BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018697
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
L W+S L+S D+ + LW ++ K ++ ++ +G + AW H+
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
+ + + WD RS K + + AH V+ ++ + +L T + + + LWD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
LR LK + H + V +P + + S+GTD +N+W +S ++ E E
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSAE 359
Query: 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
LL + + + +W+ EPW+ S+S D
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 21/140 (15%)
Query: 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA---------PIQELPGHTHWTWAVCCN 261
V Y + H++ T S + ++D A P L GH + + N
Sbjct: 129 VNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWN 188
Query: 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321
G +LSA D TV LW ++ P E + A ++ +S V +A
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAG-----PKEGKIVD----AKAIFTGHSAV---VEDVA 236
Query: 322 WSSREPWIFASLSYDGRVVV 341
W +F S++ D ++ +
Sbjct: 237 WHLLHESLFGSVADDQKLXI 256
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
L W+S L+S D+ + LW ++ K ++ ++ +G + AW H+
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
+ + + WD RS K + + AH V+ ++ + +L T + + + LWD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
LR LK + H + V +P + + S+GTD +N+W +S ++ E E
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSAE 359
Query: 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
LL + + + +W+ EPW+ S+S D
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 21/140 (15%)
Query: 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA---------PIQELPGHTHWTWAVCCN 261
V Y + H++ T S + ++D A P L GH + + N
Sbjct: 129 VNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWN 188
Query: 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321
G +LSA D TV LW ++ P E + A ++ +S V +A
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAG-----PKEGKIVD----AKAIFTGHSAV---VEDVA 236
Query: 322 WSSREPWIFASLSYDGRVVV 341
W +F S++ D ++++
Sbjct: 237 WHLLHESLFGSVADDQKLMI 256
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 15/214 (7%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
L + D+ I LW + K +V ++ +G + +W H+ + + +
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 194 FWDLRSMGKTNSIEH------AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247
WD RS T+ H A V + ++ + +L T + + + LWDLR LK +
Sbjct: 254 IWDTRS-NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
H + V +P + + S+GTD +N+W +S ++ P ++ P LL
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP-----ELL 367
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
+ + + +W+ EPW+ S+S D + V
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQV 401
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA 303
P L GH + + NP G +LSA D T+ LW +S +P E V A
Sbjct: 169 PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA-----VPKEGKVVD----A 219
Query: 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
++ ++ V ++W +F S++ D ++++
Sbjct: 220 KTIFTGHTAV---VEDVSWHLLHESLFGSVADDQKLMI 254
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 13/213 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
L + D+ I LW ++ + K +V ++ +G + AW H+ + + +
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
WD R+ K + AH V+ ++ + +L T + + + LWDLR LK +
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
H + V +P + + S+GTD +++W +S ++ E E LL
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 376
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
+ + + +W+ EPWI S+S D + V
Sbjct: 377 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 409
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA 303
P L GH + + NP +G++LSA D T+ LW ++ + P E R
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT-----PKE-------HRV 224
Query: 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
N ++ + V +AW +F S++ D ++++
Sbjct: 225 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 262
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 13/213 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
L + D+ I LW ++ + K +V ++ +G + AW H+ + + +
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
WD R+ K + AH V+ ++ + +L T + + + LWDLR LK +
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
H + V +P + + S+GTD +++W +S ++ E E LL
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 374
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
+ + + +W+ EPWI S+S D + V
Sbjct: 375 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 407
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA 303
P L GH + + NP +G++LSA D T+ LW ++ + P E R
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT-----PKE-------HRV 222
Query: 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
N ++ + V +AW +F S++ D ++++
Sbjct: 223 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 260
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 13/213 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
L + D+ I LW ++ + K +V ++ +G + AW H+ + + +
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
WD R+ K + AH V+ ++ + +L T + + + LWDLR LK +
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
H + V +P + + S+GTD +++W +S ++ E E LL
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 372
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
+ + + +W+ EPWI S+S D + V
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA 303
P L GH + + NP +G++LSA D T+ LW ++ + P E R
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT-----PKE-------HRV 220
Query: 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
N ++ + V +AW +F S++ D ++++
Sbjct: 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
WSSG + L + +++LWS + +Q +Q Y+S AW T
Sbjct: 113 WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 167
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
+ VQ WD++ + ++ +H V + ++L + + IH D+R+ + + L
Sbjct: 168 SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
GH+ + P DG + S G D+ VN+W PS +P + L
Sbjct: 227 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 269
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
+++ ++ +V +AW PW L+ G
Sbjct: 270 QTFTQHQGAVKAVAWC---PWQSNVLATGG 296
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
WSSG + L + +++LWS + +Q +Q Y+S AW T
Sbjct: 33 WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 87
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
+ VQ WD++ + ++ +H V + ++L + + IH D+R+ + + L
Sbjct: 88 SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
GH+ + P DG + S G D+ VN+W PS +P + L
Sbjct: 147 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 189
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
+++ ++ +V +AW PW L+ G
Sbjct: 190 QTFTQHQGAVKAVAWC---PWQSNVLATGG 216
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
WSSG + L + +++LWS + +Q +Q Y+S AW T
Sbjct: 124 WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 178
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
+ VQ WD++ + ++ +H V + ++L + + IH D+R+ + + L
Sbjct: 179 SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
GH+ + P DG + S G D+ VN+W PS +P + L
Sbjct: 238 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 280
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
+++ ++ +V +AW PW L+ G
Sbjct: 281 QTFTQHQGAVKAVAWC---PWQSNVLATGG 307
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)
Query: 57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116
+ + L H + +W ++ P Q T+ S + +W GQL + L
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQ----TIASASDDKTVKLW---NRNGQL-------LQTL 217
Query: 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176
H + V + G+ S D++ + LW N+N Q+ + +G ++G A+
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASAS-DDKTVKLW-----NRNGQLL-QTLTGHSSSVNGVAF 270
Query: 177 DPHDVNAVAATCESSVQFWDLRS-MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHL 235
P +A+ + +V+ W+ + +T + + V V + + + +A+D+ + L
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKL 329
Query: 236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295
W+ +Q L GH+ W V +P+ I SA D TV LW
Sbjct: 330 WNRN--GQHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW--------------- 371
Query: 296 VESPNQRANSLLNSYSDYEDSVYGLAWS 323
R LL + + + SV G+A+S
Sbjct: 372 -----NRNGQLLQTLTGHSSSVRGVAFS 394
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 32/209 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175
L+AH + V + G+ S D++ + LW N+N Q+ + +G + G A
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASAS-DDKTVKLW-----NRNGQLL-QTLTGHSSSVWGVA 64
Query: 176 WDPHDVNAVAATCESSVQFWDLRS-MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIH 234
+ P +A+ + +V+ W+ + +T + + VR V + + + +A+D+ +
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVK 123
Query: 235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294
LW+ +Q L GH+ W V +P+ I SA D TV LW
Sbjct: 124 LWNRN--GQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW-------------- 166
Query: 295 LVESPNQRANSLLNSYSDYEDSVYGLAWS 323
R LL + + + SV+G+A+S
Sbjct: 167 ------NRNGQLLQTLTGHSSSVWGVAFS 189
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 31/184 (16%)
Query: 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS- 199
D++ + LW N+N Q + +G + G A+ P +A+ + +V+ W+
Sbjct: 323 DDKTVKLW-----NRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 376
Query: 200 MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259
+ +T + + VR V + + + +A+D+ + LW+ +Q L GH+ W V
Sbjct: 377 LLQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVA 433
Query: 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319
+P+ D I SA D TV LW R LL + + + SV G
Sbjct: 434 FSPD-DQTIASASDDKTVKLW--------------------NRNGQLLQTLTGHSSSVRG 472
Query: 320 LAWS 323
+A+S
Sbjct: 473 VAFS 476
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS- 199
D++ + LW N+N Q+ + +G + G A+ P +A+ + +V+ W+
Sbjct: 446 DDKTVKLW-----NRNGQLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 499
Query: 200 MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259
+ +T + + VR V + + + +A+D+ + LW+ +Q L GH+ W V
Sbjct: 500 LLQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVA 556
Query: 260 CNPEYDGFILSAGTDSTVNLW 280
+P+ I SA +D TV LW
Sbjct: 557 FSPDGQ-TIASASSDKTVKLW 576
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 24/224 (10%)
Query: 57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116
+ + L H + +W ++ P Q T+ S + +W GQL + L
Sbjct: 131 LLQTLTGHSSSVWGVAFSPDGQ----TIASASDDKTVKLW---NRNGQL-------LQTL 176
Query: 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176
H + V + G+ S D++ + LW N+N Q+ + +G + G A+
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASAS-DDKTVKLW-----NRNGQLL-QTLTGHSSSVRGVAF 229
Query: 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLW 236
P +A+ + +V+ W+ H+ N + +A+D+ + LW
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
+ +Q L GH+ W V +P+ I SA D TV LW
Sbjct: 290 NRN--GQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW 330
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS- 199
D++ + LW N+N Q+ + +G + G A+ P +A+ + +V+ W+
Sbjct: 77 DDKTVKLW-----NRNGQLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130
Query: 200 MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259
+ +T + + V V + + + +A+D+ + LW+ +Q L GH+ W V
Sbjct: 131 LLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVA 187
Query: 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319
+P+ I SA D TV LW R LL + + + SV G
Sbjct: 188 FSPDGQ-TIASASDDKTVKLW--------------------NRNGQLLQTLTGHSSSVRG 226
Query: 320 LAWS 323
+A+S
Sbjct: 227 VAFS 230
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 43/269 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGG 174
L+ H G + L S+G+ + L+S + + W L ++ V + G H +
Sbjct: 13 LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES 231
A++A+ + +++ WD+ + G+T H V +VD D KK ++++ + +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDK 129
Query: 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS--- 283
I +W ++ + L GH W V P I+SAG D V W ++
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 284 --------TSNHDEL---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSS 324
SN + L P +L+ S + +L + + +D V+ LA+S
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 325 REPWIFAS-------LSYDGRVVVESVKP 346
W+ A+ S D + +V+ ++P
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 130 SSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
S+G+ + L+S + + W L ++ V + G H + A++A+
Sbjct: 20 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 79
Query: 189 ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245
+ +++ WD+ + G+T H V +VD D KK ++++ + + I +W ++ +
Sbjct: 80 DKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK--GQCL 135
Query: 246 QELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS-----------TSNHDE 289
L GH W V P I+SAG D V W ++ SN +
Sbjct: 136 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 195
Query: 290 L---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSSREPWIFAS------ 332
L P +L+ S + +L + + +D V+ LA+S W+ A+
Sbjct: 196 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK 255
Query: 333 -LSYDGRVVVESVKP 346
S D + +V+ ++P
Sbjct: 256 VFSLDPQYLVDDLRP 270
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 43/269 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGG 174
L+ H G + L S+G+ + L+S + + W L ++ V + G H +
Sbjct: 13 LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES 231
A++A+ + +++ WD+ + G+T H V +VD D KK ++++ + +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDK 129
Query: 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS--- 283
I +W ++ + L GH W V P I+SAG D V W ++
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 284 --------TSNHDEL---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSS 324
SN + L P +L+ S + +L + + +D V+ LA+S
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 325 REPWIFAS-------LSYDGRVVVESVKP 346
W+ A+ S D + +V+ ++P
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 43/269 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGG 174
L+ H G + L S+G+ + L+S + + W L ++ V + G H +
Sbjct: 13 LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES 231
A++A+ + +++ WD+ + G+T H V +VD D KK ++++ + +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDK 129
Query: 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS--- 283
I +W ++ + L GH W V P I+SAG D V W ++
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 284 --------TSNHDEL---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSS 324
SN + L P +L+ S + +L + + +D V+ LA+S
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 325 REPWIFAS-------LSYDGRVVVESVKP 346
W+ A+ S D + +V+ ++P
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 130 SSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
S+G+ + L+S + + W L ++ V + G H + A++A+
Sbjct: 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 189 ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245
+ +++ WD+ + G+T H V +VD D KK ++++ + + I +W ++ +
Sbjct: 86 DKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK--GQCL 141
Query: 246 QELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS-----------TSNHDE 289
L GH W V P I+SAG D V W ++ SN +
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 290 L---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSSREPWIFAS------ 332
L P +L+ S + +L + + +D V+ LA+S W+ A+
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK 261
Query: 333 -LSYDGRVVVESVKP 346
S D + +V+ ++P
Sbjct: 262 VFSLDPQYLVDDLRP 276
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
E++ +AH I + + + L D+ + LW+ + N + G H+
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE----NNWALEQTFEGHEHF 142
Query: 171 LSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKKKHLLV 225
+ A++P D + A+ C + +V+ W L ++ R V+Y K ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284
TA+D+ I +WD + K+ + L GH +P I+S D T+ +W ST
Sbjct: 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
E++ +AH I + + + L D+ + LW+ + N + G H+
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE----NNWALEQTFEGHEHF 142
Query: 171 LSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKKKHLLV 225
+ A++P D + A+ C + +V+ W L ++ R V+Y K ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284
TA+D+ I +WD + K+ + L GH +P I+S D T+ +W ST
Sbjct: 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKK 220
G H++ A++P D + A+ C + +V+ W L ++ R V+Y
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
K ++TA+D+ I +WD + K+ + L GH +P I+S D T+ +W
Sbjct: 198 KPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 281 LVSTSNHDELPSESLVES------PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS 334
ST ++ + L S P R N + S +++ L+ + EP + SL
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA---SGFDNGFTVLSLGNDEPTL--SLD 310
Query: 335 YDGRVV 340
G++V
Sbjct: 311 PVGKLV 316
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 210 HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269
++R++ K ++L + +D+ + LW+ A Q GH H+ V NP+
Sbjct: 99 YIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157
Query: 270 SAGTDSTVNLWLVSTS 285
S D TV +W + S
Sbjct: 158 SGCLDRTVKVWSLGQS 173
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
++S+ D V G+ + EPW+ +L Y GRV +
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVEI 39
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKK 220
G H++ A++P D + A+ C + +V+ W L ++ R V+Y
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
K ++TA+D+ I +WD + K+ + L GH +P I+S D T+ +W
Sbjct: 198 KPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 281 LVSTSNHDELPSESLVES------PNQRANSLLNSYSD 312
ST ++ + L S P R N + + + +
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 210 HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269
++R++ K ++L + +D+ + LW+ A Q GH H+ V NP+
Sbjct: 99 YIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157
Query: 270 SAGTDSTVNLWLVSTS 285
S D TV +W + S
Sbjct: 158 SGCLDRTVKVWSLGQS 173
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 26/164 (15%)
Query: 176 WDPHDVNA-VAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDT--------KKKHLLVT 226
W PHD +++ + +++ WD TN+++ A V N + KH LV
Sbjct: 107 WYPHDTGMFTSSSFDKTLKVWD------TNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160
Query: 227 AADES-GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW----- 280
+ L DL+ L GH AV +P YD + +A DS V LW
Sbjct: 161 VGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219
Query: 281 ---LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321
L++ H+ S++ VES N N +N D ++ L
Sbjct: 220 SGCLITLDQHNGKKSQA-VESANTAHNGKVNGLCFTSDGLHLLT 262
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV---RNVDYDTKKKHLLVTAADESGIHL 235
H+ V+ + +++++ WD+ + G+ + HV R V YD ++ +V+ A + + +
Sbjct: 208 HEKRVVSGSRDATLRVWDIET-GQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKV 263
Query: 236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGF-ILSAGTDSTVNLWLVSTSN--HDELPS 292
WD + + L GHT+ +++ ++DG ++S D+++ +W V T N H
Sbjct: 264 WDPET-ETCLHTLQGHTNRVYSL----QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 293 ESLVESPNQRANSLLNSYSD 312
+SL + N L++ +D
Sbjct: 319 QSLTSGMELKDNILVSGNAD 338
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
++ V+ + ++S++ WD+ + +++ H K ++LV+ +S + +WD++
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348
Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284
+ +Q L G AV C F++++ D TV LW + T
Sbjct: 349 GQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283
+V+ +D++ + +W K ++ L GHT W+ + D I+S TD T+ +W
Sbjct: 132 IVSGSDDNTLKVWSAVTGKC-LRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKVWNAE 187
Query: 284 TSN--HDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS------Y 335
T H S V + +++ D V+ + + ++ Y
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 336 DGRVVVESVKPFLSR 350
DGR VV F+ +
Sbjct: 248 DGRRVVSGAYDFMVK 262
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 192 VQFWDLRSMGKTNSI------EHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245
++ WD R G S + + VD ++H++ T + + +WD+R P+
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS 305
L H W V +P + + D ++ W ST ++P +S + R+++
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAST----DVPEKSSLFHQGGRSST 329
Query: 306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346
L+ + +V+ SS W+ + D R+ + S+ P
Sbjct: 330 FLSHSISNQANVHQSVISS---WLSTDPAKD-RIEITSLLP 366
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 111/269 (41%), Gaps = 43/269 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGG 174
L+ H G + L S+G+ + L+S + + W L ++ V + G H +
Sbjct: 13 LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES 231
A++A+ + +++ WD+ + G+T H V +VD D KK +++ + +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVXSVDID-KKASXIISGSRDK 129
Query: 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS--- 283
I +W ++ + L GH W V P I+SAG D V W ++
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 284 --------TSNHDEL---PSESLVESPNQRAN----SLLNSYSDY----EDSVYGLAWSS 324
SN + L P +L+ S + +L + Y +D V+ LA+S
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSP 247
Query: 325 REPWIFAS-------LSYDGRVVVESVKP 346
W+ A+ S D + +V+ ++P
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 138
Query: 282 VST 284
V T
Sbjct: 139 VKT 141
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 203 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ L+
Sbjct: 262 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLY 311
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP 120
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 138
Query: 282 VST 284
V T
Sbjct: 139 VKT 141
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 203 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ L+
Sbjct: 262 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLF 311
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP 120
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 159
Query: 282 VST 284
V T
Sbjct: 160 VKT 162
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 224 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 282
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 283 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 332
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 140
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTV 277
+ +L+V+ + + + +WD++ K ++ LP H+ AV N DG I+S+ D
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN--RDGSLIVSSSYDGLC 197
Query: 278 NLW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 157
Query: 282 VST 284
V T
Sbjct: 158 VKT 160
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 222 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 281 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 330
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 138
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTV 277
+ +L+V+ + + + +WD++ K ++ LP H+ AV N DG I+S+ D
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN--RDGSLIVSSSYDGLC 195
Query: 278 NLW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 203 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 262 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 138
Query: 282 VST 284
V T
Sbjct: 139 VKT 141
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP 120
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 203 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 262 NMVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 138
Query: 282 VST 284
V T
Sbjct: 139 VKT 141
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 119
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ ++ LP H+ AV N + I+S+ D
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 152
Query: 282 VST 284
V T
Sbjct: 153 VKT 155
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 217 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 276 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 325
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 133
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 191
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 141
Query: 282 VST 284
V T
Sbjct: 142 VKT 144
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 206 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 265 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 122
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 180
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 136
Query: 282 VST 284
V T
Sbjct: 137 VKT 139
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 201 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 260 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 309
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 117
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 175
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 140
Query: 282 VST 284
V T
Sbjct: 141 VKT 143
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 205 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 264 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 313
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 121
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 179
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 141
Query: 282 VST 284
V T
Sbjct: 142 VKT 144
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 206 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 265 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 122
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 180
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 141
Query: 282 VST 284
V T
Sbjct: 142 VKT 144
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 206 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 265 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP 123
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 124 -QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 180
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 135
Query: 282 VST 284
V T
Sbjct: 136 VKT 138
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 200 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 259 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 308
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 116
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 174
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 135
Query: 282 VST 284
V T
Sbjct: 136 VKT 138
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 200 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 259 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 308
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP 117
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 118 -QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 174
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 138
Query: 282 VST 284
V T
Sbjct: 139 VKT 141
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT ++ ++ WD S GK H ++ +V+ +++
Sbjct: 203 FSPNGKYILAATLDNDLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 262 NMVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 119
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ ++ LP H+ AV N + I+S+ D
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 134
Query: 282 VST 284
V T
Sbjct: 135 VKT 137
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADE 230
+ P+ +AAT +++++ WD S GK H ++ +V+ +++
Sbjct: 199 FSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+ +++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 258 NLVYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 307
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFN- 115
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 173
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
+LLV+A+D+ + +WD+ K ++ L GH+++ + NP+ + I+S D +V +W
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 131
Query: 282 VST 284
V T
Sbjct: 132 VKT 134
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRN-----VDYDTKKKHLLVTAADESG 232
P+ +AAT +++++ WD S GK H ++ +V+ ++++
Sbjct: 198 PNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 256
Query: 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLW 280
+++W+L+ K +Q+L GHT + C+P + I SA D T+ LW
Sbjct: 257 VYIWNLQT-KEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 304
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV---DYDT 218
K SG +S AW V+A+ + +++ WD+ S GK H V +++
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP 113
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
+ +L+V+ + + + +WD++ K ++ LP H+ AV N + I+S+ D
Sbjct: 114 -QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 170
Query: 279 LW------LVSTSNHDELPSESLVE-SPNQR 302
+W + T D+ P S V+ SPN +
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 40/255 (15%)
Query: 110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN--IFLWSLD-CSNKNAQ---VQSKQ 163
+ +A H + V + + + D +++ N IF+W ++ C+ + + Q
Sbjct: 103 INSMARFSNHSSSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160
Query: 164 SSGMLHYLSGGAWDPHDVNAVAATCESS-VQFWDLR--------SMGKTNSIEHAHVRNV 214
S + + AW+ + A+ S+ WDL+ S NS + V
Sbjct: 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220
Query: 215 DYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILS 270
++ K + TA ++ I +WDLR P+Q L GH ++ + + +LS
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280
Query: 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF 330
+G D+TV LW N + L+ + + + ++ P +F
Sbjct: 281 SGRDNTVLLW-------------------NPESAEQLSQFPARGNWCFKTKFAPEAPDLF 321
Query: 331 ASLSYDGRVVVESVK 345
A S+D ++ V++++
Sbjct: 322 ACASFDNKIEVQTLQ 336
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS-VQFWDLRSM 200
E N+++W+ D + +A ++ +S+ Y++ W HD + ++ + V +D+ S
Sbjct: 112 ERNVYVWNADSGSVSALAETDEST----YVASVKWS-HDGSFLSVGLGNGLVDIYDVESQ 166
Query: 201 GKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC 260
K ++ H V + +H+L + + IH D+R+ I L GH+ VC
Sbjct: 167 TKLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS---EVCG 222
Query: 261 NP-EYDGFIL-SAGTDSTVNLW 280
DG L S G D+ V +W
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIW 244
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171
++ + H ++ C+ W RH ++S + + D N Q+ + Q G +
Sbjct: 168 KLRTMAGHQARVGCLSW---NRH--VLSSGSRSGAIHHHDVRIANHQIGTLQ--GHSSEV 220
Query: 172 SGGAWDPHDVNAVAATCESSVQFWDLRS----MGKTNSIEHAHVRNVDYDTKKKHLLVTA 227
G AW + + ++ VQ WD RS KTN +A V+ V + + +LL T
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAWCPWQSNLLATG 278
Query: 228 AD--ESGIHLWD 237
+ IH W+
Sbjct: 279 GGTMDKQIHFWN 290
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG 201
++ I +W L N + + G H++S A++ + + +++ WDL + G
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL-TTG 118
Query: 202 KTNSIEHAHVRN---VDYDTKKKHLLVTAADESGIHLWD-LRMLKAPIQELPGHTHWTWA 257
T H ++ V + + + ++ + D++ I LW+ L + K +Q+ H+ W
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT-IKLWNTLGVCKYTVQD-ESHSEWVSC 176
Query: 258 VCCNPE-YDGFILSAGTDSTVNLW 280
V +P + I+S G D V +W
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVW 200
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVSTSNHDELPSESL 295
L GH W + P++ ILSA D T+ +W L + +P +L
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL 82
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG 201
++ I +W L N + + G H++S A++ + + +++ WDL + G
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL-TTG 95
Query: 202 KTNSIEHAHVRN---VDYDTKKKHLLVTAADESGIHLWD-LRMLKAPIQELPGHTHWTWA 257
T H ++ V + + + ++ + D++ I LW+ L + K +Q+ H+ W
Sbjct: 96 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT-IKLWNTLGVCKYTVQD-ESHSEWVSC 153
Query: 258 VCCNPE-YDGFILSAGTDSTVNLW 280
V +P + I+S G D V +W
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVW 177
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVSTSNHDELPSESL 295
L GH W + P++ ILSA D T+ +W L + +P +L
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL 59
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 28/182 (15%)
Query: 106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165
N+ + +RI L H G + C+ + DE I S D + + V + +
Sbjct: 161 NTLECKRI--LTGHTGSVLCLQY------------DERVIITGSSDSTVRVWDVNTGEML 206
Query: 166 GMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRS-----MGKTNSIEHAHVRNVDYDT 218
L + N + TC + S+ WD+ S + + A V VD+D
Sbjct: 207 NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 266
Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278
K +V+A+ + I +W+ + ++ L GH + C D ++S +D+T+
Sbjct: 267 K---YIVSASGDRTIKVWNTSTCEF-VRTLNGHKR---GIACLQYRDRLVVSGSSDNTIR 319
Query: 279 LW 280
LW
Sbjct: 320 LW 321
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 204 NSIEHAHVRN--------VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT 255
+S++ H R+ + YD +K +V+ ++ I +WD L+ + L GHT
Sbjct: 121 HSLQRIHCRSETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLECK-RILTGHTG-- 174
Query: 256 WAVCCNPEYDGFILSAGTDSTVNLWLVST 284
+V C + I++ +DSTV +W V+T
Sbjct: 175 -SVLCLQYDERVIITGSSDSTVRVWDVNT 202
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAA 228
H + D D V+A+ + +++ W+ + ++ + H R + + L+V+ +
Sbjct: 255 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQYRDRLVVSGS 313
Query: 229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288
++ I LWD+ A ++ L GH V C + I+S D + +W + +
Sbjct: 314 SDNTIRLWDIE-CGACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 369
Query: 289 ELPSESL 295
P+ +L
Sbjct: 370 RAPAGTL 376
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG 201
+++I LW L +K V ++ +G H++ A++ + + ++ WDL +
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV 463
Query: 202 KTNS-IEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD-LRMLKAPIQE-LPGHTHWTWA 257
T + H V +V + + +V+A+ + I LW+ L K I E GH W
Sbjct: 464 STRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522
Query: 258 VCCNPE-YDGFILSAGTDSTVNLWLVS 283
V +P I+SA D TV +W +S
Sbjct: 523 VRFSPNTLQPTIVSASWDKTVKVWNLS 549
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 34/162 (20%)
Query: 200 MGKTNSIEH---------AHVRNVDYDTKKKHLLVTAADESGIHLWDLR------MLKAP 244
+GKT ++ A V ++ + +++ + +++ + +W++ L+ P
Sbjct: 64 LGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP 123
Query: 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304
+ L GHT V +P +LSAG D+ + +W V T A
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTG-----------------AA 166
Query: 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV-VVESVK 345
L + D++Y + W SR+ + + D RV V+E K
Sbjct: 167 VLTLGPDVHPDTIYSVDW-SRDGALICTSCRDKRVRVIEPRK 207
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI 123
H + D++ P + + + S E +W+IP+ G L P E + L+ H ++
Sbjct: 80 HTAPVLDIAWXPHNDNVIA---SGSEDCTVMVWEIPD--GGLVLPLREPVITLEGHTKRV 134
Query: 124 NCVLWWSSGRHDKLVSIDEENIFLWSL 150
V W + ++ L + + I +W +
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA 115
L+C H + D++ CP + + + S E +W+IP+ G L P E +
Sbjct: 76 LVC----GHTAPVLDIAWCPHNDNVIA---SGSEDCTVMVWEIPD--GGLVLPLREPVIT 126
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSL 150
L+ H ++ V W + ++ L + + I +W +
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 35/179 (19%)
Query: 184 VAATCESSVQ-FWDLRSMGKTNSIEH---------AHVRNVDYDTKKKHLLVTAADESGI 233
+A CE+S + + +GKT ++ A V ++ + +++ + +++ +
Sbjct: 47 MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV 106
Query: 234 HLWDLR------MLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH 287
+W++ L+ P+ L GHT V +P +LSAG D+ + +W V T
Sbjct: 107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-- 164
Query: 288 DELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV-VVESVK 345
A L + D++Y + W SR+ + + D RV V+E K
Sbjct: 165 ---------------AAVLTLGPDVHPDTIYSVDW-SRDGALICTSCRDKRVRVIEPRK 207
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++Q +
Sbjct: 43 QFERIRTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIQQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLLI---DQQGYIKVADFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 154 NKNAQVQSKQSSGMLH--YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV 211
+KN + +K+ S +H YLS ++ D+ + A+ + + WD+ S G+ H H
Sbjct: 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHGHG 196
Query: 212 RNV----DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGF 267
+V ++ + V+ + +WD+R + +Q H +V P D F
Sbjct: 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAF 255
Query: 268 ILSAGTDSTVNLWLVSTSNHDELPS-ESLVESPNQ-----RANSLLNSYSDYEDSVYGLA 321
S D+T L+ + + S ES++ + L Y+DY +V+ +
Sbjct: 256 A-SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314
Query: 322 WSSREPWIFASLSYDGRVVVESVKP 346
SR +F ++ RV V P
Sbjct: 315 KGSRVSILFG---HENRVSTLRVSP 336
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 33/164 (20%)
Query: 134 HDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCES 190
H V++ + +I LW+ +K ++ + G ++G ++P + N A++ E
Sbjct: 132 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG---SITGLKFNPLNTNQFYASSMEG 188
Query: 191 SVQFWD-----LRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADE---------SGIHLW 236
+ + D LR +++I ++ D +V D G LW
Sbjct: 189 TTRLQDFKGNILRVFASSDTI---NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW 245
Query: 237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
+LRM K + TH CC D F+ +A D TV +W
Sbjct: 246 NLRMHKKKV------THVALNPCC----DWFLATASVDQTVKIW 279
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 186 ATC--ESSVQFWDLRSMGKTNSIEHAHVRNVD---YDTKKKHLLV-TAADESGIHLWDLR 239
ATC + V+ WD + GK H V+ + K HLL+ T +++ + LWDL
Sbjct: 680 ATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 240 MLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286
K + GHT+ +P+ D + S D T+ LW V ++N
Sbjct: 739 Q-KECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSAN 783
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 186 ATC--ESSVQFWDLRSMGKTNSIEHAHVRNVD---YDTKKKHLLV-TAADESGIHLWDLR 239
ATC + V+ WD + GK H V+ + K HLL+ T +++ + LWDL
Sbjct: 673 ATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 240 MLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286
K + GHT+ +P+ D + S D T+ LW V ++N
Sbjct: 732 Q-KECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSAN 776
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 33/164 (20%)
Query: 134 HDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCES 190
H V++ + +I LW+ +K ++ + G ++G ++P + N A++ E
Sbjct: 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG---SITGLKFNPLNTNQFYASSMEG 187
Query: 191 SVQFWD-----LRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADE---------SGIHLW 236
+ + D LR +++I ++ D +V D G LW
Sbjct: 188 TTRLQDFKGNILRVFASSDTI---NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW 244
Query: 237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
+LRM K + TH CC D F+ +A D TV +W
Sbjct: 245 NLRMHKKKV------THVALNPCC----DWFLATASVDQTVKIW 278
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 33/164 (20%)
Query: 134 HDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCES 190
H V++ + +I LW+ +K ++ + G ++G ++P + N A++ E
Sbjct: 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG---SITGLKFNPLNTNQFYASSMEG 187
Query: 191 SVQFWD-----LRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADE---------SGIHLW 236
+ + D LR +++I ++ D +V D G LW
Sbjct: 188 TTRLQDFKGNILRVFASSDTI---NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW 244
Query: 237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
+LRM K + TH CC D F+ +A D TV +W
Sbjct: 245 NLRMHKKKV------THVALNPCC----DWFLATASVDQTVKIW 278
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 131 SGRHDKLVSIDEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
SG DK V I W L +N + K +G H++S A + A++++
Sbjct: 44 SGSRDKTVMI-------WKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96
Query: 189 ESSVQFWDLRSMGKTNSI--EHAHVRNVDYDTKKKHLLVTAADESGIHLWD-LRMLKAPI 245
+ +++ WDLR+ + V +V + + +L +A E I LW+ L K
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSS 155
Query: 246 QELPGHTHWTWAVCCNP---------EYDGFILSAGTDSTVNLW 280
E H+ W V +P + + S G D + +W
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WTLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 28 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 87
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 88 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 147
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 148 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WTLCGTPEYLAPEIIL 197
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 198 SKGYNKAVDWW 208
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q +RI L G++ V SG H + +D++ + L ++ + ++ +
Sbjct: 29 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 88
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 89 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 148
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ DE G I + D K + G T W +C PEY IL
Sbjct: 149 LIYRDLKPENLLI---DEQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 198
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 199 SKGYNKAVDWW 209
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D + K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLMI---DQQGYIQVTDFGLAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEY--DGFILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPAIILSKGYNKAVDWW 222
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 63 QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 122
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 123 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 182
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 183 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 232
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 233 SKGYNKAVDWW 243
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D + K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLMI---DQQGYIKVTDFGLAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 35 QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 94
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 95 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 154
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 155 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 204
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 205 SKGYNKAVDWW 215
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLMI---DQQGYIKVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLMI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLMI---DQQGYIKVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
++T AD+ I ++D + K + +L GH WA+ + G ++S TD TV +W
Sbjct: 135 VITGADDKXIRVYD-SINKKFLLQLSGHDGGVWAL--KYAHGGILVSGSTDRTVRVW 188
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLMI---DQQGYIKVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + E+ H +
Sbjct: 103 FLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLMI---DQQGYIKVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 35 QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 94
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + E+ H +
Sbjct: 95 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLD 154
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 155 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 204
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 205 SKGYNKAVDWW 215
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 31 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 88
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 89 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 148
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 149 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 198
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 199 LCGTPEYLAPEIILSKGYNKAVDWW 223
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
++T AD+ I ++D + K + +L GH WA+ + G ++S TD TV +W
Sbjct: 135 VITGADDKMIRVYD-SINKKFLLQLSGHDGGVWAL--KYAHGGILVSGSTDRTVRVW 188
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
L GH H+ ++CC +Y +LSAG D + W
Sbjct: 237 LFGHKHFVSSICCGKDY--LLLSAGGDDKIFAW 267
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI + G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLLI---DQQGYIKVADFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 48/213 (22%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENI-------- 145
W+ P + QL+ Q +RI L G++ V SG H + +D++ +
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 146 --------------FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS 191
FL L+ S K+ + ++ Y++GG H + + E
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKD----NSNLYMVMEYVAGGEMFSH-LRRIGRFAEPH 142
Query: 192 VQFWDLRSMGKTNSIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELP 249
+F+ + + + E+ H ++ Y D K ++LL+ D+ G I + D K +
Sbjct: 143 ARFYAAQIVL---TFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVK 192
Query: 250 GHTHWTWAVCCNPEYDG--FILSAGTDSTVNLW 280
G T W +C PEY ILS G + V+ W
Sbjct: 193 GRT---WXLCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 51 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 108
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+
Sbjct: 109 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYA 168
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 169 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 218
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 219 LCGTPEYLAPEIILSKGYNKAVDWW 243
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 42 QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + E+ H +
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLD 161
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D K + G T W +C PEY IL
Sbjct: 162 LIYRDLKPENLMI---DQQGYIKVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 211
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 212 SKGYNKAVDWW 222
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q ERI L G++ V +G H + +D++ + L ++ + ++ +
Sbjct: 43 QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + + E+ H +
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 162
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++L++ D+ G I + D K + G T W +C PEY IL
Sbjct: 163 LIYRDLKPENLMI---DQQGYIKVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 212
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 213 SKGYNKAVDWW 223
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 30 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+
Sbjct: 88 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYA 147
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 148 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WX 197
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 198 LCGTPEYLAPEIILSKGYNKAVDWW 222
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 29/191 (15%)
Query: 109 QLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDCSNKNAQVQSKQSSG 166
Q +RI L G++ V SG H + +D++ + L ++ + ++ +
Sbjct: 37 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 96
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------------SIEHAHVRN 213
L L D ++ V F LR +G+ + E+ H +
Sbjct: 97 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLHSLD 156
Query: 214 VDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG--FIL 269
+ Y D K ++LL+ D+ G I + D K + G T W +C PEY IL
Sbjct: 157 LIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGRT---WXLCGTPEYLAPEIIL 206
Query: 270 SAGTDSTVNLW 280
S G + V+ W
Sbjct: 207 SKGYNKAVDWW 217
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 32/205 (15%)
Query: 96 WQIP-ELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIF-LWSLDC 152
W+ P + QL+ Q +RI L G++ V SG H + +D++ + L ++
Sbjct: 51 WETPSQNTAQLD--QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 108
Query: 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-------- 204
+ ++ + L L D ++ V F LR +G+ +
Sbjct: 109 TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYA 168
Query: 205 -----SIEHAHVRNVDY-DTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWA 257
+ E+ H ++ Y D K ++LL+ D+ G I + D K + G T W
Sbjct: 169 AQIVLTFEYLHSLDLIYRDLKPENLLI---DQQGYIQVTDFGFAK----RVKGAT---WT 218
Query: 258 VCCNPEYDG--FILSAGTDSTVNLW 280
+C PEY ILS G + V+ W
Sbjct: 219 LCGTPEYLAPEIILSKGYNKAVDWW 243
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 109/292 (37%), Gaps = 60/292 (20%)
Query: 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148
++G +IW + G N A + G + V W S LV+ D + LW
Sbjct: 66 RTWGGSIWVFKDPEGAPNESLC--TAGVQTEAG-VTDVAWVS--EKGILVASDSGAVELW 120
Query: 149 SLD-----CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL--RSMG 201
+ NK A+ + L S G AV+ + SV+ WDL +++
Sbjct: 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDG------TQAVSGGKDFSVKVWDLSQKAVL 174
Query: 202 KTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ-------ELPGHTHW 254
K+ + + V V K + ++ ++ I LWD R K + +P W
Sbjct: 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234
Query: 255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN-------QRANSLL 307
+PE D A D T N+ LV+ N D + S V S N ++ L
Sbjct: 235 ------HPEKDDTF--ACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFL 285
Query: 308 NSYSD-------------------YEDSVYGLAWSSREPWIFASLSYDGRVV 340
S S+ + D V G+AWS + F ++ +D +V+
Sbjct: 286 ASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337
>pdb|2VW0|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW1|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|4FOQ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 2-Aminoethanesulfonic Acid
pdb|4FOV|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Cyclohexyl-1-Propylsulfonic
Acid
pdb|4FOW|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Ammoniopropane-1-Sulfonate
pdb|4FOY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-(Benzylammonio)ethanesulfonate
pdb|4FP2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2[(Cyclohexylmethyl)ammonio]sulfonate
pdb|4FP3|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(Furan-2-Ylmethyl)ammonio]sulfonate
pdb|4FPC|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPE|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPF|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPG|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Hydroxybenzyl)ammonio]ethanesulfonate
pdb|4FPH|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Fluorobenzyl)ammonio]ethanesulfonate
pdb|4FPJ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPK|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methylbenzyl)ammonio]ethanesulfonate
pdb|4FPL|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3,4-Dichlorobenzyl)ammonio]ethanesulfonate
pdb|4FPO|B Chain B, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chloro-4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Bromobenzyl)ammonio]ethanesulfonate
pdb|4FQ4|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Fluoro-3-Methylbenzyl)ammonio]ethanesulfonate
Length = 697
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
LF+ ++S+ P F +F +G+S A ++IP LY L+S ++ ++++DA
Sbjct: 210 LFNKAISDQEVSTIPLSNP-FQLIFQSGDSTQANYFRIPTLY-TLSSGRV--LSSIDARY 265
Query: 121 G-------KINCVLWWS--SGR--HDKLVSID----EENIFLWSLDCSNKNAQVQSKQS 164
G KIN +S +G+ + + ++ EE + W D KN+Q+ S
Sbjct: 266 GGTHDSKSKINIATSYSDDNGKTWSEPIFAMKFNDYEEQLVYWPRDNKLKNSQISGSAS 324
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 186 ATC--ESSVQFWDLRSMGKTNSI-EHAHVRNVDYDTKKKH--LLVTAADESGIHLWDLRM 240
ATC + V+ W+ + ++ EH+ N + T H LL T + + + LWDL
Sbjct: 679 ATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286
K + GHT+ +P+ D + S D T+ LW +++N
Sbjct: 739 -KECRNTMFGHTNSVNHCRFSPD-DKLLASCSADGTLKLWDATSAN 782
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 57/257 (22%)
Query: 77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK 136
+ + FST + + A + + NS E + D H ++NC + +S H
Sbjct: 663 EDEVLCCAFSTDDRF-IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHH-L 720
Query: 137 LVSIDEENIF--LWSL---DCSNK--------------------------------NAQV 159
L++ + F LW L +C N +A
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 160 QSKQSSGMLHYLSGGAWDPHDVNAVAATC--------------ESSVQFWDLRSMGKTNS 205
+++ S + DP + V C ++ + +D+ + G
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGE 840
Query: 206 IEHAHVRNVDY--DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE 263
I H + Y + + HL V A + + LW+ ++ + + GH W V +P+
Sbjct: 841 IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDS-RSKVADCRGHLSWVHGVMFSPD 899
Query: 264 YDGFILSAGTDSTVNLW 280
F L++ D T+ LW
Sbjct: 900 GSSF-LTSSDDQTIRLW 915
>pdb|2JKB|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In
Complex With 2,7-Anhydro-Neu5ac
Length = 686
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
LF+ ++S+ P F +F +G+S A ++IP LY L+S ++ ++++DA
Sbjct: 199 LFNKAISDQEVSTIPLSNP-FQLIFQSGDSTQANYFRIPTLY-TLSSGRV--LSSIDARY 254
Query: 121 G-------KINCVLWWS--SGR--HDKLVSID----EENIFLWSLDCSNKNAQVQSKQS 164
G KIN +S +G+ + + ++ EE + W D KN+Q+ S
Sbjct: 255 GGTHDSKSKINIATSYSDDNGKTWSEPIFAMKFNDYEEQLVYWPRDNKLKNSQISGSAS 313
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 184 VAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLR 239
++ +C+++V+ WDLR + H H + +V + + T +D+ L+D+R
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMR 279
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 184 VAATCESSVQFWDLRSMGKTNSI----EHAH---VRNVDYDTKKKHLLVTAADESGIHLW 236
VA + E +D+R+ T E AH V V + + + L +TA G+HLW
Sbjct: 228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287
Query: 237 DLRMLKAPIQE 247
PIQ
Sbjct: 288 KYEY---PIQR 295
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 184 VAATCESSVQFWDLR-SMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242
V+ C++S + WD+R M + H N + T +D++ L+DLR
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR--- 256
Query: 243 APIQELPGHTH 253
QEL ++H
Sbjct: 257 -ADQELMTYSH 266
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 184 VAATCESSVQFWDLR-SMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242
V+ C++S + WD+R M + H N + T +D++ L+DLR
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR--- 267
Query: 243 APIQELPGHTH 253
QEL ++H
Sbjct: 268 -ADQELMTYSH 277
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 184 VAATCESSVQFWDLR-SMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242
V+ C++S + WD+R M + H N + T +D++ L+DLR
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR--- 256
Query: 243 APIQELPGHTH 253
QEL ++H
Sbjct: 257 -ADQELMTYSH 266
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 184 VAATCESSVQFWDLR-SMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242
V+ C++S + WD+R M + H N + T +D++ L+DLR
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR--- 256
Query: 243 APIQELPGHTH 253
QEL ++H
Sbjct: 257 -ADQELMTYSH 266
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 184 VAATCESSVQFWDLR-SMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242
V+ C++S + WD+R M + H N + T +D++ L+DLR
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR--- 256
Query: 243 APIQELPGHTH 253
QEL ++H
Sbjct: 257 -ADQELMTYSH 266
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGF- 267
+ + + + +LL++ + + + LW+++ L A + GH + +YD
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA----DYDLLG 172
Query: 268 --ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315
I+S G D ++ LW +++ ES +PN+ ++ + D
Sbjct: 173 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 222
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGF- 267
+ + + + +LL++ + + + LW+++ L A + GH + +YD
Sbjct: 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA----DYDLLG 173
Query: 268 --ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315
I+S G D ++ LW +++ ES +PN+ ++ + D
Sbjct: 174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGF- 267
+ + + + +LL++ + + + LW+++ L A + GH + +YD
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA----DYDLLG 172
Query: 268 --ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315
I+S G D ++ LW +++ ES +PN+ ++ + D
Sbjct: 173 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 222
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGF- 267
+ + + + +LL++ + + + LW+++ L A + GH + +YD
Sbjct: 113 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA----DYDLLG 168
Query: 268 --ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315
I+S G D ++ LW +++ ES +PN+ ++ + D
Sbjct: 169 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 218
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 32/159 (20%)
Query: 107 SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166
SP + +A HVGK+N + SG+ K S+D F+ S+ S
Sbjct: 131 SPDSQYLAT-GTHVGKVN-IFGVESGK--KEYSLDTRGKFILSIAYSPDGK--------- 177
Query: 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLL 224
YL+ GA D + +D+ + +++E HA +R++ + + LL
Sbjct: 178 ---YLASGAID------------GIINIFDIATGKLLHTLEGHAMPIRSLTF-SPDSQLL 221
Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE 263
VTA+D+ I ++D++ L GH W V P+
Sbjct: 222 VTASDDGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPD 259
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGF- 267
+ + + + +LL++ + + + LW+++ L A + GH + +YD
Sbjct: 154 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA----DYDLLG 209
Query: 268 --ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315
I+S G D ++ LW +++ ES +PN+ ++ + D
Sbjct: 210 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 259
>pdb|3CJ1|A Chain A, Structure Of Rattus Norvegicus Ntpdase2
pdb|3CJ7|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Amp
pdb|3CJ9|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium, Amp And Phosphate
pdb|3CJA|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium And Amppnp
Length = 456
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 85
N ++ LS +C L S ++++SSCPF Q F+ VF
Sbjct: 289 NGSAIVSLSGTSNATLCRDLVS---RLFNISSCPFSQCSFNGVF 329
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 25/179 (13%)
Query: 107 SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166
SP+ RI A +AH IN + S ++ +S D+ I LW L+ ++++ + + +
Sbjct: 167 SPR--RIFA-NAHTYHINSISINSD--YETYLSADDLRINLWHLEITDRSFNIVDIKPAN 221
Query: 167 M---LHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMG--------------KTNSIEH 208
M ++ + P+ N V ++ + +++ D+R+ +N
Sbjct: 222 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFF 281
Query: 209 AHVRNVDYDTKKKH--LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD 265
+ + + D K H + D + +WDL M P++ H + +C E D
Sbjct: 282 SEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340
>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
Vulgaris At 1.9 Angstroms Resolution
Length = 1021
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQ 193
DK+V++ N +WS + NK+ + QS G+ +S G+ + +
Sbjct: 636 QDKMVTLKAYNTNVWSSEIYNKDNRYGRYQSHGVAQIVSNGS---------QLSQGYQQE 686
Query: 194 FWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLV 225
WD M +I H+ D D+ K H L+
Sbjct: 687 GWDWNRMEGATTI---HLPLKDLDSPKPHTLM 715
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,414,335
Number of Sequences: 62578
Number of extensions: 473164
Number of successful extensions: 1330
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 250
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)