BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018698
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
 pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
 pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
          Length = 329

 Score = 31.2 bits (69), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 46  QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGL 105
           Q L +P E  +K ++     ++     +++ +   +D     KD  V  L     R  G+
Sbjct: 40  QLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGM 99

Query: 106 KRKDLV--DIEVFQEAKKVIDALQNKEV 131
           +RKDL+  + ++F    K IDA+ ++ +
Sbjct: 100 ERKDLLEANAQIFTVQGKAIDAVASRNI 127


>pdb|2LU1|A Chain A, Pfsub2 Solution Nmr Structure
          Length = 149

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 159 QEFIELVRGENNLRA------ITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKA 212
           QE I +++GE +L +      I  A+K L  +   H KE  ++   ++   N  C     
Sbjct: 29  QELILVLKGELDLHSKNMKNVINNAKKNLEKYFKEHFKEFDKISYDISTPINFLCIFIPT 88

Query: 213 LFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKE 266
           LF+    D L    KQ    L+    E + N       S  +T + YE D  KE
Sbjct: 89  LFDMNNMDLL----KQALLILHNDLHEYVEN------WSFSSTYHTYEADYIKE 132


>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
           7,8- Diaminopelargonic Acid Synthase In Bacillus
           Subtilis
 pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
           7,8- Diaminopelargonic Acid Synthase In Bacillus
           Subtilis
          Length = 448

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 256 PYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVY 315
           PY Y  +    D    +  R+LA  L   ++HH ++     + ++   +   V+P GY+ 
Sbjct: 179 PYVYRSESGDPDECRDQXLRELAQLL---EEHHEEIAALSIESMVQGASGMIVMPEGYLA 235

Query: 316 STKAL 320
             + L
Sbjct: 236 GVREL 240


>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
           Synthase In Bacillus Subtilis
 pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
           Synthase In Bacillus Subtilis
 pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
           Apoenzyme In Bacillus Subtilis
 pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
           Apoenzyme In Bacillus Subtilis
          Length = 448

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 256 PYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVY 315
           PY Y  +    D    +  R+LA  L   ++HH ++     + ++   +   V+P GY+ 
Sbjct: 179 PYVYRSESGDPDECRDQCLRELAQLL---EEHHEEIAALSIESMVQGASGMIVMPEGYLA 235

Query: 316 STKAL 320
             + L
Sbjct: 236 GVREL 240


>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
 pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
           Aquifex Aeolicus
          Length = 478

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 164 LVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTE------CTTYKALFEPK 217
           LV GE    A      ++AP+ AT ++ L++  A +  K+N +       T Y A F  K
Sbjct: 76  LVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTK 135

Query: 218 Q-WDF 221
             WD 
Sbjct: 136 NPWDL 140


>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
           Plasmodium Falciparum
 pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
           Plasmodium Falciparum
 pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
           Protease (hap) From Plasmodium Falciparum
 pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
 pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
 pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
 pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
          Length = 332

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 76  NVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDI 113
           N  D S S+ + KDD    LTS    + G+  KDLV I
Sbjct: 60  NHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTI 97


>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
           From Plasmodium Falciparum
 pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
 pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
 pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
 pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
           Protease (Hap) From Plasmodium Falciparum
          Length = 451

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 76  NVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDI 113
           N  D S S+ + KDD    LTS    + G+  KDLV I
Sbjct: 179 NHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTI 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,263,323
Number of Sequences: 62578
Number of extensions: 407945
Number of successful extensions: 1065
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 16
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)