Query 018696
Match_columns 351
No_of_seqs 152 out of 1703
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02323 probable fructokinase 100.0 1.3E-50 2.8E-55 372.1 36.3 322 24-347 6-327 (330)
2 PLN02543 pfkB-type carbohydrat 100.0 2.7E-48 5.8E-53 366.1 35.0 321 27-348 124-490 (496)
3 PLN02967 kinase 100.0 6.7E-48 1.5E-52 366.3 34.9 317 27-344 195-544 (581)
4 PTZ00292 ribokinase; Provision 100.0 1.4E-46 3.1E-51 344.8 32.4 306 22-346 9-325 (326)
5 PRK11142 ribokinase; Provision 100.0 1.4E-46 3E-51 342.1 31.8 293 30-346 4-304 (306)
6 PLN02813 pfkB-type carbohydrat 100.0 5.2E-46 1.1E-50 348.9 35.3 318 17-349 58-409 (426)
7 PRK09434 aminoimidazole ribosi 100.0 7.1E-46 1.5E-50 337.1 32.0 299 30-341 4-303 (304)
8 PLN02341 pfkB-type carbohydrat 100.0 2.5E-45 5.4E-50 349.1 33.7 313 25-349 69-411 (470)
9 cd01166 KdgK 2-keto-3-deoxyglu 100.0 6E-45 1.3E-49 329.5 33.2 292 30-331 1-293 (294)
10 cd01167 bac_FRK Fructokinases 100.0 3.7E-45 8E-50 331.1 31.3 287 30-331 1-294 (295)
11 KOG2855 Ribokinase [Carbohydra 100.0 2.5E-45 5.4E-50 320.5 28.3 314 27-347 8-326 (330)
12 cd01168 adenosine_kinase Adeno 100.0 1.2E-44 2.6E-49 330.1 29.0 288 29-333 2-311 (312)
13 COG0524 RbsK Sugar kinases, ri 100.0 5.1E-44 1.1E-48 325.9 32.7 302 30-348 1-310 (311)
14 cd01174 ribokinase Ribokinase 100.0 3.6E-44 7.8E-49 324.1 31.2 284 30-337 1-292 (292)
15 PRK09850 pseudouridine kinase; 100.0 2.7E-43 5.8E-48 321.1 31.4 298 27-347 3-308 (313)
16 cd01944 YegV_kinase_like YegV- 100.0 2.8E-43 6E-48 317.8 30.7 283 30-330 1-289 (289)
17 cd01945 ribokinase_group_B Rib 100.0 1.2E-42 2.5E-47 313.0 29.4 279 30-337 1-284 (284)
18 PTZ00247 adenosine kinase; Pro 100.0 8E-43 1.7E-47 322.0 28.3 290 26-332 3-335 (345)
19 PRK15074 inosine/guanosine kin 100.0 1.2E-42 2.5E-47 324.0 28.7 306 25-340 30-425 (434)
20 PF00294 PfkB: pfkB family car 100.0 1.5E-43 3.3E-48 321.3 22.0 292 29-337 2-300 (301)
21 PLN02379 pfkB-type carbohydrat 100.0 6.9E-42 1.5E-46 316.2 32.3 302 23-346 14-353 (367)
22 cd01942 ribokinase_group_A Rib 100.0 5.7E-42 1.2E-46 307.7 29.0 270 30-331 1-278 (279)
23 TIGR02152 D_ribokin_bact ribok 100.0 1.8E-41 4E-46 306.6 29.5 285 35-342 1-293 (293)
24 PRK09954 putative kinase; Prov 100.0 3.5E-41 7.6E-46 312.9 31.4 297 27-346 56-360 (362)
25 cd01947 Guanosine_kinase_like 100.0 1.3E-40 2.8E-45 296.6 29.0 260 30-331 1-264 (265)
26 TIGR03828 pfkB 1-phosphofructo 100.0 2.7E-40 5.8E-45 300.5 29.8 289 33-349 4-303 (304)
27 cd01940 Fructoselysine_kinase_ 100.0 4.5E-40 9.7E-45 293.1 30.0 263 30-331 1-263 (264)
28 TIGR02198 rfaE_dom_I rfaE bifu 100.0 1.8E-40 4E-45 303.1 27.6 292 27-345 6-314 (315)
29 PRK13508 tagatose-6-phosphate 100.0 7.5E-40 1.6E-44 298.0 29.8 292 30-349 2-305 (309)
30 cd01939 Ketohexokinase Ketohex 100.0 7.4E-40 1.6E-44 295.5 27.8 274 31-331 2-289 (290)
31 cd01172 RfaE_like RfaE encodes 100.0 4.8E-40 1E-44 298.8 26.5 280 30-335 1-298 (304)
32 PRK09513 fruK 1-phosphofructok 100.0 3.9E-39 8.6E-44 293.7 30.6 294 28-349 3-307 (312)
33 TIGR01231 lacC tagatose-6-phos 100.0 2.8E-39 6E-44 294.3 27.6 294 31-349 2-305 (309)
34 PRK09813 fructoselysine 6-kina 100.0 4.4E-39 9.6E-44 285.9 27.3 259 29-331 1-259 (260)
35 cd01941 YeiC_kinase_like YeiC- 100.0 3.7E-39 7.9E-44 290.8 26.9 276 31-328 2-288 (288)
36 cd01943 MAK32 MAK32 kinase. M 100.0 1.3E-39 2.8E-44 297.7 23.9 278 30-331 1-304 (328)
37 TIGR03168 1-PFK hexose kinase, 100.0 1.1E-38 2.4E-43 289.7 29.4 285 36-348 7-302 (303)
38 PRK10294 6-phosphofructokinase 100.0 1.1E-38 2.4E-43 290.3 28.9 294 30-349 4-308 (309)
39 cd01164 FruK_PfkB_like 1-phosp 100.0 2.9E-38 6.4E-43 285.0 28.0 275 30-331 2-288 (289)
40 PRK11316 bifunctional heptose 100.0 1.2E-37 2.7E-42 299.1 27.9 291 28-347 10-314 (473)
41 PLN02548 adenosine kinase 100.0 3.5E-37 7.7E-42 283.2 28.4 263 53-332 44-324 (332)
42 COG1105 FruK Fructose-1-phosph 100.0 1.7E-36 3.7E-41 265.3 27.9 291 31-349 3-305 (310)
43 PLN02630 pfkB-type carbohydrat 100.0 4.9E-36 1.1E-40 272.7 29.6 273 27-349 10-293 (335)
44 cd01937 ribokinase_group_D Rib 100.0 5.6E-36 1.2E-40 265.1 25.7 254 30-327 1-254 (254)
45 cd01946 ribokinase_group_C Rib 100.0 1.7E-35 3.8E-40 265.3 25.8 272 31-332 2-276 (277)
46 KOG2854 Possible pfkB family c 100.0 1.8E-32 3.8E-37 236.7 19.9 285 31-332 9-335 (343)
47 COG2870 RfaE ADP-heptose synth 100.0 2.1E-31 4.6E-36 234.8 24.5 287 28-343 10-309 (467)
48 KOG2947 Carbohydrate kinase [C 100.0 9.2E-28 2E-32 197.7 21.5 279 28-331 4-298 (308)
49 cd00287 ribokinase_pfkB_like r 100.0 5.6E-28 1.2E-32 205.4 20.6 189 30-299 1-196 (196)
50 PRK12413 phosphomethylpyrimidi 99.8 4.2E-19 9.2E-24 156.9 17.3 225 77-329 3-243 (253)
51 cd01173 pyridoxal_pyridoxamine 99.8 7.1E-19 1.5E-23 155.6 17.5 167 153-328 71-251 (254)
52 PRK12412 pyridoxal kinase; Rev 99.8 3E-18 6.6E-23 152.4 20.6 226 79-328 3-246 (268)
53 PRK05756 pyridoxamine kinase; 99.8 2.3E-18 4.9E-23 154.9 17.7 168 152-328 72-255 (286)
54 TIGR00097 HMP-P_kinase phospho 99.8 4.6E-18 1E-22 150.2 18.2 163 154-329 67-241 (254)
55 PRK07105 pyridoxamine kinase; 99.8 5.2E-18 1.1E-22 152.4 17.1 166 154-329 75-256 (284)
56 cd01169 HMPP_kinase 4-amino-5- 99.8 1.2E-17 2.6E-22 146.7 18.6 163 154-328 68-241 (242)
57 TIGR00687 pyridox_kin pyridoxa 99.8 5.3E-18 1.2E-22 152.5 16.6 167 152-328 72-256 (286)
58 PRK06427 bifunctional hydroxy- 99.8 2E-17 4.3E-22 147.3 18.4 163 154-329 73-249 (266)
59 PRK08176 pdxK pyridoxal-pyrido 99.8 3.1E-17 6.8E-22 146.8 17.1 166 152-328 86-266 (281)
60 PRK08573 phosphomethylpyrimidi 99.7 7.5E-17 1.6E-21 153.2 18.9 151 170-328 82-244 (448)
61 PRK12616 pyridoxal kinase; Rev 99.7 1.3E-16 2.9E-21 142.0 17.6 163 154-328 74-249 (270)
62 PTZ00344 pyridoxal kinase; Pro 99.7 3.5E-15 7.6E-20 134.6 17.4 163 154-328 77-258 (296)
63 KOG3009 Predicted carbohydrate 99.6 4.7E-15 1E-19 133.3 15.3 234 31-329 343-601 (614)
64 PLN02898 HMP-P kinase/thiamin- 99.6 2.9E-14 6.4E-19 137.7 18.0 164 154-329 78-254 (502)
65 PTZ00347 phosphomethylpyrimidi 99.6 3.1E-14 6.6E-19 137.7 17.0 149 171-328 311-478 (504)
66 PLN02978 pyridoxal kinase 99.6 1.4E-13 2.9E-18 124.7 19.8 163 155-328 87-267 (308)
67 COG0351 ThiD Hydroxymethylpyri 99.5 1.6E-12 3.5E-17 111.9 20.6 162 154-327 72-244 (263)
68 PF08543 Phos_pyr_kin: Phospho 99.5 2.4E-13 5.2E-18 119.3 15.3 163 154-328 60-234 (246)
69 PRK14713 multifunctional hydro 99.5 4.2E-13 9E-18 130.3 16.6 159 155-326 99-270 (530)
70 PRK09517 multifunctional thiam 99.5 6.9E-13 1.5E-17 133.5 16.5 161 155-329 311-485 (755)
71 cd01171 YXKO-related B.subtili 99.5 2.2E-12 4.9E-17 114.0 15.5 160 151-329 74-236 (254)
72 cd01170 THZ_kinase 4-methyl-5- 99.4 6E-12 1.3E-16 109.9 16.6 165 149-327 44-221 (242)
73 TIGR00196 yjeF_cterm yjeF C-te 99.4 3.7E-11 8.1E-16 107.2 18.5 174 151-347 89-268 (272)
74 COG2240 PdxK Pyridoxal/pyridox 99.3 1E-10 2.2E-15 101.3 15.7 167 151-328 70-250 (281)
75 PTZ00493 phosphomethylpyrimidi 99.3 6.7E-10 1.4E-14 99.8 20.0 162 155-328 74-285 (321)
76 PRK09355 hydroxyethylthiazole 99.1 5.4E-09 1.2E-13 92.6 17.3 163 150-326 50-224 (263)
77 TIGR00694 thiM hydroxyethylthi 99.0 1.6E-08 3.5E-13 88.8 16.0 162 151-326 46-219 (249)
78 KOG2598 Phosphomethylpyrimidin 98.6 8.6E-07 1.9E-11 80.3 14.1 164 154-328 92-283 (523)
79 KOG2599 Pyridoxal/pyridoxine/p 98.6 1.8E-06 3.8E-11 73.7 13.1 160 152-319 79-254 (308)
80 TIGR02045 P_fruct_ADP ADP-spec 98.2 8.2E-05 1.8E-09 69.5 16.0 76 151-230 206-291 (446)
81 PRK03979 ADP-specific phosphof 98.2 6.5E-05 1.4E-09 70.5 15.2 164 57-230 98-305 (463)
82 PRK14039 ADP-dependent glucoki 98.1 0.00015 3.3E-09 67.9 16.8 194 56-257 86-331 (453)
83 PF02110 HK: Hydroxyethylthiaz 97.9 0.0014 3.1E-08 56.8 16.2 157 151-321 46-214 (246)
84 PRK14038 ADP-dependent glucoki 97.8 0.0029 6.3E-08 59.4 17.7 147 151-345 221-387 (453)
85 PRK10565 putative carbohydrate 97.7 0.0014 3E-08 63.6 15.9 146 152-321 318-468 (508)
86 PF04587 ADP_PFK_GK: ADP-speci 97.6 0.00046 1E-08 65.6 11.0 163 59-231 93-292 (444)
87 PF01256 Carb_kinase: Carbohyd 97.6 0.0055 1.2E-07 53.5 15.6 168 150-345 63-240 (242)
88 COG2145 ThiM Hydroxyethylthiaz 97.5 0.0088 1.9E-07 51.6 15.2 143 152-303 55-209 (265)
89 cd01938 ADPGK_ADPPFK ADP-depen 97.2 0.0035 7.6E-08 59.3 11.1 163 56-230 101-285 (445)
90 KOG3974 Predicted sugar kinase 96.9 0.015 3.3E-07 49.9 11.1 166 149-328 96-267 (306)
91 COG0063 Predicted sugar kinase 96.6 0.1 2.3E-06 46.5 14.6 172 151-346 98-278 (284)
92 KOG4184 Predicted sugar kinase 93.2 0.24 5.1E-06 44.6 6.0 161 55-231 137-317 (478)
93 COG4809 Archaeal ADP-dependent 90.3 15 0.00033 34.0 15.3 77 151-231 222-308 (466)
94 COG0269 SgbH 3-hexulose-6-phos 77.3 38 0.00082 28.9 10.0 95 152-258 78-172 (217)
95 PRK10076 pyruvate formate lyas 72.7 39 0.00085 28.8 9.3 73 171-252 53-130 (213)
96 COG0206 FtsZ Cell division GTP 65.1 35 0.00076 31.4 7.8 150 60-229 19-173 (338)
97 PF00070 Pyr_redox: Pyridine n 62.4 20 0.00042 24.9 4.7 42 64-105 11-58 (80)
98 COG1180 PflA Pyruvate-formate 58.3 1.3E+02 0.0029 26.5 11.5 88 154-252 83-175 (260)
99 PF13986 DUF4224: Domain of un 52.0 16 0.00036 22.8 2.4 32 220-254 2-33 (47)
100 COG0136 Asd Aspartate-semialde 50.7 1.7E+02 0.0036 27.0 9.5 97 76-194 2-98 (334)
101 PRK09330 cell division protein 50.5 1.3E+02 0.0028 28.3 9.1 144 58-220 19-164 (384)
102 PRK15452 putative protease; Pr 49.5 1E+02 0.0022 29.6 8.5 83 144-227 13-102 (443)
103 PRK06732 phosphopantothenate-- 49.2 26 0.00056 30.3 4.1 47 29-82 1-47 (229)
104 TIGR00065 ftsZ cell division p 45.7 1.7E+02 0.0038 27.1 9.1 143 58-221 23-169 (349)
105 COG0547 TrpD Anthranilate phos 45.1 2.5E+02 0.0055 25.9 11.1 190 66-328 96-304 (338)
106 PF01118 Semialdhyde_dh: Semia 44.1 66 0.0014 24.4 5.3 42 147-196 59-100 (121)
107 PHA00438 hypothetical protein 43.4 21 0.00045 24.8 2.0 18 282-299 45-62 (81)
108 COG1433 Uncharacterized conser 43.3 40 0.00087 25.9 3.8 43 57-104 47-89 (121)
109 PRK05866 short chain dehydroge 42.0 1.2E+02 0.0025 27.1 7.4 24 60-83 49-72 (293)
110 COG0826 Collagenase and relate 41.8 2.3E+02 0.005 26.3 9.3 79 152-231 24-108 (347)
111 PRK13018 cell division protein 39.5 2E+02 0.0044 27.0 8.6 144 58-221 34-180 (378)
112 TIGR02114 coaB_strep phosphopa 39.2 43 0.00093 28.9 3.9 25 58-82 22-46 (227)
113 TIGR00696 wecB_tagA_cpsF bacte 38.6 2.2E+02 0.0049 23.4 8.1 77 171-259 34-110 (177)
114 PRK06702 O-acetylhomoserine am 38.3 2.5E+02 0.0055 26.9 9.3 42 174-224 166-207 (432)
115 PF01212 Beta_elim_lyase: Beta 38.1 51 0.0011 29.6 4.4 81 140-223 104-193 (290)
116 PF10911 DUF2717: Protein of u 37.8 28 0.0006 24.1 1.9 20 281-300 44-63 (77)
117 COG3684 LacD Tagatose-1,6-bisp 36.7 1.1E+02 0.0023 27.0 5.7 142 172-349 147-301 (306)
118 COG2873 MET17 O-acetylhomoseri 36.4 58 0.0013 30.3 4.3 41 67-108 93-133 (426)
119 COG3845 ABC-type uncharacteriz 36.4 1.3E+02 0.0028 29.2 6.8 81 171-257 115-198 (501)
120 PF13344 Hydrolase_6: Haloacid 36.0 1.1E+02 0.0025 22.3 5.3 39 65-104 20-58 (101)
121 cd02201 FtsZ_type1 FtsZ is a G 35.8 2.6E+02 0.0056 25.3 8.6 29 59-87 7-35 (304)
122 PRK14039 ADP-dependent glucoki 35.7 28 0.0006 33.4 2.3 31 269-299 416-447 (453)
123 COG2117 Predicted subunit of t 34.8 1E+02 0.0022 25.1 4.9 50 58-107 6-57 (198)
124 COG0144 Sun tRNA and rRNA cyto 34.7 3.8E+02 0.0082 24.9 9.9 48 54-104 161-209 (355)
125 KOG0053 Cystathionine beta-lya 34.4 1.8E+02 0.0039 27.6 7.3 24 174-197 181-204 (409)
126 PF10678 DUF2492: Protein of u 33.7 98 0.0021 21.7 4.2 35 67-101 26-60 (78)
127 PF03853 YjeF_N: YjeF-related 33.5 46 0.001 27.1 3.1 44 59-102 36-82 (169)
128 COG1922 WecG Teichoic acid bio 33.1 2.1E+02 0.0045 25.2 7.1 100 149-259 59-171 (253)
129 PRK13397 3-deoxy-7-phosphohept 32.6 2.1E+02 0.0046 25.1 7.1 80 171-261 65-162 (250)
130 cd00562 NifX_NifB This CD repr 32.4 81 0.0018 22.7 4.1 39 61-104 47-85 (102)
131 PRK08133 O-succinylhomoserine 32.4 2.1E+02 0.0046 26.8 7.8 21 174-194 165-185 (390)
132 PRK06728 aspartate-semialdehyd 30.9 4.3E+02 0.0092 24.5 9.2 94 75-194 5-100 (347)
133 COG3107 LppC Putative lipoprot 30.4 65 0.0014 31.4 3.8 79 170-259 304-394 (604)
134 TIGR03609 S_layer_CsaB polysac 30.2 3.7E+02 0.008 23.9 8.7 71 149-221 59-133 (298)
135 PRK05579 bifunctional phosphop 30.0 83 0.0018 29.8 4.5 49 27-82 187-235 (399)
136 PRK06901 aspartate-semialdehyd 30.0 3.7E+02 0.0081 24.6 8.4 91 77-193 5-95 (322)
137 COG1646 Predicted phosphate-bi 29.3 2.4E+02 0.0053 24.4 6.7 66 150-232 37-107 (240)
138 PLN02383 aspartate semialdehyd 28.6 3E+02 0.0065 25.4 7.8 96 73-194 5-101 (344)
139 TIGR03853 matur_matur probable 28.4 1.3E+02 0.0029 21.0 4.1 36 67-102 24-59 (77)
140 cd05014 SIS_Kpsf KpsF-like pro 28.1 1.7E+02 0.0036 22.0 5.4 41 237-277 62-102 (128)
141 PRK09620 hypothetical protein; 27.8 1.1E+02 0.0025 26.3 4.7 50 28-84 3-52 (229)
142 COG0626 MetC Cystathionine bet 27.7 2.2E+02 0.0049 26.9 6.9 54 53-107 78-133 (396)
143 TIGR02494 PFLE_PFLC glycyl-rad 26.9 4.5E+02 0.0098 23.3 9.2 72 171-251 140-216 (295)
144 TIGR01745 asd_gamma aspartate- 26.5 2.7E+02 0.0058 26.1 7.0 94 77-194 2-98 (366)
145 PLN03050 pyridoxine (pyridoxam 26.5 1.8E+02 0.0039 25.4 5.7 23 60-82 72-94 (246)
146 TIGR00334 5S_RNA_mat_M5 ribonu 26.2 3.6E+02 0.0079 22.2 7.0 64 154-227 22-85 (174)
147 PRK07121 hypothetical protein; 25.8 1.2E+02 0.0026 29.5 5.0 24 60-83 28-51 (492)
148 PF04127 DFP: DNA / pantothena 25.7 95 0.0021 25.8 3.7 49 29-84 4-52 (185)
149 PF02579 Nitro_FeMo-Co: Dinitr 25.6 60 0.0013 23.0 2.2 42 58-104 36-77 (94)
150 TIGR00521 coaBC_dfp phosphopan 24.9 1.1E+02 0.0025 28.8 4.5 50 27-83 184-233 (390)
151 PF13808 DDE_Tnp_1_assoc: DDE_ 24.9 2.6E+02 0.0057 19.9 6.9 56 287-349 22-77 (90)
152 PRK13982 bifunctional SbtC-lik 24.6 1.2E+02 0.0027 29.4 4.7 49 27-82 255-303 (475)
153 TIGR02826 RNR_activ_nrdG3 anae 24.6 2.9E+02 0.0064 21.9 6.2 57 156-225 63-119 (147)
154 TIGR00444 mazG MazG family pro 24.4 2.9E+02 0.0064 24.2 6.6 55 286-347 185-246 (248)
155 PRK06598 aspartate-semialdehyd 24.2 4.9E+02 0.011 24.4 8.4 94 77-194 3-99 (369)
156 PF10087 DUF2325: Uncharacteri 24.2 1.7E+02 0.0037 21.1 4.5 41 149-193 43-83 (97)
157 PRK01438 murD UDP-N-acetylmura 24.2 1.1E+02 0.0023 29.7 4.3 45 59-104 23-67 (480)
158 PRK06249 2-dehydropantoate 2-r 24.2 1.3E+02 0.0028 27.2 4.6 24 60-83 13-36 (313)
159 COG1794 RacX Aspartate racemas 23.8 4E+02 0.0086 23.0 7.0 90 175-268 106-207 (230)
160 PRK14106 murD UDP-N-acetylmura 23.3 3.5E+02 0.0075 25.8 7.6 43 60-103 13-55 (450)
161 TIGR01328 met_gam_lyase methio 23.1 3.3E+02 0.0072 25.5 7.3 41 154-195 144-184 (391)
162 cd00614 CGS_like CGS_like: Cys 23.1 3.5E+02 0.0076 25.0 7.4 21 174-194 144-164 (369)
163 PRK05671 aspartate-semialdehyd 22.9 5.4E+02 0.012 23.7 8.4 94 76-194 5-98 (336)
164 PF11469 Ribonucleas_3_2: Ribo 22.6 1.3E+02 0.0028 22.3 3.3 31 281-317 53-83 (120)
165 PRK08247 cystathionine gamma-s 22.5 5.7E+02 0.012 23.6 8.7 40 154-194 136-175 (366)
166 PF09702 Cas_Csa5: CRISPR-asso 22.4 70 0.0015 23.6 2.0 18 332-349 69-86 (105)
167 cd02191 FtsZ FtsZ is a GTPase 22.2 5.9E+02 0.013 23.0 8.5 28 59-87 7-35 (303)
168 cd00851 MTH1175 This uncharact 22.0 1.5E+02 0.0033 21.3 3.9 39 61-104 49-87 (103)
169 TIGR01329 cysta_beta_ly_E cyst 21.8 4.1E+02 0.009 24.7 7.6 40 154-194 131-170 (378)
170 COG0111 SerA Phosphoglycerate 21.8 1.5E+02 0.0032 27.2 4.5 78 173-260 153-235 (324)
171 PF12091 DUF3567: Protein of u 21.4 56 0.0012 23.3 1.2 46 279-349 30-75 (85)
172 PRK09028 cystathionine beta-ly 21.4 5.2E+02 0.011 24.4 8.2 41 154-195 146-186 (394)
173 TIGR01831 fabG_rel 3-oxoacyl-( 21.4 1.6E+02 0.0034 24.9 4.5 42 60-102 7-48 (239)
174 PRK05967 cystathionine beta-ly 21.2 7E+02 0.015 23.5 9.8 41 154-195 149-189 (395)
175 COG1058 CinA Predicted nucleot 21.2 2.6E+02 0.0056 24.7 5.6 36 62-99 21-56 (255)
176 PRK04169 geranylgeranylglycery 21.1 3.3E+02 0.0072 23.6 6.2 42 151-195 29-70 (232)
177 PRK08249 cystathionine gamma-s 20.9 3.6E+02 0.0078 25.4 7.1 41 154-195 149-189 (398)
178 KOG2865 NADH:ubiquinone oxidor 20.9 3.5E+02 0.0076 24.5 6.3 139 75-223 61-213 (391)
179 PRK08641 sdhA succinate dehydr 20.6 1.3E+02 0.0029 30.0 4.3 23 60-82 11-33 (589)
180 PF03808 Glyco_tran_WecB: Glyc 20.4 3.8E+02 0.0083 21.7 6.3 20 172-191 35-54 (172)
181 KOG4777 Aspartate-semialdehyde 20.4 3.4E+02 0.0074 24.0 5.9 97 80-191 9-107 (361)
182 PF00919 UPF0004: Uncharacteri 20.4 3.5E+02 0.0076 19.7 5.7 61 152-220 34-97 (98)
183 PRK03673 hypothetical protein; 20.1 3E+02 0.0066 26.0 6.2 49 62-112 21-69 (396)
No 1
>PLN02323 probable fructokinase
Probab=100.00 E-value=1.3e-50 Score=372.06 Aligned_cols=322 Identities=78% Similarity=1.238 Sum_probs=278.4
Q ss_pred CCCCCceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCC
Q 018696 24 SGAYDRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (351)
Q Consensus 24 ~~~~~~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid 103 (351)
+..++++|+++|++++|+++..++.+......+...+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 6 ~~~~~~~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~ 85 (330)
T PLN02323 6 STAESSLVVCFGEMLIDFVPTVSGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGVN 85 (330)
T ss_pred ccCCCCcEEEechhhhhhccCCCCCCcccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCCC
Confidence 44577889999999999999887777655667789999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHH
Q 018696 104 TSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (351)
Q Consensus 104 ~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 183 (351)
++++.+.++.+|+.+++.++++|+|++.+++.++++..+++++++.+.++.++++|++++....+........+++.+++
T Consensus 86 ~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 165 (330)
T PLN02323 86 NEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKE 165 (330)
T ss_pred CcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHHHHHHHHHHHHHH
Confidence 99999999889999999888889999888765666667888888777789999999988765555455667788999999
Q ss_pred cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceE
Q 018696 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCR 263 (351)
Q Consensus 184 ~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 263 (351)
.|.++++||+.+...|.+.+..++.+.++++++|++++|++|+..+++....+... +. +++..|++.||||+|++|++
T Consensus 166 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~-~~-~~~~~g~~~vvvt~G~~G~~ 243 (330)
T PLN02323 166 AGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDT-VV-KLWHPNLKLLLVTEGEEGCR 243 (330)
T ss_pred cCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHH-HH-HHHhcCCCEEEEecCCCceE
Confidence 99999999998888887777778888999999999999999999999875443222 33 45567999999999999999
Q ss_pred EEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHH
Q 018696 264 YYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALK 343 (351)
Q Consensus 264 ~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~ 343 (351)
++.+++.+++|+++++++|||||||+|.|||++++++|++...+..++++|+++|+++|++++++.|+.+++|+.+++++
T Consensus 244 ~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v~~ 323 (330)
T PLN02323 244 YYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKEAVLK 323 (330)
T ss_pred EEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHHHH
Confidence 99888778899999999999999999999999999999752112234899999999999999999999888899999999
Q ss_pred HHhh
Q 018696 344 LLHT 347 (351)
Q Consensus 344 ~l~~ 347 (351)
++++
T Consensus 324 ~l~~ 327 (330)
T PLN02323 324 LLKK 327 (330)
T ss_pred HHHH
Confidence 8865
No 2
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.7e-48 Score=366.07 Aligned_cols=321 Identities=37% Similarity=0.622 Sum_probs=262.3
Q ss_pred CCceEEEEccceeecccCCCCCCCC--------------CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHH
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVSLA--------------EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYM 92 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~~~--------------~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~ 92 (351)
-++.|+++|++.||++......... ....+...+||++.|+|.+|++||.++.++|.||+|.+|++
T Consensus 124 ~~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~ 203 (496)
T PLN02543 124 DPPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEE 203 (496)
T ss_pred CCCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHH
Confidence 4567999999999999864321110 34567899999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCeeecCCCCCeEEEEEEe-cCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhH
Q 018696 93 LANILKENNVDTSGVRYDSTARTALAFVTLR-ADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 171 (351)
Q Consensus 93 i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 171 (351)
+++.|++.|||++++.+.++.+|+.+++.++ .++.+.+.+++..+++..+.+++++...+++++++|++++.+..+...
T Consensus 204 l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh~~~~~l~~~~~~ 283 (496)
T PLN02543 204 LVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNLAVLKEARMFHFNSEVLTSPSMQ 283 (496)
T ss_pred HHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCHhHhCCCceEEECChhhcCchHH
Confidence 9999999999999999999999999988874 233366654455677777888888878899999999999876666667
Q ss_pred HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCC--------CC-------
Q 018696 172 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD--------HN------- 236 (351)
Q Consensus 172 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~--------~~------- 236 (351)
+....+++.+++.|+.|+|||+.+..+|.+.+...+.+.++++++|++++|++|++.+++... .+
T Consensus 284 ~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~ 363 (496)
T PLN02543 284 STLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFE 363 (496)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhh
Confidence 888999999999999999999999999988888888899999999999999999999998541 11
Q ss_pred -----------hhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCc-----ccccccCCCCchHHHHHHHHHHHh
Q 018696 237 -----------DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGV-----KTKAVDTTGAGDSFVSGILNCLAA 300 (351)
Q Consensus 237 -----------~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~-----~~~~vd~tGaGD~f~ag~~~~l~~ 300 (351)
... .+..+...|++.||||+|++|++++.++....++.. +..+||||||||+|.|||+++|++
T Consensus 364 ~~~~~~~~~~~~~~-~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGAGDAF~AGfL~~Ll~ 442 (496)
T PLN02543 364 QTKNWRDYYHYTPE-EIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGSGDAVVAAIMRKLTT 442 (496)
T ss_pred hhhcccccccCCHH-HHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCchHHHHHHHHHHHHHh
Confidence 112 245677789999999999999999876422222111 112489999999999999999996
Q ss_pred cCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHHHHhhh
Q 018696 301 DQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLLHTV 348 (351)
Q Consensus 301 g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~l~~~ 348 (351)
+.....++.++++|+++|+++||+++++.|+.+++|+.+++++|++++
T Consensus 443 ~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~ 490 (496)
T PLN02543 443 CPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQV 490 (496)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhh
Confidence 221000112299999999999999999999999999999999999875
No 3
>PLN02967 kinase
Probab=100.00 E-value=6.7e-48 Score=366.29 Aligned_cols=317 Identities=33% Similarity=0.572 Sum_probs=264.2
Q ss_pred CCceEEEEccceeecccCCCCCC--------------CCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHH
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVS--------------LAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYM 92 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~--------------~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~ 92 (351)
.++.|++||.+.+|++....... ..+...+...+||++.|+|.+|++||.++.++|.||+|.+|++
T Consensus 195 ~~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ 274 (581)
T PLN02967 195 WPPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQA 274 (581)
T ss_pred CCCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHH
Confidence 45679999999999976421110 0134567888999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHH
Q 018696 93 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRS 172 (351)
Q Consensus 93 i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (351)
+++.|++.||+++++...++.+|+.+++.++.+|++++. ++.++++..+..+++....+.+++++|++++.+..+...+
T Consensus 275 ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~-~~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~ 353 (581)
T PLN02967 275 MLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTT-CVKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRS 353 (581)
T ss_pred HHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEE-EecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHH
Confidence 999999999999999998889999999999999987775 4457788888888887778899999999998766666778
Q ss_pred HHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCCh--------------h
Q 018696 173 TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHND--------------D 238 (351)
Q Consensus 173 ~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~--------------~ 238 (351)
.+..+++.+++.|++++|||+++.++|.+.+.+.+.+.++++++|||++|++|+..+++..+.++ .
T Consensus 354 all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~ 433 (581)
T PLN02967 354 TTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYS 433 (581)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccch
Confidence 89999999999999999999999999987777788889999999999999999999998543110 1
Q ss_pred HHHHHHHhcCCCeEEEEeeCCcceEEEecCc---eeeecCcccc--cccCCCCchHHHHHHHHHHHhcCCcccchHHHHH
Q 018696 239 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKEF---KGRVPGVKTK--AVDTTGAGDSFVSGILNCLAADQNLIKDENRLRE 313 (351)
Q Consensus 239 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~---~~~v~~~~~~--~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~ 313 (351)
...++.+...|++.||||+|++|++++.+++ ...+++++++ +||||||||+|.|||+++|++|.....+..++++
T Consensus 434 ~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~Lee 513 (581)
T PLN02967 434 PEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEK 513 (581)
T ss_pred HHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCcccccccHHH
Confidence 1245567777999999999999999988754 3345556666 5999999999999999999985110000123999
Q ss_pred HHHHHHHHHhHHhcccCCCCCCCCHHHHHHH
Q 018696 314 ALLFANACGALTVTERGAIPALPTKEAALKL 344 (351)
Q Consensus 314 a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~ 344 (351)
|+++|+++||++++..|+.+++|+.++|++-
T Consensus 514 aLrfAnAaAAL~vt~~GA~~glPt~~eV~~~ 544 (581)
T PLN02967 514 TIKYAIDCGVIDQWLLARTRGFPPKEDMEDE 544 (581)
T ss_pred HHHHHHHHHHHHhccCCCccCCCCHHHHhhh
Confidence 9999999999999999999999999999753
No 4
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=1.4e-46 Score=344.80 Aligned_cols=306 Identities=29% Similarity=0.369 Sum_probs=257.3
Q ss_pred CCCCCCCceEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHH
Q 018696 22 GGSGAYDRLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANIL 97 (351)
Q Consensus 22 ~~~~~~~~~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l 97 (351)
++.+..+++|+|+|.+++|+++.++..+.. ....+...+||.+.|+|.+|++||.++.++|.+|+|.+|+.+++.|
T Consensus 9 ~~~~~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l 88 (326)
T PTZ00292 9 SHGGEAEPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNF 88 (326)
T ss_pred cccCCCCCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHH
Confidence 345566778999999999999988876554 2445678899999999999999999999999999999999999999
Q ss_pred HHCCCCCCCeeecCCCCCeEEEEEEe-cCCCceEEEecCCcccccCCccccch--hhhcC-ccEEEEccccccCchhHHH
Q 018696 98 KENNVDTSGVRYDSTARTALAFVTLR-ADGEREFLFFRHPSADMLLCESELDK--NLIKQ-GSIFHYGSISLIAEPCRST 173 (351)
Q Consensus 98 ~~~gid~~~v~~~~~~~t~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~i~~--~~i~~-~~~~~~~~~~~~~~~~~~~ 173 (351)
++.||+++++...++.+|++++++++ .+|++.+.++ ++++..++++.++. ..+.. ++++++++ ..+.+.
T Consensus 89 ~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~ 161 (326)
T PTZ00292 89 KRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVII--PGANNALTPQMVDAQTDNIQNICKYLICQN-----EIPLET 161 (326)
T ss_pred HHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEe--CCccccCCHHHHHHHHHHhhhhCCEEEECC-----CCCHHH
Confidence 99999999998888889999999988 7888888776 45555677766542 34566 78887654 224467
Q ss_pred HHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCC--CChhHHHHHHHhcCCCe
Q 018696 174 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD--HNDDNVVLEKLFHPNLK 251 (351)
Q Consensus 174 ~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~--~~~~~~~~~~l~~~g~~ 251 (351)
..++++.+++.+.++++|++.+...|. .+.+.++++++|++++|++|++.+++... .++...+++.+.+.|++
T Consensus 162 ~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~ 236 (326)
T PTZ00292 162 TLDALKEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVE 236 (326)
T ss_pred HHHHHHHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCC
Confidence 778899999999999999986543321 25677888999999999999999988653 23334456778888999
Q ss_pred EEEEeeCCcceEEEecCc-eeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccC
Q 018696 252 LLIVTEGSKGCRYYTKEF-KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 330 (351)
Q Consensus 252 ~vvvt~G~~G~~~~~~~~-~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g 330 (351)
.||||+|++|++++.+++ .+++|+++++++|+|||||+|+|||++++++|++ +++|+++|+++|++++++.|
T Consensus 237 ~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~a~Aa~~v~~~G 309 (326)
T PTZ00292 237 NVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKD-------LKESCKRANRIAAISVTRHG 309 (326)
T ss_pred eEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCCC
Confidence 999999999999988764 5889999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCCHHHHHHHHh
Q 018696 331 AIPALPTKEAALKLLH 346 (351)
Q Consensus 331 ~~~~~~~~~~v~~~l~ 346 (351)
+..++|+.+++++.++
T Consensus 310 ~~~~~~~~~~~~~~~~ 325 (326)
T PTZ00292 310 TQSSYPHPSELPADVK 325 (326)
T ss_pred ccccCCCHHHHHHHhc
Confidence 9888899999988765
No 5
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=1.4e-46 Score=342.08 Aligned_cols=293 Identities=28% Similarity=0.391 Sum_probs=252.6
Q ss_pred eEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~ 105 (351)
+|+++|++++|+++.++..|.. ....++..+||++.|+|++|++||.++.++|.+|+|.+|+.+++.|+++||+++
T Consensus 4 ~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~ 83 (306)
T PRK11142 4 KLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGIDTA 83 (306)
T ss_pred cEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCChh
Confidence 6999999999999988877553 244678889999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc--hhhhcCccEEEEccccccCchhHHHHHHHHHHHHH
Q 018696 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (351)
Q Consensus 106 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 183 (351)
++...++.+|+.++++++.+|++.+.++ ++....+++++++ .+.+.+++++|++.. .+.+.+.++++.+++
T Consensus 84 ~i~~~~~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~~~~~~~~~a~~ 156 (306)
T PRK11142 84 PVSVIKGESTGVALIFVNDEGENSIGIH--AGANAALTPALVEAHRELIANADALLMQLE-----TPLETVLAAAKIAKQ 156 (306)
T ss_pred hEEEcCCCCCCEEEEEECCCCCEEEEEe--CCccccCCHHHHHHHHhhhccCCEEEEeCC-----CCHHHHHHHHHHHHH
Confidence 9988889999999999888899888776 4455557776664 255889999988642 245677788999999
Q ss_pred cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcc
Q 018696 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKG 261 (351)
Q Consensus 184 ~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G 261 (351)
++.++++|++.... ....+++++|++++|++|++.+++.... ++..+.++.+.+.|++.+|||+|++|
T Consensus 157 ~g~~v~~d~~~~~~----------~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 226 (306)
T PRK11142 157 HGTKVILNPAPARE----------LPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRG 226 (306)
T ss_pred cCCEEEEECCCCcc----------cCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCCc
Confidence 99999999974322 1245778999999999999999986432 23344667788889999999999999
Q ss_pred eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHH
Q 018696 262 CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAA 341 (351)
Q Consensus 262 ~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v 341 (351)
++++.+++.+++|+++++++|||||||+|.|||++++++|++ +++|+++|+++|+.++++.|+.+++|+.+++
T Consensus 227 ~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~ 299 (306)
T PRK11142 227 VWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKP-------LPEAIRFAHAAAAIAVTRKGAQPSIPWREEI 299 (306)
T ss_pred EEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCCcccccCCCHHHH
Confidence 999888888899999999999999999999999999999999 9999999999999999999998888999999
Q ss_pred HHHHh
Q 018696 342 LKLLH 346 (351)
Q Consensus 342 ~~~l~ 346 (351)
+++++
T Consensus 300 ~~~~~ 304 (306)
T PRK11142 300 DAFLQ 304 (306)
T ss_pred HHHHh
Confidence 98876
No 6
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=5.2e-46 Score=348.92 Aligned_cols=318 Identities=20% Similarity=0.217 Sum_probs=262.9
Q ss_pred ccccCCCCCCCCceEEEEccceeecccCCCC-------CCCCC-----------------CCCccccCCChHHHHHHHHH
Q 018696 17 SASMDGGSGAYDRLVVCFGEMLIDFVPTVGG-------VSLAE-----------------APAFKKAPGGAPANVAVGIS 72 (351)
Q Consensus 17 ~~~~~~~~~~~~~~i~v~G~~~iD~~~~~~~-------~~~~~-----------------~~~~~~~~GG~~~n~a~~l~ 72 (351)
..+++....+++++|+++|++++|++..++. .|+.. ...+...+||++.|+|++|+
T Consensus 58 ~~~~~~~~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~Avala 137 (426)
T PLN02813 58 FGPIPEKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALA 137 (426)
T ss_pred cCCCCcccCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHH
Confidence 3455555667889999999999999998887 56432 23467889999999999999
Q ss_pred HcC--------CCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCc
Q 018696 73 RLG--------GSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCE 144 (351)
Q Consensus 73 ~lG--------~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 144 (351)
+|| .+|.++|.+|+|.+|+++++.|++.||++.++.+ .+.+|++++++++++|+|++..+. +++..++.
T Consensus 138 rLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii~~~--Ga~~~l~~ 214 (426)
T PLN02813 138 RLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQRTMLSYQ--GTSSTVNY 214 (426)
T ss_pred HhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCceeeecc--CchhhCCc
Confidence 999 7999999999999999999999999999998764 456899999999999999988874 45555666
Q ss_pred cccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHH-HHHHhhhcCcEEEeCH
Q 018696 145 SELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAARE-GIMSIWDQADIIKVSD 223 (351)
Q Consensus 145 ~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~-~~~~~l~~~dvl~~N~ 223 (351)
+++....+++++++|+.++.+..+...+.+.++++.+++.|+++++|+..... ...+++ .+..+++++|++++|+
T Consensus 215 ~~~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~----~~~~~~~l~~~ll~~vDil~~Ne 290 (426)
T PLN02813 215 DSCLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSC----IERHRDDFWDVMGNYADILFANS 290 (426)
T ss_pred cccCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcch----hhhhHHHHHHHHHhcCCEEEeCH
Confidence 66666778999999998865433333467888999999999999999863210 111222 3344568999999999
Q ss_pred HHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC-
Q 018696 224 DEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ- 302 (351)
Q Consensus 224 ~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~- 302 (351)
+|+..+++....+....+++.| ..+++.||||+|++|++++.+++.+++|+++++++|||||||+|.|||++++++|+
T Consensus 291 ~Ea~~l~g~~~~~~~~~a~~~L-~~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~G~~ 369 (426)
T PLN02813 291 DEARALCGLGSEESPESATRYL-SHFCPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLRGVS 369 (426)
T ss_pred HHHHHHhCCCCCCCHHHHHHHH-HcCCCEEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHcCCC
Confidence 9999999865444444455555 46889999999999999998888999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHHHHhhhc
Q 018696 303 NLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLLHTVA 349 (351)
Q Consensus 303 ~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~l~~~~ 349 (351)
+ +++|+++|+++|+.++++.|+...+|+.+++.+.++++.
T Consensus 370 ~-------l~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~~ 409 (426)
T PLN02813 370 D-------LRGMGELAARVAATVVGQQGTRLRVEDAVELAESFALHL 409 (426)
T ss_pred C-------HHHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHHh
Confidence 8 999999999999999999999988899999999888764
No 7
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=7.1e-46 Score=337.06 Aligned_cols=299 Identities=41% Similarity=0.672 Sum_probs=254.7
Q ss_pred eEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~ 109 (351)
+|+++|++++|++.... ......+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|+++||+++++..
T Consensus 4 ~il~iG~~~iD~~~~~~-------~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~ 76 (304)
T PRK09434 4 KVWVLGDAVVDLIPEGE-------NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRL 76 (304)
T ss_pred cEEEecchheeeecCCC-------CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCCCcceEE
Confidence 79999999999985321 23567899999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEE
Q 018696 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189 (351)
Q Consensus 110 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~ 189 (351)
.++.+|+.+++.++++|+|++.++..++++..++.++++ .+++++++|++++....+...+...++++.+++.+.+++
T Consensus 77 ~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (304)
T PRK09434 77 DPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVS 154 (304)
T ss_pred cCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCEEE
Confidence 888999999999888888887666555555455555543 367899999988765555555677789999999999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhc-CCCeEEEEeeCCcceEEEecC
Q 018696 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFH-PNLKLLIVTEGSKGCRYYTKE 268 (351)
Q Consensus 190 ~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~ 268 (351)
+|++.+...|...+.+++.+.++++++|++++|++|+..+++..+ ..++++++.+ .|++.+|||+|++|++++.++
T Consensus 155 ~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~---~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~ 231 (304)
T PRK09434 155 FDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQ---LEDAIYALADRYPIALLLVTLGAEGVLVHTRG 231 (304)
T ss_pred ECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCC---HHHHHHHHHhhcCCcEEEEEecCCceEEEeCC
Confidence 999987777877777788888999999999999999999988643 3346677766 789999999999999999888
Q ss_pred ceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHH
Q 018696 269 FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAA 341 (351)
Q Consensus 269 ~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v 341 (351)
+.+++|+++++++|||||||+|+|||++++++|++. .+..++++|+++|+++|++++++.|+..++|+.+++
T Consensus 232 ~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~-~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~ 303 (304)
T PRK09434 232 QVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLW-TDEAELAEIIAQAQACGALATTAKGAMTALPNRQEL 303 (304)
T ss_pred ceeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCc-cchHHHHHHHHHHHHHHHHHHcccCCcCCCCChHHc
Confidence 889999999999999999999999999999999731 122349999999999999999999998888888765
No 8
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.5e-45 Score=349.14 Aligned_cols=313 Identities=25% Similarity=0.333 Sum_probs=255.9
Q ss_pred CCCCceEEEEccceeecccCCCCCCCCCC---------------CCccccCCChHHHHHHHHHHcCCCeEEEeecCCChH
Q 018696 25 GAYDRLVVCFGEMLIDFVPTVGGVSLAEA---------------PAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEF 89 (351)
Q Consensus 25 ~~~~~~i~v~G~~~iD~~~~~~~~~~~~~---------------~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~ 89 (351)
..++++|+++|++++|+++.++..|.... .......|| +.|+|.+|++||.+|.++|.+|+|.+
T Consensus 69 ~~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~ 147 (470)
T PLN02341 69 AGKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIY 147 (470)
T ss_pred ccccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHH
Confidence 35678999999999999999988876431 234456788 58999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCeeecC--------CCCCeEEEEEEecCCCceEEEecCCccccc---CC-ccccchhhhcCccE
Q 018696 90 GYMLANILKENNVDTSGVRYDS--------TARTALAFVTLRADGEREFLFFRHPSADML---LC-ESELDKNLIKQGSI 157 (351)
Q Consensus 90 g~~i~~~l~~~gid~~~v~~~~--------~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~---~~-~~~i~~~~i~~~~~ 157 (351)
|+++++.|++.||+++++...+ ..+|+.++++++++|++.+....+...... +. ........++++++
T Consensus 148 G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adi 227 (470)
T PLN02341 148 GKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKA 227 (470)
T ss_pred HHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCE
Confidence 9999999999999999887665 357999999999888876543211111100 00 00111346889999
Q ss_pred EEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCC-CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCC
Q 018696 158 FHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL-PLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN 236 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~-~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~ 236 (351)
+|++++.. .+.+.+.+..+++.+++.|.++++||+.+. .+|...+...+.+.++++++|++++|++|++.+++..+.
T Consensus 228 v~lsg~~~-~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~- 305 (470)
T PLN02341 228 LFCNGYVF-DELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNP- 305 (470)
T ss_pred EEEeceeC-CcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCH-
Confidence 99998753 234567888999999999999999998764 344444455667888999999999999999999986432
Q ss_pred hhHHHHHHHhcCC--CeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHH
Q 018696 237 DDNVVLEKLFHPN--LKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREA 314 (351)
Q Consensus 237 ~~~~~~~~l~~~g--~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a 314 (351)
.+.++.+.+.| .+.||||+|++|++++.+++.+++|+++++++|||||||+|.|||++++++|++ +++|
T Consensus 306 --~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll~G~~-------l~ea 376 (470)
T PLN02341 306 --ILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYIHNLP-------LVNT 376 (470)
T ss_pred --HHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHHcCCC-------HHHH
Confidence 33567777766 579999999999999999888999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhHHhcccCCCCCCCCHHHHHHHHhhhc
Q 018696 315 LLFANACGALTVTERGAIPALPTKEAALKLLHTVA 349 (351)
Q Consensus 315 ~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~l~~~~ 349 (351)
+++|+++|+++++..|+...+|+.++++++|++..
T Consensus 377 l~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~ 411 (470)
T PLN02341 377 LTLANAVGAATAMGCGAGRNVATLEKVLELLRASN 411 (470)
T ss_pred HHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcC
Confidence 99999999999999999989999999999997543
No 9
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=6e-45 Score=329.49 Aligned_cols=292 Identities=39% Similarity=0.569 Sum_probs=249.5
Q ss_pred eEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~ 109 (351)
+|+|+|++++|++...++.. .........+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+
T Consensus 1 ~i~~iG~~~iD~~~~~~~~~-~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~ 79 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGGRL-EQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTSHVRV 79 (294)
T ss_pred CeEEechhheeeecCCCCcc-chhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCCCceEEE
Confidence 48999999999998766433 34556788999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEcccccc-CchhHHHHHHHHHHHHHcCCeE
Q 018696 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLI-AEPCRSTQLAAMNLAKESGSIL 188 (351)
Q Consensus 110 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~v 188 (351)
.++.+|+.+++.++.+|+|++.+++...+...++.++++...+++++++|+++.... .+...+.+.++++.+++.+.++
T Consensus 80 ~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (294)
T cd01166 80 DPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESAREALLEALEAAKARGVTV 159 (294)
T ss_pred eCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEE
Confidence 889999999999888888888877655555567777776667899999999886432 2222477888999999999999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecC
Q 018696 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKE 268 (351)
Q Consensus 189 ~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 268 (351)
++||+....+| +.+...+.+..+++++|++++|+.|++.+++....++..+.++++ +.|++.|+||.|++|++++.++
T Consensus 160 ~~D~~~~~~~~-~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l-~~g~~~viit~G~~G~~~~~~~ 237 (294)
T cd01166 160 SFDLNYRPKLW-SAEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERALAL-ALGVKAVVVKLGAEGALVYTGG 237 (294)
T ss_pred EECCCCcchhc-ChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHHHHHhh-cCCccEEEEEEcCCceEEEECC
Confidence 99998655443 334455667788999999999999999999876544444455566 7899999999999999999888
Q ss_pred ceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 269 FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 269 ~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
+.+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|+.++++.|+
T Consensus 238 ~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 238 GRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWD-------LEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred ceEEeCCCCcccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999 999999999999999999985
No 10
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=3.7e-45 Score=331.06 Aligned_cols=287 Identities=53% Similarity=0.878 Sum_probs=246.2
Q ss_pred eEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~ 109 (351)
+|+|+|++++|++...+.. +......+||++.|+|.++++||.+|.++|.+|+|.+|+.+++.|++.||++.++.+
T Consensus 1 ~ilviG~~~~D~~~~~~~~----~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~ 76 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA----PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTRGIQF 76 (295)
T ss_pred CEEEEcceeEEEecCCCCC----CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCCchheee
Confidence 5899999999999876543 445678999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEE
Q 018696 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189 (351)
Q Consensus 110 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~ 189 (351)
.++.+|++++++++.+|+|++.+++..........+ +..+.+++++++|++++.+.++...+...++++.+++.+.+++
T Consensus 77 ~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 155 (295)
T cd01167 77 DPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTE-LNPDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLIS 155 (295)
T ss_pred cCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCcc-CChhHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEE
Confidence 888899999999988898888876433322112221 3456788999999988655555556778889999999999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCc
Q 018696 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEF 269 (351)
Q Consensus 190 ~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 269 (351)
+||+.+..+|.......+.+.++++++|++++|++|+..+++....+ ..++.+.+.|++.+|||+|++|++++.+++
T Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~---~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 232 (295)
T cd01167 156 FDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPE---EIAALLLLFGLKLVLVTRGADGALLYTKGG 232 (295)
T ss_pred EcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHH---HHHHHHhhcCCCEEEEecCCcceEEEECCc
Confidence 99987766666555567778889999999999999999998865433 245678889999999999999999999888
Q ss_pred eeeecCcccccccCCCCchHHHHHHHHHHHhcC-------CcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 270 KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ-------NLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 270 ~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~-------~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
.+++|+++++++|||||||+|+|||+++|++|+ + +++|+++|+++|+.++++.|+
T Consensus 233 ~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~-------~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 233 VGEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDE-------LAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred ceeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcccccHHH-------HHHHHHHHHHhhHHHhcccCC
Confidence 899999999999999999999999999999999 8 999999999999999999885
No 11
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-45 Score=320.47 Aligned_cols=314 Identities=56% Similarity=0.881 Sum_probs=280.0
Q ss_pred CCceEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCC
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNV 102 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gi 102 (351)
.++.|+++|++.+|++...++.|.. .+..+...+||++.|+|.+++|||.++.++|.||+|.+|+.+.+.|++.||
T Consensus 8 ~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~V 87 (330)
T KOG2855|consen 8 EPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNGV 87 (330)
T ss_pred CCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCCc
Confidence 5667999999999999999999887 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHH
Q 018696 103 DTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK 182 (351)
Q Consensus 103 d~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 182 (351)
+++++....+.+|+..++.+..+|++.+.+++++..+......++..+.++.+.++|+..-..............++.++
T Consensus 88 ~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~ 167 (330)
T KOG2855|consen 88 DTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAVKVAK 167 (330)
T ss_pred ccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHHHHhhhhhhh
Confidence 99999999999999999999999999999997777776666667778899999999998877776666666666677888
Q ss_pred HcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcce
Q 018696 183 ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGC 262 (351)
Q Consensus 183 ~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~ 262 (351)
+.+..+.+||+.+.++|...+..+..+..++..+|++..+.+|+..++|..+. + .. +|+..+.+.||||+|++|+
T Consensus 168 ~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~-~---~~-~L~~~~~k~viVTlG~kG~ 242 (330)
T KOG2855|consen 168 NAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDD-K---IL-KLWHMKLKLVIVTLGEKGC 242 (330)
T ss_pred cccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccc-h---HH-HHhccCCCEEEEEeCCCce
Confidence 88888999999999999988777777888999999999999999999988322 2 23 7888888999999999999
Q ss_pred EEEecCcee-eecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHH
Q 018696 263 RYYTKEFKG-RVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAA 341 (351)
Q Consensus 263 ~~~~~~~~~-~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v 341 (351)
.+++++..- ++|++.+++||||||||+|.|||+..|.+| ++.- ...+++++++|++|+++++++.|+.+.+|..+++
T Consensus 243 ~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~~-~~~~-~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~ 320 (330)
T KOG2855|consen 243 RYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLVRG-SLLP-ELSLEEALRFANACGAITVQRKGAIPSMPTEKEV 320 (330)
T ss_pred EEEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHhhc-cccc-hHHHHHHHHHHHHhhhHHhhccCCCccCccHHHH
Confidence 999988544 999999999999999999999999999999 3221 4558999999999999999999999999999999
Q ss_pred HHHHhh
Q 018696 342 LKLLHT 347 (351)
Q Consensus 342 ~~~l~~ 347 (351)
++.+..
T Consensus 321 ~~~~~~ 326 (330)
T KOG2855|consen 321 QSLLKS 326 (330)
T ss_pred HHHhhh
Confidence 998764
No 12
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=1.2e-44 Score=330.11 Aligned_cols=288 Identities=27% Similarity=0.369 Sum_probs=245.0
Q ss_pred ceEEEEccceeecccCCCCCCCC------C----C-----------CCccccCCChHHHHHHHHHHcCCCeEEEeecCCC
Q 018696 29 RLVVCFGEMLIDFVPTVGGVSLA------E----A-----------PAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDD 87 (351)
Q Consensus 29 ~~i~v~G~~~iD~~~~~~~~~~~------~----~-----------~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D 87 (351)
.+|+++|++++|++..++..|.. . + ......+||++.|+|.+|++||.++.++|.+|+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D 81 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDD 81 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 36999999999999998877622 0 1 1357899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccC
Q 018696 88 EFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIA 167 (351)
Q Consensus 88 ~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 167 (351)
.+|+.+++.|+++||+++++... +.+|+.++++++++|+|.+..+ ++++..++.+++....+++++++|++++....
T Consensus 82 ~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~ 158 (312)
T cd01168 82 KLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTY--LGAANELSPDDLDWSLLAKAKYLYLEGYLLTV 158 (312)
T ss_pred hhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeeecc--cchhhcCChhHCCHHHHccCCEEEEEEEecCC
Confidence 99999999999999999988754 5799999999988899987665 56666688888877789999999998864322
Q ss_pred chhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhc
Q 018696 168 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFH 247 (351)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~ 247 (351)
+ .+....+++.+++.|.++++||+... .....++.+.++++++|++++|++|++.+++.. .+...+.++++.+
T Consensus 159 ~--~~~~~~~~~~a~~~g~~v~~d~~~~~----~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~-~~~~~~~a~~l~~ 231 (312)
T cd01168 159 P--PEAILLAAEHAKENGVKIALNLSAPF----IVQRFKEALLELLPYVDILFGNEEEAEALAEAE-TTDDLEAALKLLA 231 (312)
T ss_pred C--HHHHHHHHHHHHHcCCEEEEeCCcHH----HHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCC-CCChHHHHHHHHh
Confidence 2 27888899999999999999996311 112345567888999999999999999999852 1233446788889
Q ss_pred CCCeEEEEeeCCcceEEEecCceeeecCcc-cccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHh
Q 018696 248 PNLKLLIVTEGSKGCRYYTKEFKGRVPGVK-TKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTV 326 (351)
Q Consensus 248 ~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~-~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i 326 (351)
.|++.||||+|++|++++.+++.+++|+++ ++++|||||||+|+|||++++++|++ +++|+++|+++|++++
T Consensus 232 ~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~-------~~~a~~~a~~~Aa~~v 304 (312)
T cd01168 232 LRCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEP-------LEECIRLGSYAAAEVI 304 (312)
T ss_pred cCCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHH
Confidence 999999999999999999888889999998 89999999999999999999999999 9999999999999999
Q ss_pred cccCCCC
Q 018696 327 TERGAIP 333 (351)
Q Consensus 327 ~~~g~~~ 333 (351)
++.|+.+
T Consensus 305 ~~~G~~~ 311 (312)
T cd01168 305 QQLGPRL 311 (312)
T ss_pred hccCCCC
Confidence 9999753
No 13
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-44 Score=325.89 Aligned_cols=302 Identities=39% Similarity=0.582 Sum_probs=260.7
Q ss_pred eEEEEccceeecccC-CCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 30 LVVCFGEMLIDFVPT-VGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~-~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
+|+++|++++|++.. .+..|.. .....+..+||++.|+|+++++||.++.++|.+|+|.+|+.+++.|++.|||+
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~ 80 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVDT 80 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 389999999999996 4434332 12246789999999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHc
Q 018696 105 SGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES 184 (351)
Q Consensus 105 ~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 184 (351)
+++......+|+.+.+.++.+|+|.+.+++.. +...++++.+++..+..++++|++++.+.... +....+++.+++.
T Consensus 81 ~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~a~~~ 157 (311)
T COG0524 81 SHVVTDEGATTGLALILVDEDGERTFVFYRGA-AALLLTPEDLDEDELAGADVLHISGIQLEIPP--EALLAALELAKAA 157 (311)
T ss_pred ceEEEcCCCcceEEEEEEcCCCceeEEEECCc-ccccCChHHcChHHHhhcCeeeEEEeecCCCh--HHHHHHHHHHHHc
Confidence 99999888899999999998999999998554 56667888776677889999999987654332 7889999999999
Q ss_pred CCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEE
Q 018696 185 GSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRY 264 (351)
Q Consensus 185 ~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~ 264 (351)
+.++++|++++...|. .+.+.++++++|++++|++|++.+++. . ++.....+.+...|++.+|+|+|++|+++
T Consensus 158 g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~-~-~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~ 230 (311)
T COG0524 158 GVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGL-E-EDAEAAAALLLAKGVKTVVVTLGAEGAVV 230 (311)
T ss_pred CCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCC-C-ccHHHHHHHHhhcCCCEEEEEeCCCcEEE
Confidence 9999999999887764 567788899999999999999999987 2 22222336778899999999999999999
Q ss_pred EecCc---eeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHH
Q 018696 265 YTKEF---KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAA 341 (351)
Q Consensus 265 ~~~~~---~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v 341 (351)
++++. ....++++++++|||||||+|.|||++++++|++ +++|+++|+++|++++++.|+...+|+.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~-------~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~~ 303 (311)
T COG0524 231 FTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKS-------LEEALRFANAAAALAVTRPGARPSLPTREEV 303 (311)
T ss_pred EeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhhhhccCCCCCCCCCHHHH
Confidence 98854 3334467789999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHhhh
Q 018696 342 LKLLHTV 348 (351)
Q Consensus 342 ~~~l~~~ 348 (351)
+.++++.
T Consensus 304 ~~~~~~~ 310 (311)
T COG0524 304 EAFLEEL 310 (311)
T ss_pred HHHHhcc
Confidence 9998764
No 14
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=3.6e-44 Score=324.10 Aligned_cols=284 Identities=34% Similarity=0.475 Sum_probs=243.5
Q ss_pred eEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~ 105 (351)
+|+++|.+++|++...+..|.. .......++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDVS 80 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCCce
Confidence 4899999999999987765543 344668899999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccch--hhhcCccEEEEccccccCchhHHHHHHHHHHHHH
Q 018696 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (351)
Q Consensus 106 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 183 (351)
++...++.+|++++++++.+|++++..+ .++...++++.+.. ..++.++++++++. .+.+.+..+++.+++
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~a~~ 153 (292)
T cd01174 81 YVEVVVGAPTGTAVITVDESGENRIVVV--PGANGELTPADVDAALELIAAADVLLLQLE-----IPLETVLAALRAARR 153 (292)
T ss_pred EEEEcCCCCceeEEEEEcCCCceEEEEe--CCCCCCCCHHHHHHHHHhcccCCEEEEeCC-----CCHHHHHHHHHHHHh
Confidence 9988888899999999988899988876 34444555555543 45789999988652 245677889999999
Q ss_pred cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCC--hhHHHHHHHhcCCCeEEEEeeCCcc
Q 018696 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKLFHPNLKLLIVTEGSKG 261 (351)
Q Consensus 184 ~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~--~~~~~~~~l~~~g~~~vvvt~G~~G 261 (351)
++.++++||..... ...++++++|++++|++|++.+++....+ +..++++.+.+.|++.|++|.|++|
T Consensus 154 ~g~~v~~D~~~~~~----------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 223 (292)
T cd01174 154 AGVTVILNPAPARP----------LPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKG 223 (292)
T ss_pred cCCEEEEeCCCcCc----------CcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 99999999974322 12567889999999999999999876543 3345678888899999999999999
Q ss_pred eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCC
Q 018696 262 CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPT 337 (351)
Q Consensus 262 ~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~ 337 (351)
++++++++.+++|+++++++|++||||+|+|||++++++|++ +++|+++|+++|+.++++.|+.+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 224 ALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARGLS-------LEEAIRFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred eEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence 999988888899999999999999999999999999999999 999999999999999999999888764
No 15
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=2.7e-43 Score=321.13 Aligned_cols=298 Identities=18% Similarity=0.232 Sum_probs=242.7
Q ss_pred CCceEEEEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCC
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid 103 (351)
++++|+++|++++|++...+..+.. .....+..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+
T Consensus 3 ~~~~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~gVd 82 (313)
T PRK09850 3 EKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVY 82 (313)
T ss_pred CCCcEEEECcEEEeeeccCCCcCcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcCCC
Confidence 4568999999999999875443221 2345778899999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc--hhhhcCccEEEEccccccCchhHHHHHHHHHHH
Q 018696 104 TSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (351)
Q Consensus 104 ~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 181 (351)
++++...++.+|++++++++++|++.+.++ .++....++.+.+. .+.+++++++++++. .+.+.+..+++.+
T Consensus 83 ~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~ 156 (313)
T PRK09850 83 VDKCLIVPGENTSSYLSLLDNTGEMLVAIN-DMNISNAITAEYLAQHREFIQRAKVIVADCN-----ISEEALAWILDNA 156 (313)
T ss_pred chheeecCCCCceEEEEEecCCCCEEEEec-CchHhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHHHHhc
Confidence 999888888899999999998898887654 23444445554443 245788999887652 1334555555533
Q ss_pred HHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCC
Q 018696 182 KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGS 259 (351)
Q Consensus 182 ~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~ 259 (351)
.+.++++||+.. |. ...+.++++++|++++|++|+..+++.... ++...+++.+.+.|++.+|||+|+
T Consensus 157 --~g~~v~~D~~~~---~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~ 226 (313)
T PRK09850 157 --ANVPVFVDPVSA---WK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGG 226 (313)
T ss_pred --cCCCEEEEcCCH---HH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 578999998731 11 134567788999999999999999885432 234456777888999999999999
Q ss_pred cceEEEecC-ceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCH
Q 018696 260 KGCRYYTKE-FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTK 338 (351)
Q Consensus 260 ~G~~~~~~~-~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~ 338 (351)
+|++++.++ +..++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|+.++++.+.....|+.
T Consensus 227 ~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~-------~~eal~~a~a~aa~~~~~~~~~~~~~~~ 299 (313)
T PRK09850 227 DGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMP-------FAESVRFAQGCSSMALSCEYTNNPDLSI 299 (313)
T ss_pred ceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCCcccCH
Confidence 999998753 56678888899999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 018696 339 EAALKLLHT 347 (351)
Q Consensus 339 ~~v~~~l~~ 347 (351)
++|++++++
T Consensus 300 ~~~~~~~~~ 308 (313)
T PRK09850 300 ANVISLVEN 308 (313)
T ss_pred HHHHHHHHH
Confidence 999998874
No 16
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.8e-43 Score=317.82 Aligned_cols=283 Identities=24% Similarity=0.337 Sum_probs=233.7
Q ss_pred eEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~ 105 (351)
+|+++|++++|++..++..|.. ....+...+|| +.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 79 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIEIL 79 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCccc
Confidence 4899999999999988876543 34567899999 999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCch-hHHHHHHHHHHHHHc
Q 018696 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEP-CRSTQLAAMNLAKES 184 (351)
Q Consensus 106 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~ 184 (351)
++... +.+|+.++++++.+|+|++..+. +.+..++++.++...+.+++++|++++.+.... ..+.+.++++..+ .
T Consensus 80 ~~~~~-~~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (289)
T cd01944 80 LPPRG-GDDGGCLVALVEPDGERSFISIS--GAEQDWSTEWFATLTVAPYDYVYLSGYTLASENASKVILLEWLEALP-A 155 (289)
T ss_pred ccccc-CCCCeEEEEEEcCCCceEEEEeC--CccCCCCHHHhccccCCCCCEEEEeCccccCcchhHHHHHHHHHhcc-C
Confidence 88765 56788887888888999887763 344456655554445788999999987553322 4556666666643 5
Q ss_pred CCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEE
Q 018696 185 GSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRY 264 (351)
Q Consensus 185 ~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~ 264 (351)
+.++++|++.+...|. .+.+.++++++|++++|++|++.+++....+. ...++++.+.+++.|+||+|++|+++
T Consensus 156 ~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~-~~~~~~~~~~~~~~vvvt~G~~Ga~~ 229 (289)
T cd01944 156 GTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPAA-EASALRIYAKTAAPVVVRLGSNGAWI 229 (289)
T ss_pred CCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcch-HHHHHHHHhccCCeEEEEECCCcEEE
Confidence 7899999987655442 34677888999999999999999999654432 23467788889999999999999999
Q ss_pred Ee-cCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccC
Q 018696 265 YT-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 330 (351)
Q Consensus 265 ~~-~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g 330 (351)
+. +++.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|
T Consensus 230 ~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~-------~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 230 RLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMS-------LADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred EecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhhccCC
Confidence 88 4566788989999999999999999999999999999 99999999999999999875
No 17
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=1.2e-42 Score=313.02 Aligned_cols=279 Identities=28% Similarity=0.361 Sum_probs=234.7
Q ss_pred eEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~ 105 (351)
+|+++|.+++|++...+..|.. +...+...+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~ 80 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTS 80 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCcc
Confidence 5899999999999988776543 345678999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcC
Q 018696 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (351)
Q Consensus 106 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 185 (351)
++...++.+|+.+++ ...++++....+. .....+..++++...+++++++|+++.. .+...++++.+++.|
T Consensus 81 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~i~~~~------~~~~~~~~~~~~~~g 151 (284)
T cd01945 81 FIVVAPGARSPISSI-TDITGDRATISIT--AIDTQAAPDSLPDAILGGADAVLVDGRQ------PEAALHLAQEARARG 151 (284)
T ss_pred ceeecCCCCCccEEE-EccCCCceEEEec--CCCCCCCcccCCHHHhCcCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 999888878888876 4456766666553 3333455666666668999999998752 356778899999999
Q ss_pred CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEE
Q 018696 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYY 265 (351)
Q Consensus 186 ~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 265 (351)
.++++|+..... .. +.++++++|++++|++|++.+++.... ++++.+.+.|++.||||+|++|++++
T Consensus 152 ~~v~~~~~~~~~--------~~-~~~~~~~~dil~~n~~e~~~l~~~~~~----~~~~~l~~~~~~~vivt~G~~G~~~~ 218 (284)
T cd01945 152 IPIPLDLDGGGL--------RV-LEELLPLADHAICSENFLRPNTGSADD----EALELLASLGIPFVAVTLGEAGCLWL 218 (284)
T ss_pred CCeeEeccCCcc--------cc-hHHHhccCCEEEeChhHHhhhcCCCHH----HHHHHHHhcCCcEEEEEECCCCeEEE
Confidence 877776643211 12 567888999999999999999876432 46677888999999999999999999
Q ss_pred e-cCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCC
Q 018696 266 T-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPT 337 (351)
Q Consensus 266 ~-~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~ 337 (351)
. +++.+++|+++++++||+||||+|.|||++++++|++ +++|+++|+++|++++++.|+..++|+
T Consensus 219 ~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 219 ERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMP-------LREALRFASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred cCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 8 6678899999999999999999999999999999999 999999999999999999999877764
No 18
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=8e-43 Score=322.03 Aligned_cols=290 Identities=21% Similarity=0.279 Sum_probs=236.0
Q ss_pred CCCceEEEEccceeecccCCCC------CCCC------------------CCCCccccCCChHHHHHHHHHHcC---C-C
Q 018696 26 AYDRLVVCFGEMLIDFVPTVGG------VSLA------------------EAPAFKKAPGGAPANVAVGISRLG---G-S 77 (351)
Q Consensus 26 ~~~~~i~v~G~~~iD~~~~~~~------~~~~------------------~~~~~~~~~GG~~~n~a~~l~~lG---~-~ 77 (351)
+++++|+++|++++|++..++. .|.. ........+||++.|+|+++++|| . +
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~ 82 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGF 82 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCc
Confidence 3567899999999999998874 1221 012347889999999999999875 5 9
Q ss_pred eEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccch----hhhc
Q 018696 78 SAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK----NLIK 153 (351)
Q Consensus 78 v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~----~~i~ 153 (351)
|.++|.+|+|.+|+.+++.|++.||+++++. .++.+|++++++++. ++|++..+ ++++..+++++++. +.++
T Consensus 83 v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~~--~ga~~~l~~~~i~~~~~~~~l~ 158 (345)
T PTZ00247 83 VCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVAN--LGAANHLSAEHMQSHAVQEAIK 158 (345)
T ss_pred EEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCcccccC--cchhhcCChHHcCcHHHHHHHh
Confidence 9999999999999999999999999998875 667799999998864 78877654 56667788877764 2688
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCC
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGD 233 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~ 233 (351)
+++++|+++..+. .+.+.+..+++.++++++++++|++... + .+...+.+.++++++|++++|++|++.+++..
T Consensus 159 ~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~~~--~--~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~ 232 (345)
T PTZ00247 159 TAQLYYLEGFFLT--VSPNNVLQVAKHARESGKLFCLNLSAPF--I--SQFFFERLLQVLPYVDILFGNEEEAKTFAKAM 232 (345)
T ss_pred hCCEEEEEEEEec--ccHHHHHHHHHHHHHcCCEEEEECCcHH--H--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhhcc
Confidence 9999999986432 2457888999999999999999975311 1 12334557888999999999999999999832
Q ss_pred --CCChhHHHHHHHhc------CCCeEEEEeeCCcceEEEecCceeeecCccc---ccccCCCCchHHHHHHHHHHHhcC
Q 018696 234 --DHNDDNVVLEKLFH------PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT---KAVDTTGAGDSFVSGILNCLAADQ 302 (351)
Q Consensus 234 --~~~~~~~~~~~l~~------~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~---~~vd~tGaGD~f~ag~~~~l~~g~ 302 (351)
..++..++++.+.+ .+++.||||+|++|++++.+++.+++|++++ +++|||||||+|.|||+++|++|+
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~ 312 (345)
T PTZ00247 233 KWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGK 312 (345)
T ss_pred CCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCC
Confidence 11233445555543 3578999999999999999888888998887 599999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhHHhcccCCC
Q 018696 303 NLIKDENRLREALLFANACGALTVTERGAI 332 (351)
Q Consensus 303 ~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~ 332 (351)
+ +++|+++|+++|++++++.|+.
T Consensus 313 ~-------~~~al~~a~~aAa~~v~~~Ga~ 335 (345)
T PTZ00247 313 D-------IDRCVEAGHYSAQVIIQHNGCT 335 (345)
T ss_pred C-------HHHHHHHHHHHHHHHHhccCCC
Confidence 9 9999999999999999999986
No 19
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.2e-42 Score=324.04 Aligned_cols=306 Identities=19% Similarity=0.236 Sum_probs=242.3
Q ss_pred CCCCceEEEEccceeecccCCCCCC-------CCC----------------C-CC--ccccCCChHHHHHHHHHHcC-CC
Q 018696 25 GAYDRLVVCFGEMLIDFVPTVGGVS-------LAE----------------A-PA--FKKAPGGAPANVAVGISRLG-GS 77 (351)
Q Consensus 25 ~~~~~~i~v~G~~~iD~~~~~~~~~-------~~~----------------~-~~--~~~~~GG~~~n~a~~l~~lG-~~ 77 (351)
.+++.+|+.+|++.+|+...++... +.. . .. ....+||++.|+|++|++|| .+
T Consensus 30 ~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~ 109 (434)
T PRK15074 30 ETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDR 109 (434)
T ss_pred CCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCC
Confidence 4678899999999999998765321 110 0 01 35679999999999999996 99
Q ss_pred eEEEeecCCC-hHHHHHHHHHH--HCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcC
Q 018696 78 SAFVGKLGDD-EFGYMLANILK--ENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQ 154 (351)
Q Consensus 78 v~~v~~vG~D-~~g~~i~~~l~--~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 154 (351)
+.++|.||+| .+|+++++.|+ +.||+++++...+ .+|+.++++++++|+|++..+ ++++..+++++++...+++
T Consensus 110 ~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~t~--~GA~~~Lt~edld~~~i~~ 186 (434)
T PRK15074 110 SVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFAIS--PGHMNQLRPESIPEDVIAG 186 (434)
T ss_pred eEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEEEe--cChhhcCChhHCCHhHhcc
Confidence 9999999999 79999999997 6899999887554 589999999999999999887 5677788998888888999
Q ss_pred ccEEEEcccccc---CchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcC
Q 018696 155 GSIFHYGSISLI---AEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTG 231 (351)
Q Consensus 155 ~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 231 (351)
++++|++++.+. .+...+....+++.+++.|+++++|++.+...+...+.+ ...+++++|++++|++|+..+++
T Consensus 187 a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~---~e~l~~~vDILf~NeeEa~~LtG 263 (434)
T PRK15074 187 ASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWW---QEFLKEHVSILAMNEDEAEALTG 263 (434)
T ss_pred CCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHH---HHHHHhcCCEEEcCHHHHHHHhC
Confidence 999999997654 224467888999999999999999998654333222222 23455799999999999999998
Q ss_pred CCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCc-------e--------------------------------ee
Q 018696 232 GDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEF-------K--------------------------------GR 272 (351)
Q Consensus 232 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~-------~--------------------------------~~ 272 (351)
..+.+ ++++.+.+ +++.||||+|++|++++..++ . .+
T Consensus 264 ~~d~e---ea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T PRK15074 264 ESDPL---LASDKALD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYSH 339 (434)
T ss_pred CCCHH---HHHHHHHc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccccccccc
Confidence 65333 35556654 478999999999999965221 1 27
Q ss_pred ecCc---ccccccCCCCchHHHHHHHHHHHhcC-Ccc------------cchHHHHHHHHHHHHHHhHHhcccCC--CCC
Q 018696 273 VPGV---KTKAVDTTGAGDSFVSGILNCLAADQ-NLI------------KDENRLREALLFANACGALTVTERGA--IPA 334 (351)
Q Consensus 273 v~~~---~~~~vd~tGaGD~f~ag~~~~l~~g~-~~~------------~~~~~~~~a~~~a~~~Aa~~i~~~g~--~~~ 334 (351)
+|++ ++++||||||||+|.|||+++|.+|+ +.. ....++.+|+++|+++|+..+++.|+ ...
T Consensus 340 ~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~ 419 (434)
T PRK15074 340 IAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRG 419 (434)
T ss_pred cCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 8888 78999999999999999999999997 000 00012999999999999999999998 456
Q ss_pred CCCHHH
Q 018696 335 LPTKEA 340 (351)
Q Consensus 335 ~~~~~~ 340 (351)
+|+.++
T Consensus 420 ~p~~~~ 425 (434)
T PRK15074 420 LPERED 425 (434)
T ss_pred CCCccc
Confidence 776554
No 20
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=1.5e-43 Score=321.31 Aligned_cols=292 Identities=38% Similarity=0.578 Sum_probs=246.2
Q ss_pred ceEEEEccceeecccCCCCC--CCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 018696 29 RLVVCFGEMLIDFVPTVGGV--SLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (351)
Q Consensus 29 ~~i~v~G~~~iD~~~~~~~~--~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~ 106 (351)
.+|+++|++++|++...+.. ...+......++||++.|+|.+|++||.+|.++|.+|+|.+|+.+++.|++.||++++
T Consensus 2 ~~v~~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~ 81 (301)
T PF00294_consen 2 KKVLVIGEVNIDIIGYVDRFKGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVDTSY 81 (301)
T ss_dssp EEEEEESEEEEEEEEESSSHTTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEEETT
T ss_pred CcEEEECccceEEEeecCCcCCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhccccccccccc
Confidence 37999999999999988762 1115667889999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcC-
Q 018696 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG- 185 (351)
Q Consensus 107 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~- 185 (351)
+.+.++.+|+.++++++++|++++..+ +......+.+.+....+..++++|+++..+....+.+.+..+.+.+++.+
T Consensus 82 i~~~~~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (301)
T PF00294_consen 82 IPRDGDEPTGRCLIIVDPDGERTFVFS--PGANSDLTPDELDEEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNGP 159 (301)
T ss_dssp EEEESSSEEEEEEEEEETTSEEEEEEE--EGGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTTE
T ss_pred cccccccccceeEeeecccccceeeec--cccccccccccccccccccccceeecccccccccccceeeecccccccccc
Confidence 998888999999999998899988876 44444465555556788999999999933344445566777777777776
Q ss_pred -CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCC--CCChhHHHHHHHhcCCCeEEEEeeCCcce
Q 018696 186 -SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGD--DHNDDNVVLEKLFHPNLKLLIVTEGSKGC 262 (351)
Q Consensus 186 -~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~--~~~~~~~~~~~l~~~g~~~vvvt~G~~G~ 262 (351)
.+++.++. | ...++.+.++++++|++++|++|+..+++.. +.++....+++++..|++.+++|+|++|+
T Consensus 160 ~~~~~~~~~-----~---~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~ 231 (301)
T PF00294_consen 160 FDPVFRDPS-----W---DDLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGA 231 (301)
T ss_dssp EEEEEEGGG-----S---HHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEE
T ss_pred ccccccccc-----c---cccchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhccccccCc
Confidence 35555543 1 1256788888899999999999999999988 44444555677777999999999999999
Q ss_pred EEEecCceeeecC-cccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCC
Q 018696 263 RYYTKEFKGRVPG-VKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPT 337 (351)
Q Consensus 263 ~~~~~~~~~~v~~-~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~ 337 (351)
+++++++.+++++ ++++++|+|||||+|+|||++++++|++ +++|+++|+++|+.++++.|+...+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~-------~~~a~~~a~~~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 232 LYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMS-------LEEALKFANAAAALKVQQPGPRSPLPT 300 (301)
T ss_dssp EEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred ccccccccccccccccccccceeccchhhhHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCCCCCcCCCCC
Confidence 9999988999999 4689999999999999999999999998 999999999999999999999887776
No 21
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=6.9e-42 Score=316.23 Aligned_cols=302 Identities=28% Similarity=0.320 Sum_probs=242.6
Q ss_pred CCCCCCceEEEEc-cceeecccCCCCCC-------CC---------------C-----------CCCccccCCChHHHHH
Q 018696 23 GSGAYDRLVVCFG-EMLIDFVPTVGGVS-------LA---------------E-----------APAFKKAPGGAPANVA 68 (351)
Q Consensus 23 ~~~~~~~~i~v~G-~~~iD~~~~~~~~~-------~~---------------~-----------~~~~~~~~GG~~~n~a 68 (351)
+.+++|++|+.+| ++.+|+...++... +. . ....+.++||++.|++
T Consensus 14 ~~~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a 93 (367)
T PLN02379 14 GDGPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTI 93 (367)
T ss_pred CCCCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHH
Confidence 4567789999999 99999998764221 10 0 1126678999999999
Q ss_pred HHHHH-cCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCcccc
Q 018696 69 VGISR-LGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESEL 147 (351)
Q Consensus 69 ~~l~~-lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i 147 (351)
++|++ ||.++.++|.+|+|.+|+++++.|++.||+++++... +.+|+.++++++++|+|++..+ .+....++.+++
T Consensus 94 ~~la~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~-~~~Tg~~~v~v~~dgert~~~~--lg~~~~l~~~~~ 170 (367)
T PLN02379 94 RGLSAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAK-KGPTAQCVCLVDALGNRTMRPC--LSSAVKLQADEL 170 (367)
T ss_pred HHHHHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccC-CCCCceEEEEECCCCCccccCC--ccccccCChhHC
Confidence 99986 9999999999999999999999999999999887554 4589999999998999887544 345556777777
Q ss_pred chhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhh--cCcEEEeCHHH
Q 018696 148 DKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDE 225 (351)
Q Consensus 148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~N~~E 225 (351)
..+.+++++++|++ +... ..+.+.++++.++++|+++++|++.... ...+++.+.++++ ++|++++|++|
T Consensus 171 ~~~~~~~~~~v~v~-~~~~---~~~~~~~~~~~A~~~g~~v~lD~s~~~~----v~~~r~~l~~ll~~~~vDilf~Ne~E 242 (367)
T PLN02379 171 TKEDFKGSKWLVLR-YGFY---NLEVIEAAIRLAKQEGLSVSLDLASFEM----VRNFRSPLLQLLESGKIDLCFANEDE 242 (367)
T ss_pred CHHHHhcCCEEEEE-cccC---CHHHHHHHHHHHHHcCCEEEEeccchhh----hhhhhHHHHHHhhcCCccEEEcCHHH
Confidence 77789999999998 3322 3578889999999999999999964211 1133455666664 89999999999
Q ss_pred HhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcc-cccccCCCCchHHHHHHHHHHHhcCCc
Q 018696 226 ITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVK-TKAVDTTGAGDSFVSGILNCLAADQNL 304 (351)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~-~~~vd~tGaGD~f~ag~~~~l~~g~~~ 304 (351)
+..+++....+....+ .++++.+++.++||+|++|++++.+++.+++|+++ .+++|||||||+|.|||++++++|++
T Consensus 243 a~~l~~~~~~~~~~~~-~~~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~- 320 (367)
T PLN02379 243 ARELLRGEQESDPEAA-LEFLAKYCNWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLS- 320 (367)
T ss_pred HHHHhcCCCCCCHHHH-HHHHHhcCCEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCC-
Confidence 9999875432233323 34556688999999999999999988889999987 57999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHHHHh
Q 018696 305 IKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLLH 346 (351)
Q Consensus 305 ~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~l~ 346 (351)
+++|+++|+++|+.+|++.|++. +.++.+++++
T Consensus 321 ------l~~a~~~g~~aAa~vi~~~G~~~---~~~~~~~~~~ 353 (367)
T PLN02379 321 ------LEECCKVGACSGGSVVRALGGEV---TPENWQWMYK 353 (367)
T ss_pred ------HHHHHHHHHHHHHHHHhccCCCC---ChHHHHHHHH
Confidence 99999999999999999999764 5555555444
No 22
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=5.7e-42 Score=307.74 Aligned_cols=270 Identities=30% Similarity=0.421 Sum_probs=227.5
Q ss_pred eEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~ 105 (351)
+|+++|++++|+++.++..|.. ........+||++.|+|.+|++||.+|.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVDTS 80 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCCcc
Confidence 4899999999999988877653 355788999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcC
Q 018696 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (351)
Q Consensus 106 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 185 (351)
++...++.+|++++++++.++++.+..+ ++....+++++ ....+++++++|+++.. ...++++.+++.|
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g 149 (279)
T cd01942 81 HVRVVDEDSTGVAFILTDGDDNQIAYFY--PGAMDELEPND-EADPDGLADIVHLSSGP--------GLIELARELAAGG 149 (279)
T ss_pred ceEEcCCCCcceEEEEEcCCCCEEEEec--CCcccccccCC-chhhhcccCEEEeCCch--------HHHHHHHHHHHcC
Confidence 9987777889999998888887777654 44444455554 45568899999998752 3556777888889
Q ss_pred CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHH---hhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcce
Q 018696 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEI---TFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGC 262 (351)
Q Consensus 186 ~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~---~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~ 262 (351)
.++++|++.....|. .+.+.++++++|++++|++|+ ..+++..... ...+++.||+|+|++|+
T Consensus 150 ~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~---------~~~~~~~vvvt~G~~G~ 215 (279)
T cd01942 150 ITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAELLKERTGLSEAE---------LASGVRVVVVTLGPKGA 215 (279)
T ss_pred CeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChHH---------HhcCCCEEEEEECCCce
Confidence 999999986544332 245677889999999999999 4555543211 12788999999999999
Q ss_pred EEEecCceeeecCc-ccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 263 RYYTKEFKGRVPGV-KTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 263 ~~~~~~~~~~v~~~-~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
+++.+++.+++|++ +++++|||||||+|+|||++++++|++ +++|+++|+++|+.++++.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 216 IVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYD-------LEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred EEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcccCC
Confidence 99998888999997 889999999999999999999999999 999999999999999999885
No 23
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.8e-41 Score=306.57 Aligned_cols=285 Identities=33% Similarity=0.460 Sum_probs=241.6
Q ss_pred ccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeec
Q 018696 35 GEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYD 110 (351)
Q Consensus 35 G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~ 110 (351)
|.+++|++..+++.|.. ....+..++||++.|+|++|++||.++.+++.+|+|.+|+.+++.|++.||+++++...
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~ 80 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTV 80 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEc
Confidence 78899999988876644 35567899999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc--hhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeE
Q 018696 111 STARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSIL 188 (351)
Q Consensus 111 ~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v 188 (351)
++.+|++++++.+.+|++++..+ ++.+..+++++++ .+.+..+++++++. +.+.+.+..+++.+++++.++
T Consensus 81 ~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v 153 (293)
T TIGR02152 81 KDTPTGTAFITVDDTGENRIVVV--AGANAELTPEDIDAAEALIAESDIVLLQL-----EIPLETVLEAAKIAKKHGVKV 153 (293)
T ss_pred CCCCCceEEEEEcCCCCEEEEEE--CCcCCcCCHHHHHHHHhhhccCCEEEEec-----CCCHHHHHHHHHHHHHcCCEE
Confidence 88899999999988888887765 3444556666655 24578899987653 234567788999999999999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCC--CChhHHHHHHHhcCCCeEEEEeeCCcceEEEe
Q 018696 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD--HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYT 266 (351)
Q Consensus 189 ~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~--~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 266 (351)
++|++.... ....++++++|++++|++|++.+++... .+.....++.+.+.|++.++||.|++|++++.
T Consensus 154 ~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~ 224 (293)
T TIGR02152 154 ILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVS 224 (293)
T ss_pred EEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEe
Confidence 999964321 1124678899999999999999988652 23444567888889999999999999999998
Q ss_pred cCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHH
Q 018696 267 KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAAL 342 (351)
Q Consensus 267 ~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~ 342 (351)
+++.+++|+++++++|++||||+|+|||++++++|++ +++|+++|+++|+.++++.|+...+|+.++++
T Consensus 225 ~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 225 KDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKS-------LEDAIRFANAAAAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred CCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHcccCcccCCCChHHcC
Confidence 8888889998999999999999999999999999999 99999999999999999999987788887763
No 24
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=3.5e-41 Score=312.93 Aligned_cols=297 Identities=18% Similarity=0.214 Sum_probs=232.9
Q ss_pred CCceEEEEccceeecccCCC-CCCCC--CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCC
Q 018696 27 YDRLVVCFGEMLIDFVPTVG-GVSLA--EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~-~~~~~--~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid 103 (351)
++..|+|+|++++|+++.++ ..|.. ........+||++.|+|.+|++||.+|.++|.+|+|.+|+++++.|++.||+
T Consensus 56 ~~~~v~viG~~~vD~~~~~~~~~p~~~~~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GVd 135 (362)
T PRK09954 56 EQEYCVVVGAINMDIRGMADIRYPQAASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVN 135 (362)
T ss_pred CCccEEEEEEEEEEEEEeeCCcCcCCCCCCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCCC
Confidence 34479999999999998765 33432 3456788899999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccch--hhhcCccEEEEccccccCchhHHHHHHHHHHH
Q 018696 104 TSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (351)
Q Consensus 104 ~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 181 (351)
++++...++.+|+.++++.+.++++. ..+.++.....++++.+.. ..+..+++++++.- .+.+.+..+++.+
T Consensus 136 ~~~~~~~~~~~T~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~a 209 (362)
T PRK09954 136 VSGCIRLHGQSTSTYLAIANRQDETV-LAINDTHILQQLTPQLLNGSRDLIRHAGVVLADCN-----LTAEALEWVFTLA 209 (362)
T ss_pred ccceEEcCCCCCeEEEEEEcCCCCEE-EEEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECC-----CCHHHHHHHHHhC
Confidence 99998888888998888776655544 4443333444555554432 34677888877542 2234455555544
Q ss_pred HHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCC
Q 018696 182 KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGS 259 (351)
Q Consensus 182 ~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~ 259 (351)
+++++++|+.... ....+.++++++|++++|++|++.+++.... ++..++++.+.+.|++.||||+|+
T Consensus 210 --~~~~v~~D~~~~~--------~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~ 279 (362)
T PRK09954 210 --DEIPVFVDTVSEF--------KAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPD 279 (362)
T ss_pred --CCCcEEEECCCHH--------HhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4789999986311 1133567889999999999999999986433 233456778888999999999999
Q ss_pred cceEEEecC-ceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCH
Q 018696 260 KGCRYYTKE-FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTK 338 (351)
Q Consensus 260 ~G~~~~~~~-~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~ 338 (351)
+|++++..+ +.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|++++.+........+.
T Consensus 280 ~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~-------~~eal~~a~a~Aal~~~s~~~~~~~~~~ 352 (362)
T PRK09954 280 ESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYS-------FRDSARFAMACAAISRASGSLNNPTLSA 352 (362)
T ss_pred ccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCcCCCcCCH
Confidence 999888754 46778888999999999999999999999999999 9999999999999997765544344688
Q ss_pred HHHHHHHh
Q 018696 339 EAALKLLH 346 (351)
Q Consensus 339 ~~v~~~l~ 346 (351)
+.++++++
T Consensus 353 ~~~~~~~~ 360 (362)
T PRK09954 353 DNALSLVP 360 (362)
T ss_pred HHHHHHhc
Confidence 98888774
No 25
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.3e-40 Score=296.62 Aligned_cols=260 Identities=26% Similarity=0.369 Sum_probs=218.1
Q ss_pred eEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~ 105 (351)
+|+++|++++|+++.++..|.. ....+...+||++.|+|.+|++||.++.++|.+|+|..|+.+++.|++ ++++.
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~ 79 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES-GGDKH 79 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh-cCCcc
Confidence 5899999999999988776554 355788999999999999999999999999999999999999999999 99988
Q ss_pred CeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcC
Q 018696 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (351)
Q Consensus 106 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 185 (351)
.+... +..|+.++++++.+|+|++..+..+ . .++++...+++++++|+++.. ...++++.+++.+
T Consensus 80 ~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~ 144 (265)
T cd01947 80 TVAWR-DKPTRKTLSFIDPNGERTITVPGER--L----EDDLKWPILDEGDGVFITAAA--------VDKEAIRKCRETK 144 (265)
T ss_pred eEEec-CCCCceEEEEECCCCcceEEecCCC--C----cccCCHhHhccCCEEEEeccc--------ccHHHHHHHHHhC
Confidence 77654 5589999998888898887654221 1 233445567899999998753 1235566677664
Q ss_pred CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEE
Q 018696 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYY 265 (351)
Q Consensus 186 ~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 265 (351)
.+++|+..+... ..+.++++++|++++|++|+..+++ ++.+.+.+++.++||+|++|++++
T Consensus 145 -~~~~d~~~~~~~--------~~~~~~~~~~d~~~~n~~e~~~l~~----------~~~~~~~~~~~viit~G~~Ga~~~ 205 (265)
T cd01947 145 -LVILQVTPRVRV--------DELNQALIPLDILIGSRLDPGELVV----------AEKIAGPFPRYLIVTEGELGAILY 205 (265)
T ss_pred -CeEeccCccccc--------hhHHHHhhhCCEEEeCHHHHHHhhh----------HHHHHhccCCEEEEEeCCCCeEEE
Confidence 577888654321 2457788999999999999998764 346777899999999999999999
Q ss_pred ecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 266 TKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 266 ~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
.+++.+++|+++++++|+|||||+|.|||++++++|++ +++|+++|+++|+.++++.|+
T Consensus 206 ~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~v~~~G~ 264 (265)
T cd01947 206 PGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWS-------IEEALELGAQCGAICVSHFGP 264 (265)
T ss_pred ECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCC
Confidence 98888899999999999999999999999999999999 999999999999999999985
No 26
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=2.7e-40 Score=300.51 Aligned_cols=289 Identities=25% Similarity=0.289 Sum_probs=234.7
Q ss_pred EEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 018696 33 CFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (351)
Q Consensus 33 v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~ 109 (351)
+.-++.+|+++.+++.|.. .......++||++.|+|.+|++||.+|.++|.+|+| .|+.+++.|++.||+++++..
T Consensus 4 ~~~~~~~D~~~~~~~~~~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~~ 82 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLTLGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVRV 82 (304)
T ss_pred EEcchHHeEEEEccccccCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEEC
Confidence 4457889999998887732 355788999999999999999999999999999999 699999999999999998876
Q ss_pred cCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccch------hhhcCccEEEEccccccCchhHHHHHHHHHHHHH
Q 018696 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (351)
Q Consensus 110 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 183 (351)
.+ .|++++++++.+|++....+ .+. .++.++++. +.+++++++|+++... ...+.+.+..+++.+++
T Consensus 83 ~~--~t~~~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~~~~~ 155 (304)
T TIGR03828 83 PG--ETRINVKIKEPSGTETKLNG--PGP--EISEEELEALLEKLRAQLAEGDWLVLSGSLP-PGVPPDFYAELIALARE 155 (304)
T ss_pred CC--CCeeeEEEEeCCCCEEEEEC--CCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCC-CCCCHHHHHHHHHHHHH
Confidence 53 46777777777787665543 222 244443321 2578999999987532 22345678889999999
Q ss_pred cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcc
Q 018696 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKG 261 (351)
Q Consensus 184 ~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G 261 (351)
.+.++++|++.. ... ..+...+|++++|+.|++.+++.... ++..+.++.+.+.|++.||||+|++|
T Consensus 156 ~~~~v~~D~~~~--------~~~---~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G 224 (304)
T TIGR03828 156 KGAKVILDTSGE--------ALR---DGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGADG 224 (304)
T ss_pred cCCEEEEECChH--------HHH---HHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC
Confidence 999999998631 111 22234689999999999999986532 33445677888899999999999999
Q ss_pred eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHH
Q 018696 262 CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAA 341 (351)
Q Consensus 262 ~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v 341 (351)
++++.+++.+++|+++++++|+|||||+|.|||+++|++|++ +++|+++|+++|++++++.|+ .+|+.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~-------~~~a~~~a~~~Aa~~~~~~G~--~~p~~~~~ 295 (304)
T TIGR03828 225 ALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLS-------LEEALRLAVAAGSAAAFSEGT--GLPDPEDI 295 (304)
T ss_pred cEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCC--CCCCHHHH
Confidence 999988878889998899999999999999999999999999 999999999999999999997 47899999
Q ss_pred HHHHhhhc
Q 018696 342 LKLLHTVA 349 (351)
Q Consensus 342 ~~~l~~~~ 349 (351)
++++.++.
T Consensus 296 ~~~~~~~~ 303 (304)
T TIGR03828 296 EELLPQVT 303 (304)
T ss_pred HHHHhccc
Confidence 99998774
No 27
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=4.5e-40 Score=293.05 Aligned_cols=263 Identities=28% Similarity=0.335 Sum_probs=215.8
Q ss_pred eEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~ 109 (351)
+|+|+|++++|++... ...++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++..
T Consensus 1 ~v~~iG~~~~D~~~~~----------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~ 70 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRV 70 (264)
T ss_pred CeEEEcceEEEEeccC----------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEE
Confidence 5899999999999752 357899999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEE
Q 018696 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189 (351)
Q Consensus 110 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~ 189 (351)
.++ +|+.+++. ..+|+|.+..++. +......+.......+++++++|++++.. .+.+.++++.+++.+++++
T Consensus 71 ~~~-~t~~~~~~-~~~g~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~a~~~g~~v~ 142 (264)
T cd01940 71 KEG-ENAVADVE-LVDGDRIFGLSNK-GGVAREHPFEADLEYLSQFDLVHTGIYSH-----EGHLEKALQALVGAGALIS 142 (264)
T ss_pred cCC-CCceEEEE-ecCCceEEEeecC-CcHHhcccCcccHhHHhcCCEEEEccccc-----HHHHHHHHHHHHHcCCEEE
Confidence 654 78877744 5678888766532 22222222223345678999999987531 4577889999999999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCc
Q 018696 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEF 269 (351)
Q Consensus 190 ~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 269 (351)
+|++.+. . .+.+.++++++|++++|++|... ++..+.++.+.+.+++.+|||+|++|++++.+++
T Consensus 143 ~D~~~~~---~-----~~~~~~~~~~~d~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~~ 207 (264)
T cd01940 143 FDFSDRW---D-----DDYLQLVCPYVDFAFFSASDLSD-------EEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAV 207 (264)
T ss_pred EcCcccC---C-----HHHHHhhcccCCEEEechhhcCc-------chHHHHHHHHHHcCCCEEEEEECCCCeEEEeCCe
Confidence 9998642 1 12356778999999999877531 2333456778889999999999999999999888
Q ss_pred eeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 270 KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 270 ~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
.+++|+++++++|||||||+|.|||++++++|++ ++++|+++|+++|++++++.|+
T Consensus 208 ~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~------~~~~al~~a~~~aa~~~~~~G~ 263 (264)
T cd01940 208 FYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGT------AIAEAMRQGAQFAAKTCGHEGA 263 (264)
T ss_pred EEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHHHHhcccCC
Confidence 8899999999999999999999999999999974 2899999999999999999986
No 28
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=1.8e-40 Score=303.05 Aligned_cols=292 Identities=24% Similarity=0.285 Sum_probs=229.5
Q ss_pred CCceEEEEccceeecccC--CCCCCC------CCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHH
Q 018696 27 YDRLVVCFGEMLIDFVPT--VGGVSL------AEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILK 98 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~--~~~~~~------~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~ 98 (351)
+.++|+++|++++|++.. +++.+. .........+|| +.|+|.+|++||.+|.++|.+|+|.+|+++++.|+
T Consensus 6 ~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~ 84 (315)
T TIGR02198 6 KGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLA 84 (315)
T ss_pred CCCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHH
Confidence 467899999999999876 333211 122345678999 69999999999999999999999999999999999
Q ss_pred HCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCcc----ccc--hhhhcCccEEEEccccccCchhHH
Q 018696 99 ENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCES----ELD--KNLIKQGSIFHYGSISLIAEPCRS 172 (351)
Q Consensus 99 ~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~i~--~~~i~~~~~~~~~~~~~~~~~~~~ 172 (351)
+.||+++++...++.+|+.++++++.++ ..+... ......++.. .+. ...+++++++++++.. ....+.+
T Consensus 85 ~~gI~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~-~~~~~~~ 160 (315)
T TIGR02198 85 EEGIDTSGLIRDKDRPTTTKTRVLARNQ-QLLRVD--FEERDPINAELEARLLAAIREQLASADAVVLSDYA-KGVLTPR 160 (315)
T ss_pred HCCCCcceEEECCCCCcceEEEEEcCCe-EEEEec--CCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCC-CCccCHH
Confidence 9999999998888889999988877532 222211 2111112211 111 2457899999998753 2233457
Q ss_pred HHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCC-CChhHHHHHHHh-cCCC
Q 018696 173 TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD-HNDDNVVLEKLF-HPNL 250 (351)
Q Consensus 173 ~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~-~~~~~~~~~~l~-~~g~ 250 (351)
.+..+++.+++.++++++||+... ...++++|++++|++|++.+++... .++..+.++.+. +.|+
T Consensus 161 ~~~~~~~~a~~~g~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~l~~~~g~ 227 (315)
T TIGR02198 161 VVQEVIAAARKHGKPVLVDPKGKD-------------FSRYRGATLITPNRKEAEAAVGACDTEAELVQAAEKLLEELDL 227 (315)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCcc-------------hhhcCCCcEECCCHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Confidence 788899999999999999997431 1246789999999999999998422 223334455555 4789
Q ss_pred eEEEEeeCCcceEEEec-CceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhccc
Q 018696 251 KLLIVTEGSKGCRYYTK-EFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTER 329 (351)
Q Consensus 251 ~~vvvt~G~~G~~~~~~-~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
+.||||.|++|++++.+ ++.+++|+++++++||+||||+|.|||++++++|++ +++|+++|+++|++++++.
T Consensus 228 ~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~~-------~~~al~~A~~~aa~~~~~~ 300 (315)
T TIGR02198 228 EALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAAGAS-------LEEACRLANAAAGVVVGKL 300 (315)
T ss_pred CEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhhhhccC
Confidence 99999999999999884 567889999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCHHHHHHHH
Q 018696 330 GAIPALPTKEAALKLL 345 (351)
Q Consensus 330 g~~~~~~~~~~v~~~l 345 (351)
|+.+ ++++++++.|
T Consensus 301 G~~~--~~~~~~~~~~ 314 (315)
T TIGR02198 301 GTAT--VSPAELANAL 314 (315)
T ss_pred CCCC--CCHHHHHHHh
Confidence 9864 6899998765
No 29
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=7.5e-40 Score=297.98 Aligned_cols=292 Identities=20% Similarity=0.243 Sum_probs=233.3
Q ss_pred eEEEEccceeecccCCCCCCCCC---CCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLAE---APAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~~---~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~ 106 (351)
-+.+..++.+|+++..+..+... .......+||++.|+|.+|++||.++.++|.+|+ .+|+.+++.|++ ||++++
T Consensus 2 ~~~~t~np~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~ 79 (309)
T PRK13508 2 ILTVTLNPSIDISYPLDELKLDTVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QIKHAF 79 (309)
T ss_pred EEEEecChHHeEEEEeCCeeeCCeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CCCceE
Confidence 47788999999999988876542 4467899999999999999999999999999996 589999999999 999987
Q ss_pred eeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc------hhhhcCccEEEEccccccCchhHHHHHHHHHH
Q 018696 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD------KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNL 180 (351)
Q Consensus 107 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (351)
+.. ++ .|++++++++ +|++++... +++. ++.+... ...+.+++++|+++... .....+....+++.
T Consensus 80 ~~~-~~-~t~~~~~~~~-~g~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~~ 151 (309)
T PRK13508 80 YKI-KG-ETRNCIAILH-EGQQTEILE--KGPE--ISVQEADGFLHHFKQLLESVEVVAISGSLP-AGLPVDYYAQLIEL 151 (309)
T ss_pred EEC-CC-CCeeeEEEEe-CCCEEEEEC--CCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCC-CCcCHHHHHHHHHH
Confidence 654 33 5677766665 677777654 2322 3332211 23578999999988542 22234667888899
Q ss_pred HHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC---ChhHHHHHHHhcCCCeEEEEee
Q 018696 181 AKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH---NDDNVVLEKLFHPNLKLLIVTE 257 (351)
Q Consensus 181 a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~---~~~~~~~~~l~~~g~~~vvvt~ 257 (351)
+++.|+++++|++.. . ...+...+.++|++++|++|++.+++.... ++..+.++++...|++.|+||+
T Consensus 152 a~~~g~~v~~D~~~~--------~-~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvvT~ 222 (309)
T PRK13508 152 ANQAGKPVVLDCSGA--------A-LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIVSL 222 (309)
T ss_pred HHHCCCEEEEECCcH--------H-HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 999999999998621 1 122333356899999999999999986432 2233445566678999999999
Q ss_pred CCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCC
Q 018696 258 GSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPT 337 (351)
Q Consensus 258 G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~ 337 (351)
|++|++++.+++.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.+. +..+
T Consensus 223 G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~-------~~~al~~a~a~aa~~~~~~~~--~~~~ 293 (309)
T PRK13508 223 GADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQED-------DADLLKKANVLGMLNAQEKQT--GHVN 293 (309)
T ss_pred CCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCc--CCCC
Confidence 9999999888888889999999999999999999999999999999 999999999999999999987 4578
Q ss_pred HHHHHHHHhhhc
Q 018696 338 KEAALKLLHTVA 349 (351)
Q Consensus 338 ~~~v~~~l~~~~ 349 (351)
++++++++++++
T Consensus 294 ~~~~~~~~~~i~ 305 (309)
T PRK13508 294 MANYDELYNQIE 305 (309)
T ss_pred HHHHHHHHhceE
Confidence 999999998875
No 30
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=7.4e-40 Score=295.51 Aligned_cols=274 Identities=22% Similarity=0.249 Sum_probs=218.0
Q ss_pred EEEEccceeecccCCCCCCCCC----CCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 018696 31 VVCFGEMLIDFVPTVGGVSLAE----APAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (351)
Q Consensus 31 i~v~G~~~iD~~~~~~~~~~~~----~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~ 106 (351)
|+++|++++|+++.++..|... .......+||++.|+|.+|++||.++.++|.+|+|++|+.+++.|++.||++++
T Consensus 2 v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~~ 81 (290)
T cd01939 2 VLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGIDISH 81 (290)
T ss_pred EEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCceee
Confidence 8999999999999988876542 334578899999999999999999999999999999999999999999999998
Q ss_pred eeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcC-
Q 018696 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG- 185 (351)
Q Consensus 107 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~- 185 (351)
+...++..++.++++++++|+|.+..+. .....++.++++...+++++++|+++... +...++++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~ 153 (290)
T cd01939 82 CYRKDIDEPASSYIIRSRAGGRTTIVND--NNLPEVTYDDFSKIDLTQYGWIHFEGRNP------DETLRMMQHIEEHNN 153 (290)
T ss_pred eeEcCCCCCeeEEEEEcCCCCeEEEEeC--CCCCCCCHHHHhhhhhccCCEEEEeccCH------HHHHHHHHHHHHhcC
Confidence 8666665666677777778888777763 33445676666655568999999987531 23456666677665
Q ss_pred ------CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCC
Q 018696 186 ------SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGS 259 (351)
Q Consensus 186 ------~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~ 259 (351)
+++++|+.... +.+.++++++|++++|++|++.+ +..+.++.. ....+...+++.||||+|+
T Consensus 154 ~~~~~~~~v~~d~~~~~----------~~~~~~l~~~di~~~n~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~vvvt~G~ 221 (290)
T cd01939 154 RRPEIRITISVEVEKPR----------EELLELAAYCDVVFVSKDWAQSR-GYKSPEECL-RGEGPRAKKAALLVCTWGD 221 (290)
T ss_pred cCCCcceEEEEEeccCc----------hhhhhHHhhCCEEEEEhHHHHhc-CcCCHHHHH-HhhhhhccCCcEEEEEccc
Confidence 67888886421 23457888999999999988764 543322211 1122334688999999999
Q ss_pred cceEEEec-CceeeecCccc-ccccCCCCchHHHHHHHHHHHhcC-CcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 260 KGCRYYTK-EFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAADQ-NLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 260 ~G~~~~~~-~~~~~v~~~~~-~~vd~tGaGD~f~ag~~~~l~~g~-~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
+|++++.+ ++.+++|+++. +++|||||||+|.|||++++++|+ + +++|+++|+++|++++++.|.
T Consensus 222 ~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~-------~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 222 QGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDD-------LSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred CCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCcc-------HHHHHHHHHHHHHHHHhhhcC
Confidence 99988875 46778998874 699999999999999999999999 7 999999999999999999874
No 31
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=4.8e-40 Score=298.85 Aligned_cols=280 Identities=25% Similarity=0.330 Sum_probs=220.8
Q ss_pred eEEEEccceeecccCC--CCCCCC------CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCC
Q 018696 30 LVVCFGEMLIDFVPTV--GGVSLA------EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENN 101 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~--~~~~~~------~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~g 101 (351)
+|+++|++++|+++.. ++.+.. ........+|| +.|+|.+|++||.++.++|.+|+|.+|+++++.|++.|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~g 79 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEG 79 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCC
Confidence 5899999999999864 333221 12345678999 58999999999999999999999999999999999999
Q ss_pred CCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccc------cchhhhcCccEEEEccccccCchhHHHHH
Q 018696 102 VDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESE------LDKNLIKQGSIFHYGSISLIAEPCRSTQL 175 (351)
Q Consensus 102 id~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
|+++++ ..++.+|+.++++.+. +++.+..+.. ....++.+. .....+++++++|++++. ......+.+.
T Consensus 80 I~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~-~~~~~~~~~~ 154 (304)
T cd01172 80 IDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVDRE--DDSPLSAEEEQRLIERIAERLPEADVVILSDYG-KGVLTPRVIE 154 (304)
T ss_pred CCcceE-ecCCCCceEEEEEecC-CcEEEEEecC--CCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCC-CCccCHHHHH
Confidence 999984 5567788888877764 4455544321 222232221 113457899999997642 2223446778
Q ss_pred HHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHh-cCCCeE
Q 018696 176 AAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLF-HPNLKL 252 (351)
Q Consensus 176 ~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~-~~g~~~ 252 (351)
.+++.+++.+.++++|++... ...++++|++++|++|++.+++.... ++..+.++.+. +.|++.
T Consensus 155 ~~~~~a~~~~~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~ 221 (304)
T cd01172 155 ALIAAARELGIPVLVDPKGRD-------------YSKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEA 221 (304)
T ss_pred HHHHHHHhcCCCEEEeCCCcc-------------hhhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCe
Confidence 888999999999999997531 03567999999999999999986422 23334556665 478999
Q ss_pred EEEeeCCcceEEEe-cCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 253 LIVTEGSKGCRYYT-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 253 vvvt~G~~G~~~~~-~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
||||+|++|+++++ +++.+++|+++++++|||||||+|+|||+++|++|++ +++|+++|+++|+.++++.|+
T Consensus 222 vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~-------~~~al~~a~a~Aa~~~~~~g~ 294 (304)
T cd01172 222 LLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAAGAD-------LEEAAFLANAAAGVVVGKVGT 294 (304)
T ss_pred EEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhheeeecCCC
Confidence 99999999999998 6788999999999999999999999999999999999 999999999999999999998
Q ss_pred CCCC
Q 018696 332 IPAL 335 (351)
Q Consensus 332 ~~~~ 335 (351)
.+.+
T Consensus 295 ~~~~ 298 (304)
T cd01172 295 APVT 298 (304)
T ss_pred CCcC
Confidence 7643
No 32
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=3.9e-39 Score=293.65 Aligned_cols=294 Identities=16% Similarity=0.150 Sum_probs=237.0
Q ss_pred CceEEEEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 28 DRLVVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 28 ~~~i~v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
+|-.+|.=++++|+++.++.++.. +......++||++.|+|.+|++||.++.++|++|+|.+++. .+.|++.||++
T Consensus 3 ~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~ 81 (312)
T PRK09513 3 RRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSELGIAN 81 (312)
T ss_pred ceEEEEecChHHeEEEEcCceecCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHHcCCCc
Confidence 344568889999999998887643 35578899999999999999999999999999999999986 68899999998
Q ss_pred CCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc------hhhhcCccEEEEccccccCchhHHHHHHHH
Q 018696 105 SGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD------KNLIKQGSIFHYGSISLIAEPCRSTQLAAM 178 (351)
Q Consensus 105 ~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (351)
.++ ..++ +|+.++.+++.+|+++...+ +.. .++..+++ ...+++++++|+++... .....+.+.+++
T Consensus 82 ~~~-~~~~-~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~-~~~~~~~~~~~~ 154 (312)
T PRK09513 82 RFQ-VVQG-RTRINVKLTEKDGEVTDFNF--SGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLP-RGVSPEAFTDWM 154 (312)
T ss_pred cEE-ECCC-CCEEEEEEEeCCCcEEEEeC--CCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CCCCHHHHHHHH
Confidence 765 4444 68888888877787765543 222 23333221 23578999999988643 233457778889
Q ss_pred HHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCC--hhHHHHHHHhcCCCeEEEEe
Q 018696 179 NLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKLFHPNLKLLIVT 256 (351)
Q Consensus 179 ~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~--~~~~~~~~l~~~g~~~vvvt 256 (351)
+.+++.|.++++|++.. ..+ ..+..+.|++++|++|+..+++....+ +..++++.+.+.|++.||||
T Consensus 155 ~~a~~~g~~v~~D~~~~--------~~~---~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt 223 (312)
T PRK09513 155 TRLRSQCPCIIFDSSRE--------ALV---AGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVIS 223 (312)
T ss_pred HHHHhcCCEEEEECChH--------HHH---HHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999998621 111 223457899999999999999875432 33345677888999999999
Q ss_pred eCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCC
Q 018696 257 EGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALP 336 (351)
Q Consensus 257 ~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~ 336 (351)
+|++|++++.+++.++++++.++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.+ .++|
T Consensus 224 ~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~-------~~~a~~~A~a~Aa~~~~~~~--~~~~ 294 (312)
T PRK09513 224 LGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRES-------SEHTLRLATAVSALAVSQSN--VGIT 294 (312)
T ss_pred eCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhCCC--CCCC
Confidence 99999999888777788888899999999999999999999999999 99999999999999999987 3788
Q ss_pred CHHHHHHHHhhhc
Q 018696 337 TKEAALKLLHTVA 349 (351)
Q Consensus 337 ~~~~v~~~l~~~~ 349 (351)
+.+++++++++++
T Consensus 295 ~~~e~~~~l~~~~ 307 (312)
T PRK09513 295 DRPQLAAMMARVD 307 (312)
T ss_pred CHHHHHHHHhceE
Confidence 9999999998765
No 33
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=2.8e-39 Score=294.28 Aligned_cols=294 Identities=16% Similarity=0.181 Sum_probs=232.2
Q ss_pred EEEEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 018696 31 VVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (351)
Q Consensus 31 i~v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v 107 (351)
+.+.=++.+|.++..+..+.. ....+..++||++.|+|.+|++||.++.++|.+|+| +|+++++.|++.||+++++
T Consensus 2 ~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~GV~~~~~ 80 (309)
T TIGR01231 2 LTVTLNPSVDISYPLTALKLDTVNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHSDIKHAFY 80 (309)
T ss_pred EEEEcchHHeEEEEcCCeeeCceEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHcCCceeEE
Confidence 356667889998888776654 345678999999999999999999999999999975 9999999999999999987
Q ss_pred eecCCCCCeEEEEEEecCCCceEEEecCCcccccC--Ccccc--chhhhcCccEEEEccccccCchhHHHHHHHHHHHHH
Q 018696 108 RYDSTARTALAFVTLRADGEREFLFFRHPSADMLL--CESEL--DKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (351)
Q Consensus 108 ~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~i--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 183 (351)
...+ .|++++.++. +|++++..+.. .+... ..+.+ ....+++++++|+++... ...+...+..+++.+++
T Consensus 81 ~~~~--~t~~~~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~~a~~ 154 (309)
T TIGR01231 81 KISG--ETRNCIAILH-EGQQTEILEQG--PEISNQEAAGFLKHFEQLLEKVEVVAISGSLP-KGLPQDYYAQIIERCQN 154 (309)
T ss_pred ECCC--CCEEeEEEEe-CCCEEEEeCCC--CCCCHHHHHHHHHHHHHHhccCCEEEEECCCC-CCcCHHHHHHHHHHHHh
Confidence 7543 4555655553 67777765432 22111 10111 124578999999988642 23345678889999999
Q ss_pred cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC---ChhHHHHHHHhcCCCeEEEEeeCCc
Q 018696 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH---NDDNVVLEKLFHPNLKLLIVTEGSK 260 (351)
Q Consensus 184 ~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~---~~~~~~~~~l~~~g~~~vvvt~G~~ 260 (351)
.|.++++|++.. . ...+.+.+.++|++++|++|++.+++.... ++..+.++.+...|++.|++|+|++
T Consensus 155 ~g~~v~~D~~~~--------~-~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~ 225 (309)
T TIGR01231 155 KGVPVVLDCSGA--------T-LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIVSLGAQ 225 (309)
T ss_pred CCCeEEEECChH--------H-HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCC
Confidence 999999998632 1 123344467899999999999999986432 2223345566678999999999999
Q ss_pred ceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHH
Q 018696 261 GCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEA 340 (351)
Q Consensus 261 G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~ 340 (351)
|++++.+++.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.+. +..+.++
T Consensus 226 G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~-------~~~a~~~a~a~aa~~~~~~~~--~~~~~~~ 296 (309)
T TIGR01231 226 GAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNHES-------DHDLLKKANTLGMLNAQEAQT--GHVNLNN 296 (309)
T ss_pred ceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCccc--CCCCHHH
Confidence 9999988888889999999999999999999999999999999 999999999999999998876 4568999
Q ss_pred HHHHHhhhc
Q 018696 341 ALKLLHTVA 349 (351)
Q Consensus 341 v~~~l~~~~ 349 (351)
++++.++++
T Consensus 297 ~~~~~~~i~ 305 (309)
T TIGR01231 297 YDDLFNQIE 305 (309)
T ss_pred HHHHHhceE
Confidence 999999875
No 34
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=4.4e-39 Score=285.85 Aligned_cols=259 Identities=26% Similarity=0.294 Sum_probs=209.8
Q ss_pred ceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCee
Q 018696 29 RLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVR 108 (351)
Q Consensus 29 ~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~ 108 (351)
++|+++|++++|++...+ +.++||++.|+|.+|++||.+|.++|.+|+|.+|+++++.|++.||+++++.
T Consensus 1 ~~v~~iG~~~~D~~~~~~----------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~ 70 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG----------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVH 70 (260)
T ss_pred CeEEEeccceeeecccCC----------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCcchhee
Confidence 479999999999997642 3789999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeE
Q 018696 109 YDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSIL 188 (351)
Q Consensus 109 ~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v 188 (351)
..++ +|+.+++.++ +++|.+..+. .+....+..+..+.+.+.+++++|++... ...++++.+++++.++
T Consensus 71 ~~~~-~t~~~~~~~~-~~~r~~~~~~-~~~~~~~~~~~~~~~~l~~~~~v~~~~~~--------~~~~~~~~~~~~~~~v 139 (260)
T PRK09813 71 TKHG-VTAQTQVELH-DNDRVFGDYT-EGVMADFALSEEDYAWLAQYDIVHAAIWG--------HAEDAFPQLHAAGKLT 139 (260)
T ss_pred eecC-CCceEEEEEe-CCcEEeeccC-CCcccccccCHHHHHHHHhCCEEEEeccc--------hHHHHHHHHHHcCCeE
Confidence 7665 6777777664 5777776542 22222222222233567899999986421 1235677788899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecC
Q 018696 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKE 268 (351)
Q Consensus 189 ~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 268 (351)
++|++.+.. .+.+.++++++|+++.|+.+. .....+.++++.+.|++.++||.|++|++++.++
T Consensus 140 ~~D~~~~~~--------~~~~~~~~~~~d~~~~~~~~~--------~~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~ 203 (260)
T PRK09813 140 AFDFSDKWD--------SPLWQTLVPHLDYAFASAPQE--------DEFLRLKMKAIVARGAGVVIVTLGENGSIAWDGA 203 (260)
T ss_pred EEEcCCCcc--------HHHHHHhCCceeEEEecCCcc--------hHHHHHHHHHHHHcCCCEEEEEECCCceEEEECC
Confidence 999975421 134567889999999886531 1123346677888999999999999999999988
Q ss_pred ceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 269 FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 269 ~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
+.+++|+++++++|||||||+|+|||++++.+|++ +++|+++|+++|++++++.|+
T Consensus 204 ~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~-------~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 204 QFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMT-------LPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred EEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCC
Confidence 88999999999999999999999999999999999 999999999999999999885
No 35
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.7e-39 Score=290.82 Aligned_cols=276 Identities=25% Similarity=0.354 Sum_probs=222.3
Q ss_pred EEEEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 018696 31 VVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (351)
Q Consensus 31 i~v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v 107 (351)
|+++|++++|+++..+..|.. ........+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++.+
T Consensus 2 v~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~ 81 (288)
T cd01941 2 IVVIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLNVRGI 81 (288)
T ss_pred eEEEEeEEEeeeecccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCcccee
Confidence 899999999999888775543 12356788999999999999999999999999999999999999999999999988
Q ss_pred eecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc--hhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcC
Q 018696 108 RYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (351)
Q Consensus 108 ~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 185 (351)
. .++.+|+.++++++.+|++.+... ++.....++.+.++ ...+..++++++++. .+.+.+..+++.+++.+
T Consensus 82 ~-~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~~~~~~~~~a~~~~ 154 (288)
T cd01941 82 V-FEGRSTASYTAILDKDGDLVVALA-DMDIYELLTPDFLRKIREALKEAKPIVVDAN-----LPEEALEYLLALAAKHG 154 (288)
T ss_pred e-eCCCCcceEEEEECCCCCEEEEEe-chHhhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHHHHhhhhcC
Confidence 7 667789999999888888876332 23333333332221 345789999987542 24456778888899999
Q ss_pred CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCC--hhHHHHHHHhcCCCeEEEEeeCCcceE
Q 018696 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKLFHPNLKLLIVTEGSKGCR 263 (351)
Q Consensus 186 ~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~--~~~~~~~~l~~~g~~~vvvt~G~~G~~ 263 (351)
.++++||.... ..++ +.++++++|++++|++|+..+++....+ .....++.+...|++.+++|.|++|++
T Consensus 155 ~~v~~d~~~~~-------~~~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~ 226 (288)
T cd01941 155 VPVAFEPTSAP-------KLKK-LFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGVL 226 (288)
T ss_pred CcEEEEccchH-------Hhcc-chhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcEE
Confidence 99999986321 1111 1157899999999999999998865432 222346677889999999999999999
Q ss_pred EEec---CceeeecC-cccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 264 YYTK---EFKGRVPG-VKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 264 ~~~~---~~~~~v~~-~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
++.+ +..+++|+ ++++++|||||||+|.|||++++++|++ +++|+++|+++|+.+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~-------~~~al~~a~~~Aa~~~~~ 288 (288)
T cd01941 227 LSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMS-------LDDSLRFAQAAAALTLES 288 (288)
T ss_pred EEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcC
Confidence 9887 46678898 5889999999999999999999999999 999999999999999863
No 36
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=1.3e-39 Score=297.74 Aligned_cols=278 Identities=18% Similarity=0.245 Sum_probs=226.6
Q ss_pred eEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHc-CC--Ce--EEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRL-GG--SS--AFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l-G~--~v--~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
+++++|++++|++...++ ..+...+||++.|+|+++++| |. ++ .+++.+|+| +|+++++.|++.||++
T Consensus 1 ~~~~~G~~~~d~i~~~~~------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~ 73 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWGTGM 73 (328)
T ss_pred CccccCcEEeeccccCCC------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcCCce
Confidence 378999999999998763 345688999999999999999 54 77 889999999 9999999999999999
Q ss_pred CCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHH-
Q 018696 105 SGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE- 183 (351)
Q Consensus 105 ~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~- 183 (351)
++ ...++.+|+.++++++.+|++.+.++ ...+..+++++++...+..++++|+++... ...+...++++.+++
T Consensus 74 ~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~--~~~~~~~~~~~l~~~~~~~a~~~hl~~~~~---~~~~~~~~~~~~a~~~ 147 (328)
T cd01943 74 VF-RRDPGRLTTRGLNIYDGNDRRFFKYL--TPKKRIDVSDDLNSTPLIRSSCIHLICSPE---RCASIVDDIINLFKLL 147 (328)
T ss_pred EE-EeCCCCcchhhhhhcCCCCcceeeec--CcccccccccccccccccCCCeEEEECCHH---HHHHHHHHHHHHHHhh
Confidence 98 77778899998888888888877664 344566777777766688999999976431 123677788888888
Q ss_pred -----cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChh--HH-H-------HHHHhcC
Q 018696 184 -----SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDD--NV-V-------LEKLFHP 248 (351)
Q Consensus 184 -----~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~--~~-~-------~~~l~~~ 248 (351)
.+.++++||+.... .. ..++.+.++++++|++++|++|+..+++....++. .. . ..++...
T Consensus 148 ~~d~~~g~~~~~d~~~~~~---~~-~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
T cd01943 148 KGNSPTRPKIVWEPLPDSC---DP-ENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQD 223 (328)
T ss_pred ccccCCccEEEEecCCccc---Ch-hhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhcc
Confidence 78889999863211 11 13456788999999999999999999987653221 11 1 1123467
Q ss_pred CCeEEEEeeCCcceEEEe--cCceeeecCccc---ccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHh
Q 018696 249 NLKLLIVTEGSKGCRYYT--KEFKGRVPGVKT---KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGA 323 (351)
Q Consensus 249 g~~~vvvt~G~~G~~~~~--~~~~~~v~~~~~---~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa 323 (351)
+++.||||+|++|++++. +++.+++|++++ +++|||||||+|+|||+++|++|++ +++|+++|+++|+
T Consensus 224 g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~-------~~~al~~a~a~Aa 296 (328)
T cd01943 224 PGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALTKS-------IDEACIYGSVAAS 296 (328)
T ss_pred CCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH
Confidence 899999999999999988 456788999988 9999999999999999999999999 9999999999999
Q ss_pred HHhcccCC
Q 018696 324 LTVTERGA 331 (351)
Q Consensus 324 ~~i~~~g~ 331 (351)
+++++.|.
T Consensus 297 ~~v~~~G~ 304 (328)
T cd01943 297 FAIEQVGL 304 (328)
T ss_pred HHHccCCC
Confidence 99999995
No 37
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=1.1e-38 Score=289.67 Aligned_cols=285 Identities=27% Similarity=0.319 Sum_probs=227.6
Q ss_pred cceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCC
Q 018696 36 EMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST 112 (351)
Q Consensus 36 ~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~ 112 (351)
++.+|+++.+++.+.. ........+||.+.|+|.++++||.++.++|.+|+| +|+.+++.|++.||++.+++...
T Consensus 7 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~~~~- 84 (303)
T TIGR03168 7 NPAIDLTIEVDGLTPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVEVKG- 84 (303)
T ss_pred chHHeEEEEcCccccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEECCC-
Confidence 3456777666654321 344677999999999999999999999999999999 79999999999999999887642
Q ss_pred CCCeEEEEEEecCCCceEEEecCCcccccCCccccch------hhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCC
Q 018696 113 ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS 186 (351)
Q Consensus 113 ~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 186 (351)
.|++++.+.+.+|++....+ ... .++.++++. +.+++++++|+++... .....+....+++.+++.+.
T Consensus 85 -~t~~~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~g~ 158 (303)
T TIGR03168 85 -ETRINVKIKESSGEETELNE--PGP--EISEEELEQLLEKLRELLASGDIVVISGSLP-PGVPPDFYAQLIAIARKRGA 158 (303)
T ss_pred -CCEEeEEEEeCCCCEEEEeC--cCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCC-CCCCHHHHHHHHHHHHHCCC
Confidence 56667776777776654433 222 255554431 3478999999987532 22345677788899999999
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcceEE
Q 018696 187 ILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKGCRY 264 (351)
Q Consensus 187 ~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G~~~ 264 (351)
++++||+.. . ..+.+..++|++++|++|+..+++.... ++..++++.+.+.|++.+|||+|++|+++
T Consensus 159 ~v~~D~~~~--------~---~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~ 227 (303)
T TIGR03168 159 KVILDTSGE--------A---LREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGADGALL 227 (303)
T ss_pred EEEEECCcH--------H---HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCcEE
Confidence 999999631 1 1122335899999999999999987543 23345677788899999999999999999
Q ss_pred EecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHHH
Q 018696 265 YTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKL 344 (351)
Q Consensus 265 ~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~ 344 (351)
+.+++.+++|+++++++|++||||+|.|+|++++++|++ +++|+++|+++|+.++++.|+. .|+.++++++
T Consensus 228 ~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~-------i~~a~~~A~~~aa~~~~~~G~~--~~~~~~~~~~ 298 (303)
T TIGR03168 228 VTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLS-------LEEALRFAVAAGSAAAFSPGTG--LPDPEDVEEL 298 (303)
T ss_pred EeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCcC--CCCHHHHHHH
Confidence 998888899999999999999999999999999999999 9999999999999999999984 5899999999
Q ss_pred Hhhh
Q 018696 345 LHTV 348 (351)
Q Consensus 345 l~~~ 348 (351)
+.++
T Consensus 299 ~~~~ 302 (303)
T TIGR03168 299 LDQV 302 (303)
T ss_pred Hhhc
Confidence 8875
No 38
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.1e-38 Score=290.28 Aligned_cols=294 Identities=22% Similarity=0.239 Sum_probs=235.3
Q ss_pred eEEEEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~ 106 (351)
-+.+.=++.+|+++.++..+.. ........+||++.|+|.+|++||.++.+++.+|+ .+|+.+++.|++.||++++
T Consensus 4 i~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~ 82 (309)
T PRK10294 4 IYTLTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVAT 82 (309)
T ss_pred EEEEecChHHeEEEEeCceeeCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCCceE
Confidence 4677889999999999887543 45667888999999999999999999999999997 6999999999999999999
Q ss_pred eeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccch-----hhhcCccEEEEccccccCchhHHHHHHHHHHH
Q 018696 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK-----NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (351)
Q Consensus 107 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 181 (351)
+...+. .++..++..+.+|++.+..+ ++.. ++.+.++. ..++.++++++++... ...+.+.+.++++.+
T Consensus 83 ~~~~~~-~~~~~~i~~~~~g~~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~a 156 (309)
T PRK10294 83 VEAKDW-TRQNLHVHVEASGEQYRFVM--PGAA--LNEDEFRQLEEQVLEIESGAILVISGSLP-PGVKLEKLTQLISAA 156 (309)
T ss_pred EECCCC-CeeeEEEEEcCCCcEEEEEC--CCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCCHHHHHHHHHHH
Confidence 877654 34444555667787665543 3322 44443332 2367889999987543 333457888999999
Q ss_pred HHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhcCC-CeEEEEeeC
Q 018696 182 KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFHPN-LKLLIVTEG 258 (351)
Q Consensus 182 ~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~~g-~~~vvvt~G 258 (351)
++.|.++++|++.. ..+..+ .++++|++++|++|+..+++.... ++..++++.+++.+ ++.||||+|
T Consensus 157 ~~~g~~v~~D~~~~--------~~~~~~--~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G 226 (309)
T PRK10294 157 QKQGIRCIIDSSGD--------ALSAAL--AIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLG 226 (309)
T ss_pred HHcCCeEEEeCCCH--------HHHHHH--hcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 99999999998521 111111 246899999999999999986533 23345677788776 889999999
Q ss_pred CcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCH
Q 018696 259 SKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTK 338 (351)
Q Consensus 259 ~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~ 338 (351)
++|++++.+++.+++++++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|+.+ ...
T Consensus 227 ~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~-------~~~al~~a~a~aa~~v~~~G~~~--~~~ 297 (309)
T PRK10294 227 PQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQGTRL--CSH 297 (309)
T ss_pred CCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCC--CCH
Confidence 999999988877889998999999999999999999999999999 99999999999999999999864 688
Q ss_pred HHHHHHHhhhc
Q 018696 339 EAALKLLHTVA 349 (351)
Q Consensus 339 ~~v~~~l~~~~ 349 (351)
++++++++++.
T Consensus 298 ~~~~~~~~~~~ 308 (309)
T PRK10294 298 DDTQKIYAYLS 308 (309)
T ss_pred HHHHHHHHHhc
Confidence 99999888764
No 39
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=2.9e-38 Score=285.01 Aligned_cols=275 Identities=26% Similarity=0.292 Sum_probs=222.8
Q ss_pred eEEEEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~ 106 (351)
-..|+|++++|+++.+++.+.. ........+||++.|+|.+|++||.+|.++|.+|+| +|+.+++.|++.||++.+
T Consensus 2 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~ 80 (289)
T cd01164 2 IYTVTLNPAIDLTIELDQLQPGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIPDDF 80 (289)
T ss_pred EEEEecChHHeEEEEcCcccCCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCCceE
Confidence 4689999999999999987643 355678999999999999999999999999999999 899999999999999998
Q ss_pred eeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccch------hhhcCccEEEEccccccCchhHHHHHHHHHH
Q 018696 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNL 180 (351)
Q Consensus 107 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (351)
+... .+|++.+.+.+.++++..... ... .++.++++. +.+++++++|+++... .....+....+++.
T Consensus 81 ~~~~--~~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~ 153 (289)
T cd01164 81 VEVA--GETRINVKIKEEDGTETEINE--PGP--EISEEELEALLEKLKALLKKGDIVVLSGSLP-PGVPADFYAELVRL 153 (289)
T ss_pred EECC--CCCEEEEEEEeCCCCEEEEeC--CCC--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CCcCHHHHHHHHHH
Confidence 8764 346777777766665554432 222 244443321 3467899999987532 22234677788888
Q ss_pred HHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhh-hcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEee
Q 018696 181 AKESGSILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTE 257 (351)
Q Consensus 181 a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l-~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~ 257 (351)
+++.+.++++|++.. . +.+++ +++|++++|++|++.+++.... ++..++++.+.+.+++.++||+
T Consensus 154 ~~~~~~~i~~D~~~~--------~----~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~ 221 (289)
T cd01164 154 AREKGARVILDTSGE--------A----LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSL 221 (289)
T ss_pred HHHcCCeEEEECChH--------H----HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 999999999998631 1 12333 6999999999999999986532 3344567788889999999999
Q ss_pred CCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 258 GSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 258 G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
|++|++++.+++.+++++++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+
T Consensus 222 G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 222 GADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLS-------LEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred CCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCccC
Confidence 9999999988888889999999999999999999999999999999 999999999999999999874
No 40
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=1.2e-37 Score=299.15 Aligned_cols=291 Identities=21% Similarity=0.212 Sum_probs=226.3
Q ss_pred CceEEEEccceeecccCCC--CC----C--CCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHH
Q 018696 28 DRLVVCFGEMLIDFVPTVG--GV----S--LAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKE 99 (351)
Q Consensus 28 ~~~i~v~G~~~iD~~~~~~--~~----~--~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~ 99 (351)
+++|+|+|++++|+++..+ +. | ..........+|| +.|+|.+|++||.+|.++|.+|+|.+|+++++.|++
T Consensus 10 ~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~ 88 (473)
T PRK11316 10 RAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAA 88 (473)
T ss_pred CCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 5679999999999998642 22 1 1234567888999 599999999999999999999999999999999999
Q ss_pred CCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc---hhhhcCccEEEEccccccCchhHHHHHH
Q 018696 100 NNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD---KNLIKQGSIFHYGSISLIAEPCRSTQLA 176 (351)
Q Consensus 100 ~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
.||+++++.+ ++.+|++++++++.++.... ...+. ....+..+.+. ...+.++++++++++.. ...+....
T Consensus 89 ~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~---~~~~~~~~ 162 (473)
T PRK11316 89 VGVKCDFVSV-PTHPTITKLRVLSRNQQLIR-LDFEE-GFEGVDPQPLLERIEQALPSIGALVLSDYAK---GALASVQA 162 (473)
T ss_pred cCCceeEEEc-CCCCCCeeEEEEeCCceEEe-ccccc-CCCchhHHHHHHHHHHHhccCCEEEEecCCc---cchhHHHH
Confidence 9999998876 56788888888765443221 11111 11112233221 34578999999876532 12345778
Q ss_pred HHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC-ChhHHHHHHHh-cCCCeEEE
Q 018696 177 AMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH-NDDNVVLEKLF-HPNLKLLI 254 (351)
Q Consensus 177 ~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~-~~~~~~~~~l~-~~g~~~vv 254 (351)
+++.+++.+.++++||+... ...++++|++++|+.|++.+++.... ++....+++++ +.|++.|+
T Consensus 163 ~~~~~k~~g~~vv~Dp~~~~-------------~~~~~~~dil~pN~~Ea~~l~g~~~~~~~~~~~~~~l~~~~g~~~vv 229 (473)
T PRK11316 163 MIQLARKAGVPVLIDPKGTD-------------FERYRGATLLTPNLSEFEAVVGKCKDEAELVEKGMKLIADYDLSALL 229 (473)
T ss_pred HHHHHHhcCCeEEEeCCCCC-------------ccccCCCeEECcCHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88889999999999996431 12356899999999999999985322 22223344544 68999999
Q ss_pred EeeCCcceEEEecCc-eeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCC
Q 018696 255 VTEGSKGCRYYTKEF-KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIP 333 (351)
Q Consensus 255 vt~G~~G~~~~~~~~-~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~ 333 (351)
||.|++|++++.+++ .+++|+++++++|++||||+|.|||++++++|++ +++|+++|+++|++++++.|+.+
T Consensus 230 VT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~-------~~~al~~A~a~Aa~~v~~~G~~~ 302 (473)
T PRK11316 230 VTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAGNS-------LEEACALANAAAGVVVGKLGTST 302 (473)
T ss_pred EEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhcccCCCcc
Confidence 999999998887765 5789999999999999999999999999999999 99999999999999999999864
Q ss_pred CCCCHHHHHHHHhh
Q 018696 334 ALPTKEAALKLLHT 347 (351)
Q Consensus 334 ~~~~~~~v~~~l~~ 347 (351)
++.++++++++.
T Consensus 303 --~~~~~l~~~l~~ 314 (473)
T PRK11316 303 --VSPIELENALRG 314 (473)
T ss_pred --CCHHHHHHHHhc
Confidence 689999998874
No 41
>PLN02548 adenosine kinase
Probab=100.00 E-value=3.5e-37 Score=283.21 Aligned_cols=263 Identities=19% Similarity=0.266 Sum_probs=206.5
Q ss_pred CCCccccCCChHHHHHHH---HHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCce
Q 018696 53 APAFKKAPGGAPANVAVG---ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGERE 129 (351)
Q Consensus 53 ~~~~~~~~GG~~~n~a~~---l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~ 129 (351)
.......+||++.|+|.. |+++|.++.++|.+|+|.+|+++++.|+++||+++++. .++.+|+.++++++ +|+|.
T Consensus 44 ~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~-~~~~~T~~~~i~~~-~g~r~ 121 (332)
T PLN02548 44 KYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYE-DESTPTGTCAVLVV-GGERS 121 (332)
T ss_pred cCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeec-cCCCCCceEEEEEe-cCCce
Confidence 446788999999998554 45679999999999999999999999999999999875 46678999888875 78888
Q ss_pred EEEecCCcccccCCccccc----hhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHH
Q 018696 130 FLFFRHPSADMLLCESELD----KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAA 205 (351)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~ 205 (351)
+..+ ......++.+.+. ...++.++++|++++... .+.+.+..+++.+++.+.++.+|+.. ++|. ...
T Consensus 122 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~~~~~~~~--~~~~--~~~ 193 (332)
T PLN02548 122 LVAN--LSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLT--VSPESIMLVAEHAAANNKTFMMNLSA--PFIC--EFF 193 (332)
T ss_pred eeec--cchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEcc--CCHHHHHHHHHHHHHcCCEEEEECCC--hhHH--HHh
Confidence 7654 3333334444332 335788999999886442 23467778888899999888888753 2232 234
Q ss_pred HHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHHHHhc------CCCeEEEEeeCCcceEEEecCceeeecCc-
Q 018696 206 REGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFH------PNLKLLIVTEGSKGCRYYTKEFKGRVPGV- 276 (351)
Q Consensus 206 ~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~~l~~------~g~~~vvvt~G~~G~~~~~~~~~~~v~~~- 276 (351)
.+.+.++++++|++++|++|+..+++.... ++..+.++++.+ .+++.||||+|++|++++.+++.+++|++
T Consensus 194 ~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~ 273 (332)
T PLN02548 194 KDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIP 273 (332)
T ss_pred HHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEecccc
Confidence 566888899999999999999999885332 222233333332 25789999999999999988888888764
Q ss_pred --ccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCC
Q 018696 277 --KTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 332 (351)
Q Consensus 277 --~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~ 332 (351)
+++++|||||||+|.|||++++++|++ +++|+++|+++|++++++.|+.
T Consensus 274 ~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------l~eal~~a~aaAa~~v~~~G~~ 324 (332)
T PLN02548 274 LPKEKLVDTNGAGDAFVGGFLSQLVQGKD-------IEECVRAGNYAANVIIQRSGCT 324 (332)
T ss_pred CCcCccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCC
Confidence 347999999999999999999999999 9999999999999999999986
No 42
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=265.28 Aligned_cols=291 Identities=25% Similarity=0.342 Sum_probs=240.3
Q ss_pred EEEEccceeecccCCCCCCCC---CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 018696 31 VVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (351)
Q Consensus 31 i~v~G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v 107 (351)
+.+.=++.+|+++..+..... +......++||+|.|||+.|+.||.++..+|++|.+ .|++|.+.|++.||...++
T Consensus 3 ~TvTLNPaiD~~~~l~~l~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv 81 (310)
T COG1105 3 YTVTLNPALDYTVFLDELELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFV 81 (310)
T ss_pred EEEecChhHhheeecccccccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEE
Confidence 566667889999888766543 466778999999999999999999999999999998 9999999999999999999
Q ss_pred eecCCCCCeEEEEEEec-CCCceEEEecCCcccccCCccccch------hhhcCccEEEEccccccCchhHHHHHHHHHH
Q 018696 108 RYDSTARTALAFVTLRA-DGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNL 180 (351)
Q Consensus 108 ~~~~~~~t~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (351)
.+....+... -+.+. ++..+-+. .+++. ++.+++.. ..+++.|++.++|- +....+.+.+.++++.
T Consensus 82 ~v~g~TRinv--ki~~~~~~~~Tein--~~Gp~--is~~~~~~~l~~~~~~l~~~d~VvlsGS-lP~g~~~d~y~~li~~ 154 (310)
T COG1105 82 EVKGDTRINV--KILDEEDGEETEIN--FPGPE--ISEAELEQFLEQLKALLESDDIVVLSGS-LPPGVPPDAYAELIRI 154 (310)
T ss_pred EccCCCeeeE--EEEecCCCcEEEec--CCCCC--CCHHHHHHHHHHHHHhcccCCEEEEeCC-CCCCCCHHHHHHHHHH
Confidence 8876655544 44444 33233222 24443 66665542 34788898888773 4556678999999999
Q ss_pred HHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCC--hhHHHHHHHhcCCCeEEEEeeC
Q 018696 181 AKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKLFHPNLKLLIVTEG 258 (351)
Q Consensus 181 a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~--~~~~~~~~l~~~g~~~vvvt~G 258 (351)
+++.|+++++|.. .+.+.+.++. .+.+++||.+|++.+++....+ +....+++++..|++.|||++|
T Consensus 155 ~~~~g~~vilD~S--------g~~L~~~L~~---~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG 223 (310)
T COG1105 155 LRQQGAKVILDTS--------GEALLAALEA---KPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLG 223 (310)
T ss_pred HHhcCCeEEEECC--------hHHHHHHHcc---CCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 9999999999963 4444444443 6999999999999999987653 3445677799999999999999
Q ss_pred CcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCH
Q 018696 259 SKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTK 338 (351)
Q Consensus 259 ~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~ 338 (351)
.+|+++.++++.+++.++++++++++||||++.|||+++++++++ +++++++|+++++.++++.+. +.++.
T Consensus 224 ~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~-------~e~~l~~avA~g~a~~~~~~~--~~~~~ 294 (310)
T COG1105 224 ADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGKS-------LEEALRFAVACGAAAASQKGT--GIPDL 294 (310)
T ss_pred CcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhcCCC--CCCCH
Confidence 999999999999999999999999999999999999999999999 999999999999999999987 66899
Q ss_pred HHHHHHHhhhc
Q 018696 339 EAALKLLHTVA 349 (351)
Q Consensus 339 ~~v~~~l~~~~ 349 (351)
++++++++++.
T Consensus 295 ~~~~~~~~~v~ 305 (310)
T COG1105 295 DQLKKIYAQVT 305 (310)
T ss_pred HHHHHHhhheE
Confidence 99999988764
No 43
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.9e-36 Score=272.73 Aligned_cols=273 Identities=24% Similarity=0.292 Sum_probs=218.1
Q ss_pred CCceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~ 106 (351)
..++|+++|++++|++....+ .....+||++.|+|.+|++||.++.++|.+|+|.. .+++...
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g~-------~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~----------~~v~~~~ 72 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNGS-------VTAESLGGAASFISNVLDALSVECELVSKVGPDFL----------YQVSHPP 72 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCCc-------EEEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc----------ccccccc
Confidence 356899999999999987532 14578999999999999999999999999999941 3677655
Q ss_pred eeecCCCCCeEEEEEEec-----CCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHH
Q 018696 107 VRYDSTARTALAFVTLRA-----DGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (351)
Q Consensus 107 v~~~~~~~t~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 181 (351)
+.. ++.+|+.+++++++ ++++++..+ .+++..+++++++...+..++.+++.+ +...+....+++.+
T Consensus 73 ~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~--~ga~~~l~~~di~~~~~~~~~~~~l~~-----ei~~e~~~~~~~~a 144 (335)
T PLN02630 73 IVI-PDSKTTEFHADFDQGIDGNGHEDRVLKR--VCACDPIEPSDIPDMRYEFGMAVGVAG-----EILPETLERMVEIC 144 (335)
T ss_pred eec-CCCCceEEEEEEcCCcccCCCCeEEEEe--ccccCCCChHHCCHHHhcccceeeecC-----CCcHHHHHHHHHHh
Confidence 533 67789999888765 457776654 778888988888654577777776643 22356778888888
Q ss_pred HH-----cCCeEEEcCCCC-CCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEE
Q 018696 182 KE-----SGSILSYDPNLR-LPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIV 255 (351)
Q Consensus 182 ~~-----~~~~v~~d~~~~-~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvv 255 (351)
+. ++..+++||... .++|... ...+.++++++|++++|++|+..+ +. . .+.+. ..|+|
T Consensus 145 ~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l----~~---~----~~~~~--~~vvv 208 (335)
T PLN02630 145 DVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI----DV---E----EVRQK--CCVIV 208 (335)
T ss_pred hhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc----CH---H----HHccC--CEEEE
Confidence 87 789999999763 3444211 123677899999999999999876 11 1 11222 37999
Q ss_pred eeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCC
Q 018696 256 TEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPAL 335 (351)
Q Consensus 256 t~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~ 335 (351)
|+|++|++++.+++.+++|+++++++|+|||||+|+|||++++++|++ +++|+++|+++|++++++.|. ..
T Consensus 209 t~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~-------~~~a~~~A~a~aa~~v~~~G~--~~ 279 (335)
T PLN02630 209 TNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLA-------VPDAALLGNYFGSLAVEQVGI--PK 279 (335)
T ss_pred EECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCcCCC--CC
Confidence 999999999998888899999999999999999999999999999999 999999999999999999995 34
Q ss_pred CCHHHHHHHHhhhc
Q 018696 336 PTKEAALKLLHTVA 349 (351)
Q Consensus 336 ~~~~~v~~~l~~~~ 349 (351)
.+.+++++++++++
T Consensus 280 ~~~~~l~~~~~~i~ 293 (335)
T PLN02630 280 FDLRQLQRVKDEVQ 293 (335)
T ss_pred CCHHHHHHHhhcEE
Confidence 59999999988764
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=5.6e-36 Score=265.15 Aligned_cols=254 Identities=23% Similarity=0.275 Sum_probs=197.6
Q ss_pred eEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~ 109 (351)
+|+++|++++|++...+ +....+||++.|+|.+|++||.++.++|.+|+|..|+ ++.|++.||++.. .
T Consensus 1 ~il~iG~~~iD~~~~~~--------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~~--~ 68 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG--------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFDNGIEVIS--L 68 (254)
T ss_pred CeEEEcceeEEEEecCC--------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHHCCcEEEE--e
Confidence 58999999999998642 3468899999999999999999999999999998898 6889999998642 2
Q ss_pred cCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEE
Q 018696 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189 (351)
Q Consensus 110 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~ 189 (351)
....|+.+++.++.+|++.+..+. ......... ...+.+++++|++++. .+....+.+.+ .+++
T Consensus 69 -~~~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~----~~v~ 132 (254)
T cd01937 69 -LSTETTTFELNYTNEGRTRTLLAK--CAAIPDTES---PLSTITAEIVILGPVP------EEISPSLFRKF----AFIS 132 (254)
T ss_pred -cCCCeEEEEEEecCCCCeeeeecc--ccCCccccc---ccccCcccEEEECCCc------chhcHHHHhhh----hhee
Confidence 334666666667767777776653 222222111 2357889999998652 22333333222 7899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCc
Q 018696 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEF 269 (351)
Q Consensus 190 ~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 269 (351)
+|++.....|.. ....+.++++++|++++|++|+..+ ....+.++++.+.|++.++||.|++|++++++++
T Consensus 133 ~D~~~~~~~~~~---~~~~~~~~l~~~di~~~n~~E~~~~------~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~ 203 (254)
T cd01937 133 LDAQGFLRRANQ---EKLIKCVILKLHDVLKLSRVEAEVI------STPTELARLIKETGVKEIIVTDGEEGGYIFDGNG 203 (254)
T ss_pred Eccccceeeccc---cchHHHhhcccCcEEEEcHHHHhhc------CCHHHHHHHHHHcCCCEEEEeeCCcceEEEECCc
Confidence 999754222221 1223577899999999999999983 1233466778889999999999999999999888
Q ss_pred eeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhc
Q 018696 270 KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 327 (351)
Q Consensus 270 ~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~ 327 (351)
.+++++++++++|+|||||+|.|+|++++++|++ +++|+++|+++|+++++
T Consensus 204 ~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 204 KYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKD-------IKEAAEFAAAAAAKFIE 254 (254)
T ss_pred cEEccccCceeccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999999 99999999999999875
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.7e-35 Score=265.27 Aligned_cols=272 Identities=21% Similarity=0.307 Sum_probs=206.3
Q ss_pred EEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeec
Q 018696 31 VVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYD 110 (351)
Q Consensus 31 i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~ 110 (351)
|+++|++++|++..... .....+||++.|+|.+|++|| ++.++|.+|+| +++.+++.|++.||+++++.+.
T Consensus 2 v~~~G~~~~D~~~~~~~-------~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~ 72 (277)
T cd01946 2 LLVVGSVAFDAIETPFG-------KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSK 72 (277)
T ss_pred eEEEEEeeeeeecCCCc-------eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEe
Confidence 89999999999943221 245779999999999999998 69999999999 8999999999999999999887
Q ss_pred CCCCCeEEEEEEe--cCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeE
Q 018696 111 STARTALAFVTLR--ADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSIL 188 (351)
Q Consensus 111 ~~~~t~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v 188 (351)
++.+|........ .++.+..... ......+.+ .+ ...+++++++|++++ ..+...++++.+++. .++
T Consensus 73 ~~~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~-~~~~~~~~~v~~~~~------~~~~~~~~~~~~~~~-~~v 141 (277)
T cd01946 73 EDGKTFHWAGRYHYDLNEADTLDTD--LNVFADFDP-QL-PEHYKDSEFVFLGNI------APELQREVLEQVKDP-KLV 141 (277)
T ss_pred cCCCeEEEeeEehhhcccccchhhh--hhHHhhcCC-CC-hHHhhcCCEEEECCC------CHHHHHHHHHHHHhC-CEE
Confidence 7666632111110 0122211110 111111222 12 345788999999764 235566777778776 889
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcceEEEecC
Q 018696 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKE 268 (351)
Q Consensus 189 ~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 268 (351)
++||. .+|. ....+.+.++++++|++++|++|++.+++.. ...+.++.+.+.|++.||+|+|.+|++++.++
T Consensus 142 ~~D~~---~~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~---~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 213 (277)
T cd01946 142 VMDTM---NFWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAA---NLVKAARLILAMGPKALIIKRGEYGALLFTDD 213 (277)
T ss_pred EEccH---HHhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCc---hHHHHHHHHHHcCCCEEEEecCCCcEEEEECC
Confidence 99983 2342 1234567788999999999999999998853 33446678889999999999999999999888
Q ss_pred ceeeecCcccc-cccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCC
Q 018696 269 FKGRVPGVKTK-AVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 332 (351)
Q Consensus 269 ~~~~v~~~~~~-~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~ 332 (351)
+.+++|+++++ ++|||||||+|.|||+++|++|++. ...++++|+++|+++|+++|++.|+.
T Consensus 214 ~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~~--~~~~~~~a~~~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 214 GYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKDT--SEANMRRAIIYGSAMASFCVEDFGTK 276 (277)
T ss_pred ceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCCc--chhhHHHHHHHhHHHHhhhhhhcCCC
Confidence 88889998875 8999999999999999999998531 12348999999999999999999864
No 46
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=236.71 Aligned_cols=285 Identities=20% Similarity=0.261 Sum_probs=226.7
Q ss_pred EEEEccceeecccCCCCCCCC------------------------CCCCccccCCChHHHHHHHHHHcCC---CeEEEee
Q 018696 31 VVCFGEMLIDFVPTVGGVSLA------------------------EAPAFKKAPGGAPANVAVGISRLGG---SSAFVGK 83 (351)
Q Consensus 31 i~v~G~~~iD~~~~~~~~~~~------------------------~~~~~~~~~GG~~~n~a~~l~~lG~---~v~~v~~ 83 (351)
.+.+|++++|+...++..... +....+..+||++.|.++++++++. ++.++|.
T Consensus 9 l~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~Gs 88 (343)
T KOG2854|consen 9 LVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGS 88 (343)
T ss_pred eeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEee
Confidence 677999999999877632110 1225689999999999999999987 8999999
Q ss_pred cCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc----hhhhcCccEEE
Q 018696 84 LGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD----KNLIKQGSIFH 159 (351)
Q Consensus 84 vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~----~~~i~~~~~~~ 159 (351)
+|.|++|+.+++.+++.||++.+. +.++.+|++|.++++.++ |+..-+ .++...++.++++ +..++.+.++|
T Consensus 89 vG~Dk~ge~l~~~~~~aGv~~~yq-~~~d~~TGtCavli~~~n-RSL~an--LgAAn~f~~dhl~~~~~~~lveka~v~y 164 (343)
T KOG2854|consen 89 VGKDKFGELLKSKARAAGVNVHYQ-VKEDGPTGTCAVLITGDN-RSLCAN--LGAANCFKVDHLDKEENWALVEKAKVFY 164 (343)
T ss_pred ccCchHHHHHHHHHHhcCceEEEE-eccCCCCceEEEEEeCCC-cchhhc--cchhhccCHHHhcchhhhhhhhheeEEE
Confidence 999999999999999999999865 456779999999998777 666543 6677778777774 35789999999
Q ss_pred EccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCCh--
Q 018696 160 YGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHND-- 237 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~-- 237 (351)
++++.+ ...++.+..+.+.+.+.+.+.+++.+... -++.+.+.+.++++++|+++.|++|++.+......+.
T Consensus 165 v~Gffl--tv~p~ai~~v~qh~~e~~r~~~lnlsapf----I~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~d 238 (343)
T KOG2854|consen 165 VAGFFL--TVSPDAIRKVAQHAAENNRVFTLNLSAPF----ISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKD 238 (343)
T ss_pred EEEEEE--EeChHHHHHHHHHHHHhcchhheeccchh----HHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccc
Confidence 999865 33457888888888888776666654221 1345677888899999999999999999876543221
Q ss_pred hHHHHHH---Hhc---CCCeEEEEeeCCcceEEEecCceeeecCccc---ccccCCCCchHHHHHHHHHHHhcCCcccch
Q 018696 238 DNVVLEK---LFH---PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT---KAVDTTGAGDSFVSGILNCLAADQNLIKDE 308 (351)
Q Consensus 238 ~~~~~~~---l~~---~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~---~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~ 308 (351)
..+.... +-+ ...+.++||.|..+++...+++.+.+|..++ +++||+||||+|.+||++.|.+|++
T Consensus 239 v~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~----- 313 (343)
T KOG2854|consen 239 VKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKS----- 313 (343)
T ss_pred hHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCC-----
Confidence 1111112 222 3467899999999999998887776666654 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhcccCCC
Q 018696 309 NRLREALLFANACGALTVTERGAI 332 (351)
Q Consensus 309 ~~~~~a~~~a~~~Aa~~i~~~g~~ 332 (351)
+++|++.|+.+|+..+...|..
T Consensus 314 --l~~cir~g~~aa~~vi~~~G~~ 335 (343)
T KOG2854|consen 314 --LEECIRAGSYAASHVIRRVGCT 335 (343)
T ss_pred --HHHHHHHHHHHhhheeeccCCC
Confidence 9999999999999999999863
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-31 Score=234.80 Aligned_cols=287 Identities=25% Similarity=0.279 Sum_probs=227.4
Q ss_pred CceEEEEccceeecccCCCC------CCC--CCCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHH
Q 018696 28 DRLVVCFGEMLIDFVPTVGG------VSL--AEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKE 99 (351)
Q Consensus 28 ~~~i~v~G~~~iD~~~~~~~------~~~--~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~ 99 (351)
..+|+|+|++++|.+.+... .|. .........+||+ .|+|.+++.||.++.++|.+|.|..|+.+.+.|..
T Consensus 10 ~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGGA-aNVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~~ 88 (467)
T COG2870 10 QAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGGA-ANVAKNIASLGANAYLVGVVGKDEAGKALIELLKA 88 (467)
T ss_pred CCcEEEEcceeeeeeccccccccCCCCCCceEEecccccccccH-HHHHHHHHHcCCCEEEEEeeccchhHHHHHHHHHh
Confidence 56899999999999986532 222 1455778999999 89999999999999999999999999999999999
Q ss_pred CCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc---hhhhcCccEEEEccccccCchhHHHHHH
Q 018696 100 NNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD---KNLIKQGSIFHYGSISLIAEPCRSTQLA 176 (351)
Q Consensus 100 ~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
.+|+.. +...++++|.+...+...+.+..-.-+ + ..........+. ...+.+++.+++|.+.-. ... -...
T Consensus 89 ~~i~~~-l~~~~~r~T~~K~Rv~s~nQQllRvD~-E-e~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG--~L~-~~q~ 162 (467)
T COG2870 89 NGIDSD-LLRDKNRPTIVKLRVLSRNQQLLRLDF-E-EKFPIEDENKLLEKIKNALKSFDALVLSDYAKG--VLT-NVQK 162 (467)
T ss_pred cCcccc-eEeecCCCceeeeeeecccceEEEecc-c-ccCcchhHHHHHHHHHHHhhcCCEEEEeccccc--cch-hHHH
Confidence 999955 556778899999988764443222211 1 111111111111 356789999999987521 111 1567
Q ss_pred HHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChh-HHHHHHHh-cCCCeEEE
Q 018696 177 AMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDD-NVVLEKLF-HPNLKLLI 254 (351)
Q Consensus 177 ~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~-~~~~~~l~-~~g~~~vv 254 (351)
+++.|++.++++.+||-... .+.+..+.++.||..|++...|....++. .+..++|. +.+...++
T Consensus 163 ~I~~ar~~~~pVLvDPKg~D-------------f~~Y~GAtLiTPN~~E~~~~vg~~~~e~el~~~g~kL~~~~~L~alL 229 (467)
T COG2870 163 MIDLAREAGIPVLVDPKGKD-------------FEKYRGATLITPNLKEFEEAVGKCKSEEELEERGQKLKEELDLSALL 229 (467)
T ss_pred HHHHHHHcCCcEEECCCCcc-------------hhhhCCCeecCCCHHHHHHHHcccccHHHHHHHHHHHHHhhCcceEE
Confidence 89999999999999996431 23467999999999999999998876542 33345555 47889999
Q ss_pred EeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCC
Q 018696 255 VTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPA 334 (351)
Q Consensus 255 vt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~ 334 (351)
||++++|+.+++.++..|+|+...++-|.|||||+-+|.|.++++.|.+ +++|..+||+||+..+...|+.
T Consensus 230 vTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~laaG~s-------~~eAc~lAN~AagiVVgKlGTa-- 300 (467)
T COG2870 230 VTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALAAGAS-------LEEACELANAAAGIVVGKLGTA-- 300 (467)
T ss_pred EEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHHHHHcCCC-------HHHHHHHhhhhcceEEeeccce--
Confidence 9999999999998888999999999999999999999999999999999 9999999999999999999974
Q ss_pred CCCHHHHHH
Q 018696 335 LPTKEAALK 343 (351)
Q Consensus 335 ~~~~~~v~~ 343 (351)
..+.+|+..
T Consensus 301 tvs~~EL~n 309 (467)
T COG2870 301 TVSPEELEM 309 (467)
T ss_pred eecHHHHHh
Confidence 467888776
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.2e-28 Score=197.71 Aligned_cols=279 Identities=21% Similarity=0.275 Sum_probs=210.0
Q ss_pred CceEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCC
Q 018696 28 DRLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (351)
Q Consensus 28 ~~~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid 103 (351)
+..|+++|.+.+|++-.++..|.+ +..+-...-||.+.|++.+|+.||.+|.++|.+......+++++.|++.|||
T Consensus 4 ~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgId 83 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGID 83 (308)
T ss_pred cceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCCC
Confidence 457999999999999877766654 3345678899999999999999999999999999888999999999999999
Q ss_pred CCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHH
Q 018696 104 TSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (351)
Q Consensus 104 ~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 183 (351)
+++.......+...++++....|.|++.++ ..+....+.+++..-.+.+..|+|+.+.. +.+.+ +++....+
T Consensus 84 ishcpftd~~pp~ssiI~~r~s~trTil~~--dks~p~vT~~dF~kvdl~qy~WihfE~Rn-----p~etl-kM~~~I~~ 155 (308)
T KOG2947|consen 84 ISHCPFTDHSPPFSSIIINRNSGTRTILYC--DKSLPDVTATDFEKVDLTQYGWIHFEARN-----PSETL-KMLQRIDA 155 (308)
T ss_pred cccCccccCCCCcceEEEecCCCceEEEEe--cCCCccccHHHhhhcccceeeeEEEecCC-----hHHHH-HHHHHHHH
Confidence 999988877565555555556777887776 44556678888776678999999998753 33333 22322222
Q ss_pred --------cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCC-eEEE
Q 018696 184 --------SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL-KLLI 254 (351)
Q Consensus 184 --------~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~-~~vv 254 (351)
.++.+++|... .++.+..++...|+++.+.+=++.+.=....+..+.+..+..+-+. +.+|
T Consensus 156 ~N~r~pe~qrI~vSvd~en----------~req~~~l~am~DyVf~sK~~a~~~gfks~rea~~~l~~r~~~~~pkpv~I 225 (308)
T KOG2947|consen 156 HNTRQPEEQRIRVSVDVEN----------PREQLFQLFAMCDYVFVSKDVAKHLGFKSPREACEGLYGRVPKGKPKPVLI 225 (308)
T ss_pred hhcCCCccceEEEEEEecC----------cHHHHHHHhhcccEEEEEHHHHhhhccCCHHHHHHHHHhhcccCCCCcEEE
Confidence 34667777632 2456677889999999998877765322222222222222222233 3678
Q ss_pred EeeCCcceEEEe-cCceeeecCcc-cccccCCCCchHHHHHHHHHH-HhcCCcccchHHHHHHHHHHHHHHhHHhcccCC
Q 018696 255 VTEGSKGCRYYT-KEFKGRVPGVK-TKAVDTTGAGDSFVSGILNCL-AADQNLIKDENRLREALLFANACGALTVTERGA 331 (351)
Q Consensus 255 vt~G~~G~~~~~-~~~~~~v~~~~-~~~vd~tGaGD~f~ag~~~~l-~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~ 331 (351)
+.++.+|+-... +++.+++++++ .++||+.|+||+|.|||+|++ .++.+ +.||+.||+++|+.++...|.
T Consensus 226 ~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~-------l~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 226 CPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRS-------LAEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred eccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhh-------HHHHHHHHHHhhhcccccccc
Confidence 889999986654 55778899985 589999999999999999995 55776 999999999999999988875
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.96 E-value=5.6e-28 Score=205.41 Aligned_cols=189 Identities=31% Similarity=0.427 Sum_probs=158.3
Q ss_pred eEEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCC
Q 018696 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (351)
Q Consensus 30 ~i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~ 105 (351)
+|+++|++++|+++.++..|.. +.......+||.|.|+|.+|++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-----------------------
Confidence 4899999999999998876654 3557789999999999999999999999999
Q ss_pred CeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcC
Q 018696 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (351)
Q Consensus 106 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 185 (351)
++++|+++.... .+...++++.+++.+
T Consensus 58 -------------------------------------------------~~~v~i~~~~~~----~~~~~~~~~~~~~~~ 84 (196)
T cd00287 58 -------------------------------------------------ADAVVISGLSPA----PEAVLDALEEARRRG 84 (196)
T ss_pred -------------------------------------------------ccEEEEecccCc----HHHHHHHHHHHHHcC
Confidence 788888875321 356778888999999
Q ss_pred CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCC--hhHHHHHHHhcCCCeEEEEeeCCcceE
Q 018696 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKLFHPNLKLLIVTEGSKGCR 263 (351)
Q Consensus 186 ~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~--~~~~~~~~l~~~g~~~vvvt~G~~G~~ 263 (351)
.++++||......|.. ..+.++++++|++++|.+|++.+++....+ +..+.++++.+.+++.+++|.|++|++
T Consensus 85 ~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~ 159 (196)
T cd00287 85 VPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVTLGEKGAI 159 (196)
T ss_pred CeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcCCCEEEEEECCCccE
Confidence 9999999876544421 125677899999999999999999875543 223467788889999999999999999
Q ss_pred EEe-cCceeeecCcccccccCCCCchHHHHHHHHHHH
Q 018696 264 YYT-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 299 (351)
Q Consensus 264 ~~~-~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~ 299 (351)
++. +++.+++|+++++++|++||||+|+|||+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 160 VATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred EEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 998 777888998888999999999999999999874
No 50
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.82 E-value=4.2e-19 Score=156.90 Aligned_cols=225 Identities=16% Similarity=0.185 Sum_probs=150.0
Q ss_pred CeEEEeecCCChHHHH-HHHHHHH---CCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhh
Q 018696 77 SSAFVGKLGDDEFGYM-LANILKE---NNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLI 152 (351)
Q Consensus 77 ~v~~v~~vG~D~~g~~-i~~~l~~---~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i 152 (351)
+..+++.-|.|+.|-. +...++- +|+ .+..+.+++...+..|. .+.. .....+ .++++ .+
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~~~~--------~~~~~~t~~t~~~~~G~-~v~~----~~~~~l-~~~l~--~l 66 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTRNGL--------HGFVAVTCLTAMTEKGF-EVFP----VDKEIF-QQQLD--SL 66 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHHcCC--------ccCeeeEEEecccCCce-EEEE----CCHHHH-HHHHH--Hh
Confidence 3466888888876533 5555543 333 24455566555566663 3221 111111 12221 12
Q ss_pred cCcc--EEEEccccccCchhHHHHHHHHHHHH-HcCCeEEEcCCCCCCCCC--CHHHHHHHHHHhhhcCcEEEeCHHHHh
Q 018696 153 KQGS--IFHYGSISLIAEPCRSTQLAAMNLAK-ESGSILSYDPNLRLPLWP--SEEAAREGIMSIWDQADIIKVSDDEIT 227 (351)
Q Consensus 153 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~v~~d~~~~~~~~~--~~~~~~~~~~~~l~~~dvl~~N~~E~~ 227 (351)
...+ .+.++.+ . ..+....+++..+ +.+.++++||.++...|. +.+...+.+.++++++|++++|+.|++
T Consensus 67 ~~~~~~~i~~G~l--~---~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~ 141 (253)
T PRK12413 67 KDVPFSAIKIGLL--P---NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAE 141 (253)
T ss_pred hCCCCCEEEECCc--C---CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHH
Confidence 2333 3333332 1 1233444444444 468899999998887773 345566677778999999999999999
Q ss_pred hhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcc-----eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 018696 228 FLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKG-----CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 300 (351)
Q Consensus 228 ~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G-----~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~ 300 (351)
.++|.... ++..++++++.+.|++.|+||.|++| ..++..++..+++.+++..+|++||||+|.|+|++++++
T Consensus 142 ~L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~ 221 (253)
T PRK12413 142 LLSGKEIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGCTFASSIASQLVK 221 (253)
T ss_pred HHhCcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCCEEEEEeecccCCCCCChHHHHHHHHHHHHHc
Confidence 99996543 23445678888999999999999864 223333444455666777899999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHhHHhccc
Q 018696 301 DQNLIKDENRLREALLFANACGALTVTER 329 (351)
Q Consensus 301 g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
|++ +++|+++|.++...++++.
T Consensus 222 g~~-------l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 222 GKS-------PLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999988888764
No 51
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.82 E-value=7.1e-19 Score=155.58 Aligned_cols=167 Identities=21% Similarity=0.106 Sum_probs=130.3
Q ss_pred cCccEEEEccccccCchhHHHHHHHHHHHHHc--CCeEEEcCCCCC--CCCCCHHHHHHHHHHhhh-cCcEEEeCHHHHh
Q 018696 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKES--GSILSYDPNLRL--PLWPSEEAAREGIMSIWD-QADIIKVSDDEIT 227 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~v~~d~~~~~--~~~~~~~~~~~~~~~~l~-~~dvl~~N~~E~~ 227 (351)
...+++..+. +......+.+.++++.++++ +.++++||.... .+|...++..+.+.+++. ++|++++|..|++
T Consensus 71 ~~~~~v~~G~--l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAVLTGY--LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEEEEec--CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 4567765443 23455678888899998887 899999997532 344334556677777777 9999999999999
Q ss_pred hhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCc------ceEEEecCceeeecCcccc-cccCCCCchHHHHHHHHHH
Q 018696 228 FLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSK------GCRYYTKEFKGRVPGVKTK-AVDTTGAGDSFVSGILNCL 298 (351)
Q Consensus 228 ~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~------G~~~~~~~~~~~v~~~~~~-~vd~tGaGD~f~ag~~~~l 298 (351)
.+++.... ++..+.++++.+.|++.|+||.|.. |++++.+++.++++.+.++ ++|++|+||+|.|+|++++
T Consensus 149 ~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l 228 (254)
T cd01173 149 LLTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARL 228 (254)
T ss_pred HHcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHHH
Confidence 99997543 3445567888899999999999985 7887776655555555455 7999999999999999999
Q ss_pred HhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 299 AADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 299 ~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
++|++ +++|+++|++....+++.
T Consensus 229 ~~g~~-------~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 229 LKGKS-------LAEALEKALNFVHEVLEA 251 (254)
T ss_pred HcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999 999999999998877754
No 52
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.81 E-value=3e-18 Score=152.38 Aligned_cols=226 Identities=17% Similarity=0.115 Sum_probs=151.7
Q ss_pred EEEeecCCChHHHH-H---HHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcC
Q 018696 79 AFVGKLGDDEFGYM-L---ANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQ 154 (351)
Q Consensus 79 ~~v~~vG~D~~g~~-i---~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 154 (351)
.+++.-|.|+.|-. + ...++..|++.- +..+++...+..+......+ +... .+-.+++ ...+++
T Consensus 3 ~vl~iag~D~sggaGi~aD~~t~~~lg~~~~--------~v~Ta~t~q~~~~~~~~~v~--~~~~-~~i~~q~-~~l~~d 70 (268)
T PRK12412 3 KALTIAGSDTSGGAGIQADLKTFQELGVYGM--------TSLTTIVTMDPHNGWAHNVF--PIPA-STLKPQL-ETTIEG 70 (268)
T ss_pred eEEEEEeeCCCchHHHHHHHHHHHHcCCeec--------eeeeEEEeEcCCCCcEEEEE--eCCH-HHHHHHH-HHHHhC
Confidence 35677777766532 3 345566776533 23334444433333222222 2111 1112222 233444
Q ss_pred --ccEEEEccccccCchhHHHHHHHHHHHHHcCCe-EEEcCCCCCCC---CCCHHHHHHHHHHhhhcCcEEEeCHHHHhh
Q 018696 155 --GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLRLPL---WPSEEAAREGIMSIWDQADIIKVSDDEITF 228 (351)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~~~---~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~ 228 (351)
.+.+.++.+. ..+....+.+.+++.+.+ +++||...... ....+........+++++|++++|..|++.
T Consensus 71 ~~~~~ikiG~l~-----~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~ 145 (268)
T PRK12412 71 VGVDALKTGMLG-----SVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQ 145 (268)
T ss_pred CCCCEEEECCCC-----CHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHH
Confidence 6788777542 345666777777877776 99999753221 112222233445688999999999999999
Q ss_pred hcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcce------EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 018696 229 LTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKGC------RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 300 (351)
Q Consensus 229 l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~ 300 (351)
|++.... ++..++++++.+.|++.|+||.|..|. +++.+++.++++.++++.+|++|+||+|+|+|+++|++
T Consensus 146 L~g~~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~ 225 (268)
T PRK12412 146 LSGVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAK 225 (268)
T ss_pred HhCcCCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHC
Confidence 9986533 344567788989999999999998753 34555555678888889999999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 301 DQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 301 g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
|++ +++|+++|.++...++..
T Consensus 226 g~~-------l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 226 GKP-------VKEAVKTAKEFITAAIRY 246 (268)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHH
Confidence 999 999999999999888876
No 53
>PRK05756 pyridoxamine kinase; Validated
Probab=99.80 E-value=2.3e-18 Score=154.86 Aligned_cols=168 Identities=19% Similarity=0.121 Sum_probs=130.5
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHcC--CeEEEcCCCCCC---CCCCHHHHHHHHHHhhhcCcEEEeCHHHH
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP---LWPSEEAAREGIMSIWDQADIIKVSDDEI 226 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~~~~~~---~~~~~~~~~~~~~~~l~~~dvl~~N~~E~ 226 (351)
+..++++..+. +.+....+.+.++++.+++.+ ..+++||..... .|...+........+++++|++++|..|+
T Consensus 72 l~~~~~v~~G~--l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAVLSGY--LGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEEEECC--CCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHH
Confidence 34677664443 334456678888888888765 668999986652 34333333344455899999999999999
Q ss_pred hhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCc--------ceEEEecCceeeecCccccc-ccCCCCchHHHHHHH
Q 018696 227 TFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSK--------GCRYYTKEFKGRVPGVKTKA-VDTTGAGDSFVSGIL 295 (351)
Q Consensus 227 ~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~--------G~~~~~~~~~~~v~~~~~~~-vd~tGaGD~f~ag~~ 295 (351)
+.+++.... ++..++++++.+.|++.|+||.|.. |++++.+++.++++.+.++. +|++|+||+|+|+|+
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~ 229 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFL 229 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHH
Confidence 999986533 3444567888899999999999876 57777777677777777777 799999999999999
Q ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 296 NCLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 296 ~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
+++++|++ +++|+++|++.....++.
T Consensus 230 a~l~~g~~-------~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 230 ARLLQGGS-------LEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999988875
No 54
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.80 E-value=4.6e-18 Score=150.19 Aligned_cols=163 Identities=19% Similarity=0.136 Sum_probs=127.4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCC-eEEEcCCCCC----CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS-ILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITF 228 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~ 228 (351)
+.+.+.++.+. ..+.+..+++.+++++. ++++||.... .++ +.+........+++++|++++|..|++.
T Consensus 67 ~~~aikiG~l~-----~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~-~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTGMLA-----SAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLL-EEEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEECCcC-----CHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCC-CHHHHHHHHHhccccccEecCCHHHHHH
Confidence 45677776432 34667777888888888 6999997542 222 2222233345678999999999999999
Q ss_pred hcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCC----cce-EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhc
Q 018696 229 LTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGS----KGC-RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 301 (351)
Q Consensus 229 l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~----~G~-~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g 301 (351)
|++.... ++..+.+++|.+.|++.|+||.|. +|. +++.+++.++++.++++.+|++|+||+|.|+|++++++|
T Consensus 141 L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g 220 (254)
T TIGR00097 141 LLGTKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKG 220 (254)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCC
Confidence 9986533 234456788889999999999997 344 556677777888888999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHhHHhccc
Q 018696 302 QNLIKDENRLREALLFANACGALTVTER 329 (351)
Q Consensus 302 ~~~~~~~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
++ +++|+++|++++...++..
T Consensus 221 ~~-------l~eA~~~A~~~~~~~i~~~ 241 (254)
T TIGR00097 221 LS-------LKEAVKEAKEFVTGAIRYG 241 (254)
T ss_pred CC-------HHHHHHHHHHHHHHHHHHh
Confidence 99 9999999999999999763
No 55
>PRK07105 pyridoxamine kinase; Validated
Probab=99.79 E-value=5.2e-18 Score=152.38 Aligned_cols=166 Identities=20% Similarity=0.179 Sum_probs=126.0
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCC--CCCCC-HHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL--PLWPS-EEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~--~~~~~-~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
.++.++++.+ ......+.+.++++.+++.+.++++||+... .+|.. .+...+.+.++++++|++++|..|++.++
T Consensus 75 ~~~aik~G~l--~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 152 (284)
T PRK07105 75 KFDAIYSGYL--GSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLL 152 (284)
T ss_pred ccCEEEECcC--CCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHc
Confidence 6778877653 2333445666666666767899999998643 23431 23455667789999999999999999999
Q ss_pred CCCC------CChhHHHHHHHhcCCCeEEEEee-----CCcceEEEecC--ceeeecCcccccccCCCCchHHHHHHHHH
Q 018696 231 GGDD------HNDDNVVLEKLFHPNLKLLIVTE-----GSKGCRYYTKE--FKGRVPGVKTKAVDTTGAGDSFVSGILNC 297 (351)
Q Consensus 231 ~~~~------~~~~~~~~~~l~~~g~~~vvvt~-----G~~G~~~~~~~--~~~~v~~~~~~~vd~tGaGD~f~ag~~~~ 297 (351)
+... .++..++++++.+.|++.|+||. |..|++++.++ +.++++.+.+ .+|++|+||+|.|+|+++
T Consensus 153 g~~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~-~~~~~GaGD~f~aa~~~~ 231 (284)
T PRK07105 153 DKPYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYI-PAHYPGTGDIFTSVITGS 231 (284)
T ss_pred CCCcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeeccc-CCCcCChhHHHHHHHHHH
Confidence 8653 22344567888889999999999 67788887643 3444554444 489999999999999999
Q ss_pred HHhcCCcccchHHHHHHHHHHHHHHhHHhccc
Q 018696 298 LAADQNLIKDENRLREALLFANACGALTVTER 329 (351)
Q Consensus 298 l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
+++|++ +++|+++|.+++...+++.
T Consensus 232 l~~g~~-------l~~av~~A~~~~~~~i~~~ 256 (284)
T PRK07105 232 LLQGDS-------LPIALDRAVQFIEKGIRAT 256 (284)
T ss_pred HhCCCC-------HHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999888864
No 56
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.78 E-value=1.2e-17 Score=146.70 Aligned_cols=163 Identities=17% Similarity=0.099 Sum_probs=124.4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHc-CCeEEEcCCCCCCCC---CCHHHHHHHHHHhhhcCcEEEeCHHHHhhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRLPLW---PSEEAAREGIMSIWDQADIIKVSDDEITFL 229 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~~~~~---~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 229 (351)
+.+++.++.+. ..+....+.+.+++. +.++++||......+ .+.+........+++++|++++|..|++.|
T Consensus 68 ~~~~i~~G~l~-----~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 142 (242)
T cd01169 68 PVDAIKIGMLG-----SAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELL 142 (242)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHH
Confidence 56787775431 234555666666665 889999997653321 122223334456679999999999999999
Q ss_pred cCCCCCC--hhHHHHHHHhcCCCeEEEEeeCCcc-----eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC
Q 018696 230 TGGDDHN--DDNVVLEKLFHPNLKLLIVTEGSKG-----CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ 302 (351)
Q Consensus 230 ~~~~~~~--~~~~~~~~l~~~g~~~vvvt~G~~G-----~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~ 302 (351)
++....+ +..++++++.+.|++.|+||.|++| .+++.+++.++++.++++++|++|+||+|.|+|++++++|.
T Consensus 143 ~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g~ 222 (242)
T cd01169 143 TGLEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAKGL 222 (242)
T ss_pred hCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHCCC
Confidence 9976432 3344677888899999999999875 35666667788888888899999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 303 NLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 303 ~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
+ +++|+++|++.....++.
T Consensus 223 ~-------~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 223 S-------LEEAVREAKEYVTQAIRN 241 (242)
T ss_pred C-------HHHHHHHHHHHHHHHHHc
Confidence 9 999999999988776653
No 57
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.78 E-value=5.3e-18 Score=152.50 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=124.9
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHcC--CeEEEcCCCCCC---CCCCHHHHHHHH-HHhhhcCcEEEeCHHH
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP---LWPSEEAAREGI-MSIWDQADIIKVSDDE 225 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~~~~~~---~~~~~~~~~~~~-~~~l~~~dvl~~N~~E 225 (351)
+.++++++.+.+ ......+.+.++++.+++.+ ..+++||..... +|... ...+.+ ..+++++|++++|..|
T Consensus 72 ~~~~d~v~~G~l--~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~-~~~~~~~~~ll~~adii~pN~~E 148 (286)
T TIGR00687 72 LNQCDAVLSGYL--GSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAP-DLLEVYREKAIPVADIITPNQFE 148 (286)
T ss_pred cccCCEEEECCC--CCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeCh-hHHHHHHHhccccccEecCCHHH
Confidence 457888755543 34445678888888888765 678999965432 22222 334444 4588999999999999
Q ss_pred HhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEe-eCCcce--------EEEecCceeeecCcccc-cccCCCCchHHHHH
Q 018696 226 ITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVT-EGSKGC--------RYYTKEFKGRVPGVKTK-AVDTTGAGDSFVSG 293 (351)
Q Consensus 226 ~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt-~G~~G~--------~~~~~~~~~~v~~~~~~-~vd~tGaGD~f~ag 293 (351)
++.+++.... ++..++++.+++.|++.|+|| .|.+|+ +++.+++.++++.+.++ ++|++|+||+|+|+
T Consensus 149 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A~ 228 (286)
T TIGR00687 149 LELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAAL 228 (286)
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHHH
Confidence 9999996533 334456788888999999999 687775 44555556667766666 69999999999999
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 294 ILNCLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 294 ~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
|++++++|++ +++|+++|+++...++..
T Consensus 229 ~l~~l~~g~~-------~~~al~~A~~~v~~~l~~ 256 (286)
T TIGR00687 229 LLATLLHGNS-------LKEALEKTVSAVYHVLVT 256 (286)
T ss_pred HHHHHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999995544433
No 58
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.77 E-value=2e-17 Score=147.33 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=125.3
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCC-eEEEcCCCCC----CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS-ILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITF 228 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~ 228 (351)
..+.+.++.+. ..+....+.+.+++.+. ++++||.... .++ +.+.......++++++|++++|..|++.
T Consensus 73 ~~~ai~iG~l~-----~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~-~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIGMLA-----SAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLL-ADDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEECCcC-----CHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCC-CHHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 56777776532 24556666777777775 7999997543 222 2333333344688999999999999999
Q ss_pred hcCCCCCC--h-hHHHHHHHhcCCCeEEEEeeCC--cce----EEEecCceeeecCcccccccCCCCchHHHHHHHHHHH
Q 018696 229 LTGGDDHN--D-DNVVLEKLFHPNLKLLIVTEGS--KGC----RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 299 (351)
Q Consensus 229 l~~~~~~~--~-~~~~~~~l~~~g~~~vvvt~G~--~G~----~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~ 299 (351)
|++....+ + ..++++++.+.|++.||||.|+ +|. +++.+++.++++.++++.+|++|+||+|.|+|+++++
T Consensus 147 L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 147 LTGLPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred HhCCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHH
Confidence 99865322 2 3457788889999999999998 553 5666666677888888889999999999999999999
Q ss_pred hcCCcccchHHHHHHHHHHHHHHhHHhccc
Q 018696 300 ADQNLIKDENRLREALLFANACGALTVTER 329 (351)
Q Consensus 300 ~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
+|.+ +++|+++|++.+..++++.
T Consensus 227 ~g~~-------l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 227 KGAS-------LLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred CCCC-------HHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999888773
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.76 E-value=3.1e-17 Score=146.76 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=124.1
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHH--cCCeEEEcCCCCC---CCCCCHHHHHHHH-HHhhhcCcEEEeCHHH
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE--SGSILSYDPNLRL---PLWPSEEAAREGI-MSIWDQADIIKVSDDE 225 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~v~~d~~~~~---~~~~~~~~~~~~~-~~~l~~~dvl~~N~~E 225 (351)
+.+++.++++.+. +....+.+.+.++..+. .+.++++||.... ..|.+.+. .+.+ ..+++++|++++|..|
T Consensus 86 l~~~d~i~~G~l~--s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~-~~~~~~~Ll~~advitPN~~E 162 (281)
T PRK08176 86 LRQLRAVTTGYMG--SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDL-PEAYRQHLLPLAQGLTPNIFE 162 (281)
T ss_pred cccCCEEEECCCC--CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccH-HHHHHHHhHhhcCEeCCCHHH
Confidence 3478888887542 44445566666666554 4788999997443 24433332 3344 4588999999999999
Q ss_pred HhhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcc-------eEEEecCceeeecCcccccccCCCCchHHHHHHHH
Q 018696 226 ITFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKG-------CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILN 296 (351)
Q Consensus 226 ~~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G-------~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~ 296 (351)
++.|+|.... ++..++++++.+.|++.||||.|+.| ++++.+++.+ ....+...+|++|+||+|.|+|++
T Consensus 163 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~GaGD~faa~~~a 241 (281)
T PRK08176 163 LEILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSVN-VISHPRVDTDLKGTGDLFCAELVS 241 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCceE-EEecCccCCCCCChhHHHHHHHHH
Confidence 9999996533 23445678899999999999999988 5666666544 344455567999999999999999
Q ss_pred HHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 297 CLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 297 ~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
++++|.+ +++|+++|+..-...++.
T Consensus 242 ~l~~g~~-------l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 242 GLLKGKA-------LTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred HHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999888777754
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.75 E-value=7.5e-17 Score=153.17 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHcCCeEEEcCCCCC----CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCC--ChhHHHHH
Q 018696 170 CRSTQLAAMNLAKESGSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLE 243 (351)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~ 243 (351)
..+.+..+++.+++++.++++||..+. .+| ..+........+++++|++++|..|++.++|.... ++...+++
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~-~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~ 160 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLL-REDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAK 160 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCC-CHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 357788889999999999999997653 344 23333334467889999999999999999986532 34445677
Q ss_pred HHh-cCCCeEEEEeeCC----cce-EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHH
Q 018696 244 KLF-HPNLKLLIVTEGS----KGC-RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLF 317 (351)
Q Consensus 244 ~l~-~~g~~~vvvt~G~----~G~-~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~ 317 (351)
+|. +.|++.|+||.|. +|+ +++.+++.++++.++++++|++|+||+|.|+|++++++|++ +++|+++
T Consensus 161 ~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~~-------l~eAl~~ 233 (448)
T PRK08573 161 YIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAKGLD-------PEEAIKT 233 (448)
T ss_pred HHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHH
Confidence 777 4899999999985 344 44556666788888889999999999999999999999999 9999999
Q ss_pred HHHHHhHHhcc
Q 018696 318 ANACGALTVTE 328 (351)
Q Consensus 318 a~~~Aa~~i~~ 328 (351)
|+.+...+++.
T Consensus 234 A~~~~~~al~~ 244 (448)
T PRK08573 234 AKKFITMAIKY 244 (448)
T ss_pred HHHHHHHHHHH
Confidence 99999999883
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.74 E-value=1.3e-16 Score=141.96 Aligned_cols=163 Identities=18% Similarity=0.116 Sum_probs=122.1
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcC-CeEEEcCCCCCC---CCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG-SILSYDPNLRLP---LWPSEEAAREGIMSIWDQADIIKVSDDEITFL 229 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~~~~---~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 229 (351)
..+.+.++.+. ..+....+.+.+++.+ .++++||..... .....+........+++++|++++|..|++.|
T Consensus 74 ~~~aikiG~l~-----s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L 148 (270)
T PRK12616 74 GVDAMKTGMLP-----TVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQL 148 (270)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHH
Confidence 45677766532 2345556666667665 469999986322 11122223333445788999999999999999
Q ss_pred cCC-CC--CChhHHHHHHHhcCCCeEEEEeeCCcce------EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 018696 230 TGG-DD--HNDDNVVLEKLFHPNLKLLIVTEGSKGC------RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 300 (351)
Q Consensus 230 ~~~-~~--~~~~~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~ 300 (351)
++. .. .++..++++++.+.|++.|+||.|.+|. +++.+++.++++.+.++..+++|+||+|.|+|+++|++
T Consensus 149 ~g~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~ 228 (270)
T PRK12616 149 SGMGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAK 228 (270)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHC
Confidence 985 22 2344567788889999999999998752 55666666677888888899999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 301 DQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 301 g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
|.+ +++|+++|.......+..
T Consensus 229 g~~-------l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 229 GSE-------VKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHH
Confidence 999 999999999999888876
No 62
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.67 E-value=3.5e-15 Score=134.64 Aligned_cols=163 Identities=18% Similarity=0.137 Sum_probs=115.8
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcC--CeEEEcCCC--CCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNL--RLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFL 229 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~~~--~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 229 (351)
..+++..+.+. +....+.+.++++.+++.+ +++++||.. +..+|. .+...+.+.++++++|++++|+.|++.+
T Consensus 77 ~~~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L 153 (296)
T PTZ00344 77 DYTYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLL 153 (296)
T ss_pred cCCEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHH
Confidence 34555555432 3333455555666555554 589999865 334453 4567777888999999999999999999
Q ss_pred cCCCCC--ChhHHHHHHHhcCCCeEEEEe---eCCcc----eEEEe--c----CceeeecCcccccccCCCCchHHHHHH
Q 018696 230 TGGDDH--NDDNVVLEKLFHPNLKLLIVT---EGSKG----CRYYT--K----EFKGRVPGVKTKAVDTTGAGDSFVSGI 294 (351)
Q Consensus 230 ~~~~~~--~~~~~~~~~l~~~g~~~vvvt---~G~~G----~~~~~--~----~~~~~v~~~~~~~vd~tGaGD~f~ag~ 294 (351)
+|.... ++..++++++.+.|++.|||| .|..| +++.. . ++.+.+..+.++ ++++|+||+|.|+|
T Consensus 154 ~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~~ 232 (296)
T PTZ00344 154 SGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAALL 232 (296)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHHH
Confidence 997533 234456788888899999999 55555 44432 1 234455555555 57799999999999
Q ss_pred HHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 295 LNCLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 295 ~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
++.+++| + +++|+++|.+....+++.
T Consensus 233 ~a~l~~g-~-------~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 233 LAFSHQH-P-------MDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred HHHHhcC-C-------HHHHHHHHHHHHHHHHHH
Confidence 9888888 8 999999999888777665
No 63
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.64 E-value=4.7e-15 Score=133.27 Aligned_cols=234 Identities=22% Similarity=0.302 Sum_probs=160.7
Q ss_pred EEEEccceeecccCCCCCCCC----CCCCccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 018696 31 VVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (351)
Q Consensus 31 i~v~G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~ 106 (351)
-+++|...+|.....+...+. ......+..||.+.|.|.++++||.++.+++++|+|.
T Consensus 343 Pv~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~------------------ 404 (614)
T KOG3009|consen 343 PVSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDN------------------ 404 (614)
T ss_pred ceeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCC------------------
Confidence 399999999999888764432 2335678999999999999999999999999999992
Q ss_pred eeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCC
Q 018696 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS 186 (351)
Q Consensus 107 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 186 (351)
+++ +++..+.. +. +...+++ +++++.+++ +.+.....++++ ++++..
T Consensus 405 ------------------n~~----~~~~~~~~--~~--e~~~dl~-~a~~I~~Ds-----NiS~~~Ma~il~-ak~~k~ 451 (614)
T KOG3009|consen 405 ------------------NGH----FFRQNSHK--IV--ESNEDLL-SADFILLDS-----NISVPVMARILE-AKKHKK 451 (614)
T ss_pred ------------------cch----hhhhhhhh--hh--hhhhhhh-cCCEEEEcC-----CCCHHHHHHHHH-hhhccC
Confidence 111 00001111 10 1112233 788887765 345567777777 899999
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHHhh-hcCcEEEeCHHHHhhhcCCCC-------C---ChhHHHHH---HHhcCCCeE
Q 018696 187 ILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVSDDEITFLTGGDD-------H---NDDNVVLE---KLFHPNLKL 252 (351)
Q Consensus 187 ~v~~d~~~~~~~~~~~~~~~~~~~~~l-~~~dvl~~N~~E~~~l~~~~~-------~---~~~~~~~~---~l~~~g~~~ 252 (351)
+++|.|.... .....+..++ ..++.+++|..|+-....... . +...+.++ .........
T Consensus 452 ~V~fEPTd~~-------k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~ 524 (614)
T KOG3009|consen 452 QVWFEPTDID-------KVKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSI 524 (614)
T ss_pred ceEecCCCch-------hhhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHHHhhcccce
Confidence 9999996432 2333444332 368999999999854322111 1 11112222 223356678
Q ss_pred EEEeeCCcceEEEecC-----ceeeecCccc--ccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHH
Q 018696 253 LIVTEGSKGCRYYTKE-----FKGRVPGVKT--KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALT 325 (351)
Q Consensus 253 vvvt~G~~G~~~~~~~-----~~~~v~~~~~--~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~ 325 (351)
+++|.-.+|++...++ +....|++.. ++++..|+||+|.++|+++++++.+ +.+++.-+..|+..-
T Consensus 525 ~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~-------v~es~~gg~~~~ral 597 (614)
T KOG3009|consen 525 FIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKT-------VVESLQGGQECARAL 597 (614)
T ss_pred EEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcCcc-------hHhhccccHHHHHHH
Confidence 9999999999887655 3444555543 7999999999999999999999999 999999997776665
Q ss_pred hccc
Q 018696 326 VTER 329 (351)
Q Consensus 326 i~~~ 329 (351)
++..
T Consensus 598 ls~s 601 (614)
T KOG3009|consen 598 LSTS 601 (614)
T ss_pred Hhcc
Confidence 5543
No 64
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.61 E-value=2.9e-14 Score=137.71 Aligned_cols=164 Identities=17% Similarity=0.133 Sum_probs=123.4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCe-EEEcCCCCC---CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLRL---PLWPSEEAAREGIMSIWDQADIIKVSDDEITFL 229 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~---~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 229 (351)
..+.+.++.+. ..+.+..+++.+++.+.+ +++||.... ..+.+.+.......++++++|+++||..|++.|
T Consensus 78 ~~~aik~G~l~-----~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L 152 (502)
T PLN02898 78 PVDVVKTGMLP-----SAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASAL 152 (502)
T ss_pred CCCEEEECCcC-----CHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHH
Confidence 35666666532 256667777777777775 999996422 122222222223346889999999999999999
Q ss_pred cCCCC---CChhHHHHHHHhcCCCeEEEEeeCCcc------eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 018696 230 TGGDD---HNDDNVVLEKLFHPNLKLLIVTEGSKG------CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 300 (351)
Q Consensus 230 ~~~~~---~~~~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~ 300 (351)
++... .++..+.++++.+.|++.|+||.|..+ .+++.+++.++++.++++.+|++|+||+|.|+|++++++
T Consensus 153 ~g~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~ 232 (502)
T PLN02898 153 LGGDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELAK 232 (502)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHHc
Confidence 97532 234455678888999999999999753 255565566778888888899999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHhHHhccc
Q 018696 301 DQNLIKDENRLREALLFANACGALTVTER 329 (351)
Q Consensus 301 g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
|++ +++|+++|......++.+.
T Consensus 233 G~~-------l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 233 GSD-------MLSAVKVAKRYVETALEYS 254 (502)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHhh
Confidence 999 9999999999999999764
No 65
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.60 E-value=3.1e-14 Score=137.65 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEcCCCC----CCCCCC--HHHHHHHH-HHhhhcCcEEEeCHHHHhhhcCCCC---CChhHH
Q 018696 171 RSTQLAAMNLAKESGSILSYDPNLR----LPLWPS--EEAAREGI-MSIWDQADIIKVSDDEITFLTGGDD---HNDDNV 240 (351)
Q Consensus 171 ~~~~~~~~~~a~~~~~~v~~d~~~~----~~~~~~--~~~~~~~~-~~~l~~~dvl~~N~~E~~~l~~~~~---~~~~~~ 240 (351)
.+.+..+.+.++ +.++++||... ..++.. .+...+.+ ..+++++|+++||..|++.|+|... .++...
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~ 388 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEARA 388 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHHH
Confidence 455555555554 57899999764 222221 11122233 3678999999999999999999642 223445
Q ss_pred HHHHHhcCCCeEEEEeeCCcc-------eEEEec--CceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHH
Q 018696 241 VLEKLFHPNLKLLIVTEGSKG-------CRYYTK--EFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRL 311 (351)
Q Consensus 241 ~~~~l~~~g~~~vvvt~G~~G-------~~~~~~--~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~ 311 (351)
+++.+.+.|++.||||.|..| .+++.+ ++.++++.++++++|++|+||+|+|+|++++++|.+ +
T Consensus 389 aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la~G~~-------l 461 (504)
T PTZ00347 389 AAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAISSFLARGYT-------V 461 (504)
T ss_pred HHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHHHHHhCCCC-------H
Confidence 678888899999999999863 334442 356778888888999999999999999999999999 9
Q ss_pred HHHHHHHHHHHhHHhcc
Q 018696 312 REALLFANACGALTVTE 328 (351)
Q Consensus 312 ~~a~~~a~~~Aa~~i~~ 328 (351)
++|+++|.+.-...+..
T Consensus 462 ~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 462 PDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998888877765
No 66
>PLN02978 pyridoxal kinase
Probab=99.60 E-value=1.4e-13 Score=124.66 Aligned_cols=163 Identities=17% Similarity=0.062 Sum_probs=116.1
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHH--cCCeEEEcCCCCC--CCCCCHHHHHHHHH-HhhhcCcEEEeCHHHHhhh
Q 018696 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKE--SGSILSYDPNLRL--PLWPSEEAAREGIM-SIWDQADIIKVSDDEITFL 229 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~v~~d~~~~~--~~~~~~~~~~~~~~-~~l~~~dvl~~N~~E~~~l 229 (351)
++.+.++.+ .+....+.+.++++.++. .++++++||.... .+|... ...+.+. .+++++|++++|..|++.+
T Consensus 87 ~~ai~~G~l--~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~-~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGYI--GSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPP-ELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEeccc--CCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCCh-hHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 566655432 244556778888888776 4578999998654 344333 4445554 5899999999999999999
Q ss_pred cCCCCCC--hhHHHHHHHhcCCCeEEEEeeCC-cceEEEec---------CceeeecCcccccccCCCCchHHHHHHHHH
Q 018696 230 TGGDDHN--DDNVVLEKLFHPNLKLLIVTEGS-KGCRYYTK---------EFKGRVPGVKTKAVDTTGAGDSFVSGILNC 297 (351)
Q Consensus 230 ~~~~~~~--~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~ 297 (351)
+|....+ +..++++++.+.|++.||||.+. +|.+.... ++.+++..+.++.. ++|+||+|+|.+++.
T Consensus 164 ~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA~laa~ 242 (308)
T PLN02978 164 TGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAALLLGW 242 (308)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHHHHHHH
Confidence 9965332 33456788888999999998754 34332211 24556666666555 589999999988888
Q ss_pred HHhc-CCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 298 LAAD-QNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 298 l~~g-~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
+++| .+ +++|++.|.......++.
T Consensus 243 l~~g~~~-------l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 243 SHKYPDN-------LDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HhcCCcC-------HHHHHHHHHHHHHHHHHH
Confidence 8887 68 999999998887766665
No 67
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.54 E-value=1.6e-12 Score=111.88 Aligned_cols=162 Identities=17% Similarity=0.109 Sum_probs=124.9
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcC-CeEEEcCCCCCC---CCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG-SILSYDPNLRLP---LWPSEEAAREGIMSIWDQADIIKVSDDEITFL 229 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~~~~---~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 229 (351)
..+.+-++.+. ..+.+..+.+..++++ .++++||....+ .....+.......+++++++++.||..|++.|
T Consensus 72 ~v~avKtGML~-----~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L 146 (263)
T COG0351 72 PVDAVKTGMLG-----SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEAL 146 (263)
T ss_pred CCCEEEECCcC-----CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHH
Confidence 34556555432 3567777888888888 779999954221 12234444455558999999999999999999
Q ss_pred cCC-CC--CChhHHHHHHHhcCCCeEEEEeeCCcc----eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC
Q 018696 230 TGG-DD--HNDDNVVLEKLFHPNLKLLIVTEGSKG----CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ 302 (351)
Q Consensus 230 ~~~-~~--~~~~~~~~~~l~~~g~~~vvvt~G~~G----~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~ 302 (351)
+|. .. .++..++++.+.+.|++.|+||-|... -++|.++..+.++.+.++-.++.|+|++|.|++.+.|++|.
T Consensus 147 ~g~~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 147 SGLPKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred cCCCccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHcCC
Confidence 995 32 334445567777899999999988743 35566667778888889999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhHHhc
Q 018696 303 NLIKDENRLREALLFANACGALTVT 327 (351)
Q Consensus 303 ~~~~~~~~~~~a~~~a~~~Aa~~i~ 327 (351)
+ +++|++.|-..-..+++
T Consensus 227 ~-------l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 227 S-------LEEAVKKAKEFVTRAIR 244 (263)
T ss_pred C-------HHHHHHHHHHHHHHHHh
Confidence 9 99999999988888887
No 68
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.53 E-value=2.4e-13 Score=119.34 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=112.0
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCC---CCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR---LPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~---~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
..+.+.++.+. + .+....+.+..++.+.++++||... .......+........+++++|++.||..|++.|+
T Consensus 60 ~~~aikiG~l~--~---~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~ 134 (246)
T PF08543_consen 60 KFDAIKIGYLG--S---AEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLT 134 (246)
T ss_dssp C-SEEEE-S-S--S---HHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHH
T ss_pred cccEEEEcccC--C---chhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHh
Confidence 67787776532 2 2344444455555778999999643 12233444444444459999999999999999999
Q ss_pred CCCCC--ChhHHHHHHHhcCCCeEEEEeeCCc----c---eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhc
Q 018696 231 GGDDH--NDDNVVLEKLFHPNLKLLIVTEGSK----G---CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 301 (351)
Q Consensus 231 ~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~----G---~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g 301 (351)
+.... ++..+++++|+++|++.|+||-+.. + -+++.+++.+.+..+..+..+..|.||+|.|++++.|++|
T Consensus 135 g~~i~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g 214 (246)
T PF08543_consen 135 GREINSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAKG 214 (246)
T ss_dssp TS--SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHcC
Confidence 95443 3445678999999999999998863 2 3344556666666655555789999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 302 QNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 302 ~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
.+ +++|++.|.......++.
T Consensus 215 ~~-------l~~Av~~A~~~v~~~i~~ 234 (246)
T PF08543_consen 215 YS-------LEEAVEKAKNFVRRAIKN 234 (246)
T ss_dssp SS-------HHHHHHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHHHHHH
Confidence 99 999999999888777763
No 69
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.51 E-value=4.2e-13 Score=130.31 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=112.2
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCC----CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
.+.+.++-+ .+....+.+.++++..+ +.++++||..+. .++ .+...+.+.++++++|++++|..|++.|+
T Consensus 99 ~~aikiG~l--~s~~~i~~v~~~l~~~~--~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~Lt 172 (530)
T PRK14713 99 VDAVKIGML--GDAEVIDAVRTWLAEHR--PPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVLL 172 (530)
T ss_pred CCEEEECCc--CCHHHHHHHHHHHHhCC--CCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHHh
Confidence 466666543 23333344555554332 346999997642 233 23456667789999999999999999999
Q ss_pred CCCC---CChhHHHHHHHhcCCCeEEEEeeCCc------ceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhc
Q 018696 231 GGDD---HNDDNVVLEKLFHPNLKLLIVTEGSK------GCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 301 (351)
Q Consensus 231 ~~~~---~~~~~~~~~~l~~~g~~~vvvt~G~~------G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g 301 (351)
|... .++...+++++.+.+...||||.|.. ++++..+++.++++.++++.++++|+||+|.|+|+++|++|
T Consensus 173 g~~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~G 252 (530)
T PRK14713 173 GEPPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLGRG 252 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHCC
Confidence 9653 23334456777765556899998863 23333344467788888899999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHhHHh
Q 018696 302 QNLIKDENRLREALLFANACGALTV 326 (351)
Q Consensus 302 ~~~~~~~~~~~~a~~~a~~~Aa~~i 326 (351)
.+ +++|+++|...-...+
T Consensus 253 ~~-------l~eAv~~A~~~v~~~i 270 (530)
T PRK14713 253 GD-------WAAALRWATAWLHGAI 270 (530)
T ss_pred CC-------HHHHHHHHHHHHHHHH
Confidence 99 9999999997444444
No 70
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.49 E-value=6.9e-13 Score=133.49 Aligned_cols=161 Identities=14% Similarity=0.168 Sum_probs=119.5
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHc-CCeEEEcCCCCC----CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhh
Q 018696 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITFL 229 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 229 (351)
.+.+.++.+. ..+....+.+.+++. +.++++||.... .++ + +...+.+.++++++|++++|..|++.|
T Consensus 311 ~~aiKiGmL~-----s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~-~-~~~~~~l~~Llp~adlItPN~~Ea~~L 383 (755)
T PRK09517 311 VDAVKLGMLG-----SADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL-D-ADATEALRRLAVHVDVVTPNIPELAVL 383 (755)
T ss_pred CCEEEECCCC-----CHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC-C-HHHHHHHHHHhCcccCccCCHHHHHHH
Confidence 4666666431 235556666666664 467999996532 222 2 233455667899999999999999999
Q ss_pred cCCC---CCChhHHHHHHHhcCCCeEEEEeeCC------cceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 018696 230 TGGD---DHNDDNVVLEKLFHPNLKLLIVTEGS------KGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 300 (351)
Q Consensus 230 ~~~~---~~~~~~~~~~~l~~~g~~~vvvt~G~------~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~ 300 (351)
+|.. +.++..+.++++.+.+...||||.|. .++++..+++.++++.+.++.+|++|+||+|.|+|++++++
T Consensus 384 ~g~~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La~ 463 (755)
T PRK09517 384 CGEAPAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIAA 463 (755)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHHC
Confidence 9853 22344455777776543479999983 46666655556788888899999999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHhHHhccc
Q 018696 301 DQNLIKDENRLREALLFANACGALTVTER 329 (351)
Q Consensus 301 g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
|.+ +++|++.|.......+...
T Consensus 464 G~s-------l~eAv~~A~~~v~~~i~~a 485 (755)
T PRK09517 464 GES-------VEKALEWATRWLNEALRHA 485 (755)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHhc
Confidence 999 9999999999888888653
No 71
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.46 E-value=2.2e-12 Score=114.01 Aligned_cols=160 Identities=16% Similarity=0.040 Sum_probs=113.9
Q ss_pred hhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
.+...+++.++.- +... +....+++.+++++.++++|+......... ... .+.+..++++||..|++.|+
T Consensus 74 ~~~~~d~v~ig~g-l~~~---~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~-----~~~-~~~~~~~iltPn~~E~~~L~ 143 (254)
T cd01171 74 LLERADAVVIGPG-LGRD---EEAAEILEKALAKDKPLVLDADALNLLADE-----PSL-IKRYGPVVLTPHPGEFARLL 143 (254)
T ss_pred hhccCCEEEEecC-CCCC---HHHHHHHHHHHhcCCCEEEEcHHHHHhhcC-----hhh-hccCCCEEECCCHHHHHHHh
Confidence 3567788877652 1111 566778888888899999998521100000 000 23567999999999999999
Q ss_pred CCCCCC---hhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccc
Q 018696 231 GGDDHN---DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKD 307 (351)
Q Consensus 231 ~~~~~~---~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~ 307 (351)
+....+ +..+.++++.+.+. .+||..|. +.+++++++.++++....+.++++|+||+|.|.+.+.+++|.+
T Consensus 144 g~~~~~~~~~~~~~a~~l~~~~~-~~vvlkG~-~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~---- 217 (254)
T cd01171 144 GALVEEIQADRLAAAREAAAKLG-ATVVLKGA-VTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLS---- 217 (254)
T ss_pred CCChhhhhhHHHHHHHHHHHHcC-cEEEEcCC-CCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcCCC----
Confidence 865322 22346677777764 45666775 5566665555667777788999999999998888888889999
Q ss_pred hHHHHHHHHHHHHHHhHHhccc
Q 018696 308 ENRLREALLFANACGALTVTER 329 (351)
Q Consensus 308 ~~~~~~a~~~a~~~Aa~~i~~~ 329 (351)
+.+|+++|+.+.+.+.+..
T Consensus 218 ---~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 218 ---PLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred ---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888753
No 72
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.44 E-value=6e-12 Score=109.92 Aligned_cols=165 Identities=19% Similarity=0.088 Sum_probs=116.2
Q ss_pred hhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhh--cCcEEEeCHHHH
Q 018696 149 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDEI 226 (351)
Q Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~N~~E~ 226 (351)
.+.+++++.+++..- +..+...+.+...++.+++++.++++||..... +... .+.+.+++. .+|+|++|..|+
T Consensus 44 ~~~l~~~d~vvi~~G-~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~---~~~~-~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 44 EELAKIAGALVINIG-TLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGA---TSFR-TEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred HHHHHHcCcEEEeCC-CCChHHHHHHHHHHHHHHhcCCCEEEcccccCc---chhH-HHHHHHHHhcCCCeEEcCCHHHH
Confidence 356778888877532 223444566667777788889999999964321 1111 123344455 499999999999
Q ss_pred hhhcCCCC-----------CChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHH
Q 018696 227 TFLTGGDD-----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGIL 295 (351)
Q Consensus 227 ~~l~~~~~-----------~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~ 295 (351)
..+++... .++....++++.+.+...|++| |.... ++++++.++++..+....+..|+||+|.|++.
T Consensus 119 ~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~~~~~v~GtGdtLa~aiA 196 (242)
T cd01170 119 AALAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVKNGHPLLTKITGTGCLLGAVIA 196 (242)
T ss_pred HHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEeCCCccccCCCchHHHHHHHHH
Confidence 99998643 2234456777776655568888 66665 55666677777655555667899999999999
Q ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHhHHhc
Q 018696 296 NCLAADQNLIKDENRLREALLFANACGALTVT 327 (351)
Q Consensus 296 ~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~ 327 (351)
+.+++|.+ +.+|+..|...-+.+++
T Consensus 197 a~LA~g~~-------~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 197 AFLAVGDD-------PLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHhCCCC-------HHHHHHHHHHHHHHHHH
Confidence 99999999 99999999766666654
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.39 E-value=3.7e-11 Score=107.20 Aligned_cols=174 Identities=14% Similarity=0.052 Sum_probs=116.0
Q ss_pred hhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
.+..++++.+++- +... +.+.++++.+++.+.++++|+.. ..+.........++++++||..|++.|+
T Consensus 89 ~~~~~davvig~G-l~~~---~~~~~l~~~~~~~~~pvVlDa~g--------~~l~~~~~~~~~~~~vItPN~~El~~L~ 156 (272)
T TIGR00196 89 LLERYDVVVIGPG-LGQD---PSFKKAVEEVLELDKPVVLDADA--------LNLLTYDKPKREGEVILTPHPGEFKRLL 156 (272)
T ss_pred hhccCCEEEEcCC-CCCC---HHHHHHHHHHHhcCCCEEEEhHH--------HHHHhhcccccCCCEEECCCHHHHHHHh
Confidence 4567888888663 2222 22667788888889999999841 1111111111346899999999999999
Q ss_pred CCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccch
Q 018696 231 GGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDE 308 (351)
Q Consensus 231 ~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~ 308 (351)
+.... ++..+.++++.+.. ..+|++.|..++++..++..+ +...+....+++|+||++.|.+.+.+++|.+
T Consensus 157 g~~~~~~~~~~~aa~~l~~~~-~~vVv~kG~~~~i~~~~~~~~-~~~~~~~~~~~~GaGD~lag~iaa~la~g~~----- 229 (272)
T TIGR00196 157 GLVNEIQGDRLEAAQDIAQKL-QAVVVLKGAADVIAAPDGDLW-INKTGNAALAKGGTGDVLAGLIGGLLAQNLD----- 229 (272)
T ss_pred CCchhhhhhHHHHHHHHHHHh-CCEEEEcCCCCEEEcCCCeEE-EECCCCCccCCCCchHHHHHHHHHHHhCCCC-----
Confidence 86532 23344567777653 458888999998665444444 4444567788999999966666666678998
Q ss_pred HHHHHHHHHH---HHHHhHHhcc-cCCCCCCCCHHHHHHHHhh
Q 018696 309 NRLREALLFA---NACGALTVTE-RGAIPALPTKEAALKLLHT 347 (351)
Q Consensus 309 ~~~~~a~~~a---~~~Aa~~i~~-~g~~~~~~~~~~v~~~l~~ 347 (351)
+.+|+..| ...|+..+.. .|..+ .+.+|+.+.+..
T Consensus 230 --~~~A~~~a~~~~~~a~~~~~~~~g~~~--~~~~dl~~~i~~ 268 (272)
T TIGR00196 230 --PFDAACNAAFAHGLAGDLALKNHGAYG--LTALDLIEKIPR 268 (272)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCC--cCHHHHHHHHHH
Confidence 99999777 6777766544 35332 467777766543
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.31 E-value=1e-10 Score=101.32 Aligned_cols=167 Identities=22% Similarity=0.162 Sum_probs=119.6
Q ss_pred hhcCccEEEEccccccCchhHHHHHHHHHHHHHc--CCeEEEcCCCCC--CCCCCHHHHHHHHHHhhhcCcEEEeCHHHH
Q 018696 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES--GSILSYDPNLRL--PLWPSEEAAREGIMSIWDQADIIKVSDDEI 226 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~v~~d~~~~~--~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~ 226 (351)
.+..+|.+..+. +........+.++++..++. .+.+++||.... .++...+.......++++.+|++.||..|+
T Consensus 70 ~~~~~davltGY--lgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fEL 147 (281)
T COG2240 70 KLGECDAVLTGY--LGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFEL 147 (281)
T ss_pred cccccCEEEEcc--CCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHH
Confidence 466778876554 34455667788888888886 566999995422 333333333333347899999999999999
Q ss_pred hhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCc-----ceEEEecC---ceeeecCcccccccCCCCchHHHHHHHH
Q 018696 227 TFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSK-----GCRYYTKE---FKGRVPGVKTKAVDTTGAGDSFVSGILN 296 (351)
Q Consensus 227 ~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~-----G~~~~~~~---~~~~v~~~~~~~vd~tGaGD~f~ag~~~ 296 (351)
+.|+|.... +++.++++.|.+.|++.|+||.-.+ |..++... ..+|+- +.+ ..+++|.||.|+|.|++
T Consensus 148 e~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v-~~~~~GtGDL~sallla 225 (281)
T COG2240 148 EILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLV-PFIPNGTGDLFSALLLA 225 (281)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcC-CCCCCCchHHHHHHHHH
Confidence 999998754 3445678888899999999996544 44444433 233333 222 23399999999999999
Q ss_pred HHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 297 CLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 297 ~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
.+++|.+ .++++..+..+-...++.
T Consensus 226 ~lL~g~~-------~~~al~~~~~~V~evl~~ 250 (281)
T COG2240 226 RLLEGLS-------LTQALERATAAVYEVLQE 250 (281)
T ss_pred HHHcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 9999999 999999998887776663
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.28 E-value=6.7e-10 Score=99.76 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=106.8
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHc------CCeEEEcCCCCC---CCCCC-HHHHHHHHHHhhhcCcEEEeCHH
Q 018696 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKES------GSILSYDPNLRL---PLWPS-EEAAREGIMSIWDQADIIKVSDD 224 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------~~~v~~d~~~~~---~~~~~-~~~~~~~~~~~l~~~dvl~~N~~ 224 (351)
.+++-++-+. + .+.+..+.+..+++ ..++++||.... ....+ .+......+.++++++++.||..
T Consensus 74 i~aIKiGmL~--s---~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~ 148 (321)
T PTZ00493 74 IDVVKLGVLY--S---KKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFY 148 (321)
T ss_pred CCEEEECCcC--C---HHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHH
Confidence 4667776432 2 23333333333333 224999996321 11112 22223344569999999999999
Q ss_pred HHhhhcC-----CC-CCChhHHHHHHHhc-CCCeEEEEeeCCcc----------e--EEEe-------c--------C--
Q 018696 225 EITFLTG-----GD-DHNDDNVVLEKLFH-PNLKLLIVTEGSKG----------C--RYYT-------K--------E-- 268 (351)
Q Consensus 225 E~~~l~~-----~~-~~~~~~~~~~~l~~-~g~~~vvvt~G~~G----------~--~~~~-------~--------~-- 268 (351)
|++.|++ .. ..++...++++|.+ +|++.|+||-|... + +++. + +
T Consensus 149 Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~ 228 (321)
T PTZ00493 149 ECKVILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGV 228 (321)
T ss_pred HHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccc
Confidence 9999997 21 22344556788876 79999999977631 1 2322 1 1
Q ss_pred ----ceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 269 ----FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 269 ----~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
+.+++....++..++.|.||+|.++++++|++|.+ +++|++.|...-..++..
T Consensus 229 ~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G~~-------l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 229 TYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKKHN-------ILQSCIESKKYIYNCIRY 285 (321)
T ss_pred cccceEEEEEecccCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 12345555556677899999999999999999999 999999998877777765
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.11 E-value=5.4e-09 Score=92.58 Aligned_cols=163 Identities=18% Similarity=0.121 Sum_probs=105.5
Q ss_pred hhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhh--cCcEEEeCHHHHh
Q 018696 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDEIT 227 (351)
Q Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~N~~E~~ 227 (351)
+.++.++.+++.-- ...+...+.+...++.+++++.++++||...... . ...+...++++ ++++|++|..|+.
T Consensus 50 ~~~~~~~alvi~~G-~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~---~-~~~~~~~~ll~~~~~~vItPN~~E~~ 124 (263)
T PRK09355 50 EMAKIAGALVINIG-TLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT---S-YRTEFALELLAEVKPAVIRGNASEIA 124 (263)
T ss_pred HHHHhcCceEEeCC-CCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc---h-hhHHHHHHHHHhcCCcEecCCHHHHH
Confidence 44566676666332 2344444556667777888899999999643211 1 01122233333 6899999999999
Q ss_pred hhcCCCC----------CChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHH
Q 018696 228 FLTGGDD----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNC 297 (351)
Q Consensus 228 ~l~~~~~----------~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~ 297 (351)
.|++... .++....++++.+.+...|++| |..- +++++++.+.++.-.....+.+|+||++.|.+.+.
T Consensus 125 ~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~Vvvk-G~~d-~I~~~~~~~~~~~g~~~~~~v~GtGc~L~~~iaa~ 202 (263)
T PRK09355 125 ALAGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVT-GEVD-YITDGERVVSVHNGHPLMTKVTGTGCLLSAVVAAF 202 (263)
T ss_pred HHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEE-CCCc-EEEeCCEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 9998542 1133445677777655567777 4433 33445555556533334455599999999999999
Q ss_pred HHhcCCcccchHHHHHHHHHHHHHHhHHh
Q 018696 298 LAADQNLIKDENRLREALLFANACGALTV 326 (351)
Q Consensus 298 l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i 326 (351)
++.|.+ +.+|+..|...-+.+-
T Consensus 203 lA~g~~-------~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 203 AAVEKD-------YLEAAAAACAVYGIAG 224 (263)
T ss_pred HhcCCC-------HHHHHHHHHHHHHHHH
Confidence 999998 8888888876555554
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.02 E-value=1.6e-08 Score=88.77 Aligned_cols=162 Identities=16% Similarity=0.074 Sum_probs=101.7
Q ss_pred hhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhh--cCcEEEeCHHHHhh
Q 018696 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDEITF 228 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~N~~E~~~ 228 (351)
.+..++.+.+.--.+ .+...+.+...++.+++++.|+++||..... +... .....++++ +++++.+|..|+..
T Consensus 46 ~~~~~~al~ik~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~---s~~r-~~~~~~Ll~~~~~~vITpN~~E~~~ 120 (249)
T TIGR00694 46 LAKIAGALVINIGTL-DKESIEAMIAAGKSANELGVPVVLDPVGVGA---TKFR-TETALELLSEGRFAAIRGNAGEIAS 120 (249)
T ss_pred HHHHcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEEccccccc---chhH-HHHHHHHHhhcCCceeCCCHHHHHH
Confidence 345555554432222 3334566667777788889999999964322 1111 123344555 57999999999999
Q ss_pred hcCCCC----------CChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHH
Q 018696 229 LTGGDD----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCL 298 (351)
Q Consensus 229 l~~~~~----------~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l 298 (351)
|++... .++....++++.+.+...|++| |..-. ++++++.+.+...+...-..+|.||++.+.+.+.+
T Consensus 121 L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~Vllk-G~~D~-i~~~~~~~~~~~g~~~~~~~~GtGc~LssaIaa~L 198 (249)
T TIGR00694 121 LAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVIT-GEVDY-VSDGTSVYTIHNGTELLGKITGSGCLLGSVVAAFC 198 (249)
T ss_pred HhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEeCCEEEEECCCChHHhCCccchHHHHHHHHHHH
Confidence 998541 1233445677776543356665 54443 45555555544333222225799999999999999
Q ss_pred HhcCCcccchHHHHHHHHHHHHHHhHHh
Q 018696 299 AADQNLIKDENRLREALLFANACGALTV 326 (351)
Q Consensus 299 ~~g~~~~~~~~~~~~a~~~a~~~Aa~~i 326 (351)
++|.+ +.+|+..|...-..+.
T Consensus 199 A~g~~-------~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 199 AVEED-------PLDAAISACLLYKIAG 219 (249)
T ss_pred hcCCC-------HHHHHHHHHHHHHHHH
Confidence 99998 8899888875444443
No 78
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.64 E-value=8.6e-07 Score=80.33 Aligned_cols=164 Identities=16% Similarity=0.049 Sum_probs=115.2
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCC---CCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL---PLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~---~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
.++++-.+-+ ..+....++.+.+.+. .-.++++||.... ......+-..-..+++++.+|++.+|..|+-.|.
T Consensus 92 ~C~VvKTGML--~~~~I~~vi~q~l~~~--~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll 167 (523)
T KOG2598|consen 92 KCDVVKTGML--PSPEIVKVIEQSLQKF--NIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILL 167 (523)
T ss_pred cccEEeecCc--CchHHHHHHHHHHHhh--cCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHH
Confidence 5667666543 2333333444444432 2245899994321 1111223445567789999999999999999998
Q ss_pred CCCC--------CChhHHHHHHHhcCCCeEEEEeeCCcce-----------------EEEecCceeeecCcccccccCCC
Q 018696 231 GGDD--------HNDDNVVLEKLFHPNLKLLIVTEGSKGC-----------------RYYTKEFKGRVPGVKTKAVDTTG 285 (351)
Q Consensus 231 ~~~~--------~~~~~~~~~~l~~~g~~~vvvt~G~~G~-----------------~~~~~~~~~~v~~~~~~~vd~tG 285 (351)
+... ..+....++++.+.|++.|+|+.|.-.. +++.+++.+.++.+.+....+.|
T Consensus 168 ~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~tHG 247 (523)
T KOG2598|consen 168 KKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHTHG 247 (523)
T ss_pred hhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccccC
Confidence 8421 2344456788999999999999875321 34455677788888888899999
Q ss_pred CchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 286 AGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 286 aGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
.|.++.++.+..|++|.+ +.+|++.|...--.+++.
T Consensus 248 tgCtLaSAIASnLA~g~s-------l~qAv~~ai~yvq~Ai~~ 283 (523)
T KOG2598|consen 248 TGCTLASAIASNLARGYS-------LLQAVQGAIEYVQNAIAI 283 (523)
T ss_pred ccchHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999998776666654
No 79
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.56 E-value=1.8e-06 Score=73.72 Aligned_cols=160 Identities=21% Similarity=0.145 Sum_probs=98.4
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHc--CCeEEEcCCC--CCCCCCCHHHHHHHHHH-hhhcCcEEEeCHHHH
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES--GSILSYDPNL--RLPLWPSEEAAREGIMS-IWDQADIIKVSDDEI 226 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~v~~d~~~--~~~~~~~~~~~~~~~~~-~l~~~dvl~~N~~E~ 226 (351)
+...+.+..+ + +........+.++++..++. +...++||.. ...++.+. +....-++ +.+.+|++.||..|+
T Consensus 79 ~~~Y~~vLTG-Y-~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~e-elipvYr~~i~~ladiiTPNqFE~ 155 (308)
T KOG2599|consen 79 LNKYDAVLTG-Y-LPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPE-ELIPVYRDLIIPLADIITPNQFEA 155 (308)
T ss_pred ccccceeeee-c-cCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccH-HHHHHHHHhhcchhhhcCCcchhh
Confidence 3455655433 3 22334456677777777775 4668889953 33455444 33334444 445699999999999
Q ss_pred hhhcCCCCC--ChhHHHHHHHhcCCCeEEEEeeCCcce-----EEE---ecC-ceeeecCcccccccCCCCchHHHHHHH
Q 018696 227 TFLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSKGC-----RYY---TKE-FKGRVPGVKTKAVDTTGAGDSFVSGIL 295 (351)
Q Consensus 227 ~~l~~~~~~--~~~~~~~~~l~~~g~~~vvvt~G~~G~-----~~~---~~~-~~~~v~~~~~~~vd~tGaGD~f~ag~~ 295 (351)
+.|+|.... +++.++++.|.++|++.||||...-|. ++. ..+ +.+.+.-+.+ .---||.||.|+|-++
T Consensus 156 EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki-~~~FtGTGDLfsaLLl 234 (308)
T KOG2599|consen 156 EILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKI-DGVFTGTGDLFSALLL 234 (308)
T ss_pred hhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEeccc-ceEEecccHHHHHHHH
Confidence 999997654 455567899999999999999765332 121 222 3333322222 2224899999999888
Q ss_pred HHHHhcCCcccchHHHHHHHHHHH
Q 018696 296 NCLAADQNLIKDENRLREALLFAN 319 (351)
Q Consensus 296 ~~l~~g~~~~~~~~~~~~a~~~a~ 319 (351)
+.+.+-.+ ..++..++....
T Consensus 235 a~~~~~~~----~~~l~~a~e~~l 254 (308)
T KOG2599|consen 235 AWLHESPD----NDDLSKAVEQVL 254 (308)
T ss_pred HHHhcCCC----cchHHHHHHHHH
Confidence 88776531 112555555444
No 80
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=98.19 E-value=8.2e-05 Score=69.52 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=53.5
Q ss_pred hhcCccEEEEccccccCch---------hHHHHHHHHHHHHH-cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEE
Q 018696 151 LIKQGSIFHYGSISLIAEP---------CRSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 220 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~ 220 (351)
.-..+|.+.++|+..+.+. ..+...+.++..++ .++++-+...+. .+.+-....+..+++++|.+-
T Consensus 206 i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~----~~~~l~~~i~~~ilp~vDSlG 281 (446)
T TIGR02045 206 IGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASI----QNREIRKKVVTNIFPHVDSVG 281 (446)
T ss_pred hhhcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEeccc----ccHHHHHHHHHhhcccccccc
Confidence 3456899999999876543 12333444444433 678888887653 245556666778999999999
Q ss_pred eCHHHHhhhc
Q 018696 221 VSDDEITFLT 230 (351)
Q Consensus 221 ~N~~E~~~l~ 230 (351)
+|++|+..+.
T Consensus 282 MNE~ELa~ll 291 (446)
T TIGR02045 282 MDEAEIANVL 291 (446)
T ss_pred CCHHHHHHHH
Confidence 9999999876
No 81
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.19 E-value=6.5e-05 Score=70.50 Aligned_cols=164 Identities=16% Similarity=0.131 Sum_probs=89.3
Q ss_pred cccCCChHHHHHHHHHHcCCCe--EEEeecCCChHHHHHHHHHHH-CCCCCC------Cee------ecCCCCCeEEEEE
Q 018696 57 KKAPGGAPANVAVGISRLGGSS--AFVGKLGDDEFGYMLANILKE-NNVDTS------GVR------YDSTARTALAFVT 121 (351)
Q Consensus 57 ~~~~GG~~~n~a~~l~~lG~~v--~~v~~vG~D~~g~~i~~~l~~-~gid~~------~v~------~~~~~~t~~~~~~ 121 (351)
..+.||.+..+|..|+++|.++ .++..++.. . .+.|.+ .++-.- .+. +.++.++...+++
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~lsk~-q----a~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~ 172 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLSKK-Q----AEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIF 172 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCCHH-H----HHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEE
Confidence 4589999999999999999884 445555542 2 334422 111100 000 0012233344444
Q ss_pred EecCCCc--------------eEEEecCCcccccCCccccchhhh----cCccEEEEccccccCch-----h----HHHH
Q 018696 122 LRADGER--------------EFLFFRHPSADMLLCESELDKNLI----KQGSIFHYGSISLIAEP-----C----RSTQ 174 (351)
Q Consensus 122 ~~~~g~~--------------~~~~~~~~~~~~~~~~~~i~~~~i----~~~~~~~~~~~~~~~~~-----~----~~~~ 174 (351)
..+.|.+ +++..+++........+++ .+.+ ...|.+.++|+..+.+. . .+..
T Consensus 173 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef-~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~ 251 (463)
T PRK03979 173 EFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDEL-KEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRA 251 (463)
T ss_pred EeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHH-HHHHHhhccCCCEEEEechhhhhccccccccHHHHHHHH
Confidence 3344432 2232222211111111222 1223 45899999999876552 1 1222
Q ss_pred HHHHHHH--HHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 175 LAAMNLA--KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 175 ~~~~~~a--~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
.+.++.. ...++++-+...+.. +.+-....+..+++++|.+-+|++|+..+.
T Consensus 252 ~~~i~~L~~~~~~i~iH~E~As~~----~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~ 305 (463)
T PRK03979 252 KEDIKLLKKKNKDIKIHVEFASIQ----NREIRKKIITYILPHVDSVGMDETEIANIL 305 (463)
T ss_pred HHHHHHHhhCCCCceEEEEecccc----CHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence 3333333 234788888876542 455556667789999999999999999654
No 82
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.15 E-value=0.00015 Score=67.89 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=103.2
Q ss_pred ccccCCChHHHHHHHHHHcCCCeEE-EeecCCChHHHHHHHHHHHCCCCCCCe-----e-------ecCCCCCeEEEEEE
Q 018696 56 FKKAPGGAPANVAVGISRLGGSSAF-VGKLGDDEFGYMLANILKENNVDTSGV-----R-------YDSTARTALAFVTL 122 (351)
Q Consensus 56 ~~~~~GG~~~n~a~~l~~lG~~v~~-v~~vG~D~~g~~i~~~l~~~gid~~~v-----~-------~~~~~~t~~~~~~~ 122 (351)
...+.||.+..+|..|+++|.++.+ .+..-+ +...+.|....|-.-.+ . .....+....+++-
T Consensus 86 ~~~rmGGnAgimAn~la~lg~~~Vi~~~~~ls----k~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~IfE 161 (453)
T PRK14039 86 SEIRMGGNAGIMANVLSELGASRVVPNVAVPS----KTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVFD 161 (453)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEcCCCCC----HHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEEE
Confidence 4689999999999999999999655 333222 22233442222111100 0 00011233333333
Q ss_pred ecCCC--------------ceEEEecCCcccccCCccccch---hhhcCccEEEEccccccCch------hHHHHHH---
Q 018696 123 RADGE--------------REFLFFRHPSADMLLCESELDK---NLIKQGSIFHYGSISLIAEP------CRSTQLA--- 176 (351)
Q Consensus 123 ~~~g~--------------~~~~~~~~~~~~~~~~~~~i~~---~~i~~~~~~~~~~~~~~~~~------~~~~~~~--- 176 (351)
...|. ++++...++........+.+.. +.....|.+.++|+..+.+. ..+.+.+
T Consensus 162 y~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~ 241 (453)
T PRK14039 162 FREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSLA 241 (453)
T ss_pred eCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHHH
Confidence 33332 2233222211111111222211 22237899999999876332 1223333
Q ss_pred HHHHHH--HcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCC----------CChhHHHHHH
Q 018696 177 AMNLAK--ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD----------HNDDNVVLEK 244 (351)
Q Consensus 177 ~~~~a~--~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~----------~~~~~~~~~~ 244 (351)
.++..+ ..++++-+...+. .+.+-....+..+++++|.+-+|++|+..+..... .++..+.+..
T Consensus 242 ~i~~l~~~~~~i~iH~E~As~----~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~ 317 (453)
T PRK14039 242 QLKWWKSKNEKLRIHAELGHF----ASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQ 317 (453)
T ss_pred HHHHHHhcCCCceEEEEecCc----ccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHH
Confidence 333332 2457888887653 34556667777899999999999999998765421 2222234445
Q ss_pred Hh-cCCCeEEEEee
Q 018696 245 LF-HPNLKLLIVTE 257 (351)
Q Consensus 245 l~-~~g~~~vvvt~ 257 (351)
|. +.|.+.+.|..
T Consensus 318 l~~~~~le~l~vHT 331 (453)
T PRK14039 318 LASESGLQRLIIHT 331 (453)
T ss_pred HHHHcCCCEEEEEe
Confidence 55 46887766654
No 83
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.85 E-value=0.0014 Score=56.83 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=93.7
Q ss_pred hhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhh--hcCcEEEeCHHHHhh
Q 018696 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIW--DQADIIKVSDDEITF 228 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l--~~~dvl~~N~~E~~~ 228 (351)
..+.++.+.+.--+ +.+...+.+....+.+++.++|+++||.--.. ..-..+...+++ .++++++.|..|...
T Consensus 46 ~~~~a~al~iNiGT-l~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa----s~~R~~~~~~LL~~~~~~vIrGN~sEI~a 120 (246)
T PF02110_consen 46 FASIADALVINIGT-LTDERIEAMKKAAKAANELGIPVVLDPVGVGA----SKFRTEFALELLNNYKPTVIRGNASEIAA 120 (246)
T ss_dssp HHHCTSEEEEESTT-SSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT----BHHHHHHHHHHHCHS--SEEEEEHHHHHH
T ss_pred HHHHcCEEEEECCC-CCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC----cHHHHHHHHHHHHhCCCcEEEeCHHHHHH
Confidence 34445555432111 23445678888999999999999999954321 122345556666 589999999999999
Q ss_pred hcCCCCC---------C-hhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHH
Q 018696 229 LTGGDDH---------N-DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCL 298 (351)
Q Consensus 229 l~~~~~~---------~-~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l 298 (351)
|.+.... + +....++.+.++- +.+|+-.|+.... .++.+.+.++--..-.-.-||.|+...+-+.+.+
T Consensus 121 Lag~~~~~kGVDs~~~~~~~~~~a~~lA~k~-~~vVvvTG~~D~I-sdg~~~~~i~nG~~~l~~itGtGC~lgaliaaf~ 198 (246)
T PF02110_consen 121 LAGEDSKAKGVDSGDSDEDAIEAAKQLAQKY-NCVVVVTGEVDYI-SDGNRVYRIPNGSPLLSKITGTGCMLGALIAAFL 198 (246)
T ss_dssp HHTCCCCSCSSSSSCGSHHHHHHHHHHHHHT-TSEEEEESSSEEE-EESSCEEEECSSSGGGGGSTTHHHHHHHHHHHHH
T ss_pred HhCcCCCCCCcCcCCcchHHHHHHHHHHHhc-CCEEEEecCCcEE-ECCCeEEEeCCCChHhcceeccchHHHHHHHHHH
Confidence 9875421 1 1234455655433 2366666777664 3455566666555455667999988877766666
Q ss_pred HhcCCcccchHHHHHHHHHHHHH
Q 018696 299 AADQNLIKDENRLREALLFANAC 321 (351)
Q Consensus 299 ~~g~~~~~~~~~~~~a~~~a~~~ 321 (351)
....+ +..+...|...
T Consensus 199 av~~d-------~~~aa~~a~~~ 214 (246)
T PF02110_consen 199 AVAED-------PLEAAVAAVAL 214 (246)
T ss_dssp CCCSS-------HHHHHHHHHHH
T ss_pred hcccc-------chHHHHHHHHH
Confidence 66565 55555555433
No 84
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.76 E-value=0.0029 Score=59.39 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=89.7
Q ss_pred hhcCccEEEEccccccCchhH-HHHH---HHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHH
Q 018696 151 LIKQGSIFHYGSISLIAEPCR-STQL---AAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEI 226 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~ 226 (351)
.....|.+.++|+..+.+... +.+. +.++..+..++++-+...+.. .+..+..+..+++++|-+-+|++|+
T Consensus 221 i~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~-----d~~~r~~i~~ilp~vDSlGmNE~EL 295 (453)
T PRK14038 221 IAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP-----DETVREEILGLLGKFYSVGLNEVEL 295 (453)
T ss_pred hccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc-----hHHHHHHHHhhCccccccccCHHHH
Confidence 346789999999987654322 2222 233333345788888876432 2345666667999999999999999
Q ss_pred hhhcCCC---------------CCChhHHHHHHHhc-CCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHH
Q 018696 227 TFLTGGD---------------DHNDDNVVLEKLFH-PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSF 290 (351)
Q Consensus 227 ~~l~~~~---------------~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f 290 (351)
..+.... ..++..+.+.+|++ .|.+.+.|.. .+-+++.-+.
T Consensus 296 a~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~vHT--~~y~l~i~~~--------------------- 352 (453)
T PRK14038 296 ASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHFHT--YGYYLALTKY--------------------- 352 (453)
T ss_pred HHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEEEe--cceeEEEecC---------------------
Confidence 9876411 11223334555554 6777655544 2322221110
Q ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHHHH
Q 018696 291 VSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLL 345 (351)
Q Consensus 291 ~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~l 345 (351)
++.. +++|+.+|+.+||.... .| ...++++++.-+
T Consensus 353 ---------~~~~-------~~~aL~f~~~~AaarA~-~G---~i~~~~d~~~~l 387 (453)
T PRK14038 353 ---------RGEH-------VRDALLFAALAAAAKAM-LG---NIEKIDDVRKAL 387 (453)
T ss_pred ---------CHHH-------HHHHHHHHHHHHHHHHH-cC---CCCCHHHHHHHh
Confidence 3444 89999999999998775 34 334677776643
No 85
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.74 E-value=0.0014 Score=63.60 Aligned_cols=146 Identities=13% Similarity=0.050 Sum_probs=87.5
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHh--hhcCcEEEeCHHHHhhh
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSI--WDQADIIKVSDDEITFL 229 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~--l~~~dvl~~N~~E~~~l 229 (351)
++.++.+.++.-....+ ....+++.+++.+.++++|+.- ...+... .....||.||..|+..|
T Consensus 318 ~~~~~a~viGpGlg~~~----~~~~~~~~~~~~~~P~VLDAda-----------L~ll~~~~~~~~~~VLTPh~gE~~rL 382 (508)
T PRK10565 318 LEWADVVVIGPGLGQQE----WGKKALQKVENFRKPMLWDADA-----------LNLLAINPDKRHNRVITPHPGEAARL 382 (508)
T ss_pred hhcCCEEEEeCCCCCCH----HHHHHHHHHHhcCCCEEEEchH-----------HHHHhhCccccCCeEECCCHHHHHHH
Confidence 45667777654332222 1234446667778999999842 1122110 11246999999999999
Q ss_pred cCCCCCC---hhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCccc
Q 018696 230 TGGDDHN---DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIK 306 (351)
Q Consensus 230 ~~~~~~~---~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~ 306 (351)
++....+ +....++++.+.... +||-.|..-. +.+.++..++....-...-++|.||++++.+.+.+++|.+
T Consensus 383 ~~~~~~~v~~~~~~~a~~~a~~~~~-~vvlKG~~~i-I~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~~--- 457 (508)
T PRK10565 383 LGCSVAEIESDRLLSARRLVKRYGG-VVVLKGAGTV-IAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQKLS--- 457 (508)
T ss_pred hCCChhhhhhhHHHHHHHHHHHhCC-EEEEeCCCcE-EEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCC---
Confidence 9844221 222345555544323 3444666443 4443333444443344556699999999988888888988
Q ss_pred chHHHHHHHHHHHHH
Q 018696 307 DENRLREALLFANAC 321 (351)
Q Consensus 307 ~~~~~~~a~~~a~~~ 321 (351)
+.+|+..|+..
T Consensus 458 ----~~~Aa~~a~~l 468 (508)
T PRK10565 458 ----PYDAACAGCVA 468 (508)
T ss_pred ----HHHHHHHHHHH
Confidence 88888877743
No 86
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.64 E-value=0.00046 Score=65.55 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=80.3
Q ss_pred cCCChHHHHHHHHHHcCCCeE-EEeecCCChHHHHHHHHHHHCCCCCC--------Cee----ecCCCCCeEEEEEEecC
Q 018696 59 APGGAPANVAVGISRLGGSSA-FVGKLGDDEFGYMLANILKENNVDTS--------GVR----YDSTARTALAFVTLRAD 125 (351)
Q Consensus 59 ~~GG~~~n~a~~l~~lG~~v~-~v~~vG~D~~g~~i~~~l~~~gid~~--------~v~----~~~~~~t~~~~~~~~~~ 125 (351)
..||.+.-+|..|+.++.... +.+.++.. .+.+.| ..+|-.- .+. ..++...-..+++....
T Consensus 93 r~GGnA~imAn~la~l~~~~Vil~~p~~sk----~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy~~ 167 (444)
T PF04587_consen 93 RMGGNAGIMANRLANLEGCPVILYAPILSK----EQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEYKK 167 (444)
T ss_dssp EEESHHHHHHHHHCCTT-SEEEEE-SS--H----HHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE-T
T ss_pred ccCchHHHHHHHHHhCCCCEEEEecCcCCH----HHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEEcCC
Confidence 599999999999997755544 44435543 233444 2222000 000 00112333444444444
Q ss_pred CC----------ceEEEecC-CcccccCCccccc---hhhhcCccEEEEccccccCc-----hhH----HHHHHHHHHHH
Q 018696 126 GE----------REFLFFRH-PSADMLLCESELD---KNLIKQGSIFHYGSISLIAE-----PCR----STQLAAMNLAK 182 (351)
Q Consensus 126 g~----------~~~~~~~~-~~~~~~~~~~~i~---~~~i~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~a~ 182 (351)
|. ++++...+ .+..... .+.+. .+.....|.+.++|+.++.+ ... +.+.+.++..+
T Consensus 168 G~~~~~~~aPraNRfI~s~D~~N~~l~~-~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~ 246 (444)
T PF04587_consen 168 GEKWGDITAPRANRFIVSSDPYNPRLSI-LEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLK 246 (444)
T ss_dssp TEEETTEE-SS-EEEEEEE-SSGGGTS---HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH
T ss_pred CCeecceecCcCceEEEecCCCCccccc-hHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhcc
Confidence 42 33333322 2222111 12221 12345699999999988663 112 22233333454
Q ss_pred -HcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcC
Q 018696 183 -ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTG 231 (351)
Q Consensus 183 -~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 231 (351)
..++++-+...+. .+.+-.+..+..+++++|.+-+|++|+..+..
T Consensus 247 ~~~~~~iH~E~As~----~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 247 SNPDIPIHLELASF----ADEELRKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp -HTT-EEEEE--------SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred CCCCCceEEEeccc----cCHHHHHHHHHHhhccccccccCHHHHHHHHH
Confidence 5789999998753 35556667777899999999999999998643
No 87
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.55 E-value=0.0055 Score=53.51 Aligned_cols=168 Identities=17% Similarity=0.090 Sum_probs=99.4
Q ss_pred hhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHH---hhhcCcEEEeCHHHH
Q 018696 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMS---IWDQADIIKVSDDEI 226 (351)
Q Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~---~l~~~dvl~~N~~E~ 226 (351)
+.++.+|.+.++.-.-..+.. .++++...+...++++|.. ....+.. .....-||.|+.-|+
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~----~~~~~~~~~~~~p~VlDAD-----------aL~~l~~~~~~~~~~~IlTPH~gE~ 127 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEET----EELLEELLESDKPLVLDAD-----------ALNLLAENPKKRNAPVILTPHPGEF 127 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHH----HHHHHHHHHHCSTEEEECH-----------HHHCHHHCCCCSSSCEEEE-BHHHH
T ss_pred hhhccCCEEEeecCCCCchhh----HHHHHHHHhhcceEEEehH-----------HHHHHHhccccCCCCEEECCCHHHH
Confidence 456788988887543222222 2244445555778999962 1222222 234566899999999
Q ss_pred hhhcCCCC--CChhHHHHHHHhc-CCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCC
Q 018696 227 TFLTGGDD--HNDDNVVLEKLFH-PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQN 303 (351)
Q Consensus 227 ~~l~~~~~--~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~ 303 (351)
..|++... .++..+.++++.+ .++ +||-.|..-.++..+++.+. ....-...-+-|.||++++-+..-++++.+
T Consensus 128 ~rL~~~~~~~~~~~~~~a~~~a~~~~~--~vvLKG~~t~I~~p~~~~~~-n~~gn~~la~gGsGDvLaGii~~llaq~~~ 204 (242)
T PF01256_consen 128 ARLLGKSVEIQEDRIEAAREFAKEYGA--VVVLKGAVTIIASPGGRVYV-NPTGNPGLATGGSGDVLAGIIAGLLAQGYD 204 (242)
T ss_dssp HHHHTTTCHHCCSHHHHHHHHHHHHTS--EEEEESTSSEEEEETSEEEE-E----GGGSSTTHHHHHHHHHHHHHHHTSS
T ss_pred HHHhCCcccchhhHHHHHHHHHhhcCc--EEEEeCCCcEEEecCcceeE-eCCCCCCCCCCCcccHHHHHHHHHHHccCC
Confidence 99999776 3334445555554 343 56666776665544554444 333345667789999999988888899998
Q ss_pred cccchHHHHHHHHHHHHH----HhHHhcccCCCCCCCCHHHHHHHH
Q 018696 304 LIKDENRLREALLFANAC----GALTVTERGAIPALPTKEAALKLL 345 (351)
Q Consensus 304 ~~~~~~~~~~a~~~a~~~----Aa~~i~~~g~~~~~~~~~~v~~~l 345 (351)
+.+++..|+.. +-...+..+. + ....+|.+.|
T Consensus 205 -------~~~Aa~~av~lHg~Ag~~~~~~~~~--~-~~a~dli~~i 240 (242)
T PF01256_consen 205 -------PFEAACLAVYLHGRAGDLAAEKYGR--G-MLASDLIDNI 240 (242)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCTTCSS--C---HHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhCCC--c-CcHHHHHHhc
Confidence 88988888743 3333333443 2 3566665544
No 88
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.47 E-value=0.0088 Score=51.56 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=88.6
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhh--cCcEEEeCHHHHhhh
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDEITFL 229 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~N~~E~~~l 229 (351)
+.++=++-++.+ +....+.+....+.+++.+.|+++||..-.. ..-..+...+++. +.+++..|..|...|
T Consensus 55 ia~AL~INIGTL---~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA----t~~R~~~~~~LL~~~~~~~IrGN~sEI~~L 127 (265)
T COG2145 55 IADALLINIGTL---SAERIQAMRAAIKAANESGKPVVLDPVGVGA----TKFRTKFALELLAEVKPAAIRGNASEIAAL 127 (265)
T ss_pred hccceEEeeccC---ChHHHHHHHHHHHHHHhcCCCEEecCccCCc----hHHHHHHHHHHHHhcCCcEEeccHHHHHHH
Confidence 444444444433 4455678888999999999999999953221 1122344555555 479999999999999
Q ss_pred cCCCC----------CChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHH
Q 018696 230 TGGDD----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 299 (351)
Q Consensus 230 ~~~~~----------~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~ 299 (351)
.+... .++..++++.+.+. .+.+++-.|+..+ +.++++.+.+.--..-.-.-||+|+...|...+.++
T Consensus 128 ag~~~~~kGVDa~~~~~~~~~~a~~~A~~-~~~vvvvTG~vD~-Isdg~~~~~i~nG~pll~~ItGtGCllgav~aaF~a 205 (265)
T COG2145 128 AGEAGGGKGVDAGDGAADAIEAAKKAAQK-YGTVVVVTGEVDY-ISDGTRVVVIHNGSPLLGKITGTGCLLGAVVAAFLA 205 (265)
T ss_pred hcccccccccccccchhhHHHHHHHHHHH-hCcEEEEECCeeE-EEcCCeEEEEECCCcHHhhhhccccHHHHHHHHHHh
Confidence 86432 11222334444332 2246666677665 334555555554444455669999888777766666
Q ss_pred hcCC
Q 018696 300 ADQN 303 (351)
Q Consensus 300 ~g~~ 303 (351)
...+
T Consensus 206 v~~d 209 (265)
T COG2145 206 VEKD 209 (265)
T ss_pred cCCC
Confidence 6665
No 89
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=97.23 E-value=0.0035 Score=59.26 Aligned_cols=163 Identities=12% Similarity=0.139 Sum_probs=93.1
Q ss_pred ccccCCChHHHHHHHHHHcCC-CeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecC--CCCCeEEEEEEecCCC-----
Q 018696 56 FKKAPGGAPANVAVGISRLGG-SSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDS--TARTALAFVTLRADGE----- 127 (351)
Q Consensus 56 ~~~~~GG~~~n~a~~l~~lG~-~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~--~~~t~~~~~~~~~~g~----- 127 (351)
...+.||.+..+|..++.+|. +|.+.+.+..... ...+.+.+|- +...+ ..+.-..+++..+.|.
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~~----~~L~~d~~i~---~p~~e~~~~~d~IHlIlEy~~G~~~~~~ 173 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKLQ----AELFLDGPIV---VPTFENLIEEDEIHLILEYPRGESWGDF 173 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcHHH----HHhCCCCCee---ecccccCCCCCccEEEEEcCCCCEecce
Confidence 468999999999999999999 7777777555422 2222221111 11111 1123333333333333
Q ss_pred -----ceEEEecCCcccccCCccccchhhhcC-ccEEEEccccccCchh--HHHHHHHHHHHHH------cCCeEEEcCC
Q 018696 128 -----REFLFFRHPSADMLLCESELDKNLIKQ-GSIFHYGSISLIAEPC--RSTQLAAMNLAKE------SGSILSYDPN 193 (351)
Q Consensus 128 -----~~~~~~~~~~~~~~~~~~~i~~~~i~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~------~~~~v~~d~~ 193 (351)
++++...++ .+.....+.+..+..+. .|.+.++|+.++.+.. .....+.++.+++ ..+++-+...
T Consensus 174 ~aPraNRfI~~~d~-~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~A 252 (445)
T cd01938 174 VAPRANRFIFHDDD-NNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELA 252 (445)
T ss_pred EcCCCCeEEEecCC-cchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEec
Confidence 344433222 12122222222333444 8999999998876532 2333333333332 2367777776
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhc
Q 018696 194 LRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 230 (351)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 230 (351)
+. .+.+-....+..+++++|-+=+|++|+..+.
T Consensus 253 s~----~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 253 ST----VDEELREEILHEVVPYVDSLGLNEQELANLL 285 (445)
T ss_pred cc----ccHHHHHHHHHHhcccccccccCHHHHHHHH
Confidence 43 3455666777789999999999999999875
No 90
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.015 Score=49.91 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=100.3
Q ss_pred hhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHH-HHHHhhhcCcEEEeCHHHHh
Q 018696 149 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAARE-GIMSIWDQADIIKVSDDEIT 227 (351)
Q Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~-~~~~~l~~~dvl~~N~~E~~ 227 (351)
+..+...++++++.-.--++.....+..+++.++.+++|+++|... +|--. +..+ .+.. . ..-||.||..|+.
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDG---L~Lv~-q~~e~l~~~-~-~~viLTPNvvEFk 169 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADG---LWLVE-QLPERLIGG-Y-PKVILTPNVVEFK 169 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCc---eEehh-hchhhhhcc-C-ceeeeCCcHHHHH
Confidence 4467788888887655456666788889999999999999999742 12111 1111 1111 1 2357889999999
Q ss_pred hhcCCCC-CChhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHH--Hh--cC
Q 018696 228 FLTGGDD-HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCL--AA--DQ 302 (351)
Q Consensus 228 ~l~~~~~-~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l--~~--g~ 302 (351)
.|++... ..+....+..|...-....|+-.|+...++..+++....+. +-....--|=||..++.+...+ ++ ..
T Consensus 170 RLcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~~~s~-eGs~kRcGGQGDiLaGsla~fl~w~k~~~~ 248 (306)
T KOG3974|consen 170 RLCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEVRVCST-EGSLKRCGGQGDILAGSLATFLSWAKLLSG 248 (306)
T ss_pred HHHHHhhccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCeeEEccC-CCCccccCCCcchhhhHHHHHHHHHHhccC
Confidence 9998732 11222233444433345678888888876665555554443 3344555677999987665443 22 22
Q ss_pred CcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 303 NLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 303 ~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
+ ..+++..|..++++.+..
T Consensus 249 e-------~~~~~~~a~~a~s~~vr~ 267 (306)
T KOG3974|consen 249 E-------QDSAAFLAAVAGSIMVRR 267 (306)
T ss_pred C-------ccchhhhhhhhhHHHHHH
Confidence 2 335556666555555444
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.1 Score=46.49 Aligned_cols=172 Identities=15% Similarity=0.059 Sum_probs=90.4
Q ss_pred hhcCccEEEEccccccCchhHHHHHHHHHHHHHcC-CeEEEcCCCCCCCCCCHHHHHHHHHHhh-hcCcEEEeCHHHHhh
Q 018696 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG-SILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVSDDEITF 228 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~~~~~~~~~~~~~~~~~~~l-~~~dvl~~N~~E~~~ 228 (351)
..+.+|.+.++.-.-..+...+...++ -+.. .++++|...-. .......+. ..--||.|+.-|++.
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~----l~~~~~p~ViDADaL~--------~la~~~~~~~~~~~VlTPH~gEf~r 165 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKEL----LSSDLKPLVLDADALN--------LLAELPDLLDERKVVLTPHPGEFAR 165 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHH----HhccCCCEEEeCcHHH--------HHHhCcccccCCcEEECCCHHHHHH
Confidence 356788888774333333333333333 3333 79999974210 000111111 122688899999999
Q ss_pred hcCCCCCC---hhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcc
Q 018696 229 LTGGDDHN---DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLI 305 (351)
Q Consensus 229 l~~~~~~~---~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~ 305 (351)
|++....+ +..+.++.+.+.. ..+||-.|..-++.. .+...++...--.-.-+=|.||++++-+.+-|+++ +
T Consensus 166 L~g~~~~~~~~~r~~~a~~~a~~~-~~vvVLKG~~tvI~~-~~g~~~~n~~G~~~ma~GGtGDvLaGii~alLAq~-~-- 240 (284)
T COG0063 166 LLGTEVDEIEVDRLEAARELAAKY-GAVVVLKGAVTVIAD-PDGEVFVNPTGNPGMATGGTGDVLAGIIGALLAQG-P-- 240 (284)
T ss_pred hcCCcccccccchHHHHHHHHHHc-CCEEEEeCCCCEEEc-CCCcEEEcCCCCHHhccCcchHHHHHHHHHHHhCC-C--
Confidence 99843222 1223444544432 336677777666554 33233333332234445688999887666666777 4
Q ss_pred cchHHHHHHHHHHHHHHh----HHhcccCCCCCCCCHHHHHHHHh
Q 018696 306 KDENRLREALLFANACGA----LTVTERGAIPALPTKEAALKLLH 346 (351)
Q Consensus 306 ~~~~~~~~a~~~a~~~Aa----~~i~~~g~~~~~~~~~~v~~~l~ 346 (351)
.++.+|+..|+..=+ ..-...+ -....|+-+.+.
T Consensus 241 ---~~~~~Aa~~g~~~h~~ag~la~~~~g----~~~a~Dl~~~ip 278 (284)
T COG0063 241 ---ADPLEAAAAGAWLHGRAGELAAKKHG----GLTATDLIEAIP 278 (284)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHhhccC----CCCHHHHHHHHH
Confidence 136666666653322 3333333 235666655554
No 92
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=93.24 E-value=0.24 Score=44.65 Aligned_cols=161 Identities=12% Similarity=0.182 Sum_probs=87.9
Q ss_pred CccccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCC--CCCCCeeecCCCCCeEEEEEEecCCCceEEE
Q 018696 55 AFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENN--VDTSGVRYDSTARTALAFVTLRADGEREFLF 132 (351)
Q Consensus 55 ~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~g--id~~~v~~~~~~~t~~~~~~~~~~g~~~~~~ 132 (351)
+...+.||.+.-+|.-...-| .++++|..|.-.....+-...+-.| |--+.+ .+++....|+.- .-
T Consensus 137 R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~~~~~I~~Ddi----------HlILEYK~Gd~~-G~ 204 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDI----------HLILEYKAGDKW-GP 204 (478)
T ss_pred hhhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhcccCcCcCCce----------EEEEEeccCCcc-cc
Confidence 567899999888888888777 8889999997644433333333332 111111 222222223210 00
Q ss_pred ecCCcccccCCc-----------ccc-chhhhcCccEEEEccccccCchhHHHHHHHHHHHHH------cCCeEEEcCCC
Q 018696 133 FRHPSADMLLCE-----------SEL-DKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE------SGSILSYDPNL 194 (351)
Q Consensus 133 ~~~~~~~~~~~~-----------~~i-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~------~~~~v~~d~~~ 194 (351)
|-.|.+++.+.. +++ +.-..-+.|.++++|+.+++-...+...+-+...+. .|+++-+...+
T Consensus 205 ~VAP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS 284 (478)
T KOG4184|consen 205 YVAPRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELAS 284 (478)
T ss_pred cccccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhH
Confidence 111222222211 111 111223568899999877665555443333333332 35566555543
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcC
Q 018696 195 RLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTG 231 (351)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 231 (351)
. .+.+-..+.+-.+++++|-|=+|++|+..|..
T Consensus 285 ~----~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 285 M----TNRELMSSIVHQVLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred H----HHHHHHHHHHHHhhhhccccCCCHHHHHHHHH
Confidence 2 22333445566789999999999999988753
No 93
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=90.29 E-value=15 Score=34.03 Aligned_cols=77 Identities=8% Similarity=0.005 Sum_probs=51.0
Q ss_pred hhcCccEEEEccccccCch----h-----HHHHHHHHHHHHH-cCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEE
Q 018696 151 LIKQGSIFHYGSISLIAEP----C-----RSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 220 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~ 220 (351)
.....|...++|+..+.+. + .+...+-++..+. .++++=+...+.. +..-.+..+..++++++-+=
T Consensus 222 i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~----d~~irk~i~~~il~~v~SvG 297 (466)
T COG4809 222 IAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQ----DRKIRKEILTNILSIVYSVG 297 (466)
T ss_pred HhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccc----cHHHHHHHHHHHHhhhhhcC
Confidence 4456788888888753321 1 2233344455555 6778888776532 44455666777999999999
Q ss_pred eCHHHHhhhcC
Q 018696 221 VSDDEITFLTG 231 (351)
Q Consensus 221 ~N~~E~~~l~~ 231 (351)
+|+.|...+..
T Consensus 298 ldE~ElA~vl~ 308 (466)
T COG4809 298 LDEVELANVLN 308 (466)
T ss_pred CCHHHHHHHHH
Confidence 99999887654
No 94
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=77.34 E-value=38 Score=28.86 Aligned_cols=95 Identities=18% Similarity=0.042 Sum_probs=62.1
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcC
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTG 231 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 231 (351)
-..+||+.+.+. .+.+++...++.+++.|..+.+|.-.. .+++...+++.+ -.+|++.+-..-=....|
T Consensus 78 ~aGAd~~tV~g~-----A~~~TI~~~i~~A~~~~~~v~iDl~~~----~~~~~~~~~l~~--~gvd~~~~H~g~D~q~~G 146 (217)
T COG0269 78 EAGADWVTVLGA-----ADDATIKKAIKVAKEYGKEVQIDLIGV----WDPEQRAKWLKE--LGVDQVILHRGRDAQAAG 146 (217)
T ss_pred HcCCCEEEEEec-----CCHHHHHHHHHHHHHcCCeEEEEeecC----CCHHHHHHHHHH--hCCCEEEEEecccHhhcC
Confidence 358899866554 256788999999999999999998432 245566666665 356666654332233366
Q ss_pred CCCCChhHHHHHHHhcCCCeEEEEeeC
Q 018696 232 GDDHNDDNVVLEKLFHPNLKLLIVTEG 258 (351)
Q Consensus 232 ~~~~~~~~~~~~~l~~~g~~~vvvt~G 258 (351)
.....+....++++.+.|.+ +-|+-|
T Consensus 147 ~~~~~~~l~~ik~~~~~g~~-vAVaGG 172 (217)
T COG0269 147 KSWGEDDLEKIKKLSDLGAK-VAVAGG 172 (217)
T ss_pred CCccHHHHHHHHHhhccCce-EEEecC
Confidence 66644444467788888854 566654
No 95
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=72.65 E-value=39 Score=28.84 Aligned_cols=73 Identities=7% Similarity=-0.025 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEe-----CHHHHhhhcCCCCCChhHHHHHHH
Q 018696 171 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----SDDEITFLTGGDDHNDDNVVLEKL 245 (351)
Q Consensus 171 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~-----N~~E~~~l~~~~~~~~~~~~~~~l 245 (351)
.+.+.++++.+++.|+.+.+|-+...+ .+.+.++++++|.+.+ +.+..+.++|... +....-++.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~--------~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~-~~il~nl~~l 123 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAP--------ASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNL-PRVLENLRLL 123 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCH-HHHHHHHHHH
Confidence 456788999999999999999864322 2345666777877665 4556667888543 3444456777
Q ss_pred hcCCCeE
Q 018696 246 FHPNLKL 252 (351)
Q Consensus 246 ~~~g~~~ 252 (351)
.+.|...
T Consensus 124 ~~~g~~v 130 (213)
T PRK10076 124 VSEGVNV 130 (213)
T ss_pred HhCCCcE
Confidence 7777653
No 96
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=65.07 E-value=35 Score=31.35 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCccc
Q 018696 60 PGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSAD 139 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~ 139 (351)
.||.|.|+.-.+...|.+-.=+-++..| .+.|+...++.. +++-.. .| .-....+.+.+. ...
T Consensus 19 vGg~G~n~v~~m~~~~~~gve~ia~nTD------~q~L~~~~a~~k-i~iG~~-~t----~GlGaGa~P~vG-----~~a 81 (338)
T COG0206 19 VGGAGGNAVNRMIEEGVEGVEFIAINTD------AQALKSSKADRK-ILIGES-IT----RGLGAGANPEVG-----RAA 81 (338)
T ss_pred eCCcchHHHHHHHHhhhCceEEEEeccC------HHHHhccccCeE-EEeccc-ee----eccCCCCCcHHH-----HHH
Confidence 7999999999999999984444447777 456665444322 211111 00 001111111111 000
Q ss_pred ccCCccccchhhhcCccEE-EEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCC--CCHHHHHHHHHHhhhcC
Q 018696 140 MLLCESELDKNLIKQGSIF-HYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLW--PSEEAAREGIMSIWDQA 216 (351)
Q Consensus 140 ~~~~~~~i~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~--~~~~~~~~~~~~~l~~~ 216 (351)
...+.+.+ .+.+++++.+ ...++-- ..-.....-+.+.++++|.+++--...+..+. .........++.+-+++
T Consensus 82 Aee~~~~I-~~~l~g~dmvfitaG~GG--GTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~ 158 (338)
T COG0206 82 AEESIEEI-EEALKGADMVFVTAGMGG--GTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVV 158 (338)
T ss_pred HHHHHHHH-HHHhccCCeEEEEeeecC--CccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhC
Confidence 11122222 4678899944 3343322 11122333566777778876443322211111 12335566788888888
Q ss_pred c--EEEeCHHHHhhh
Q 018696 217 D--IIKVSDDEITFL 229 (351)
Q Consensus 217 d--vl~~N~~E~~~l 229 (351)
| ++++|..-+...
T Consensus 159 DtlIvi~Ndkll~~~ 173 (338)
T COG0206 159 DTLIVIPNDKLLKGK 173 (338)
T ss_pred CcEEEEecHHHHhcc
Confidence 8 455776654443
No 97
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=62.40 E-value=20 Score=24.92 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCeEEEeecCC------ChHHHHHHHHHHHCCCCCC
Q 018696 64 PANVAVGISRLGGSSAFVGKLGD------DEFGYMLANILKENNVDTS 105 (351)
Q Consensus 64 ~~n~a~~l~~lG~~v~~v~~vG~------D~~g~~i~~~l~~~gid~~ 105 (351)
|.=.|..|+++|.+|+++..-.. ....+.+.+.|++.||+..
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 77789999999999999986543 2357778899999998643
No 98
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=58.30 E-value=1.3e+02 Score=26.50 Aligned_cols=88 Identities=23% Similarity=0.225 Sum_probs=57.6
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeC-----HHHHhh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVS-----DDEITF 228 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N-----~~E~~~ 228 (351)
..+.+.+++-- .....+.+.++++.+++.|+++.+|-+.... ...+.++++..|.+.++ .+..+.
T Consensus 83 ~~~gvt~SGGE--P~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~--------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGGE--PTLQAEFALDLLRAAKERGLHVALDTNGFLP--------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECCc--chhhHHHHHHHHHHHHHCCCcEEEEcCCCCC--------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 45666555421 2245678889999999999999999865432 22335566677777654 344777
Q ss_pred hcCCCCCChhHHHHHHHhcCCCeE
Q 018696 229 LTGGDDHNDDNVVLEKLFHPNLKL 252 (351)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~g~~~ 252 (351)
+++... +...+.++.+.+.|+..
T Consensus 153 ~tg~~~-~~vl~~~~~l~~~g~~v 175 (260)
T COG1180 153 LTGADN-EPVLENLELLADLGVHV 175 (260)
T ss_pred HhCCCc-HHHHHHHHHHHcCCCeE
Confidence 887776 44445667777777653
No 99
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=52.00 E-value=16 Score=22.77 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=24.1
Q ss_pred EeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEE
Q 018696 220 KVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLI 254 (351)
Q Consensus 220 ~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vv 254 (351)
+++.+|+..|+|...... .++.|.+.|...++
T Consensus 2 fLT~~El~elTG~k~~~~---Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSK---QIRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCCCHHH---HHHHHHHCCCeeEE
Confidence 578999999999775433 56788888887544
No 100
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=50.74 E-value=1.7e+02 Score=26.96 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=51.3
Q ss_pred CCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCc
Q 018696 76 GSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQG 155 (351)
Q Consensus 76 ~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ 155 (351)
.+|.++|.-|. .|+.+.+.|.+++....-+..... ...-|+....+. +........-.+...+++.
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~AS---------~rSaG~~~~~f~---~~~~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLAS---------ARSAGKKYIEFG---GKSIGVPEDAADEFVFSDV 67 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEec---------ccccCCcccccc---CccccCccccccccccccC
Confidence 46778888774 899999999998766553322211 112233322110 1110011100122334577
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCC
Q 018696 156 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 194 (351)
|++.++. ..+...++..++.+.| .+++|-.+
T Consensus 68 Divf~~a-------g~~~s~~~~p~~~~~G-~~VIdnsS 98 (334)
T COG0136 68 DIVFFAA-------GGSVSKEVEPKAAEAG-CVVIDNSS 98 (334)
T ss_pred CEEEEeC-------chHHHHHHHHHHHHcC-CEEEeCCc
Confidence 8776553 2244467777788888 45666543
No 101
>PRK09330 cell division protein FtsZ; Validated
Probab=50.53 E-value=1.3e+02 Score=28.28 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=67.8
Q ss_pred ccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCc
Q 018696 58 KAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPS 137 (351)
Q Consensus 58 ~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 137 (351)
.-.||.|.|+.-.+.+.|.+-.=+-++-.| .+.|.....+.. ++ .....|. -....+++... .
T Consensus 19 iGvGG~G~Nav~~m~~~~~~~v~fia~NTD------~q~L~~~~a~~k-i~-lG~~~t~----GlGaG~~pe~G-----~ 81 (384)
T PRK09330 19 IGVGGGGGNAVNRMIEEGIQGVEFIAANTD------AQALLKSKAPVK-IQ-LGEKLTR----GLGAGANPEVG-----R 81 (384)
T ss_pred EEECCcHHHHHHHHHHcCCCCceEEEEeCc------HHHHhcCCCCeE-EE-cCCcccc----cCCCCCCHHHH-----H
Confidence 348999999999999998543333345666 345555333322 11 1110000 00011111110 0
Q ss_pred ccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCC--CCHHHHHHHHHHhhhc
Q 018696 138 ADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLW--PSEEAAREGIMSIWDQ 215 (351)
Q Consensus 138 ~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~--~~~~~~~~~~~~~l~~ 215 (351)
....-..+.+ .+.++++|.+.+..- +....-.....-+.+.+++++++++-=...+..+. .........+.++.++
T Consensus 82 ~aaee~~e~I-~~~l~~~D~vfI~AG-mGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~ 159 (384)
T PRK09330 82 KAAEESREEI-REALEGADMVFITAG-MGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKH 159 (384)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEEec-CCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHH
Confidence 0000111222 356789998754321 11111122333456777888866332221111111 1223566778888899
Q ss_pred CcEEE
Q 018696 216 ADIIK 220 (351)
Q Consensus 216 ~dvl~ 220 (351)
+|.++
T Consensus 160 ~D~vI 164 (384)
T PRK09330 160 VDTLI 164 (384)
T ss_pred CCEEE
Confidence 99766
No 102
>PRK15452 putative protease; Provisional
Probab=49.50 E-value=1e+02 Score=29.62 Aligned_cols=83 Identities=11% Similarity=0.002 Sum_probs=47.5
Q ss_pred ccccchhhhcCccEEEEcccccc-----CchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhh-cCc
Q 018696 144 ESELDKNLIKQGSIFHYGSISLI-----AEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD-QAD 217 (351)
Q Consensus 144 ~~~i~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~-~~d 217 (351)
.+++....-.++|.||+++-.+- .+...+.+.++++.++++|+++.+-.+.... ...-+.+.+.+..+.. .+|
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~-e~el~~~~~~l~~l~~~gvD 91 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPH-NAKLKTFIRDLEPVIAMKPD 91 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCC-HHHHHHHHHHHHHHHhCCCC
Confidence 34444455678999999653221 1234467888999999999999887653322 1112233444444433 367
Q ss_pred EEEeC-HHHHh
Q 018696 218 IIKVS-DDEIT 227 (351)
Q Consensus 218 vl~~N-~~E~~ 227 (351)
-+++. .-.+.
T Consensus 92 gvIV~d~G~l~ 102 (443)
T PRK15452 92 ALIMSDPGLIM 102 (443)
T ss_pred EEEEcCHHHHH
Confidence 55544 44333
No 103
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=49.17 E-value=26 Score=30.28 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=32.9
Q ss_pred ceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEe
Q 018696 29 RLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVG 82 (351)
Q Consensus 29 ~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~ 82 (351)
|+|++.+..+..-+=.+.... ..+.|+.|...|..|.+.|.+|.++.
T Consensus 1 ~~vliT~G~T~e~iD~VR~it-------N~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGIT-------NHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred CEEEEcCCCcccccCCceeec-------CccchHHHHHHHHHHHhCCCEEEEEE
Confidence 357777766655443322111 25678899999999999999999886
No 104
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=45.66 E-value=1.7e+02 Score=27.08 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=67.4
Q ss_pred ccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCc
Q 018696 58 KAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPS 137 (351)
Q Consensus 58 ~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 137 (351)
.-.||.|.|+.-.+.+.|.+-.-+-++-.| .+.|.....+.. ++ .....|. -....++... +
T Consensus 23 iGvGg~G~n~v~~l~~~~~~~~~~iainTD------~~~L~~~~a~~k-i~-iG~~~t~----G~GaG~~~~~------G 84 (349)
T TIGR00065 23 IGVGGGGNNTVNRMLEEGVEGVEFIAINTD------AQHLKTTKADKK-IL-IGKKLTR----GLGAGGNPEI------G 84 (349)
T ss_pred EEeCCcHHHHHHHHHHcCCCceEEEEEECC------HHHHhcCCCCeE-EE-cCCCCCC----CCCCCCCHHH------H
Confidence 348999999999999998665444456677 245555333221 11 1110010 0001111110 0
Q ss_pred cc-ccCCccccchhhhcCccEEEE-ccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCC--CCCCHHHHHHHHHHhh
Q 018696 138 AD-MLLCESELDKNLIKQGSIFHY-GSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLP--LWPSEEAAREGIMSIW 213 (351)
Q Consensus 138 ~~-~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~--~~~~~~~~~~~~~~~l 213 (351)
.. .....+.+ .+.++++|.+.+ .++--... .....-+.+.+++++++++.=...+.. -..........+.++.
T Consensus 85 ~~~aee~~d~I-r~~le~~D~vfI~aglGGGTG--SG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~ 161 (349)
T TIGR00065 85 RKAAEESRDEI-RKLLEGADMVFITAGMGGGTG--TGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLK 161 (349)
T ss_pred HHHHHHHHHHH-HHHHhCCCEEEEEEeccCccc--hhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHH
Confidence 00 00111222 356788998754 33211111 122334556666776553322111111 1113345667788888
Q ss_pred hcCcEEEe
Q 018696 214 DQADIIKV 221 (351)
Q Consensus 214 ~~~dvl~~ 221 (351)
+++|.+++
T Consensus 162 ~~~D~viv 169 (349)
T TIGR00065 162 QAVDTLIV 169 (349)
T ss_pred HhCCEEEE
Confidence 89997663
No 105
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=45.10 E-value=2.5e+02 Score=25.88 Aligned_cols=190 Identities=16% Similarity=0.106 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCCeEEEeecCCC-hHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCc
Q 018696 66 NVAVGISRLGGSSAFVGKLGDD-EFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCE 144 (351)
Q Consensus 66 n~a~~l~~lG~~v~~v~~vG~D-~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 144 (351)
-+|..++..|.+|.-.|.-+-. ..|. .+.|+..||++.. .++
T Consensus 96 ~aA~v~A~~Gv~VaKHGnrs~sSksGs--aDvleaLGv~l~~---~~e-------------------------------- 138 (338)
T COG0547 96 AAAIVAAAAGVPVAKHGNRSVSSKSGS--ADVLEALGVNLEL---SPE-------------------------------- 138 (338)
T ss_pred HHHHHHHhCCCcEEeECCCCCCCCCcH--HHHHHHcCCCCCC---CHH--------------------------------
Confidence 3678889999999999966632 3444 6788888887652 111
Q ss_pred cccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHH
Q 018696 145 SELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDD 224 (351)
Q Consensus 145 ~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~ 224 (351)
+. .+.+++..+.++ ..+........+....++.|.+.+|+.--. ++ -.+-...-++-+...
T Consensus 139 -~~-~~~l~~~g~~Fl-----fAp~~hp~~k~v~~vR~~LG~RTifN~LGP--L~----------NPa~~~~qliGV~~p 199 (338)
T COG0547 139 -QA-ARALEETGIGFL-----FAPAYHPAMKHVAPVRKELGVRTIFNLLGP--LL----------NPARAKLQLIGVYHP 199 (338)
T ss_pred -HH-HHHHHhcCeEEE-----EccccCHHHHHHHHHHHHcCCCchHHhhcc--cc----------CCCCCCceEEEEeCH
Confidence 10 111111111110 011122344456666778899988875211 00 000011222333333
Q ss_pred HHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCCcce-----------EEEecCce--eeecCccc-----ccccCCCC
Q 018696 225 EITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGC-----------RYYTKEFK--GRVPGVKT-----KAVDTTGA 286 (351)
Q Consensus 225 E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~-----------~~~~~~~~--~~v~~~~~-----~~vd~tGa 286 (351)
++. ..+++.+..+|.+..+|-+|.+|. +...++++ +.+.+... +..+--|.
T Consensus 200 ~~~-----------~~~A~~l~~LG~~ralvV~G~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~ 268 (338)
T COG0547 200 ELV-----------ELLAEALRLLGVERALVVHGLEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGG 268 (338)
T ss_pred HHH-----------HHHHHHHHHhCcceEEEEECCCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCC
Confidence 322 235677788898888888887664 22233332 33333322 22333444
Q ss_pred chHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcc
Q 018696 287 GDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTE 328 (351)
Q Consensus 287 GD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~ 328 (351)
.=.-.+.++-..++|.. ....-.-..|+++++.+..
T Consensus 269 ~~~ena~~~~~vL~G~~------~~~~d~v~~Naa~~L~~~g 304 (338)
T COG0547 269 DPEENAEILRAVLAGEE------GPARDAVALNAAAALYAAG 304 (338)
T ss_pred CHHHHHHHHHHHHCCCC------cchHHHHHHHHHHHHHHcC
Confidence 33446678888888854 1343445556666666644
No 106
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=44.13 E-value=66 Score=24.37 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=28.1
Q ss_pred cchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCC
Q 018696 147 LDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL 196 (351)
Q Consensus 147 i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~ 196 (351)
.+.+.+.++|++.++. +.+...++...+.+.|+ .++|.+...
T Consensus 59 ~~~~~~~~~Dvvf~a~-------~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 59 ADPEELSDVDVVFLAL-------PHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp TSGHHHTTESEEEE-S-------CHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred cchhHhhcCCEEEecC-------chhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 3355678999986653 34556677777788887 678876543
No 107
>PHA00438 hypothetical protein
Probab=43.37 E-value=21 Score=24.75 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=15.4
Q ss_pred cCCCCchHHHHHHHHHHH
Q 018696 282 DTTGAGDSFVSGILNCLA 299 (351)
Q Consensus 282 d~tGaGD~f~ag~~~~l~ 299 (351)
-..|..+.|++||+.|+-
T Consensus 45 R~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 45 RQAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HHcCCcHHHHHHHHHHHH
Confidence 347889999999999984
No 108
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.28 E-value=40 Score=25.92 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=36.4
Q ss_pred cccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 57 KKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 57 ~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
.....|.|.-++..|...|.++.+++.+|... .+.|++.||++
T Consensus 47 ~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a-----~~~l~~~GIkv 89 (121)
T COG1433 47 ASAEKGAGIRIAELLVDEGVDVVIASNIGPNA-----YNALKAAGIKV 89 (121)
T ss_pred ccccCcchHHHHHHHHHcCCCEEEECccCHHH-----HHHHHHcCcEE
Confidence 45678889999999999999999999999753 45889999974
No 109
>PRK05866 short chain dehydrogenase; Provisional
Probab=42.01 E-value=1.2e+02 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHHcCCCeEEEee
Q 018696 60 PGGAPANVAVGISRLGGSSAFVGK 83 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~~ 83 (351)
.||-|..+|..|++.|.+|.+++.
T Consensus 49 sggIG~~la~~La~~G~~Vi~~~R 72 (293)
T PRK05866 49 SSGIGEAAAEQFARRGATVVAVAR 72 (293)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEEC
Confidence 478899999999999999887764
No 110
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=41.78 E-value=2.3e+02 Score=26.25 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=49.8
Q ss_pred hcCccEEEEccccc-----cCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhh-cCcEEEeCHHH
Q 018696 152 IKQGSIFHYGSISL-----IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD-QADIIKVSDDE 225 (351)
Q Consensus 152 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dvl~~N~~E 225 (351)
-..+|.+|++.--+ ..+...+.+.+.++.++++|+++.+-.+..... ...+.+.+.+..+.. .+|-++++.--
T Consensus 24 ~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~-~~~~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 24 AAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHN-DELETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred HcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEecccccc-chhhHHHHHHHHHHHcCCCEEEEcCHH
Confidence 35689998875411 123456678999999999999877766543321 122334555555554 88888888765
Q ss_pred HhhhcC
Q 018696 226 ITFLTG 231 (351)
Q Consensus 226 ~~~l~~ 231 (351)
+-.+..
T Consensus 103 ~i~l~~ 108 (347)
T COG0826 103 LIMLAR 108 (347)
T ss_pred HHHHHH
Confidence 554443
No 111
>PRK13018 cell division protein FtsZ; Provisional
Probab=39.54 E-value=2e+02 Score=26.97 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=66.9
Q ss_pred ccCCChHHHHHHHHHHcCCC-eEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCC
Q 018696 58 KAPGGAPANVAVGISRLGGS-SAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHP 136 (351)
Q Consensus 58 ~~~GG~~~n~a~~l~~lG~~-v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 136 (351)
.-.||.|.|+.-.+.+.|.+ +.++ ++-.|. +.|..-..+.. ++ .....|. -....+++... .
T Consensus 34 iGvGGaG~N~v~~m~~~~~~~v~~i-aiNTD~------q~L~~~~a~~k-i~-iG~~~t~----G~GaG~dp~~G----~ 96 (378)
T PRK13018 34 VGCGGAGNNTINRLYEIGIEGAETI-AINTDA------QHLAMIKADKK-IL-IGKSLTR----GLGAGGDPEVG----R 96 (378)
T ss_pred EEeCCcHHHHHHHHHHcCCCCceEE-EEECCH------HHHhcCCCCcE-Ee-cCCccCC----CCCCCCChHHH----H
Confidence 34899999999999999866 4444 466773 45554333221 11 1110000 00011111110 0
Q ss_pred cccccCCccccchhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCC--CCHHHHHHHHHHhhh
Q 018696 137 SADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLW--PSEEAAREGIMSIWD 214 (351)
Q Consensus 137 ~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~--~~~~~~~~~~~~~l~ 214 (351)
.+ .....+.+ .+.++++|.+.+..- +....-......+++.+++.+..++--...+..+. .....+...+..+.+
T Consensus 97 ~a-aee~~d~I-~~~le~~D~vfI~aG-LGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e 173 (378)
T PRK13018 97 KA-AEESRDEI-KEVLKGADLVFVTAG-MGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLRE 173 (378)
T ss_pred HH-HHHHHHHH-HHHhcCCCEEEEEee-ccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHH
Confidence 00 00112222 356788998754321 11112223334566677777755322111110100 011234567888888
Q ss_pred cCcEEEe
Q 018696 215 QADIIKV 221 (351)
Q Consensus 215 ~~dvl~~ 221 (351)
++|.+++
T Consensus 174 ~~D~viv 180 (378)
T PRK13018 174 AADTVIV 180 (378)
T ss_pred hCCEEEE
Confidence 9996663
No 112
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=39.16 E-value=43 Score=28.87 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.9
Q ss_pred ccCCChHHHHHHHHHHcCCCeEEEe
Q 018696 58 KAPGGAPANVAVGISRLGGSSAFVG 82 (351)
Q Consensus 58 ~~~GG~~~n~a~~l~~lG~~v~~v~ 82 (351)
.+.||.|.-+|..|++.|.+|.+++
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEc
Confidence 5689999999999999999999885
No 113
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.62 E-value=2.2e+02 Score=23.41 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCC
Q 018696 171 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 250 (351)
Q Consensus 171 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~ 250 (351)
.+....+++.+.+++.++++=-+... ..+...+.+.+-++...+.-.+ |--..++...+++.+.+.++
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~----v~~~~~~~l~~~yP~l~i~g~~--------g~f~~~~~~~i~~~I~~s~~ 101 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPD----VLQQLKVKLIKEYPKLKIVGAF--------GPLEPEERKAALAKIARSGA 101 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHH----HHHHHHHHHHHHCCCCEEEEEC--------CCCChHHHHHHHHHHHHcCC
Confidence 35566677777777766666532110 1123344444444555544331 11111222334556666666
Q ss_pred eEEEEeeCC
Q 018696 251 KLLIVTEGS 259 (351)
Q Consensus 251 ~~vvvt~G~ 259 (351)
..++|-+|.
T Consensus 102 dil~VglG~ 110 (177)
T TIGR00696 102 GIVFVGLGC 110 (177)
T ss_pred CEEEEEcCC
Confidence 666666654
No 114
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.28 E-value=2.5e+02 Score=26.90 Aligned_cols=42 Identities=24% Similarity=0.113 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHH
Q 018696 174 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDD 224 (351)
Q Consensus 174 ~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~ 224 (351)
+.++.+.|+++|+++++|-....++. ...+-..+||++-+..
T Consensus 166 i~~I~~iA~~~gi~livD~T~~tP~~---------~~pl~~GADIvv~S~T 207 (432)
T PRK06702 166 FKEFSDAAKELEVPFIVDNTLATPYL---------CQAFEHGANIIVHSTT 207 (432)
T ss_pred HHHHHHHHHHcCCEEEEECCCCchhh---------CChhhcCCCEEEEccc
Confidence 56788889999999999986532211 1122235787776554
No 115
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=38.11 E-value=51 Score=29.62 Aligned_cols=81 Identities=19% Similarity=0.101 Sum_probs=46.6
Q ss_pred ccCCccccchhhh------cCccEEEEccccc---cCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHH
Q 018696 140 MLLCESELDKNLI------KQGSIFHYGSISL---IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIM 210 (351)
Q Consensus 140 ~~~~~~~i~~~~i------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~ 210 (351)
..++++++....- ....+++++...- ....+.+.+.++.+.|+++|+++.+|-.. +|.-.......+.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR---l~~a~~~~~~~~~ 180 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR---LANAAAALGVSLA 180 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT---HHHHHCHHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh---HHHhhhcccccHH
Confidence 5677777753211 2345677665443 23355788889999999999999999741 1111112344556
Q ss_pred HhhhcCcEEEeCH
Q 018696 211 SIWDQADIIKVSD 223 (351)
Q Consensus 211 ~~l~~~dvl~~N~ 223 (351)
++..++|++.+.-
T Consensus 181 e~~~~~D~v~~~~ 193 (290)
T PF01212_consen 181 EIAAGADSVSFGG 193 (290)
T ss_dssp HHHTTSSEEEEET
T ss_pred HHhhhCCEEEEEE
Confidence 6666777766643
No 116
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=37.80 E-value=28 Score=24.11 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.4
Q ss_pred ccCCCCchHHHHHHHHHHHh
Q 018696 281 VDTTGAGDSFVSGILNCLAA 300 (351)
Q Consensus 281 vd~tGaGD~f~ag~~~~l~~ 300 (351)
....|..++|++||+.|+.-
T Consensus 44 lr~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 44 LRKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHHccccHHHHHHHHHHHHH
Confidence 34469999999999999853
No 117
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=36.73 E-value=1.1e+02 Score=27.05 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHH--------HHHHHHHhh-hcCcEEEeCHHHHhhhcCCCCCChhHHHH
Q 018696 172 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEA--------AREGIMSIW-DQADIIKVSDDEITFLTGGDDHNDDNVVL 242 (351)
Q Consensus 172 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~--------~~~~~~~~l-~~~dvl~~N~~E~~~l~~~~~~~~~~~~~ 242 (351)
..+.+....+...+++.++.|-.....-.+.++ ..+..+.+. +.+||+++-.-- +.+...+ +++
T Consensus 147 a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPv----yveGe~~---ea~ 219 (306)
T COG3684 147 AYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPV----YVEGEQE---EAA 219 (306)
T ss_pred HHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecce----eccCccH---HHH
Confidence 456667778888999999988433332233321 122222222 378888864332 1111111 233
Q ss_pred HHHhc----CCCeEEEEeeCCcceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Q 018696 243 EKLFH----PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFA 318 (351)
Q Consensus 243 ~~l~~----~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a 318 (351)
+.+.+ ...+.++++-|-.--++. ..+.+....|| .|+++|.+- +..++..|
T Consensus 220 ~~f~~~~~~~~lP~i~LSAGV~~klF~----------~tv~fA~eaGA-----sGvL~GRAt----------Wa~~v~~g 274 (306)
T COG3684 220 AAFQRQNDHINLPWIYLSAGVSAKLFQ----------RTVRFAMEAGA-----SGVLAGRAT----------WAGVVEQG 274 (306)
T ss_pred HHHHHhhcCCCCCeEEEecCccHHHhH----------HHHHHHHHcCC-----ceeEechhh----------hhcccccC
Confidence 33333 356777777765333221 12344555666 666666654 44555555
Q ss_pred HHHHhHHhcccCCCCCCCCHHHHHHHHhhhc
Q 018696 319 NACGALTVTERGAIPALPTKEAALKLLHTVA 349 (351)
Q Consensus 319 ~~~Aa~~i~~~g~~~~~~~~~~v~~~l~~~~ 349 (351)
-.++-..+...| .|+..++.+.+.++.
T Consensus 275 ~d~~re~Lrt~g----~~ni~eL~~vlde~a 301 (306)
T COG3684 275 EDAAREWLRTVG----FPNLDELNKVLDETA 301 (306)
T ss_pred cHHHHHHHHhhc----cccHHHHHHHHHHhh
Confidence 556666666654 478899999887653
No 118
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=36.43 E-value=58 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCee
Q 018696 67 VAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVR 108 (351)
Q Consensus 67 ~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~ 108 (351)
+-..+++-|..+..-+.+=.. .-..+...|++.||++.++.
T Consensus 93 ai~~la~aGD~iVss~~LYGG-T~~lf~~tl~~~Gi~v~fvd 133 (426)
T COG2873 93 AILNLAGAGDNIVSSSKLYGG-TYNLFSHTLKRLGIEVRFVD 133 (426)
T ss_pred HHHHhccCCCeeEeeccccCc-hHHHHHHHHHhcCcEEEEeC
Confidence 344566668887777765554 55667778899999876653
No 119
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=36.41 E-value=1.3e+02 Score=29.16 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhhcCCCCCChhH---HHHHHHhc
Q 018696 171 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDN---VVLEKLFH 247 (351)
Q Consensus 171 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~---~~~~~l~~ 247 (351)
.....++-+...++|.++-.|-. ...+....++.-+.++.+++.+++|+++|--+- -.+.+.. ..++.|.+
T Consensus 115 ~~~~~~i~~l~~~yGl~vdp~~~-V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaV-----LTP~E~~~lf~~l~~l~~ 188 (501)
T COG3845 115 RQARARIKELSERYGLPVDPDAK-VADLSVGEQQRVEILKALYRGARLLILDEPTAV-----LTPQEADELFEILRRLAA 188 (501)
T ss_pred HHHHHHHHHHHHHhCCCCCccce-eecCCcchhHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 35556667777778877544321 122223445667889999999999999876221 1222222 24567777
Q ss_pred CCCeEEEEee
Q 018696 248 PNLKLLIVTE 257 (351)
Q Consensus 248 ~g~~~vvvt~ 257 (351)
.|...++||+
T Consensus 189 ~G~tIi~ITH 198 (501)
T COG3845 189 EGKTIIFITH 198 (501)
T ss_pred CCCEEEEEec
Confidence 8888888875
No 120
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=35.96 E-value=1.1e+02 Score=22.32 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 65 ANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 65 ~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
.-....|.+.|.++.++|.=+.. ..+.+.+.|++.|++.
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~-s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSR-SREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS--HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CHHHHHHHHHhcCcCC
Confidence 56777888889999999988875 6677888899999874
No 121
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=35.79 E-value=2.6e+02 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=21.3
Q ss_pred cCCChHHHHHHHHHHcCCCeEEEeecCCC
Q 018696 59 APGGAPANVAVGISRLGGSSAFVGKLGDD 87 (351)
Q Consensus 59 ~~GG~~~n~a~~l~~lG~~v~~v~~vG~D 87 (351)
-.||.|.|+.-.+.+.|.+-.=+-++-.|
T Consensus 7 GvGg~G~n~v~~l~~~~~~~~~~~a~ntD 35 (304)
T cd02201 7 GVGGGGGNAVNRMIESGLEGVEFIAANTD 35 (304)
T ss_pred EeCCcHHHHHHHHHHcCCCCceEEEEECC
Confidence 47999999999999998643323335566
No 122
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=35.74 E-value=28 Score=33.37 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.0
Q ss_pred ceeeecCccc-ccccCCCCchHHHHHHHHHHH
Q 018696 269 FKGRVPGVKT-KAVDTTGAGDSFVSGILNCLA 299 (351)
Q Consensus 269 ~~~~v~~~~~-~~vd~tGaGD~f~ag~~~~l~ 299 (351)
....+|..-+ +++.|+|-||+++||-..+++
T Consensus 416 ~~~~iPt~~v~~P~sTVGlGDtisa~af~~~l 447 (453)
T PRK14039 416 SVCILPTLVSKSPVTTVGLGDTLTAGTFLRLL 447 (453)
T ss_pred eEEEechhhccCCccccccCccccHHHHHHHH
Confidence 4556666654 699999999999887655554
No 123
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=34.83 E-value=1e+02 Score=25.09 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=37.3
Q ss_pred ccCCCh-HHHHHHHHHHcCCCeEEEe-ecCCChHHHHHHHHHHHCCCCCCCe
Q 018696 58 KAPGGA-PANVAVGISRLGGSSAFVG-KLGDDEFGYMLANILKENNVDTSGV 107 (351)
Q Consensus 58 ~~~GG~-~~n~a~~l~~lG~~v~~v~-~vG~D~~g~~i~~~l~~~gid~~~v 107 (351)
.+.||+ ..-+|+.|.+||.++.+|+ .+|--+.++.-.+.....|.+..-+
T Consensus 6 LfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl 57 (198)
T COG2117 6 LFSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVL 57 (198)
T ss_pred EecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCccee
Confidence 456776 4567889999999999999 5774447777777888878766533
No 124
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=34.70 E-value=3.8e+02 Score=24.88 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCccccCCChHHHHHHHHHHcCCCeEEEeecCCC-hHHHHHHHHHHHCCCCC
Q 018696 54 PAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDD-EFGYMLANILKENNVDT 104 (351)
Q Consensus 54 ~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D-~~g~~i~~~l~~~gid~ 104 (351)
-+..-.|||+....|..+..-|.. |-++--+ .-.+.+.+.+++.|+..
T Consensus 161 lD~cAAPGGKTthla~~~~~~~~i---V~A~D~~~~Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 161 LDLCAAPGGKTTHLAELMENEGAI---VVAVDVSPKRLKRLRENLKRLGVRN 209 (355)
T ss_pred EEECCCCCCHHHHHHHhcCCCCce---EEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 356778999966665555443433 2333333 34677899999999986
No 125
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.41 E-value=1.8e+02 Score=27.58 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCeEEEcCCCCCC
Q 018696 174 QLAAMNLAKESGSILSYDPNLRLP 197 (351)
Q Consensus 174 ~~~~~~~a~~~~~~v~~d~~~~~~ 197 (351)
+.++.+.|+++|+.+++|-....+
T Consensus 181 I~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 181 IEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred HHHHHHHHhhCCCEEEEeCCcCcc
Confidence 346778888999999999765443
No 126
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=33.73 E-value=98 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=31.2
Q ss_pred HHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCC
Q 018696 67 VAVGISRLGGSSAFVGKLGDDEFGYMLANILKENN 101 (351)
Q Consensus 67 ~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~g 101 (351)
......++|.++.|.++-+.|-..+.+.+.|.+.|
T Consensus 26 ~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 26 KAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 44567899999999999999989999999999987
No 127
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=33.49 E-value=46 Score=27.14 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=29.7
Q ss_pred cCCChHHHHHHHHHHcCCCeEEEeecCCC---hHHHHHHHHHHHCCC
Q 018696 59 APGGAPANVAVGISRLGGSSAFVGKLGDD---EFGYMLANILKENNV 102 (351)
Q Consensus 59 ~~GG~~~n~a~~l~~lG~~v~~v~~vG~D---~~g~~i~~~l~~~gi 102 (351)
.-||.|+-+|+.|++.|.+|.++..-..+ ...+.-.+.+++.|+
T Consensus 36 nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (169)
T PF03853_consen 36 NNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGI 82 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-
T ss_pred CChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCC
Confidence 35888999999999999999885543322 234444556666664
No 128
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=33.13 E-value=2.1e+02 Score=25.21 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=62.4
Q ss_pred hhhhcCccEEEEccccccC-------c------hhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhc
Q 018696 149 KNLIKQGSIFHYGSISLIA-------E------PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ 215 (351)
Q Consensus 149 ~~~i~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~ 215 (351)
.+.++++++++.+|+.+.- . ...+....+++.+.+.+.+|++=-+... ..++..+.+....+.
T Consensus 59 ~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~----V~~~a~~~l~~~~p~ 134 (253)
T COG1922 59 REILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPG----VAEQAAAKLRAKYPG 134 (253)
T ss_pred HHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHH----HHHHHHHHHHHHCCC
Confidence 3567788888887765311 0 1246778888888888888888654221 234556666666666
Q ss_pred CcEEEeCHHHHhhhcCCCCCChhHHHHHHHhcCCCeEEEEeeCC
Q 018696 216 ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGS 259 (351)
Q Consensus 216 ~dvl~~N~~E~~~l~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~ 259 (351)
.+++-.+. |--+.++.+.+++++...++..++|-+|.
T Consensus 135 l~ivg~h~-------GYf~~~e~~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 135 LKIVGSHD-------GYFDPEEEEAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred ceEEEecC-------CCCChhhHHHHHHHHHhcCCCEEEEeCCC
Confidence 66666542 11111222346677778888888887775
No 129
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.57 E-value=2.1e+02 Score=25.13 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHH------HhhhcC--C---------C
Q 018696 171 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDE------ITFLTG--G---------D 233 (351)
Q Consensus 171 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E------~~~l~~--~---------~ 233 (351)
.+.+..+.+.+++.|++++-++-. . ..+..+.+++|++++--.+ ++.+.+ . .
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d-------~----~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~ 133 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMS-------E----RQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMA 133 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCC-------H----HHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCC
Confidence 356777888888999999999842 2 2233334578988854332 222221 1 1
Q ss_pred CCChhHHHHHHHhcCCCeEEEEee-CCcc
Q 018696 234 DHNDDNVVLEKLFHPNLKLLIVTE-GSKG 261 (351)
Q Consensus 234 ~~~~~~~~~~~l~~~g~~~vvvt~-G~~G 261 (351)
..++...+++.+.+.|.+.+++.. |-.+
T Consensus 134 t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 134 TIEEYLGALSYLQDTGKSNIILCERGVRG 162 (250)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEccccCC
Confidence 234445567888888887666665 5433
No 130
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=32.44 E-value=81 Score=22.71 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 61 GGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 61 GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
+|.+...+..+...|.++.+.+.+|... ...|++.||..
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~a-----~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGPA-----AAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCccH-----HHHHHHcCCEE
Confidence 4667889999999999999999998763 45778889864
No 131
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=32.38 E-value=2.1e+02 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCeEEEcCCC
Q 018696 174 QLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 174 ~~~~~~~a~~~~~~v~~d~~~ 194 (351)
+.++.+.++++|+++++|-..
T Consensus 165 l~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 457778888899999999754
No 132
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=30.94 E-value=4.3e+02 Score=24.54 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=52.4
Q ss_pred CCCeEEEeecCCChHHHHHHHHHHH-CCCCCCCeeec-CCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhh
Q 018696 75 GGSSAFVGKLGDDEFGYMLANILKE-NNVDTSGVRYD-STARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLI 152 (351)
Q Consensus 75 G~~v~~v~~vG~D~~g~~i~~~l~~-~gid~~~v~~~-~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i 152 (351)
+.++.++|+-| ..|+.+.+.|.+ ..++...+... ..... |++. .+ ...+ +..+.++...+
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~sa----------Gk~~-~~---~~~~--l~v~~~~~~~~ 66 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSA----------GKTV-QF---KGRE--IIIQEAKINSF 66 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccC----------CCCe-ee---CCcc--eEEEeCCHHHh
Confidence 46778888877 589999999995 56664433222 12122 2222 11 1111 22222333445
Q ss_pred cCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCC
Q 018696 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 194 (351)
.+.|++.++. +.+...++...+.+.|+ +++|.+.
T Consensus 67 ~~~Divf~a~-------~~~~s~~~~~~~~~~G~-~VID~Ss 100 (347)
T PRK06728 67 EGVDIAFFSA-------GGEVSRQFVNQAVSSGA-IVIDNTS 100 (347)
T ss_pred cCCCEEEECC-------ChHHHHHHHHHHHHCCC-EEEECch
Confidence 6788876543 23466677777777775 6677654
No 133
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=30.43 E-value=65 Score=31.39 Aligned_cols=79 Identities=11% Similarity=0.200 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhh----hcCcEEEeCHHHHhhhc------CCCCCChhH
Q 018696 170 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIW----DQADIIKVSDDEITFLT------GGDDHNDDN 239 (351)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l----~~~dvl~~N~~E~~~l~------~~~~~~~~~ 239 (351)
..+.+..++..++..|+.+++-|=. +..++.++ .-+++|.+|..|-.... +-..+++++
T Consensus 304 ~~~~l~~i~aqaqq~G~~~VVGPLl-----------K~nVe~L~~~~q~~i~vLALN~~~n~r~~~~~cyfaLSPEDEa~ 372 (604)
T COG3107 304 SAQPLDAILAQAQQDGADFVVGPLL-----------KPNVEALLASNQQPIPVLALNQPENSRNPAQLCYFALSPEDEAR 372 (604)
T ss_pred CcccHHHHHHHHHhcCCcEEecccc-----------chhHHHHHhCcCCCCceeeecCCccccCcccceeeecChhHHHH
Confidence 3455667888899999999998732 23344443 35699999998876643 233556777
Q ss_pred HHHHHHhcCCCe--EEEEeeCC
Q 018696 240 VVLEKLFHPNLK--LLIVTEGS 259 (351)
Q Consensus 240 ~~~~~l~~~g~~--~vvvt~G~ 259 (351)
.+++++...|.+ .|++..++
T Consensus 373 ~AA~~l~~qG~R~plvlvPr~~ 394 (604)
T COG3107 373 DAANHLWDQGKRNPLVLVPRND 394 (604)
T ss_pred HHHHHHHHccccCceEEecchH
Confidence 788999998876 45555544
No 134
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=30.19 E-value=3.7e+02 Score=23.88 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=43.4
Q ss_pred hhhhcCccEEEEccccccCch-h---HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEe
Q 018696 149 KNLIKQGSIFHYGSISLIAEP-C---RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (351)
Q Consensus 149 ~~~i~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~ 221 (351)
...+..+|++.++|-.+..+. . .-.+..++..++..|.++++=++...++. . ...+.....+++++|.+.+
T Consensus 59 ~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~-~-~~~r~~~~~~l~~~~~i~v 133 (298)
T TIGR03609 59 LRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLR-R-RLSRWLVRRVLRGCRAISV 133 (298)
T ss_pred HHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcC-C-HHHHHHHHHHHccCCEEEE
Confidence 356788998887665443321 1 11223455667778888777555443322 1 2345567778999999987
No 135
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.01 E-value=83 Score=29.79 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEe
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVG 82 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~ 82 (351)
...++++.|..+.+.+=.+.... ..+.|+.|.-+|..+++.|.+|.+++
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~is-------N~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYIT-------NRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CCCEEEEeCCCccccccceeeec-------cCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 34678888887766553322111 24566689999999999999999886
No 136
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=29.97 E-value=3.7e+02 Score=24.61 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=53.1
Q ss_pred CeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCcc
Q 018696 77 SSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGS 156 (351)
Q Consensus 77 ~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~ 156 (351)
++.+ |+.| ..|+.+++.|++.++....+....... ...| +.+.+ .+ ..+.-+.+....+++.|
T Consensus 5 ~iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~~--------~s~g-k~i~f---~g--~~~~V~~l~~~~f~~vD 67 (322)
T PRK06901 5 NIAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIEP--------FGEE-QGIRF---NN--KAVEQIAPEEVEWADFN 67 (322)
T ss_pred eEEE-ecCc--HHHHHHHHHHHhcCCchhheeeccccc--------ccCC-CEEEE---CC--EEEEEEECCccCcccCC
Confidence 4555 6666 589999999999998777554433210 1112 11111 11 11333344455677889
Q ss_pred EEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCC
Q 018696 157 IFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPN 193 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 193 (351)
+..+.+ .+...++...+.+.|+. ++|-+
T Consensus 68 ia~fag--------~~~s~~~ap~a~~aG~~-VIDnS 95 (322)
T PRK06901 68 YVFFAG--------KMAQAEHLAQAAEAGCI-VIDLY 95 (322)
T ss_pred EEEEcC--------HHHHHHHHHHHHHCCCE-EEECC
Confidence 886622 34667777788888875 46654
No 137
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=29.26 E-value=2.4e+02 Score=24.40 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=42.6
Q ss_pred hhhcCccEEEEccccccCchhHHHHHHHHHHHH-HcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEE----eCHH
Q 018696 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK-ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK----VSDD 224 (351)
Q Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~----~N~~ 224 (351)
..-...|.+.+++..- ...+...++++..+ +.++|+++-|+.... +.+++|.++ +|-.
T Consensus 37 ~~~~GTDaImIGGS~g---vt~~~~~~~v~~ik~~~~lPvilfP~~~~~--------------is~~aDavff~svLNS~ 99 (240)
T COG1646 37 AAEAGTDAIMIGGSDG---VTEENVDNVVEAIKERTDLPVILFPGSPSG--------------ISPYADAVFFPSVLNSD 99 (240)
T ss_pred HHHcCCCEEEECCccc---ccHHHHHHHHHHHHhhcCCCEEEecCChhc--------------cCccCCeEEEEEEecCC
Confidence 3445689999988642 23345566777777 789999999975322 234677554 5666
Q ss_pred HHhhhcCC
Q 018696 225 EITFLTGG 232 (351)
Q Consensus 225 E~~~l~~~ 232 (351)
....+.|.
T Consensus 100 n~~~i~ga 107 (240)
T COG1646 100 NPYWIVGA 107 (240)
T ss_pred Ccccccch
Confidence 65555553
No 138
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=28.56 E-value=3e+02 Score=25.44 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=51.3
Q ss_pred HcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeec-CCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhh
Q 018696 73 RLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYD-STARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNL 151 (351)
Q Consensus 73 ~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~-~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 151 (351)
.-..+|.++|.-|. .|..+.+.|.+.+....-+... ..+..+..+-. .+ . .+..+.++...
T Consensus 5 ~~~~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~---~~-----------~--~~~v~~~~~~~ 66 (344)
T PLN02383 5 ENGPSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF---EG-----------R--DYTVEELTEDS 66 (344)
T ss_pred CCCCeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee---cC-----------c--eeEEEeCCHHH
Confidence 34567888888774 8999999998865432222211 11111111111 11 1 12222333344
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCC
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 194 (351)
+.++|++.++. +.+...++...+.+.|+ .++|.+.
T Consensus 67 ~~~~D~vf~a~-------p~~~s~~~~~~~~~~g~-~VIDlS~ 101 (344)
T PLN02383 67 FDGVDIALFSA-------GGSISKKFGPIAVDKGA-VVVDNSS 101 (344)
T ss_pred HcCCCEEEECC-------CcHHHHHHHHHHHhCCC-EEEECCc
Confidence 57788886543 23455666666766665 5678754
No 139
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=28.38 E-value=1.3e+02 Score=20.99 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCC
Q 018696 67 VAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNV 102 (351)
Q Consensus 67 ~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gi 102 (351)
.+....++|.++.+.++-..|-..+.+.+.|.+.|-
T Consensus 24 ~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kgK 59 (77)
T TIGR03853 24 KAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKGK 59 (77)
T ss_pred HHHHHHHhCCCceEeecccccCCHHHHHHHHHHCCC
Confidence 556678999999999999999899999999999873
No 140
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.13 E-value=1.7e+02 Score=22.04 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=28.2
Q ss_pred hhHHHHHHHhcCCCeEEEEeeCCcceEEEecCceeeecCcc
Q 018696 237 DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVK 277 (351)
Q Consensus 237 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~v~~~~ 277 (351)
+..++++.+.+.|++.+.+|.....-+....+....++...
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~ 102 (128)
T cd05014 62 ELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVEE 102 (128)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCCCc
Confidence 34456788888999999999987666555445455554433
No 141
>PRK09620 hypothetical protein; Provisional
Probab=27.79 E-value=1.1e+02 Score=26.31 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=35.8
Q ss_pred CceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeec
Q 018696 28 DRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKL 84 (351)
Q Consensus 28 ~~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~v 84 (351)
.++|++.+..+.+.+=.+.... ..+.|=.|.++|..|.+.|.+|.++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~it-------N~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHT-------NMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEec-------CCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3578888888766654332211 2456777999999999999999988744
No 142
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.73 E-value=2.2e+02 Score=26.89 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=31.4
Q ss_pred CCCccccCCChHHHHHHHHHHc--CCCeEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 018696 53 APAFKKAPGGAPANVAVGISRL--GGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (351)
Q Consensus 53 ~~~~~~~~GG~~~n~a~~l~~l--G~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v 107 (351)
+.....++.|.+.-.+..++-+ |..+.+...+=. ..-..+...++++||++.++
T Consensus 78 ~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG-~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 78 GEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYG-GTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccc-hHHHHHHHHHHhcCeEEEEE
Confidence 3345567777766666555444 555555443212 24456677778888876543
No 143
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=26.93 E-value=4.5e+02 Score=23.34 Aligned_cols=72 Identities=19% Similarity=0.130 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEe-----CHHHHhhhcCCCCCChhHHHHHHH
Q 018696 171 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----SDDEITFLTGGDDHNDDNVVLEKL 245 (351)
Q Consensus 171 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~-----N~~E~~~l~~~~~~~~~~~~~~~l 245 (351)
.+.+.++++.+++.|..+.++-+... . .+.+.++++..|++.+ +.+....+.|.. .+...+.++.+
T Consensus 140 ~~~l~~l~~~~k~~g~~~~i~TnG~~----~----~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~-~~~vl~~i~~l 210 (295)
T TIGR02494 140 PEFALALLQACHERGIHTAVETSGFT----P----WETIEKVLPYVDLFLFDIKHLDDERHKEVTGVD-NEPILENLEAL 210 (295)
T ss_pred HHHHHHHHHHHHHcCCcEeeeCCCCC----C----HHHHHHHHhhCCEEEEeeccCChHHHHHHhCCC-hHHHHHHHHHH
Confidence 34556889999999988888765422 1 1334555666777553 344455566642 23333456667
Q ss_pred hcCCCe
Q 018696 246 FHPNLK 251 (351)
Q Consensus 246 ~~~g~~ 251 (351)
.+.+.+
T Consensus 211 ~~~~~~ 216 (295)
T TIGR02494 211 AAAGKN 216 (295)
T ss_pred HhCCCc
Confidence 766654
No 144
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=26.53 E-value=2.7e+02 Score=26.08 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=52.1
Q ss_pred CeEEEeecCCChHHHHHHHHHH-HCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccch-hhhcC
Q 018696 77 SSAFVGKLGDDEFGYMLANILK-ENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK-NLIKQ 154 (351)
Q Consensus 77 ~v~~v~~vG~D~~g~~i~~~l~-~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~-~~i~~ 154 (351)
+|.++|+-| ..|+.+++.|. +..+....+....+... +.....+ .+.. ...+.+.. ..+.+
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss~~s----------~g~~~~f---~~~~--~~v~~~~~~~~~~~ 64 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFSTSQL----------GQAAPSF---GGTT--GTLQDAFDIDALKA 64 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEchhh----------CCCcCCC---CCCc--ceEEcCcccccccC
Confidence 466777766 58999999888 55665333322222111 1111111 0111 11222222 24677
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHcCCe-EEEcCCC
Q 018696 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNL 194 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~ 194 (351)
.|++.++. ..+...++...+.+.|.+ +++|-++
T Consensus 65 vDivffa~-------g~~~s~~~~p~~~~aG~~~~VIDnSS 98 (366)
T TIGR01745 65 LDIIITCQ-------GGDYTNEIYPKLRESGWQGYWIDAAS 98 (366)
T ss_pred CCEEEEcC-------CHHHHHHHHHHHHhCCCCeEEEECCh
Confidence 88886653 235667788888999974 7888754
No 145
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.50 E-value=1.8e+02 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHcCCCeEEEe
Q 018696 60 PGGAPANVAVGISRLGGSSAFVG 82 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~ 82 (351)
-||.|+-+|+.|...|.+|.++-
T Consensus 72 NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 72 NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CchhHHHHHHHHHHCCCeEEEEE
Confidence 69999999999999999998886
No 146
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=26.23 E-value=3.6e+02 Score=22.20 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=46.2
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHh
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT 227 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~ 227 (351)
+++.+...|..+ ..+.+..+-+..+++|+-++.||.+ ..+.-+..+.+.++.+--.++...++.
T Consensus 22 d~~~I~T~Gs~i----~~~~i~~i~~~~~~rgVIIfTDpD~------~GekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 22 DVDVIETNGSAL----KDETINLIKKAQKKQGVIILTDPDF------PGEKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CceEEEECCCcc----CHHHHHHHHHHhhcCCEEEEeCCCC------chHHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 467777766532 4455665656666788889999964 355778888888888888888888875
No 147
>PRK07121 hypothetical protein; Validated
Probab=25.77 E-value=1.2e+02 Score=29.52 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHHcCCCeEEEee
Q 018696 60 PGGAPANVAVGISRLGGSSAFVGK 83 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~~ 83 (351)
.|++|.-+|+.+++.|.+|.++-.
T Consensus 28 aG~AGl~AA~~aae~G~~VillEK 51 (492)
T PRK07121 28 FGAAGACAAIEAAAAGARVLVLER 51 (492)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeC
Confidence 677888999999999998888753
No 148
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=25.68 E-value=95 Score=25.83 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=25.3
Q ss_pred ceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEeec
Q 018696 29 RLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKL 84 (351)
Q Consensus 29 ~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~v 84 (351)
.+|++.+..+..-+=.+... ...+.|-.|...|..+.+.|.+|.++.--
T Consensus 4 k~vlITaG~T~E~iD~VR~I-------tN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFI-------TNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp -EEEEEESB-EEESSSSEEE-------EES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CEEEEECCCccccCCCceEe-------cCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 45666666655544322111 12456666777777777777777777643
No 149
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=25.59 E-value=60 Score=23.04 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=33.7
Q ss_pred ccCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 58 KAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 58 ~~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
...+|.+...+..|...|.++.+++.+|.. ..+.|++.||.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~iG~~-----~~~~L~~~gI~v 77 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGIGEG-----AFRALKEAGIKV 77 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCSCHH-----HHHHHHHTTSEE
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCCCHH-----HHHHHHHCCCEE
Confidence 455677888899999999999999988754 456888889863
No 150
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=24.93 E-value=1.1e+02 Score=28.75 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=34.8
Q ss_pred CCceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEee
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGK 83 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~~ 83 (351)
+..++++.|....+.+=.+.... ..+.|+.|.-+|..+...|.+|.+++.
T Consensus 184 ~~~~vlit~g~t~E~iD~VR~it-------N~SSG~~g~~~a~~~~~~Ga~V~~~~g 233 (390)
T TIGR00521 184 EGKRVLITAGPTREPIDPVRFIS-------NLSSGKMGLALAEAAYKRGADVTLITG 233 (390)
T ss_pred CCceEEEecCCccCCCCceeeec-------CCCcchHHHHHHHHHHHCCCEEEEeCC
Confidence 45678888887744443222111 245677999999999999999998873
No 151
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=24.86 E-value=2.6e+02 Score=19.94 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHHHHhhhc
Q 018696 287 GDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLLHTVA 349 (351)
Q Consensus 287 GD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~l~~~~ 349 (351)
.|..+-++++-+ .|.+ +..+...+|...-..--+..|...+.|+...+..++..++
T Consensus 22 ~~iL~i~~~a~l-~G~~------~~~~i~~~~~~~~~~l~~~l~~~~~~PS~~Ti~rvl~~ld 77 (90)
T PF13808_consen 22 ADILLIALCAVL-CGAD------SWREIAEWARAHEEWLRKRLGLPRGVPSHDTIRRVLSRLD 77 (90)
T ss_pred HHHHHHHHHHHH-Hccc------cHHHHHHHHHHhHHHHHHhcCCCCCCCcHHHHHHHHHHCC
Confidence 455555555555 4544 3899999999998888888888778999999999988765
No 152
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.62 E-value=1.2e+02 Score=29.36 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCceEEEEccceeecccCCCCCCCCCCCCccccCCChHHHHHHHHHHcCCCeEEEe
Q 018696 27 YDRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVG 82 (351)
Q Consensus 27 ~~~~i~v~G~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~v~ 82 (351)
...+|+|.+..+.+.+=.+.... ..+.|=.|+-.|.+++++|.+|++|+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~It-------N~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIA-------NRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred CCCEEEEecCCccccCCcceeeC-------CCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 34578888887776664433222 25677779999999999999999998
No 153
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=24.62 E-value=2.9e+02 Score=21.89 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=40.0
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHH
Q 018696 156 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDE 225 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E 225 (351)
+.+.++|- +...+.+.++++.+++.|..+.++-+... .+...++++++|+++...-+
T Consensus 63 ~gVt~SGG----El~~~~l~~ll~~lk~~Gl~i~l~Tg~~~---------~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 63 SCVLFLGG----EWNREALLSLLKIFKEKGLKTCLYTGLEP---------KDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred CEEEEech----hcCHHHHHHHHHHHHHCCCCEEEECCCCC---------HHHHHHHHHhCCEEEEChHH
Confidence 34555543 24456778899999999999999876322 12456678899999988754
No 154
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=24.44 E-value=2.9e+02 Score=24.21 Aligned_cols=55 Identities=20% Similarity=0.072 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH-----H--hHHhcccCCCCCCCCHHHHHHHHhh
Q 018696 286 AGDSFVSGILNCLAADQNLIKDENRLREALLFANAC-----G--ALTVTERGAIPALPTKEAALKLLHT 347 (351)
Q Consensus 286 aGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~-----A--a~~i~~~g~~~~~~~~~~v~~~l~~ 347 (351)
.||.+.+.+..+...|.+ +++|++.++.- . -..+...|-...-.+.++++.+=++
T Consensus 185 lGDlLFalvnlAr~~giD-------pE~ALr~a~~KF~~Rf~~~E~~~~~~g~~~~~~slee~~~lW~~ 246 (248)
T TIGR00444 185 MGDLLFATVNLARHLKTD-------AEIALQKANEKFERRFREVERIVAARGLELTGVDLEEMEELWQQ 246 (248)
T ss_pred HHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 599999999999999999 99999977632 1 1122333433344577777776554
No 155
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=24.25 E-value=4.9e+02 Score=24.37 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=52.4
Q ss_pred CeEEEeecCCChHHHHHHH-HHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccc-hhhhcC
Q 018696 77 SSAFVGKLGDDEFGYMLAN-ILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD-KNLIKQ 154 (351)
Q Consensus 77 ~v~~v~~vG~D~~g~~i~~-~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~~~i~~ 154 (351)
++.++|+-| ..|+.+.+ .|++..+....+....... .|.+...+ .+ .. .....+. ...+.+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~----------sg~~~~~f-~g--~~--~~v~~~~~~~~~~~ 65 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQ----------AGGAAPSF-GG--KE--GTLQDAFDIDALKK 65 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchh----------hCCccccc-CC--Cc--ceEEecCChhHhcC
Confidence 566777766 58888887 7787777654443322211 12222111 11 00 1111111 234567
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHcCCe-EEEcCCC
Q 018696 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNL 194 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~ 194 (351)
+|++.++. +.+...++...+.+.|.+ +++|.+.
T Consensus 66 ~Divf~a~-------~~~~s~~~~~~~~~aG~~~~VID~Ss 99 (369)
T PRK06598 66 LDIIITCQ-------GGDYTNEVYPKLRAAGWQGYWIDAAS 99 (369)
T ss_pred CCEEEECC-------CHHHHHHHHHHHHhCCCCeEEEECCh
Confidence 88876653 345667778888888875 7888764
No 156
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.20 E-value=1.7e+02 Score=21.10 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=29.3
Q ss_pred hhhhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCC
Q 018696 149 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPN 193 (351)
Q Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 193 (351)
+..+..+|++++ +.+-........+-+.|++.++|+++--+
T Consensus 43 ~~~i~~aD~VIv----~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 43 PSKIKKADLVIV----FTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHhcCCCCEEEE----EeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 446778898753 12233556777888999999999988763
No 157
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.17 E-value=1.1e+02 Score=29.65 Aligned_cols=45 Identities=24% Similarity=0.179 Sum_probs=32.9
Q ss_pred cCCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 59 APGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 59 ~~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
-.|+.|.-+|..|++.|.+|.++-.-.. .....+.+.|++.||.+
T Consensus 23 G~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~ 67 (480)
T PRK01438 23 GLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATV 67 (480)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEE
Confidence 4688889899999999999887653222 24455667788888764
No 158
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=24.16 E-value=1.3e+02 Score=27.24 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHcCCCeEEEee
Q 018696 60 PGGAPANVAVGISRLGGSSAFVGK 83 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~~ 83 (351)
.|+.|...|..|++.|.+|.+++.
T Consensus 13 ~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 13 TGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEe
Confidence 788899999999999999999986
No 159
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.78 E-value=4e+02 Score=23.02 Aligned_cols=90 Identities=13% Similarity=0.030 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEEeCHHHHhhh----cC-----CCC---CChhHHHH
Q 018696 175 LAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFL----TG-----GDD---HNDDNVVL 242 (351)
Q Consensus 175 ~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l----~~-----~~~---~~~~~~~~ 242 (351)
....+..+.+|.+.+.=.+-...+ ...-++..+.+ +..++++|+.++-+.. +. ... .+.-...+
T Consensus 106 daTa~~ik~~g~kkvgLLgT~~Tm--~~~fY~~~l~~--~gievvvPdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii 181 (230)
T COG1794 106 DATAKAIKAAGAKKVGLLGTRFTM--EQGFYRKRLEE--KGIEVVVPDDDEQAEVNRIIYEELCQGIVKDASRELYLAVI 181 (230)
T ss_pred HHHHHHHHhcCCceeEEeeccchH--HhHHHHHHHHH--CCceEecCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 344455556666544433322221 22234444444 4689999998875432 11 111 12223457
Q ss_pred HHHhcCCCeEEEEeeCCcceEEEecC
Q 018696 243 EKLFHPNLKLLIVTEGSKGCRYYTKE 268 (351)
Q Consensus 243 ~~l~~~g~~~vvvt~G~~G~~~~~~~ 268 (351)
++|.+.|+..|+.-+-+-+.++...+
T Consensus 182 ~~l~~~Gae~vIlGCTEi~lll~~~d 207 (230)
T COG1794 182 ERLAERGAEGVILGCTEIPLLLSQDD 207 (230)
T ss_pred HHHHHcCCCEEEEeccchheeecCCc
Confidence 88888999999988888888776544
No 160
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.27 E-value=3.5e+02 Score=25.78 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCC
Q 018696 60 PGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid 103 (351)
.|+.|.-+|..|++.|.+|.++..-..+.. +...+.|.+.|++
T Consensus 13 ~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 13 AGVSGLALAKFLKKLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 566788999999999999988765332322 2233456666654
No 161
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=23.07 E-value=3.3e+02 Score=25.54 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=24.4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCC
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 195 (351)
+.+++++........... -+.++.+.++++++++++|-...
T Consensus 144 ~tklV~le~p~Np~G~v~-dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLI-DMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCc
Confidence 445666554332211111 24567778888999999997643
No 162
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=23.06 E-value=3.5e+02 Score=25.03 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCeEEEcCCC
Q 018696 174 QLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 174 ~~~~~~~a~~~~~~v~~d~~~ 194 (351)
+.++.+.++++|+++++|-..
T Consensus 144 l~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 144 IEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 457778889999999999754
No 163
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=22.90 E-value=5.4e+02 Score=23.66 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=49.2
Q ss_pred CCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCc
Q 018696 76 GSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQG 155 (351)
Q Consensus 76 ~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ 155 (351)
.++.++|+-| ..|..+.+.|.+.+....-+....+. ...|++.. + .+. .+..+.++...++++
T Consensus 5 ~~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~---------~~aG~~l~--~--~~~--~l~~~~~~~~~~~~v 67 (336)
T PRK05671 5 LDIAVVGATG--TVGEALVQILEERDFPVGTLHLLASS---------ESAGHSVP--F--AGK--NLRVREVDSFDFSQV 67 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECc---------ccCCCeec--c--CCc--ceEEeeCChHHhcCC
Confidence 4567777776 48999999999755432221111110 01122211 1 111 122222222335678
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCC
Q 018696 156 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 194 (351)
|++.+.. +.+....++..+.+.|++ ++|.+.
T Consensus 68 D~vFla~-------p~~~s~~~v~~~~~~G~~-VIDlS~ 98 (336)
T PRK05671 68 QLAFFAA-------GAAVSRSFAEKARAAGCS-VIDLSG 98 (336)
T ss_pred CEEEEcC-------CHHHHHHHHHHHHHCCCe-EEECch
Confidence 8876543 134566688888888764 788754
No 164
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=22.56 E-value=1.3e+02 Score=22.29 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=26.1
Q ss_pred ccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHH
Q 018696 281 VDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLF 317 (351)
Q Consensus 281 vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~ 317 (351)
.|..|-||..-|-++++|++|.- +.+||+..
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~i------t~eEavei 83 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKI------TIEEAVEI 83 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-------HHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccc------cHHHHHHH
Confidence 57789999999999999999985 37888774
No 165
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=22.47 E-value=5.7e+02 Score=23.60 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=25.7
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCC
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 194 (351)
+.+++++....... .....+.++.+.++++++.+++|-.+
T Consensus 136 ~tklv~le~P~NP~-~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 136 NTKAIFIETPTNPL-MQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CceEEEEECCCCCC-CcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 45666664432111 12345677888889999999999765
No 166
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=22.42 E-value=70 Score=23.63 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHhhhc
Q 018696 332 IPALPTKEAALKLLHTVA 349 (351)
Q Consensus 332 ~~~~~~~~~v~~~l~~~~ 349 (351)
.+++|+.+||+.||+.++
T Consensus 69 ~g~lPt~~eVe~Fl~~v~ 86 (105)
T PF09702_consen 69 VGYLPTDEEVEDFLDDVE 86 (105)
T ss_pred cCCCCChHHHHHHHHHHH
Confidence 368899999999998664
No 167
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=22.24 E-value=5.9e+02 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=21.6
Q ss_pred cCCChHHHHHHHHHHcCCC-eEEEeecCCC
Q 018696 59 APGGAPANVAVGISRLGGS-SAFVGKLGDD 87 (351)
Q Consensus 59 ~~GG~~~n~a~~l~~lG~~-v~~v~~vG~D 87 (351)
-.||.|.|++-.+.+.|.+ +.++ ++-.|
T Consensus 7 GvGg~G~n~v~~~~~~~~~~~~~i-ainTd 35 (303)
T cd02191 7 GFGGAGGNIVDKFLEYDKEGRSAV-AVNTD 35 (303)
T ss_pred EECchHHHHHHHHHHcCCCCccEE-EEECc
Confidence 4799999999999998854 4444 46677
No 168
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.03 E-value=1.5e+02 Score=21.30 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCC
Q 018696 61 GGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (351)
Q Consensus 61 GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~ 104 (351)
+|.+...+..|...|.++.+++.+|.. ..+.|++.||..
T Consensus 49 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----~~~~l~~~gI~v 87 (103)
T cd00851 49 GGAGGKAAEFLADEGVDVVIVGGIGPR-----ALNKLRNAGIKV 87 (103)
T ss_pred CCCchHHHHHHHHcCCCEEEeCCCCcC-----HHHHHHHCCCEE
Confidence 345577888888899999999988865 356788889864
No 169
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.84 E-value=4.1e+02 Score=24.73 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=25.3
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCC
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 194 (351)
+..++++........... -+.++.+.++++|+.+++|-..
T Consensus 131 ~tklv~le~psnptg~v~-dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIV-DIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred CceEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCC
Confidence 456676655432222111 2567788889999999999753
No 170
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=21.81 E-value=1.5e+02 Score=27.18 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCe-EEEcCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEeC---HHHHhhhcCCCCCChhHHHHHHHhc
Q 018696 173 TQLAAMNLAKESGSI-LSYDPNLRLPLWP-SEEAAREGIMSIWDQADIIKVS---DDEITFLTGGDDHNDDNVVLEKLFH 247 (351)
Q Consensus 173 ~~~~~~~~a~~~~~~-v~~d~~~~~~~~~-~~~~~~~~~~~~l~~~dvl~~N---~~E~~~l~~~~~~~~~~~~~~~l~~ 247 (351)
.=.++.+.++..|.+ +.+||........ ........+.++++.+|++++- .+|-+.+.+ .+.|..
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~----------~~~~a~ 222 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN----------AEELAK 222 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC----------HHHHhh
Confidence 334677888999987 5568732221000 0011224588899999999854 334333322 134444
Q ss_pred CCCeEEEEeeCCc
Q 018696 248 PNLKLLIVTEGSK 260 (351)
Q Consensus 248 ~g~~~vvvt~G~~ 260 (351)
+....++|-.+..
T Consensus 223 MK~gailIN~aRG 235 (324)
T COG0111 223 MKPGAILINAARG 235 (324)
T ss_pred CCCCeEEEECCCc
Confidence 4444577777553
No 171
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=21.45 E-value=56 Score=23.26 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=33.0
Q ss_pred ccccCCCCchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHhHHhcccCCCCCCCCHHHHHHHHhhhc
Q 018696 279 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLLHTVA 349 (351)
Q Consensus 279 ~~vd~tGaGD~f~ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~i~~~g~~~~~~~~~~v~~~l~~~~ 349 (351)
++||.++--..|+.|.++...+.. +.... . .-|+.|+|++||.+..
T Consensus 30 EIVDK~~~rEifi~G~~Ae~Fr~~--------V~~li------------~-----~~Pt~EevDdfL~~y~ 75 (85)
T PF12091_consen 30 EIVDKNARREIFIDGSWAEMFRED--------VQALI------------A-----SEPTQEEVDDFLGGYD 75 (85)
T ss_pred EEeecCCCceEEeCcHHHHHHHHH--------HHHHH------------h-----cCCCHHHHHHHHHHHH
Confidence 688999888999988887776521 11111 1 3379999999998765
No 172
>PRK09028 cystathionine beta-lyase; Provisional
Probab=21.43 E-value=5.2e+02 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=27.6
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCC
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 195 (351)
+.+++++....... .....+.++.+.++++|+.+++|-...
T Consensus 146 ~TklV~lespsNPt-g~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 146 NTKVLFLESPGSIT-MEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CceEEEEECCCCCC-CcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 45667666543322 123556788899999999999997543
No 173
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=21.36 E-value=1.6e+02 Score=24.92 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCC
Q 018696 60 PGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNV 102 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gi 102 (351)
.||-|..+|..|++.|.++.+++.-.. ...+.+.+.+++.+.
T Consensus 7 s~giG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~l~~~~~ 48 (239)
T TIGR01831 7 SRGIGRAIANRLAADGFEICVHYHSGR-SDAESVVSAIQAQGG 48 (239)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCC
Confidence 578899999999999999877765433 244555566665443
No 174
>PRK05967 cystathionine beta-lyase; Provisional
Probab=21.21 E-value=7e+02 Score=23.53 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=26.7
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCC
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 195 (351)
+.+++++...... .....-+.++.+.++++|+.+++|-.+.
T Consensus 149 ~TklV~lesPsNP-~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 149 NTKVVHTEAPGSN-TFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CceEEEEECCCCC-CCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 3456666543321 1133457788889999999999997643
No 175
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.16 E-value=2.6e+02 Score=24.66 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHH
Q 018696 62 GAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKE 99 (351)
Q Consensus 62 G~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~ 99 (351)
-++...|.-|..+|.++..+..||+|. +.|.+.++.
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~--~~I~~~l~~ 56 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNP--DRIVEALRE 56 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHHH
Confidence 356778899999999999999999983 445555554
No 176
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.14 E-value=3.3e+02 Score=23.60 Aligned_cols=42 Identities=10% Similarity=-0.090 Sum_probs=29.9
Q ss_pred hhcCccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCC
Q 018696 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (351)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 195 (351)
.....|.+.++|-.-+ ..+...++++..++..+|+++-|+..
T Consensus 29 ~~~gtdai~vGGS~~v---t~~~~~~~v~~ik~~~lPvilfp~~~ 70 (232)
T PRK04169 29 CESGTDAIIVGGSDGV---TEENVDELVKAIKEYDLPVILFPGNI 70 (232)
T ss_pred HhcCCCEEEEcCCCcc---chHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 4456799998886422 34556677777787889999998643
No 177
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=20.92 E-value=3.6e+02 Score=25.40 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=24.5
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHcCCeEEEcCCCC
Q 018696 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 195 (351)
+.+++++........... -+.++.+.++++|+++++|-.+.
T Consensus 149 ~tklV~ie~p~NPtg~v~-dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIV-DIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred CCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCcC
Confidence 356666544332111111 14567778899999999998654
No 178
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=20.91 E-value=3.5e+02 Score=24.50 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred CCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcC
Q 018696 75 GGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQ 154 (351)
Q Consensus 75 G~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 154 (351)
|+-++.+|+.| ..|..+.+.|.+.|-.+. +....+.......-...+-|+-.+..+ ...+++.| ...++.
T Consensus 61 GiVaTVFGAtG--FlGryvvnklak~GSQvi-iPyR~d~~~~r~lkvmGdLGQvl~~~f------d~~DedSI-r~vvk~ 130 (391)
T KOG2865|consen 61 GIVATVFGATG--FLGRYVVNKLAKMGSQVI-IPYRGDEYDPRHLKVMGDLGQVLFMKF------DLRDEDSI-RAVVKH 130 (391)
T ss_pred ceEEEEecccc--cccHHHHHHHhhcCCeEE-EeccCCccchhheeecccccceeeecc------CCCCHHHH-HHHHHh
Confidence 55556666655 689999999999985433 444434333333333333344333322 12334444 344555
Q ss_pred ccEEE-Eccccc------cCchhHHHHHHHHHHHHHcCCeEEEcCCCCCC-------CCCCHHHHHHHHHHhhhcCcEEE
Q 018696 155 GSIFH-YGSISL------IAEPCRSTQLAAMNLAKESGSILSYDPNLRLP-------LWPSEEAAREGIMSIWDQADIIK 220 (351)
Q Consensus 155 ~~~~~-~~~~~~------~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~-------~~~~~~~~~~~~~~~l~~~dvl~ 220 (351)
+.+++ +-+.-+ ..+.......++.+.+++.|+.-++-.+.-.. +..+.......+++.++.+.|+.
T Consensus 131 sNVVINLIGrd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lganv~s~Sr~LrsK~~gE~aVrdafPeAtIir 210 (391)
T KOG2865|consen 131 SNVVINLIGRDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGANVKSPSRMLRSKAAGEEAVRDAFPEATIIR 210 (391)
T ss_pred CcEEEEeeccccccCCcccccccchHHHHHHHHHHhhChhheeehhhccccccChHHHHHhhhhhHHHHHhhCCcceeec
Confidence 55542 111111 22334456677888888888776665432111 11122233455677788888888
Q ss_pred eCH
Q 018696 221 VSD 223 (351)
Q Consensus 221 ~N~ 223 (351)
+..
T Consensus 211 Pa~ 213 (391)
T KOG2865|consen 211 PAD 213 (391)
T ss_pred hhh
Confidence 753
No 179
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.64 E-value=1.3e+02 Score=30.02 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHcCCCeEEEe
Q 018696 60 PGGAPANVAVGISRLGGSSAFVG 82 (351)
Q Consensus 60 ~GG~~~n~a~~l~~lG~~v~~v~ 82 (351)
.|++|..+|+.+++.|.+|.++.
T Consensus 11 ~G~AGl~AAi~Aa~~G~~V~lie 33 (589)
T PRK08641 11 GGLAGLMATIKAAEAGVHVDLFS 33 (589)
T ss_pred chHHHHHHHHHHHHcCCcEEEEE
Confidence 57788899999999999999886
No 180
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.41 E-value=3.8e+02 Score=21.73 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHcCCeEEEc
Q 018696 172 STQLAAMNLAKESGSILSYD 191 (351)
Q Consensus 172 ~~~~~~~~~a~~~~~~v~~d 191 (351)
+....+++.+.+.+.++++=
T Consensus 35 dl~~~l~~~~~~~~~~ifll 54 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLL 54 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEE
Confidence 34445555555555555553
No 181
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.37 E-value=3.4e+02 Score=24.03 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=53.1
Q ss_pred EEeecCCChHHHHHHHHHHHCCCCCCCeee--cCCCCCeEEEEEEecCCCceEEEecCCcccccCCccccchhhhcCccE
Q 018696 80 FVGKLGDDEFGYMLANILKENNVDTSGVRY--DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSI 157 (351)
Q Consensus 80 ~v~~vG~D~~g~~i~~~l~~~gid~~~v~~--~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ 157 (351)
++|+.|. .|+.+...|.++.- ..+.+ ...+..+..+.+ +.+-+.+..+ |.....++-+..+.+.+..+|+
T Consensus 9 vlGaTGa--VGQrFi~lLsdhP~--f~ikvLgAS~RSAGK~ya~-a~~wkqt~~l---p~~~~e~~V~ec~~~~F~ecDI 80 (361)
T KOG4777|consen 9 VLGATGA--VGQRFISLLSDHPY--FSIKVLGASKRSAGKRYAF-AGNWKQTDLL---PESAHEYTVEECTADSFNECDI 80 (361)
T ss_pred eeeccch--hHHHHHHHhccCCc--ceeeeecccccccCCceEe-cccchhcccc---cchhhhhhHhhcChhhcccccE
Confidence 5666664 78889988887631 11222 233334444432 3333444332 5555556666677788999999
Q ss_pred EEEccccccCchhHHHHHHHHHHHHHcCCeEEEc
Q 018696 158 FHYGSISLIAEPCRSTQLAAMNLAKESGSILSYD 191 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d 191 (351)
+.++-- . +..-++-+.+.+.|..++-+
T Consensus 81 vfsgld---a----d~ageiek~f~eag~iiVsN 107 (361)
T KOG4777|consen 81 VFSGLD---A----DIAGEIEKLFAEAGTIIVSN 107 (361)
T ss_pred EEecCC---c----hhhhhhhHHHHhcCeEEEeC
Confidence 765421 1 22234445566666554444
No 182
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=20.37 E-value=3.5e+02 Score=19.73 Aligned_cols=61 Identities=5% Similarity=0.081 Sum_probs=33.8
Q ss_pred hcCccEEEEccccccCchhHHHHHHHHHHHHHcC---CeEEEcCCCCCCCCCCHHHHHHHHHHhhhcCcEEE
Q 018696 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG---SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 220 (351)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~ 220 (351)
.+++|++++.+..+......+.. ..+..+++.+ .++++---... ...+.+.+..+.+|+++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~-~~i~~l~~~~~~~~~ivv~GC~aq-------~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSR-NRIRKLKKLKKPGAKIVVTGCMAQ-------RYGEELKKEFPEVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHH-HHHHHHHHhcCCCCEEEEEeCccc-------cChHHHHhhCCCeEEEe
Confidence 35778887766555444333333 3444444433 66666542211 22456677778888875
No 183
>PRK03673 hypothetical protein; Provisional
Probab=20.07 E-value=3e+02 Score=26.01 Aligned_cols=49 Identities=18% Similarity=0.078 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHcCCCeEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCC
Q 018696 62 GAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST 112 (351)
Q Consensus 62 G~~~n~a~~l~~lG~~v~~v~~vG~D~~g~~i~~~l~~~gid~~~v~~~~~ 112 (351)
.++...+..|..+|.++...+.+++| .+.|.+.+++..-..+.+....+
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~--~~~i~~~l~~a~~~~DlVI~tGG 69 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDN--LDALVAILRERSQHADVLIVNGG 69 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCC--HHHHHHHHHHHhccCCEEEEcCC
Confidence 36778889999999999999999998 34567777765434454544444
Done!