BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018696
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 153/339 (45%), Gaps = 37/339 (10%)
Query: 29 RLVVCFGEMLID--------------FVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRL 74
+ ++CFGE LID F+ GG ++RL
Sbjct: 5 KTILCFGEALIDXLAQPLVKKGXPRAFLQCAGGAP---------------ANVAVAVARL 49
Query: 75 GGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFR 134
GG+ FVG LG D FG L + E V T G+ STA+TALAFV L A GER F F+R
Sbjct: 50 GGAVQFVGXLGSDXFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYR 109
Query: 135 HPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194
P+AD+L IFH S S A+ +G+I+S+D N
Sbjct: 110 PPAADLLFRVEHFQDASFSDALIFHACSNSXTDADIAEVTFEGXRRAQAAGAIVSFDLNF 169
Query: 195 RLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLI 254
R LWP+ E + AD++K+S +E+ +L D N V+++L+ +LL+
Sbjct: 170 RPXLWPNGENPASRLWKGLSLADVVKLSSEELDYL-ANTLAADANAVIQQLWQGRAQLLL 228
Query: 255 VTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCL-------AADQNLIKD 307
VT+ + +YT+ G VP + + D+ AGD+FV G L AA + D
Sbjct: 229 VTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGXLYTFAQQFDDAAALIDFCHD 288
Query: 308 ENRLREALLFANACGALTVTERGAIPALPTKEAALKLLH 346
+ L FA A GAL VT +GA A P L L+
Sbjct: 289 PESIVSTLRFAAAVGALAVTRQGAFTAXPXLSEVLSLIQ 327
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 136/266 (51%), Gaps = 7/266 (2%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
++RLGG F+G LGDD+ G L + ++N VD + +R D+ +A+ V L ADGER F
Sbjct: 60 VARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSF 119
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
+ HP AD + +L +Q F++ SI L P R L +E+G + +
Sbjct: 120 TYLVHPGADTYVSPQDLPP--FRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLF 177
Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 250
D NLR +W + + E I A I KVS DE+ L+G D L L
Sbjct: 178 DVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDL---GC 234
Query: 251 KLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENR 310
I++ G+ G T E + P + VDTTGAGD+FV G+L L+ + D
Sbjct: 235 DTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLS--RANCWDHAL 292
Query: 311 LREALLFANACGALTVTERGAIPALP 336
L EA+ ANACGA+ VT +GA+ ALP
Sbjct: 293 LAEAISNANACGAMAVTAKGAMTALP 318
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 133/266 (50%), Gaps = 7/266 (2%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
++RLGG F+G LGDD+ G L + ++N VD + +R D+ +A+ V L ADGER F
Sbjct: 60 VARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSF 119
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
+ HP AD + +L +Q F++ SI L P R L +E+G + +
Sbjct: 120 TYLVHPGADTYVSPQDLPP--FRQYEWFYFSSIGLTDRPAREACLEGARRXREAGGYVLF 177
Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 250
D NLR W + + E I A I KVS DE+ L+G D L L
Sbjct: 178 DVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDL---GC 234
Query: 251 KLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENR 310
I++ G+ G T E + P + VDTTGAGD+FV G+L L+ + D
Sbjct: 235 DTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLS--RANCWDHAL 292
Query: 311 LREALLFANACGALTVTERGAIPALP 336
L EA+ ANACGA VT +GA ALP
Sbjct: 293 LAEAISNANACGAXAVTAKGAXTALP 318
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 13/313 (4%)
Query: 31 VVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEFG 90
VV GE+L+D + T SL +SRLG A + +LG D FG
Sbjct: 24 VVSLGEILVDXISTEEVNSLSQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFG 83
Query: 91 YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKN 150
L ++LK + T G++ D RT + +V+ ++ ++L +R AD L E ++
Sbjct: 84 NYLLDVLKGEQIITDGIQQDKERRTTIVYVS-KSTRTPDWLPYRE--ADXYLQEDDIIFE 140
Query: 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIM 210
LIK+ +FH + L +P R T + A N A+E G I+ +DP R LWP + +
Sbjct: 141 LIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVE 200
Query: 211 SIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFK 270
I +AD +K S D+ L G D + +++ +K +I+T G +G E
Sbjct: 201 EIISRADFVKPSLDDARHLFGPDSPEN---YVKRYLELGVKAVILTLGEEGVIASDGEEI 257
Query: 271 GRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 330
R+P AVD TGAGD+F SG + L D ++ ++ N A + G
Sbjct: 258 IRIPAFSEDAVDVTGAGDAFWSGFICGLL-------DGYTVKRSIKLGNGVAAFKIRGVG 310
Query: 331 AIPALPTKEAALK 343
A+ +P+KE +K
Sbjct: 311 ALSPVPSKEDIIK 323
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 11/260 (4%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
++RLG + +G+D FG + + L + VD G+ T AFVT G+R+F
Sbjct: 47 VTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDF 106
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
+F +A L +D+N++K + FH SL + A+ + K +G ++S+
Sbjct: 107 IFNIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISF 166
Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 250
DPN+R E R+ + + + DI S+ E+ L+ H+ + +
Sbjct: 167 DPNIRKEXLDIPE-XRDALHFVLELTDIYXPSEGEVLLLS---PHSTPERAIAGFLEEGV 222
Query: 251 KLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENR 310
K +IV G++G YY+ + V + VD TGAGD F + C + L D +R
Sbjct: 223 KEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIAC----RQLGFDAHR 278
Query: 311 LREALLFANACGALTVTERG 330
AL +ANACGAL VT RG
Sbjct: 279 ---ALQYANACGALAVTRRG 295
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 145/318 (45%), Gaps = 28/318 (8%)
Query: 30 LVVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEF 89
L+ GE+LID + G L +SRLG S+ + K+G+D F
Sbjct: 3 LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPF 61
Query: 90 GYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK 149
G L L + NVDT G+ D T + FV L+ FL + A ++++
Sbjct: 62 GEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLY-DDVAYFNXTLNDINW 119
Query: 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGI 209
+++++ I ++GS+ L P R T + K S S++++D NLRL LW +E E
Sbjct: 120 DIVEEAKIVNFGSVILARNPSRETVXKVIKKIKGS-SLIAFDVNLRLDLWRGQE---EEX 175
Query: 210 MSIWDQ----ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYY 265
+ + ++ ADI+K S++E+ +L + + L +T G KGCR
Sbjct: 176 IKVLEESIKLADIVKASEEEVLYLEN-----------QGVEVKGSXLTAITLGPKGCRLI 224
Query: 266 TKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALT 325
E VP +DTTGAGD+F + +L + + L + FAN AL+
Sbjct: 225 KNETVVDVPSYNVNPLDTTGAGDAFXAALLVGILKLKG-----LDLLKLGKFANLVAALS 279
Query: 326 VTERGAIPALPTKEAALK 343
+RGA + P K+ LK
Sbjct: 280 TQKRGAW-STPRKDELLK 296
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 144/318 (45%), Gaps = 28/318 (8%)
Query: 30 LVVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEF 89
L+ GE+LID + G L +SRLG S+ + K+G+D F
Sbjct: 3 LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPF 61
Query: 90 GYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK 149
G L L + NVDT G+ D T + FV L+ FL + A ++++
Sbjct: 62 GEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLY-DDVAYFNXTLNDINW 119
Query: 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGI 209
+++++ I ++GS+ L P R T + K S S++++D NLRL LW +E E
Sbjct: 120 DIVEEAKIVNFGSVILARNPSRETVXKVIKKIKGS-SLIAFDVNLRLDLWRGQE---EEX 175
Query: 210 MSIWDQ----ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYY 265
+ + ++ ADI+K S++E+ +L + + L +T G KG R
Sbjct: 176 IKVLEESIKLADIVKASEEEVLYLEN-----------QGVEVKGSXLTAITLGPKGFRLI 224
Query: 266 TKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALT 325
E VP +DTTGAGD+F + +L + + L + FAN AL+
Sbjct: 225 KNETVVDVPSYNVNPLDTTGAGDAFXAALLVGILKLKG-----LDLLKLGKFANLVAALS 279
Query: 326 VTERGAIPALPTKEAALK 343
+RGA + P K+ LK
Sbjct: 280 TQKRGAW-STPRKDELLK 296
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 9/277 (3%)
Query: 72 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTA-RTALAFVTLRADGEREF 130
S+LG + F+GK+ DD+ G + + + VDTS + D +T LAF +++ E
Sbjct: 55 SKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSI 114
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
L +R AD+ L E+++ I++ + +L P R L A+ LAK + + +
Sbjct: 115 LXYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVF 174
Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 250
+ + R W + E + +Q+DI+ + +E L + D++ + LF +
Sbjct: 175 ELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSP 234
Query: 251 KLLIVTEGSKGCRYYTKEFKG-RVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDEN 309
+L+++ G +G YTK + R KTK + T GAGDS+ S L L + +
Sbjct: 235 ELIVIKHGVEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFLYALISGKG------ 288
Query: 310 RLREALLFANACGALTVTERGAIPALPTKEAALKLLH 346
+ AL + +A ++ V++ + A P+ E L+
Sbjct: 289 -IETALKYGSASASIVVSKHSSSDAXPSVEEIEALIE 324
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 21/276 (7%)
Query: 77 SSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVT--LRADGEREFLFFR 134
S + + ++G+DEFG + + +DTS ++ D+ + T + F+ + E +++R
Sbjct: 49 SCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYR 108
Query: 135 HPSADMLLCESELDKNLIKQGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPN 193
SA L ++++N ++ + H I+L I++ + + A LAK S D N
Sbjct: 109 KGSAGSRLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTN 164
Query: 194 LRLPLWPSEEAAREGIMSIWDQADI---IKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 250
+R LW S E A+E I+SI + DI I DD L D D + K +
Sbjct: 165 IRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILL----DVTDPDEAYRKYKELGV 220
Query: 251 KLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENR 310
K+L+ GSKG Y K K D TGAGD+ ++ ++
Sbjct: 221 KVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFVSLYLQGKD------- 273
Query: 311 LREALLFANACGALTVTERGAIPALPTKEAALKLLH 346
+ +L A L +T RG PT E A + L+
Sbjct: 274 IEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLN 309
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 118/269 (43%), Gaps = 19/269 (7%)
Query: 73 RLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLR--ADGEREF 130
+ G + K+GDDEFGY L+ VD S ++ D +A T + F+ + E
Sbjct: 45 KQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSES 104
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
+++R SA L ++D+ +K + H I+L ST A+ A E S S+
Sbjct: 105 IYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITL---AISSTAKEAVYKAFEIASNRSF 161
Query: 191 DPNLRLPLWPSEEAARE--GIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHP 248
D N+RL LW +EEA RE ++S + +I +DD L G+ D K F
Sbjct: 162 DTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKIIL--GESDPDKAA---KAFSD 216
Query: 249 NLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDE 308
+++++ G KG Y K G + D TGAGD+ L +L
Sbjct: 217 YAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFL-------SLYYKG 269
Query: 309 NRLREALLFANACGALTVTERGAIPALPT 337
+ +AL +A L V RG LPT
Sbjct: 270 FEMEKALDYAIVASTLNVMIRGDQENLPT 298
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 123/310 (39%), Gaps = 19/310 (6%)
Query: 31 VVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEFG 90
VV GE L+ VP G L ++RLG FVG++G+DE G
Sbjct: 4 VVTAGEPLVALVPQEPG-HLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELG 62
Query: 91 YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKN 150
M+ L+ VD + R + T L G+ ++R SA L D +
Sbjct: 63 AMVEERLRAEGVDLTHFR-RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPD 121
Query: 151 LIKQGSIFHYGSISLIAEP-CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGI 209
++ H I+ P R+ L AM AK G +S D N R LW EE AR +
Sbjct: 122 YLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEE-ARGFL 180
Query: 210 MSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEF 269
D++ +S++E L G + L L P +++ G+KG +
Sbjct: 181 ERALPGVDLLFLSEEEAELLFGRVEE-----ALRALSAPE---VVLKRGAKGAWAFVDGR 232
Query: 270 KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTER 329
+ +AVD GAGD+F +G LA + E RLR AN GA R
Sbjct: 233 RVEGSAFAVEAVDPVGAGDAFAAG---YLAGAVWGLPVEERLR----LANLLGASVAASR 285
Query: 330 GAIPALPTKE 339
G P +E
Sbjct: 286 GDHEGAPYRE 295
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 118/273 (43%), Gaps = 17/273 (6%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADG-ERE 129
++RLG + +LG D G L +D S V D+T +T F DG +
Sbjct: 68 LARLGLKVGWASRLGTDSXGRYLLAAXAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPP 127
Query: 130 FLFFRHPSADMLLCESELDKNLIKQGSIFH-YGSISLIAEPCRSTQLAAMNLAKESGSIL 188
+ R SA +++D+ + H G I+ +L + +G +
Sbjct: 128 VEYHRKGSAASHXGVADIDEAWLLSARHLHATGVFPAISATTLPAARKTXDLXRAAGRSV 187
Query: 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHP 248
S+DPNLR LW + E R+ I + +AD + +E FLTG + + V F+
Sbjct: 188 SFDPNLRPTLWATPELXRDAINDLATRADWVLPGXEEGRFLTG--ETTPEGVA---RFYR 242
Query: 249 NL--KLLIVTEGSKGCRYYTKEFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAADQNLI 305
L KL++V G++G + + GRV G + VDT GAGD F G+++ L
Sbjct: 243 QLGAKLVVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALL------ 296
Query: 306 KDENRLREALLFANACGALTVTERGAIPALPTK 338
D + EA+ GA V G LPT+
Sbjct: 297 -DGLGVPEAVKRGAWIGARAVQVLGDSEGLPTR 328
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 18/313 (5%)
Query: 31 VVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEFG 90
V+ G + +D P GV L +R G +SA + ++G+D FG
Sbjct: 11 VLAIGRLGVDIYPLQSGVGLADVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFG 70
Query: 91 YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCES-ELDK 149
L L+ VD V D T +T + F + + F+R P A L ES ++
Sbjct: 71 EYLLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSL 130
Query: 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPS-EEAAREG 208
+ +++ I + EP R T + + +D + R W S EEA ++
Sbjct: 131 DDVREADILWFTLTGFSEEPSRGTHREILTTRANRRHTI-FDLDYRPXFWESPEEATKQA 189
Query: 209 IMSIWDQADIIKVSDDEITFLTGGDDHNDD--NVVLEKLFHPNLKLLIVTEGSKGCRYYT 266
++ Q + V + E + G+ + +LE+ ++L IV +G KG T
Sbjct: 190 EWAL--QHSTVAVGNKEECEIAVGETEPERAGRALLER----GVELAIVKQGPKGVXAXT 243
Query: 267 KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTV 326
K+ VP ++ GAGD+F + + L ++ L K L FAN GAL
Sbjct: 244 KDETVEVPPFFVDVINGLGAGDAFGGALCHGLLSEWPLEK-------VLRFANTAGALVA 296
Query: 327 TERGAIPALPTKE 339
+ A PT +
Sbjct: 297 SRLECSTAXPTTD 309
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 24/269 (8%)
Query: 73 RLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLF 132
R G + AF+ GDD G + L +N+D + V T +A + + +GE E +
Sbjct: 53 RSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV--NGEGENVI 110
Query: 133 FRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDP 192
H A+ L + ++ ++ I + ++ + E + +AA +A ++ +I++ +P
Sbjct: 111 GIHAGANAALSPALVEA---QRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNP 167
Query: 193 NLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVV--LEKLFHPNL 250
ARE + DII ++ E LTG ND++ + L +
Sbjct: 168 ----------APARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGI 217
Query: 251 KLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENR 310
+ +++T GS+G RVPG + +AVDT AGD+F ++ L +E
Sbjct: 218 RTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALL-------EEKP 270
Query: 311 LREALLFANACGALTVTERGAIPALPTKE 339
L EA+ FA+A A+ VT +GA P++P +E
Sbjct: 271 LPEAIRFAHAAAAIAVTRKGAQPSVPWRE 299
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 124/272 (45%), Gaps = 27/272 (9%)
Query: 72 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFL 131
+R+ + F+ K+G D + K ++DTS + + A+T AF+T+ A+G+
Sbjct: 51 ARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTI- 109
Query: 132 FFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYD 191
+ + A+M + ++ + + +I + + E ++A +AK G +
Sbjct: 110 -YVYGGANMTMTPEDV---INAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLN 165
Query: 192 PNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHND----DNVVLEKLFH 247
P P++ E ++S+ D II ++ E L+G N+ DN
Sbjct: 166 P------APAKALPNE-LLSLID---IIVPNETEAELLSGIKVTNEQSMKDNA--NYFLS 213
Query: 248 PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKD 307
+K +++T G +G + TK + K A+DTT AGD+F+ ++ L K
Sbjct: 214 IGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLN------KS 267
Query: 308 ENRLREALLFANACGALTVTERGAIPALPTKE 339
++ L +A+ F N +LTV + GA ++P E
Sbjct: 268 QDNLADAIDFGNKASSLTVQKHGAQASIPLLE 299
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 12/225 (5%)
Query: 80 FVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSAD 139
+V LG D F + NVDTS + L ++ + GER F ++R+ +A
Sbjct: 52 YVTALGTDSFSQQXLDAWHGENVDTSLTQRXENRLPGLYYIETDSTGERTFYYWRNEAAA 111
Query: 140 MLLCESELDKNLIKQGSIFHY-----GSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194
SE + ++ + F Y S+++++ R L+ + + G + +D N
Sbjct: 112 KFWLASEQSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNY 171
Query: 195 RLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLI 254
R LW S+E ++ + DI ++ D+ L G D V+ + + +K ++
Sbjct: 172 RPRLWASKEETQQVYQQXLECTDIAFLTLDDEDALWGQQPVED---VIARTHNAGVKEVV 228
Query: 255 VTEGSKGCRY-YTKEFKGRVPGV---KTKAVDTTGAGDSFVSGIL 295
V G+ C E VP V K K +DTT AGDSF +G L
Sbjct: 229 VKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYL 273
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 12/232 (5%)
Query: 79 AFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSA 138
++ +GDD + + +D G+R L +TL GER F ++R SA
Sbjct: 70 SYFSAIGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITLE-QGERSFAYWRGQSA 128
Query: 139 DM-LLCESELDKNLIKQGSIFHYGSISL-IAEPC-RSTQLAAMNLAKESGSILSYDPNLR 195
L +++ + + + ++ I+L I + C R+T L A+ A+ +G +++DPNLR
Sbjct: 129 ARELAGDADALAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLR 188
Query: 196 LPLWPSEEAAREGIMSIWDQADIIKVS--DDEITFLTGGDDHNDDNVVLEKLFHPNLKLL 253
LW E IM +DI S D+ F G D D + ++ +
Sbjct: 189 PRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDAGPDATAD-----RYARAGVRSV 243
Query: 254 IVTEGSKGCRYYTKEFKGR-VPGVKTKAVDTTGAGDSFVSGILNCLAADQNL 304
+V G + +GR + VDTT AGDSF +G+L+ + A Q L
Sbjct: 244 VVKNGPHAVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGLLDSVLAGQPL 295
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 21/278 (7%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
ISRLG +A ++G D G + + ++ N+D ++ D + T++ + DGER F
Sbjct: 53 ISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTF 112
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSI--SLIAEPCRSTQLAAMNLAKESGSIL 188
+ R+ S L + ++D Q + SI S + + T++ AK I+
Sbjct: 113 VTNRNGSLWKLNID-DVDFARFSQAKLLSLASIFNSPLLDGKALTEI--FTQAKARQXII 169
Query: 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHP 248
D + P + I D + + E LTG + ++ + +
Sbjct: 170 CAD-----XIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKETLDE---IADCFLAC 221
Query: 249 NLKLLIVTEGSKGCRYYTKEFKGRVPGVK-TKAVDTTGAGDSFVSGILNCLAADQNLIKD 307
+K +++ G GC + +VP V A+DT GAGD+F SG + L +N
Sbjct: 222 GVKTVVIKTGKDGCFIKRGDXTXKVPAVAGITAIDTIGAGDNFASGFIAALLEGKN---- 277
Query: 308 ENRLREALLFANACGALTVTERGAIPALPTKEAALKLL 345
LRE FANA A++V GA + ++ +LL
Sbjct: 278 ---LRECARFANATAAISVLSVGATTGVKNRKLVEQLL 312
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 35/278 (12%)
Query: 72 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFL 131
+RLG ++ V K+G D FG LK+N++ T A T A + + +G+ +
Sbjct: 72 ARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIV 131
Query: 132 FFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189
A++LL +L N+I + + + E +T L A+ +A+ SG
Sbjct: 132 IV--AGANLLLNTEDLRAAANVISRAKV-----MVCQLEITPATSLEALTMARRSGVKTL 184
Query: 190 YDPNLRLP-LWPSEEAAREGIMSIWDQADIIKVSDDEITFLTG-----GDDHNDDNVVLE 243
++P + L P + +D+ ++ E LTG D + +VL
Sbjct: 185 FNPAPAIADLDPQ----------FYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLL 234
Query: 244 KLFHPNLKLLIVTEGSKGCRYY--TKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 301
K +++I+T G++GC T+ +P K KAVDTTGAGDSFV + LA
Sbjct: 235 KR---GCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYY 291
Query: 302 QNLIKDENRLREALLFANACGALTVTERGAIPALPTKE 339
NL L + L +N A++V G + P K+
Sbjct: 292 PNL-----SLEDMLNRSNFIAAVSVQAAGTQSSYPYKK 324
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 23/273 (8%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
+S+ G S V +G+DE G + + KE + R D T VTL +G +
Sbjct: 34 VSQFGFDSRVVSAVGNDELGDEIXEVFKEKQLKNQIERVDYP--TGTVQVTLDDEGVPCY 91
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE-SGSILS 189
+ D + EL K L +GS++ E R+T ++ + G +
Sbjct: 92 EIKEGVAWDNIPFTDEL-KRLALNTRAVCFGSLAQRNEVSRATINRFLDTXPDIDGQLKI 150
Query: 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT-----FLTGGDDHNDDNVVLEK 244
+D NLR + ++E RE + + +I+K++D+E+ F G D D +L
Sbjct: 151 FDINLRQDFY-TKEVLRES----FKRCNILKINDEELVTISRXFGYPGIDLQDKCWIL-- 203
Query: 245 LFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNL 304
L NLK LI+T G G +T K DT GAGDSF + C +
Sbjct: 204 LAKYNLKXLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAF--CAS----- 256
Query: 305 IKDENRLREALLFANACGALTVTERGAIPALPT 337
I + + EA A A T+ GA P LP
Sbjct: 257 ILNGKSVPEAHKLAVEVSAYVCTQSGAXPELPV 289
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 118/275 (42%), Gaps = 40/275 (14%)
Query: 80 FVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSAD 139
FV +G+D++ +L ++ + T +R + T AF+ + G+ + F P A+
Sbjct: 71 FVTCIGNDDYSDLLIENYEKLGI-TGYIRV--SLPTGRAFIEVDKTGQNRIIIF--PGAN 125
Query: 140 MLLCESELDKNLIKQGSIFHYGSISLIAE-PCRSTQLAAMNLAKESGSILSYDPNLRLPL 198
+EL K LI ++ + L E P +T + AK I+ +DP
Sbjct: 126 -----AELKKELIDWNTLSESDILLLQNEIPFETT----LECAKRFNGIVIFDP------ 170
Query: 199 WPSEEAAREGI-MSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKL----L 253
A +GI I+ D + ++ EI L+ D + + +EK L+L +
Sbjct: 171 -----APAQGINEEIFQYLDYLTPNEKEIEALS--KDFFGEFLTVEKAAEKFLELGVKNV 223
Query: 254 IVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLRE 313
IV G KG K K P K KAVDTT AGD F L+ +N E
Sbjct: 224 IVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVALSEGKN-------PEE 276
Query: 314 ALLFANACGALTVTERGAIPALPTKEAALKLLHTV 348
A++F A A++VT GA ++P +E L +
Sbjct: 277 AVIFGTAAAAISVTRLGAQSSIPAREEVEAFLKNL 311
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKL 245
+++S+DP LP + ++E ++ I + + + ++ E + + D+ LE++
Sbjct: 155 NLVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNFEIDDY-LERV 208
Query: 246 FHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAADQNL 304
LIVT+GSKG YTK+ K +P +K K +D TGAGDS+ +G L+ +L
Sbjct: 209 -----DALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDL 263
Query: 305 IKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLL 345
K L A + V +G LPT + ++ L
Sbjct: 264 EK-------CGLIGAATASFVVEAKGCQTNLPTWDKVVERL 297
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 109/274 (39%), Gaps = 34/274 (12%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
+ R GG ++ G +GDDE G + L E+ +DTSG AR+AL+ + + GER
Sbjct: 76 VHRXGGRASLWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLI 135
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
+ P D L E K I + ++ L+ L + +A+ G
Sbjct: 136 V----PFYDHRLHEK---KRACTPEDIALFDAV-LVDVRWPELALDVLTVARALGKPAIL 187
Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 250
D ++ A E + + A I S+ T LTG + D VL + P
Sbjct: 188 DGDV---------APVETLEGLAPAATHIVFSEPAATRLTGLETVKDXLPVLHARY-PQ- 236
Query: 251 KLLIVTEGSKGCRYY-----TKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLI 305
+ VT G GC + T F+ + +AVDT AGD F G A+
Sbjct: 237 TFIAVTAGPAGCWWTEADDPTVHFQTT---XQVEAVDTLAAGDIF-HGTFALAXAEG--- 289
Query: 306 KDENRLREALLFANACGALTVTERGAIPALPTKE 339
+ R A+ ++ AL T G PT+E
Sbjct: 290 ---XQSRAAVRLSSVAAALKCTVFGGRIGAPTRE 320
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 123/333 (36%), Gaps = 38/333 (11%)
Query: 29 RLVVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDE 88
+ VV GE+L+ + T G+ +S+LG + + +
Sbjct: 25 KQVVTIGELLMR-LSTQQGIPFSQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANP 83
Query: 89 FGYMLANILKENNVDTSGV--------RYDSTARTALAFVTLRADGEREFLFFRHPSADM 140
G M L + VDT+ V Y + TAL ++ D + F RH S D
Sbjct: 84 IGKMAVEHLWRHQVDTAFVVEAGDRLGTYYLESGTALKAPSVVYDRQHSS-FARHKSMDW 142
Query: 141 LLCESELDKNLIKQGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLW 199
L E L+K + H I++ ++ + + AK +G +S+D N R LW
Sbjct: 143 DLSE------LLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLW 196
Query: 200 PSEEAAR--EGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTE 257
E A R + ++ + D ++ D + F + D + + PN++L T+
Sbjct: 197 ELEAAKRAYQQLLPLVDYCSAGQM--DAVAFFEISSETTDYYQAMHDKY-PNIELFYATK 253
Query: 258 GS---------KGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDE 308
+ +G + E VD G GD++ + +L+ I E
Sbjct: 254 RTVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGDAYTAAVLHG-------ILSE 306
Query: 309 NRLREALLFANACGALTVTERGAIPALPTKEAA 341
R E + FA A L + G I K A
Sbjct: 307 WRPDETVKFATAAAGLKHSIHGDINPFDEKTIA 339
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 21/232 (9%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
++ LGG +A+ GK+ DD+ G + + ++ V D TA + + + DGER
Sbjct: 70 VASLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFVTEDGERSX 129
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSI----SLIAEPCRSTQLAAMNLAKESGS 186
+ A + L +++ +++ Q + ++ + R A +E+
Sbjct: 130 NTYL--GACVELGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIREAARIAHAHGRETAX 187
Query: 187 ILSYDPNLRLPLWPSE--EAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEK 244
LS + + + SE E R G + DI+ + E L +D + LE
Sbjct: 188 TLS--DSFCVHRYRSEFLELXRSGTV------DIVFANRQEALALYETEDFDR---ALE- 235
Query: 245 LFHPNLKLLIVTEGSKGCRYYTKEFKGRV-PGVKTKAVDTTGAGDSFVSGIL 295
L + KL VT +G + RV V + VDTTGAGD + +G L
Sbjct: 236 LLARDCKLAAVTLSEEGSVVVRGAERVRVGASVLEQVVDTTGAGDLYAAGFL 287
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 203 EAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVV--LEKLFHPNLKLLIVTEGSK 260
E E + + + D+ V+D E L+G D N+V + K LI+ +G
Sbjct: 156 EGKPEELKKVLARVDVFIVNDSEARLLSG-----DPNLVKTARIIREXGPKTLIIKKGEH 210
Query: 261 GCRYYTKEFKGRVPGVKTKAV-DTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFAN 319
G +T P +++ D TGAGD+F G + LA N E R+A+L+ +
Sbjct: 211 GALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGN--TSEAEXRKAVLYGS 268
Query: 320 ACGALTVTERG 330
A + V + G
Sbjct: 269 AXASFCVEQFG 279
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 183 ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVL 242
++G +DP LPL+ R SI + A I V+D E + ++D +
Sbjct: 158 QAGVPFIFDPGQGLPLFDGATLRR----SI-ELATYIAVNDYEAKLVCDKTGWSEDEIA- 211
Query: 243 EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAAD 301
++ LI+T G G ++ ++P V+ + +D TG GD+F G+L
Sbjct: 212 -----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYG---- 262
Query: 302 QNLIKDENRLREALLFANACGALTVTERGAIPALPTK 338
I+ A A+ GAL + +G PT+
Sbjct: 263 ---IEHGFDWATAGRLASLMGALKIAHQGPQTYAPTR 296
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 183 ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVL 242
++G +DP LPL+ R SI + A I V+D E + ++D +
Sbjct: 166 QAGVPFIFDPGQGLPLFDGATLRR----SI-ELATYIAVNDYEAKLVCDKTGWSEDEIA- 219
Query: 243 EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAAD 301
++ LI+T G G ++ ++P V+ + +D TG GD+F G+L
Sbjct: 220 -----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYG---- 270
Query: 302 QNLIKDENRLREALLFANACGALTVTERGAIPALPTK 338
I+ A A+ GAL + +G PT+
Sbjct: 271 ---IEHGFDWATAGRLASLMGALKIAHQGPQTYAPTR 304
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 244 KLFHP-NLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSF 290
+L P +K L++T+G+ G + + P V +A+DTTGAGD+F
Sbjct: 189 ELLQPYGVKTLVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTF 236
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 253 LIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD--QNLIKDENR 310
++T G +G RY + VP VDT GAGD F +G+ LAA+ +N R
Sbjct: 213 FVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVF-AGV---LAANWPRNPGSPAER 268
Query: 311 LREALLFANACGAL 324
LR AL A A GAL
Sbjct: 269 LR-ALRRACAAGAL 281
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 26/250 (10%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTAR-TALAFVTLRADGERE 129
I + ++ F G +G D+FG +L E +VD + T A +T G+
Sbjct: 77 IQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACIT----GDNR 132
Query: 130 FLFFRHPSADMLLCESELD--KN--LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185
L +A+ E LD KN L+++ + + L P + L + A E+
Sbjct: 133 SLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSP--ESVLKVAHHASENN 190
Query: 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNV----- 240
I + NL P + +E +M + DI+ ++ E ++
Sbjct: 191 RIFTL--NLSAPFI--SQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAK 246
Query: 241 ---VLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGV---KTKAVDTTGAGDSFVSGI 294
L K+ +++I T+G T+ + + + +DT GAGD+FV G
Sbjct: 247 KTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGF 306
Query: 295 LNCLAADQNL 304
L+ L +D+ L
Sbjct: 307 LSQLVSDKPL 316
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 219 IKVSDDEITFLTGGDDHNDDNVVL--EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGV 276
IK + DE+ + ++D +V+ L + +IV+ G G Y KE +
Sbjct: 178 IKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVNP 237
Query: 277 KTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALT 325
+ K V+T G+GDS V+G++ +A+ ++ E ++A+ ACG T
Sbjct: 238 QGKVVNTVGSGDSTVAGMVAGIASGLSI---EKAFQQAV----ACGTAT 279
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 43/243 (17%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTAR-----TALAFVTLRAD 125
++ LGG +A+ G + D+ G + + ++ GV Y + + TA + + + D
Sbjct: 90 VANLGGKAAYFGNVAADQLGDIFTH-----DIRAQGVHYQTKPKGAFPPTARSXIFVTED 144
Query: 126 GEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQ--LAAMNLAKE 183
GER + A + L +++ +++ + ++ + +P R+ + L +A +
Sbjct: 145 GERSXNTYL--GACVELGPEDVEADVVADAKVTYFEG--YLWDPPRAKEAILDCARIAHQ 200
Query: 184 SGSILS--YDPNLRLPLWPSE--EAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDN 239
G S + + + E + R G + DI+ + E L DD +
Sbjct: 201 HGREXSXTLSDSFCVDRYRGEFLDLXRSG------KVDIVFANRQEALSLYQTDDFEE-- 252
Query: 240 VVLEKLFHPNLKLLIVTEGSKGC-------RYYTKEFKGRVPGVKTKAVDTTGAGDSFVS 292
L ++ + K+ VT G RYY + R + VDTTGAGD F S
Sbjct: 253 -ALNRI-AADCKIAAVTXSENGAVILKGRERYYVNAIRIR------EVVDTTGAGDLFAS 304
Query: 293 GIL 295
G L
Sbjct: 305 GFL 307
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 239 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTKA-VDTTGAGD 288
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKAVTPGVQTDVGAHAESNAQ 312
Query: 289 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 332
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 333 PALPTKEAAL 342
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 281 VDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEA 340
+D GAGD++ +GIL + + +L K A+ FA G L T +G IP K+
Sbjct: 273 LDRIGAGDAYAAGILYGYSQNWSLEK-------AVTFATVNGVLAHTIQGDIPLTTVKQV 325
Query: 341 ALKLLH 346
L H
Sbjct: 326 NHVLEH 331
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGE-RE 129
+++ G + FV KL ++ G A L++ V T + R + F+ + A +
Sbjct: 54 LAQXGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGN-RIGIYFLEIGASQRPSK 112
Query: 130 FLFFRHPSADMLLCESELDKNLIKQGS-IFHYGSISLIAEPCRSTQLA-----AMNLAKE 183
++ R SA + D I G+ FH+ I+ P +L A+ +A E
Sbjct: 113 VVYDRAHSAISEAKREDFDWEKILDGARWFHFSGIT----PPLGKELPLILEDALKVANE 168
Query: 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTG 231
G +S D N R LW EEA + I + D++ ++++I + G
Sbjct: 169 KGVTVSCDLNYRARLWTKEEAQKVXI-PFXEYVDVLIANEEDIEKVLG 215
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 239 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTKA-VDTTGAGD 288
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQ 312
Query: 289 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 332
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 333 PALPTKEAAL 342
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 239 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTKA-VDTTGAGD 288
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQ 312
Query: 289 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 332
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 333 PALPTKEAAL 342
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 239 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTKA-VDTTGAGD 288
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQ 312
Query: 289 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 332
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 333 PALPTKEAAL 342
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 29/237 (12%)
Query: 77 SSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHP 136
++ F G +G DE+ +L N V+ V+Y +A + + G + L
Sbjct: 99 TAIFFGCVGQDEYARILEERATSNGVN---VQYQRSATSPTGTCAVLVTGTQRSLCANLA 155
Query: 137 SADMLLCE---SELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDP 192
+A+ E S+ ++ + QG+ F Y S S A+++AKE+ + +
Sbjct: 156 AANDFTPEHLRSDGNRAYL-QGAQFFYVSGFFFTVSFES----ALSVAKEAAATGRMFMM 210
Query: 193 NLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT-----FLTGGDDHNDDNVVLEKLFH 247
NL P P + + + I+ D++ ++ E F G +D + + L
Sbjct: 211 NLSAPFVP--QFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPK 268
Query: 248 PNLK---LLIVTEGSKGCRYY------TKEFKGRVPGVKTKAVDTTGAGDSFVSGIL 295
N K ++I+T+GS +EF + + + VDT GAGD+FV G L
Sbjct: 269 ENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPE-QMVDTNGAGDAFVGGFL 324
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 279 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 321
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 329 KIVDTNGAGDAFVGGFLYALSQGKT-------VKQCIMCGNAC 364
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 279 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 321
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 309 KIVDTNGAGDAFVGGFLYALSQGKT-------VKQCIMCGNAC 344
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 204 AAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDN-VVLEKLFHPNLKLLIVTEGSKGC 262
AA + +S+ ++ ++V + LT G + VV+ + +P + +G+
Sbjct: 238 AAEKVALSVANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVV 297
Query: 263 RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 321
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 298 HEVGVPVVA-----AEKIVDTNGAGDAFVGGFLYGLSQGKT-------VKQCIMCGNAC 344
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 279 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 321
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 309 KIVDTNGAGDAFVGGFLYGLSQGKT-------VKQCIMCGNAC 344
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
+ RLG + +G LG Y+ N L++ + S + + R + ++ G++E
Sbjct: 46 LKRLGHETKALGFLGGFTGAYV-RNALEKEEIGLSFIEVEGDTR-----INVKIKGKQET 99
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPC-----RSTQLAAMNLAKESG 185
+ L + E + L++Q + G + ++A ++ + +AKE G
Sbjct: 100 EL----NGTAPLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAXPQTIYRSXTQIAKERG 155
Query: 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVV--LE 243
+ ++ D S EA E + + + IK + E++ L + ++ + ++
Sbjct: 156 AFVAVDT--------SGEALHEVLAA---KPSFIKPNHHELSELVSKPIASIEDAIPHVQ 204
Query: 244 KLFHPNLKLLIVTEGSKGCRYYTKE--FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 301
+L ++ ++V+ G + + E F VP + + ++ GAGDS V+G L L
Sbjct: 205 RLIGEGIESILVSFAGDGALFASAEGXFHVNVPSGEVR--NSVGAGDSVVAGFLAAL--- 259
Query: 302 QNLIKDENRLREALLFANACGALT 325
++ L +A+ FA A G+ T
Sbjct: 260 ----QEGKSLEDAVPFAVAAGSAT 279
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 103/282 (36%), Gaps = 60/282 (21%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
I+ LGGS+ + G G L ++L + NV + V R L V + A GE+
Sbjct: 48 IAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNL-HVHVEASGEQ-- 103
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSIL-- 188
+R L E E QL L ESG+IL
Sbjct: 104 --YRFVMPGAALNEDEF-------------------------RQLEEQVLEIESGAILVI 136
Query: 189 --SYDPNLRLPLWPS--EEAAREGIMSIWDQA-------------DIIKVSDDEITFLTG 231
S P ++L A ++GI I D + +++K + E++ L
Sbjct: 137 SGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELVKPNQKELSALVN 196
Query: 232 GDDHNDDNV---VLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGD 288
+ D+V E + K ++V+ G +G E +V K+ T GAGD
Sbjct: 197 RELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGD 256
Query: 289 SFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 330
S V + LA + + L E + F A G+ +G
Sbjct: 257 SMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQG 291
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 103/282 (36%), Gaps = 60/282 (21%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
I+ LGGS+ + G G L ++L + NV + V R L V + A GE+
Sbjct: 48 IAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNL-HVHVEASGEQ-- 103
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSIL-- 188
+R L E E QL L ESG+IL
Sbjct: 104 --YRFVMPGAALNEDEFR-------------------------QLEEQVLEIESGAILVI 136
Query: 189 --SYDPNLRLPLWPS--EEAAREGIMSIWDQA-------------DIIKVSDDEITFLTG 231
S P ++L A ++GI I D + +++K + E++ L
Sbjct: 137 SGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELVKPNQKELSALVN 196
Query: 232 GDDHNDDNV---VLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGD 288
+ D+V E + K ++V+ G +G E +V K+ T GAGD
Sbjct: 197 RELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGD 256
Query: 289 SFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 330
S V + LA + + L E + F A G+ +G
Sbjct: 257 SMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQG 291
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 254 IVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIK 306
IVT G +G + K P + + DT GAGDSF +G+ L +++ K
Sbjct: 213 IVTNGERGSSLFXDGKKYDFPAIPSSG-DTVGAGDSFRAGLYLALYNRRSIEK 264
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 204 AAREGIMSIWDQADIIKVSDD------------EITFLTGGDDHNDDNVVLEKLFHPNLK 251
A R+ I+ +W A + + D EI TGG DD + +P++
Sbjct: 414 AQRDSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVD 473
Query: 252 LLIVTEGSKGCRYYTKEFKGRVPGVK 277
L+ + G +YT +KG P ++
Sbjct: 474 LVDERWNTSGVPWYTLYYKGNYPRLQ 499
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 249 NLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDE 308
++ L++T +G ++ + P + + D +GAGD+ ++ + L A L+
Sbjct: 267 DIDALLLTRSEEGMTLFSAGGELHAPALAREVFDVSGAGDTVIATVATMLGAGVPLV--- 323
Query: 309 NRLREALLFANACGALTVTERG 330
+A++ AN + V + G
Sbjct: 324 ----DAVVLANRAAGIVVGKLG 341
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
Length = 357
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 283 TTGAGDSFVSGILNCLAADQNLIKDENRLREALLFAN 319
++G D+FVSGILN + A+ + ++N ++ LF N
Sbjct: 75 SSGLSDAFVSGILNEIKANDE-VYNKNYKKDDFLFTN 110
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 92/242 (38%), Gaps = 33/242 (13%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
I LGG A VG G D Y + LK V+ V TA TA T D +
Sbjct: 67 IGVLGGEVALVGAAGADFADYR--DWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIA 124
Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES----GS 186
F+ P A + E+ +N+ + G L+ + AM L E G
Sbjct: 125 SFY--PGA---MSEA---RNIKLADVVSAIGKPELVIIGANDPE--AMFLHTEECRKLGL 174
Query: 187 ILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLF 246
+ DP+ +L EE R + + A + +D E L ++ +V+ +
Sbjct: 175 AFAADPSQQLARLSGEEIRR-----LVNGAAYLFTNDYEWDLLLSKTGWSEADVMAQ--- 226
Query: 247 HPNLKLLIVTEGSKGCRYY----TKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ 302
+ L + T G KG T G VP +T D TG GD+F +G L +A
Sbjct: 227 ---IDLRVTTLGPKGVDLVEPDGTTIHVGVVP--ETSQTDPTGVGDAFRAGFLTGRSAGL 281
Query: 303 NL 304
L
Sbjct: 282 GL 283
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 11/155 (7%)
Query: 71 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTL-RADGERE 129
+S LG AF+G + + + L+ +VD + +T +A V + A G R
Sbjct: 50 LSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRT 109
Query: 130 FLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189
L++ D + ++ +K + Q H R+ L +
Sbjct: 110 ILYYDRSLPD--VSATDFEKVDLTQFKWIHIEG--------RNASEQVKMLQRIDAHNTR 159
Query: 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDD 224
P ++ + E RE + ++ D++ VS D
Sbjct: 160 QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKD 194
>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
Length = 352
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 249 NLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDE 308
++ L++T +G ++ + P + + D +GAGD+ ++ + L A L+
Sbjct: 267 DIDALLLTRSEEGXTLFSAGGELHAPALAREVFDVSGAGDTVIATVATXLGAGVPLV--- 323
Query: 309 NRLREALLFANACGALTVTERG 330
+A++ AN + V + G
Sbjct: 324 ----DAVVLANRAAGIVVGKLG 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,789,666
Number of Sequences: 62578
Number of extensions: 383509
Number of successful extensions: 949
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 65
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)