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIKE--- 216 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH---
Confidence 689999875 5799999999988 6789988642 23677778999999999987754332
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|+++||+..
T Consensus 217 -------~~ik~GavVIDvGi 230 (287)
T PRK14181 217 -------EMIAEKAVIVDVGT 230 (287)
T ss_pred -------HHcCCCCEEEEecc
Confidence 24569999999874
No 412
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.63 E-value=0.024 Score=52.57 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=63.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHH-HHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVR-HVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~-~v~~~~~~ 128 (351)
+++.|.|+|-.|..+|..+...|.+|.++..+|=++-+..=.|..+. +.++++...|++|.|+..-..+. +-+.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkdVi~~eh~~---- 284 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKDVIRKEHFE---- 284 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcCccCHHHHH----
Confidence 46778899999999999999999999999998855444444477765 67888889999999995433221 1221
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.++++.++.+..
T Consensus 285 ----~MkDgaIl~N~G 296 (420)
T COG0499 285 ----KMKDGAILANAG 296 (420)
T ss_pred ----hccCCeEEeccc
Confidence 345677776655
No 413
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.62 E-value=0.047 Score=50.86 Aligned_cols=72 Identities=28% Similarity=0.477 Sum_probs=57.1
Q ss_pred CeEEEEccC-hhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
++|.|||-+ -+|..++..|.+.|..|+++... +.++.+..+++|+||.+++++.-+..
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~~------- 273 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVRG------- 273 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 689999875 57999999999999999988642 23567788999999999987765443
Q ss_pred CcccCCCCCcEEEecCC
Q 018694 129 GALSGLRPGGIIVDMTT 145 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.+|||++.
T Consensus 274 ---d~vk~GavVIDVGi 287 (345)
T PLN02897 274 ---SWLKPGAVVIDVGT 287 (345)
T ss_pred ---HHcCCCCEEEEccc
Confidence 23468999999874
No 414
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.61 E-value=0.052 Score=49.57 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=59.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhcCCcccCCHH-------Hhh-----cCCCEEEEecCCh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDIGAHLADSPH-------SLA-----SQSDVVFSIVGYP 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~g~~~~~~~~-------~~~-----~~~DiIi~~vp~~ 116 (351)
..++|+|+|.+|.+.+..-..+|. +++.+|.|+++.+..++.|++-.-++. |.+ ...|+-|.|+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence 579999999999999999988887 799999999999988888765433333 222 1478888888777
Q ss_pred hHHHHHhh
Q 018694 117 SDVRHVLL 124 (351)
Q Consensus 117 ~~~~~v~~ 124 (351)
+..++.+.
T Consensus 274 ~~m~~al~ 281 (375)
T KOG0022|consen 274 STMRAALE 281 (375)
T ss_pred HHHHHHHH
Confidence 77777666
No 415
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.60 E-value=0.1 Score=45.90 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=50.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc-cchhHHhcC-Cccc---CCHHHhhcCCCEEEEecCChhHHHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS-KAQPLLDIG-AHLA---DSPHSLASQSDVVFSIVGYPSDVRHVL 123 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~-~~~~~~~~g-~~~~---~~~~~~~~~~DiIi~~vp~~~~~~~v~ 123 (351)
.++|.|||.|.++..=+..|.+.|.+|+++...-. .+..+...| +... -.. +.+..+++||.|+ +...+...+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaAT-dD~~vN~~I 102 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIAT-DDEKLNNKI 102 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECC-CCHHHHHHH
Confidence 36899999999999999999999999999976532 233343332 2211 122 3357899999999 555554433
Q ss_pred h
Q 018694 124 L 124 (351)
Q Consensus 124 ~ 124 (351)
.
T Consensus 103 ~ 103 (223)
T PRK05562 103 R 103 (223)
T ss_pred H
Confidence 3
No 416
>PRK14852 hypothetical protein; Provisional
Probab=95.58 E-value=0.061 Score=56.71 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=64.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCChh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYPS 117 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~~ 117 (351)
..||+|||+|.+|+.++..|+..|. +++++|-+.=....+..+ |-..+....+.+. ++++-|.+.+...
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I 411 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGV 411 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 3689999999999999999999998 688888764333223222 2111111222222 4455555552211
Q ss_pred HHHHHhhCCCCCcccCCCCCcEEEecCCCCh-hHHHHHHHHHhcCCCcEEeccCCC
Q 018694 118 DVRHVLLHPSSGALSGLRPGGIIVDMTTSEP-SLASELSAAASSKNCSAIDAPVSG 172 (351)
Q Consensus 118 ~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~-~~~~~l~~~~~~~~~~~v~~pv~~ 172 (351)
.++.+. ++ +..-.+||++..... .....+.+.+...++.++.+.+.|
T Consensus 412 -~~en~~----~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 412 -AAETID----AF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CHHHHH----HH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 111122 22 224457888775422 222345555555677777665443
No 417
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.57 E-value=0.081 Score=48.43 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~ 82 (351)
.||.|+|+|.+|..++++|+.+|. .|+++|.+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 579999999999999999999998 699999764
No 418
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.55 E-value=0.097 Score=51.39 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=66.9
Q ss_pred eEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc-ch----hHHhcCCcccC--CHH-----HhhcCCCEEEEecCChh-
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK-AQ----PLLDIGAHLAD--SPH-----SLASQSDVVFSIVGYPS- 117 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~-~~----~~~~~g~~~~~--~~~-----~~~~~~DiIi~~vp~~~- 117 (351)
||.|||.|..|.+.|..|.+.|++|+++|+.+.. .+ .+...|+.... ..+ +...++|+||..-.-+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 6999999999999999999999999999976432 22 24445655422 111 24567898887442222
Q ss_pred --HHHHHhhCCCCCcc-------cCC-CCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 118 --DVRHVLLHPSSGAL-------SGL-RPGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 118 --~~~~v~~~~~~~i~-------~~l-~~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
.+..+-.... .+. ... ....+-|.-|+|...++.-+...+...|.
T Consensus 82 ~~~~~~a~~~~i-~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~ 136 (459)
T PRK02705 82 HPTLVELRERGI-EVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGL 136 (459)
T ss_pred CHHHHHHHHcCC-cEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 2222211100 111 111 22346777777877777766666655443
No 419
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.53 E-value=0.051 Score=55.90 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=32.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+||+|||+|..|...|..|++.|++|+++++++.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999998753
No 420
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.52 E-value=0.033 Score=53.20 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=44.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccc-hhHHhcCC-cccCC---HHHhhcCCCEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGA-HLADS---PHSLASQSDVVFS 111 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~-~~~~~~g~-~~~~~---~~~~~~~~DiIi~ 111 (351)
|++|+|||.|..|..++....+.|++|+++|.+++.. ..+.+.-+ ....+ +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 5789999999999999999999999999999876542 22222211 11233 3455678897744
No 421
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.51 E-value=0.29 Score=48.03 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-CCchhhhhhhhhcccC-CC-----CCccc
Q 018694 215 GQFAKLANQITIATTMVGLVEGMVYAHK------AGLNVELFLNAISTGA-AGSKSLDLHGSRILKR-DF-----EPGFF 281 (351)
Q Consensus 215 a~~~kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~-----~~~~~ 281 (351)
+.++|.+.|.+....+.+++|.+.+.++ .++++.++.++.+.+. ..++.++...+.+.+. +. .+.|.
T Consensus 304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~ 383 (459)
T PRK09287 304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFK 383 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHH
Confidence 7889999999999999999999997665 4588899999998886 5677776655544332 11 11121
Q ss_pred --hhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhcC
Q 018694 282 --VNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNN 338 (351)
Q Consensus 282 --~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~l~~~~~~~g~~~~d~~~~~~~~~~~~~ 338 (351)
+.......+.++..+-+.|+|+|.+.+....+...+.. .-...+++..|...|
T Consensus 384 ~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~----~~~anliqaqRd~FG 438 (459)
T PRK09287 384 DILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA----RLPANLIQAQRDYFG 438 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHHHhHhC
Confidence 22223334688999999999999998888666665533 223457777776664
No 422
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.50 E-value=0.03 Score=54.17 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=47.0
Q ss_pred CeEEEEccChhhH-HHHHHHHHC-----CCeEEEEeCC-cccchhHHh--------cC----CcccCCHHHhhcCCCEEE
Q 018694 50 TRIGWIGTGVMGR-SMCAHLLNA-----GYTVTVFNRT-LSKAQPLLD--------IG----AHLADSPHSLASQSDVVF 110 (351)
Q Consensus 50 ~kI~iIG~G~mG~-~ia~~L~~~-----g~~V~~~dr~-~~~~~~~~~--------~g----~~~~~~~~~~~~~~DiIi 110 (351)
|||+|||+|+.-+ .+...|... +-+|+++|++ +++++.... .| +..+++.++++.++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6999999999744 355555542 2489999999 777644211 12 455779999999999999
Q ss_pred Eec
Q 018694 111 SIV 113 (351)
Q Consensus 111 ~~v 113 (351)
++.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 998
No 423
>PRK07411 hypothetical protein; Validated
Probab=95.49 E-value=0.08 Score=50.86 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=29.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRT 81 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~ 81 (351)
.||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 68888876
No 424
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.47 E-value=0.022 Score=54.76 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=33.5
Q ss_pred CCCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 47 PTNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 47 ~~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
+.+|||.|+|. |.+|..+++.|.+.|++|++++|+...
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 34689999975 999999999999999999999998754
No 425
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.46 E-value=0.058 Score=52.24 Aligned_cols=111 Identities=9% Similarity=0.014 Sum_probs=69.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEE--------Ee---CCcccch---hHHhc-------------CCcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTV--------FN---RTLSKAQ---PLLDI-------------GAHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~--------~d---r~~~~~~---~~~~~-------------g~~~~~~~~~ 101 (351)
..||+|-|.|++|...|+.|.+.|..|+. || .+.++++ ..++. |....+ .++
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~ 306 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKK 306 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-Ccc
Confidence 36899999999999999999999999887 66 4444321 11111 122222 223
Q ss_pred h-hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 102 L-ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 102 ~-~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
+ ..+||+.+-|--...-..+... .+.. .+-++|+...|+ |.+. +-.+.+.++|+.|+.-
T Consensus 307 ~~~~~cDVliPcAl~n~I~~~na~----~l~~--~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vPD 366 (445)
T PRK14030 307 PWEQKVDIALPCATQNELNGEDAD----KLIK--NGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAPG 366 (445)
T ss_pred ceeccccEEeeccccccCCHHHHH----HHHH--cCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeCc
Confidence 2 2479998888733332222222 2211 145688999998 6554 4556677789888854
No 426
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.43 E-value=0.049 Score=48.90 Aligned_cols=61 Identities=31% Similarity=0.469 Sum_probs=46.6
Q ss_pred ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc-CCCEEEEecCCh
Q 018694 56 GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS-QSDVVFSIVGYP 116 (351)
Q Consensus 56 G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~~DiIi~~vp~~ 116 (351)
|.|-+|+++...|.+.||+|++..|++.+.+......+...+..++... ++|+||--..++
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~ 67 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP 67 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence 7899999999999999999999999987766544433444445555555 699999877444
No 427
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.43 E-value=0.21 Score=48.79 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHC--CCeEEEEeCCccc--chhHHhcCCccc-C-CHHHhhcCCCEEEEecC--C-hhHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNA--GYTVTVFNRTLSK--AQPLLDIGAHLA-D-SPHSLASQSDVVFSIVG--Y-PSDV 119 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~--g~~V~~~dr~~~~--~~~~~~~g~~~~-~-~~~~~~~~~DiIi~~vp--~-~~~~ 119 (351)
++||.|||.|..|.+-+..|... |++|+++|..+.. .+.+.+ |+... . ...+.+.++|+||..-. + ...+
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~ 85 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEI 85 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHH
Confidence 36899999999999999999887 5889999976432 123433 66552 1 12344577897776542 1 1223
Q ss_pred HHHhhCCC-----CCcc-cCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 120 RHVLLHPS-----SGAL-SGLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 120 ~~v~~~~~-----~~i~-~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
........ .++. ..+....+-|.-|+|...++.-+...+...+..+
T Consensus 86 ~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 86 QQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 22221100 0111 1123345677777887777776777776555443
No 428
>PRK14851 hypothetical protein; Provisional
Probab=95.41 E-value=0.097 Score=53.74 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=62.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCC-eEEEEeCCcccchhHHhc--------CCcccCCHHHhhc--CCCEEEEecCCh--
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGY-TVTVFNRTLSKAQPLLDI--------GAHLADSPHSLAS--QSDVVFSIVGYP-- 116 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~-~V~~~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--~~DiIi~~vp~~-- 116 (351)
.||+|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |-..+.-..+.+. ++++-|.+.+..
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~ 123 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGIN 123 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999999998 688888764222222222 2111111112111 345555554222
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCCCC-hhHHHHHHHHHhcCCCcEEeccCC
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTTSE-PSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~-~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
..+.+++ ..-++|||+.... ...-..+.+.....++.++.+...
T Consensus 124 ~~n~~~~l-----------~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~ 169 (679)
T PRK14851 124 ADNMDAFL-----------DGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPL 169 (679)
T ss_pred hHHHHHHH-----------hCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecc
Confidence 2222222 2445788877542 222335565666677878776443
No 429
>PRK05868 hypothetical protein; Validated
Probab=95.40 E-value=0.022 Score=54.43 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
|++|.|||.|..|.+.|..|++.|++|+++++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 679999999999999999999999999999988653
No 430
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.36 E-value=0.067 Score=49.03 Aligned_cols=72 Identities=17% Similarity=0.409 Sum_probs=56.0
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.|||- ..+|..++..|.+. +..|+++... +.++.+.++++|+||.+++++.-+..
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~--- 224 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVKP--- 224 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccCH---
Confidence 68999987 56799999999987 6789988542 23677788999999999977664432
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 225 -------~~ik~gavVIDvGi 238 (297)
T PRK14168 225 -------EWIKPGATVIDVGV 238 (297)
T ss_pred -------HHcCCCCEEEecCC
Confidence 23568999999874
No 431
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.33 E-value=0.077 Score=47.86 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=37.3
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI 91 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~ 91 (351)
++++.|-|+ +.+|..+|+.|+++|++|+++.|+.++++.++++
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 345666676 9999999999999999999999999998887654
No 432
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.33 E-value=0.068 Score=48.85 Aligned_cols=73 Identities=19% Similarity=0.427 Sum_probs=56.3
Q ss_pred CeEEEEccC-hhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
++|.|||-+ -+|..++..|.+. +..|+++... +.++.+.++++|+||.+++++..+..
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~~--- 220 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------------SKNLKKECLEADIIIAALGQPEFVKA--- 220 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------------CCCHHHHHhhCCEEEEccCCcCccCH---
Confidence 689999875 5699999999987 5688888542 23677788899999999987765442
Q ss_pred CCCCCcccCCCCCcEEEecCCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~ 146 (351)
+.+++|.++||++..
T Consensus 221 -------~~vk~gavVIDvGin 235 (293)
T PRK14185 221 -------DMVKEGAVVIDVGTT 235 (293)
T ss_pred -------HHcCCCCEEEEecCc
Confidence 235689999998743
No 433
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.31 E-value=0.092 Score=50.66 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=63.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhh--cCCCEEEEec--CCh-hHH---HH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLA--SQSDVVFSIV--GYP-SDV---RH 121 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~--~~~DiIi~~v--p~~-~~~---~~ 121 (351)
|||.|+|.|.-|.+.|+.|. .|++|+++|..+.... ..+.|+... . ++.. +++|+||..- |+. ..+ ++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 68999999999999999999 9999999996543221 222355543 2 2223 4688776642 221 112 22
Q ss_pred HhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKN 162 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~ 162 (351)
++... ++...+.+..+-|.-|+|...+..-+...+...+
T Consensus 77 i~~~~--e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 77 LISEY--DYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred HhhHH--HHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 22100 1111112345777777787777766777776544
No 434
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.26 E-value=0.11 Score=46.69 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=67.0
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhc----CCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDI----GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~----g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.-||||. | .++..+.+.|.. |+.+|.++..++..+++ ++...-...+.-...|+|+... ....+..++.
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani-~~~~~~~l~~ 197 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANI-LANPLLELAP 197 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcC-cHHHHHHHHH
Confidence 5799999998 6 445556666664 99999998877655443 3310000000001478887655 5555666776
Q ss_pred CCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEe
Q 018694 125 HPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAID 167 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~ 167 (351)
++...++++..++-. .........+.+.+...|..++.
T Consensus 198 ----~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 198 ----DLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ----HHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence 777778887776643 23244455666666666665553
No 435
>PLN00016 RNA-binding protein; Provisional
Probab=95.26 E-value=0.15 Score=48.69 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.1
Q ss_pred CCCCCeEEEE----c-cChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 46 CPTNTRIGWI----G-TGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 46 ~~~~~kI~iI----G-~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
..+++||.|+ | +|.+|..+++.|.+.||+|++.+|++..
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 3456899999 6 5999999999999999999999998654
No 436
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.24 E-value=0.15 Score=53.84 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=71.0
Q ss_pred CCeEEEEccChhhHHH-HHHHHHCCCeEEEEeCCcc-cchhHHhcCCcccC-CHHHhhcCCCEEEEecC---ChhHHHHH
Q 018694 49 NTRIGWIGTGVMGRSM-CAHLLNAGYTVTVFNRTLS-KAQPLLDIGAHLAD-SPHSLASQSDVVFSIVG---YPSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~i-a~~L~~~g~~V~~~dr~~~-~~~~~~~~g~~~~~-~~~~~~~~~DiIi~~vp---~~~~~~~v 122 (351)
|.+|.|||.|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+||..-. ....+..+
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a 83 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSA 83 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHH
Confidence 3469999999999997 9999999999999997643 33446556765532 23355667898876432 11223322
Q ss_pred hhCCC-----CCcccC-CC-CCcEEEecCCCChhHHHHHHHHHhcCCC
Q 018694 123 LLHPS-----SGALSG-LR-PGGIIVDMTTSEPSLASELSAAASSKNC 163 (351)
Q Consensus 123 ~~~~~-----~~i~~~-l~-~~~~ii~~s~~~~~~~~~l~~~~~~~~~ 163 (351)
..... .++... .. ...+-|.-|+|...++.-+...+...|.
T Consensus 84 ~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 84 KSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred HHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 22100 011111 12 2457787888877777777777765553
No 437
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.21 E-value=0.077 Score=48.65 Aligned_cols=72 Identities=24% Similarity=0.408 Sum_probs=55.9
Q ss_pred CeEEEEccC-hhhHHHHHHHHHC----CCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLNA----GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~~----g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
.+|.|||-+ .+|..++..|.+. +..|+++... +.++.+..+++|+||.++.++.-+..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~--- 220 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------------TDDLAAKTRRADIVVAAAGVPELIDG--- 220 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH---
Confidence 689999874 5799999999877 6789988542 23567788999999999987764432
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||+..
T Consensus 221 -------~~ik~gaiVIDvGi 234 (297)
T PRK14167 221 -------SMLSEGATVIDVGI 234 (297)
T ss_pred -------HHcCCCCEEEEccc
Confidence 24568999999874
No 438
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.20 E-value=0.082 Score=47.11 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=33.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
|+|.|+|+ |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 57889975 9999999999999999999999997765544
No 439
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.18 E-value=0.028 Score=54.27 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=31.3
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
|+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 589999999999999999999999999999974
No 440
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.087 Score=47.89 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=34.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
++|.|.|+ |.+|..+++.|++.|++|++.+|+++..+.+.+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 46777776 999999999999999999999999877666544
No 441
>PLN02427 UDP-apiose/xylose synthase
Probab=95.13 E-value=0.047 Score=52.29 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=45.4
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHC-CCeEEEEeCCcccchhHHhc-------CCcc-------cCCHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNA-GYTVTVFNRTLSKAQPLLDI-------GAHL-------ADSPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~-g~~V~~~dr~~~~~~~~~~~-------g~~~-------~~~~~~~~~~~DiIi~~ 112 (351)
+|||.|.| +|-+|+.+++.|.+. |++|++++|+.++...+... ++.. .....++++++|+||-|
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 37899997 599999999999988 59999999886654433221 1111 11234556678988877
Q ss_pred c
Q 018694 113 V 113 (351)
Q Consensus 113 v 113 (351)
.
T Consensus 94 A 94 (386)
T PLN02427 94 A 94 (386)
T ss_pred c
Confidence 7
No 442
>PRK06753 hypothetical protein; Provisional
Probab=95.12 E-value=0.029 Score=53.30 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=32.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|||.|||+|..|.+.|..|++.|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998865
No 443
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.047 Score=47.98 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=34.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
||+.|.|+ |.+|.++++.|.+.|++|++.+|+.++.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57889976 99999999999999999999999987665544
No 444
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.083 Score=46.73 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
|+++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 457788864 9999999999999999999999997665443
No 445
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.05 E-value=0.061 Score=50.81 Aligned_cols=88 Identities=14% Similarity=0.241 Sum_probs=54.4
Q ss_pred CeEEEEcc-ChhhHHHHHHHH-HCCCe---EEEEe--CCcccchhHHhcCCcccCCHH-HhhcCCCEEEEecCChhHHHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLL-NAGYT---VTVFN--RTLSKAQPLLDIGAHLADSPH-SLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~-~~g~~---V~~~d--r~~~~~~~~~~~g~~~~~~~~-~~~~~~DiIi~~vp~~~~~~~ 121 (351)
+||+|+|+ |.+|..+.+.|. +..++ +.++. ++..+...+..+...+....+ +...+.|++|+|. .....++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~-g~~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQ-GGDYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcC-CHHHHHH
Confidence 47999998 999999999998 66665 33333 222222223222222222212 2467899999999 6666665
Q ss_pred HhhCCCCCcccCCCCC--cEEEecCC
Q 018694 122 VLLHPSSGALSGLRPG--GIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~--~~ii~~s~ 145 (351)
+.. ... ..| .++||.++
T Consensus 80 ~~p----~~~---~aG~~~~VIDnSS 98 (366)
T TIGR01745 80 IYP----KLR---ESGWQGYWIDAAS 98 (366)
T ss_pred HHH----HHH---hCCCCeEEEECCh
Confidence 555 332 366 67998774
No 446
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.04 E-value=0.056 Score=54.02 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=33.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
.+|.|.|+ |.+|..+++.|++.|++|++++|+.++.+.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l 120 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL 120 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 45777765 9999999999999999999999998776554
No 447
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.03 E-value=0.74 Score=41.20 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=64.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEE--------eCCcccchhHHh---c-CC--cccC----------CHH-Hhh-
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVF--------NRTLSKAQPLLD---I-GA--HLAD----------SPH-SLA- 103 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~--------dr~~~~~~~~~~---~-g~--~~~~----------~~~-~~~- 103 (351)
+|+.|-|.|++|...++.|.+.|..|+.+ |.+.-..+.+.+ + +. .... +.+ +++
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~ 112 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILS 112 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccccc
Confidence 68999999999999999999999876654 433323333332 2 22 2111 121 444
Q ss_pred cCCCEEEEecCChhHHHHHhhCCCCCcccCCC-CCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 104 SQSDVVFSIVGYPSDVRHVLLHPSSGALSGLR-PGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 104 ~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~-~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.+||+++-|--...-..+.+. . .+. .-++|+...|. |.+.+... .+.++|+.+++-
T Consensus 113 ~~~DiliP~A~~~~I~~~~~~----~---~i~~~akiIvegAN~-p~t~~a~~-~L~~rGI~viPD 169 (244)
T PF00208_consen 113 VDCDILIPCALGNVINEDNAP----S---LIKSGAKIIVEGANG-PLTPEADE-ILRERGILVIPD 169 (244)
T ss_dssp SSSSEEEEESSSTSBSCHHHC----H---CHHTT-SEEEESSSS-SBSHHHHH-HHHHTT-EEE-H
T ss_pred ccccEEEEcCCCCeeCHHHHH----H---HHhccCcEEEeCcch-hccHHHHH-HHHHCCCEEEcc
Confidence 589999999733222222221 0 121 25688888887 44444443 777789888744
No 448
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=95.01 E-value=0.11 Score=47.27 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=62.3
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh-hHHHHHhhCCCC
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP-SDVRHVLLHPSS 128 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~-~~~~~v~~~~~~ 128 (351)
|++|| |+|.+|..-|+.|...|..|++-..+|=.+-+..=.|..+ .+.+|++++.|+++.++..- ..+.+-+.
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTGc~dii~~~H~~---- 289 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTGCKDIITGEHFD---- 289 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccCCcchhhHHHHH----
Confidence 66666 9999999999999999999999988874332323336665 47999999999999988532 23334443
Q ss_pred CcccCCCCCcEEEecCCC
Q 018694 129 GALSGLRPGGIIVDMTTS 146 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s~~ 146 (351)
+ ++.+.++.++.-.
T Consensus 290 ~----mk~d~IvCN~Ghf 303 (434)
T KOG1370|consen 290 Q----MKNDAIVCNIGHF 303 (434)
T ss_pred h----CcCCcEEeccccc
Confidence 3 4567777766544
No 449
>PRK06182 short chain dehydrogenase; Validated
Probab=95.00 E-value=0.13 Score=46.55 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=33.9
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56888875 99999999999999999999999987665443
No 450
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.00 E-value=0.11 Score=48.24 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=53.7
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCe-EEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYT-VTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~-V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.++.|+|+|.+|...++.+...|.. |.++++++++++...+.. ..+..++.-...|+||-|+..+..+...++
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~---- 219 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLVR---- 219 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHHH----
Confidence 4699999999999999888888886 556687776654433222 111111122357999999965555565554
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.+.++..++.+.
T Consensus 220 ----~l~~~G~iv~~G 231 (308)
T TIGR01202 220 ----RLAKGGEIVLAG 231 (308)
T ss_pred ----hhhcCcEEEEEe
Confidence 234555555544
No 451
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.99 E-value=0.063 Score=50.69 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=33.4
Q ss_pred CCCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccch
Q 018694 48 TNTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQ 86 (351)
Q Consensus 48 ~~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~ 86 (351)
..|||.|.| +|.+|+.+++.|.+.|++|++.+|+.+..+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~ 48 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL 48 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 347999997 599999999999999999999888865443
No 452
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.98 E-value=0.087 Score=48.84 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=44.5
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh---c-----C-------CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD---I-----G-------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~---~-----g-------~~~~~~~~~~~~~~DiIi~~v 113 (351)
++|.|.| +|-+|+.+++.|.+.|++|++.+|+......... . . +.-....+++++++|+||.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence 6899997 6999999999999999999998887654221111 0 1 111123445567788888876
No 453
>PRK08017 oxidoreductase; Provisional
Probab=94.97 E-value=0.048 Score=48.65 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=34.7
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46889988 99999999999999999999999987665543
No 454
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=94.97 E-value=0.066 Score=48.72 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=43.5
Q ss_pred EEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcc--cCCHHHhhcCCCEEEEecC
Q 018694 52 IGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHL--ADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 52 I~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~--~~~~~~~~~~~DiIi~~vp 114 (351)
|.|.| +|.+|+.+++.|.+.|++|++.+|++.........+... .....+.+.++|+||.|..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 35665 699999999999999999999999877644322111110 1233445667899888884
No 455
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.96 E-value=0.036 Score=53.15 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=32.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.++|.|||+|-.|.++|..|.+.|++|+++++.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999998864
No 456
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.96 E-value=0.13 Score=46.56 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=33.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
|+++.|.|+ |.+|..+++.|.+.|++|++.+|+++..+.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 356777765 99999999999999999999999876655443
No 457
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.95 E-value=0.094 Score=51.31 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=50.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc---------------------chhHHhcCCcc--------cCCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK---------------------AQPLLDIGAHL--------ADSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~---------------------~~~~~~~g~~~--------~~~~ 99 (351)
-.||+|||+|.-|.+-|..|...||.|+++++.+.. ++.+.+.|+.+ .-+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~ 202 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITL 202 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCH
Confidence 379999999999999999999999999999887542 12233334322 3367
Q ss_pred HHhhcCCCEEEEecC
Q 018694 100 HSLASQSDVVFSIVG 114 (351)
Q Consensus 100 ~~~~~~~DiIi~~vp 114 (351)
+++.++.|.|++|+.
T Consensus 203 ~~L~~e~Dav~l~~G 217 (457)
T COG0493 203 EELLKEYDAVFLATG 217 (457)
T ss_pred HHHHHhhCEEEEecc
Confidence 788888899999993
No 458
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.95 E-value=0.15 Score=49.48 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEE-Ee----------CCcccch---hHHhc------------CCcccCCHHHh
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTV-FN----------RTLSKAQ---PLLDI------------GAHLADSPHSL 102 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~-~d----------r~~~~~~---~~~~~------------g~~~~~~~~~~ 102 (351)
.+||.|.|.|++|...|+.|.+.|..|+. .| .+.+.+. .+.+. +.... +.++.
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~ 306 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARP 306 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCccc
Confidence 47899999999999999999999999886 45 2222221 11111 22222 22332
Q ss_pred -hcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCC-cEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 103 -ASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPG-GIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 103 -~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~-~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
-.+||+++-|.-...-..+... ++. .++ .+|+...|+ |.+.+. .+.+.++++.++.-
T Consensus 307 ~~~~cDIliPaAl~n~I~~~na~----~l~---a~g~~~V~EgAN~-P~t~eA-~~~L~~rgI~~~PD 365 (444)
T PRK14031 307 WGEKGDIALPSATQNELNGDDAR----QLV---ANGVIAVSEGANM-PSTPEA-IKVFQDAKILYAPG 365 (444)
T ss_pred ccCCCcEEeecccccccCHHHHH----HHH---hcCCeEEECCCCC-CCCHHH-HHHHHHCCcEEeCh
Confidence 2479999988843333333333 332 123 367777777 666554 44556678888754
No 459
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.95 E-value=0.1 Score=51.57 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=31.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
..+||.|||.|..|...|..|.+.|++|+++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34799999999999999999999999999999864
No 460
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.94 E-value=0.27 Score=44.04 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=46.1
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCC--cccCCHHHhh---cCCCEEEEecCChhHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGA--HLADSPHSLA---SQSDVVFSIVGYPSDVR 120 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~--~~~~~~~~~~---~~~DiIi~~vp~~~~~~ 120 (351)
.++-|+|+|..+.++++.....||+|+++|..++......-.++ .....+++.+ ...+.|++.+ .+...+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~t-h~h~~D 175 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLT-HDHALD 175 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEe-CChHHH
Confidence 68999999999999999999999999999876553221110111 1122334333 2557777777 554444
No 461
>PRK07236 hypothetical protein; Provisional
Probab=94.92 E-value=0.041 Score=52.68 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=32.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
+++|.|||+|..|.+.|..|++.|++|+++++.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998764
No 462
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.89 E-value=0.051 Score=38.26 Aligned_cols=30 Identities=40% Similarity=0.612 Sum_probs=27.2
Q ss_pred EEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 54 WIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 54 iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|||+|.-|.+.|..|.+.|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999999854
No 463
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.85 E-value=0.12 Score=54.79 Aligned_cols=66 Identities=29% Similarity=0.391 Sum_probs=51.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc---------------------chhHHhcCCcccC--------C
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK---------------------AQPLLDIGAHLAD--------S 98 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~---------------------~~~~~~~g~~~~~--------~ 98 (351)
--.||+|||.|.-|.+-|..|-+.||.|++|.|+.-- ++.+..+|+.+.+ +
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs 1863 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVS 1863 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccccc
Confidence 3478999999999999999999999999999987421 1222333554433 5
Q ss_pred HHHhhcCCCEEEEec
Q 018694 99 PHSLASQSDVVFSIV 113 (351)
Q Consensus 99 ~~~~~~~~DiIi~~v 113 (351)
.+++.+.-|.|++|+
T Consensus 1864 ~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1864 LDELKKENDAIVLAT 1878 (2142)
T ss_pred HHHHhhccCeEEEEe
Confidence 677888899999998
No 464
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.12 Score=46.86 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=34.7
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD 90 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~ 90 (351)
+++|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 356888865 999999999999999999999999876655443
No 465
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=94.83 E-value=0.069 Score=49.99 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEE
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVF 78 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~ 78 (351)
|+||+|.|+|.+|..+.+.|.++++ ++.++
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vv 32 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVV 32 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEE
Confidence 5799999999999999999987542 45555
No 466
>PRK05569 flavodoxin; Provisional
Probab=94.82 E-value=1.7 Score=35.00 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=69.1
Q ss_pred CCeEEEE---ccCh---hhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCCh------
Q 018694 49 NTRIGWI---GTGV---MGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYP------ 116 (351)
Q Consensus 49 ~~kI~iI---G~G~---mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~------ 116 (351)
|+||.|| +.|+ |...++..+.+.|.+|.+++.+... .. .+.++|.|++++|..
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~--------------~~-~~~~~d~iilgsPty~~~~~~ 65 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK--------------VE-DVLEADAVAFGSPSMDNNNIE 65 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC--------------HH-HHhhCCEEEEECCCcCCCcCC
Confidence 4566666 3343 5566777777778888887765321 12 356899999999741
Q ss_pred -hHHHHHhhCCCCCcccCCCCCcEEEecCC-C--ChhHHHHHHHHHhcCCCcEEeccCCCCchhhccCceeEEecCCHHH
Q 018694 117 -SDVRHVLLHPSSGALSGLRPGGIIVDMTT-S--EPSLASELSAAASSKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESV 192 (351)
Q Consensus 117 -~~~~~v~~~~~~~i~~~l~~~~~ii~~s~-~--~~~~~~~l~~~~~~~~~~~v~~pv~~~~~~~~~g~~~~~~~g~~~~ 192 (351)
..+..++. .+.....+++.++-.++ + .......+.+.+...|..++.. +.+-...+++.
T Consensus 66 ~~~~~~~~~----~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~-------------~~~~~~p~~~~ 128 (141)
T PRK05569 66 QEEMAPFLD----QFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD-------------LAVNESPNKEE 128 (141)
T ss_pred hHHHHHHHH----HhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee-------------EEEccCCCHHH
Confidence 24666776 54432224544333333 2 1223445666666667665531 11212246677
Q ss_pred HHHHHHHHHhh
Q 018694 193 VQKLNPLFALM 203 (351)
Q Consensus 193 ~~~v~~ll~~~ 203 (351)
.+.+.++-+.+
T Consensus 129 ~~~~~~~g~~l 139 (141)
T PRK05569 129 LNSAKELGKKL 139 (141)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 467
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.097 Score=46.91 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
+++|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFA 43 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36788885 699999999999999999999999977665543
No 468
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.75 E-value=0.084 Score=56.44 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc---------------------chhHHhcCCccc--------CCH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK---------------------AQPLLDIGAHLA--------DSP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~~~ 99 (351)
..||+|||+|.-|.+-|..|++.||+|+++++.+.. ++.+.+.|+.+. -+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~ 385 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATL 385 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeH
Confidence 479999999999999999999999999999986421 122333354421 245
Q ss_pred HHhhc-CCCEEEEecCC
Q 018694 100 HSLAS-QSDVVFSIVGY 115 (351)
Q Consensus 100 ~~~~~-~~DiIi~~vp~ 115 (351)
+++.. ..|.||+++..
T Consensus 386 ~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 386 EDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHhccccCCEEEEeCCC
Confidence 55544 58999999943
No 469
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.73 E-value=0.041 Score=52.77 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRT 81 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~ 81 (351)
+++|.|||+|..|..+|..|++.|++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999998
No 470
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.092 Score=46.01 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.6
Q ss_pred CCeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 49 NTRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 49 ~~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
|+++.|.| .|.+|..++..|++.|++|++++|+++..+.+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL 41 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH
Confidence 35677776 69999999999999999999999998765444
No 471
>PRK06847 hypothetical protein; Provisional
Probab=94.70 E-value=0.047 Score=51.88 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+++|.|||+|..|..+|..|.+.|++|++++++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357899999999999999999999999999998754
No 472
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.69 E-value=0.13 Score=47.24 Aligned_cols=72 Identities=19% Similarity=0.418 Sum_probs=54.6
Q ss_pred CeEEEEccC-hhhHHHHHHHHH----CCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLN----AGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~----~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
++|.|||-+ -+|..++..|.+ .|..|+++.... .++++.+.++|+||.+++++.-+..
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~li~~--- 222 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARFITA--- 222 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCccCH---
Confidence 689999875 579999999987 678888887542 3567788999999999976632221
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.++++|.++||++.
T Consensus 223 -------~~vk~GavVIDVgi 236 (295)
T PRK14174 223 -------DMVKPGAVVIDVGI 236 (295)
T ss_pred -------HHcCCCCEEEEeec
Confidence 23478999999874
No 473
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.67 E-value=0.095 Score=49.30 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=43.7
Q ss_pred CeEEEEccChhhHHHHHHHHH-C-CCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEecC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLN-A-GYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIVG 114 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~-~-g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~vp 114 (351)
.+|.|+|+|.+|...+..++. . +.+|+++++++++.+.+.+.+... ..++..+ ..|+||-|+.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G 231 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVG 231 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCC
Confidence 579999999999998887765 3 457999999988877665433221 1112222 3688888885
No 474
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.67 E-value=0.17 Score=49.07 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=66.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEE-EEeCC----------cccchhHH---hc-------------CCcccCCHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVT-VFNRT----------LSKAQPLL---DI-------------GAHLADSPHS 101 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~-~~dr~----------~~~~~~~~---~~-------------g~~~~~~~~~ 101 (351)
.+||.|=|.|++|...|+.|.+.|..|+ +.|.+ .++++.+. +. +....+..+-
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~ 316 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKP 316 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCc
Confidence 3689999999999999999999999887 66776 33332211 11 1222221111
Q ss_pred hhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEec
Q 018694 102 LASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDA 168 (351)
Q Consensus 102 ~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~ 168 (351)
.-.+||+.+-|--...-..+... .+.. ..-++|+.-.|. |.+. +-.+.+.++|+.|+..
T Consensus 317 ~~~~cDI~iPcA~~n~I~~~~a~----~l~~--~~ak~V~EgAN~-p~t~-eA~~~L~~~GI~~~PD 375 (454)
T PTZ00079 317 WEVPCDIAFPCATQNEINLEDAK----LLIK--NGCKLVAEGANM-PTTI-EATHLFKKNGVIFCPG 375 (454)
T ss_pred ccCCccEEEeccccccCCHHHHH----HHHH--cCCeEEEecCCC-CCCH-HHHHHHHHCCcEEECh
Confidence 22479988888722221122222 1211 134578888887 5444 4556667789888854
No 475
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.66 E-value=0.064 Score=54.22 Aligned_cols=67 Identities=31% Similarity=0.470 Sum_probs=47.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc---------------------cchhHHhcCCcccC--------CH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS---------------------KAQPLLDIGAHLAD--------SP 99 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~---------------------~~~~~~~~g~~~~~--------~~ 99 (351)
..+|.|||+|..|...|..|.+.|++|+++++.+. +++.+.+.|+.... +.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~ 216 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITL 216 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCH
Confidence 47899999999999999999999999999996432 22334444543211 12
Q ss_pred HHhhcCCCEEEEecCC
Q 018694 100 HSLASQSDVVFSIVGY 115 (351)
Q Consensus 100 ~~~~~~~DiIi~~vp~ 115 (351)
++.....|+||+++..
T Consensus 217 ~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 217 EQLEGEFDAVFVAIGA 232 (564)
T ss_pred HHHHhhCCEEEEeeCC
Confidence 3333468999999954
No 476
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.64 E-value=0.11 Score=48.46 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=23.4
Q ss_pred eEEEEccChhhHHHHHHHHHCC----CeEEEE
Q 018694 51 RIGWIGTGVMGRSMCAHLLNAG----YTVTVF 78 (351)
Q Consensus 51 kI~iIG~G~mG~~ia~~L~~~g----~~V~~~ 78 (351)
||+|+|+|.+|..+.+.|.+.+ ++|+..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 6999999999999999988764 666644
No 477
>PRK07045 putative monooxygenase; Reviewed
Probab=94.62 E-value=0.05 Score=52.08 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
..++|.|||+|..|...|..|.+.|++|+++++.++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3468999999999999999999999999999987643
No 478
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.15 Score=45.17 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=33.3
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL 47 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 67888875 9999999999999999999999987765543
No 479
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.62 E-value=0.39 Score=46.85 Aligned_cols=115 Identities=11% Similarity=0.138 Sum_probs=67.6
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc--chhHHhcCCcccC--CHHHhhcCCCEEEEecCCh---hHHHHH
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDIGAHLAD--SPHSLASQSDVVFSIVGYP---SDVRHV 122 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~--~~~~~~~g~~~~~--~~~~~~~~~DiIi~~vp~~---~~~~~v 122 (351)
.+|.|||.|..|.+.++.|.+.|++|+++|..+.. .+.+ +.|+.... ...+.+.+.|+||..-.-+ ..+...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a 85 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAA 85 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHH
Confidence 57999999999999999999999999999975432 2233 23654422 2234456778655433111 222222
Q ss_pred hhCCC-----CCccc-CCCCCcEEEecCCCChhHHHHHHHHHhcCCCcE
Q 018694 123 LLHPS-----SGALS-GLRPGGIIVDMTTSEPSLASELSAAASSKNCSA 165 (351)
Q Consensus 123 ~~~~~-----~~i~~-~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~ 165 (351)
..... .++.. ......+-|.-++|...++.-+...+...+..+
T Consensus 86 ~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 86 ADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred HHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 22100 01111 122345667778887777777777776555443
No 480
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.61 E-value=0.063 Score=51.80 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 48 TNTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 48 ~~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
...+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 347899999999999999999999999999998754
No 481
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.60 E-value=0.12 Score=47.08 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=55.6
Q ss_pred CeEEEEccC-hhhHHHHHHHHH----CCCeEEEEeCCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHHHhh
Q 018694 50 TRIGWIGTG-VMGRSMCAHLLN----AGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLL 124 (351)
Q Consensus 50 ~kI~iIG~G-~mG~~ia~~L~~----~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~ 124 (351)
+++.|||-+ -+|..++..|.+ .+..|+++.... .++.+.++++|+||.+++.+.-+..
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~~--- 220 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVTA--- 220 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCCH---
Confidence 689999874 569999999998 677899887532 3577888999999999976654332
Q ss_pred CCCCCcccCCCCCcEEEecCC
Q 018694 125 HPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 125 ~~~~~i~~~l~~~~~ii~~s~ 145 (351)
.+++++.++||++.
T Consensus 221 -------~~vk~GavVIDVGi 234 (286)
T PRK14184 221 -------DMVKPGAVVVDVGI 234 (286)
T ss_pred -------HHcCCCCEEEEeee
Confidence 23468999999873
No 482
>PLN02214 cinnamoyl-CoA reductase
Probab=94.60 E-value=0.072 Score=50.19 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccch-----hHHhc--CC-------cccCCHHHhhcCCCEEEEe
Q 018694 48 TNTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQ-----PLLDI--GA-------HLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 48 ~~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~-----~~~~~--g~-------~~~~~~~~~~~~~DiIi~~ 112 (351)
.+++|.|.|+ |.+|+.++..|.+.|++|++..|+.+... .+... .+ .-..+..++++.+|+||-+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 3578999987 99999999999999999999998765421 11100 11 1112334556778888888
Q ss_pred cC
Q 018694 113 VG 114 (351)
Q Consensus 113 vp 114 (351)
..
T Consensus 89 A~ 90 (342)
T PLN02214 89 AS 90 (342)
T ss_pred cC
Confidence 73
No 483
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.16 Score=46.64 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=33.8
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|++.|++|++.+|+.+..+.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56777765 99999999999999999999999977665543
No 484
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=94.59 E-value=0.68 Score=44.90 Aligned_cols=113 Identities=24% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCeEEEEccChhhHH-HHHHHHHCCCeEEEEeCCccc-chhHHhcCCcccCCHHH-hhcCCCEEEEecCC---hhHHHHH
Q 018694 49 NTRIGWIGTGVMGRS-MCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHS-LASQSDVVFSIVGY---PSDVRHV 122 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~-ia~~L~~~g~~V~~~dr~~~~-~~~~~~~g~~~~~~~~~-~~~~~DiIi~~vp~---~~~~~~v 122 (351)
+.||-|||.|..|.+ +|..|.+.|++|.+.|..... .+.+.++|+.+...-++ -+.+.|.||....- ...+..+
T Consensus 7 ~~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi~~A 86 (459)
T COG0773 7 LPKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNPEIVAA 86 (459)
T ss_pred CceEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCHHHHHH
Confidence 347999999999976 999999999999999976543 56677778776543333 25567776665522 2233333
Q ss_pred hhCCC-----CCcc-cCCC-CCcEEEecCCCChhHHHHHHHHHhcC
Q 018694 123 LLHPS-----SGAL-SGLR-PGGIIVDMTTSEPSLASELSAAASSK 161 (351)
Q Consensus 123 ~~~~~-----~~i~-~~l~-~~~~ii~~s~~~~~~~~~l~~~~~~~ 161 (351)
.+... .+++ +.+. +..+-|.-+-|...++.-+...+...
T Consensus 87 ~e~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~ 132 (459)
T COG0773 87 LERGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAA 132 (459)
T ss_pred HHcCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhC
Confidence 33100 0001 1122 33355555557666666666666544
No 485
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.12 Score=47.12 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=31.0
Q ss_pred eEEEE-ccChhhHHHHHHHHHCCCeEEEEeCCcccchhH
Q 018694 51 RIGWI-GTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPL 88 (351)
Q Consensus 51 kI~iI-G~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~ 88 (351)
++.|. |.|.+|.+++..|++.|++|++.+|+++..+.+
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~ 46 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQA 46 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35555 579999999999999999999999987665443
No 486
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=94.54 E-value=0.16 Score=45.40 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=45.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCC--eEEEEeCCcccchhHH-h--cC--------CcccCCHHHhhcCCCEEEEecC
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGY--TVTVFNRTLSKAQPLL-D--IG--------AHLADSPHSLASQSDVVFSIVG 114 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~--~V~~~dr~~~~~~~~~-~--~g--------~~~~~~~~~~~~~~DiIi~~vp 114 (351)
-.||.|+|.|++|.+.|..+...|. ++.++|.++++++.-. + .| +....|. .+.++++++|+...
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy-~~sa~S~lvIiTAG 97 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY-SVSANSKLVIITAG 97 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcc-cccCCCcEEEEecC
Confidence 4699999999999999999887776 8999999988754311 1 01 1222222 23457899998874
No 487
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.51 E-value=0.29 Score=48.52 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=31.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHCCCeEEEEeCCc
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTL 82 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~ 82 (351)
.+||.|||+|..|...|..|.+.|++|+++++.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3699999999999999999999999999998764
No 488
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.48 E-value=0.057 Score=50.34 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=30.2
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCccc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSK 84 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~ 84 (351)
.+|.|||+|--|..+|..|++.|++|+++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 37999999999999999999999999999998654
No 489
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.48 E-value=0.05 Score=50.23 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=56.7
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeE---EEEe---CCcccchhHHhcCCcccCCHHHhhcCCCEEEEecCChhHHHH
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTV---TVFN---RTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRH 121 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V---~~~d---r~~~~~~~~~~~g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~ 121 (351)
.++|+| |+ |.+|..|.+.|.+++++| .+++ ++..+.-.+..+.+.+..-.++..++.|++|+ . .....++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-a-g~~~s~~ 79 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-A-GKMAQAE 79 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-c-CHHHHHH
Confidence 478999 98 999999999999999854 3443 33333333333333333323334578999999 7 5555555
Q ss_pred HhhCCCCCcccCCCCCcEEEecCC
Q 018694 122 VLLHPSSGALSGLRPGGIIVDMTT 145 (351)
Q Consensus 122 v~~~~~~~i~~~l~~~~~ii~~s~ 145 (351)
... . +...|.++||.|+
T Consensus 80 ~ap----~---a~~aG~~VIDnSs 96 (322)
T PRK06901 80 HLA----Q---AAEAGCIVIDLYG 96 (322)
T ss_pred HHH----H---HHHCCCEEEECCh
Confidence 544 2 2357899999774
No 490
>PRK07538 hypothetical protein; Provisional
Probab=94.46 E-value=0.051 Score=52.55 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
|+|.|||+|-.|.++|..|.+.|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999999999999999999998764
No 491
>PLN02650 dihydroflavonol-4-reductase
Probab=94.45 E-value=0.16 Score=47.96 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=45.4
Q ss_pred CCeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhc----C-----------CcccCCHHHhhcCCCEEEEe
Q 018694 49 NTRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDI----G-----------AHLADSPHSLASQSDVVFSI 112 (351)
Q Consensus 49 ~~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~----g-----------~~~~~~~~~~~~~~DiIi~~ 112 (351)
-++|.|.|+ |.+|+.++..|.+.|++|++.+|+.+....+... + +.-....++++..+|+||-+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~ 84 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHV 84 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEe
Confidence 368999974 9999999999999999999998886554332110 1 11112344566678888877
Q ss_pred c
Q 018694 113 V 113 (351)
Q Consensus 113 v 113 (351)
.
T Consensus 85 A 85 (351)
T PLN02650 85 A 85 (351)
T ss_pred C
Confidence 6
No 492
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.18 Score=45.51 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=34.1
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
++|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888865 99999999999999999999999987765543
No 493
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.43 E-value=0.033 Score=51.16 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=37.8
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHHhhc--CCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLAS--QSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~~DiIi~~v 113 (351)
|||.|+| .|.+|.++...|.+.|++|+.++|+.-.+.. .....+.+. .+|+||.|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d--------~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTD--------PEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTS--------HHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCC--------HHHHHHHHHHhCCCeEeccc
Confidence 7999999 5999999999999999999999877322111 112223322 589999997
No 494
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.42 E-value=0.38 Score=50.53 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.7
Q ss_pred CCeEEEEccChhhHHHHHHHHH
Q 018694 49 NTRIGWIGTGVMGRSMCAHLLN 70 (351)
Q Consensus 49 ~~kI~iIG~G~mG~~ia~~L~~ 70 (351)
..+|+++|+|.+|..+.+.|.+
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~ 479 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAR 479 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHH
Confidence 3689999999999999999865
No 495
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.40 E-value=0.06 Score=51.50 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=31.4
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcc
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLS 83 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~ 83 (351)
.+|.|||+|..|.++|..|++.|++|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4799999999999999999999999999998753
No 496
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.085 Score=48.49 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=32.8
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchh
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQP 87 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~ 87 (351)
|+|.|.| +|-+|+.++..|.+.|++|.+.+|.......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP 39 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccc
Confidence 3589998 5999999999999999999999998765443
No 497
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=94.37 E-value=1.8 Score=37.62 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCcccCCHHHhhcCCCEEEEecCChhHHHHHhhCCCCCcccCCCCCcEEEecCCCChhHHHHHHHHHhcCCCcEEeccCC
Q 018694 92 GAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTSEPSLASELSAAASSKNCSAIDAPVS 171 (351)
Q Consensus 92 g~~~~~~~~~~~~~~DiIi~~vp~~~~~~~v~~~~~~~i~~~l~~~~~ii~~s~~~~~~~~~l~~~~~~~~~~~v~~pv~ 171 (351)
|+.++++..+++.++|+|+.-.|+...-..+++ ++.+.+.+|.++-+.+++......++.+...+...++.+ ..
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiik----kfiddipegaivthactipttkf~kifed~gredlnvts--yh 199 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIK----KFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTS--YH 199 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHH----HHHhcCCCCceEeeecccchHHHHHHHHHhCccccceec--cC
Confidence 356677778889999999999998876666777 777778899999999888554455555554433333322 11
Q ss_pred CCchhhccCceeEEecC--CHHHHHHHHHHHH
Q 018694 172 GGDRGAKTGTLAIFAGG--DESVVQKLNPLFA 201 (351)
Q Consensus 172 ~~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~ 201 (351)
++..-...|+ +++..| ++++.+.+-++-+
T Consensus 200 pg~vpemkgq-vyiaegyaseeavn~lyelg~ 230 (343)
T COG4074 200 PGTVPEMKGQ-VYIAEGYASEEAVNALYELGE 230 (343)
T ss_pred CCCCccccCc-EEEecccccHHHHHHHHHHHH
Confidence 2222223466 555555 6666666655544
No 498
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.1 Score=46.13 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.6
Q ss_pred CeEEEEcc-ChhhHHHHHHHHHCCCeEEEEeCCcccchhHH
Q 018694 50 TRIGWIGT-GVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLL 89 (351)
Q Consensus 50 ~kI~iIG~-G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~ 89 (351)
+++.|.|+ |.+|..++..|++.|++|++++|++++.+.+.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLA 50 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57888987 89999999999999999999999977665544
No 499
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.35 E-value=0.19 Score=46.79 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=44.7
Q ss_pred CeEEEEc-cChhhHHHHHHHHHCCCeEEEEeCCcccchhHHh----cC-----------CcccCCHHHhhcCCCEEEEec
Q 018694 50 TRIGWIG-TGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD----IG-----------AHLADSPHSLASQSDVVFSIV 113 (351)
Q Consensus 50 ~kI~iIG-~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~----~g-----------~~~~~~~~~~~~~~DiIi~~v 113 (351)
++|.|.| +|.+|+.++..|.+.|++|++..|+++..+.... .+ +.-..+.+++++.+|+||-+.
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A 85 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTA 85 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeC
Confidence 6788887 5999999999999999999988888654332211 01 111223345566788888877
Q ss_pred C
Q 018694 114 G 114 (351)
Q Consensus 114 p 114 (351)
.
T Consensus 86 ~ 86 (325)
T PLN02989 86 S 86 (325)
T ss_pred C
Confidence 3
No 500
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.34 E-value=0.21 Score=46.74 Aligned_cols=87 Identities=23% Similarity=0.229 Sum_probs=57.9
Q ss_pred CeEEEEccChhhHHHHHHHHHCCCeEEEEeCCcccchhHHhcCCcccCCHHH-hhcCCCEEEEecCChhHHHHHhhCCCC
Q 018694 50 TRIGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHS-LASQSDVVFSIVGYPSDVRHVLLHPSS 128 (351)
Q Consensus 50 ~kI~iIG~G~mG~~ia~~L~~~g~~V~~~dr~~~~~~~~~~~g~~~~~~~~~-~~~~~DiIi~~vp~~~~~~~v~~~~~~ 128 (351)
.+|.|.|+|.+|...++.....|..|++.++++++.+.+++.|....-+..+ .....|+++.++..+..+...+.
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~~---- 242 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPPALE---- 242 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHHHHH----
Confidence 5799999999999888877788989998999998888777777643322111 11246777777755544444443
Q ss_pred CcccCCCCCcEEEecC
Q 018694 129 GALSGLRPGGIIVDMT 144 (351)
Q Consensus 129 ~i~~~l~~~~~ii~~s 144 (351)
.+.++..++...
T Consensus 243 ----~l~~~G~~v~~G 254 (329)
T TIGR02822 243 ----ALDRGGVLAVAG 254 (329)
T ss_pred ----hhCCCcEEEEEe
Confidence 334555555443
Done!