Query 018700
Match_columns 351
No_of_seqs 544 out of 1939
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 03:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1007 WD repeat protein TSSC 100.0 6.2E-47 1.4E-51 289.8 27.0 346 3-350 1-366 (370)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-47 2.7E-52 307.6 21.3 280 15-343 174-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.1E-44 2.3E-49 287.5 24.8 288 12-347 111-441 (480)
4 KOG0271 Notchless-like WD40 re 100.0 6.1E-44 1.3E-48 283.2 24.4 283 11-343 152-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 7.2E-44 1.6E-48 286.0 20.1 248 62-350 172-423 (459)
6 KOG0264 Nucleosome remodeling 100.0 3.4E-41 7.3E-46 273.3 30.0 329 10-347 37-406 (422)
7 KOG0286 G-protein beta subunit 100.0 5.3E-40 1.1E-44 252.2 29.0 287 12-343 51-343 (343)
8 KOG0279 G protein beta subunit 100.0 1.7E-39 3.6E-44 247.9 30.3 289 11-346 10-314 (315)
9 KOG0277 Peroxisomal targeting 100.0 3.7E-40 8.1E-45 248.3 23.5 280 29-344 22-308 (311)
10 KOG0315 G-protein beta subunit 100.0 2.3E-39 5E-44 243.3 27.5 267 38-347 16-290 (311)
11 KOG0279 G protein beta subunit 100.0 6.7E-39 1.4E-43 244.6 25.6 254 56-346 6-263 (315)
12 KOG0284 Polyadenylation factor 100.0 2.1E-40 4.5E-45 265.1 17.8 279 16-344 96-379 (464)
13 KOG0263 Transcription initiati 100.0 3.1E-39 6.7E-44 278.3 24.3 251 62-346 375-650 (707)
14 KOG0286 G-protein beta subunit 100.0 4.8E-38 1E-42 241.5 27.0 249 59-345 49-303 (343)
15 KOG0284 Polyadenylation factor 100.0 9.3E-39 2E-43 255.6 16.6 239 65-345 96-337 (464)
16 KOG0263 Transcription initiati 100.0 3.5E-37 7.6E-42 265.7 26.5 299 7-333 369-703 (707)
17 KOG0295 WD40 repeat-containing 100.0 7E-38 1.5E-42 247.2 18.1 251 58-349 101-368 (406)
18 KOG0293 WD40 repeat-containing 100.0 2.7E-36 5.8E-41 242.1 24.3 288 16-347 224-515 (519)
19 KOG0273 Beta-transducin family 100.0 1.1E-35 2.5E-40 242.1 28.1 278 16-345 235-523 (524)
20 KOG0265 U5 snRNP-specific prot 100.0 1.2E-35 2.5E-40 229.1 26.6 279 17-343 48-336 (338)
21 KOG0295 WD40 repeat-containing 100.0 2.2E-36 4.7E-41 238.8 22.7 280 18-344 110-405 (406)
22 KOG0291 WD40-repeat-containing 100.0 5.5E-35 1.2E-39 250.7 30.9 312 7-347 298-614 (893)
23 KOG0273 Beta-transducin family 100.0 3.6E-36 7.9E-41 245.0 22.4 240 65-348 235-485 (524)
24 KOG0276 Vesicle coat complex C 100.0 2.1E-36 4.5E-41 254.4 21.6 251 60-351 8-263 (794)
25 KOG0282 mRNA splicing factor [ 100.0 2.9E-36 6.4E-41 246.3 21.4 287 12-343 210-503 (503)
26 KOG0315 G-protein beta subunit 100.0 5.8E-35 1.3E-39 219.7 26.3 269 9-323 33-309 (311)
27 KOG0318 WD40 repeat stress pro 100.0 2.7E-34 5.8E-39 237.1 32.1 292 14-348 145-563 (603)
28 KOG0645 WD40 repeat protein [G 100.0 3.2E-34 6.9E-39 218.2 29.8 288 18-345 16-311 (312)
29 KOG0285 Pleiotropic regulator 100.0 1E-35 2.3E-40 234.7 21.1 244 58-346 144-390 (460)
30 KOG0313 Microtubule binding pr 100.0 8.8E-35 1.9E-39 230.9 26.4 273 40-348 123-421 (423)
31 KOG0319 WD40-repeat-containing 100.0 4.3E-35 9.3E-40 250.7 25.5 280 25-345 333-619 (775)
32 KOG0291 WD40-repeat-containing 100.0 3.2E-34 7E-39 246.0 30.9 288 12-347 261-552 (893)
33 KOG0265 U5 snRNP-specific prot 100.0 7.5E-35 1.6E-39 224.7 23.1 251 59-346 41-297 (338)
34 cd00200 WD40 WD40 domain, foun 100.0 2.3E-33 5E-38 234.6 33.1 279 16-343 9-289 (289)
35 KOG0266 WD40 repeat-containing 100.0 3.7E-34 8.1E-39 251.9 28.9 284 16-345 159-454 (456)
36 PLN00181 protein SPA1-RELATED; 100.0 1.5E-32 3.3E-37 258.9 35.9 292 17-344 484-792 (793)
37 KOG0296 Angio-associated migra 100.0 5.5E-33 1.2E-37 219.7 27.3 280 15-345 63-398 (399)
38 KOG0643 Translation initiation 100.0 7.9E-34 1.7E-38 215.7 21.6 264 60-346 5-318 (327)
39 KOG0277 Peroxisomal targeting 100.0 1.3E-33 2.8E-38 213.1 22.4 247 69-346 12-266 (311)
40 KOG0266 WD40 repeat-containing 100.0 1.6E-33 3.5E-38 247.9 26.9 246 59-346 152-410 (456)
41 KOG0316 Conserved WD40 repeat- 100.0 1.3E-33 2.9E-38 210.8 21.7 243 58-346 10-258 (307)
42 KOG0285 Pleiotropic regulator 100.0 2.9E-33 6.3E-38 220.9 24.6 291 13-346 148-440 (460)
43 KOG0318 WD40 repeat stress pro 100.0 1.7E-32 3.7E-37 226.5 29.9 300 15-345 189-602 (603)
44 KOG0281 Beta-TrCP (transducin 100.0 1.6E-34 3.4E-39 227.4 15.2 263 41-349 216-481 (499)
45 KOG0276 Vesicle coat complex C 100.0 7.4E-33 1.6E-37 233.1 25.8 276 18-341 15-295 (794)
46 KOG0319 WD40-repeat-containing 100.0 5.5E-33 1.2E-37 237.9 25.4 268 40-349 301-581 (775)
47 KOG0292 Vesicle coat complex C 100.0 3.7E-33 8E-38 243.5 24.3 280 18-346 11-322 (1202)
48 KOG0772 Uncharacterized conser 100.0 8.5E-33 1.8E-37 227.9 23.0 302 12-343 163-485 (641)
49 KOG0292 Vesicle coat complex C 100.0 2.7E-33 5.8E-38 244.3 20.4 245 62-346 6-281 (1202)
50 KOG0283 WD40 repeat-containing 100.0 9.7E-33 2.1E-37 240.2 23.5 257 59-349 260-580 (712)
51 KOG0278 Serine/threonine kinas 100.0 1.7E-33 3.8E-38 212.0 16.1 244 59-346 53-298 (334)
52 cd00200 WD40 WD40 domain, foun 100.0 1.1E-31 2.3E-36 224.5 28.2 245 60-346 4-250 (289)
53 PLN00181 protein SPA1-RELATED; 100.0 1.1E-31 2.3E-36 253.2 31.0 257 61-345 479-738 (793)
54 KOG0645 WD40 repeat protein [G 100.0 4.9E-31 1.1E-35 200.9 28.0 250 55-346 4-262 (312)
55 KOG0281 Beta-TrCP (transducin 100.0 1.8E-33 3.8E-38 221.5 14.7 230 64-347 196-430 (499)
56 KOG1407 WD40 repeat protein [F 100.0 4.4E-32 9.5E-37 205.6 20.6 247 59-345 14-261 (313)
57 KOG0282 mRNA splicing factor [ 100.0 5E-33 1.1E-37 227.4 15.9 249 59-346 208-463 (503)
58 KOG0306 WD40-repeat-containing 100.0 1.7E-31 3.7E-36 229.3 25.7 264 40-346 392-665 (888)
59 KOG0305 Anaphase promoting com 100.0 6.7E-31 1.5E-35 222.9 26.5 261 40-346 195-462 (484)
60 KOG0302 Ribosome Assembly prot 100.0 7.9E-31 1.7E-35 208.5 22.8 308 29-343 93-436 (440)
61 KOG0973 Histone transcription 100.0 2E-30 4.3E-35 231.5 27.6 301 12-346 9-356 (942)
62 KOG0268 Sof1-like rRNA process 100.0 6.1E-32 1.3E-36 213.7 15.6 249 59-345 60-345 (433)
63 KOG0640 mRNA cleavage stimulat 100.0 1.1E-30 2.3E-35 202.9 21.1 282 51-344 98-425 (430)
64 KOG1407 WD40 repeat protein [F 100.0 7.6E-30 1.7E-34 193.5 25.2 280 16-345 20-311 (313)
65 PTZ00420 coronin; Provisional 100.0 1.8E-29 3.9E-34 222.6 31.5 229 87-346 50-294 (568)
66 KOG0641 WD40 repeat protein [G 100.0 8.3E-29 1.8E-33 184.4 29.9 292 15-345 31-349 (350)
67 KOG0288 WD40 repeat protein Ti 100.0 6.9E-32 1.5E-36 216.7 14.4 259 39-343 194-459 (459)
68 KOG0316 Conserved WD40 repeat- 100.0 1.1E-29 2.3E-34 190.0 24.1 278 18-347 19-301 (307)
69 PTZ00420 coronin; Provisional 100.0 3.2E-29 6.8E-34 221.1 31.4 253 42-326 51-318 (568)
70 KOG0275 Conserved WD40 repeat- 100.0 6.3E-31 1.4E-35 205.5 17.1 276 22-343 219-507 (508)
71 KOG0306 WD40-repeat-containing 100.0 4E-29 8.7E-34 214.8 29.2 264 40-348 342-625 (888)
72 PTZ00421 coronin; Provisional 100.0 1.2E-29 2.7E-34 222.5 26.9 234 60-325 70-314 (493)
73 KOG0310 Conserved WD40 repeat- 100.0 4.4E-30 9.6E-35 210.6 22.3 276 17-342 27-306 (487)
74 KOG0313 Microtubule binding pr 100.0 5.2E-30 1.1E-34 203.9 21.5 248 61-347 101-378 (423)
75 PTZ00421 coronin; Provisional 100.0 7E-29 1.5E-33 217.8 30.6 253 66-346 21-291 (493)
76 KOG1446 Histone H3 (Lys4) meth 100.0 9.7E-29 2.1E-33 192.6 26.9 244 63-347 12-264 (311)
77 KOG0294 WD40 repeat-containing 100.0 8.9E-29 1.9E-33 192.5 26.1 268 29-347 2-283 (362)
78 KOG0290 Conserved WD40 repeat- 100.0 9.7E-29 2.1E-33 190.3 25.4 308 8-342 39-362 (364)
79 KOG0289 mRNA splicing factor [ 100.0 4.5E-29 9.8E-34 201.9 23.6 280 19-344 222-505 (506)
80 KOG0310 Conserved WD40 repeat- 100.0 2.9E-29 6.3E-34 205.8 21.3 242 64-347 25-270 (487)
81 KOG0296 Angio-associated migra 100.0 6E-29 1.3E-33 197.0 22.2 244 58-346 57-357 (399)
82 KOG0264 Nucleosome remodeling 100.0 2.9E-29 6.2E-34 204.2 20.9 280 49-348 22-350 (422)
83 KOG0293 WD40 repeat-containing 100.0 7.6E-29 1.6E-33 199.4 21.9 249 59-346 218-471 (519)
84 KOG0274 Cdc4 and related F-box 100.0 1.8E-28 3.9E-33 215.6 26.1 257 40-349 226-486 (537)
85 KOG0641 WD40 repeat protein [G 100.0 4.1E-27 9E-32 175.4 26.8 262 54-346 21-304 (350)
86 KOG0647 mRNA export protein (c 100.0 8.1E-28 1.8E-32 186.2 23.5 280 9-336 19-315 (347)
87 KOG1332 Vesicle coat complex C 100.0 1.9E-28 4E-33 184.3 19.3 253 62-345 8-286 (299)
88 KOG0289 mRNA splicing factor [ 100.0 4.3E-28 9.3E-33 196.2 22.7 236 66-343 220-460 (506)
89 KOG0308 Conserved WD40 repeat- 100.0 9.8E-29 2.1E-33 209.3 19.0 250 64-347 20-287 (735)
90 KOG0275 Conserved WD40 repeat- 100.0 9.1E-29 2E-33 193.5 17.4 252 61-346 209-468 (508)
91 KOG0308 Conserved WD40 repeat- 100.0 7.9E-29 1.7E-33 209.8 18.2 275 38-347 43-329 (735)
92 KOG0269 WD40 repeat-containing 100.0 8.3E-29 1.8E-33 213.5 18.6 255 65-350 39-302 (839)
93 KOG0647 mRNA export protein (c 100.0 8.2E-28 1.8E-32 186.1 21.7 244 63-345 25-281 (347)
94 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-26 7E-31 178.6 30.0 279 16-345 14-303 (311)
95 KOG0307 Vesicle coat complex C 100.0 6.3E-29 1.4E-33 223.1 16.7 276 43-346 42-328 (1049)
96 KOG0269 WD40 repeat-containing 100.0 3.2E-28 7E-33 209.9 19.8 285 21-344 44-339 (839)
97 KOG0772 Uncharacterized conser 100.0 5.6E-28 1.2E-32 199.6 20.1 257 59-347 161-447 (641)
98 KOG0639 Transducin-like enhanc 100.0 6.2E-28 1.3E-32 198.9 20.0 263 40-344 438-703 (705)
99 KOG0300 WD40 repeat-containing 100.0 6.1E-28 1.3E-32 188.4 18.5 252 57-346 140-429 (481)
100 KOG1036 Mitotic spindle checkp 100.0 1E-26 2.2E-31 180.6 25.0 271 10-334 6-293 (323)
101 KOG1036 Mitotic spindle checkp 100.0 5.7E-27 1.2E-31 182.1 23.1 241 64-346 12-263 (323)
102 KOG0288 WD40 repeat protein Ti 100.0 1.1E-28 2.4E-33 198.4 13.5 247 59-348 169-420 (459)
103 KOG0301 Phospholipase A2-activ 100.0 5.6E-27 1.2E-31 200.1 24.4 253 39-346 32-289 (745)
104 KOG4283 Transcription-coupled 100.0 2.4E-27 5.3E-32 183.1 19.9 288 42-347 25-367 (397)
105 KOG0278 Serine/threonine kinas 100.0 3E-28 6.6E-33 183.8 14.1 201 61-284 96-298 (334)
106 KOG0270 WD40 repeat-containing 100.0 1.5E-26 3.3E-31 187.8 24.8 280 42-347 150-451 (463)
107 KOG0321 WD40 repeat-containing 100.0 9.4E-27 2E-31 197.0 23.7 290 24-350 60-396 (720)
108 KOG0274 Cdc4 and related F-box 100.0 4.6E-27 1E-31 206.7 21.9 233 64-348 207-444 (537)
109 KOG0640 mRNA cleavage stimulat 100.0 2.2E-27 4.8E-32 184.6 17.2 211 113-347 105-337 (430)
110 KOG1408 WD40 repeat protein [F 100.0 1.1E-26 2.4E-31 199.1 22.6 244 63-346 457-714 (1080)
111 KOG2445 Nuclear pore complex c 100.0 7.6E-26 1.6E-30 175.8 24.8 272 62-345 10-318 (361)
112 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.2E-25 7E-30 187.3 29.7 264 39-348 8-282 (300)
113 KOG0646 WD40 repeat protein [G 100.0 6.8E-27 1.5E-31 191.0 18.4 266 43-346 62-351 (476)
114 KOG0283 WD40 repeat-containing 100.0 1.6E-26 3.5E-31 201.6 21.7 242 16-284 267-577 (712)
115 KOG0299 U3 snoRNP-associated p 100.0 4.4E-26 9.6E-31 185.9 22.4 255 58-348 135-413 (479)
116 KOG2096 WD40 repeat protein [G 100.0 4.5E-26 9.8E-31 177.9 21.2 274 56-343 77-400 (420)
117 KOG0973 Histone transcription 99.9 3E-26 6.6E-31 205.0 22.0 254 64-346 12-313 (942)
118 KOG0643 Translation initiation 99.9 4.2E-26 9.2E-31 173.8 19.3 208 115-349 5-224 (327)
119 KOG0300 WD40 repeat-containing 99.9 8.7E-26 1.9E-30 176.4 21.0 281 32-347 162-478 (481)
120 KOG0299 U3 snoRNP-associated p 99.9 1E-25 2.2E-30 183.8 22.4 244 62-346 199-457 (479)
121 KOG2055 WD40 repeat protein [G 99.9 1.8E-25 4E-30 182.4 22.9 287 17-347 214-514 (514)
122 KOG0294 WD40 repeat-containing 99.9 3.5E-25 7.7E-30 172.6 23.3 218 39-284 60-282 (362)
123 KOG0305 Anaphase promoting com 99.9 1.7E-25 3.7E-30 190.2 22.0 238 17-284 218-462 (484)
124 KOG0267 Microtubule severing p 99.9 2.4E-27 5.2E-32 203.2 9.8 234 60-336 23-259 (825)
125 KOG0302 Ribosome Assembly prot 99.9 1.2E-25 2.6E-30 179.2 18.4 212 116-345 147-378 (440)
126 KOG1332 Vesicle coat complex C 99.9 1.3E-24 2.7E-29 163.8 21.3 239 27-284 22-287 (299)
127 KOG4328 WD40 protein [Function 99.9 2.1E-24 4.6E-29 176.1 22.1 259 59-345 180-450 (498)
128 KOG0267 Microtubule severing p 99.9 1.2E-26 2.5E-31 199.0 8.8 216 88-348 11-229 (825)
129 KOG1063 RNA polymerase II elon 99.9 1.1E-23 2.4E-28 180.1 26.3 283 41-347 168-650 (764)
130 KOG1539 WD repeat protein [Gen 99.9 2.7E-23 5.9E-28 181.2 29.2 314 8-347 194-608 (910)
131 KOG0301 Phospholipase A2-activ 99.9 2.5E-24 5.5E-29 184.0 22.1 240 57-345 6-249 (745)
132 KOG2048 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 177.6 27.1 285 16-346 25-320 (691)
133 KOG0268 Sof1-like rRNA process 99.9 1.3E-25 2.9E-30 178.1 12.5 206 113-347 59-304 (433)
134 KOG4283 Transcription-coupled 99.9 1.1E-24 2.4E-29 168.4 17.1 225 116-346 39-277 (397)
135 KOG0639 Transducin-like enhanc 99.9 7.1E-25 1.5E-29 181.0 16.9 245 60-345 414-663 (705)
136 KOG4378 Nuclear protein COP1 [ 99.9 3.3E-24 7.2E-29 176.8 20.2 268 41-346 11-281 (673)
137 KOG1539 WD repeat protein [Gen 99.9 2.6E-23 5.7E-28 181.2 26.6 293 17-345 245-648 (910)
138 KOG2048 WD40 repeat protein [G 99.9 3.5E-23 7.6E-28 176.6 26.1 242 63-347 23-277 (691)
139 KOG0646 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 170.0 24.3 280 38-346 14-308 (476)
140 KOG1274 WD40 repeat protein [G 99.9 2.6E-23 5.7E-28 183.1 25.3 241 62-346 10-263 (933)
141 KOG2055 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 172.0 21.2 251 65-347 213-469 (514)
142 KOG2106 Uncharacterized conser 99.9 5.3E-22 1.1E-26 164.2 30.7 235 66-343 247-519 (626)
143 KOG2919 Guanine nucleotide-bin 99.9 2E-23 4.3E-28 163.5 21.0 255 66-347 50-329 (406)
144 KOG1273 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 160.8 21.1 282 19-346 26-323 (405)
145 KOG0307 Vesicle coat complex C 99.9 1.1E-24 2.3E-29 196.2 13.3 254 70-346 11-285 (1049)
146 KOG0650 WD40 repeat nucleolar 99.9 2.8E-23 6E-28 175.0 20.8 249 59-344 394-679 (733)
147 KOG0270 WD40 repeat-containing 99.9 4E-23 8.6E-28 168.1 20.4 208 121-348 174-407 (463)
148 KOG4328 WD40 protein [Function 99.9 3.3E-23 7.2E-28 169.2 17.9 219 109-345 175-399 (498)
149 KOG2096 WD40 repeat protein [G 99.9 9.7E-23 2.1E-27 159.4 19.0 213 113-345 79-308 (420)
150 KOG4378 Nuclear protein COP1 [ 99.9 2.1E-22 4.7E-27 166.2 21.3 218 69-325 83-304 (673)
151 KOG2919 Guanine nucleotide-bin 99.9 7.8E-22 1.7E-26 154.7 23.4 281 15-336 48-361 (406)
152 KOG1273 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 158.2 18.7 245 68-345 26-280 (405)
153 KOG0290 Conserved WD40 repeat- 99.9 1.3E-21 2.7E-26 151.4 22.3 262 63-349 42-322 (364)
154 KOG2106 Uncharacterized conser 99.9 5E-21 1.1E-25 158.5 27.0 264 59-343 98-396 (626)
155 KOG1188 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 159.4 17.5 246 88-345 47-346 (376)
156 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-21 5E-26 163.7 25.2 222 87-347 7-239 (300)
157 KOG1007 WD repeat protein TSSC 99.9 6.8E-22 1.5E-26 152.7 19.4 235 88-347 37-291 (370)
158 KOG0642 Cell-cycle nuclear pro 99.9 1.4E-22 2.9E-27 169.8 16.4 257 60-345 289-561 (577)
159 KOG1274 WD40 repeat protein [G 99.9 5.4E-21 1.2E-25 168.7 26.9 266 19-339 16-294 (933)
160 KOG1445 Tumor-specific antigen 99.9 1.3E-21 2.9E-26 166.2 21.9 148 40-199 53-201 (1012)
161 PRK11028 6-phosphogluconolacto 99.9 8.6E-20 1.9E-24 155.9 33.2 277 39-345 9-304 (330)
162 KOG2445 Nuclear pore complex c 99.9 1.4E-20 3.1E-25 146.6 25.3 257 18-284 15-319 (361)
163 KOG0303 Actin-binding protein 99.9 3.3E-21 7.2E-26 154.9 21.4 232 40-284 55-295 (472)
164 KOG1538 Uncharacterized conser 99.9 5.2E-21 1.1E-25 163.6 21.6 273 16-345 12-293 (1081)
165 KOG0303 Actin-binding protein 99.9 5.8E-21 1.3E-25 153.5 20.6 251 73-348 39-297 (472)
166 KOG1408 WD40 repeat protein [F 99.9 1.2E-21 2.6E-26 168.6 17.7 244 20-284 463-714 (1080)
167 KOG1587 Cytoplasmic dynein int 99.9 1.5E-20 3.3E-25 164.6 25.0 228 91-347 222-474 (555)
168 KOG0321 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 160.5 23.2 258 17-285 101-393 (720)
169 KOG0650 WD40 repeat nucleolar 99.9 1.8E-20 3.8E-25 158.3 23.4 296 16-342 400-732 (733)
170 KOG1009 Chromatin assembly com 99.9 1.3E-20 2.8E-25 152.0 21.2 252 65-345 13-372 (434)
171 KOG1034 Transcriptional repres 99.9 1.2E-20 2.7E-25 148.3 20.4 267 41-344 63-382 (385)
172 KOG1587 Cytoplasmic dynein int 99.9 3.3E-20 7.1E-25 162.5 25.4 277 43-347 223-518 (555)
173 KOG1063 RNA polymerase II elon 99.9 5E-20 1.1E-24 158.0 23.0 275 41-345 337-699 (764)
174 KOG4227 WD40 repeat protein [G 99.9 1.2E-20 2.7E-25 151.8 17.7 278 54-345 45-387 (609)
175 KOG1034 Transcriptional repres 99.9 1.3E-20 2.9E-25 148.1 17.1 262 3-284 62-384 (385)
176 KOG0322 G-protein beta subunit 99.9 9.9E-21 2.2E-25 144.5 15.7 246 61-344 10-322 (323)
177 KOG0649 WD40 repeat protein [G 99.8 6.4E-19 1.4E-23 133.2 20.5 242 66-346 11-275 (325)
178 KOG0642 Cell-cycle nuclear pro 99.8 7.8E-20 1.7E-24 153.4 16.7 257 12-284 290-562 (577)
179 COG2319 FOG: WD40 repeat [Gene 99.8 1E-16 2.2E-21 141.7 34.1 285 18-347 67-361 (466)
180 KOG1517 Guanine nucleotide bin 99.8 2.8E-18 6E-23 154.0 22.3 248 67-346 1066-1334(1387)
181 KOG1188 WD40 repeat protein [G 99.8 1E-18 2.3E-23 138.2 17.1 190 136-347 43-244 (376)
182 KOG1523 Actin-related protein 99.8 4.7E-18 1E-22 133.5 20.4 205 64-284 9-237 (361)
183 COG2319 FOG: WD40 repeat [Gene 99.8 3.2E-17 6.9E-22 145.0 28.4 248 60-347 60-316 (466)
184 KOG0644 Uncharacterized conser 99.8 1E-19 2.2E-24 159.2 11.9 241 59-345 184-468 (1113)
185 PF10282 Lactonase: Lactonase, 99.8 6.6E-16 1.4E-20 132.1 34.8 294 31-345 2-322 (345)
186 KOG2110 Uncharacterized conser 99.8 3.5E-17 7.5E-22 131.0 24.4 237 65-348 5-251 (391)
187 KOG1538 Uncharacterized conser 99.8 1.5E-18 3.3E-23 148.7 17.4 230 67-343 14-250 (1081)
188 KOG1517 Guanine nucleotide bin 99.8 1E-17 2.2E-22 150.5 21.8 285 24-347 1072-1383(1387)
189 PRK11028 6-phosphogluconolacto 99.8 1.9E-16 4.2E-21 135.3 28.1 246 22-284 40-305 (330)
190 KOG1310 WD40 repeat protein [G 99.8 2.9E-18 6.4E-23 143.8 16.1 227 112-346 42-304 (758)
191 KOG1445 Tumor-specific antigen 99.8 4.4E-18 9.4E-23 145.2 17.3 246 73-346 587-845 (1012)
192 PRK01742 tolB translocation pr 99.8 1.8E-17 4E-22 145.9 22.1 211 90-344 183-400 (429)
193 KOG0771 Prolactin regulatory e 99.8 3.6E-17 7.9E-22 133.1 21.6 194 124-345 148-354 (398)
194 KOG1272 WD40-repeat-containing 99.8 4.8E-19 1E-23 145.5 9.9 229 66-343 130-360 (545)
195 PRK01742 tolB translocation pr 99.8 1.2E-16 2.5E-21 140.8 25.5 239 42-325 184-426 (429)
196 COG2706 3-carboxymuconate cycl 99.8 2.7E-15 5.9E-20 120.5 30.5 297 29-347 3-323 (346)
197 KOG1009 Chromatin assembly com 99.8 2.9E-17 6.3E-22 132.9 19.1 250 18-284 15-373 (434)
198 KOG1523 Actin-related protein 99.8 1.7E-16 3.7E-21 124.8 22.4 244 12-274 6-269 (361)
199 KOG0771 Prolactin regulatory e 99.8 8.1E-18 1.8E-22 136.8 15.2 195 69-284 148-355 (398)
200 KOG0649 WD40 repeat protein [G 99.8 3.6E-16 7.8E-21 118.5 22.5 277 18-343 12-314 (325)
201 KOG1310 WD40 repeat protein [G 99.8 2.7E-17 5.7E-22 138.1 17.3 213 59-285 44-305 (758)
202 KOG1524 WD40 repeat-containing 99.8 2.8E-17 6.1E-22 137.6 17.0 198 88-341 82-282 (737)
203 KOG3881 Uncharacterized conser 99.8 2E-16 4.3E-21 127.6 21.0 252 62-346 52-321 (412)
204 KOG2111 Uncharacterized conser 99.8 4.7E-16 1E-20 122.3 22.2 237 67-347 7-258 (346)
205 KOG2110 Uncharacterized conser 99.8 1.5E-14 3.2E-19 116.1 30.0 291 24-347 13-332 (391)
206 KOG1240 Protein kinase contain 99.8 4.9E-16 1.1E-20 141.8 24.1 281 56-346 1039-1335(1431)
207 KOG1334 WD40 repeat protein [G 99.8 3.3E-17 7.2E-22 135.6 15.1 297 10-344 136-465 (559)
208 PRK03629 tolB translocation pr 99.8 1.3E-15 2.9E-20 133.8 26.4 237 43-324 180-427 (429)
209 KOG2394 WD40 protein DMR-N9 [G 99.8 1.6E-16 3.4E-21 133.1 19.2 193 130-346 183-453 (636)
210 KOG2139 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 119.9 23.8 246 20-284 102-384 (445)
211 KOG4497 Uncharacterized conser 99.7 6E-16 1.3E-20 122.3 19.7 240 65-345 48-391 (447)
212 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-14 2.4E-19 124.4 29.1 273 39-349 13-351 (369)
213 KOG0322 G-protein beta subunit 99.7 1.2E-16 2.7E-21 122.4 15.1 240 29-282 26-322 (323)
214 KOG2139 WD40 repeat protein [G 99.7 2.3E-15 5.1E-20 120.4 21.7 248 66-334 99-364 (445)
215 KOG1963 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 128.1 28.6 296 20-346 209-539 (792)
216 KOG1524 WD40 repeat-containing 99.7 2.3E-16 5E-21 132.2 16.2 229 63-340 12-250 (737)
217 KOG1963 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 130.5 23.7 241 69-347 20-324 (792)
218 PRK04922 tolB translocation pr 99.7 8.8E-15 1.9E-19 129.2 24.8 224 60-324 198-432 (433)
219 PF08662 eIF2A: Eukaryotic tra 99.7 2E-15 4.2E-20 117.5 17.9 151 124-283 9-179 (194)
220 PRK04922 tolB translocation pr 99.7 7.4E-15 1.6E-19 129.7 23.8 216 91-346 184-412 (433)
221 KOG2111 Uncharacterized conser 99.7 1.6E-13 3.4E-18 108.3 28.1 290 22-344 11-321 (346)
222 PRK05137 tolB translocation pr 99.7 2.6E-14 5.7E-19 126.4 26.2 217 43-284 183-413 (435)
223 PRK03629 tolB translocation pr 99.7 1.5E-14 3.3E-19 127.2 24.5 217 91-346 179-407 (429)
224 PRK05137 tolB translocation pr 99.7 1.4E-14 3.1E-19 128.1 24.2 216 91-346 182-413 (435)
225 PRK02889 tolB translocation pr 99.7 2.7E-14 5.8E-19 125.8 24.7 226 61-325 191-425 (427)
226 KOG4227 WD40 repeat protein [G 99.7 2.2E-15 4.9E-20 121.8 16.2 171 114-286 50-228 (609)
227 KOG1272 WD40-repeat-containing 99.7 5.2E-17 1.1E-21 133.6 6.9 195 122-348 131-326 (545)
228 PF08662 eIF2A: Eukaryotic tra 99.7 8.3E-15 1.8E-19 114.0 18.3 148 172-346 9-180 (194)
229 KOG4497 Uncharacterized conser 99.7 2.3E-16 5.1E-21 124.6 9.6 221 70-343 13-238 (447)
230 KOG1334 WD40 repeat protein [G 99.7 1.9E-15 4E-20 125.4 15.2 263 59-345 136-424 (559)
231 KOG0280 Uncharacterized conser 99.7 4.4E-14 9.4E-19 110.2 21.4 303 18-347 14-335 (339)
232 KOG2321 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 122.5 19.9 240 61-346 47-303 (703)
233 PRK02889 tolB translocation pr 99.7 3.8E-14 8.3E-19 124.8 23.2 198 112-338 187-394 (427)
234 KOG1354 Serine/threonine prote 99.7 3.8E-14 8.2E-19 112.9 20.1 253 64-346 24-360 (433)
235 KOG0644 Uncharacterized conser 99.7 1.9E-16 4E-21 139.2 7.8 228 110-351 180-432 (1113)
236 KOG1240 Protein kinase contain 99.7 2E-13 4.4E-18 125.1 27.1 294 39-343 1068-1431(1431)
237 PF10282 Lactonase: Lactonase, 99.6 1.8E-12 4E-17 111.0 31.0 255 20-284 40-323 (345)
238 KOG2394 WD40 protein DMR-N9 [G 99.6 7.4E-15 1.6E-19 123.3 14.8 200 122-346 125-363 (636)
239 KOG1354 Serine/threonine prote 99.6 3.8E-13 8.3E-18 107.3 22.2 312 16-342 25-431 (433)
240 PRK04792 tolB translocation pr 99.6 6.5E-13 1.4E-17 117.4 24.6 225 60-324 212-446 (448)
241 TIGR02800 propeller_TolB tol-p 99.6 1.1E-12 2.4E-17 116.1 25.7 215 42-282 170-396 (417)
242 KOG3881 Uncharacterized conser 99.6 1.5E-13 3.3E-18 111.2 17.3 205 66-284 106-321 (412)
243 PRK00178 tolB translocation pr 99.6 2.1E-12 4.5E-17 114.5 25.9 226 59-324 192-427 (430)
244 PF02239 Cytochrom_D1: Cytochr 99.6 4.1E-12 8.8E-17 108.8 26.2 242 88-347 13-304 (369)
245 KOG1409 Uncharacterized conser 99.6 9.1E-13 2E-17 105.1 19.9 287 37-347 41-396 (404)
246 KOG0280 Uncharacterized conser 99.6 6.4E-13 1.4E-17 103.8 18.6 230 89-345 44-284 (339)
247 KOG2315 Predicted translation 99.6 2.9E-12 6.4E-17 108.5 23.4 271 22-346 40-391 (566)
248 PRK04792 tolB translocation pr 99.5 3.1E-12 6.7E-17 113.1 23.5 202 114-345 211-425 (448)
249 COG2706 3-carboxymuconate cycl 99.5 1.2E-10 2.5E-15 94.2 30.0 253 19-284 42-322 (346)
250 TIGR02800 propeller_TolB tol-p 99.5 3.5E-12 7.7E-17 112.9 23.8 214 91-345 170-397 (417)
251 PRK01029 tolB translocation pr 99.5 4.6E-12 1E-16 111.2 24.1 206 114-346 178-404 (428)
252 PRK00178 tolB translocation pr 99.5 9E-12 2E-16 110.5 24.4 203 113-345 191-406 (430)
253 KOG2321 WD40 repeat protein [G 99.5 1.3E-11 2.8E-16 105.0 22.1 273 20-347 55-345 (703)
254 KOG4547 WD40 repeat-containing 99.5 3.4E-12 7.4E-17 108.8 17.3 186 136-347 8-222 (541)
255 PRK01029 tolB translocation pr 99.5 7.2E-11 1.6E-15 103.7 25.7 205 62-284 181-404 (428)
256 KOG0309 Conserved WD40 repeat- 99.5 9.3E-13 2E-17 115.0 13.2 300 17-348 25-342 (1081)
257 KOG2315 Predicted translation 99.5 4.6E-11 1E-15 101.4 22.0 222 42-284 146-391 (566)
258 KOG4547 WD40 repeat-containing 99.4 5.2E-11 1.1E-15 101.7 21.9 182 87-284 11-221 (541)
259 KOG1409 Uncharacterized conser 99.4 9.1E-12 2E-16 99.5 16.2 257 54-347 13-272 (404)
260 KOG2041 WD40 repeat protein [G 99.4 3.9E-11 8.5E-16 104.8 20.6 280 19-346 17-338 (1189)
261 KOG0974 WD-repeat protein WDR6 99.4 1.1E-11 2.4E-16 112.2 16.6 197 122-346 89-289 (967)
262 KOG4190 Uncharacterized conser 99.4 2.5E-12 5.5E-17 109.0 11.3 215 56-284 726-949 (1034)
263 KOG2041 WD40 repeat protein [G 99.4 2.9E-11 6.4E-16 105.6 16.8 242 64-336 13-279 (1189)
264 PLN02919 haloacid dehalogenase 99.4 5.3E-10 1.1E-14 108.0 25.9 256 70-347 572-890 (1057)
265 KOG1064 RAVE (regulator of V-A 99.4 4.4E-12 9.6E-17 120.6 10.9 190 118-347 2206-2400(2439)
266 KOG1064 RAVE (regulator of V-A 99.4 1.3E-11 2.9E-16 117.4 13.7 188 62-284 2205-2399(2439)
267 PRK04043 tolB translocation pr 99.3 2.2E-09 4.7E-14 93.9 26.1 197 66-283 188-400 (419)
268 COG5170 CDC55 Serine/threonine 99.3 1.4E-10 3.1E-15 91.8 16.7 251 65-345 26-367 (460)
269 KOG0974 WD-repeat protein WDR6 99.3 5E-11 1.1E-15 108.1 15.8 194 66-285 88-290 (967)
270 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.1E-09 8.9E-14 88.5 25.8 223 91-347 27-332 (352)
271 KOG0309 Conserved WD40 repeat- 99.3 1.4E-11 3E-16 107.9 11.1 215 109-348 14-235 (1081)
272 KOG4714 Nucleoporin [Nuclear s 99.3 4.5E-11 9.8E-16 92.1 12.1 221 112-343 81-316 (319)
273 PRK04043 tolB translocation pr 99.3 2.4E-09 5.3E-14 93.6 23.8 192 122-345 189-400 (419)
274 PF15492 Nbas_N: Neuroblastoma 99.3 6.7E-09 1.5E-13 81.8 22.6 220 126-350 3-264 (282)
275 COG4946 Uncharacterized protei 99.3 1.6E-08 3.4E-13 84.8 25.2 143 118-271 357-506 (668)
276 PF08450 SGL: SMP-30/Gluconola 99.3 2.9E-08 6.3E-13 81.2 26.7 224 70-334 4-245 (246)
277 PF04762 IKI3: IKI3 family; I 99.2 7.5E-08 1.6E-12 91.8 29.0 246 64-343 74-377 (928)
278 PLN02919 haloacid dehalogenase 99.2 4.6E-08 9.9E-13 94.9 28.0 201 67-285 625-890 (1057)
279 KOG4532 WD40-like repeat conta 99.2 1E-08 2.2E-13 79.8 18.4 184 87-284 90-283 (344)
280 KOG1832 HIV-1 Vpr-binding prot 99.2 3.2E-11 6.9E-16 107.8 5.5 213 59-327 1095-1314(1516)
281 KOG4190 Uncharacterized conser 99.1 1E-10 2.2E-15 99.5 7.4 166 112-284 727-907 (1034)
282 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.5E-07 5.5E-12 77.9 27.4 238 27-284 11-331 (352)
283 KOG2314 Translation initiation 99.1 2E-08 4.3E-13 85.7 20.6 238 69-345 214-525 (698)
284 COG5354 Uncharacterized protei 99.1 5.1E-08 1.1E-12 82.5 21.4 200 66-284 174-396 (561)
285 PF04762 IKI3: IKI3 family; I 99.1 8.4E-07 1.8E-11 84.8 31.1 289 40-345 95-456 (928)
286 KOG4714 Nucleoporin [Nuclear s 99.1 1.4E-09 2.9E-14 84.1 10.1 147 179-345 100-254 (319)
287 KOG2695 WD40 repeat protein [G 99.1 7E-10 1.5E-14 89.0 8.8 139 184-345 228-376 (425)
288 PF15492 Nbas_N: Neuroblastoma 99.1 1.7E-07 3.6E-12 74.1 21.6 199 70-284 2-260 (282)
289 KOG3914 WD repeat protein WDR4 99.1 4E-09 8.6E-14 86.4 12.7 154 170-347 64-225 (390)
290 KOG3914 WD repeat protein WDR4 99.1 6.1E-09 1.3E-13 85.3 13.4 154 124-286 66-226 (390)
291 KOG4532 WD40-like repeat conta 99.0 9.2E-08 2E-12 74.6 17.9 189 136-348 87-285 (344)
292 KOG1008 Uncharacterized conser 99.0 5.4E-10 1.2E-14 96.7 6.2 208 66-284 57-276 (783)
293 KOG2695 WD40 repeat protein [G 99.0 2E-09 4.4E-14 86.5 8.3 148 127-284 218-377 (425)
294 COG5170 CDC55 Serine/threonine 99.0 3.4E-08 7.3E-13 78.6 14.4 219 119-345 25-309 (460)
295 PF00930 DPPIV_N: Dipeptidyl p 98.9 1.7E-06 3.6E-11 74.7 24.5 259 42-335 23-348 (353)
296 COG4946 Uncharacterized protei 98.9 2.3E-06 5E-11 72.2 23.5 189 72-284 273-478 (668)
297 KOG1912 WD40 repeat protein [G 98.9 3.9E-07 8.4E-12 81.2 19.8 240 67-346 17-305 (1062)
298 KOG2314 Translation initiation 98.9 1.1E-06 2.5E-11 75.4 21.4 261 40-345 280-573 (698)
299 KOG1645 RING-finger-containing 98.9 2.6E-07 5.5E-12 76.1 16.9 248 60-346 188-462 (463)
300 COG5354 Uncharacterized protei 98.9 1.1E-06 2.3E-11 74.8 20.8 203 65-284 71-307 (561)
301 PF00400 WD40: WD domain, G-be 98.9 4.6E-09 1E-13 58.6 4.9 38 305-343 2-39 (39)
302 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.6E-13 56.9 5.9 38 243-281 2-39 (39)
303 TIGR03300 assembly_YfgL outer 98.8 3.9E-06 8.4E-11 73.3 23.7 221 77-342 145-376 (377)
304 KOG1008 Uncharacterized conser 98.8 3.3E-09 7.2E-14 92.0 3.7 202 120-346 56-276 (783)
305 PF08450 SGL: SMP-30/Gluconola 98.8 4.7E-06 1E-10 68.2 20.8 196 125-346 4-214 (246)
306 KOG0882 Cyclophilin-related pe 98.8 2E-07 4.3E-12 77.9 12.4 219 118-346 7-232 (558)
307 PF07433 DUF1513: Protein of u 98.7 2.4E-05 5.3E-10 63.9 23.7 225 66-335 5-276 (305)
308 KOG1832 HIV-1 Vpr-binding prot 98.7 1.7E-08 3.6E-13 91.0 5.5 198 109-348 1090-1294(1516)
309 KOG1912 WD40 repeat protein [G 98.7 1E-05 2.2E-10 72.5 22.1 187 39-240 86-305 (1062)
310 COG0823 TolB Periplasmic compo 98.7 2.9E-06 6.4E-11 74.0 17.9 165 112-284 184-359 (425)
311 KOG1920 IkappaB kinase complex 98.7 2.5E-05 5.4E-10 73.5 24.2 203 65-285 68-324 (1265)
312 PF11768 DUF3312: Protein of u 98.7 2.3E-06 5E-11 74.4 16.4 117 120-240 205-330 (545)
313 KOG2114 Vacuolar assembly/sort 98.6 1.1E-05 2.3E-10 73.2 20.6 196 72-284 30-244 (933)
314 PF13360 PQQ_2: PQQ-like domai 98.6 1.3E-05 2.9E-10 65.1 20.0 212 90-348 2-233 (238)
315 TIGR03300 assembly_YfgL outer 98.6 5.5E-05 1.2E-09 66.1 24.6 224 76-346 104-339 (377)
316 PF07433 DUF1513: Protein of u 98.6 3.2E-05 6.9E-10 63.2 20.4 197 123-346 7-248 (305)
317 COG0823 TolB Periplasmic compo 98.6 6.7E-06 1.5E-10 71.8 17.7 201 19-238 195-399 (425)
318 PF06977 SdiA-regulated: SdiA- 98.6 0.00012 2.5E-09 59.0 23.4 203 59-280 15-247 (248)
319 PRK02888 nitrous-oxide reducta 98.6 8.7E-06 1.9E-10 72.7 18.0 106 175-284 283-405 (635)
320 KOG2066 Vacuolar assembly/sort 98.6 5E-06 1.1E-10 74.7 16.4 181 121-345 40-233 (846)
321 PF04053 Coatomer_WDAD: Coatom 98.5 7.2E-05 1.6E-09 65.7 22.6 228 59-346 26-263 (443)
322 KOG1920 IkappaB kinase complex 98.5 1.8E-05 3.9E-10 74.4 19.2 199 120-347 68-324 (1265)
323 KOG1275 PAB-dependent poly(A) 98.5 2.5E-06 5.4E-11 77.6 13.1 184 135-345 149-342 (1118)
324 KOG1275 PAB-dependent poly(A) 98.5 5.4E-06 1.2E-10 75.5 14.7 176 87-282 153-341 (1118)
325 KOG0882 Cyclophilin-related pe 98.5 4.7E-06 1E-10 69.9 13.0 225 40-284 28-306 (558)
326 KOG1645 RING-finger-containing 98.5 1.3E-06 2.7E-11 72.2 9.3 116 166-284 191-316 (463)
327 PF11768 DUF3312: Protein of u 98.4 1.7E-05 3.8E-10 69.2 16.1 122 64-200 204-331 (545)
328 PF08553 VID27: VID27 cytoplas 98.4 4.8E-05 1E-09 70.6 19.6 142 132-284 492-648 (794)
329 PF13360 PQQ_2: PQQ-like domai 98.4 0.00014 3.1E-09 59.0 20.4 183 76-284 35-231 (238)
330 PF02897 Peptidase_S9_N: Proly 98.4 0.0011 2.5E-08 58.7 26.4 246 68-347 126-406 (414)
331 PRK11138 outer membrane biogen 98.3 0.00094 2E-08 58.8 25.4 180 136-344 208-393 (394)
332 PF06977 SdiA-regulated: SdiA- 98.3 0.00055 1.2E-08 55.2 21.2 200 115-342 16-247 (248)
333 COG3391 Uncharacterized conser 98.3 0.00074 1.6E-08 58.9 23.7 198 122-346 75-284 (381)
334 KOG2114 Vacuolar assembly/sort 98.3 0.00032 7E-09 64.0 21.4 214 24-255 31-259 (933)
335 KOG3617 WD40 and TPR repeat-co 98.3 5.4E-05 1.2E-09 68.8 16.5 288 22-343 21-331 (1416)
336 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00025 5.5E-09 61.2 20.5 232 74-335 1-301 (353)
337 PF08553 VID27: VID27 cytoplas 98.3 2.3E-05 4.9E-10 72.6 13.7 134 188-344 502-646 (794)
338 KOG2066 Vacuolar assembly/sort 98.3 8.2E-05 1.8E-09 67.2 16.4 173 28-239 49-233 (846)
339 PF14583 Pectate_lyase22: Olig 98.3 0.0019 4E-08 54.9 23.6 281 24-344 43-380 (386)
340 COG3386 Gluconolactonase [Carb 98.2 0.0012 2.5E-08 55.3 21.4 227 70-336 29-277 (307)
341 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0024 5.1E-08 56.2 24.3 168 92-284 62-247 (410)
342 PF06433 Me-amine-dh_H: Methyl 98.1 0.0032 7E-08 52.5 23.5 276 28-347 2-322 (342)
343 PRK02888 nitrous-oxide reducta 98.1 0.00011 2.4E-09 65.9 14.2 199 127-346 199-405 (635)
344 PF03178 CPSF_A: CPSF A subuni 98.1 0.0015 3.2E-08 55.8 20.8 199 18-236 28-262 (321)
345 KOG3621 WD40 repeat-containing 98.1 0.00056 1.2E-08 61.2 18.1 122 64-199 32-155 (726)
346 PF04053 Coatomer_WDAD: Coatom 98.1 0.00077 1.7E-08 59.4 18.3 147 115-284 27-174 (443)
347 COG3391 Uncharacterized conser 98.0 0.005 1.1E-07 53.8 22.7 198 122-346 32-240 (381)
348 KOG3617 WD40 and TPR repeat-co 98.0 1.5E-05 3.3E-10 72.2 7.0 108 173-284 20-132 (1416)
349 PF08596 Lgl_C: Lethal giant l 98.0 0.0019 4.2E-08 56.1 19.6 273 19-334 4-325 (395)
350 PF06433 Me-amine-dh_H: Methyl 97.9 0.0034 7.5E-08 52.3 18.9 199 69-284 98-321 (342)
351 KOG2395 Protein involved in va 97.9 0.00022 4.7E-09 61.7 12.0 143 179-344 344-499 (644)
352 COG3204 Uncharacterized protei 97.9 0.0062 1.3E-07 49.3 18.6 172 61-249 81-271 (316)
353 KOG2444 WD40 repeat protein [G 97.9 3E-05 6.5E-10 59.7 5.5 143 183-348 33-180 (238)
354 PRK11138 outer membrane biogen 97.9 0.0032 6.9E-08 55.4 18.8 182 77-284 120-313 (394)
355 PF03178 CPSF_A: CPSF A subuni 97.8 0.0062 1.3E-07 52.0 19.8 135 143-284 62-203 (321)
356 PF02897 Peptidase_S9_N: Proly 97.8 0.013 2.9E-07 52.0 22.1 198 122-345 125-357 (414)
357 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0016 3.4E-08 51.4 13.7 125 129-262 19-145 (354)
358 smart00320 WD40 WD40 repeats. 97.8 6.2E-05 1.3E-09 40.9 4.7 39 304-343 2-40 (40)
359 KOG4640 Anaphase-promoting com 97.8 0.00012 2.5E-09 64.5 8.1 90 170-262 22-115 (665)
360 PF05694 SBP56: 56kDa selenium 97.8 0.022 4.8E-07 49.1 24.2 233 41-285 36-344 (461)
361 PF00780 CNH: CNH domain; Int 97.8 0.018 3.8E-07 48.0 24.9 227 25-284 4-256 (275)
362 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0055 1.2E-07 42.1 14.0 99 214-340 8-109 (111)
363 KOG4640 Anaphase-promoting com 97.7 0.00021 4.6E-09 63.0 9.0 70 211-284 23-93 (665)
364 KOG3621 WD40 repeat-containing 97.7 0.00036 7.8E-09 62.3 10.3 113 170-284 35-155 (726)
365 smart00320 WD40 WD40 repeats. 97.7 0.00012 2.5E-09 39.7 5.1 38 243-281 3-40 (40)
366 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0035 7.6E-08 43.0 12.0 102 123-235 2-110 (111)
367 PF15390 DUF4613: Domain of un 97.6 0.0024 5.3E-08 56.4 13.5 151 120-284 19-187 (671)
368 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.0068 1.5E-07 48.0 13.8 101 180-284 23-124 (354)
369 PF08596 Lgl_C: Lethal giant l 97.5 0.021 4.5E-07 49.8 18.3 205 122-348 3-293 (395)
370 PF04841 Vps16_N: Vps16, N-ter 97.5 0.057 1.2E-06 47.7 22.2 183 66-264 81-271 (410)
371 PRK13616 lipoprotein LpqB; Pro 97.5 0.036 7.8E-07 51.1 19.9 152 121-284 350-526 (591)
372 COG3386 Gluconolactonase [Carb 97.5 0.024 5.3E-07 47.5 17.4 196 126-345 30-243 (307)
373 KOG2395 Protein involved in va 97.4 0.0081 1.8E-07 52.4 13.9 139 135-284 347-501 (644)
374 PRK13616 lipoprotein LpqB; Pro 97.4 0.021 4.5E-07 52.7 17.4 188 66-277 350-562 (591)
375 KOG2444 WD40 repeat protein [G 97.3 0.00065 1.4E-08 52.5 6.1 140 135-284 32-178 (238)
376 COG3490 Uncharacterized protei 97.3 0.045 9.6E-07 44.3 16.3 160 170-336 69-246 (366)
377 PF05694 SBP56: 56kDa selenium 97.3 0.098 2.1E-06 45.3 19.5 207 136-346 90-343 (461)
378 PF14583 Pectate_lyase22: Olig 97.2 0.026 5.5E-07 48.2 15.1 164 61-239 183-381 (386)
379 COG3204 Uncharacterized protei 97.2 0.042 9.2E-07 44.6 15.2 169 166-345 83-263 (316)
380 cd00216 PQQ_DH Dehydrogenases 97.2 0.12 2.7E-06 46.9 20.2 107 142-249 174-328 (488)
381 PF14870 PSII_BNR: Photosynthe 97.2 0.11 2.5E-06 43.4 23.1 189 124-342 107-301 (302)
382 PF05096 Glu_cyclase_2: Glutam 97.1 0.098 2.1E-06 42.3 18.7 186 61-272 38-250 (264)
383 PF15390 DUF4613: Domain of un 97.1 0.031 6.7E-07 49.7 14.6 150 169-344 20-185 (671)
384 COG3490 Uncharacterized protei 97.1 0.11 2.3E-06 42.2 21.7 229 35-284 40-311 (366)
385 KOG2079 Vacuolar assembly/sort 97.1 0.0023 5E-08 60.2 8.1 99 223-344 101-202 (1206)
386 PRK10115 protease 2; Provision 96.9 0.41 9E-06 45.4 27.7 199 66-283 127-344 (686)
387 PF07995 GSDH: Glucose / Sorbo 96.9 0.25 5.3E-06 42.4 23.4 243 67-340 3-330 (331)
388 PF00780 CNH: CNH domain; Int 96.8 0.25 5.5E-06 41.0 24.1 145 75-240 5-166 (275)
389 KOG2247 WD40 repeat-containing 96.7 0.00023 4.9E-09 61.1 -1.5 144 170-338 36-181 (615)
390 KOG3630 Nuclear pore complex, 96.7 0.032 7E-07 53.4 11.8 113 170-284 102-229 (1405)
391 PF05096 Glu_cyclase_2: Glutam 96.6 0.27 5.9E-06 39.9 17.0 128 88-229 107-251 (264)
392 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0083 1.8E-07 34.3 5.1 31 314-345 11-41 (47)
393 PF10647 Gmad1: Lipoprotein Lp 96.6 0.3 6.4E-06 40.1 17.3 157 170-340 25-191 (253)
394 KOG2079 Vacuolar assembly/sort 96.6 0.015 3.3E-07 55.1 9.2 99 180-283 99-203 (1206)
395 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0092 2E-07 34.1 5.0 33 169-202 12-44 (47)
396 cd00216 PQQ_DH Dehydrogenases 96.5 0.62 1.4E-05 42.4 20.0 133 144-284 257-425 (488)
397 KOG4499 Ca2+-binding protein R 96.5 0.14 3.1E-06 40.2 12.4 142 66-219 109-264 (310)
398 KOG4441 Proteins containing BT 96.4 0.33 7.2E-06 44.9 16.7 212 92-344 302-545 (571)
399 KOG4499 Ca2+-binding protein R 96.4 0.35 7.6E-06 38.1 17.9 134 170-325 110-264 (310)
400 PHA02713 hypothetical protein; 96.4 0.29 6.3E-06 45.3 16.1 143 179-346 351-534 (557)
401 COG5167 VID27 Protein involved 96.2 0.11 2.4E-06 45.6 11.7 144 179-345 478-632 (776)
402 COG3823 Glutamine cyclotransfe 96.2 0.33 7.1E-06 37.6 12.8 163 91-272 68-248 (262)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 1 2.2E-05 39.6 24.6 72 253-346 308-399 (415)
404 KOG2280 Vacuolar assembly/sort 95.8 1.6 3.4E-05 40.7 18.0 177 91-284 64-247 (829)
405 PF12234 Rav1p_C: RAVE protein 95.7 0.59 1.3E-05 43.2 14.5 115 213-343 34-154 (631)
406 TIGR02604 Piru_Ver_Nterm putat 95.5 0.63 1.4E-05 40.6 13.7 143 121-274 14-204 (367)
407 PF10647 Gmad1: Lipoprotein Lp 95.4 1.3 2.8E-05 36.4 21.5 146 122-274 25-186 (253)
408 TIGR03118 PEPCTERM_chp_1 conse 95.3 1.4 3E-05 36.5 23.7 206 67-284 24-280 (336)
409 PF02333 Phytase: Phytase; In 95.3 1.8 3.8E-05 37.5 15.6 150 180-346 68-238 (381)
410 PHA02713 hypothetical protein; 95.3 0.76 1.6E-05 42.6 14.0 89 191-284 433-534 (557)
411 KOG3630 Nuclear pore complex, 95.2 0.14 3.1E-06 49.3 9.2 149 66-223 101-258 (1405)
412 PF14870 PSII_BNR: Photosynthe 95.1 1.7 3.8E-05 36.5 17.1 157 61-236 140-301 (302)
413 PRK10115 protease 2; Provision 95.1 3.3 7.2E-05 39.5 28.7 247 18-284 128-395 (686)
414 PF12234 Rav1p_C: RAVE protein 95.1 0.62 1.3E-05 43.1 12.5 107 174-284 35-157 (631)
415 TIGR02604 Piru_Ver_Nterm putat 95.0 1.7 3.8E-05 37.9 15.1 99 170-272 15-142 (367)
416 PF10168 Nup88: Nuclear pore c 95.0 0.96 2.1E-05 42.9 14.1 80 169-249 85-189 (717)
417 KOG2377 Uncharacterized conser 95.0 1.5 3.3E-05 38.3 13.7 152 125-283 27-185 (657)
418 COG5167 VID27 Protein involved 94.9 0.74 1.6E-05 40.7 11.8 96 184-284 531-633 (776)
419 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.9 3.1 6.8E-05 38.3 25.0 71 174-245 239-338 (527)
420 KOG1916 Nuclear protein, conta 94.8 0.089 1.9E-06 49.3 6.6 183 89-284 109-324 (1283)
421 PF10313 DUF2415: Uncharacteri 94.6 0.17 3.7E-06 28.1 4.9 32 121-152 1-34 (43)
422 KOG1897 Damage-specific DNA bi 94.3 5.5 0.00012 38.5 24.9 179 136-343 686-896 (1096)
423 PF08728 CRT10: CRT10; InterP 94.2 4.6 0.0001 38.1 16.1 116 211-344 103-245 (717)
424 PF02333 Phytase: Phytase; In 94.2 3.4 7.3E-05 35.8 20.1 200 28-248 67-299 (381)
425 TIGR03118 PEPCTERM_chp_1 conse 94.1 2.9 6.2E-05 34.8 18.7 199 122-345 24-279 (336)
426 PF10313 DUF2415: Uncharacteri 94.1 0.21 4.6E-06 27.7 4.5 33 316-348 2-37 (43)
427 PF14727 PHTB1_N: PTHB1 N-term 94.0 4.2 9E-05 36.0 29.5 167 17-197 25-203 (418)
428 KOG2377 Uncharacterized conser 93.9 1.8 3.8E-05 37.9 11.8 101 211-334 69-173 (657)
429 PHA03098 kelch-like protein; P 93.8 3 6.5E-05 38.6 14.6 60 179-240 342-415 (534)
430 KOG4460 Nuclear pore complex, 93.8 1.4 2.9E-05 39.3 11.2 92 254-347 105-200 (741)
431 PF10168 Nup88: Nuclear pore c 93.5 3.3 7.1E-05 39.5 14.2 90 253-346 85-180 (717)
432 PF12657 TFIIIC_delta: Transcr 93.4 1.3 2.9E-05 33.8 9.8 31 316-346 87-122 (173)
433 PF08728 CRT10: CRT10; InterP 93.2 7.6 0.00016 36.7 15.8 112 170-282 102-245 (717)
434 KOG2247 WD40 repeat-containing 93.2 0.014 3.1E-07 50.5 -1.5 141 122-275 36-180 (615)
435 PF07569 Hira: TUP1-like enhan 93.1 0.51 1.1E-05 37.7 7.2 62 176-239 18-95 (219)
436 TIGR03606 non_repeat_PQQ dehyd 93.0 6.4 0.00014 35.2 16.9 138 172-332 33-246 (454)
437 PF07995 GSDH: Glucose / Sorbo 92.7 5.3 0.00011 34.3 13.4 103 122-228 3-132 (331)
438 PRK13684 Ycf48-like protein; P 92.7 6 0.00013 34.0 15.8 151 120-283 172-331 (334)
439 KOG4460 Nuclear pore complex, 92.4 2.5 5.3E-05 37.8 10.6 74 211-285 106-200 (741)
440 PF12657 TFIIIC_delta: Transcr 92.3 1.3 2.8E-05 33.9 8.3 31 254-284 87-122 (173)
441 KOG4441 Proteins containing BT 92.3 9.7 0.00021 35.5 17.0 141 135-284 383-547 (571)
442 COG5290 IkappaB kinase complex 92.2 5.2 0.00011 37.8 12.9 119 65-196 16-140 (1243)
443 PF13449 Phytase-like: Esteras 92.1 7 0.00015 33.5 21.5 214 121-338 20-311 (326)
444 KOG1900 Nuclear pore complex, 91.7 3.2 6.9E-05 41.3 11.6 154 119-284 77-273 (1311)
445 PHA03098 kelch-like protein; P 91.7 11 0.00024 34.9 15.7 99 179-284 389-512 (534)
446 PF07569 Hira: TUP1-like enhan 91.1 1.9 4.2E-05 34.4 8.4 73 261-345 19-95 (219)
447 PF07676 PD40: WD40-like Beta 91.1 0.95 2.1E-05 24.4 4.8 31 118-148 6-38 (39)
448 KOG1916 Nuclear protein, conta 91.1 0.28 6E-06 46.3 3.9 135 140-284 108-266 (1283)
449 TIGR02276 beta_rpt_yvtn 40-res 90.9 0.71 1.5E-05 25.3 4.3 39 178-216 1-41 (42)
450 TIGR02276 beta_rpt_yvtn 40-res 90.8 1.5 3.3E-05 23.9 5.6 32 218-250 1-32 (42)
451 COG5290 IkappaB kinase complex 90.6 15 0.00031 35.1 14.0 99 173-274 251-358 (1243)
452 PF07676 PD40: WD40-like Beta 90.4 1.3 2.9E-05 23.8 5.0 32 249-280 5-38 (39)
453 COG4590 ABC-type uncharacteriz 90.1 3.4 7.4E-05 36.2 9.2 156 169-349 221-390 (733)
454 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.0 16 0.00034 33.8 24.2 60 144-203 272-338 (527)
455 COG4590 ABC-type uncharacteriz 90.0 3.3 7.1E-05 36.4 9.1 166 111-285 211-388 (733)
456 PF08801 Nucleoporin_N: Nup133 90.0 9 0.0002 34.2 12.6 31 253-284 190-220 (422)
457 PF14761 HPS3_N: Hermansky-Pud 89.6 8.8 0.00019 30.2 14.4 119 223-346 31-164 (215)
458 PF14655 RAB3GAP2_N: Rab3 GTPa 89.3 3.8 8.2E-05 36.1 9.3 80 169-249 308-407 (415)
459 PF10214 Rrn6: RNA polymerase 89.2 23 0.0005 34.5 26.0 170 63-240 77-277 (765)
460 PF03088 Str_synth: Strictosid 89.1 3.5 7.7E-05 27.4 7.0 53 186-238 33-86 (89)
461 KOG1900 Nuclear pore complex, 88.4 18 0.0004 36.4 13.7 151 40-199 97-273 (1311)
462 PF11635 Med16: Mediator compl 88.1 27 0.00058 34.0 20.9 84 253-340 260-345 (753)
463 PF14761 HPS3_N: Hermansky-Pud 88.0 12 0.00025 29.6 12.3 38 89-134 36-73 (215)
464 KOG1520 Predicted alkaloid syn 87.9 9.8 0.00021 32.8 10.4 108 169-280 115-247 (376)
465 PF14781 BBS2_N: Ciliary BBSom 87.8 8.4 0.00018 27.8 12.1 107 174-284 4-126 (136)
466 PF03022 MRJP: Major royal jel 87.3 16 0.00035 30.6 13.2 30 316-346 187-216 (287)
467 PF11715 Nup160: Nucleoporin N 87.1 3.4 7.4E-05 38.3 8.2 37 170-206 216-256 (547)
468 KOG1896 mRNA cleavage and poly 86.5 15 0.00031 36.8 11.7 140 91-239 1065-1213(1366)
469 PHA02790 Kelch-like protein; P 86.4 20 0.00043 32.8 12.5 59 179-240 318-385 (480)
470 PF10433 MMS1_N: Mono-function 85.6 29 0.00063 31.9 23.6 234 24-284 218-477 (504)
471 PF07250 Glyoxal_oxid_N: Glyox 85.0 19 0.00042 29.2 11.1 109 172-284 70-198 (243)
472 PF11715 Nup160: Nucleoporin N 84.4 6.2 0.00013 36.6 8.5 34 254-287 216-252 (547)
473 KOG2280 Vacuolar assembly/sort 84.4 38 0.00083 32.2 14.9 37 211-249 219-255 (829)
474 PF03022 MRJP: Major royal jel 83.2 26 0.00057 29.4 17.0 31 253-284 186-216 (287)
475 PF12768 Rax2: Cortical protei 80.3 33 0.00072 28.6 11.8 92 190-284 16-124 (281)
476 PF01731 Arylesterase: Arylest 79.5 9.7 0.00021 25.2 5.7 31 316-346 55-85 (86)
477 PF10395 Utp8: Utp8 family; I 78.8 60 0.0013 30.7 22.9 195 72-284 34-260 (670)
478 COG1770 PtrB Protease II [Amin 78.5 60 0.0013 30.5 21.8 202 67-284 130-349 (682)
479 PRK13684 Ycf48-like protein; P 78.5 43 0.00093 28.9 25.6 149 170-344 174-330 (334)
480 PRK13613 lipoprotein LpqB; Pro 78.3 61 0.0013 30.5 13.2 157 170-344 364-536 (599)
481 COG5276 Uncharacterized conser 78.1 39 0.00086 28.2 24.5 257 40-344 104-368 (370)
482 smart00036 CNH Domain found in 77.5 43 0.00093 28.4 27.6 111 29-151 14-131 (302)
483 PF01731 Arylesterase: Arylest 77.5 7.8 0.00017 25.6 4.8 30 211-240 56-85 (86)
484 KOG1898 Splicing factor 3b, su 77.2 82 0.0018 31.4 16.5 132 143-284 912-1049(1205)
485 TIGR03032 conserved hypothetic 77.2 36 0.00079 28.8 9.4 50 175-228 209-259 (335)
486 smart00564 PQQ beta-propeller 76.9 4.1 8.9E-05 20.7 2.8 25 181-205 7-31 (33)
487 PLN00033 photosystem II stabil 75.8 57 0.0012 28.9 15.7 150 120-280 238-396 (398)
488 PF13449 Phytase-like: Esteras 75.5 51 0.0011 28.3 20.4 99 123-225 87-230 (326)
489 PF01436 NHL: NHL repeat; Int 75.4 8.2 0.00018 19.0 3.6 23 212-235 5-27 (28)
490 PF14781 BBS2_N: Ciliary BBSom 75.1 29 0.00062 25.1 12.2 119 71-202 4-129 (136)
491 PF14727 PHTB1_N: PTHB1 N-term 74.4 64 0.0014 28.8 23.5 143 87-239 43-204 (418)
492 TIGR03074 PQQ_membr_DH membran 73.9 93 0.002 30.4 20.7 149 136-286 263-480 (764)
493 TIGR02171 Fb_sc_TIGR02171 Fibr 73.1 38 0.00082 33.2 9.7 76 189-264 328-410 (912)
494 KOG1897 Damage-specific DNA bi 72.1 1.1E+02 0.0023 30.4 29.8 107 177-284 496-614 (1096)
495 PF01011 PQQ: PQQ enzyme repea 71.8 7.4 0.00016 20.8 3.1 27 182-208 2-28 (38)
496 KOG3522 Predicted guanine nucl 71.7 35 0.00076 32.8 8.9 79 115-200 621-699 (925)
497 TIGR03074 PQQ_membr_DH membran 70.1 1.1E+02 0.0025 29.8 18.6 68 180-249 260-353 (764)
498 PHA02790 Kelch-like protein; P 69.5 92 0.002 28.5 13.7 95 179-284 362-471 (480)
499 KOG1898 Splicing factor 3b, su 69.0 1.3E+02 0.0028 30.1 15.6 134 189-348 911-1051(1205)
500 KOG2714 SETA binding protein S 68.9 84 0.0018 27.8 10.8 61 182-242 237-309 (465)
No 1
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=100.00 E-value=6.2e-47 Score=289.82 Aligned_cols=346 Identities=55% Similarity=0.921 Sum_probs=290.6
Q ss_pred CCcceeeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEE
Q 018700 3 GGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFS 82 (351)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~ 82 (351)
||..+++|++++|+|+++.+..+.+..+|++||.+++.+|++.+++++++++.+..+.++.|.+.|+.|+-+|.++.+++
T Consensus 1 ~~s~~liyGle~qAR~lT~qtad~d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ila 80 (370)
T KOG1007|consen 1 GDSSGLIYGLEYQARCLTPQTADRDHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILA 80 (370)
T ss_pred CCcccceeeeeeeeeecCccccCccceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred EEeecCCc----ceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC-C
Q 018700 83 TVFSTGES----YGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-N 156 (351)
Q Consensus 83 ~~~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~ 156 (351)
+++..-.| ..+.||.++++.+.....+.+.+..+. .+-+.|.|+.|.|++. -+++-.|..|.+|++..... .
T Consensus 81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~dn~i~l~~l~ess~~v 158 (370)
T KOG1007|consen 81 TVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMDDNNIVLWSLDESSKIV 158 (370)
T ss_pred EEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEeccCceEEEEcccCcchh
Confidence 98763333 358899999877766666677777775 5667999999999888 46666699999999997766 3
Q ss_pred cccccccccCcccceeeeEECCC-CCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCe
Q 018700 157 AQVQSKQSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG 232 (351)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~ 232 (351)
..+......++....++-+|+|. ....+....|+++..||+++..+...+..+| +..+.|+|+.+++|+++++||.
T Consensus 159 aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 159 AEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred eeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 44444444556778889999993 3345555679999999999999999998777 9999999999999999999999
Q ss_pred EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc-------ccccCCcc---c
Q 018700 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE-------SLVESPNQ---R 302 (351)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~---~ 302 (351)
|++||.|..+.+++++.+|..+|.++.|+|....++++++.|..|.+|....-++++.... ....+.++ .
T Consensus 239 vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL 318 (370)
T KOG1007|consen 239 VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL 318 (370)
T ss_pred EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence 9999999989999999999999999999999889999999999999998877654432111 11111111 2
Q ss_pred ccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccccc
Q 018700 303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 350 (351)
Q Consensus 303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 350 (351)
....+.++..|+..|.+++|+...+|+||+-++||++.|=+++++.++
T Consensus 319 ~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~~ky 366 (370)
T KOG1007|consen 319 QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRFLKY 366 (370)
T ss_pred cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChhhhh
Confidence 234567888999999999999999999999999999999999887765
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=307.57 Aligned_cols=280 Identities=21% Similarity=0.333 Sum_probs=251.4
Q ss_pred ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCcce
Q 018700 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYG 92 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d~~ 92 (351)
+.|++..+.++.+...++.|++ .+.+.+|..... .....+.+|...|.++.|+|. +..++++ +.||+
T Consensus 174 d~rPis~~~fS~ds~~laT~sw----sG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~----s~Dgt 242 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSW----SGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATA----SADGT 242 (459)
T ss_pred CCCcceeeEeecCCCeEEEeec----CCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeee----ccCCc
Confidence 5788999999999999999876 578888887775 245778999999999999997 3456554 89999
Q ss_pred EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018700 93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (351)
Q Consensus 93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (351)
+++|+++ +..++..+.+|...|..++|+|+|++ +.+++.|.+-++||+++..... ...||...|.
T Consensus 243 vklw~~~---------~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL-----~QEGHs~~v~ 307 (459)
T KOG0272|consen 243 VKLWKLS---------QETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELL-----LQEGHSKGVF 307 (459)
T ss_pred eeeeccC---------CCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhH-----hhcccccccc
Confidence 9999998 56889999999999999999999995 6667999999999999743322 2347888999
Q ss_pred eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018700 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
+++|+|||..+++|+.|..-+|||++++.++..+. +| |.+|+|+|+|- .++||+.|++++|||+|. ...+.++.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ip 384 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIP 384 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCce-EEeecCCCCcEEEeeecc-cccceecc
Confidence 99999999999999999999999999999999988 67 99999999996 899999999999999997 66799999
Q ss_pred CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCce
Q 018700 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329 (351)
Q Consensus 250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 329 (351)
+|.+-|+.|+|+|....+|+|++.|++++||..+. +.++.++.+|++.|.+++.++++. .
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------~~~~ksLaGHe~kV~s~Dis~d~~-~ 444 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------WSPLKSLAGHEGKVISLDISPDSQ-A 444 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCC-------------------cccchhhcCCccceEEEEeccCCc-e
Confidence 99999999999995559999999999999999999 999999999999999999999999 8
Q ss_pred EEEeeeCCeEEEee
Q 018700 330 FASLSYDGRVVVES 343 (351)
Q Consensus 330 l~s~~~dg~v~vw~ 343 (351)
+++++.|+++++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-44 Score=287.47 Aligned_cols=288 Identities=20% Similarity=0.302 Sum_probs=241.9
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~ 91 (351)
+......+-...++|++.+++.|+ .+..+++|++..+.. .....+|...|.|++|+||++.|+++ +.||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGs----GD~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDgk~iASG----~~dg 179 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGS----GDTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDGKKIASG----SKDG 179 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecC----CCceEEeeccCCCCc---ceeecCCccEEEEEEECCCcchhhcc----ccCC
Confidence 333444555667788888888764 578888888887654 34567899999999999999999984 7999
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC-----CCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS-----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
.|++||... ..+....+.+|...|++++|.|- .+ .+++++.||.|+|||+..+... ....+
T Consensus 180 ~I~lwdpkt--------g~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~-----~~lsg 245 (480)
T KOG0271|consen 180 SIRLWDPKT--------GQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCV-----RTLSG 245 (480)
T ss_pred eEEEecCCC--------CCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEE-----EEecc
Confidence 999999772 23456788999999999999773 34 3556689999999999843222 23347
Q ss_pred cccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC-----------CCCC-----------
Q 018700 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD-----------TKKK----------- 221 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~-----------~~~~----------- 221 (351)
|+.+|+|+.|-- ..++++++.|++|++|+...|.+...+. +| |+.++.+ |.++
T Consensus 246 HT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 246 HTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred CccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 899999999975 3579999999999999999998888887 55 8888776 3232
Q ss_pred -------------cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018700 222 -------------HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (351)
Q Consensus 222 -------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 288 (351)
..+++|++|.++.+|+.....+++..+.+|..-|+.+.|+||+ +++|+++.|.+|++||.++
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t---- 398 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT---- 398 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC----
Confidence 2599999999999999888788999999999999999999999 9999999999999999999
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
++.+.+|.+|-..|..++|+.|.+ +|++|+.|.++++|++++.
T Consensus 399 ---------------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 399 ---------------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ---------------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee
Confidence 999999999999999999999988 9999999999999999763
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-44 Score=283.19 Aligned_cols=283 Identities=19% Similarity=0.301 Sum_probs=240.8
Q ss_pred ccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC-----CCCceEEEEe
Q 018700 11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-----FDQRIFSTVF 85 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-----~~~~l~~~~~ 85 (351)
.++....|+..++++||+.+++.|. .+|.|.+|+-.. +...-..+.+|...|.+++|.| ..++|++
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~----~dg~I~lwdpkt--g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las--- 222 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGS----KDGSIRLWDPKT--GQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS--- 222 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccc----cCCeEEEecCCC--CCcccccccCcccceeEEeecccccCCCccceec---
Confidence 3444567899999999999999885 578998887444 4456678899999999999976 3455555
Q ss_pred ecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018700 86 STGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165 (351)
Q Consensus 86 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 165 (351)
++.||.++|||+. ...++..+.+|+.+|+|++|--+|- +++++.|++|++|+...+.... ...
T Consensus 223 -~skDg~vrIWd~~---------~~~~~~~lsgHT~~VTCvrwGG~gl--iySgS~DrtIkvw~a~dG~~~r-----~lk 285 (480)
T KOG0271|consen 223 -SSKDGSVRIWDTK---------LGTCVRTLSGHTASVTCVRWGGEGL--IYSGSQDRTIKVWRALDGKLCR-----ELK 285 (480)
T ss_pred -ccCCCCEEEEEcc---------CceEEEEeccCccceEEEEEcCCce--EEecCCCceEEEEEccchhHHH-----hhc
Confidence 4899999999998 6789999999999999999987664 7777999999999998643332 334
Q ss_pred CcccceeeeEEC-----------CCCC-------------------------cEEEeecCCeEEEEEcccCC-cCceeec
Q 018700 166 GMLHYLSGGAWD-----------PHDV-------------------------NAVAATCESSVQFWDLRSMG-KTNSIEH 208 (351)
Q Consensus 166 ~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~d~~i~iwd~~~~~-~~~~~~~ 208 (351)
+|...|+.++.+ |.++ .|++++.|.++.+|+....+ ++..+.
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt- 364 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT- 364 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-
Confidence 666678877655 3333 39999999999999987654 444444
Q ss_pred ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
+| |+.+.|+||++ ++++++.|..|++||.++ ++.+.+|.+|-.+|+.++|+.|. ++|++|+.|.++++||+++
T Consensus 365 gHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~t- 440 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRT- 440 (480)
T ss_pred chhhheeeEEECCCcc-EEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeee-
Confidence 66 99999999999 899999999999999998 88899999999999999999999 9999999999999999999
Q ss_pred CCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
.++...+.+|.+.|.+++|+|||+ .+++|+.|..+++|.
T Consensus 441 ------------------kKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 ------------------KKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred ------------------eeecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 888889999999999999999999 899999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.2e-44 Score=285.97 Aligned_cols=248 Identities=20% Similarity=0.297 Sum_probs=221.4
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCC-CCcEEEEe
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG-RHDKLVSI 140 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~ 140 (351)
.+-..+|..+.|++++..|+++ +-+|.++||+.+ +...+.++.+|.+.|.++.|+|.. ...+++++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~----swsG~~kvW~~~---------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATG----SWSGLVKVWSVP---------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEe----ecCCceeEeecC---------CcceeEEEeccccceeeEEEccCCCccceeeec
Confidence 4567899999999999998885 799999999998 778899999999999999999983 33366669
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD 217 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~ 217 (351)
.||++++|++.+..... ...+|...|..++|+|+|++|++++.|.+-++||++++..+...+ +| |.+++|+
T Consensus 239 ~Dgtvklw~~~~e~~l~-----~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~ 312 (459)
T KOG0272|consen 239 ADGTVKLWKLSQETPLQ-----DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQ 312 (459)
T ss_pred cCCceeeeccCCCcchh-----hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEec
Confidence 99999999999643332 334677899999999999999999999999999999987766655 77 9999999
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 297 (351)
|||. ++++|+.|..-+|||+|+ ++++..+.+|..+|.+|.|+|+| ..||||+.|++++|||++.
T Consensus 313 ~DGS-L~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~------------- 376 (459)
T KOG0272|consen 313 PDGS-LAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRM------------- 376 (459)
T ss_pred CCCc-eeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecc-------------
Confidence 9999 999999999999999998 77899999999999999999999 9999999999999999998
Q ss_pred CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccccc
Q 018700 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 350 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 350 (351)
..++.++.+|.+.|..+.|+|....+|+|++.|++++||.-....+-
T Consensus 377 ------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 377 ------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 78899999999999999999965569999999999999998876543
No 6
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.4e-41 Score=273.28 Aligned_cols=329 Identities=20% Similarity=0.333 Sum_probs=260.3
Q ss_pred eccccceeEeeeecC-------CCCcceEEEeeeeeC-CCCEEEEEEeC--C------------C----------CCeEE
Q 018700 10 YGLKYQARCISDVKA-------DTDHTSFLTGTLSLK-EENEVHLLRLS--S------------G----------GTELI 57 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~-~~~~i~~~~~~--~------------~----------~~~~~ 57 (351)
..++.+...+.|++. .-..+||++|+.+.+ .++.+.+-++. . + ...+.
T Consensus 37 h~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~ 116 (422)
T KOG0264|consen 37 HALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVE 116 (422)
T ss_pred ccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccccccCCccccccceE
Confidence 356666666666653 123479999999998 56666665422 1 0 11344
Q ss_pred EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCC-CcceeeeeeeccccceeEEEecCCCCCcE
Q 018700 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS-PQLERIAALDAHVGKINCVLWWSSGRHDK 136 (351)
Q Consensus 58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 136 (351)
......|++.|+.+++.|+...|+++ .+..+.|.|||.......... ....+-..+.+|...-.+++|++.....+
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt---~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVAT---KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEe---cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 55667899999999999999999997 578889999998854322211 13455668899999889999999888768
Q ss_pred EEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEccc--CCcCceeecce-
Q 018700 137 LVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRS--MGKTNSIEHAH- 210 (351)
Q Consensus 137 ~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~--~~~~~~~~~~~- 210 (351)
++++.|++|++||++...... ........+|...|..++|++.... +.+++.|+.+.|||+|+ .++..... +|
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~ 272 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHS 272 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccC
Confidence 888999999999998655421 2223345688899999999997655 55678999999999995 33333333 55
Q ss_pred --eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018700 211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (351)
Q Consensus 211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 288 (351)
++|++|+|.+.++||+|+.|++|.+||+|+..+++.++.+|...|.+|.|+|.....||+++.|+.+.+||+..-+.+
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999999999999999999999999999999999999999999999999999999899999999999999999875554
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+.+...++.. .++++...+|...|..++|+|+.++.|+|.+.|+.+.||++...
T Consensus 353 q~~eda~dgp-----pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGP-----PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCC-----cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 4423333322 57788999999999999999999999999999999999999753
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.3e-40 Score=252.18 Aligned_cols=287 Identities=16% Similarity=0.229 Sum_probs=244.8
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~ 91 (351)
++.....|..+.+.++..+++-++ +++.+.+|+-...++. ..+.-....|..++|+|.++.+++ ||-|+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaS----qDGklIvWDs~TtnK~---haipl~s~WVMtCA~sPSg~~VAc----GGLdN 119 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSAS----QDGKLIVWDSFTTNKV---HAIPLPSSWVMTCAYSPSGNFVAC----GGLDN 119 (343)
T ss_pred ecccccceeeeEecCCcCeEEeec----cCCeEEEEEcccccce---eEEecCceeEEEEEECCCCCeEEe----cCcCc
Confidence 334455678888999998888765 6899999998876542 223345689999999999988877 58999
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v 171 (351)
...||++.... .....+..+.+.+|++-+.|+.|.+|+. +++++.|.+..+||++++.+...+ .+|...|
T Consensus 120 ~Csiy~ls~~d---~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV 189 (343)
T KOG0286|consen 120 KCSIYPLSTRD---AEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVF-----HGHTGDV 189 (343)
T ss_pred eeEEEeccccc---ccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEe-----cCCcccE
Confidence 99999998321 1223355677899999999999999877 899999999999999986554433 3788899
Q ss_pred eeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018700 172 SGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (351)
Q Consensus 172 ~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (351)
.+++++| +++.+++|+.|+..++||++.+.+++.|. +| |+++.|.|+|. -|++|++|++.++||+|. .+.+..
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRa-D~~~a~ 266 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRA-DQELAV 266 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCC-eeeecCCCceeEEEeecC-CcEEee
Confidence 9999999 88999999999999999999999999998 66 99999999998 799999999999999997 666766
Q ss_pred eeC--CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018700 248 LPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (351)
Q Consensus 248 ~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (351)
+.. -..+|++++|+..| ++|++|..|.++.+||.-. ++.+..+.+|++.|.++..+||
T Consensus 267 ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk-------------------~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK-------------------GERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred eccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccc-------------------cceEEEeeccCCeeEEEEECCC
Confidence 652 33689999999999 9999999999999999988 8999999999999999999999
Q ss_pred CCceEEEeeeCCeEEEee
Q 018700 326 EPWIFASLSYDGRVVVES 343 (351)
Q Consensus 326 ~~~~l~s~~~dg~v~vw~ 343 (351)
|. .+++|++|..+|||.
T Consensus 327 G~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GM-AVATGSWDSTLRIWA 343 (343)
T ss_pred Cc-EEEecchhHheeecC
Confidence 98 899999999999994
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-39 Score=247.89 Aligned_cols=289 Identities=16% Similarity=0.275 Sum_probs=233.0
Q ss_pred ccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe--EEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018700 11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG 88 (351)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~ 88 (351)
.++....++..++..+....+++.. ..+..+.+|++..+..+ ...+.+.||...|..+..++++++.+++ +
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sa---srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~----s 82 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSA---SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA----S 82 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEc---ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec----c
Confidence 3555677788888777766666542 35678888998876432 3457889999999999999999998885 8
Q ss_pred CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018700 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (351)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 168 (351)
.|+++++||+. .++..+.|.+|...|.+++|+++.+. +++++.|.+|++|+..... .... ....+.
T Consensus 83 wD~~lrlWDl~---------~g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~c-k~t~---~~~~~~ 148 (315)
T KOG0279|consen 83 WDGTLRLWDLA---------TGESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVC-KYTI---HEDSHR 148 (315)
T ss_pred ccceEEEEEec---------CCcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccE-EEEE---ecCCCc
Confidence 99999999999 67888999999999999999999985 7888999999999987422 1111 111236
Q ss_pred cceeeeEECCC--CCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018700 169 HYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (351)
Q Consensus 169 ~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (351)
..|.++.|+|+ ..+|+.++.|++|++||+++.+....+. +| ++.++++|||. ++++|+.||.+.+||++. ++
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~-~k 225 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE-GK 225 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccC-Cc
Confidence 69999999998 6789999999999999999988777776 55 99999999998 999999999999999997 66
Q ss_pred ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec---------ccc
Q 018700 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS---------DYE 314 (351)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 314 (351)
.+..+. |...|.+++|+|+. ..|+ +..+..|+|||+.. ...+..++ ...
T Consensus 226 ~lysl~-a~~~v~sl~fspnr-ywL~-~at~~sIkIwdl~~-------------------~~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNR-YWLC-AATATSIKIWDLES-------------------KAVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred eeEecc-CCCeEeeEEecCCc-eeEe-eccCCceEEEeccc-------------------hhhhhhccccccccccccCC
Confidence 677765 78999999999986 4444 45556699999998 44444432 112
Q ss_pred ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 315 DSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
....+++|+++|+ .|.+|-.|+.|++|.+..
T Consensus 284 ~~clslaws~dG~-tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 284 PICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence 3457899999999 799999999999999864
No 9
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-40 Score=248.27 Aligned_cols=280 Identities=22% Similarity=0.329 Sum_probs=235.4
Q ss_pred ceEEEee---eeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC
Q 018700 29 TSFLTGT---LSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL 105 (351)
Q Consensus 29 ~~~~~g~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~ 105 (351)
.|+++++ +.+...+.+.++++.+..+ +....-+.-++.+.+++|+++....+.++ ..||+++|||+..
T Consensus 22 nrLavAt~q~yGl~G~G~L~ile~~~~~g-i~e~~s~d~~D~LfdV~Wse~~e~~~~~a---~GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 22 NRLAVATAQHYGLAGNGRLFILEVTDPKG-IQECQSYDTEDGLFDVAWSENHENQVIAA---SGDGSLRLFDLTM----- 92 (311)
T ss_pred chhheeehhhcccccCceEEEEecCCCCC-eEEEEeeecccceeEeeecCCCcceEEEE---ecCceEEEeccCC-----
Confidence 4455554 2345678999999875444 33344455678999999999888777664 7899999999763
Q ss_pred CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEE
Q 018700 106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAV 184 (351)
Q Consensus 106 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 184 (351)
...++..++.|+.+|.++.|++..+..+++++.|++|++|+...++.... ..+|...|+..+|+|... .++
T Consensus 93 ---~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-----f~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 93 ---PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-----FNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred ---CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-----ecCCccEEEEEecCCCCCCeEE
Confidence 45789999999999999999998887788889999999999986444333 446888999999999754 566
Q ss_pred EeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018700 185 AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (351)
Q Consensus 185 ~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 261 (351)
+++.|+++++||++..-....++ .| +.++.|+....++++||+.|+.|+.||+|+...|+.++.+|.-.|..++|+
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 77899999999999765555555 44 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018700 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341 (351)
Q Consensus 262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v 341 (351)
|....+|++++.|-+++|||... ...++.+...|++-|.++.|++-.+..+|+++.|+.++|
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~------------------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPER------------------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred cchhhHhhhccccceEEeccccc------------------chhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence 99888999999999999999986 156777888999999999999977779999999999999
Q ss_pred eec
Q 018700 342 ESV 344 (351)
Q Consensus 342 w~~ 344 (351)
|+.
T Consensus 306 w~p 308 (311)
T KOG0277|consen 306 WNP 308 (311)
T ss_pred ecc
Confidence 984
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=243.33 Aligned_cols=267 Identities=12% Similarity=0.238 Sum_probs=224.7
Q ss_pred eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018700 38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD 117 (351)
Q Consensus 38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (351)
.+.+..|++|+.... .....+....+.|+.+...|+++.|+++ ....||+||+.. ....++.++.
T Consensus 16 A~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S-------~np~Pv~t~e 80 (311)
T KOG0315|consen 16 AGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNS-------NNPNPVATFE 80 (311)
T ss_pred ccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhc-----cCCeeEEEEccC-------CCCCceeEEe
Confidence 356778877776654 3555555555899999999999999886 456899999983 2445899999
Q ss_pred ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018700 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 197 (351)
+|+..|+++.|..+|+. ++++++||+++|||++.......+ .|..+|+++..+|+...|+++..+|.|++||+
T Consensus 81 ~h~kNVtaVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 81 GHTKNVTAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred ccCCceEEEEEeecCeE-EEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 99999999999999996 778899999999999963322222 34459999999999999999999999999999
Q ss_pred ccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC-----CcceeEeeCCCCceeEEEecCCCCCeEE
Q 018700 198 RSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-----KAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (351)
Q Consensus 198 ~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 269 (351)
.+..+...+.+.. +.++...|+|. +++.+.+.|+.++|++-.. -.|+..++.|++-+..+.+||++ .+|+
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~la 231 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLA 231 (311)
T ss_pred cCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEE
Confidence 9887666655333 99999999999 7888999999999998642 24677889999999999999999 9999
Q ss_pred EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 270 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+++.|.+++||+.... .+.-..+.+|...+++.+||.+++ +|++++.|+.+++|+++..
T Consensus 232 t~ssdktv~iwn~~~~------------------~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDF------------------FKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAG 290 (311)
T ss_pred eecCCceEEEEecCCc------------------eeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccC
Confidence 9999999999999871 255567789999999999999999 8999999999999999754
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-39 Score=244.62 Aligned_cols=254 Identities=17% Similarity=0.264 Sum_probs=213.8
Q ss_pred EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018700 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD 135 (351)
Q Consensus 56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 135 (351)
.....+.+|++.|..++..+.+..++.. .+.|.++.+|++... +..-+.+++.+.+|...|..+..+++|++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~s---asrDk~ii~W~L~~d----d~~~G~~~r~~~GHsH~v~dv~~s~dg~~- 77 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVS---ASRDKTIIVWKLTSD----DIKYGVPVRRLTGHSHFVSDVVLSSDGNF- 77 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEE---cccceEEEEEEeccC----ccccCceeeeeeccceEecceEEccCCce-
Confidence 3446788999999999999987777765 489999999999842 34456789999999999999999999995
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-e--eE
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H--VR 212 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~--v~ 212 (351)
+++++.|+++++||+.+++.... +.+|...|.+++|+||.+.+++|+.|.+|.+|+.-........... . |.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~-----f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRR-----FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEeccccceEEEEEecCCcEEEE-----EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 77779999999999998643332 2367889999999999999999999999999998855433333333 3 99
Q ss_pred EEEcCCCC-CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018700 213 NVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (351)
Q Consensus 213 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 291 (351)
|+.|+|.. ..+|++++.|++|++||+++ .+....+.+|++.++.++++||| .+.++|+.||.+.+||++.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~------- 223 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE------- 223 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC-------
Confidence 99999994 23899999999999999998 66788899999999999999999 9999999999999999998
Q ss_pred CcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++.+..+ .|...|.+++|+|+.. .+....+..|+|||+++
T Consensus 224 ------------~k~lysl-~a~~~v~sl~fspnry--wL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 224 ------------GKNLYSL-EAFDIVNSLCFSPNRY--WLCAATATSIKIWDLES 263 (315)
T ss_pred ------------CceeEec-cCCCeEeeEEecCCce--eEeeccCCceEEEeccc
Confidence 7887777 5678899999999864 44445566799999975
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=265.08 Aligned_cols=279 Identities=18% Similarity=0.273 Sum_probs=236.6
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
...|..+.+.|++.|+++|+. .+.+.+|+... ......+..|...|.++.|++++.++++ |+.+|.|++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~----SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~gG~iKy 164 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQ----SGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMIS----GDKGGMIKY 164 (464)
T ss_pred ccceeeEEEcCCCceeEeecc----cccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEE----cCCCceEEe
Confidence 446677888899999999974 57777776532 2222445689999999999999999998 489999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (351)
|+.. ...++.+..|. ..|++++|+|+... ++++++||+|+|||.........+ .+|.-.|.++
T Consensus 165 Wqpn----------mnnVk~~~ahh~eaIRdlafSpnDsk-F~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksv 228 (464)
T KOG0284|consen 165 WQPN----------MNNVKIIQAHHAEAIRDLAFSPNDSK-FLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSV 228 (464)
T ss_pred cccc----------hhhhHHhhHhhhhhhheeccCCCCce-eEEecCCCeEEEEeccCCchhhee-----ccCCCCccee
Confidence 9975 45556666655 99999999997774 888899999999999865443333 3677789999
Q ss_pred EECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH 251 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (351)
+|+|....+++++.|..|++||.++++++.++. .| |..+.|+|++. +|++++.|..+++||+|. .+.+.++++|
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~-mkEl~~~r~H 305 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT-MKELFTYRGH 305 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCC-eeEEccCCceEEEEehhH-hHHHHHhhcc
Confidence 999999999999999999999999999999887 44 99999999996 899999999999999996 5578899999
Q ss_pred CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCceE
Q 018700 252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIF 330 (351)
Q Consensus 252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l 330 (351)
...|+++.|+|-.+.+|.+|+.||.|..|.+.. .+++.. -.+|...|++++|+|-|. +|
T Consensus 306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~-------------------~~p~~~i~~AHd~~iwsl~~hPlGh-il 365 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL-------------------EEPLGEIPPAHDGEIWSLAYHPLGH-IL 365 (464)
T ss_pred hhhheeeccccccccceeeccCCCceEEEeccc-------------------cccccCCCcccccceeeeeccccce-eE
Confidence 999999999999989999999999999999985 344433 357999999999999998 99
Q ss_pred EEeeeCCeEEEeec
Q 018700 331 ASLSYDGRVVVESV 344 (351)
Q Consensus 331 ~s~~~dg~v~vw~~ 344 (351)
++|+.|.++++|.=
T Consensus 366 ~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTR 379 (464)
T ss_pred eecCCCcceeeecc
Confidence 99999999999974
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.1e-39 Score=278.29 Aligned_cols=251 Identities=16% Similarity=0.251 Sum_probs=217.3
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc----------C-C-----------CCCCcceeeeeeecc
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY----------G-Q-----------LNSPQLERIAALDAH 119 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~----------~-~-----------~~~~~~~~~~~~~~h 119 (351)
..-...+.|..|++++..|+. |-.|..|++|.+.... . . .+........++.+|
T Consensus 375 ~nt~~~v~ca~fSddssmlA~----Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLAC----GFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEcCCcceeEeecCCcchhhc----cccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 334478899999999986666 4588899999987310 0 0 011122344568899
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 199 (351)
.++|..+.|+|+.+. ++.++.|++|++|.+.+.... ....+|..+|+.+.|+|.|-++++++.|++-++|....
T Consensus 451 ~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~-----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCL-----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred CCceeeeeecccccc-eeeccCCcceeeeecccceeE-----EEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 999999999999994 778899999999999963222 22347889999999999999999999999999999998
Q ss_pred CCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018700 200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (351)
Q Consensus 200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 276 (351)
..+.+.+. +| +.|+.|+|+.. ++++|+.|.++|+||..+ +..++.|.+|.++|.+++|+|+| ++|++|+.|+.
T Consensus 525 ~~PlRifa-ghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~ 600 (707)
T KOG0263|consen 525 NKPLRIFA-GHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGL 600 (707)
T ss_pred CCchhhhc-ccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCC-ceEeecccCCc
Confidence 88887777 66 99999999998 799999999999999998 77899999999999999999999 99999999999
Q ss_pred EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
|++||+.. +.++..+.+|++.|.++.|+.+|. +||+++.|++|++||+..
T Consensus 601 I~iWDl~~-------------------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 601 IKIWDLAN-------------------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEEcCC-------------------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence 99999999 899999999999999999999999 999999999999999865
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=241.47 Aligned_cols=249 Identities=17% Similarity=0.229 Sum_probs=216.3
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
+.+.+|.++|.++.|+++.++|+++ +.||.+.|||.- +...++.+......|..++|+|.++. ++.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSa----SqDGklIvWDs~---------TtnK~haipl~s~WVMtCA~sPSg~~-VAc 114 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSA----SQDGKLIVWDSF---------TTNKVHAIPLPSSWVMTCAYSPSGNF-VAC 114 (343)
T ss_pred EEecccccceeeeEecCCcCeEEee----ccCCeEEEEEcc---------cccceeEEecCceeEEEEEECCCCCe-EEe
Confidence 6678999999999999999999996 899999999987 55667777788899999999999993 444
Q ss_pred EecCCcEEEEEcCCCCC-CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 139 SIDEENIFLWSLDCSNK-NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
++-|+...||++.+... ..........+|+..+.++.|.+ +..|++++.|.+..+||+++++....+. +| |.++
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sl 192 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSL 192 (343)
T ss_pred cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEE
Confidence 48899999999985422 22223345678999999999987 5679999999999999999999998888 77 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 294 (351)
+++|...+.+++|+-|+..++||+|. +..+++|.+|+..|++++|.|+| .-+++|+.|++.++||++.
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRa---------- 260 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRA---------- 260 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecC----------
Confidence 99994444999999999999999998 67999999999999999999999 9999999999999999998
Q ss_pred cccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 295 LVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.+.+..+.. -..+|++++||..|+ +|.+|..|..+.+||.-
T Consensus 261 ---------D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 261 ---------DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL 303 (343)
T ss_pred ---------CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc
Confidence 777777753 245799999999999 89999999999999964
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.3e-39 Score=255.64 Aligned_cols=239 Identities=21% Similarity=0.366 Sum_probs=213.2
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
+-.|..+.|.|+|++|+++ +..|.+.+|+.. .......++.|.++|.++.|++++.+ ++++..+|.
T Consensus 96 kc~V~~v~WtPeGRRLltg----s~SGEFtLWNg~---------~fnFEtilQaHDs~Vr~m~ws~~g~w-miSgD~gG~ 161 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTG----SQSGEFTLWNGT---------SFNFETILQAHDSPVRTMKWSHNGTW-MISGDKGGM 161 (464)
T ss_pred ccceeeEEEcCCCceeEee----cccccEEEecCc---------eeeHHHHhhhhcccceeEEEccCCCE-EEEcCCCce
Confidence 4588999999999999996 688999999987 55555667899999999999999995 777788999
Q ss_pred EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC
Q 018700 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK 221 (351)
Q Consensus 145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~ 221 (351)
|++|+.+-. ..+.... .|...|++++|+|++..+++++.||+|+|||....+....+. +| |.+++|+|...
T Consensus 162 iKyWqpnmn--nVk~~~a---hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg 235 (464)
T KOG0284|consen 162 IKYWQPNMN--NVKIIQA---HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG 235 (464)
T ss_pred EEecccchh--hhHHhhH---hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc
Confidence 999998832 2222222 244699999999999999999999999999999888777776 66 99999999988
Q ss_pred cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018700 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ 301 (351)
Q Consensus 222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (351)
++++|+.|..|++||.++ +.++.++..|...|..+.|+|++ ++|+|++.|..++++|+++
T Consensus 236 -LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~----------------- 295 (464)
T KOG0284|consen 236 -LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT----------------- 295 (464)
T ss_pred -eeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH-----------------
Confidence 999999999999999998 88999999999999999999999 9999999999999999998
Q ss_pred cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.+.++++++|...|+++.|+|-...+|++|+.||.|..|.+.
T Consensus 296 --mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 296 --MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred --hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 788999999999999999999888899999999999999987
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.5e-37 Score=265.68 Aligned_cols=299 Identities=18% Similarity=0.323 Sum_probs=237.5
Q ss_pred eeeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC----------------------------CCeEEE
Q 018700 7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG----------------------------GTELIC 58 (351)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~----------------------------~~~~~~ 58 (351)
.+.|..--....+....++++...++.|. .+-.|++|.+.+. ......
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGF----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccc----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 45565554455667777888888777774 3566777776642 112223
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+.+|.++|..+.|+|+.++|+++ ++|+++|+|.+. +...+..+++|..+|+++.|+|.|-+ +++
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlSc----SED~svRLWsl~---------t~s~~V~y~GH~~PVwdV~F~P~GyY-Fat 510 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSC----SEDSSVRLWSLD---------TWSCLVIYKGHLAPVWDVQFAPRGYY-FAT 510 (707)
T ss_pred EEeecCCCceeeeeecccccceeec----cCCcceeeeecc---------cceeEEEecCCCcceeeEEecCCceE-EEe
Confidence 5689999999999999999999985 899999999999 78888899999999999999999985 666
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEE
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD 215 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~ 215 (351)
++.|++-++|..... ...+++ .+|...|.|+.|+|+..++++|+.|.++++||+.+|..++.|. +| |.+++
T Consensus 511 as~D~tArLWs~d~~-~PlRif----aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~ 584 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHN-KPLRIF----AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALA 584 (707)
T ss_pred cCCCceeeeeecccC-Cchhhh----cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEE
Confidence 699999999998852 233333 3677899999999999999999999999999999999988887 67 99999
Q ss_pred cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC-----
Q 018700 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL----- 290 (351)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----- 290 (351)
|+|+|+ +|++|++|+.|.+||+.. +.++..+.+|++.|.++.|+.+| .+|++|+.|.+|++||+........
T Consensus 585 ~Sp~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~ 661 (707)
T KOG0263|consen 585 FSPCGR-YLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHIS 661 (707)
T ss_pred EcCCCc-eEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccc
Confidence 999999 899999999999999997 77899999999999999999999 9999999999999999986433200
Q ss_pred CCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEe
Q 018700 291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333 (351)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 333 (351)
...............++.++..-..+|.++.|....- .|+.|
T Consensus 662 ~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g 703 (707)
T KOG0263|consen 662 TSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG 703 (707)
T ss_pred cccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence 0000000011122456777777777899999988653 45544
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-38 Score=247.22 Aligned_cols=251 Identities=18% Similarity=0.248 Sum_probs=221.8
Q ss_pred EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018700 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 137 (351)
...+.+|..+|+.+-|+|+-...+++ ++|++|++||.. +++....+++|...+..++|+..|+. ++
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~a----s~d~tikv~D~~---------tg~~e~~LrGHt~sv~di~~~a~Gk~-l~ 166 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSA----SEDATIKVFDTE---------TGELERSLRGHTDSVFDISFDASGKY-LA 166 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEe----cCCceEEEEEcc---------chhhhhhhhccccceeEEEEecCccE-EE
Confidence 35677899999999999987666664 799999999998 77889999999999999999999983 66
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
+++.|-.+++||..+.....+ ...+|...|.++.|-|.+.++++++.|.+|+.|++.++.++.++. +| +..+
T Consensus 167 tcSsDl~~~LWd~~~~~~c~k----s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v 241 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFRCIK----SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMV 241 (406)
T ss_pred ecCCccchhheeHHHHHHHHH----HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEE
Confidence 668888899999985322222 233677799999999999999999999999999999999999998 55 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC--------------CCeEEEeeCCCeEEEE
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--------------DGFILSAGTDSTVNLW 280 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~l~s~~~dg~i~iw 280 (351)
..+.||. ++++++.|.++++|-+.+ +++...+..|+.+|-+++|.|.. ..++.+++.|++|++|
T Consensus 242 ~v~~DGt-i~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 242 RVNQDGT-IIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred EecCCee-EEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 9999998 999999999999999997 77788899999999999998732 2599999999999999
Q ss_pred EcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018700 281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS 349 (351)
Q Consensus 281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 349 (351)
|+.+ +.++.++.+|.+.|.+++|+|.|+ +|+++.+|+++++||++....
T Consensus 320 dv~t-------------------g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 320 DVST-------------------GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred eccC-------------------CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEecccee
Confidence 9999 999999999999999999999999 899999999999999986543
No 18
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-36 Score=242.07 Aligned_cols=288 Identities=16% Similarity=0.230 Sum_probs=238.4
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
+.-+..+.+++++..++.++ .+....+|.+..+...-+..++.+|..+|.-+.||||.++|+++ +.+..+.+
T Consensus 224 tdEVWfl~FS~nGkyLAsaS----kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC----g~~e~~~l 295 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASAS----KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC----GFDEVLSL 295 (519)
T ss_pred CCcEEEEEEcCCCeeEeecc----CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec----CchHheee
Confidence 34566678888888888764 45666778887776655668899999999999999999999986 77888999
Q ss_pred EEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018700 96 WQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (351)
||+. ++.....+. +|...+.+++|.|||.. +++|+.|+++..||++.... ...... ....|.++
T Consensus 296 wDv~---------tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~--~~W~gv---r~~~v~dl 360 (519)
T KOG0293|consen 296 WDVD---------TGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNIL--GNWEGV---RDPKVHDL 360 (519)
T ss_pred ccCC---------cchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchh--hccccc---ccceeEEE
Confidence 9998 566655553 34678999999999997 88889999999999984321 111111 11379999
Q ss_pred EECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH 253 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 253 (351)
+..+||+++++.+.|..|++++.++......+...+ ++++..+.+++ ++++.-.+..+++||+.. ...++.+.+|..
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE-NKLVRKYFGHKQ 438 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch-hhHHHHhhcccc
Confidence 999999999999999999999999877666666455 99999999998 777888999999999996 667888888875
Q ss_pred c--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEE
Q 018700 254 W--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA 331 (351)
Q Consensus 254 ~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 331 (351)
. +-.-+|.-..+.++++|++|+.|+||+..+ ++++.++.+|...|++++|+|..+.++|
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCCHHHhh
Confidence 4 444456655558999999999999999999 9999999999999999999999999999
Q ss_pred EeeeCCeEEEeecCcc
Q 018700 332 SLSYDGRVVVESVKPF 347 (351)
Q Consensus 332 s~~~dg~v~vw~~~~~ 347 (351)
++|+||+||||...++
T Consensus 500 SasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCCCeEEEecCCcc
Confidence 9999999999998865
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-35 Score=242.08 Aligned_cols=278 Identities=19% Similarity=0.347 Sum_probs=242.2
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
.+.++.+.++.++..++.|. .++.+++|+.... +...+-.|.++|.++.|+..|.+|+++ +.|+++.+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~----~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~----~vD~ttil 302 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGS----EDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSG----GVDGTTIL 302 (524)
T ss_pred cCCcceEEecCCCCeEEEee----cCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEec----cCCccEEE
Confidence 46788899999999999986 5789988887653 235667799999999999999999995 89999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
||.. ++.....+..|..+-..+.|-.+.. +++++.|+.|+|+.+........+ .+|..+|.++.
T Consensus 303 wd~~---------~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk 366 (524)
T KOG0273|consen 303 WDAH---------TGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALK 366 (524)
T ss_pred Eecc---------CceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCCcceee-----ecccCceEEEE
Confidence 9987 6677778888988888999998887 788889999999999854433322 25778999999
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC--------cEEEEecCCCeEEEEecccCCcc
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK--------HLLVTAADESGIHLWDLRMLKAP 244 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~ 244 (351)
|+|.+..|++++.|++++||.+........+. .| |..+.|+|.|+ ..+++++.|++|++||+.. +.+
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~ 444 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVP 444 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Cce
Confidence 99999999999999999999998888887777 55 99999998764 3688999999999999998 789
Q ss_pred eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
+..|..|+.+|.+++|+|+| +++|+|+.||.|.+|+++. ++.++.+.+. ..|..++|+.
T Consensus 445 i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~-------------------~~l~~s~~~~-~~Ifel~Wn~ 503 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKT-------------------GKLVKSYQGT-GGIFELCWNA 503 (524)
T ss_pred eEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccc-------------------hheeEeecCC-CeEEEEEEcC
Confidence 99999999999999999999 9999999999999999999 8988888764 4599999999
Q ss_pred CCCceEEEeeeCCeEEEeecC
Q 018700 325 REPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~~ 345 (351)
+|. .+..+-.|+.+++-|+.
T Consensus 504 ~G~-kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGD-KLGACASDGSVCVLDLR 523 (524)
T ss_pred CCC-EEEEEecCCCceEEEec
Confidence 998 78888889999999875
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=229.15 Aligned_cols=279 Identities=18% Similarity=0.289 Sum_probs=237.1
Q ss_pred eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018700 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw 96 (351)
-.|..+.++|++..|+.| +.|..|.+|++..+.+.. -.+.+|.++|..+.|.+++..++++ |.|.+|+.|
T Consensus 48 geI~~~~F~P~gs~~aSg----G~Dr~I~LWnv~gdceN~--~~lkgHsgAVM~l~~~~d~s~i~S~----gtDk~v~~w 117 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG----GSDRAIVLWNVYGDCENF--WVLKGHSGAVMELHGMRDGSHILSC----GTDKTVRGW 117 (338)
T ss_pred ceEEEEEECCCCCeEeec----CCcceEEEEeccccccce--eeeccccceeEeeeeccCCCEEEEe----cCCceEEEE
Confidence 345667788988888876 568999999977654433 2345999999999999999999986 899999999
Q ss_pred EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018700 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (351)
|++ +++.++.+++|..-|..+.-+.-|..++.+++.|+++++||+++........... +++++.|
T Consensus 118 D~~---------tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky------qltAv~f 182 (338)
T KOG0265|consen 118 DAE---------TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY------QLTAVGF 182 (338)
T ss_pred ecc---------cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce------eEEEEEe
Confidence 999 7899999999999999998666677544444889999999999755544443333 8999999
Q ss_pred CCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC---CcceeEeeC
Q 018700 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML---KAPIQELPG 250 (351)
Q Consensus 177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~ 250 (351)
..++..+++|+-|+.|++||++.......+. +| |+.+..+|+|. .+.+-+-|.++++||+|.. .+++..+.+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeec
Confidence 9999999999999999999999988888887 66 99999999999 7888999999999999853 234667776
Q ss_pred CCC----ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018700 251 HTH----WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (351)
Q Consensus 251 ~~~----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (351)
|.. .....+|+|++ ..+.+|+.|..+++||... ...+..+.+|...|++++|+|..
T Consensus 261 ~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred chhhhhhhcceeeccCCC-CccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecCCC
Confidence 553 35678899999 9999999999999999998 88999999999999999999999
Q ss_pred CceEEEeeeCCeEEEee
Q 018700 327 PWIFASLSYDGRVVVES 343 (351)
Q Consensus 327 ~~~l~s~~~dg~v~vw~ 343 (351)
+ +|.+++.|.+|++=+
T Consensus 321 ~-iils~~sdk~i~lge 336 (338)
T KOG0265|consen 321 P-IILSCSSDKTIYLGE 336 (338)
T ss_pred c-EEEEeccCceeEeec
Confidence 9 999999999998744
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-36 Score=238.80 Aligned_cols=280 Identities=18% Similarity=0.327 Sum_probs=237.9
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (351)
.+..+-++|+-.-.+.+ .++..|++|++... .+ ...+.+|.+.|.+|+|+..|+.|+++ +.|-.+++||
T Consensus 110 ~vt~v~~hp~~~~v~~a----s~d~tikv~D~~tg--~~-e~~LrGHt~sv~di~~~a~Gk~l~tc----SsDl~~~LWd 178 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSA----SEDATIKVFDTETG--EL-ERSLRGHTDSVFDISFDASGKYLATC----SSDLSAKLWD 178 (406)
T ss_pred ceeeeeeccCceEEEEe----cCCceEEEEEccch--hh-hhhhhccccceeEEEEecCccEEEec----CCccchhhee
Confidence 34444455554444333 36788999887764 33 67889999999999999999888875 7888899999
Q ss_pred cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018700 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (351)
..+ ..++++.+.+|+..|.+++|-|.|.+ +++++.|.+|+.|++.++-....+ .+|.+.|..+..+
T Consensus 179 ~~~--------~~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~-----~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 179 FDT--------FFRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF-----PGHSEWVRMVRVN 244 (406)
T ss_pred HHH--------HHHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEEec-----cCchHhEEEEEec
Confidence 983 46788888999999999999999985 677799999999999986544332 3567799999999
Q ss_pred CCCCcEEEeecCCeEEEEEcccCCcCceeec-ce-eEEEEcCCCC--------------CcEEEEecCCCeEEEEecccC
Q 018700 178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKK--------------KHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~-v~~~~~~~~~--------------~~~l~~~~~dg~i~i~d~~~~ 241 (351)
.||..+++++.|.+|++|-+.++++...+.. .| +.+++|.|.. ..++++++.|++|++||+.+
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t- 323 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST- 323 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-
Confidence 9999999999999999999999987777662 23 8999987641 13799999999999999998
Q ss_pred CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018700 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321 (351)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 321 (351)
+.++.++.+|..+|..++|+|.| +||+++..|+++++||++. .++..++..|+.-|++++
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~-------------------~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKN-------------------LQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecc-------------------ceeeeccCCCcceeEEEe
Confidence 77999999999999999999999 9999999999999999999 899999999999999999
Q ss_pred eCCCCCceEEEeeeCCeEEEeec
Q 018700 322 WSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 322 ~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
|+.+.+ ++++|+-|..+++|..
T Consensus 384 fh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCc-eEEeccccceeeeeec
Confidence 999988 8999999999999974
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-35 Score=250.72 Aligned_cols=312 Identities=14% Similarity=0.144 Sum_probs=244.1
Q ss_pred eeeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018700 7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS 86 (351)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~ 86 (351)
.+++.+......|..+.++..+..+++|.. .-+++.+|.+..+. ......+|...+.+++++|||+.+++
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEs---YVlKQQgH~~~i~~l~YSpDgq~iaT---- 367 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSES---YVLKQQGHSDRITSLAYSPDGQLIAT---- 367 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccc---eeeeccccccceeeEEECCCCcEEEe----
Confidence 445566666667777888888888888853 35789999987754 33455789999999999999999888
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
|++|++|+|||.. .+-+..++..|+..|+.+.|+..++. +++++-||+|+.||+........+....
T Consensus 368 G~eDgKVKvWn~~---------SgfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~--- 434 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQ---------SGFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPE--- 434 (893)
T ss_pred ccCCCcEEEEecc---------CceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCC---
Confidence 4799999999988 77899999999999999999999983 6777999999999998654433333222
Q ss_pred cccceeeeEECCCCCcEEEeecC-CeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018700 167 MLHYLSGGAWDPHDVNAVAATCE-SSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (351)
.-...+++..|.|..+.+|+.| -.|.+|++++|+.+..+. +| |.+++|+|.+. .|++++.|.+|++||+-...
T Consensus 435 -p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 435 -PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred -ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC-eEEeccccceEEEEEeeccC
Confidence 2267889999999988888876 479999999999888887 67 99999999998 89999999999999987644
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc-cccccceeeccccceEEEEE
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ-RANSLLNSYSDYEDSVYGLA 321 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~ 321 (351)
..+.++. +...+..++|.|+| .-|+.++.||.|.+||...........+..+..+.. ........-.......+.++
T Consensus 512 ~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ 589 (893)
T KOG0291|consen 512 GTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC 589 (893)
T ss_pred ceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence 4566665 67889999999999 999999999999999998743322222222211111 01111111123346789999
Q ss_pred eCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 322 WSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 322 ~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+++||. .+++||..+.|++|++++.
T Consensus 590 ySaDG~-~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 590 YSADGK-CILAGGESNSICIYDVPEG 614 (893)
T ss_pred EcCCCC-EEEecCCcccEEEEECchh
Confidence 999999 8999999999999999864
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-36 Score=244.95 Aligned_cols=240 Identities=20% Similarity=0.298 Sum_probs=211.4
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
+..|++++|+.+|..|+++ ..||.+++|+.. +..+.++..|+++|.++.|+..|.+ +++++.|++
T Consensus 235 nkdVT~L~Wn~~G~~LatG----~~~G~~riw~~~----------G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~t 299 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATG----SEDGEARIWNKD----------GNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGT 299 (524)
T ss_pred cCCcceEEecCCCCeEEEe----ecCcEEEEEecC----------chhhhhhhccCCceEEEEEcCCCCE-EEeccCCcc
Confidence 4689999999999888884 799999999976 5778899999999999999999996 777799999
Q ss_pred EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC
Q 018700 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK 221 (351)
Q Consensus 145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~ 221 (351)
+.+||..++........ |..+..++.|-. ...+++.+.|+.|+++.+....++.++.. | |.++.|+|.+.
T Consensus 300 tilwd~~~g~~~q~f~~-----~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 300 TILWDAHTGTVKQQFEF-----HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGS 372 (524)
T ss_pred EEEEeccCceEEEeeee-----ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCc
Confidence 99999987554433332 233446788875 45688899999999999999999999984 6 99999999998
Q ss_pred cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCC--------CeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018700 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD--------GFILSAGTDSTVNLWLVSTSNHDELPSE 293 (351)
Q Consensus 222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 293 (351)
+|++++.|++++||.+.. ......+..|...|..+.|+|.|+ ..+++++.|++|++||+..
T Consensus 373 -LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------- 441 (524)
T KOG0273|consen 373 -LLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------- 441 (524)
T ss_pred -eEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---------
Confidence 999999999999999887 668899999999999999999762 5899999999999999999
Q ss_pred ccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
+.++++|..|..+|.+++|+|+|+ ++|+|+.||.|.+|+.+...
T Consensus 442 ----------gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 442 ----------GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ----------CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchh
Confidence 999999999999999999999999 89999999999999988643
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-36 Score=254.38 Aligned_cols=251 Identities=17% Similarity=0.270 Sum_probs=224.3
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+..+...|.++.|+|..+.++++. ..|.|.|||.+ +..+++.+....-+|.+..|-+..++ ++++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~L----ynG~V~IWnye---------tqtmVksfeV~~~PvRa~kfiaRknW-iv~G 73 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAAL----YNGDVQIWNYE---------TQTMVKSFEVSEVPVRAAKFIARKNW-IVTG 73 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEee----ecCeeEEEecc---------cceeeeeeeecccchhhheeeeccce-EEEe
Confidence 3445889999999999999999974 78899999998 67888999999999999999998886 8888
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecce---eEEEE
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNVD 215 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~---v~~~~ 215 (351)
++|..|+||+.++.++...+. .|...|.+++.+|..+++++++.|-.|++||-+.+- +.++++ +| |.+++
T Consensus 74 sDD~~IrVfnynt~ekV~~Fe-----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~ 147 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVKTFE-----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVA 147 (794)
T ss_pred cCCceEEEEecccceeeEEee-----ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEE
Confidence 999999999999876554433 577799999999999999999999999999998764 444554 66 99999
Q ss_pred cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC-CCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018700 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY-DGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (351)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 294 (351)
|+|...+.+++++-|++|++|.+.+ ..+..++++|...|+++.+-+.| ..+|+||+.|.+|+|||.++
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---------- 216 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---------- 216 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch----------
Confidence 9999999999999999999999998 66899999999999999997755 47999999999999999999
Q ss_pred cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccccC
Q 018700 295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 351 (351)
..+++++.+|...|..+.|+|.-+ ++++|+.||++|||+-.++..++
T Consensus 217 ---------k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 217 ---------KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred ---------HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh
Confidence 999999999999999999999999 99999999999999998876543
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.9e-36 Score=246.27 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=239.4
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~ 91 (351)
+....+.++++.+-|....|+++ .+.++.|++|++..+.. ..+.+.+|..+|.+++|++++..++++ +.|+
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~~g~~fLS~----sfD~ 280 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNNCGTSFLSA----SFDR 280 (503)
T ss_pred ccCCccccchhhhccceeeEEEe---cCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccccCCeeeee----ecce
Confidence 33345666777777744444443 25689999999999654 457889999999999999999999996 7999
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v 171 (351)
.|++||.+ +++.+..+. ....++|+.|.|++.+++++++.|+.|+.||+++++... ....|...|
T Consensus 281 ~lKlwDtE---------TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq-----eYd~hLg~i 345 (503)
T KOG0282|consen 281 FLKLWDTE---------TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ-----EYDRHLGAI 345 (503)
T ss_pred eeeeeccc---------cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH-----HHHhhhhhe
Confidence 99999999 788887773 455789999999998889999999999999999765322 233466799
Q ss_pred eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC--ccee
Q 018700 172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--APIQ 246 (351)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~ 246 (351)
..+.|-++++.+++++.|+.++||+.+.+..+..+... | ..++..+|+++ +++.-+.|..|.+|.+...- ...+
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhh
Confidence 99999999999999999999999999987766555432 3 88999999998 78889999999999976422 2345
Q ss_pred EeeCCC--CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 247 ELPGHT--HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 247 ~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
.+++|. +.-..+.||||| .+|++|+.||.+.+||.++ .+++..++.|..++..+.|+|
T Consensus 425 ~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt-------------------~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKT-------------------TKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred hhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechh-------------------hhhhhccccCCcceEEEEecC
Confidence 677776 345678999999 9999999999999999999 899999999999999999999
Q ss_pred CCCceEEEeeeCCeEEEee
Q 018700 325 REPWIFASLSYDGRVVVES 343 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~ 343 (351)
..+..+|+++.||.|++|+
T Consensus 485 ~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 485 VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCcceeEecccCceeEecC
Confidence 9888999999999999996
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.8e-35 Score=219.72 Aligned_cols=269 Identities=16% Similarity=0.276 Sum_probs=222.0
Q ss_pred eeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018700 9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG 88 (351)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~ 88 (351)
+..+.++..-+..+...|+...++++. ...|+++++...+.. -...+.+|.+.|.++.|..+|+.+++ |+
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyT----gs 102 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYT----GS 102 (311)
T ss_pred EEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEe----cC
Confidence 445555556677778888888888764 467999999987654 44778899999999999999999988 58
Q ss_pred CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018700 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (351)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 168 (351)
+||+++|||+. .....+.+ .|.++|+++..+|+... ++++..+|.|++||+.+......+.... .
T Consensus 103 eDgt~kIWdlR---------~~~~qR~~-~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~----~ 167 (311)
T KOG0315|consen 103 EDGTVKIWDLR---------SLSCQRNY-QHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPED----D 167 (311)
T ss_pred CCceEEEEecc---------Ccccchhc-cCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCCC----C
Confidence 99999999998 44554555 67799999999999875 8888889999999999765555544433 2
Q ss_pred cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018700 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (351)
..|.++...|+|..++++...|..++|++-+......+.+ .| +..+.++|+++ +|++++.|.+++||+...
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCC
Confidence 4899999999999999999999999999987553333321 23 88999999999 799999999999999987
Q ss_pred CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018700 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (351)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (351)
.-+....+++|..++...+||.+| .||+||+.|+.+++||++. ++.+..+.+|.....++
T Consensus 247 ~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~-------------------~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 247 FFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSA-------------------GKEVRQYQGHHKAAVCV 306 (311)
T ss_pred ceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeeccccc-------------------CceeeecCCcccccEEE
Confidence 535567788999999999999999 9999999999999999999 89999999998877776
Q ss_pred EeC
Q 018700 321 AWS 323 (351)
Q Consensus 321 ~~~ 323 (351)
+..
T Consensus 307 ~ln 309 (311)
T KOG0315|consen 307 ALN 309 (311)
T ss_pred Eee
Confidence 653
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-34 Score=237.14 Aligned_cols=292 Identities=17% Similarity=0.231 Sum_probs=228.0
Q ss_pred cceeEeeeecCCCCc-ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce
Q 018700 14 YQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG 92 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~ 92 (351)
.+.|.+.++.+-|.. -|++.| .+++.+.+++=.+ .-....+..|..-|.+++|+|||.+++++ +.|++
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~----sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VRysPDG~~Fat~----gsDgk 213 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATG----SDDNTVAFFEGPP---FKFKSSFREHSKFVNCVRYSPDGSRFATA----GSDGK 213 (603)
T ss_pred ccceeEeeeeccCCCceEEEec----cCCCeEEEeeCCC---eeeeecccccccceeeEEECCCCCeEEEe----cCCcc
Confidence 356777777777765 455544 4667776555333 22335567799999999999999999987 79999
Q ss_pred EEEEEcccccCCCCCCcceeeeeee---ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc---------
Q 018700 93 AAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ--------- 160 (351)
Q Consensus 93 i~vw~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------- 160 (351)
+.+||=. +++.+..+. +|++.|.+++|+||+.+ +++++.|.+++|||+.+........
T Consensus 214 i~iyDGk---------tge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 214 IYIYDGK---------TGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EEEEcCC---------CccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 9999976 677777776 89999999999999996 7777899999999998653211110
Q ss_pred -----------------------------cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce------
Q 018700 161 -----------------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS------ 205 (351)
Q Consensus 161 -----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------ 205 (351)
.....+|...|+++..+|++++|++++.||.|.-||..++..-..
T Consensus 284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~ 363 (603)
T KOG0318|consen 284 VGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT 363 (603)
T ss_pred EEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence 112357888999999999999999999999999998865431100
Q ss_pred -------------------------e-------------ecc--------------------------------------
Q 018700 206 -------------------------I-------------EHA-------------------------------------- 209 (351)
Q Consensus 206 -------------------------~-------------~~~-------------------------------------- 209 (351)
+ +.+
T Consensus 364 nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~ 443 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG 443 (603)
T ss_pred ceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccc
Confidence 0 000
Q ss_pred e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCC
Q 018700 210 H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH 287 (351)
Q Consensus 210 ~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 287 (351)
. ..+++++|++. .+++|++|+.|++|.+.... .....+..|..+|++++++|++ .+||++...+.+.+||+.+
T Consensus 444 y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s--- 518 (603)
T KOG0318|consen 444 YESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVAS--- 518 (603)
T ss_pred cccceEEEcCCCC-EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEccc---
Confidence 0 45788999998 79999999999999998532 2333456799999999999999 9999999999999999997
Q ss_pred CCCCCcccccCCccccccc-ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 288 DELPSESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
.+. ...+.-|+..|.+++|+|+.. ++|+|+.|..|.||++++..
T Consensus 519 ----------------~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 519 ----------------REVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred ----------------CceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh
Confidence 332 334455999999999999998 99999999999999998653
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=218.25 Aligned_cols=288 Identities=18% Similarity=0.320 Sum_probs=223.1
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEe--eecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
-+..++++|...+++.. .+.++.|++|..... .....+. -.+|+..|++++|+|.+++|+++ +.|.++.|
T Consensus 16 r~W~~awhp~~g~ilAs---cg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a----SFD~t~~I 87 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILAS---CGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA----SFDATVVI 87 (312)
T ss_pred cEEEEEeccCCceEEEe---ecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEe----eccceEEE
Confidence 35566777764333332 357899999998852 2233332 23799999999999999988885 79999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
|.-. ...++++.++++|..+|.|++|+++|.+ +++++.|+.|-||.+..+...... ....+|++.|..+.
T Consensus 88 w~k~-------~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~--aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 88 WKKE-------DGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECI--AVLQEHTQDVKHVI 157 (312)
T ss_pred eecC-------CCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEE--eeeccccccccEEE
Confidence 9865 3477899999999999999999999994 666699999999999854433221 23447888999999
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccC---CcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSM---GKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG 250 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (351)
|+|....|++++.|++|++|+-..+ .+..++...+ |.+++|+|.|. .|+++++|++++||-... . +. ..
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~-~--~~--~~ 231 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYT-D--LS--GM 231 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeecc-C--cc--hh
Confidence 9999999999999999999987732 3566666322 99999999997 799999999999999763 2 11 13
Q ss_pred CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce-eeccccceEEEEEeCCCCCce
Q 018700 251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWI 329 (351)
Q Consensus 251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 329 (351)
|...++.+.|. + ..|++++.|+.|++|.......+ ...+++. .-..|...|+++.|.|..+.+
T Consensus 232 ~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~-------------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 232 HSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDE-------------PSWNLLAKKEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred cccceEeeeec-c--cceEeccCCCEEEEEEecCCCCC-------------chHHHHHhhhcccccccceEEEcCCCCCc
Confidence 77899999999 3 58999999999999977641110 0123332 335788899999999965558
Q ss_pred EEEeeeCCeEEEeecC
Q 018700 330 FASLSYDGRVVVESVK 345 (351)
Q Consensus 330 l~s~~~dg~v~vw~~~ 345 (351)
|++++.||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999875
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=234.65 Aligned_cols=244 Identities=18% Similarity=0.291 Sum_probs=219.4
Q ss_pred EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018700 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 137 (351)
.+.+.+|.+.|.|+++.|.++++++ |+.|++++|||+. +++...++.+|...|..+++++-..+ ++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~t----gs~DrtikIwDla---------tg~LkltltGhi~~vr~vavS~rHpY-lF 209 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFAT----GSADRTIKIWDLA---------TGQLKLTLTGHIETVRGVAVSKRHPY-LF 209 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEe----cCCCceeEEEEcc---------cCeEEEeecchhheeeeeeecccCce-EE
Confidence 3567899999999999998888877 5899999999999 78999999999999999999999996 77
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
+++.|+.|+.||+...+.+ .++.+|.+.|++++.+|.-+.|++++.|..+++||+++...+..+. +| |.++
T Consensus 210 s~gedk~VKCwDLe~nkvI-----R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V 283 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVI-----RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASV 283 (460)
T ss_pred EecCCCeeEEEechhhhhH-----HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeE
Confidence 7789999999999953322 3345788899999999999999999999999999999998888888 66 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 294 (351)
.+.|..+ -+++|+.|++|++||++. ++...++..|...|.+++.+|.. ..+|+++.|. |+-|++..
T Consensus 284 ~~~~~dp-qvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~---------- 349 (460)
T KOG0285|consen 284 MCQPTDP-QVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPE---------- 349 (460)
T ss_pred EeecCCC-ceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCc----------
Confidence 9998887 699999999999999997 77788899999999999999998 8999999885 89999998
Q ss_pred cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+..+..+.+|..-|++++...|+ ++++|++.|.+.+||.++
T Consensus 350 ---------g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 350 ---------GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred ---------cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCc
Confidence 88899999999999999999886 699999999999999875
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.8e-35 Score=230.95 Aligned_cols=273 Identities=18% Similarity=0.306 Sum_probs=222.0
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCc---eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 116 (351)
.++.+++|+.... ....+.+|.++|.+++|...+.. ++++ +.|.++++|.++... ...+.+...
T Consensus 123 YDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa----s~Dqtl~Lw~~~~~~-----~~~~~~~~~ 189 (423)
T KOG0313|consen 123 YDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSA----SMDQTLRLWKWNVGE-----NKVKALKVC 189 (423)
T ss_pred cCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEe----cCCceEEEEEecCch-----hhhhHHhHh
Confidence 4788888887654 34677899999999988544333 6664 899999999987321 123344455
Q ss_pred eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--------------------CcccccccccCcccceeeeEE
Q 018700 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--------------------NAQVQSKQSSGMLHYLSGGAW 176 (351)
Q Consensus 117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--------------------~~~~~~~~~~~~~~~v~~~~~ 176 (351)
++|+..|.++...+++.. +++++.|..|.||+...... ..........+|..+|.++.|
T Consensus 190 ~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 699999999999999985 77779999999999332110 000111225689999999999
Q ss_pred CCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCC
Q 018700 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTH 253 (351)
Q Consensus 177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~ 253 (351)
++ ...+++++.|.+|+.||+.++.....+.... +.+++++|... +|++|+.|..|++||.|+... +.+++.+|..
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred cC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 97 6779999999999999999999988888666 99999999887 999999999999999997543 4567889999
Q ss_pred ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEe
Q 018700 254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333 (351)
Q Consensus 254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 333 (351)
.|.++.|+|..+..|++++.|+++++||+++ ...++..+.+|...|.++.|...+ ++++|
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS------------------~k~plydI~~h~DKvl~vdW~~~~--~IvSG 406 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS------------------TKAPLYDIAGHNDKVLSVDWNEGG--LIVSG 406 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEecc------------------CCCcceeeccCCceEEEEeccCCc--eEEec
Confidence 9999999999988999999999999999998 144899999999999999998743 79999
Q ss_pred eeCCeEEEeecCccc
Q 018700 334 SYDGRVVVESVKPFL 348 (351)
Q Consensus 334 ~~dg~v~vw~~~~~~ 348 (351)
|.|++|+++.-.+..
T Consensus 407 GaD~~l~i~~~~~~~ 421 (423)
T KOG0313|consen 407 GADNKLRIFKGSPIT 421 (423)
T ss_pred cCcceEEEecccccc
Confidence 999999999876653
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=250.75 Aligned_cols=280 Identities=18% Similarity=0.280 Sum_probs=231.4
Q ss_pred CCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC
Q 018700 25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ 104 (351)
Q Consensus 25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~ 104 (351)
.|+...+++++. ...++++.+... ....+.+|+..|.++....+|-.|++ ++.|.++++|.+++.
T Consensus 333 G~e~~~laVATN----s~~lr~y~~~~~----~c~ii~GH~e~vlSL~~~~~g~llat----~sKD~svilWr~~~~--- 397 (775)
T KOG0319|consen 333 GPEESHLAVATN----SPELRLYTLPTS----YCQIIPGHTEAVLSLDVWSSGDLLAT----GSKDKSVILWRLNNN--- 397 (775)
T ss_pred CCccceEEEEeC----CCceEEEecCCC----ceEEEeCchhheeeeeecccCcEEEE----ecCCceEEEEEecCC---
Confidence 445556666653 355666655543 23467899999999995555644444 489999999988421
Q ss_pred CCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc----cccCcccceeeeEECCCC
Q 018700 105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----QSSGMLHYLSGGAWDPHD 180 (351)
Q Consensus 105 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~ 180 (351)
....-++....+|+..|.+++++..+..+++++|.|.++++|++...+........ ....|...|++++.+|+.
T Consensus 398 --~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 398 --CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred --cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 11345566778999999999998888876666799999999999863222221111 223567799999999999
Q ss_pred CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeE
Q 018700 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA 257 (351)
Q Consensus 181 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 257 (351)
+.+++|+.|.+.++|+++......++. +| +.++.|+|..+ +++|++.|++|+||.+.+ ..+++++.+|+..|..
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLR 552 (775)
T ss_pred ceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecCccceeEe
Confidence 999999999999999999877777777 67 99999999998 999999999999999998 7799999999999999
Q ss_pred EEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC
Q 018700 258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG 337 (351)
Q Consensus 258 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 337 (351)
+.|-.++ ..|++++.||.|++|++.+ .+++.++..|++.|++++-+|... ++++|+.||
T Consensus 553 a~F~~~~-~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg 611 (775)
T KOG0319|consen 553 ASFIRNG-KQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDG 611 (775)
T ss_pred eeeeeCC-cEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEeecCccc-eeEecCCCe
Confidence 9999999 9999999999999999999 999999999999999999999998 899999999
Q ss_pred eEEEeecC
Q 018700 338 RVVVESVK 345 (351)
Q Consensus 338 ~v~vw~~~ 345 (351)
.|.+|.=.
T Consensus 612 ~i~~wkD~ 619 (775)
T KOG0319|consen 612 RIIFWKDV 619 (775)
T ss_pred EEEEeecC
Confidence 99999743
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-34 Score=246.02 Aligned_cols=288 Identities=14% Similarity=0.235 Sum_probs=237.9
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~ 91 (351)
++-..-.+.+..+++....+++|- ..+.++++.++.-. ....+.--+.+|..++|+..|.+|+.+ ++.-|
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgF----ssG~f~LyelP~f~---lih~LSis~~~I~t~~~N~tGDWiA~g---~~klg 330 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGF----SSGEFGLYELPDFN---LIHSLSISDQKILTVSFNSTGDWIAFG---CSKLG 330 (893)
T ss_pred ecccccceeeeeccCCceEEEEEe----cCCeeEEEecCCce---EEEEeecccceeeEEEecccCCEEEEc---CCccc
Confidence 333334566677788877777763 45677788877643 334445556799999999999999987 47778
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v 171 (351)
.+.||+.. ...-+...++|...+++++++|||+. +++++.||.|+|||...+-.... ...|+..|
T Consensus 331 QLlVweWq---------sEsYVlKQQgH~~~i~~l~YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vT-----FteHts~V 395 (893)
T KOG0291|consen 331 QLLVWEWQ---------SESYVLKQQGHSDRITSLAYSPDGQL-IATGAEDGKVKVWNTQSGFCFVT-----FTEHTSGV 395 (893)
T ss_pred eEEEEEee---------ccceeeeccccccceeeEEECCCCcE-EEeccCCCcEEEEeccCceEEEE-----eccCCCce
Confidence 99999998 44566777899999999999999993 66678999999999986543332 33578899
Q ss_pred eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCC-eEEEEecccCCcceeE
Q 018700 172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKAPIQE 247 (351)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~ 247 (351)
+++.|+..++.+++.+-||+|+.||+......+++..+. ..|++..|.|. ++..|+.|. .|.+|++++ ++.+..
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qT-GqllDi 473 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQT-GQLLDI 473 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeec-Ceeeeh
Confidence 999999999999999999999999999998888887555 88999999998 777787775 799999998 889999
Q ss_pred eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018700 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP 327 (351)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (351)
+.+|++||.+++|+|.+ ..|++++.|.+|++||+-.. ...+.++. +...+..++|+|+|+
T Consensus 474 LsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s------------------~~~vEtl~-i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSS------------------SGTVETLE-IRSDVLAVSFRPDGK 533 (893)
T ss_pred hcCCCCcceeeEEcccc-CeEEeccccceEEEEEeecc------------------CceeeeEe-eccceeEEEEcCCCC
Confidence 99999999999999999 99999999999999999761 34555554 445699999999999
Q ss_pred ceEEEeeeCCeEEEeecCcc
Q 018700 328 WIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 328 ~~l~s~~~dg~v~vw~~~~~ 347 (351)
-+|.+..||.|.+||++..
T Consensus 534 -elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 534 -ELAVATLDGQITFFDIKEA 552 (893)
T ss_pred -eEEEEEecceEEEEEhhhc
Confidence 7999999999999998754
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=224.69 Aligned_cols=251 Identities=18% Similarity=0.297 Sum_probs=211.6
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+.+|++.|..+.|+|+|..|++ ||.|..|.+|++.. ..+....+++|+++|+.+.|.++++. +++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aS----gG~Dr~I~LWnv~g--------dceN~~~lkgHsgAVM~l~~~~d~s~-i~S 107 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFAS----GGSDRAIVLWNVYG--------DCENFWVLKGHSGAVMELHGMRDGSH-ILS 107 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEee----cCCcceEEEEeccc--------cccceeeeccccceeEeeeeccCCCE-EEE
Confidence 457899999999999999988888 58999999999763 44566678899999999999999995 777
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecce-eEEEEc
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH-VRNVDY 216 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~ 216 (351)
++.|.+|+.||+++++...+.. +|...++++.-+.-|..++ +++.|+++++||+++...+.+++... ++++.|
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k-----~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f 182 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHK-----GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGF 182 (338)
T ss_pred ecCCceEEEEecccceeeehhc-----cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEe
Confidence 7999999999999876655443 4666788887554555554 56789999999999999998887555 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018700 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (351)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 296 (351)
..++. -+.+|+-|+.|++||+|. ...+..+.+|..+|+.+..+|+| .++.+-+.|.++++||++...+.
T Consensus 183 ~d~s~-qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~-------- 251 (338)
T KOG0265|consen 183 KDTSD-QVISGGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPS-------- 251 (338)
T ss_pred ccccc-ceeeccccCceeeecccc-CcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCC--------
Confidence 99998 688999999999999998 66899999999999999999999 99999999999999999863221
Q ss_pred cCCcccccccceeecccc----ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 297 ESPNQRANSLLNSYSDYE----DSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
..++..+.+|. .....++|+|++. .+.+|+.|+.+++||...
T Consensus 252 -------~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 252 -------QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS 297 (338)
T ss_pred -------CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc
Confidence 34577776653 2356789999998 799999999999999754
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-33 Score=234.59 Aligned_cols=279 Identities=20% Similarity=0.366 Sum_probs=231.8
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
...+..+.++++...++.+. .++.+.+|++.... ....+..|...+..+.|+|+++.++++ +.++.|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~~~~i~i 77 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGS----GDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASG----SSDKTIRL 77 (289)
T ss_pred CCCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEE----cCCCeEEE
Confidence 45677788888888888775 47899999988654 334566899999999999999888775 67999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
|++. ..+.+..+..|...|.++.|++++. ++++++.++.|.+||+.+......+. .|...+.+++
T Consensus 78 ~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~ 142 (289)
T cd00200 78 WDLE---------TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNSVA 142 (289)
T ss_pred EEcC---------cccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEEEE
Confidence 9998 4466777888999999999999966 34444559999999998543332222 4556899999
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH 253 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 253 (351)
|+|++.++++++.++.|++||+++++....+.... +.+++|+|+++ .+++++.++.|++||++. .+.+..+..|..
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~ 220 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST-GKCLGTLRGHEN 220 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCC-CceecchhhcCC
Confidence 99998877777779999999999888777776322 99999999997 677788899999999987 667777878899
Q ss_pred ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEe
Q 018700 254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333 (351)
Q Consensus 254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 333 (351)
.+.++.|+|++ .++++++.|+.|++||+.. +..+..+..|...|.+++|+|++. +++++
T Consensus 221 ~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 279 (289)
T cd00200 221 GVNSVAFSPDG-YLLASGSEDGTIRVWDLRT-------------------GECVQTLSGHTNSVTSLAWSPDGK-RLASG 279 (289)
T ss_pred ceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC-------------------ceeEEEccccCCcEEEEEECCCCC-EEEEe
Confidence 99999999997 8999988899999999997 777888888988999999999988 89999
Q ss_pred eeCCeEEEee
Q 018700 334 SYDGRVVVES 343 (351)
Q Consensus 334 ~~dg~v~vw~ 343 (351)
+.|+.|++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=251.90 Aligned_cols=284 Identities=19% Similarity=0.326 Sum_probs=234.4
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
.+.+..+.+++++..++.++ .++.+.+|....... .....+.+|...|.+++|+|+++.++++ +.|++|+|
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~----~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~----s~D~tiri 229 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAAS----SDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSG----SDDKTLRI 229 (456)
T ss_pred cCceEEEEEcCCCCeEEEcc----CCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEe----cCCceEEE
Confidence 45666677888887766653 567888888744331 2334457999999999999999988875 79999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
||+.. ....++++.+|...|++++|+|+++ ++++++.|++|+|||+.++.... ...+|...|.+++
T Consensus 230 wd~~~--------~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~-----~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 230 WDLKD--------DGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVR-----KLKGHSDGISGLA 295 (456)
T ss_pred eeccC--------CCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEE-----eeeccCCceEEEE
Confidence 99952 5588899999999999999999994 57777999999999999733222 2346777999999
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCC--cCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
|++++..|++++.|+.|++||+.++. +...+.... +.++.|+|++. +++++..|+.+++||++. ...+..+.
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~-~~~~~~~~ 373 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRS-GKSVGTYT 373 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccC-Ccceeeec
Confidence 99999999999999999999999988 334444222 69999999999 788999999999999997 66788888
Q ss_pred CCCCc---eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc-cceEEEEEeCCC
Q 018700 250 GHTHW---TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSR 325 (351)
Q Consensus 250 ~~~~~---v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 325 (351)
+|... +.+...++.+ .++++|+.|+.|++||+.+ +..+..+.+| ...+..++|+|.
T Consensus 374 ~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s-------------------~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 374 GHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSS-------------------GGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred ccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCc-------------------cchhhhhcCCCCCceeccccCCC
Confidence 88775 3344457777 9999999999999999998 8888899999 888999999999
Q ss_pred CCceEEEee--eCCeEEEeecC
Q 018700 326 EPWIFASLS--YDGRVVVESVK 345 (351)
Q Consensus 326 ~~~~l~s~~--~dg~v~vw~~~ 345 (351)
.. ++++++ .|+.+++|..+
T Consensus 434 ~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 EN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cC-eeeecCcCCCceEEEecCC
Confidence 88 888888 79999999864
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.5e-32 Score=258.92 Aligned_cols=292 Identities=14% Similarity=0.231 Sum_probs=216.8
Q ss_pred eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC---CCeE-EEEeeecCCcceeeeeeCCCC-CceEEEEeecCCcc
Q 018700 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG---GTEL-ICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESY 91 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~---~~~~-~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~~~~~d~ 91 (351)
..+..+.+++++..++.|. .++.|.+|++... .... .......+...|.+++|+|.. ..|++ ++.|+
T Consensus 484 ~~V~~i~fs~dg~~latgg----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las----~~~Dg 555 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG----VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS----SNFEG 555 (793)
T ss_pred CcEEEEEECCCCCEEEEEe----CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE----EeCCC
Confidence 3467778888888777764 6899999987531 1100 011122345789999998864 45554 37899
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v 171 (351)
+|++||+. +.+.+..+.+|.+.|++++|+|....++++++.|+.|++||+.++.....+.. ...+
T Consensus 556 ~v~lWd~~---------~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~v 620 (793)
T PLN00181 556 VVQVWDVA---------RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KANI 620 (793)
T ss_pred eEEEEECC---------CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCCe
Confidence 99999998 56778888999999999999974433477778999999999986544332221 2378
Q ss_pred eeeEEC-CCCCcEEEeecCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC-----
Q 018700 172 SGGAWD-PHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML----- 241 (351)
Q Consensus 172 ~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----- 241 (351)
.++.|+ +++..+++|+.|+.|++||+++... ...+. +| |.++.|. ++. .+++++.|++|++||++..
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccC
Confidence 899995 5688999999999999999987653 33443 45 9999997 555 7899999999999999742
Q ss_pred CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc--eeeccccceEEE
Q 018700 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL--NSYSDYEDSVYG 319 (351)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~ 319 (351)
..++..+.+|...+..++|+|++ .+|++|+.|+.|++|+........ ..... ....+ .....|...|.+
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~----s~~~~----~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVL----SYKFK----TIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceE----EEecc----cCCcccccccCCCCcEEEE
Confidence 24678899999999999999999 999999999999999986521000 00000 00000 112345677999
Q ss_pred EEeCCCCCceEEEeeeCCeEEEeec
Q 018700 320 LAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 320 ~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
++|+|++. .|++++.||.|+||++
T Consensus 769 v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCC-eEEEecCCCcEEEEec
Confidence 99999998 8999999999999996
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=219.75 Aligned_cols=280 Identities=16% Similarity=0.235 Sum_probs=226.6
Q ss_pred ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018700 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA 94 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~ 94 (351)
+...+-+++.+|+....+.| +.++.-.+|+..... ....+.+|.+.|.++.|+.++.+|++ |+-+|.|+
T Consensus 63 H~~svFavsl~P~~~l~aTG----GgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLAT----GdmsG~v~ 131 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATG----GGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLAT----GDMSGKVL 131 (399)
T ss_pred cCCceEEEEeCCCCceEEec----CCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEe----cCCCccEE
Confidence 44556667777744444433 678899999998865 44667899999999999999988877 58999999
Q ss_pred EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018700 95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (351)
||+.. +......+...-..+.-+.|+|.+. ++++++.||.+.+|.+.+. ... +...+|..++++=
T Consensus 132 v~~~s---------tg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~-~~~----kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 132 VFKVS---------TGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ-ALC----KVMSGHNSPCTCG 196 (399)
T ss_pred EEEcc---------cCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc-cee----eEecCCCCCcccc
Confidence 99998 5555556655667888999999777 5888899999999999863 222 2344688899999
Q ss_pred EECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---------------------------------------------
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------------------------------------------- 209 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------- 209 (351)
.|.|+|+.++++..||+|++|++.+++++..+...
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 99999999999999999999999998766555410
Q ss_pred -----e---eEEE---EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018700 210 -----H---VRNV---DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278 (351)
Q Consensus 210 -----~---v~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 278 (351)
+ +.++ .++..-+ ++|+|+-||+|.|||+.. .+ ++..-.|..+|..+.|-+ . .+|++++.+|.|+
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~-~~-~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAA-ST-LRHICEHEDGVTKLKWLN-T-DYLLTACANGKVR 351 (399)
T ss_pred cccccchhhhhhhhhcccccccc-hhhcccccceEEEEeccc-ch-hheeccCCCceEEEEEcC-c-chheeeccCceEE
Confidence 0 1122 2222334 678899999999999986 43 444456999999999999 4 7999999999999
Q ss_pred EEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.||.++ ++++.++.+|...|.+++.+|+.+ +++++|.|++.+|++++
T Consensus 352 ~wDaRt-------------------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 352 QWDART-------------------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccc-------------------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 999999 999999999999999999999998 89999999999999976
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-34 Score=215.72 Aligned_cols=264 Identities=15% Similarity=0.189 Sum_probs=217.4
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+.+|+.+++.+.|+.+|..|+++ +.|.+..||-.. +++.+-++.+|++.|+|+...-+.++ ++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFsc----aKD~~~~vw~s~---------nGerlGty~GHtGavW~~Did~~s~~-liTG 70 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSC----AKDSTPTVWYSL---------NGERLGTYDGHTGAVWCCDIDWDSKH-LITG 70 (327)
T ss_pred ccccCccccceEEecCCCcEEEEe----cCCCCceEEEec---------CCceeeeecCCCceEEEEEecCCcce-eeec
Confidence 456899999999999999999986 799999999876 67899999999999999999998885 8888
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEEccc-------CCcCceee
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRS-------MGKTNSIE 207 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~-------~~~~~~~~ 207 (351)
+.|.++++||+.++++........ +|..+.|+++++++++... .+.|.++|++. .++...+.
T Consensus 71 SAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred cccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 999999999999987776665544 8999999999998877653 47899999983 34455555
Q ss_pred cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 208 HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 208 ~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
... ++.+-|.|-++ .|++|.+||.|.+||.++..+.+..-+.|...|+.++++|+. .+++|++.|.+-++||+++.
T Consensus 145 t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce
Confidence 333 99999999998 799999999999999998666777778899999999999999 99999999999999999876
Q ss_pred CCC-----CCCCcccccCCcc-------------------------------cccccceeeccccceEEEEEeCCCCCce
Q 018700 286 NHD-----ELPSESLVESPNQ-------------------------------RANSLLNSYSDYEDSVYGLAWSSREPWI 329 (351)
Q Consensus 286 ~~~-----~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 329 (351)
... +.+.+.+..+|.. --.+.+..+++|-++|++++|+|+|+ .
T Consensus 223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-s 301 (327)
T KOG0643|consen 223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-S 301 (327)
T ss_pred eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-c
Confidence 321 1122222222210 11234556789999999999999999 7
Q ss_pred EEEeeeCCeEEEeecCc
Q 018700 330 FASLSYDGRVVVESVKP 346 (351)
Q Consensus 330 l~s~~~dg~v~vw~~~~ 346 (351)
.++|+.||.||+...++
T Consensus 302 YsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccCCCCceEEEEEecc
Confidence 99999999999987764
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=213.11 Aligned_cols=247 Identities=13% Similarity=0.259 Sum_probs=200.1
Q ss_pred eeeeeCCC-CCceEEEE---eecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018700 69 WDLSSCPF-DQRIFSTV---FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 69 ~~i~~~~~-~~~l~~~~---~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
.++.|||- ..+|++++ +.=...|.+.|-++.. .+.......+ .-.+.+..++|+++....+++++.||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~------~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD------PKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGS 84 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCC------CCCeEEEEee-ecccceeEeeecCCCcceEEEEecCce
Confidence 46788884 22333332 1113456788887751 1123334444 356789999999999887888899999
Q ss_pred EEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCC
Q 018700 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKK 220 (351)
Q Consensus 145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~ 220 (351)
+++||+........ ..+.|...|.++.|++..+ .+++++.|++|++||...++.+.++. +| |...+|+|..
T Consensus 85 Lrl~d~~~~s~Pi~----~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 85 LRLFDLTMPSKPIH----KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHI 159 (311)
T ss_pred EEEeccCCCCcchh----HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCC
Confidence 99999764433322 2346788999999998654 46677899999999999999999988 56 9999999999
Q ss_pred CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018700 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300 (351)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (351)
++++++++.|+++++||+|.+++.+. +..|...|.++.|+...+.+++||+.|+.|+.||+++
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~---------------- 222 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN---------------- 222 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh----------------
Confidence 99999999999999999999877655 8899999999999998889999999999999999997
Q ss_pred ccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
...++..+.+|.-.|+.+.|||....+|++++.|-++||||...
T Consensus 223 --~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 223 --LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred --ccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 26778899999999999999998888999999999999999863
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=247.89 Aligned_cols=246 Identities=21% Similarity=0.371 Sum_probs=208.1
Q ss_pred EeeecC-CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce--eeeeeeccccceeEEEecCCCCCc
Q 018700 59 EGLFSH-PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE--RIAALDAHVGKINCVLWWSSGRHD 135 (351)
Q Consensus 59 ~~~~~h-~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~ 135 (351)
..+..| ...|.++.|+++++.++++ +.++.+++|+.. ..+ ....+.+|...|.+++|+|++..
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~----~~~~~i~~~~~~---------~~~~~~~~~l~~h~~~v~~~~fs~d~~~- 217 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAA----SSDGLIRIWKLE---------GIKSNLLRELSGHTRGVSDVAFSPDGSY- 217 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEc----cCCCcEEEeecc---------cccchhhccccccccceeeeEECCCCcE-
Confidence 334344 6899999999999997775 799999999986 333 66677899999999999999993
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR 212 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~ 212 (351)
+++++.|++|+|||+.......+.+ .+|...|++++|+|+++.+++|+.|++|++||++++++...+. +| |.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l----~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTL----KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEe----cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceE
Confidence 6677899999999995433333333 3788899999999999999999999999999999999988888 55 99
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCCc--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 288 (351)
+++|++++. ++++++.|+.|++||+.+ +. ++..+..+... ++.++|+|++ .+++++..|+.+++||++.
T Consensus 293 ~~~f~~d~~-~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~---- 365 (456)
T KOG0266|consen 293 GLAFSPDGN-LLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRS---- 365 (456)
T ss_pred EEEECCCCC-EEEEcCCCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccC----
Confidence 999999998 789999999999999997 54 45667666655 9999999999 9999999999999999998
Q ss_pred CCCCcccccCCcccccccceeeccccce---EEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDS---VYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
...+..+.+|... +.+...++.+. ++++++.|+.|++|++.+
T Consensus 366 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 366 ---------------GKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ---------------CcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCc
Confidence 7888888888764 34445577888 899999999999999985
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=210.79 Aligned_cols=243 Identities=16% Similarity=0.207 Sum_probs=206.6
Q ss_pred EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018700 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 137 (351)
...+..|+++|..+.|+-+|++.+++ |.|.+|++|+.. .+.+++++.+|..+|..++.+.|+.. ++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltc----GsdrtvrLWNp~---------rg~liktYsghG~EVlD~~~s~Dnsk-f~ 75 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTC----GSDRTVRLWNPL---------RGALIKTYSGHGHEVLDAALSSDNSK-FA 75 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEc----CCCceEEeeccc---------ccceeeeecCCCceeeeccccccccc-cc
Confidence 34567899999999999999999885 899999999987 78999999999999999999999885 77
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC--CcCceeecce--eEE
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHAH--VRN 213 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~--v~~ 213 (351)
+++.|..|.+||+++++...+.. +|...|+.++|+.+...+++|+.|.++++||-++. ++++.+.... |.+
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~r-----gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFR-----GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecc-----cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence 77889999999999876555443 67779999999999999999999999999999865 4556665444 889
Q ss_pred EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018700 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (351)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 293 (351)
+..+.. .+++|+.||+++.||+|. ++....+ ...+|++++|++++ +..+.++.|+++++.|-.+
T Consensus 151 i~v~~h---eIvaGS~DGtvRtydiR~-G~l~sDy--~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~t--------- 214 (307)
T KOG0316|consen 151 IDVAEH---EIVAGSVDGTVRTYDIRK-GTLSSDY--FGHPITSVSFSKDG-NCSLASSLDSTLRLLDKET--------- 214 (307)
T ss_pred EEeccc---EEEeeccCCcEEEEEeec-ceeehhh--cCCcceeEEecCCC-CEEEEeeccceeeecccch---------
Confidence 988643 688899999999999997 6544444 35699999999999 9999999999999999999
Q ss_pred ccccCCcccccccceeeccccceEE--EEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 294 SLVESPNQRANSLLNSYSDYEDSVY--GLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++++..+++|.+.=. ..+++.... .+++|++||.|++||+.+
T Consensus 215 ----------GklL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 215 ----------GKLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ----------hHHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecc
Confidence 999999999976433 445666666 899999999999999864
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=220.88 Aligned_cols=291 Identities=17% Similarity=0.301 Sum_probs=240.3
Q ss_pred ccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce
Q 018700 13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG 92 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~ 92 (351)
+....|+..+..+|....|+.|+ .++.+.+|++... + +...+.+|...|..+++|+...+++++ +.|+.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs----~DrtikIwDlatg--~-LkltltGhi~~vr~vavS~rHpYlFs~----gedk~ 216 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGS----ADRTIKIWDLATG--Q-LKLTLTGHIETVRGVAVSKRHPYLFSA----GEDKQ 216 (460)
T ss_pred hhccceEEEEeeCCCceeEEecC----CCceeEEEEcccC--e-EEEeecchhheeeeeeecccCceEEEe----cCCCe
Confidence 34567888999999999998875 5889999998874 2 346778999999999999999999996 79999
Q ss_pred EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018700 93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (351)
Q Consensus 93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (351)
|+-||++ ..+.++.+.+|-+.|.|++..|.-. ++++++.|.+++|||+++.... ....+|..+|.
T Consensus 217 VKCwDLe---------~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V-----~~l~GH~~~V~ 281 (460)
T KOG0285|consen 217 VKCWDLE---------YNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASV-----HVLSGHTNPVA 281 (460)
T ss_pred eEEEech---------hhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceE-----EEecCCCCcce
Confidence 9999999 6788999999999999999999887 3777799999999999964322 23457888999
Q ss_pred eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018700 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG 250 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (351)
.+.+.|-+..+++++.|++|++||++.++...++.... +.+++.+|... .+++++.| .|+-|++.. +..++.+.+
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~-g~f~~nlsg 358 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPE-GEFLQNLSG 358 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCc-cchhhcccc
Confidence 99999999999999999999999999999888877333 99999999986 78888776 799999997 667888999
Q ss_pred CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceE
Q 018700 251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF 330 (351)
Q Consensus 251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 330 (351)
|..-|++++.+.|+ ++++|+.+|.+.+||.+++..-+... .......+ ..+..|.+.+|...|. .|
T Consensus 359 h~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~----------t~vqpGSl-~sEagI~as~fDktg~-rl 424 (460)
T KOG0285|consen 359 HNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQ----------TIVQPGSL-ESEAGIFASCFDKTGS-RL 424 (460)
T ss_pred ccceeeeeeeccCc--eEEEcCCceEEEEEecCcCccccccc----------ccccCCcc-ccccceeEEeecccCc-eE
Confidence 99999999999886 89999999999999999832211100 00000111 1245689999999998 79
Q ss_pred EEeeeCCeEEEeecCc
Q 018700 331 ASLSYDGRVVVESVKP 346 (351)
Q Consensus 331 ~s~~~dg~v~vw~~~~ 346 (351)
++|..|.+|++|+-++
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999998654
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-32 Score=226.54 Aligned_cols=300 Identities=15% Similarity=0.185 Sum_probs=230.0
Q ss_pred ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018700 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA 94 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~ 94 (351)
+.+++..+..+|++.+|+.. +.++++++++=-....--....-.+|++.|.+++|+||+.+++++ +.|.+++
T Consensus 189 HskFV~~VRysPDG~~Fat~----gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~----SaDkt~K 260 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATA----GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV----SADKTIK 260 (603)
T ss_pred cccceeeEEECCCCCeEEEe----cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe----cCCceEE
Confidence 45788888889998888753 568888887755433322223345899999999999999999997 7999999
Q ss_pred EEEcccccC----------------------------------CCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 95 IWQIPELYG----------------------------------QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 95 vw~~~~~~~----------------------------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
|||+.+..- -.+.....++..+.+|...|+++..+|++++ +++++
T Consensus 261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~Sgs 339 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGS 339 (603)
T ss_pred EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-EEeec
Confidence 999975310 0022233467778899999999999999975 78889
Q ss_pred cCCcEEEEEcCCCCCCccc-------------------cc-----------c---ccc----------------------
Q 018700 141 DEENIFLWSLDCSNKNAQV-------------------QS-----------K---QSS---------------------- 165 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~-------------------~~-----------~---~~~---------------------- 165 (351)
.||.|.-|+..++...... +. . ...
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 9999999998764321100 00 0 000
Q ss_pred ---------------------CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce-eecce---eEEEEcCCCC
Q 018700 166 ---------------------GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-IEHAH---VRNVDYDTKK 220 (351)
Q Consensus 166 ---------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~---v~~~~~~~~~ 220 (351)
.......+++++|++..+++|+.|+.|++|.+........ ....| +++++++|++
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 0001245668999999999999999999999987654332 22233 9999999999
Q ss_pred CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018700 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300 (351)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (351)
. +|++|...+.+.+||+.+.......+.-|...|.+++|+|++ .++|||+.|-.|.||++...
T Consensus 500 ~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP--------------- 562 (603)
T KOG0318|consen 500 A-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKP--------------- 562 (603)
T ss_pred c-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccCh---------------
Confidence 9 799999999999999987444444555699999999999999 99999999999999999871
Q ss_pred ccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.+.+....+|...|+.+.|-.+. .+++.+.|..|++|++.
T Consensus 563 ---~~~i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 563 ---AKHIIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT 602 (603)
T ss_pred ---hhheEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence 34455667898889999998654 58999999999999975
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=227.40 Aligned_cols=263 Identities=16% Similarity=0.276 Sum_probs=213.5
Q ss_pred CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018700 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120 (351)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 120 (351)
++.|.+|+... ......+.||.+.|.|+.|.. +.+++ |++|.+|+|||+. +++++.++-.|.
T Consensus 216 DnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--rviis----GSSDsTvrvWDv~---------tge~l~tlihHc 277 (499)
T KOG0281|consen 216 DNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--RVIVS----GSSDSTVRVWDVN---------TGEPLNTLIHHC 277 (499)
T ss_pred cCceEEecccc---HHHHHhhhcCCCcEEeeeccc--eEEEe----cCCCceEEEEecc---------CCchhhHHhhhc
Confidence 44554444332 334466889999999999974 34444 6899999999999 789999999999
Q ss_pred cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018700 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 200 (351)
..|..+.|+.. ++++++.|.++.+||+.... .........+|...|+.+.|+ .+++++++.|.+|++|++.++
T Consensus 278 eaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 278 EAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred ceeEEEEEeCC---EEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 99999999864 37788999999999998643 334444566888999999996 569999999999999999999
Q ss_pred CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018700 201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (351)
Q Consensus 201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 277 (351)
+.+.++. +| |.|+.+ .++ ++++|++|.+|++||+.. +.+++.+++|+.-|.++.|.. ..+++|+.||.|
T Consensus 351 efvRtl~-gHkRGIAClQY--r~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd~---krIVSGaYDGki 422 (499)
T KOG0281|consen 351 EFVRTLN-GHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKI 422 (499)
T ss_pred eeehhhh-cccccceehhc--cCe-EEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeecC---ceeeeccccceE
Confidence 9999988 66 888877 355 899999999999999997 889999999999999999986 679999999999
Q ss_pred EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018700 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS 349 (351)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 349 (351)
++||+...-....+ ...-++.++..|++.|..+.|.. . .+++++.|.+|.|||+....+
T Consensus 423 kvWdl~aaldpra~----------~~~~Cl~~lv~hsgRVFrLQFD~--f-qIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 423 KVWDLQAALDPRAP----------ASTLCLRTLVEHSGRVFRLQFDE--F-QIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEecccccCCccc----------ccchHHHhhhhccceeEEEeecc--e-EEEeccCCCeEEEEEcCCCCc
Confidence 99999873211110 01346777788999999999964 3 688999999999999876543
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-33 Score=233.13 Aligned_cols=276 Identities=22% Similarity=0.308 Sum_probs=234.4
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (351)
-+..+.++|....++.+- .++.+.+|++... ...+.+.-.+-+|++..|-+..+++++ |+.|..|+||+
T Consensus 15 RVKsVd~HPtePw~la~L----ynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~----GsDD~~IrVfn 83 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAAL----YNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVT----GSDDMQIRVFN 83 (794)
T ss_pred ceeeeecCCCCceEEEee----ecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEE----ecCCceEEEEe
Confidence 466777888887777763 3688888888763 344666667789999999998889888 48999999999
Q ss_pred cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018700 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (351)
.. +++.+..+..|.+-|.|++.+|..++ ++++++|..|++||.+..-.+.+ ...+|...|.+++|+
T Consensus 84 yn---------t~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~q----tfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 84 YN---------TGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQ----TFEGHEHYVMQVAFN 149 (794)
T ss_pred cc---------cceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeee----EEcCcceEEEEEEec
Confidence 98 88999999999999999999999995 77889999999999996433333 345888999999999
Q ss_pred CCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC-cEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018700 178 PHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGHT 252 (351)
Q Consensus 178 ~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 252 (351)
|.+ +.+++++-|++|++|.+.+..+..+++ +| |+|+.+-+-|. -++++|++|.+|+|||.++ +.+++++++|.
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt 227 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHT 227 (794)
T ss_pred CCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHhhccc
Confidence 965 568889999999999999998988988 77 99999987652 2799999999999999998 88999999999
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS 332 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 332 (351)
..|+.+.|+|.- .+++||+.||+++||+..+ -++..++.-.-+.|++++-.+.+. .++.
T Consensus 228 ~Nvs~v~fhp~l-piiisgsEDGTvriWhs~T-------------------y~lE~tLn~gleRvW~I~~~k~~~-~i~v 286 (794)
T KOG0276|consen 228 NNVSFVFFHPEL-PIIISGSEDGTVRIWNSKT-------------------YKLEKTLNYGLERVWCIAAHKGDG-KIAV 286 (794)
T ss_pred ccceEEEecCCC-cEEEEecCCccEEEecCcc-------------------eehhhhhhcCCceEEEEeecCCCC-eEEE
Confidence 999999999999 9999999999999999988 566666666667899999888777 6888
Q ss_pred eeeCCeEEE
Q 018700 333 LSYDGRVVV 341 (351)
Q Consensus 333 ~~~dg~v~v 341 (351)
|.++|.|.+
T Consensus 287 G~Deg~i~v 295 (794)
T KOG0276|consen 287 GFDEGSVTV 295 (794)
T ss_pred eccCCcEEE
Confidence 877776643
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-33 Score=237.91 Aligned_cols=268 Identities=20% Similarity=0.324 Sum_probs=219.0
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeee-CCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSS-CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
.+.++.+++... ....+.+.|..+.|.+++| .|+.+.|+++ .+.+.+|+|++. ...+ ..+.+
T Consensus 301 aeQnl~l~d~~~---l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA----TNs~~lr~y~~~---------~~~c-~ii~G 363 (775)
T KOG0319|consen 301 AEQNLFLYDEDE---LTIVKQIVGYNDEILDMKFLGPEESHLAVA----TNSPELRLYTLP---------TSYC-QIIPG 363 (775)
T ss_pred ccceEEEEEccc---cEEehhhcCCchhheeeeecCCccceEEEE----eCCCceEEEecC---------CCce-EEEeC
Confidence 355666664443 2345778899999999998 5666777776 577899999887 3333 37889
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDL 197 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~ 197 (351)
|++.|.++....+|. ++++++.|.++++|.++++ ...........+|...|.+++++..+. .+++++.|+++++|++
T Consensus 364 H~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~-~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNN-CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred chhheeeeeecccCc-EEEEecCCceEEEEEecCC-cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 999999999666664 4666699999999999543 333334444568999999999977654 5777899999999999
Q ss_pred ccCCcC---cee-----ecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC
Q 018700 198 RSMGKT---NSI-----EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG 266 (351)
Q Consensus 198 ~~~~~~---~~~-----~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (351)
...+.. ..+ ...| |++++++|+.. +++||+.|.+.+||+++. .....++.+|...|.++.|+|.. .
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~d-q 518 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKND-Q 518 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEecccc-c
Confidence 863211 111 1234 99999999998 999999999999999996 67889999999999999999998 9
Q ss_pred eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 267 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.++|+|.|++|+||.+.+ ..++.++.+|+..|..+.|-.++. .|++++.||.+++|++++
T Consensus 519 ~laT~SgD~TvKIW~is~-------------------fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSIST-------------------FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKT 578 (775)
T ss_pred eeEeccCCceEEEEEecc-------------------ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccc
Confidence 999999999999999999 999999999999999999999999 899999999999999987
Q ss_pred ccc
Q 018700 347 FLS 349 (351)
Q Consensus 347 ~~~ 349 (351)
...
T Consensus 579 ~eC 581 (775)
T KOG0319|consen 579 NEC 581 (775)
T ss_pred hhh
Confidence 543
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-33 Score=243.46 Aligned_cols=280 Identities=19% Similarity=0.351 Sum_probs=234.5
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (351)
-+..++++|....++.+- +.+.|++|++.-. .+...+..|.++|..++|+|.++.+++ ||.|.+|+||+
T Consensus 11 RvKglsFHP~rPwILtsl----HsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVS----GGDDykIkVWn 79 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSL----HSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVS----GGDDYKIKVWN 79 (1202)
T ss_pred cccceecCCCCCEEEEee----cCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEe----cCCccEEEEEe
Confidence 366788999999888763 5788888887653 245778899999999999999988888 58999999999
Q ss_pred cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018700 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (351)
.. +.+++.++.+|-+-|..+.|++.-++ ++++|+|.+|+||+..+.+.... ..||...|.|.+|+
T Consensus 80 Yk---------~rrclftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iav-----ltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 80 YK---------TRRCLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAV-----LTGHNHYVMCAQFH 144 (1202)
T ss_pred cc---------cceehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEE-----EecCceEEEeeccC
Confidence 98 78999999999999999999999997 77779999999999997544332 23788899999999
Q ss_pred CCCCcEEEeecCCeEEEEEcccCC----------------------------cCceeecce---eEEEEcCCCCCcEEEE
Q 018700 178 PHDVNAVAATCESSVQFWDLRSMG----------------------------KTNSIEHAH---VRNVDYDTKKKHLLVT 226 (351)
Q Consensus 178 ~~~~~l~~~~~d~~i~iwd~~~~~----------------------------~~~~~~~~~---v~~~~~~~~~~~~l~~ 226 (351)
|....+++++-|-+|++||+..-+ .+..+-.+| |+-++|+|.-+ ++++
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS 223 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS 223 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence 999999999999999999985211 011112345 99999999998 9999
Q ss_pred ecCCCeEEEEecccCCc-ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccc
Q 018700 227 AADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS 305 (351)
Q Consensus 227 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (351)
|++|..|++|.+...+. .+.+..+|.+.|+++-|+|.. .++++.+.|++|++||+.. .+
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~k-------------------Rt 283 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTK-------------------RT 283 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccc-------------------cc
Confidence 99999999999985221 345667999999999999998 9999999999999999998 88
Q ss_pred cceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+++++...+.-+.++-+|... ++ +++.|+-+.||.++.
T Consensus 284 ~v~tfrrendRFW~laahP~lN-Lf-AAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 284 SVQTFRRENDRFWILAAHPELN-LF-AAGHDSGMIVFKLER 322 (1202)
T ss_pred ceeeeeccCCeEEEEEecCCcc-ee-eeecCCceEEEEEcc
Confidence 8999987778899999999987 44 556677788888864
No 48
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=8.5e-33 Score=227.87 Aligned_cols=302 Identities=18% Similarity=0.300 Sum_probs=232.2
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEE-Eeee-cCCcceeeeeeCCCCCceEEEEeecCC
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLF-SHPNEIWDLSSCPFDQRIFSTVFSTGE 89 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~-~h~~~v~~i~~~~~~~~l~~~~~~~~~ 89 (351)
++...+.|.++..++.+.||+.|++ +..+.+|+|..-...+.. +.+. .-...|++++|++.+..|+++ +.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv----sg 234 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV----SG 234 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE----ec
Confidence 4556899999999999999999864 789999999865433222 2222 233689999999999998887 35
Q ss_pred cceEEEEEccccc-CCCCCCc--ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-cc
Q 018700 90 SYGAAIWQIPELY-GQLNSPQ--LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-SS 165 (351)
Q Consensus 90 d~~i~vw~~~~~~-~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~ 165 (351)
....+|+|-.... .....+. ..-+..-++|...++|.+|+|..+..+++++.||+++|||++......+++... ..
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 5578888865100 0000000 011223468999999999999998889999999999999999766555554433 23
Q ss_pred CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC--cCceeecce-----eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018700 166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (351)
Q Consensus 166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (351)
+..-+++.++|+|+++.|++|+.||.|.+||..... +...+..+| |+|++|+++|+ +|++-+.|+++++||+
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDL 393 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeec
Confidence 344578999999999999999999999999986543 333444455 99999999998 7999999999999999
Q ss_pred ccCCcceeEeeCCC--CceeEEEecCCCCCeEEEeeC------CCeEEEEEcCCCCCCCCCCcccccCCcccccccceee
Q 018700 239 RMLKAPIQELPGHT--HWTWAVCCNPEYDGFILSAGT------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY 310 (351)
Q Consensus 239 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (351)
|..++++....+-. .+-+.++|+|+. .+|++|.. .|.+.+||..+ ...+..+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t-------------------~d~v~ki 453 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT-------------------LDTVYKI 453 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc-------------------eeeEEEe
Confidence 99998888876533 456789999999 99999864 56899999998 7778887
Q ss_pred ccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 311 SDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 311 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
.-....|..+.|+|.-. .|..++.||.++||=
T Consensus 454 ~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLN-QIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCceEEEEeecchhh-heeeecCCCceEEEE
Confidence 77778899999999877 566777789998863
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=244.31 Aligned_cols=245 Identities=18% Similarity=0.255 Sum_probs=212.0
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID 141 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 141 (351)
......|..++|+|..++++++ --.|.|++||.. -+.++..+..|.++|..++|+|.++ +++++++
T Consensus 6 EskSsRvKglsFHP~rPwILts----lHsG~IQlWDYR---------M~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGD 71 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTS----LHSGVIQLWDYR---------MGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGD 71 (1202)
T ss_pred hcccccccceecCCCCCEEEEe----ecCceeeeehhh---------hhhHHhhhhccCCccceeeecCCCC-eEEecCC
Confidence 3456789999999999999996 477899999998 6788999999999999999999999 4667799
Q ss_pred CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC
Q 018700 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT 218 (351)
Q Consensus 142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~ 218 (351)
|..|++|+..+...... ..+|...|..+.|++.-+.+++++.|-+|+||+..+++++..+. +| |.|..|+|
T Consensus 72 DykIkVWnYk~rrclft-----L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFT-----LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHP 145 (1202)
T ss_pred ccEEEEEecccceehhh-----hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCC
Confidence 99999999986433332 23688899999999999999999999999999999999998887 55 99999999
Q ss_pred CCCcEEEEecCCCeEEEEecccCC----------------------------cceeEeeCCCCceeEEEecCCCCCeEEE
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLK----------------------------APIQELPGHTHWTWAVCCNPEYDGFILS 270 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s 270 (351)
... ++++++-|.+||+||+.-.. ...+.+++|...|+-++|+|.- .++++
T Consensus 146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVS 223 (1202)
T KOG0292|consen 146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVS 223 (1202)
T ss_pred ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEe
Confidence 887 89999999999999975211 0124567999999999999999 99999
Q ss_pred eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 271 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
|+.|..|++|.+... +.-.+.+..+|.+.|.++-|+|... +++|.|.|++|+|||+.+
T Consensus 224 G~DDRqVKlWrmnet-----------------KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNET-----------------KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cCCcceeeEEEeccc-----------------cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccc
Confidence 999999999999861 1334667789999999999999877 899999999999999975
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-33 Score=240.20 Aligned_cols=257 Identities=16% Similarity=0.226 Sum_probs=203.2
Q ss_pred Eeee-cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc------cC---------------------C------
Q 018700 59 EGLF-SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL------YG---------------------Q------ 104 (351)
Q Consensus 59 ~~~~-~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~------~~---------------------~------ 104 (351)
+.+. +|.+.|+++.||+||++||++ |.|+.|+||.+.+. .. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 4455 899999999999999999985 89999999998760 00 0
Q ss_pred -------CC-----------CCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 105 -------LN-----------SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 105 -------~~-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
.. .-..++++.+.+|.+.|..+.|+.++- |++++.|.+|++|++.....+ .++ .
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f--LLSSSMDKTVRLWh~~~~~CL-~~F-----~ 407 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF--LLSSSMDKTVRLWHPGRKECL-KVF-----S 407 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCCe--eEeccccccEEeecCCCccee-eEE-----e
Confidence 00 002345667889999999999999876 888899999999999864333 333 3
Q ss_pred cccceeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018700 167 MLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (351)
Q Consensus 167 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (351)
|...|+|++|+| |++++++|+-|+.++||++...+.+.-..... |++++|.|+|+ ..+.|+.+|.+++|+.+. .+.
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~-lk~ 485 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEG-LKL 485 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccC-CeE
Confidence 566999999999 57889999999999999998776554444334 99999999999 788899999999999986 333
Q ss_pred eeEeeC--C------CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc-
Q 018700 245 IQELPG--H------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED- 315 (351)
Q Consensus 245 ~~~~~~--~------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 315 (351)
...+.. | ...|+.+.|.|..+..++..+.|..|||+|.+. ..++..|+++..
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-------------------~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-------------------KDLVHKFKGFRNT 546 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc-------------------hhhhhhhcccccC
Confidence 333221 1 237999999998766677788999999999988 788888887543
Q ss_pred -eEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018700 316 -SVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS 349 (351)
Q Consensus 316 -~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 349 (351)
.-....|+.||+ +|+++++|..|++|+++.+..
T Consensus 547 ~SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 547 SSQISASFSSDGK-HIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred CcceeeeEccCCC-EEEEeecCceEEEEeCCCCcc
Confidence 335678999999 899999999999999866543
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=211.99 Aligned_cols=244 Identities=18% Similarity=0.286 Sum_probs=211.6
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+.+|.+.|++.+...+..+-++ ++.|-+.+|||.- ++..++.+ .|+..|.+++|+.|..+ +++
T Consensus 53 gtfeghkgavw~~~l~~na~~aas----aaadftakvw~a~---------tgdelhsf-~hkhivk~~af~~ds~~-llt 117 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAAS----AAADFTAKVWDAV---------TGDELHSF-EHKHIVKAVAFSQDSNY-LLT 117 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhh----hcccchhhhhhhh---------hhhhhhhh-hhhheeeeEEecccchh-hhc
Confidence 678899999999999887655555 3789999999987 67888888 79999999999999986 888
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcC
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD 217 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~ 217 (351)
++.+..++|||++..+.... +..+|...|..+-|....+.+++++.|++||+||.+++..+.++...+ |.++.++
T Consensus 118 gg~ekllrvfdln~p~App~----E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs 193 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKAPPK----EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS 193 (334)
T ss_pred cchHHHhhhhhccCCCCCch----hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec
Confidence 89999999999996544333 344778899999999999999999999999999999999999998777 9999999
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 297 (351)
++|+ +++-...+.|.+||..+.+ +++.++. ...|.+...+|+. .++++|+.|..++.||..+
T Consensus 194 ~dG~--ilTia~gssV~Fwdaksf~-~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~T------------- 255 (334)
T KOG0278|consen 194 QDGR--ILTIAYGSSVKFWDAKSFG-LLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNT------------- 255 (334)
T ss_pred cCCC--EEEEecCceeEEecccccc-ceeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccC-------------
Confidence 9997 4555666899999998744 6776653 5678999999999 9999999999999999999
Q ss_pred CCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 298 SPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 298 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++.+..+ ++|.++|.++.|+|+|. +.++|+.||+|++|.+.+
T Consensus 256 ------geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 256 ------GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ------CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecC
Confidence 7777776 89999999999999999 899999999999998764
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-31 Score=224.49 Aligned_cols=245 Identities=22% Similarity=0.362 Sum_probs=206.5
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+.+|.+.|.+++|+|+++.++++ +.++.+++|++. ..+....+..|...+..+.|+|+++. ++++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~----~~~g~i~i~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 69 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATG----SGDGTIKVWDLE---------TGELLRTLKGHTGPVRDVAASADGTY-LASG 69 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEe----ecCcEEEEEEee---------CCCcEEEEecCCcceeEEEECCCCCE-EEEE
Confidence 456899999999999998888875 679999999998 44566778889999999999999963 6677
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcC
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYD 217 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~ 217 (351)
+.++.|++|++.+........ .|...+.++.|+|+++.+++++.++.+++||+++++....+.... +.+++|+
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred cCCCeEEEEEcCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 789999999998643332222 445589999999997777777779999999999877766666222 9999999
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 297 (351)
|++. ++++++.++.|++||++. .+++..+..|...+.++.|+|++ ..+++++.|+.|++||++.
T Consensus 145 ~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~------------- 208 (289)
T cd00200 145 PDGT-FVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST------------- 208 (289)
T ss_pred CcCC-EEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC-------------
Confidence 9987 788888899999999986 66788888899999999999999 8888888899999999998
Q ss_pred CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++.+..+..|...+.++.|+|++. ++++++.|+.|++|++..
T Consensus 209 ------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 209 ------GKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ------CceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCC
Confidence 777778878888999999999976 788888899999999874
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-31 Score=253.16 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=202.4
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
+..|.+.|.+++|+|+++.++++ +.|+.|+||++....... .....+...+. +...+.+++|++.....+++++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latg----g~D~~I~iwd~~~~~~~~-~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATA----GVNKKIKIFECESIIKDG-RDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEE----eCCCEEEEEECCcccccc-cccccceEEec-ccCceeeEEeccCCCCEEEEEe
Confidence 45689999999999999888775 799999999976311000 00011223333 3568999999986554477778
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT 218 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~ 218 (351)
.|++|++||+.++.... ...+|...|++++|+| ++..|++++.|+.|++||++++..+..+.... +.++.|++
T Consensus 553 ~Dg~v~lWd~~~~~~~~-----~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 553 FEGVVQVWDVARSQLVT-----EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS 627 (793)
T ss_pred CCCeEEEEECCCCeEEE-----EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence 89999999998643322 2236777999999997 67889999999999999999988777776333 89999965
Q ss_pred -CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018700 219 -KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (351)
Q Consensus 219 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 297 (351)
++. ++++|+.|+.|++||++....++..+.+|...|.++.|. ++ .+|++++.|++|++||++.....
T Consensus 628 ~~g~-~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~--------- 695 (793)
T PLN00181 628 ESGR-SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG--------- 695 (793)
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc---------
Confidence 565 899999999999999987555677888999999999997 56 79999999999999999752100
Q ss_pred CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
....++..+.+|...+..++|+|++. +|++|+.|+.|++|+..
T Consensus 696 ----~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 696 ----INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKA 738 (793)
T ss_pred ----cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECC
Confidence 01356778899999999999999998 89999999999999965
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=200.95 Aligned_cols=250 Identities=18% Similarity=0.325 Sum_probs=200.6
Q ss_pred eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCC
Q 018700 55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR 133 (351)
Q Consensus 55 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 133 (351)
.+....+.+|.+.|+.++|+|-...++++ +|.|+.|++|+... .....+...+ .+|+..|.+++|+|.|+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAs---cg~Dk~vriw~~~~------~~s~~ck~vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILAS---CGTDKAVRIWSTSS------GDSWTCKTVLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEe---ecCCceEEEEecCC------CCcEEEEEeccccchheeeeeeecCCCc
Confidence 34567788999999999999973345555 48999999999872 1124444444 47999999999999999
Q ss_pred CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC---cCceeecce
Q 018700 134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG---KTNSIEHAH 210 (351)
Q Consensus 134 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~ 210 (351)
+ +++++.|.++.||.-..+.-.. .....+|...|.+++|+++|.+|++++.|+.|-||.+..+. +...++ +|
T Consensus 75 ~-La~aSFD~t~~Iw~k~~~efec---v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~H 149 (312)
T KOG0645|consen 75 Y-LASASFDATVVIWKKEDGEFEC---VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EH 149 (312)
T ss_pred E-EEEeeccceEEEeecCCCceeE---EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cc
Confidence 3 6666899999999866432111 23345888999999999999999999999999999998554 333444 55
Q ss_pred ---eEEEEcCCCCCcEEEEecCCCeEEEEecccC--CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRML--KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
|..+.|+|... +|++++.|.+|++|+-... -.+++++.+|...|.+++|+|.| ..|++++.|++++||....
T Consensus 150 tqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~- 226 (312)
T KOG0645|consen 150 TQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT- 226 (312)
T ss_pred cccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeecc-
Confidence 99999999887 9999999999999987631 24789999999999999999999 9999999999999999764
Q ss_pred CCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.- -..|+..+..+.|. ++ .|++++.|+.|++|.-..
T Consensus 227 ------------------~~----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 227 ------------------DL----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD 262 (312)
T ss_pred ------------------Cc----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence 11 12467789999999 44 799999999999998653
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=221.52 Aligned_cols=230 Identities=19% Similarity=0.338 Sum_probs=195.4
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~ 143 (351)
....|.|+.+. +..+++ |..|.+|+|||.. ...+.+.+.+|++.|.|+.|... ++++++.|.
T Consensus 196 ~skgVYClQYD--D~kiVS----GlrDnTikiWD~n---------~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDs 257 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVS----GLRDNTIKIWDKN---------SLECLKILTGHTGSVLCLQYDER---VIVSGSSDS 257 (499)
T ss_pred cCCceEEEEec--chhhhc----ccccCceEEeccc---------cHHHHHhhhcCCCcEEeeeccce---EEEecCCCc
Confidence 34688898884 456666 5899999999988 77889999999999999998754 577778999
Q ss_pred cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC--ceeecce---eEEEEcCC
Q 018700 144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDT 218 (351)
Q Consensus 144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~---v~~~~~~~ 218 (351)
+|++||+++++....++ .|...|..+.|+ +.++++++.|.++.+||+.+...+ ...-.+| |+.+.|+.
T Consensus 258 TvrvWDv~tge~l~tli-----hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLI-----HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred eEEEEeccCCchhhHHh-----hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence 99999999876655444 466789999997 478999999999999999876522 1222366 89999864
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES 298 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 298 (351)
+ ++++++.|.+|++|++.+ ...++++.+|...|-|+.+. + +++++|+.|.+|++||+..
T Consensus 331 --k-yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~-------------- 389 (499)
T KOG0281|consen 331 --K-YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIEC-------------- 389 (499)
T ss_pred --c-eEEEecCCceEEEEeccc-eeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccc--------------
Confidence 3 799999999999999998 77899999999999999875 3 8999999999999999999
Q ss_pred CcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+.++..+.+|+.-|.++.|.. + .+++|++||+|++||+..-
T Consensus 390 -----G~cLRvLeGHEeLvRciRFd~--k-rIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 390 -----GACLRVLEGHEELVRCIRFDN--K-RIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -----cHHHHHHhchHHhhhheeecC--c-eeeeccccceEEEEecccc
Confidence 999999999999999999975 4 6999999999999998753
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.4e-32 Score=205.61 Aligned_cols=247 Identities=15% Similarity=0.248 Sum_probs=211.6
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
+...+|...|.+++|+.+|..|++ |+.|+++.+|+++.. ....-...++|.+.|-.++|.|..+.++++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~las----gs~dktv~v~n~e~~-------r~~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLAS----GSFDKTVSVWNLERD-------RFRKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeee----cccCCceEEEEecch-------hhhhhhcccCCCcchhhheeCCCCCcceEE
Confidence 556789999999999999999998 489999999999821 222233467899999999999998887778
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcC
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD 217 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~ 217 (351)
++.|.+|++||+..++....+.... .-.-+.|+|+|.+++++..|..|.+.|.++.+.....+... ++.++|+
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~ 156 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN 156 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec
Confidence 8889999999999876666554433 45567899999999999999999999999888777666444 8899999
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 297 (351)
.++. +++.....|.|.|..... -+++..++.|.....||.|+|+| ++||+|+.|-.+.+||+..
T Consensus 157 ~~nd-~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~E------------- 220 (313)
T KOG1407|consen 157 NSND-LFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDE------------- 220 (313)
T ss_pred CCCC-EEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhH-------------
Confidence 7776 677677779999999987 55899999999999999999999 9999999999999999998
Q ss_pred CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.-+++.+..+.-+|+.+.|+.+|+ +||++++|..|-|=+++
T Consensus 221 ------LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 221 ------LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVE 261 (313)
T ss_pred ------hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecc
Confidence 888999999999999999999999 99999999998665544
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5e-33 Score=227.44 Aligned_cols=249 Identities=12% Similarity=0.244 Sum_probs=206.9
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+.+|+..|.++.|.|....|+.. ++.|+.|+||++.. ..++++++.+|..+|.+++|+++|.. +++
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~--------~~~~lrtf~gH~k~Vrd~~~s~~g~~-fLS 275 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYD--------DRRCLRTFKGHRKPVRDASFNNCGTS-FLS 275 (503)
T ss_pred eeccCCccccchhhhccceeeEEEe---cCCCceEEEEEEec--------CcceehhhhcchhhhhhhhccccCCe-eee
Confidence 5678999999999999955455554 58999999999983 57899999999999999999999996 888
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
++.|+.+++||.+++.......... .++++.|+|++ +.+++|+.|+.|+.||+++++.++.+. .| |..+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i 348 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDI 348 (503)
T ss_pred eecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeee
Confidence 8999999999999987666655544 79999999999 667788999999999999999887776 44 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 293 (351)
.|-++|+ .+++.++|++++||+.+. ..+++.. ..+....-++..+|.+ .+++.-+.|+.|.+|.+...-
T Consensus 349 ~F~~~g~-rFissSDdks~riWe~~~-~v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~------- 418 (503)
T KOG0282|consen 349 TFVDEGR-RFISSSDDKSVRIWENRI-PVPIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF------- 418 (503)
T ss_pred EEccCCc-eEeeeccCccEEEEEcCC-CccchhhcchhhccCcceecCCCC-CeehhhccCceEEEEeccccc-------
Confidence 9999999 799999999999999987 3344332 2334556788899999 999999999999999876511
Q ss_pred ccccCCcccccccceeecccc--ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 294 SLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
....-..+.+|. +.-..+.|||||+ +|++|..||.+.+||.++
T Consensus 419 ---------r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 419 ---------RLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred ---------ccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechh
Confidence 123344566774 3456789999999 899999999999999875
No 58
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=229.29 Aligned_cols=264 Identities=14% Similarity=0.184 Sum_probs=221.5
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 119 (351)
..+.+.+|+..... ..+.+ -.+-+.+..|.|.+++++.+ ...|.+.+||+. ....+.+.+.|
T Consensus 392 a~~SikiWn~~t~k---ciRTi--~~~y~l~~~Fvpgd~~Iv~G----~k~Gel~vfdla---------S~~l~Eti~AH 453 (888)
T KOG0306|consen 392 AGESIKIWNRDTLK---CIRTI--TCGYILASKFVPGDRYIVLG----TKNGELQVFDLA---------SASLVETIRAH 453 (888)
T ss_pred CCCcEEEEEccCcc---eeEEe--ccccEEEEEecCCCceEEEe----ccCCceEEEEee---------hhhhhhhhhcc
Confidence 44666666665432 11222 12478899999999888884 799999999998 56777788899
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC----Ccc---cccccccCcccceeeeEECCCCCcEEEeecCCeE
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK----NAQ---VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV 192 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~----~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 192 (351)
++.|++++.+||+.. +++++.|.+|++||..-... ..+ +.....-.....|.+++++||+++|+++--|+++
T Consensus 454 dgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV 532 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTV 532 (888)
T ss_pred ccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeE
Confidence 999999999999997 88889999999999752111 111 1111111223489999999999999999999999
Q ss_pred EEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018700 193 QFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (351)
Q Consensus 193 ~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 269 (351)
++|-+.+-+....+. +| |.|+..+||+. +++||+.|.+|++|-+.- +.+.+.+-+|...|.++.|-|.. .++.
T Consensus 533 kVyflDtlKFflsLY-GHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FF 608 (888)
T KOG0306|consen 533 KVYFLDTLKFFLSLY-GHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFF 608 (888)
T ss_pred EEEEecceeeeeeec-ccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccc-eeEE
Confidence 999999988777777 77 99999999998 999999999999999986 88999999999999999999988 9999
Q ss_pred EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 270 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+++.|+.|+-||-.. .+.++.+.+|...|++++.+|+|. ++++++.|.+|++|....
T Consensus 609 t~gKD~kvKqWDg~k-------------------Fe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEK-------------------FEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EecCcceEEeechhh-------------------hhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccC
Confidence 999999999999998 899999999999999999999999 899999999999998754
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-31 Score=222.87 Aligned_cols=261 Identities=16% Similarity=0.232 Sum_probs=216.7
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA- 118 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~- 118 (351)
....+++|+..... +. .....+.+.|+++.|+++|..|+++ ..+|.|.|||.. ..+.+..+.+
T Consensus 195 lg~~vylW~~~s~~--v~-~l~~~~~~~vtSv~ws~~G~~LavG----~~~g~v~iwD~~---------~~k~~~~~~~~ 258 (484)
T KOG0305|consen 195 LGQSVYLWSASSGS--VT-ELCSFGEELVTSVKWSPDGSHLAVG----TSDGTVQIWDVK---------EQKKTRTLRGS 258 (484)
T ss_pred ecceEEEEecCCCc--eE-EeEecCCCceEEEEECCCCCEEEEe----ecCCeEEEEehh---------hccccccccCC
Confidence 34577888876654 22 2222238999999999999999985 689999999998 5677778888
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 198 (351)
|...|-+++|+.. ++..++.|+.|..+|++..+.... ...+|...|..++|++++.++++|+.|+.+.|||..
T Consensus 259 h~~rvg~laW~~~---~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 259 HASRVGSLAWNSS---VLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred cCceeEEEeccCc---eEEEecCCCcEEEEEEecchhhhh----hhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 9999999999932 355668899999999997554444 245788899999999999999999999999999997
Q ss_pred cCCcCceeecce---eEEEEcCCCCCcEEEEec--CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-
Q 018700 199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG- 272 (351)
Q Consensus 199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~- 272 (351)
..+++..+. .| |..++|+|....+||+|+ .|+.|++||..+ +..+..+. ....|..|.|++....++.+-+
T Consensus 332 ~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 332 SPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD-TGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence 777777776 55 999999999888999876 689999999997 66677665 4688999999999844444433
Q ss_pred CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.++.|.||+..+ ...+..+.+|...|..++++|||. .+++|+.|.++++|++=+
T Consensus 409 s~n~i~lw~~ps-------------------~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 409 SENQITLWKYPS-------------------MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCcEEEEeccc-------------------cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccC
Confidence 477899999998 888999999999999999999999 899999999999999854
No 60
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=7.9e-31 Score=208.46 Aligned_cols=308 Identities=20% Similarity=0.368 Sum_probs=224.2
Q ss_pred ceEEEeeeeeC-CCCEEEEEEeCCC---------------------CCeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018700 29 TSFLTGTLSLK-EENEVHLLRLSSG---------------------GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS 86 (351)
Q Consensus 29 ~~~~~g~~~~~-~~~~i~~~~~~~~---------------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~ 86 (351)
..++.|++... .+|.|.++++... ..+........|.+.++.+.-++-++-.++++
T Consensus 93 ~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~as-- 170 (440)
T KOG0302|consen 93 AYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMKSIPHYGGINRVRVSRLGNEVLCAS-- 170 (440)
T ss_pred hhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhccccccccccccccccceeeecccCCcceeee--
Confidence 34455555443 4577777665521 11333345678899999999988866555544
Q ss_pred cCCcceEEEEEcccccCCC-------CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc
Q 018700 87 TGESYGAAIWQIPELYGQL-------NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV 159 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~ 159 (351)
-+..|.|+||++....... .....+++.++.+|...=+.++|||-....++++.--+.|++|...++ ...+
T Consensus 171 wse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g--~W~v 248 (440)
T KOG0302|consen 171 WSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG--SWKV 248 (440)
T ss_pred ecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC--ceee
Confidence 4788999999997543322 223567889999999999999999954432566544688999999874 3444
Q ss_pred ccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCce-eecce---eEEEEcCCCCCcEEEEecCCCeEE
Q 018700 160 QSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNS-IEHAH---VRNVDYDTKKKHLLVTAADESGIH 234 (351)
Q Consensus 160 ~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~-~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~ 234 (351)
-.....+|+..|..++|+|..+. +++++.||+|+|||+|.+..... +...| |+.+.|+..-. +|++|+.||+++
T Consensus 249 d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~ 327 (440)
T KOG0302|consen 249 DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLS 327 (440)
T ss_pred cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEE
Confidence 44556679999999999997655 56678999999999999843332 22345 99999999988 999999999999
Q ss_pred EEecccC--CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018700 235 LWDLRML--KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD 312 (351)
Q Consensus 235 i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
|||+|.. ++++..++-|..+|++|.|+|.....|++++.|.+|.+||+.....++.........-.+...++++...+
T Consensus 328 iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG 407 (440)
T KOG0302|consen 328 IWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG 407 (440)
T ss_pred EEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc
Confidence 9999964 46899999999999999999988789999999999999999875443322221111111112344544444
Q ss_pred ccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 313 YEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
...+..+.|++.-+.++++.+.|| +.||.
T Consensus 408 -Qke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 408 -QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred -hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 345889999999888999999998 45554
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2e-30 Score=231.53 Aligned_cols=301 Identities=16% Similarity=0.221 Sum_probs=232.6
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCC---------CeEEEEeeecCCcceeeeeeCCCCCceEE
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG---------TELICEGLFSHPNEIWDLSSCPFDQRIFS 82 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~ 82 (351)
+++....+-++..+|+..+|+.|.+. .++.+.+|+..+.. -+........|.+.|+|+.|+|||++|++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~--~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQV--LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCcc--ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 34456668899999999999998643 34555577766422 12222456689999999999999999998
Q ss_pred EEeecCCcceEEEEEcccc---------cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCC
Q 018700 83 TVFSTGESYGAAIWQIPEL---------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS 153 (351)
Q Consensus 83 ~~~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 153 (351)
|++|+.|.||..... .+..+-..++.+..+.+|...|..++|+|++.. +++++.|++|.||+..+.
T Consensus 87 ----GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~-lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 87 ----GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL-LVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred ----ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE-EEEecccceEEEEccccc
Confidence 589999999998731 123344567889999999999999999999883 555589999999999976
Q ss_pred CCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--------eeEEEEcCCCCCcEEE
Q 018700 154 NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------HVRNVDYDTKKKHLLV 225 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~v~~~~~~~~~~~~l~ 225 (351)
+ ....+ .+|...|..+.|.|-|+++++-+.|++|++|++.+-.....+... ++..+.|+|||. +|+
T Consensus 162 ~-~~~vl----~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~la 235 (942)
T KOG0973|consen 162 E-LLKVL----RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLA 235 (942)
T ss_pred e-eeeee----ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eec
Confidence 3 22222 367789999999999999999999999999997764444444311 189999999999 566
Q ss_pred Eec-C---CCeEEEEecccCCcceeEeeCCCCceeEEEecCC--------C----CC----eEEEeeCCCeEEEEEcCCC
Q 018700 226 TAA-D---ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE--------Y----DG----FILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 226 ~~~-~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------~----~~----~l~s~~~dg~i~iwd~~~~ 285 (351)
+.. - -.++.|.+..+ -+.-..+-+|..++.+++|+|. | .. .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~- 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL- 313 (942)
T ss_pred chhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-
Confidence 543 2 23688888765 4456778899999999999982 1 11 688999999999999977
Q ss_pred CCCCCCCcccccCCcccccccceeec-cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 286 NHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+++.... -....|.+++|+|||- .|..++.||+|.+.++++
T Consensus 314 ------------------~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 314 ------------------PRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEE 356 (942)
T ss_pred ------------------CCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcch
Confidence 55554442 3456899999999998 899999999999998864
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.1e-32 Score=213.72 Aligned_cols=249 Identities=18% Similarity=0.246 Sum_probs=199.6
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+.+|.+.|.+++=+|.....+++ |+.||.|+|||+. +..+..+++.|.+.|..+++.. +. +++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aS---Gs~DG~VkiWnls---------qR~~~~~f~AH~G~V~Gi~v~~-~~--~~t 124 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVAS---GSCDGEVKIWNLS---------QRECIRTFKAHEGLVRGICVTQ-TS--FFT 124 (433)
T ss_pred hhccccccccchhhcCcchhhhhhc---cccCceEEEEehh---------hhhhhheeecccCceeeEEecc-cc--eEE
Confidence 4568999999999999977444443 6899999999999 7788999999999999999988 33 778
Q ss_pred EecCCcEEEEEcCCCCCCcccc---------------------------cc-------cccCcccceeeeEECCCCCcEE
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQ---------------------------SK-------QSSGMLHYLSGGAWDPHDVNAV 184 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~---------------------------~~-------~~~~~~~~v~~~~~~~~~~~l~ 184 (351)
+++|.+|+.|.++.. ....+. .. ...--...+.++.|+|....++
T Consensus 125 vgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred ecCCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 899999999985531 000000 00 0000023567788888776655
Q ss_pred E-eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecC
Q 018700 185 A-ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (351)
Q Consensus 185 ~-~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 262 (351)
+ ++.|+.|.+||++++.++..+.... .+.++|+|.+ +.+++|++|..++.||+|....++....+|.+.|.++.|+|
T Consensus 204 as~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeeccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 5 4589999999999999988877555 8999999955 47999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-cccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018700 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVVV 341 (351)
Q Consensus 263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v 341 (351)
.| .-+++|+.|.+|+||..+. +.....+. ..-..|.++.||.|.+ ++++|++|+.|++
T Consensus 283 tG-~EfvsgsyDksIRIf~~~~-------------------~~SRdiYhtkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRl 341 (433)
T KOG0268|consen 283 TG-QEFVSGSYDKSIRIFPVNH-------------------GHSRDIYHTKRMQHVFCVKYSMDSK-YIISGSDDGNVRL 341 (433)
T ss_pred Cc-chhccccccceEEEeecCC-------------------CcchhhhhHhhhheeeEEEEecccc-EEEecCCCcceee
Confidence 99 9999999999999999987 32222221 1234699999999998 8999999999999
Q ss_pred eecC
Q 018700 342 ESVK 345 (351)
Q Consensus 342 w~~~ 345 (351)
|...
T Consensus 342 Wka~ 345 (433)
T KOG0268|consen 342 WKAK 345 (433)
T ss_pred eecc
Confidence 9864
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=1.1e-30 Score=202.91 Aligned_cols=282 Identities=18% Similarity=0.190 Sum_probs=212.2
Q ss_pred CCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC---------CCCCCcceeeeeeecccc
Q 018700 51 SGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG---------QLNSPQLERIAALDAHVG 121 (351)
Q Consensus 51 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~---------~~~~~~~~~~~~~~~h~~ 121 (351)
++........+..|...+.+.+|+|||..+++ |+.|..|+|.|++.... .........++++..|.+
T Consensus 98 ~e~~~yEt~ylt~HK~~cR~aafs~DG~lvAT----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 98 PEPSEYETKYLTSHKSPCRAAAFSPDGSLVAT----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD 173 (430)
T ss_pred CCCcccceEEEeecccceeeeeeCCCCcEEEc----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC
Confidence 33444555678899999999999999977766 68999999999983211 011112256788889999
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG 201 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 201 (351)
+|+++.|+|... ++++++.|++|++||+.+......... . ....+|.+++|+|.|.+|++|.....+++||+++-+
T Consensus 174 evn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~-~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 174 EVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKV-F--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred cccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHH-h--hccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 999999999988 466668999999999985322111111 1 123489999999999999999999999999999988
Q ss_pred cCceeec--ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCC-CceeEEEecCCCCCeEEEeeCC
Q 018700 202 KTNSIEH--AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHT-HWTWAVCCNPEYDGFILSAGTD 274 (351)
Q Consensus 202 ~~~~~~~--~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~l~s~~~d 274 (351)
+...-.+ +| |+++.+++.++ +.++++.||.|++||--. .+++.++. .|. ..|.+..|..++ +|+++.+.|
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~D 326 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKD 326 (430)
T ss_pred EeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCC-eEEeecCCc
Confidence 7654432 23 99999999998 999999999999999776 66777775 465 568999999999 999999999
Q ss_pred CeEEEEEcCCCCCCCCCC----------------c-------------ccccCCcccccccceee-ccccceEEEEEeCC
Q 018700 275 STVNLWLVSTSNHDELPS----------------E-------------SLVESPNQRANSLLNSY-SDYEDSVYGLAWSS 324 (351)
Q Consensus 275 g~i~iwd~~~~~~~~~~~----------------~-------------~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 324 (351)
..+++|.+.++..-..-. + ....+|+......+..+ .+|.+.++.+.-+|
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC
Confidence 999999998763211100 0 00122222222222222 37999999999999
Q ss_pred CCCceEEEeeeCCeEEEeec
Q 018700 325 REPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~ 344 (351)
.++ .+.+|+.|-.+|+|-=
T Consensus 407 ~~p-~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 407 VEP-AFMTCSDDFRARFWYR 425 (430)
T ss_pred CCC-ceeeecccceeeeeee
Confidence 999 8999999999999963
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=7.6e-30 Score=193.49 Aligned_cols=280 Identities=17% Similarity=0.226 Sum_probs=228.4
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
...+..+.++.++.+++.|+ .+..+.+|.+... .........+|.+.|-.++|.|....+++++ +.|.+|++
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs----~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~ata---s~dk~ir~ 91 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGS----FDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATA---SGDKTIRI 91 (313)
T ss_pred hhcceEEEEcccCceeeecc----cCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEe---cCCceEEE
Confidence 34566677788899999886 4678888998887 4444456778999999999999888777764 78999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
||+. ..++........+.+ -+.|+|+|.+ ++++..|..|...|.++.......... ..+..++
T Consensus 92 wd~r---------~~k~~~~i~~~~eni-~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~------~e~ne~~ 154 (313)
T KOG1407|consen 92 WDIR---------SGKCTARIETKGENI-NITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFK------FEVNEIS 154 (313)
T ss_pred EEec---------cCcEEEEeeccCcce-EEEEcCCCCE-EEEecCcccEEEEEecccceeehhccc------ceeeeee
Confidence 9998 678877775544444 4789999996 777788899999999864433332222 2788899
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT 252 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 252 (351)
|+-++..++.....|+|.|.....-+++..++ +| ..|++|+|+|+ +|++|+.|..+.+||+.. --+++.+..+.
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~E-LiC~R~isRld 231 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGR-YFATGSADALVSLWDVDE-LICERCISRLD 231 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCc-eEeeccccceeeccChhH-hhhheeecccc
Confidence 99777777777788999999999888888888 66 88999999999 799999999999999987 55788898999
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS 332 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 332 (351)
-+|..+.|+.+| ++||++++|..|-|=++++ +..+..++ +.++-..++|+|... +||-
T Consensus 232 wpVRTlSFS~dg-~~lASaSEDh~IDIA~vet-------------------Gd~~~eI~-~~~~t~tVAWHPk~~-LLAy 289 (313)
T KOG1407|consen 232 WPVRTLSFSHDG-RMLASASEDHFIDIAEVET-------------------GDRVWEIP-CEGPTFTVAWHPKRP-LLAY 289 (313)
T ss_pred CceEEEEeccCc-ceeeccCccceEEeEeccc-------------------CCeEEEee-ccCCceeEEecCCCc-eeeE
Confidence 999999999999 9999999999999999998 88887774 577889999999987 7877
Q ss_pred eeeC---------CeEEEeecC
Q 018700 333 LSYD---------GRVVVESVK 345 (351)
Q Consensus 333 ~~~d---------g~v~vw~~~ 345 (351)
++.| |.|+++-++
T Consensus 290 A~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 290 ACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EecCCCCccccccceeEEecCC
Confidence 6644 577877654
No 65
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=1.8e-29 Score=222.60 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=174.4
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc---cccc
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV---QSKQ 163 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~---~~~~ 163 (351)
|+.++.|++|+.. ....+..+.+|.+.|.+++|+|+...++++++.|++|+|||+.+....... ....
T Consensus 50 GG~~gvI~L~~~~---------r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQM---------RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCceeEEEeeecC---------CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 5678899999987 345678889999999999999985445777799999999999864321110 1112
Q ss_pred ccCcccceeeeEECCCCCcE-EEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018700 164 SSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (351)
..+|...|.+++|+|++..+ ++++.|+.|++||+++++....+.... |.+++|+|+|. +|++++.|+.|+|||+++
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs- 198 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK- 198 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC-
Confidence 34678899999999998765 578899999999999988766665334 99999999998 889999999999999998
Q ss_pred CcceeEeeCCCCceeEE-----EecCCCCCeEEEeeCCC----eEEEEEcCCCCCCCCCCcccccCCcccccccceeec-
Q 018700 242 KAPIQELPGHTHWTWAV-----CCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS- 311 (351)
Q Consensus 242 ~~~~~~~~~~~~~v~~~-----~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (351)
++.+.++.+|.+.+... .|++++ .+|++++.|+ +|+|||++.. ..++....
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~------------------~~pl~~~~l 259 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT------------------TSALVTMSI 259 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC------------------CCceEEEEe
Confidence 66788899998765432 345888 7888877664 7999999951 34454443
Q ss_pred -cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 312 -DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 312 -~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+...+...-..+++. ++++|+.|+.|++|++..
T Consensus 260 d~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 260 DNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccC
Confidence 2333333333344566 889999999999999853
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=8.3e-29 Score=184.43 Aligned_cols=292 Identities=16% Similarity=0.223 Sum_probs=222.0
Q ss_pred ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC------------CCeEEEEeeecCCcceeeeeeCCCCCceEE
Q 018700 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG------------GTELICEGLFSHPNEIWDLSSCPFDQRIFS 82 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~ 82 (351)
+.+.+.++.++|.+...++|+. ...+++..+... ...+..++-..|.+.|.|.+|+|.|+.|++
T Consensus 31 dsqairav~fhp~g~lyavgsn----skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSN----SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred chhheeeEEecCCCceEEeccC----CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 4566778889999999999864 244555544421 123455667789999999999999988877
Q ss_pred EEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC---CCCcEEEE--ecCCcEEEEEcCCCCCCc
Q 018700 83 TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS---GRHDKLVS--IDEENIFLWSLDCSNKNA 157 (351)
Q Consensus 83 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~--~~d~~v~iwd~~~~~~~~ 157 (351)
|+.|.+|++..+..+... ....-..+.-|.+.|..++|..+ +.. ++++ ..|..|++-|...+....
T Consensus 107 ----gsndk~ik~l~fn~dt~~----~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 107 ----GSNDKTIKVLPFNADTCN----ATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred ----cCCCceEEEEeccccccc----ccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 589999999877632111 11223456779999999999653 333 4444 346667776766543332
Q ss_pred ccccccccCcccceeee-EECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--------e-eEEEEcCCCCCcEEEEe
Q 018700 158 QVQSKQSSGMLHYLSGG-AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H-VRNVDYDTKKKHLLVTA 227 (351)
Q Consensus 158 ~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~-v~~~~~~~~~~~~l~~~ 227 (351)
...+|+.-|.++ .| ++-.+++|+.|.+|++||++-..++.++... . |.+++..|.|+ +|++|
T Consensus 178 -----a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg 249 (350)
T KOG0641|consen 178 -----ALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASG 249 (350)
T ss_pred -----eecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeec
Confidence 234566666665 45 4678889999999999999988877766522 1 99999999999 99999
Q ss_pred cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc
Q 018700 228 ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307 (351)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (351)
..|....+||+|- +++++.+..|...|.++.|+|.. .|+++++.|..|++-|++-.- ...-++
T Consensus 250 ~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdl---------------a~el~~ 312 (350)
T KOG0641|consen 250 HADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDL---------------AHELPI 312 (350)
T ss_pred cCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccch---------------hhcCce
Confidence 9999999999996 88999999999999999999998 999999999999999997410 012344
Q ss_pred eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.....|...+..+.|+|..- -+++.+.|.++.+|-++
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 55667888899999999876 68899999999999875
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=6.9e-32 Score=216.72 Aligned_cols=259 Identities=17% Similarity=0.257 Sum_probs=213.4
Q ss_pred CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
+.+..|.+|+...++. -....+.+..+.|+++.|.+++..++++ +.|+.+++|++. ..+...++.+
T Consensus 194 g~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~~~iAa----s~d~~~r~Wnvd---------~~r~~~TLsG 259 (459)
T KOG0288|consen 194 GSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNKHVIAA----SNDKNLRLWNVD---------SLRLRHTLSG 259 (459)
T ss_pred chhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCceEEee----cCCCceeeeecc---------chhhhhhhcc
Confidence 4677788888777652 2346677888999999999999999986 799999999998 7889999999
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 198 (351)
|++.|+++.|...... ++.++.|.+|++||+........++... .+.++..+ ...++++-.|++|++||++
T Consensus 260 HtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred cccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEecc
Confidence 9999999999888775 6777899999999999755444444433 56666665 3557777889999999999
Q ss_pred cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC----CCceeEEEecCCCCCeEEEeeC
Q 018700 199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH----THWTWAVCCNPEYDGFILSAGT 273 (351)
Q Consensus 199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~ 273 (351)
+..+....+.+. |.++..++++. -+.+.+.|.++.++|++. ....+.+... ....+.+.|||++ .|+++|+.
T Consensus 331 s~~~~~sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~ 407 (459)
T KOG0288|consen 331 SADKTRSVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSA 407 (459)
T ss_pred CCceeeEeecCcceeeEeeccCCe-EEeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCC-ceeeeccC
Confidence 999988888555 99999999998 566679999999999997 5555555432 2347899999999 99999999
Q ss_pred CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc--eEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
||.|+||++.+ +++...+..... .|++++|+|.|. .+++++.++.+.+|.
T Consensus 408 dgsv~iW~v~t-------------------gKlE~~l~~s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 408 DGSVYIWSVFT-------------------GKLEKVLSLSTSNAAITSLSWNPSGS-GLLSADKQKAVTLWT 459 (459)
T ss_pred CCcEEEEEccC-------------------ceEEEEeccCCCCcceEEEEEcCCCc-hhhcccCCcceEecC
Confidence 99999999998 777766655433 599999999999 788999999999994
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-29 Score=190.00 Aligned_cols=278 Identities=15% Similarity=0.216 Sum_probs=216.6
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (351)
++..+..+.++.-.+. .+.+..+++|+ .....+.+...+|..+|.+++.+.|+..+++ +|.|..+.+||
T Consensus 19 aV~avryN~dGnY~lt----cGsdrtvrLWN---p~rg~liktYsghG~EVlD~~~s~Dnskf~s----~GgDk~v~vwD 87 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLT----CGSDRTVRLWN---PLRGALIKTYSGHGHEVLDAALSSDNSKFAS----CGGDKAVQVWD 87 (307)
T ss_pred ceEEEEEccCCCEEEE----cCCCceEEeec---ccccceeeeecCCCceeeecccccccccccc----CCCCceEEEEE
Confidence 3444444554433322 23456665555 3344567889999999999999999999888 48999999999
Q ss_pred cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC-CcccccccccCcccceeeeEE
Q 018700 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-NAQVQSKQSSGMLHYLSGGAW 176 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~ 176 (351)
+. +++.++.+++|.+.|+.++|+.+.. ++++++.|.++++||.+.... +.+++. .....|.++..
T Consensus 88 V~---------TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild----ea~D~V~Si~v 153 (307)
T KOG0316|consen 88 VN---------TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD----EAKDGVSSIDV 153 (307)
T ss_pred cc---------cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh----hhcCceeEEEe
Confidence 99 8899999999999999999999888 355558899999999985432 222222 12347888887
Q ss_pred CCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCce
Q 018700 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT 255 (351)
Q Consensus 177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 255 (351)
+ +..|++|+.||+++.||++.|+...... ++ |++++|+++++ ..+.++-|+++++.|-.+ ++.++.+++|...-
T Consensus 154 ~--~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~n-c~La~~l~stlrLlDk~t-GklL~sYkGhkn~e 228 (307)
T KOG0316|consen 154 A--EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGN-CSLASSLDSTLRLLDKET-GKLLKSYKGHKNME 228 (307)
T ss_pred c--ccEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCC-EEEEeeccceeeecccch-hHHHHHhcccccce
Confidence 5 4679999999999999999998777666 56 99999999998 777799999999999987 88899999998765
Q ss_pred eEE--EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce-EEEEEeCCCCCceEEE
Q 018700 256 WAV--CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFAS 332 (351)
Q Consensus 256 ~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s 332 (351)
..+ +++... ..+++|++||.|.+||+.. ...+..+..+... |.+++++|.-. -|.+
T Consensus 229 ykldc~l~qsd-thV~sgSEDG~Vy~wdLvd-------------------~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~ 287 (307)
T KOG0316|consen 229 YKLDCCLNQSD-THVFSGSEDGKVYFWDLVD-------------------ETQISKLSVVSTVIVTDLSCHPTMD-DFIT 287 (307)
T ss_pred eeeeeeecccc-eeEEeccCCceEEEEEecc-------------------ceeeeeeccCCceeEEeeecccCcc-ceeE
Confidence 544 455555 8999999999999999998 7888888888777 89999999877 3444
Q ss_pred eeeCCeEEEeecCcc
Q 018700 333 LSYDGRVVVESVKPF 347 (351)
Q Consensus 333 ~~~dg~v~vw~~~~~ 347 (351)
+. ++.+.+|.-+.+
T Consensus 288 A~-~~~~~~~~~~~y 301 (307)
T KOG0316|consen 288 AT-GHGDLFWYQENY 301 (307)
T ss_pred ec-CCceeceeehhh
Confidence 44 345667755443
No 69
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=3.2e-29 Score=221.06 Aligned_cols=253 Identities=15% Similarity=0.174 Sum_probs=176.3
Q ss_pred CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCC-CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018700 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120 (351)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 120 (351)
+.+.++.++..........+.+|.+.|.+++|+|+. ..|++ ++.|++|+||++....... .....++..+.+|.
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLAS----gS~DgtIrIWDi~t~~~~~-~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILAS----GSEDLTIRVWEIPHNDESV-KEIKDPQCILKGHK 125 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEE----EeCCCeEEEEECCCCCccc-cccccceEEeecCC
Confidence 344445555433333456778999999999999974 45555 4799999999997311000 00013455678999
Q ss_pred cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018700 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 200 (351)
..|.+++|+|++..++++++.|++|+|||+.++.....+. +...|.+++|+|+|..|++++.|+.|++||++++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 9999999999998645566889999999999754332221 2347999999999999999999999999999999
Q ss_pred CcCceeecce--------eEEEEcCCCCCcEEEEecCC----CeEEEEecccCCcceeEeeCCC--CceeEEEecCCCCC
Q 018700 201 GKTNSIEHAH--------VRNVDYDTKKKHLLVTAADE----SGIHLWDLRMLKAPIQELPGHT--HWTWAVCCNPEYDG 266 (351)
Q Consensus 201 ~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ 266 (351)
+.+..+. +| +....|++++. ++++++.| +.|+|||++....++..+..+. +.+...-..+++ .
T Consensus 200 ~~i~tl~-gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~ 276 (568)
T PTZ00420 200 EIASSFH-IHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-L 276 (568)
T ss_pred cEEEEEe-cccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-C
Confidence 8877665 34 22334568887 56665555 4799999997666776654332 333333334456 8
Q ss_pred eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018700 267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (351)
Q Consensus 267 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (351)
++++|+.|+.|++|++.... ...+..+. +..++.+++|.|..
T Consensus 277 l~lsGkGD~tIr~~e~~~~~-----------------~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGS-----------------IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCeEEEEEccCCc-----------------EEeecccc-cCCCccceEEcccc
Confidence 99999999999999997610 11222222 45667788888853
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.3e-31 Score=205.54 Aligned_cols=276 Identities=13% Similarity=0.217 Sum_probs=237.0
Q ss_pred ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC-----eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018700 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT-----ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (351)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw 96 (351)
..++|+++.++.|+ -++-|.+|++-...- ......+.-+..+|.|+.|+.|...|++ |+.||.|++|
T Consensus 219 A~FSPDgqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs----GsqDGkIKvW 290 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS----GSQDGKIKVW 290 (508)
T ss_pred eeeCCCCceEeecc----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc----cCcCCcEEEE
Confidence 44788999888876 478899998875421 2223456678899999999999999888 5899999999
Q ss_pred EcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 97 QIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
.+. ++.+++.+. .|+..|+|+.|+.|+.. +++++.|.++++.-+..++.... ..+|.+.|+...
T Consensus 291 ri~---------tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE-----frGHsSyvn~a~ 355 (508)
T KOG0275|consen 291 RIE---------TGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE-----FRGHSSYVNEAT 355 (508)
T ss_pred EEe---------cchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH-----hcCccccccceE
Confidence 999 788888886 89999999999999996 77788999999999997654433 347888999999
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG- 250 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 250 (351)
|.++|.++++++.||+|++|+..+.+++.++.... |+++-.-|.++.-++++....+|++.++. ++.++.+..
T Consensus 356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSG 433 (508)
T KOG0275|consen 356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSG 433 (508)
T ss_pred EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEEeeeccC
Confidence 99999999999999999999999999999988554 88888888887788889999999999987 677888763
Q ss_pred --CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCc
Q 018700 251 --HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW 328 (351)
Q Consensus 251 --~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 328 (351)
..+...+.+.+|.| .++++.+.|+.++.|...+ +.+-.++..|+..|.+++-+|...
T Consensus 434 kREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~s-------------------G~LE~tl~VhEkdvIGl~HHPHqN- 492 (508)
T KOG0275|consen 434 KREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLS-------------------GKLERTLPVHEKDVIGLTHHPHQN- 492 (508)
T ss_pred CccCCceEEEEecCCC-cEEEEEccCcEEEEEEeec-------------------CceeeeeecccccccccccCcccc-
Confidence 22445667789999 9999999999999999998 899999999999999999999887
Q ss_pred eEEEeeeCCeEEEee
Q 018700 329 IFASLSYDGRVVVES 343 (351)
Q Consensus 329 ~l~s~~~dg~v~vw~ 343 (351)
++|+-+.||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 899999999999996
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=214.84 Aligned_cols=264 Identities=18% Similarity=0.277 Sum_probs=217.8
Q ss_pred CCCEEEEEEeCCCCC------eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee
Q 018700 40 EENEVHLLRLSSGGT------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI 113 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 113 (351)
.+|.+..+.+....+ ......+.+|...|.++++|.+...+++ +..+.+++|+.. +.+++
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-----ga~~SikiWn~~---------t~kci 407 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-----GAGESIKIWNRD---------TLKCI 407 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-----cCCCcEEEEEcc---------Cccee
Confidence 456666666665222 1223457799999999999998766655 466799999988 78888
Q ss_pred eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEE
Q 018700 114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQ 193 (351)
Q Consensus 114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 193 (351)
+++.. +-+.+..|.|.+++ ++.+...|.+.+||+.......... .|...+++++.+||+..+++++.|.+|+
T Consensus 408 RTi~~--~y~l~~~Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~-----AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 408 RTITC--GYILASKFVPGDRY-IVLGTKNGELQVFDLASASLVETIR-----AHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred EEecc--ccEEEEEecCCCce-EEEeccCCceEEEEeehhhhhhhhh-----ccccceeeeeecCCCCceEEecCCcEEE
Confidence 88854 38899999999885 7778889999999999644333322 5677999999999999999999999999
Q ss_pred EEEccc-----CCcC--------ceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE
Q 018700 194 FWDLRS-----MGKT--------NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259 (351)
Q Consensus 194 iwd~~~-----~~~~--------~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 259 (351)
+||..- +... .+++... |.|+++|||++ +++++--|.++++|-+.+.+ ....+.+|.-||.++.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee-eeeeecccccceeEEe
Confidence 999752 1111 2222222 99999999999 89999999999999999844 6777889999999999
Q ss_pred ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018700 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339 (351)
Q Consensus 260 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 339 (351)
.+||+ .+++||+.|..|++|-+.. +.+..++-+|.+.|.++.|.|... ++.++|.|+.|
T Consensus 558 IS~DS-klivTgSADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kv 616 (888)
T KOG0306|consen 558 ISPDS-KLIVTGSADKNVKIWGLDF-------------------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKV 616 (888)
T ss_pred ccCCc-CeEEeccCCCceEEecccc-------------------chhhhhhhcccCceeEEEEcccce-eEEEecCcceE
Confidence 99999 9999999999999999999 999999999999999999999776 89999999999
Q ss_pred EEeecCccc
Q 018700 340 VVESVKPFL 348 (351)
Q Consensus 340 ~vw~~~~~~ 348 (351)
+-||-.++.
T Consensus 617 KqWDg~kFe 625 (888)
T KOG0306|consen 617 KQWDGEKFE 625 (888)
T ss_pred Eeechhhhh
Confidence 999987654
No 72
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.2e-29 Score=222.54 Aligned_cols=234 Identities=15% Similarity=0.215 Sum_probs=177.3
Q ss_pred eeecCCcceeeeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 60 GLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
.+.+|.+.|.+++|+| ++..|+++ +.|++|++|++..... ......++..+.+|...|.+++|+|++..++++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSg----S~DgtIkIWdi~~~~~--~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTA----SEDGTIMGWGIPEEGL--TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEE----eCCCEEEEEecCCCcc--ccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 4678999999999999 66666664 7999999999973110 001124567889999999999999987655777
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEEE
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNV 214 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~~ 214 (351)
++.|++|+|||+.++.... ...+|...|.+++|+|++..|++++.|+.|++||+++++.+..+. .| ...+
T Consensus 144 gs~DgtVrIWDl~tg~~~~-----~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~ 217 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVE-----VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRC 217 (493)
T ss_pred EeCCCEEEEEECCCCeEEE-----EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEE
Confidence 7899999999998754322 223566789999999999999999999999999999988776665 33 5577
Q ss_pred EcCCCCCcEEEEe---cCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEee-CCCeEEEEEcCCCCCCC
Q 018700 215 DYDTKKKHLLVTA---ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHDE 289 (351)
Q Consensus 215 ~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 289 (351)
.|.+++..++.+| +.|+.|++||+++...++.....+. ..+....|++++ .+|++++ .|+.|++||+..
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~----- 291 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMN----- 291 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeC-----
Confidence 8898887444444 3579999999998666666555333 456667789999 7888777 599999999997
Q ss_pred CCCcccccCCcccccccceeecc-ccceEEEEEeCCC
Q 018700 290 LPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR 325 (351)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 325 (351)
+.++..... +..++.+++|.|.
T Consensus 292 --------------~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 292 --------------ERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred --------------CceEEEeeccCCCCCcceEeccc
Confidence 555544432 3456777888874
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-30 Score=210.55 Aligned_cols=276 Identities=16% Similarity=0.255 Sum_probs=220.4
Q ss_pred eEeeeecCCCCc-ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 17 RCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 17 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
..++.+.++|.. +-|++.. .-.+.++..... ...+.+......|.++.|..||+.|++ |+..|.|+|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~Llaa----GD~sG~V~v 94 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAA----GDESGHVKV 94 (487)
T ss_pred CcceeEecCCCCCCceEEec-----ccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEc----cCCcCcEEE
Confidence 456666666643 4455532 223444333221 122445567889999999999988777 589999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
+|+. +...++.+.+|+.+|..+.|+|.+..+++.+++|+.+++||+.+.. + .....+|+..|.+.+
T Consensus 95 fD~k---------~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v-~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 95 FDMK---------SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----V-QAELSGHTDYVRCGD 160 (487)
T ss_pred eccc---------cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----E-EEEecCCcceeEeec
Confidence 9966 4566788999999999999999998766667889999999999643 2 334568899999999
Q ss_pred ECCCCC-cEEEeecCCeEEEEEcccC-CcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018700 176 WDPHDV-NAVAATCESSVQFWDLRSM-GKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT 252 (351)
Q Consensus 176 ~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 252 (351)
|+|... .+++|+.||.|++||++.. ..+..+.+++ |..+.+-|.|. ++++++. ..+++||+-..++.+..+..|.
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAgG-n~vkVWDl~~G~qll~~~~~H~ 238 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAGG-NSVKVWDLTTGGQLLTSMFNHN 238 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcCC-CeEEEEEecCCceehhhhhccc
Confidence 999766 5678899999999999987 6677777777 99999999998 7777665 5899999997677777777799
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS 332 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 332 (351)
..|+|+++..++ ..|++++-|+.+++||+.+ .+.+..+. ..++|.+++.+|+++ .++.
T Consensus 239 KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~-------------------~Kvv~s~~-~~~pvLsiavs~dd~-t~vi 296 (487)
T KOG0310|consen 239 KTVTCLRLASDS-TRLLSGSLDRHVKVFDTTN-------------------YKVVHSWK-YPGPVLSIAVSPDDQ-TVVI 296 (487)
T ss_pred ceEEEEEeecCC-ceEeecccccceEEEEccc-------------------eEEEEeee-cccceeeEEecCCCc-eEEE
Confidence 999999999999 9999999999999999887 78887775 467899999999988 7889
Q ss_pred eeeCCeEEEe
Q 018700 333 LSYDGRVVVE 342 (351)
Q Consensus 333 ~~~dg~v~vw 342 (351)
|-.+|.+.+=
T Consensus 297 GmsnGlv~~r 306 (487)
T KOG0310|consen 297 GMSNGLVSIR 306 (487)
T ss_pred ecccceeeee
Confidence 9889987665
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.2e-30 Score=203.93 Aligned_cols=248 Identities=17% Similarity=0.300 Sum_probs=202.3
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCC--CCcEEE
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG--RHDKLV 138 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~ 138 (351)
-+.|++.|.++... .+.++++ +.||.+++|+.. ++...++.+|.++|.+++|.-.+ ...+++
T Consensus 101 ~~~hdDWVSsv~~~--~~~Iltg----sYDg~~riWd~~----------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTG----SYDGTSRIWDLK----------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred cccchhhhhhhccc--CceEEEe----ecCCeeEEEecC----------CceEEEEecCCcceeeeEEEecCCccceEEE
Confidence 45689999998887 6788885 699999999986 68888999999999988885433 224677
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC------------------
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM------------------ 200 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------------ 200 (351)
++.|.++++|.++.+......... ..||...|.+++..+++..+++++.|..|.+|+..+.
T Consensus 165 as~Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred ecCCceEEEEEecCchhhhhHHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 799999999999876554443332 2389999999999999999999999999999993211
Q ss_pred -------CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE
Q 018700 201 -------GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS 270 (351)
Q Consensus 201 -------~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 270 (351)
.++..+. +| |.++.|++.+ .+++++.|.+|+.||+.. +....++. ....++++..+|.. .+|++
T Consensus 244 ~~~~~~r~P~vtl~-GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDlet-g~~~~~~~-~~ksl~~i~~~~~~-~Ll~~ 317 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLE-GHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLET-GGLKSTLT-TNKSLNCISYSPLS-KLLAS 317 (423)
T ss_pred hhcccccCceEEec-ccccceeeEEEcCCC--ceEeecccceEEEEEeec-ccceeeee-cCcceeEeeccccc-ceeee
Confidence 1122222 55 9999999844 799999999999999998 55666665 36789999999988 99999
Q ss_pred eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 271 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
|+.|..|++||.+.+.. .-..+++.+|.+.|.++.|+|...++|++++.|+++++||++.-
T Consensus 318 gssdr~irl~DPR~~~g----------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDG----------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred cCCCCceeecCCCCCCC----------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999998321 34566788999999999999999999999999999999999853
No 75
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7e-29 Score=217.84 Aligned_cols=253 Identities=12% Similarity=0.143 Sum_probs=179.7
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC-CCCCcce---eeeeeeccccceeEEEecC-CCCCcEEEEe
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ-LNSPQLE---RIAALDAHVGKINCVLWWS-SGRHDKLVSI 140 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~---~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~ 140 (351)
..|.....++++..++++ +.+.....|+......- .....++ ....+.+|.+.|++++|+| ++. ++++++
T Consensus 21 ~~i~~~~~~~d~~~~~~~----n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS 95 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIAC----NDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTAS 95 (493)
T ss_pred eccccccccCCCCCcEeE----CCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEe
Confidence 344555556665556554 45555666664310000 0000111 1124679999999999999 555 477779
Q ss_pred cCCcEEEEEcCCCCCCcc--cccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 141 DEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
.|++|++||+.+...... .......+|...|.+++|+|++ +.|++++.|+.|++||+++++....+. .| |.++
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sl 174 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSL 174 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEE
Confidence 999999999986432111 1112345788899999999986 578899999999999999988777665 34 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc-eeEEEecCCCCCeEEEee----CCCeEEEEEcCCCCCCC
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW-TWAVCCNPEYDGFILSAG----TDSTVNLWLVSTSNHDE 289 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~ 289 (351)
+|+|++. +|++++.|+.|++||+++ ++.+..+.+|... +..+.|.+++ ..+++++ .|+.|++||++..
T Consensus 175 a~spdG~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~---- 247 (493)
T PTZ00421 175 EWNLDGS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKM---- 247 (493)
T ss_pred EEECCCC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCC----
Confidence 9999998 899999999999999998 6678888888765 4567899988 5666543 4789999999861
Q ss_pred CCCcccccCCcccccccceeeccc-cceEEEEEeCCCCCceEEEee-eCCeEEEeecCc
Q 018700 290 LPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSREPWIFASLS-YDGRVVVESVKP 346 (351)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~ 346 (351)
..++.....+ ...+....|++++. +|++++ .|+.|++|++.+
T Consensus 248 --------------~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 248 --------------ASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred --------------CCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeC
Confidence 2333333322 33456678999998 677666 599999999975
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.7e-29 Score=192.64 Aligned_cols=244 Identities=15% Similarity=0.174 Sum_probs=204.0
Q ss_pred cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--
Q 018700 63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-- 140 (351)
Q Consensus 63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-- 140 (351)
.-.+.|+++.|+++|..++++ +.|.+++|||.. .++.+.++..++-.|..++|...... ++.++
T Consensus 12 ~~~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~---------~g~~~~ti~skkyG~~~~~Fth~~~~-~i~sStk 77 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITS----SEDDSLRLYDSL---------SGKQVKTINSKKYGVDLACFTHHSNT-VIHSSTK 77 (311)
T ss_pred cCCCceeEEEecCCCCEEEEe----cCCCeEEEEEcC---------CCceeeEeecccccccEEEEecCCce-EEEccCC
Confidence 356899999999999999885 688899999998 67888888888888999999877775 45443
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKK 220 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~ 220 (351)
.|.+|+..++.+.+. . ....||...|.+++.+|-+..+++++.|++|++||++..++...+....-..++|+|+|
T Consensus 78 ~d~tIryLsl~dNky-l----RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~G 152 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKY-L----RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEG 152 (311)
T ss_pred CCCceEEEEeecCce-E----EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCC
Confidence 489999999986432 2 23458899999999999999999999999999999998888777775556678999999
Q ss_pred CcEEEEecCCCeEEEEecccC-CcceeEeeCC---CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018700 221 KHLLVTAADESGIHLWDLRML-KAPIQELPGH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (351)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 296 (351)
- ++|++.....|++||+|.. +.|..++... ....+.|.|+|+| ++|+.+...+.+++.|.-.
T Consensus 153 L-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~------------ 218 (311)
T KOG1446|consen 153 L-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD------------ 218 (311)
T ss_pred c-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC------------
Confidence 7 7888888779999999986 4466666533 5678999999999 8999999999999999998
Q ss_pred cCCcccccccceeeccccceE---EEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 297 ESPNQRANSLLNSYSDYEDSV---YGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+....++..+...- .+..|+||++ ++.+|+.||+|.+|++++.
T Consensus 219 -------G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 219 -------GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred -------CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCC
Confidence 88888887665432 5788999999 8999999999999999753
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.9e-29 Score=192.52 Aligned_cols=268 Identities=15% Similarity=0.203 Sum_probs=211.6
Q ss_pred ceEEEeeeeeCCCCEEEEEEeCCCCC------eEE---EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018700 29 TSFLTGTLSLKEENEVHLLRLSSGGT------ELI---CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP 99 (351)
Q Consensus 29 ~~~~~g~~~~~~~~~i~~~~~~~~~~------~~~---~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~ 99 (351)
.++++|++ +..|..+.+.+... ... .-.+..|.+.|++++.+ ++++++ |+.|-+|+|||+.
T Consensus 2 m~iIvGtY----E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aS----GssDetI~IYDm~ 71 (362)
T KOG0294|consen 2 MEIIVGTY----EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVAS----GSSDETIHIYDMR 71 (362)
T ss_pred eeEEEeee----eeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEec----cCCCCcEEEEecc
Confidence 36788875 56677777776541 111 12345788999999986 677777 5899999999998
Q ss_pred cccCCCCCCcceeeeeeeccccceeEEEecCCCC--CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018700 100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR--HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (351)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (351)
....+..+-.|.+.|+++.|.++-. + +++++.||.|.+|+...- .......+|...|+.++.+
T Consensus 72 ---------k~~qlg~ll~HagsitaL~F~~~~S~sh-LlS~sdDG~i~iw~~~~W-----~~~~slK~H~~~Vt~lsiH 136 (362)
T KOG0294|consen 72 ---------KRKQLGILLSHAGSITALKFYPPLSKSH-LLSGSDDGHIIIWRVGSW-----ELLKSLKAHKGQVTDLSIH 136 (362)
T ss_pred ---------chhhhcceeccccceEEEEecCCcchhh-eeeecCCCcEEEEEcCCe-----EEeeeecccccccceeEec
Confidence 5667777889999999999998763 4 888899999999999842 2233445677789999999
Q ss_pred CCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee
Q 018700 178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW 256 (351)
Q Consensus 178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 256 (351)
|.++.-++.+.|+.+++|++-.++.-......+ ...+.|+|.|. .++.+..+ .|-+|.+.. ......+. ....+.
T Consensus 137 PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~-A~v~~~i~-~~~r~l 212 (362)
T KOG0294|consen 137 PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD-HFVVSGRN-KIDIYQLDN-ASVFREIE-NPKRIL 212 (362)
T ss_pred CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC-EEEEEecc-EEEEEeccc-HhHhhhhh-ccccce
Confidence 999999999999999999999998877777666 77799999999 45555554 688999886 43444443 234567
Q ss_pred EEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe--CCCCCceEEEee
Q 018700 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW--SSREPWIFASLS 334 (351)
Q Consensus 257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~ 334 (351)
++.|... .+|++|+.|+.|++||... ..+...+.+|...|-++.+ .|.+. +|++++
T Consensus 213 ~~~~l~~--~~L~vG~d~~~i~~~D~ds-------------------~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaS 270 (362)
T KOG0294|consen 213 CATFLDG--SELLVGGDNEWISLKDTDS-------------------DTPLTEFLAHENRVKDIASYTNPEHE-YLVTAS 270 (362)
T ss_pred eeeecCC--ceEEEecCCceEEEeccCC-------------------CccceeeecchhheeeeEEEecCCce-EEEEec
Confidence 7777653 6899999999999999998 8889999999999999984 45555 999999
Q ss_pred eCCeEEEeecCcc
Q 018700 335 YDGRVVVESVKPF 347 (351)
Q Consensus 335 ~dg~v~vw~~~~~ 347 (351)
.||.|+|||++..
T Consensus 271 SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 271 SDGFIKVWDIDME 283 (362)
T ss_pred cCceEEEEEcccc
Confidence 9999999999754
No 78
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.97 E-value=9.7e-29 Score=190.33 Aligned_cols=308 Identities=16% Similarity=0.243 Sum_probs=233.0
Q ss_pred eeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCC----ceEEE
Q 018700 8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ----RIFST 83 (351)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~----~l~~~ 83 (351)
+.|.-.++.-.+.|........|+++|++.....|+|.++.+.+++..+....-+.|+-+++.+.|.|+.. .|+++
T Consensus 39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT 118 (364)
T KOG0290|consen 39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT 118 (364)
T ss_pred EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence 34445556666777666566799999999888899999999999998888887789999999999999763 56664
Q ss_pred EeecCCcceEEEEEcccccCCCCCCcceeeee-----eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc
Q 018700 84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAA-----LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ 158 (351)
Q Consensus 84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~ 158 (351)
.+..+|+|.+..+.. ...+... -..+.+++++..|+.-..+++.+++-|.+..|||++++. ..
T Consensus 119 -----s~D~LRlWri~~ee~-----~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--~~ 186 (364)
T KOG0290|consen 119 -----SSDFLRLWRIGDEES-----RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--SG 186 (364)
T ss_pred -----ccCeEEEEeccCcCC-----ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc--cc
Confidence 344899999874311 1122111 234678999999999888767777999999999999751 11
Q ss_pred cccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecc---e--eEEEEcCCCCCcEEEEecC-CC
Q 018700 159 VQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA---H--VRNVDYDTKKKHLLVTAAD-ES 231 (351)
Q Consensus 159 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~-dg 231 (351)
........|..+|.+++|...+.. +++.+.||.+++||++..+....+... + ...++|+++..+++++-.. ..
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 222334467779999999986654 566789999999999987655444322 2 8899999999888877554 45
Q ss_pred eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018700 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS 311 (351)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
.|.|.|+|.+..++.++.+|...|+.++|.|.....|+|++.|..+.+||+.....+. ...++..+.
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-------------~~dPilay~ 333 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-------------GEDPILAYT 333 (364)
T ss_pred eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-------------CCCchhhhh
Confidence 8999999999999999999999999999999998999999999999999998732211 123444454
Q ss_pred cccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018700 312 DYEDSVYGLAWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 312 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 342 (351)
....|+.+.|++..+.-++.+. ++.+.+-
T Consensus 334 -a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 334 -AGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred -ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 4567999999976654455544 5555554
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.5e-29 Score=201.86 Aligned_cols=280 Identities=18% Similarity=0.262 Sum_probs=221.6
Q ss_pred eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018700 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (351)
+.++...+.....+.| +.+....+++...+ + ....+.||...|+.+.|+|+...++++ +.|..|+||..
T Consensus 222 i~ald~~~s~~~ilTG----G~d~~av~~d~~s~--q-~l~~~~Gh~kki~~v~~~~~~~~v~~a----Sad~~i~vws~ 290 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTG----GEDKTAVLFDKPSN--Q-ILATLKGHTKKITSVKFHKDLDTVITA----SADEIIRVWSV 290 (506)
T ss_pred eeEEeecCCCCcceec----CCCCceEEEecchh--h-hhhhccCcceEEEEEEeccchhheeec----CCcceEEeecc
Confidence 3344444443444443 34545555555543 2 347788999999999999998888775 78999999998
Q ss_pred ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC
Q 018700 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP 178 (351)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (351)
. ..........|.++|+.+..+|.|.+ +++++.|++..+.|+.++.......... ..-.+++.+|+|
T Consensus 291 ~---------~~s~~~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHp 357 (506)
T KOG0289|consen 291 P---------LSSEPTSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHP 357 (506)
T ss_pred c---------cccCccccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcC
Confidence 7 33455667799999999999999997 7788999999999999865554443321 112689999999
Q ss_pred CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-CCCc
Q 018700 179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHW 254 (351)
Q Consensus 179 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~ 254 (351)
||..+.+|..|+.|+|||+.++..+..|. +| |..++|+.+| |+++++++|+.|++||+|+.. .++++.. ....
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~-n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK-NFKTIQLDEKKE 434 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc-ccceeecccccc
Confidence 99999999999999999999998888887 56 9999999998 589999999999999999844 5666653 2347
Q ss_pred eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018700 255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 334 (351)
+.++.|.+.| .+|+.++.|=.|++++-.+ ..+.++..+..|.+..+++.|....+ ++++++
T Consensus 435 v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~-----------------k~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~s 495 (506)
T KOG0289|consen 435 VNSLSFDQSG-TYLGIAGSDLQVYICKKKT-----------------KSWTEIKELADHSGLSTGVRFGEHAQ-YLASTS 495 (506)
T ss_pred ceeEEEcCCC-CeEEeecceeEEEEEeccc-----------------ccceeeehhhhcccccceeeecccce-EEeecc
Confidence 9999999999 9999998886666666443 12788888888998899999999888 899999
Q ss_pred eCCeEEEeec
Q 018700 335 YDGRVVVESV 344 (351)
Q Consensus 335 ~dg~v~vw~~ 344 (351)
.|..++++.+
T Consensus 496 md~~l~~~a~ 505 (506)
T KOG0289|consen 496 MDAILRLYAL 505 (506)
T ss_pred chhheEEeec
Confidence 9999999865
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=205.78 Aligned_cols=242 Identities=21% Similarity=0.286 Sum_probs=197.5
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~ 143 (351)
-.+.|.+++|+|..++=++++ ..-.+.||+.. ......++......|.++.|-.||+ +++++...|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt----~S~rvqly~~~---------~~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG 90 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVT----SSVRVQLYSSV---------TRSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESG 90 (487)
T ss_pred ccCcceeEecCCCCCCceEEe----cccEEEEEecc---------hhhhhhhHHhhccceeEEEeecCCe-EEEccCCcC
Confidence 347899999999888655553 34579999987 5666777777889999999999999 355556789
Q ss_pred cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecce---eEEEEcCCC
Q 018700 144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK 219 (351)
Q Consensus 144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~ 219 (351)
.|+|||+.+ ........+|+.++..+.|+|+++.++ +|+.|+.+++||+.+......+. +| |.|.+|+|.
T Consensus 91 ~V~vfD~k~-----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 91 HVKVFDMKS-----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPA 164 (487)
T ss_pred cEEEecccc-----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccC
Confidence 999999653 223334457788999999999877655 56678899999999887533444 55 999999999
Q ss_pred CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018700 220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299 (351)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 299 (351)
.+.++++|+.||.|++||+|.....+.++. |..+|..+.+-|.| ..+++++. ..|++||+..+
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G-------------- 227 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTG-------------- 227 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCC--------------
Confidence 988999999999999999998655666665 99999999999999 88998885 47999999962
Q ss_pred cccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
++.+.....|...|+|+.+..++. .|++++-|+.|++|++.++
T Consensus 228 ----~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 228 ----GQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred ----ceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccce
Confidence 566666666999999999999987 7999999999999997665
No 81
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6e-29 Score=196.96 Aligned_cols=244 Identities=16% Similarity=0.295 Sum_probs=191.2
Q ss_pred EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018700 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 137 (351)
...+..|...|.+++.+|+. .++++ ||.|....||++. ++.....+.+|++.|+++.|+.+|.+ ++
T Consensus 57 ~~tF~~H~~svFavsl~P~~-~l~aT---GGgDD~AflW~~~---------~ge~~~eltgHKDSVt~~~Fshdgtl-LA 122 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN-NLVAT---GGGDDLAFLWDIS---------TGEFAGELTGHKDSVTCCSFSHDGTL-LA 122 (399)
T ss_pred eeehhhcCCceEEEEeCCCC-ceEEe---cCCCceEEEEEcc---------CCcceeEecCCCCceEEEEEccCceE-EE
Confidence 35678899999999999944 55555 6889999999998 66788899999999999999999993 55
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
++..+|.|+||+..++.....+... ...+.=+.|+|.+..|++|+.||.+.+|.+.++...+.+. +| +++=
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G 196 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCG 196 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecc-----cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccc
Confidence 5577999999999987665555411 2256778899999999999999999999999875555555 56 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC-------------------------------------------
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------------------------------------------- 251 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------------------- 251 (351)
.|.|+|+ .++++..||+|++|++.+ ++++..+...
T Consensus 197 ~f~pdGK-r~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 197 EFIPDGK-RILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred cccCCCc-eEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence 9999999 799999999999999987 5565555411
Q ss_pred --------CCceeEEEec---CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018700 252 --------THWTWAVCCN---PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (351)
Q Consensus 252 --------~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (351)
...+.++.+. ..- .+.|+|+.||+|.|||+.. ..+... -.|..+|..+
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~-------------------~~~R~~-c~he~~V~~l 333 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAA-------------------STLRHI-CEHEDGVTKL 333 (399)
T ss_pred Cccccccchhhhhhhhhccccccc-chhhcccccceEEEEeccc-------------------chhhee-ccCCCceEEE
Confidence 1111122222 222 4677888888888888886 444444 4688889999
Q ss_pred EeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 321 AWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 321 ~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.|-+ .. +|++++.+|.|+.||.++
T Consensus 334 ~w~~-t~-~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 334 KWLN-TD-YLLTACANGKVRQWDART 357 (399)
T ss_pred EEcC-cc-hheeeccCceEEeeeccc
Confidence 9999 45 788999999999999875
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.9e-29 Score=204.17 Aligned_cols=280 Identities=18% Similarity=0.296 Sum_probs=209.9
Q ss_pred eCCCCCeEEEEeeecCC--cceeeeeeCCC--CC--------ceEEEEee-cCCcceEEEEEccc--ccCCC--------
Q 018700 49 LSSGGTELICEGLFSHP--NEIWDLSSCPF--DQ--------RIFSTVFS-TGESYGAAIWQIPE--LYGQL-------- 105 (351)
Q Consensus 49 ~~~~~~~~~~~~~~~h~--~~v~~i~~~~~--~~--------~l~~~~~~-~~~d~~i~vw~~~~--~~~~~-------- 105 (351)
.|..+.++++..+..|. -+-..+.|-|+ .. +|+.+..+ ++....+.|=++.- .....
T Consensus 22 ~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e 101 (422)
T KOG0264|consen 22 IWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEE 101 (422)
T ss_pred HHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCccccccccccccc
Confidence 45555666666666666 46667889886 22 44544433 34667777766421 11000
Q ss_pred ---------CCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccc-----cccccCcccc
Q 018700 106 ---------NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQ-----SKQSSGMLHY 170 (351)
Q Consensus 106 ---------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~ 170 (351)
..... .+...-.|.+.|+.+.+.|.... ++++ +..+.|+|||..+........ .....+|...
T Consensus 102 ~~e~~g~~~~~~~v-~i~~~i~h~gEVnRaRymPQnp~-iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e 179 (422)
T KOG0264|consen 102 RGEFGGFGAVSGKV-EISQKINHDGEVNRARYMPQNPN-IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE 179 (422)
T ss_pred ccccCCccccccce-EEEEeccCCccchhhhhCCCCCc-EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc
Confidence 00011 12223469999999999999996 5555 778999999998643322211 1124467777
Q ss_pred eeeeEECCCCC-cEEEeecCCeEEEEEcccCCc------Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018700 171 LSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 171 v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (351)
-++++|++... .|++++.|+.|++||+..... ......+| |..++|++....+|++.+.|+.+.|||+|+
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 88899998654 578889999999999986543 12223355 999999999988999999999999999995
Q ss_pred -CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018700 241 -LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (351)
Q Consensus 241 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (351)
..++.+...+|...|++++|+|.+..+||||+.|++|++||+|. ...++.++.+|...|..
T Consensus 260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn------------------L~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN------------------LNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh------------------cccCceeccCCCcceEE
Confidence 35677788899999999999999989999999999999999998 25688999999999999
Q ss_pred EEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 320 LAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 320 ~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
|.|+|....+||+++.|+.+.|||+...-
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccc
Confidence 99999988899999999999999997643
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.6e-29 Score=199.44 Aligned_cols=249 Identities=18% Similarity=0.273 Sum_probs=201.1
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
+.+..|.++|+-+.||++|++|+++ +.|.+..+|.+.. ....+..+++.+|..+|..+.|+||.++ +++
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsa----SkD~Taiiw~v~~------d~~~kl~~tlvgh~~~V~yi~wSPDdry-Lla 286 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASA----SKDSTAIIWIVVY------DVHFKLKKTLVGHSQPVSYIMWSPDDRY-LLA 286 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeec----cCCceEEEEEEec------CcceeeeeeeecccCceEEEEECCCCCe-EEe
Confidence 4567899999999999999999996 7999999999873 1235778899999999999999999997 777
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---eeEEEE
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---HVRNVD 215 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~v~~~~ 215 (351)
++.|..+.+||+.++........ ++...+.+++|.||+..+++|+.|+.+..||+... .....+.. .|.+++
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~----~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPS----GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLA 361 (519)
T ss_pred cCchHheeeccCCcchhhhhccc----CcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEE
Confidence 77788899999998765444333 23458999999999999999999999999999843 33333322 299999
Q ss_pred cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018700 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295 (351)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 295 (351)
..+||+ .+++.+.|..|++|+... ..... +.....+|++.+.+.++ +++++.-.+..+++||++.
T Consensus 362 it~Dgk-~vl~v~~d~~i~l~~~e~-~~dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e----------- 426 (519)
T KOG0293|consen 362 ITYDGK-YVLLVTVDKKIRLYNREA-RVDRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEE----------- 426 (519)
T ss_pred EcCCCc-EEEEEecccceeeechhh-hhhhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecch-----------
Confidence 999999 566677999999999875 32222 33456899999999999 9999999999999999998
Q ss_pred ccCCcccccccceeeccccce--EEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 296 VESPNQRANSLLNSYSDYEDS--VYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
...+..+.+|... +-.-+|--....++++|++|+.|+||+-..
T Consensus 427 --------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 427 --------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred --------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 8889999998653 333446544434899999999999999764
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=215.59 Aligned_cols=257 Identities=20% Similarity=0.315 Sum_probs=211.9
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 119 (351)
.+..|.+|+.-. .......+.+|.+.|+++++..-+..|++ |+.|.++++||+. ++++...+.+|
T Consensus 226 ~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~~lvs----gS~D~t~rvWd~~---------sg~C~~~l~gh 290 (537)
T KOG0274|consen 226 DDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGDKLVS----GSTDKTERVWDCS---------TGECTHSLQGH 290 (537)
T ss_pred CCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCCEEEE----EecCCcEEeEecC---------CCcEEEEecCC
Confidence 345555555443 44454559999999999999875556666 4789999999988 88999999999
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 199 (351)
.+.|.++...+. .++.++.|.+|++|++.++...... . +|..+|.++..+ +..+++|+.|++|++||+.+
T Consensus 291 ~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~-~----~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 291 TSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLL-R----GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEe-c----cccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 999999987654 2455589999999999964433222 2 377799999997 78999999999999999999
Q ss_pred CCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018700 200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (351)
Q Consensus 200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 276 (351)
++++..+. +| |.++.+.+. . .+++|+.|++|++||+++..+++.++.+|..-+..+.+. + .+|++++.|++
T Consensus 361 ~~cl~sl~-gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 361 GKCLKSLS-GHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--D-NFLVSSSADGT 434 (537)
T ss_pred ceeeeeec-CCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--c-ceeEecccccc
Confidence 99999998 57 999988775 4 799999999999999998427999999999999777654 3 89999999999
Q ss_pred EEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018700 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS 349 (351)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 349 (351)
|++||... +++++++.+ |...|..+++. .. .+++++.||.+++||++....
T Consensus 435 Ik~WD~~~-------------------~~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 435 IKLWDAEE-------------------GECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEEeeccc-------------------CceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCch
Confidence 99999998 899999988 66788888887 23 688999999999999987543
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.1e-27 Score=175.40 Aligned_cols=262 Identities=15% Similarity=0.217 Sum_probs=197.8
Q ss_pred CeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC------CCCCCcceeeeeeeccccceeEEE
Q 018700 54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG------QLNSPQLERIAALDAHVGKINCVL 127 (351)
Q Consensus 54 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~~~ 127 (351)
+.+....+..-...|.+++|+|.|...++ |+...+++|........ ....+.....+.-+.|.+.|.|.+
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g~lyav----gsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAGGLYAV----GSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred cceEEEEEecchhheeeEEecCCCceEEe----ccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 34455555666789999999999977766 47888888887653311 111222233344467899999999
Q ss_pred ecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC----CCcEEEee-cCCeEEEEEcccCCc
Q 018700 128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAAT-CESSVQFWDLRSMGK 202 (351)
Q Consensus 128 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~iwd~~~~~~ 202 (351)
|+|+|. ++++++.|.+|++...+.......-...+..-|...|..++|..+ +..|++++ .|..|++-|...++.
T Consensus 97 ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence 999999 355558999999988775433322222334456679999999543 34455544 688899989988888
Q ss_pred Cceeecce---eEEE-EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--C-----CCceeEEEecCCCCCeEEEe
Q 018700 203 TNSIEHAH---VRNV-DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--H-----THWTWAVCCNPEYDGFILSA 271 (351)
Q Consensus 203 ~~~~~~~~---v~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~l~s~ 271 (351)
...+. +| |.++ .| ++- ++++|+.|.+|++||+|- ..++.++.. | .+.|..++..|.| ++|++|
T Consensus 176 ~~a~s-ghtghilalysw--n~~-m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg 249 (350)
T KOG0641|consen 176 FHALS-GHTGHILALYSW--NGA-MFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASG 249 (350)
T ss_pred ceeec-CCcccEEEEEEe--cCc-EEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCc-ceeeec
Confidence 87776 55 4443 44 344 899999999999999997 446666542 2 2568999999999 999999
Q ss_pred eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
-.|.+..+||++- +..++.+..|+..|+++.|+|... ++.+++.|..|++=|++.
T Consensus 250 ~~dssc~lydirg-------------------~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 250 HADSSCMLYDIRG-------------------GRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred cCCCceEEEEeeC-------------------CceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeeccc
Confidence 9999999999998 899999999999999999999765 899999999999998864
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.1e-28 Score=186.15 Aligned_cols=280 Identities=17% Similarity=0.234 Sum_probs=214.0
Q ss_pred eecccc-ceeEeeeecCCCCcceEE-EeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018700 9 GYGLKY-QARCISDVKADTDHTSFL-TGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS 86 (351)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~ 86 (351)
.|.+.- +...|..++++|...-++ .|+ -++.+++|.+... +.+..+....|+++|.+++|+.+|..++++
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~S----WD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g--- 90 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGS----WDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSG--- 90 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecc----cCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEee---
Confidence 344333 456788899999554444 554 4899999999987 444557778899999999999999888874
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc-EEEEecCCcEEEEEcCCCCCCccccccccc
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD-KLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 165 (351)
+.|+.+++||+. +. .+..+..|.++|.++.|-+...+- +++++.|.+|+.||.+.......+...+
T Consensus 91 -~~Dk~~k~wDL~---------S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-- 157 (347)
T KOG0647|consen 91 -GCDKQAKLWDLA---------SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-- 157 (347)
T ss_pred -ccCCceEEEEcc---------CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--
Confidence 799999999998 44 456777999999999998876533 5556999999999999655554444333
Q ss_pred CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce-eec--ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018700 166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-IEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (351)
.++++..- ...++++..+..|.+|+++++..... +.. .. ++|++..++.. ..+.|+-+|.+.+..+..+
T Consensus 158 ----RvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 158 ----RVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred ----eeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCC
Confidence 67776543 45688888999999999987643322 221 12 99999999888 5688999999999988763
Q ss_pred C-cceeEeeCCC---------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018700 242 K-APIQELPGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS 311 (351)
Q Consensus 242 ~-~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
. +.-..|+.|. ..|++|+|+|.. ..|+|++.||++.+||-.. ...+.+.+
T Consensus 231 ~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkda-------------------r~kLk~s~ 290 (347)
T KOG0647|consen 231 NPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA-------------------RTKLKTSE 290 (347)
T ss_pred CccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchh-------------------hhhhhccC
Confidence 2 2233455555 257899999988 8999999999999999988 77788888
Q ss_pred cccceEEEEEeCCCCCceEEEeeeC
Q 018700 312 DYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 312 ~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
.|..+|++.+|+.+|..+..+.++|
T Consensus 291 ~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 291 THPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cCCCccceeEecCCCCEEEEEeecc
Confidence 9999999999999999433344444
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-28 Score=184.29 Aligned_cols=253 Identities=21% Similarity=0.324 Sum_probs=196.1
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecC--CCCCcEEEE
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS--SGRHDKLVS 139 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~ 139 (351)
..|++.|+++...-.|++|+++ +.|++|+|+.... +...+++.+|.+|.++|+.++|.. .|. +++++
T Consensus 8 t~H~D~IHda~lDyygkrlATc----sSD~tVkIf~v~~------n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLASc 76 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATC----SSDGTVKIFEVRN------NGQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASC 76 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeee----cCCccEEEEEEcC------CCCceeeeEecCCCCCeeEEeecccccCc-EeeEe
Confidence 4699999999988889999886 7999999999983 223478899999999999999965 455 34445
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccC--CcCceeecce---eE
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSM--GKTNSIEHAH---VR 212 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~---v~ 212 (351)
+.||.|.||.-..+. - ........|...|++++|.|. |-.|++++.||.|.+.+.++. -....+...| ++
T Consensus 77 sYDgkVIiWke~~g~-w--~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGR-W--TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN 153 (299)
T ss_pred ecCceEEEEecCCCc-h--hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence 899999999988652 2 222334567889999999986 456788899999999988764 2334444456 99
Q ss_pred EEEcCCC---C----------CcEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCC---CCeEEEeeCCC
Q 018700 213 NVDYDTK---K----------KHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEY---DGFILSAGTDS 275 (351)
Q Consensus 213 ~~~~~~~---~----------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg 275 (351)
+++|.|. | .+.|++|+-|..|+||+..... ...+++.+|...|..++|.|.- ..+|++++.||
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 9999986 3 1359999999999999988632 2344588999999999999964 46899999999
Q ss_pred eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
++.||-.+....+ + +.+++.. ....++.+.||+.|. +|+.++.|+.|.+|.-+
T Consensus 234 ~viIwt~~~e~e~----------w---k~tll~~---f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 234 TVIIWTKDEEYEP----------W---KKTLLEE---FPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEEecCccCc----------c---ccccccc---CCcceEEEEEecccc-EEEEecCCcEEEEEEeC
Confidence 9999988741110 0 0233333 456799999999999 89999999999999754
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.3e-28 Score=196.23 Aligned_cols=236 Identities=18% Similarity=0.285 Sum_probs=197.3
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v 145 (351)
..+.++...|....+++ ||.|..+.++|.+ ..+.+..+++|...|+.+.++|+... ++.++.|..|
T Consensus 220 pgi~ald~~~s~~~ilT----GG~d~~av~~d~~---------s~q~l~~~~Gh~kki~~v~~~~~~~~-v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILT----GGEDKTAVLFDKP---------SNQILATLKGHTKKITSVKFHKDLDT-VITASADEII 285 (506)
T ss_pred CCeeEEeecCCCCccee----cCCCCceEEEecc---------hhhhhhhccCcceEEEEEEeccchhh-eeecCCcceE
Confidence 46777878887555655 6899999999988 67889999999999999999999883 5666889999
Q ss_pred EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-e---eEEEEcCCCCC
Q 018700 146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVDYDTKKK 221 (351)
Q Consensus 146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~---v~~~~~~~~~~ 221 (351)
+||........... ..|..+|+.+..+|.|.||++++.|++..+.|++++..+...... . +++.+|+|||-
T Consensus 286 ~vws~~~~s~~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL 360 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL 360 (506)
T ss_pred EeeccccccCcccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce
Confidence 99998754322222 245669999999999999999999999999999999887766642 2 99999999997
Q ss_pred cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018700 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ 301 (351)
Q Consensus 222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (351)
+|.+|..|+.++|||+.. ...+..|.+|+++|..++|+.+| .+|+++..|+.|++||++.
T Consensus 361 -ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK----------------- 420 (506)
T KOG0289|consen 361 -IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK----------------- 420 (506)
T ss_pred -EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh-----------------
Confidence 999999999999999998 55789999999999999999999 9999999999999999998
Q ss_pred cccccceeeccc-cceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 302 RANSLLNSYSDY-EDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 302 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
.+...++.-. ..+|.++.|.+.|. +|+.++.|=.|++++
T Consensus 421 --l~n~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 421 --LKNFKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICK 460 (506)
T ss_pred --hcccceeeccccccceeEEEcCCCC-eEEeecceeEEEEEe
Confidence 5555555432 23699999999999 788887665555554
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.8e-29 Score=209.28 Aligned_cols=250 Identities=18% Similarity=0.289 Sum_probs=204.4
Q ss_pred CCccee---eeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 64 HPNEIW---DLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 64 h~~~v~---~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
|...|. .+..++ .+++|++ ||.||.|++|+.....+.. ....+..++.|.+.|..+....+++. ++++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfT----gGRDg~i~~W~~~~d~~~~---s~~~~asme~HsDWVNDiiL~~~~~t-lIS~ 91 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFT----GGRDGIIRLWSVTQDSNEP---STPYIASMEHHSDWVNDIILCGNGKT-LISA 91 (735)
T ss_pred ccccccchhhccccCCCCceEEe----cCCCceEEEeccccccCCc---ccchhhhhhhhHhHHhhHHhhcCCCc-eEEe
Confidence 444444 444544 4555777 5899999999998543322 22246788899999999999999974 7888
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE-CCCCCcEEEeecCCeEEEEEcccCCc--Cceee--------c
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGK--TNSIE--------H 208 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--------~ 208 (351)
+.|-+|++|+..... .........|...|.+++. .++...+++|+-|+.|.+||++++.. +..+. .
T Consensus 92 SsDtTVK~W~~~~~~---~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDN---TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred cCCceEEEeecccCc---chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 899999999998654 1122223357789999999 77888888999999999999998732 22221 1
Q ss_pred ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
++ +++++.++.|. ++++|+.++.+++||.++ .+.+..+.+|+..|..+..+++| ..+++++.||+|++||+..
T Consensus 169 G~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgq- 244 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQ- 244 (735)
T ss_pred CCccceeeeecCCcce-EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccc-
Confidence 23 99999999996 899999999999999998 55677888999999999999999 9999999999999999998
Q ss_pred CCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
..++.++..|...|+++..+|+-. .+.+|+.||.|..=|+..+
T Consensus 245 ------------------QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 ------------------QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------------------cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCc
Confidence 899999999999999999999888 8999999999999888764
No 90
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.1e-29 Score=193.53 Aligned_cols=252 Identities=11% Similarity=0.151 Sum_probs=205.4
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
.++...-+.|..|+||+++|++ |+.||.|.+||.....-.+ ....+....+--+.++|.|+.|+.|.. ++++++
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvs----gSvDGFiEVWny~~GKlrK-DLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGs 282 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVS----GSVDGFIEVWNYTTGKLRK-DLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGS 282 (508)
T ss_pred ecccccchhheeeCCCCceEee----ccccceeeeehhccchhhh-hhhhhhhcceeecccceEEEeecccHH-HhhccC
Confidence 4567788899999999999998 5899999999987210000 001112223445788999999999998 355668
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD 217 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~ 217 (351)
.||.|++|.+.++.....+.. .|+..|+++.|+.|+..+++++.|.++++.-+.+|+++..+. +| |+...|.
T Consensus 283 qDGkIKvWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft 357 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFT 357 (508)
T ss_pred cCCcEEEEEEecchHHHHhhh----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEc
Confidence 999999999998776655543 567789999999999999999999999999999999999998 66 9999999
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 295 (351)
++|. .+++++.||+|++|+.++ ..++.+++ +...+|+++..-|.++..++.+...++|.|.++.
T Consensus 358 ~dG~-~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q------------ 423 (508)
T KOG0275|consen 358 DDGH-HIISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ------------ 423 (508)
T ss_pred CCCC-eEEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc------------
Confidence 9998 799999999999999997 77888877 3557899999999998999999999999999987
Q ss_pred ccCCcccccccceeeccc---cceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 296 VESPNQRANSLLNSYSDY---EDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++.++++... .+...+...+|.|. .+.+.+.|+.++.+.+.+
T Consensus 424 --------GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 424 --------GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred --------ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeec
Confidence 5777777532 23345667899999 577888999999998754
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.9e-29 Score=209.82 Aligned_cols=275 Identities=16% Similarity=0.257 Sum_probs=219.9
Q ss_pred eCCCCEEEEEEeCCCCCe---EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee
Q 018700 38 LKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA 114 (351)
Q Consensus 38 ~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 114 (351)
.+.++.|+.|.+..+.+. -....+..|.+.|+++..+.+++.|+++ +.|.+|++|+... ..--+..
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~----SsDtTVK~W~~~~-------~~~~c~s 111 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA----SSDTTVKVWNAHK-------DNTFCMS 111 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe----cCCceEEEeeccc-------CcchhHh
Confidence 467899999999877653 2245677899999999999999999986 7999999999882 1125678
Q ss_pred eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--C---cccccccc-cCcccceeeeEECCCCCcEEEeec
Q 018700 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--N---AQVQSKQS-SGMLHYLSGGAWDPHDVNAVAATC 188 (351)
Q Consensus 115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 188 (351)
+++.|++-|.|+++-.....++++++-|+.|++||++++.. . ........ .++...+++++-++.+..+++|+.
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 89999999999999444443455558899999999997632 1 11111112 277889999999999988999999
Q ss_pred CCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCC
Q 018700 189 ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD 265 (351)
Q Consensus 189 d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (351)
.+.+++||.++++.+..+. +| |.++-.+++|. .++++++||+|++||++. .+++.++..|...|+++..+|+=
T Consensus 192 ek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf- 267 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSF- 267 (735)
T ss_pred ccceEEeccccccceeeee-ccccceEEEEEcCCCC-eEeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCc-
Confidence 9999999999999999998 78 99999999998 799999999999999997 78999999999999999999988
Q ss_pred CeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 266 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.++++|+.||.|..=|+++. .+....+ ....+|..+..+.... -+-+++.|+.|+-|..+
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~------------------~~~tlic-k~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNP------------------AKSTLIC-KEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEecCCCCcEEecccCCc------------------hhheEee-cCCCchhhhhhccccC-CceeeeccccceecCCc
Confidence 99999999999999999871 2222222 2344677777775444 23566778899999876
Q ss_pred cc
Q 018700 346 PF 347 (351)
Q Consensus 346 ~~ 347 (351)
..
T Consensus 328 ~~ 329 (735)
T KOG0308|consen 328 PD 329 (735)
T ss_pred cc
Confidence 54
No 92
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.3e-29 Score=213.54 Aligned_cols=255 Identities=16% Similarity=0.214 Sum_probs=196.4
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc---ccceeEEEecCCCCCcEEEEec
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH---VGKINCVLWWSSGRHDKLVSID 141 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~ 141 (351)
+.....|..+++...++.+ ....++||.+..... ..++...++.. .-.+..|.|......++++++.
T Consensus 39 k~~~nAIs~nr~~~qiv~A-----Grs~lklyai~~~~~-----~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVA-----GRSLLKLYAINPNDF-----SEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred ccccceEeecCCcceeEEe-----cccceeeEeeCcccC-----CcceeeecccccceeeehhhcccccchhhhheeecC
Confidence 3456677788888888876 344788888773210 11222222111 1245678898766666777788
Q ss_pred CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCC
Q 018700 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDT 218 (351)
Q Consensus 142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~ 218 (351)
.|.|.+||+....... ....+..|...+..+.|++.... |++|+.||+|++||++..+...++.... |+.++|+|
T Consensus 109 nG~i~vWdlnk~~rnk--~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNK--LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred CCcEEEEecCccccch--hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 9999999999632222 22234467889999999987654 6678999999999999988887777443 99999999
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES 298 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 298 (351)
...+.|+++.+.|.+++||+|.+.++...+.+|.++|.++.|+|++ .+|||||.|+.|+|||+...
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~------------- 252 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDS------------- 252 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCC-------------
Confidence 9888999999999999999999999999999999999999999987 99999999999999999861
Q ss_pred CcccccccceeeccccceEEEEEeCCCCCceEEEee--eCCeEEEeecC-ccccc
Q 018700 299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS--YDGRVVVESVK-PFLSR 350 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~-~~~~~ 350 (351)
...+..++. ...+|..+.|-|..++.||+++ .|-.|+|||+. +|+|+
T Consensus 253 ----~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~ 302 (839)
T KOG0269|consen 253 ----RAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY 302 (839)
T ss_pred ----CccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence 123333332 3467999999999998999887 58899999996 67664
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.2e-28 Score=186.14 Aligned_cols=244 Identities=17% Similarity=0.230 Sum_probs=187.9
Q ss_pred cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC
Q 018700 63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE 142 (351)
Q Consensus 63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d 142 (351)
.-++.|.+|+|||....++++ ++-|++||+|+++.. +...+ +....|.++|.+++|+.+|.. +++++.|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A---~SWD~tVR~wevq~~------g~~~~-ka~~~~~~PvL~v~Wsddgsk-Vf~g~~D 93 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAA---GSWDGTVRIWEVQNS------GQLVP-KAQQSHDGPVLDVCWSDDGSK-VFSGGCD 93 (347)
T ss_pred CcccchheeEeccccCceEEe---cccCCceEEEEEecC------Ccccc-hhhhccCCCeEEEEEccCCce-EEeeccC
Confidence 346799999999977777766 699999999999831 11222 445679999999999999984 6777889
Q ss_pred CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC--cEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCC
Q 018700 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTK 219 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~ 219 (351)
+.+++||+.+++ ...+- .|..+|..+.|-+... .|++|+.|.+|++||++...++.++..+. +.++..-
T Consensus 94 k~~k~wDL~S~Q-~~~v~-----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~-- 165 (347)
T KOG0647|consen 94 KQAKLWDLASGQ-VSQVA-----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL-- 165 (347)
T ss_pred CceEEEEccCCC-eeeee-----ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--
Confidence 999999999763 32222 3566999999977655 68999999999999999999999888766 7777664
Q ss_pred CCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018700 220 KKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES 298 (351)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 298 (351)
.+ +++++..+..|.+|+++.+....+..+ .-.-.+.+|+..++. ...+.|+-+|.+.+..+....
T Consensus 166 ~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~------------ 231 (347)
T KOG0647|consen 166 YP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPN------------ 231 (347)
T ss_pred Cc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCC------------
Confidence 33 788899999999999986433222222 123457899998888 666999999999999888621
Q ss_pred Ccccccccceeecccc---------ceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 299 PNQRANSLLNSYSDYE---------DSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
...-.+|+.|. -.|++|+|+|... .|+++|.||++.+||-+
T Consensus 232 -----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 232 -----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKD 281 (347)
T ss_pred -----ccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecch
Confidence 13334555554 2588999999877 89999999999999964
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-26 Score=178.61 Aligned_cols=279 Identities=16% Similarity=0.207 Sum_probs=218.8
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
...+.++.++.++..++.++ +++.+++++..... ..+.+..++-.|..++|-.....++.+. ...|.+|+.
T Consensus 14 ~~~i~sl~fs~~G~~litss----~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sS--tk~d~tIry 84 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS----EDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSS--TKEDDTIRY 84 (311)
T ss_pred CCceeEEEecCCCCEEEEec----CCCeEEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEcc--CCCCCceEE
Confidence 44577888999998888754 67889988877643 3355666777899999976666665542 345889999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
-++. ..+.++-+.+|...|.+++.+|-+. .+++++.|++|++||++..+....+.. . .-...+
T Consensus 85 Lsl~---------dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~------~~pi~A 147 (311)
T KOG1446|consen 85 LSLH---------DNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-S------GRPIAA 147 (311)
T ss_pred EEee---------cCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-C------CCccee
Confidence 9998 6789999999999999999999887 488889999999999996443333222 1 344568
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccC--CcCceeecc---e--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHA---H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 248 (351)
|.|+|-.++++...+.|++||++.- .+..++... + .+.+.|+|+|+ .++.+...+.+++.|.-. +....++
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~-G~~~~tf 225 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFD-GTVKSTF 225 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccC-CcEeeeE
Confidence 9999998888887779999999964 344444433 2 99999999999 566678889999999876 6677777
Q ss_pred eCCCCce---eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCC
Q 018700 249 PGHTHWT---WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSS 324 (351)
Q Consensus 249 ~~~~~~v---~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 324 (351)
..+...- ....|.|++ .++++|+.||+|.+|++++ +..+..+.+ +..++.++.|+|
T Consensus 226 s~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~t-------------------g~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLET-------------------GKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred eeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCC-------------------CcEeeEecCCCCCCccccccCC
Confidence 7665432 577899999 9999999999999999998 888888887 688899999999
Q ss_pred CCCceEEEeeeCCeEEEeecC
Q 018700 325 REPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.-. ++++++ ..+.+|=..
T Consensus 286 ~~~-mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 286 RYA-MFVSAS--SNLVFWLPD 303 (311)
T ss_pred cee-eeeecC--ceEEEEecc
Confidence 765 566654 577788654
No 95
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.3e-29 Score=223.05 Aligned_cols=276 Identities=18% Similarity=0.337 Sum_probs=220.2
Q ss_pred EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCc---eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018700 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (351)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 119 (351)
.|.-+++......+.......-...-+.++|.+.+.. |+++ |.+||.|.+||.... ........+.++..|
T Consensus 42 Eifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG---G~edG~I~ly~p~~~---~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 42 EIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG---GLEDGNIVLYDPASI---IANASEEVLATKSKH 115 (1049)
T ss_pred ceeeecccCccccccccccccccccceeeeecccCCCccceeec---cccCCceEEecchhh---ccCcchHHHhhhccc
Confidence 3444444444433333333344567889999998877 5665 689999999998742 112345667788899
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcc
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLR 198 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~ 198 (351)
++.|..+.|++....++++++.||.|.|||+++.+.....- .....+.|.+++|+..-.. |++++.+|.+.|||++
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 99999999999998756666889999999999754443332 2223458999999987655 5566788899999999
Q ss_pred cCCcCceeecce----eEEEEcCCCCCcEEEEecCCC---eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018700 199 SMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (351)
Q Consensus 199 ~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 271 (351)
..+.+..+.... +..++|+|++...++++++|. .|.+||+|....+++++++|...|.++.|++.++++|+++
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 987776665222 889999999886777777653 7999999998889999999999999999999988999999
Q ss_pred eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+.|+.|.+|+.++ ++.+..+....+++..+.|+|..+.+|+.++.||.|.||.+..
T Consensus 273 gkD~~ii~wN~~t-------------------gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 273 GKDNRIICWNPNT-------------------GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCCeeEecCCC-------------------ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999999999999 9999999888889999999999888899999999999999864
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=209.93 Aligned_cols=285 Identities=15% Similarity=0.248 Sum_probs=209.7
Q ss_pred eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEee----ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018700 21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGL----FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (351)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw 96 (351)
++...++..++++... ..+.++.+.+.......... ....-.+.++.|......+++++ +..|.|.+|
T Consensus 44 AIs~nr~~~qiv~AGr-----s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~---s~nG~i~vW 115 (839)
T KOG0269|consen 44 AISVNRDINQIVVAGR-----SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATC---STNGVISVW 115 (839)
T ss_pred eEeecCCcceeEEecc-----cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheee---cCCCcEEEE
Confidence 3445566666665432 23344555554332222111 11123556788987666777774 789999999
Q ss_pred EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018700 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (351)
|+... ...+.+..+..|+..+.++.|++...+++++++.||.|++||++.......... ....|.+++|
T Consensus 116 dlnk~------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----nSESiRDV~f 184 (839)
T KOG0269|consen 116 DLNKS------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----NSESIRDVKF 184 (839)
T ss_pred ecCcc------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-----cchhhhceee
Confidence 99821 123556678999999999999999999888889999999999996544433332 3458999999
Q ss_pred CCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-cceeEeeCC
Q 018700 177 DPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGH 251 (351)
Q Consensus 177 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~ 251 (351)
+|.. .+++++...|.+.+||+|..........+| |.|+.|+|++. +||||+.|+.|+|||+.... .++.++. .
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tIn-T 262 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTIN-T 262 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEe-e
Confidence 9964 456677788999999999765433333366 99999999776 89999999999999998522 3444444 4
Q ss_pred CCceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCce
Q 018700 252 THWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329 (351)
Q Consensus 252 ~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 329 (351)
..+|.+|+|-|..+..|++++. |-.|+|||++. .--+..++..|...++.++|.....-.
T Consensus 263 iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR------------------PYIP~~t~~eH~~~vt~i~W~~~d~~~ 324 (839)
T KOG0269|consen 263 IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR------------------PYIPYATFLEHTDSVTGIAWDSGDRIN 324 (839)
T ss_pred cceeeeeeeccCccchhhhhhccccceEEEEeecc------------------ccccceeeeccCccccceeccCCCcee
Confidence 6899999999999788888875 77999999997 256778899999999999998755558
Q ss_pred EEEeeeCCeEEEeec
Q 018700 330 FASLSYDGRVVVESV 344 (351)
Q Consensus 330 l~s~~~dg~v~vw~~ 344 (351)
+.+++.|+.|..-.+
T Consensus 325 l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 325 LWSCSKDGTVLQHLF 339 (839)
T ss_pred eEeecCccHHHHhhh
Confidence 899999998765433
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.6e-28 Score=199.60 Aligned_cols=257 Identities=16% Similarity=0.282 Sum_probs=190.5
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~ 137 (351)
..+.+|...|.++++.|.|.++++ |+.|..|++||+.... ...+..+.+. .....|.+++|++.+.. ++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~s----Gs~Dy~v~~wDf~gMd-----as~~~fr~l~P~E~h~i~sl~ys~Tg~~-iL 230 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVS----GSLDYTVKFWDFQGMD-----ASMRSFRQLQPCETHQINSLQYSVTGDQ-IL 230 (641)
T ss_pred EeccCCceEEEEeeecCCCceeee----ccccceEEEEeccccc-----ccchhhhccCcccccccceeeecCCCCe-EE
Confidence 456788899999999999999988 5899999999997321 1222222332 23457899999999996 44
Q ss_pred EEecCCcEEEEEcCCCCCCccccc--------ccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcC-ceee
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQS--------KQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKT-NSIE 207 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~~ 207 (351)
+.+.....+|+|-.... ...... ....+|...+++.+|+|..+ .+++++.||++++||+...+.. ..+.
T Consensus 231 vvsg~aqakl~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred EEecCcceeEEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 44556789999976422 222111 12468999999999999865 4778899999999999875433 3333
Q ss_pred cc----e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-c-eeEeeCCCC--ceeEEEecCCCCCeEEEeeCCCe
Q 018700 208 HA----H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-P-IQELPGHTH--WTWAVCCNPEYDGFILSAGTDST 276 (351)
Q Consensus 208 ~~----~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~ 276 (351)
.. . +..++|+|+++ +||+|+.||.|.+|+.+.... + ...-..|.. .|++|.|+++| ++|++-+.|++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~t 387 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDT 387 (641)
T ss_pred eccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCc
Confidence 11 1 89999999999 799999999999999865321 2 333457776 89999999999 99999999999
Q ss_pred EEEEEcCCCCCCCCCCcccccCCcccccccceeeccc--cceEEEEEeCCCCCceEEEeee------CCeEEEeecCcc
Q 018700 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSY------DGRVVVESVKPF 347 (351)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~------dg~v~vw~~~~~ 347 (351)
+++||++.. .+++.+..+- .-+-+.++|||+.+ +|++|.. .|.+.+||-.++
T Consensus 388 LKvWDLrq~------------------kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 388 LKVWDLRQF------------------KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred eeeeecccc------------------ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccce
Confidence 999999972 4555555432 22346789999998 8888763 567888886554
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=6.2e-28 Score=198.88 Aligned_cols=263 Identities=16% Similarity=0.189 Sum_probs=217.5
Q ss_pred CCCEEEEEEeCCCCCeEEEEe--eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018700 40 EENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD 117 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (351)
..+.|.+|++...+++.-... .....+-|.++...||++.|++ ||.-.++.|||+.. ++......+.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv----GGeastlsiWDLAa-------pTprikaelt 506 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV----GGEASTLSIWDLAA-------PTPRIKAELT 506 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe----ccccceeeeeeccC-------CCcchhhhcC
Confidence 457889999987655433332 3345688999999999999999 47888999999983 3444444555
Q ss_pred ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018700 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 197 (351)
...-.+.+++.+||.+ +.+++..||.|.|||+.+ +.+...+.+|...+.|+..+++|..|-+|+-|++|+-||+
T Consensus 507 ssapaCyALa~spDak-vcFsccsdGnI~vwDLhn-----q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 507 SSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred CcchhhhhhhcCCccc-eeeeeccCCcEEEEEccc-----ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 5556788899999998 477778899999999985 2333455688899999999999999999999999999999
Q ss_pred ccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018700 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (351)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 276 (351)
+++..+....... |.++.++|.+. ++++|-+++.+.+.....+ ....+..|++-|.++.|++.| +++++.+.|..
T Consensus 581 regrqlqqhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--~kyqlhlheScVLSlKFa~cG-kwfvStGkDnl 656 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNL 656 (705)
T ss_pred hhhhhhhhhhhhhhheecccCCCcc-ceeeecccCcEEEEecCCc--cceeecccccEEEEEEecccC-ceeeecCchhh
Confidence 9988776655444 99999999999 8999999999999888753 345667799999999999999 99999999999
Q ss_pred EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
+..|.+.. +..+...+. ..+|.+++.+.|++ ++++|+.|....||.+
T Consensus 657 LnawrtPy-------------------GasiFqskE-~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 657 LNAWRTPY-------------------GASIFQSKE-SSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhccCcc-------------------ccceeeccc-cCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 99999988 777777655 45699999999998 8999999999999876
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.1e-28 Score=188.37 Aligned_cols=252 Identities=21% Similarity=0.356 Sum_probs=208.3
Q ss_pred EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcE
Q 018700 57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK 136 (351)
Q Consensus 57 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 136 (351)
+.+.+.+|.+.|+.++.....+.+.+ .+.|.+.+||.++ .+.++.++.+|.+.|+++.|++.+. ++
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gt----ASADhTA~iWs~E---------sg~CL~~Y~GH~GSVNsikfh~s~~-L~ 205 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGT----ASADHTARIWSLE---------SGACLATYTGHTGSVNSIKFHNSGL-LL 205 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceee----cccccceeEEeec---------cccceeeecccccceeeEEeccccc-eE
Confidence 34567899999999998765554444 3899999999999 7899999999999999999999988 46
Q ss_pred EEEecCCcEEEEEc------CCCC-----------------------------CCcccccccccCcccceeeeEECCCCC
Q 018700 137 LVSIDEENIFLWSL------DCSN-----------------------------KNAQVQSKQSSGMLHYLSGGAWDPHDV 181 (351)
Q Consensus 137 ~~~~~d~~v~iwd~------~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 181 (351)
++++.|++-.||.. .... ....+......+|...|.+..|...++
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 66688999999972 1100 000111122456777888889999999
Q ss_pred cEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018700 182 NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV 258 (351)
Q Consensus 182 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 258 (351)
.+++++.|.+..+||+++++.+..+. +| .+.++-+|..+ ++++.+.|.+.++||+|..-+.+..|++|...|+++
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV 363 (481)
T ss_pred eeeeeeccccceeeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEE
Confidence 99999999999999999999988887 66 88889999988 899999999999999997667788999999999999
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR 338 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 338 (351)
.|..+. .+++|+.|.+|++||+++ ...++.++.. ..+++.++.+..++ +++.--++..
T Consensus 364 vF~~dd--~vVSgSDDrTvKvWdLrN------------------MRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRq 421 (481)
T KOG0300|consen 364 VFNTDD--RVVSGSDDRTVKVWDLRN------------------MRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQ 421 (481)
T ss_pred EEecCC--ceeecCCCceEEEeeecc------------------ccCcceeeec-CCccceeEeecCCc-eEEeccCCce
Confidence 999875 789999999999999997 2566777754 45689999998877 8888888889
Q ss_pred EEEeecCc
Q 018700 339 VVVESVKP 346 (351)
Q Consensus 339 v~vw~~~~ 346 (351)
|++||++.
T Consensus 422 vRlfDlnG 429 (481)
T KOG0300|consen 422 VRLFDLNG 429 (481)
T ss_pred EEEEecCC
Confidence 99999975
No 100
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1e-26 Score=180.62 Aligned_cols=271 Identities=16% Similarity=0.194 Sum_probs=210.1
Q ss_pred ecccc-ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018700 10 YGLKY-QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG 88 (351)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~ 88 (351)
+.++. +...|+.+.+++....|+++++ ++.++++++.... ......|..++.+++|.++. .+++ |+
T Consensus 6 ~~l~npP~d~IS~v~f~~~~~~LLvssW----DgslrlYdv~~~~----l~~~~~~~~plL~c~F~d~~-~~~~----G~ 72 (323)
T KOG1036|consen 6 FELENPPEDGISSVKFSPSSSDLLVSSW----DGSLRLYDVPANS----LKLKFKHGAPLLDCAFADES-TIVT----GG 72 (323)
T ss_pred cccCCCChhceeeEEEcCcCCcEEEEec----cCcEEEEeccchh----hhhheecCCceeeeeccCCc-eEEE----ec
Confidence 34444 3457888899988899999875 7899999988763 34456799999999999844 4445 58
Q ss_pred CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018700 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (351)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 168 (351)
.||.|+++|+.. .....+..|..+|.|+.+++.... +++++.|++|++||............ .
T Consensus 73 ~dg~vr~~Dln~----------~~~~~igth~~~i~ci~~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~------~ 135 (323)
T KOG1036|consen 73 LDGQVRRYDLNT----------GNEDQIGTHDEGIRCIEYSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQ------G 135 (323)
T ss_pred cCceEEEEEecC----------CcceeeccCCCceEEEEeeccCCe-EEEcccCccEEEEecccccccccccc------C
Confidence 999999999982 334566789999999999986663 88889999999999985222222111 2
Q ss_pred cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCC--
Q 018700 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-- 242 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 242 (351)
..|.++... ++.|++|+.+..+.+||+++.....+..... ++|+++-|++. -+++++-||.|.+=.+....
T Consensus 136 kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 136 KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHH
Confidence 278887765 6789999999999999999876555433222 99999999776 57889999998887665421
Q ss_pred -cceeEeeCCC---------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018700 243 -APIQELPGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD 312 (351)
Q Consensus 243 -~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
..-..|+.|. .+|++|+|+|-. ..|+||+.||.|.+||... .+.+..+..
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~-------------------rKrl~q~~~ 272 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFN-------------------RKRLKQLAK 272 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcc-------------------hhhhhhccC
Confidence 2233455554 479999999998 8999999999999999998 777888877
Q ss_pred ccceEEEEEeCCCCCceEEEee
Q 018700 313 YEDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 313 ~~~~v~~~~~~~~~~~~l~s~~ 334 (351)
....|.+++|+.+|. .||.++
T Consensus 273 ~~~SI~slsfs~dG~-~LAia~ 293 (323)
T KOG1036|consen 273 YETSISSLSFSMDGS-LLAIAS 293 (323)
T ss_pred CCCceEEEEeccCCC-eEEEEe
Confidence 777899999999999 788876
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.7e-27 Score=182.06 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=190.5
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~ 143 (351)
-+..|.++.|+|.+..|+++ +.||++++|++. .......+ .|..++++++|.++.. +++++.||
T Consensus 12 P~d~IS~v~f~~~~~~LLvs----sWDgslrlYdv~---------~~~l~~~~-~~~~plL~c~F~d~~~--~~~G~~dg 75 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVS----SWDGSLRLYDVP---------ANSLKLKF-KHGAPLLDCAFADEST--IVTGGLDG 75 (323)
T ss_pred ChhceeeEEEcCcCCcEEEE----eccCcEEEEecc---------chhhhhhe-ecCCceeeeeccCCce--EEEeccCc
Confidence 35789999999999998886 699999999998 33333344 6899999999999776 78889999
Q ss_pred cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCc
Q 018700 144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH 222 (351)
Q Consensus 144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~ 222 (351)
.|+.+|++++..... ..|...+.++.+.+....+++|+.|++|++||.+.......+..+. |.++....+
T Consensus 76 ~vr~~Dln~~~~~~i------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~--- 146 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQI------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGN--- 146 (323)
T ss_pred eEEEEEecCCcceee------ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCC---
Confidence 999999997543221 2356699999999988999999999999999999877777776555 999888643
Q ss_pred EEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018700 223 LLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ 301 (351)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (351)
.|++|+.+..+.+||+|+...+.+... .....+.++++-|.+ .=++.++-||.|.+=.+... ++
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s--~~------------ 211 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDS--EE------------ 211 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCc--hH------------
Confidence 688899999999999998776654333 345678999999977 66788899999887666541 00
Q ss_pred cccccceeecccc---------ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 302 RANSLLNSYSDYE---------DSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 302 ~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
....-..|+.|. -+|++++|+|-.. .||||+.||.|.+||+.+
T Consensus 212 -~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 212 -AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFN 263 (323)
T ss_pred -HhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcc
Confidence 023344555554 3799999999876 899999999999999865
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=198.35 Aligned_cols=247 Identities=17% Similarity=0.256 Sum_probs=204.0
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+..|.+.|+.+.|-++...|++ ||.|..|++|+... .....+.++.+..++|+++.|.+++.+ +++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlat----gg~Dr~Ik~W~v~~-------~k~~~~~tLaGs~g~it~~d~d~~~~~-~iA 236 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLAT----GGSDRIIKLWNVLG-------EKSELISTLAGSLGNITSIDFDSDNKH-VIA 236 (459)
T ss_pred hhhhccccccceeEEccCcchhhh----cchhhhhhhhhccc-------chhhhhhhhhccCCCcceeeecCCCce-EEe
Confidence 345679999999999998888877 58999999999872 234577788888899999999999996 778
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcC
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD 217 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~ 217 (351)
++.|+.+++|+++..... ....+|+..|+++.|......+++++.|.+|++||+....+..++.... +..|+.+
T Consensus 237 as~d~~~r~Wnvd~~r~~-----~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~ 311 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLR-----HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS 311 (459)
T ss_pred ecCCCceeeeeccchhhh-----hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec
Confidence 889999999999853322 2344688899999998776669999999999999999988888777555 7777776
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 297 (351)
+ . .+++|..|++|++||.|. ..+......+. .|+++..++++ ..+.+++.|.++.+.|++.
T Consensus 312 ~--~-~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt------------- 372 (459)
T KOG0288|consen 312 I--S-DVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRT------------- 372 (459)
T ss_pred c--e-eeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccc-------------
Confidence 2 2 689999999999999998 66778877654 89999999999 8888889999999999998
Q ss_pred CCcccccccceeeccc----cceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 298 SPNQRANSLLNSYSDY----EDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
.+....+... ....+.+.|||++. ++++||.||.|+||++.+-.
T Consensus 373 ------~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 373 ------KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred ------ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCce
Confidence 5555555321 22378899999999 89999999999999997643
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=5.6e-27 Score=200.06 Aligned_cols=253 Identities=17% Similarity=0.269 Sum_probs=207.7
Q ss_pred CCCCEEEEEEeCCCCCeEEEEeeecCCcceee-eeeCCCCC-ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018700 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWD-LSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~-i~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 116 (351)
..++.+.+|.-.. +..+....+.+|.+-|.. +++-+..+ +++. |+.|..|.+|... +..++.++
T Consensus 32 sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~----g~~D~~i~v~~~~---------~~~P~~~L 97 (745)
T KOG0301|consen 32 SRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVV----GGMDTTIIVFKLS---------QAEPLYTL 97 (745)
T ss_pred CCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEe----ecccceEEEEecC---------CCCchhhh
Confidence 3467776665332 233333556778888887 88886444 4555 5899999999998 77899999
Q ss_pred eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018700 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (351)
Q Consensus 117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 196 (351)
.+|+..|.|+....++. +++++.|.++++|....... ...+|...|++++.-|++ .+++|+.|.+|++|.
T Consensus 98 kgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~~-------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELVY-------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK 167 (745)
T ss_pred hccccceeeeecCCcCc--eEecccccceEEecchhhhc-------ccCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence 99999999999888887 88899999999998873211 145788999999999987 799999999999998
Q ss_pred cccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC
Q 018700 197 LRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT 273 (351)
Q Consensus 197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 273 (351)
- ++.+.++. +| |+.+++-+++. |++++.||.|++|++. +..+.++.+|+..|.++...+++ ..++++++
T Consensus 168 ~--~~~l~tf~-gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~-~~Ivs~gE 239 (745)
T KOG0301|consen 168 G--GTLLKTFS-GHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSD-GLIVSTGE 239 (745)
T ss_pred C--Cchhhhhc-cchhheeeeEEecCCC--eEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCC-CeEEEecC
Confidence 5 56777787 67 99999999975 8899999999999994 66899999999999999977777 89999999
Q ss_pred CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
|++++||+.. ++.+.+.-....|+++.+-++|. +++|+.||.||||...+
T Consensus 240 DrtlriW~~~---------------------e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 240 DRTLRIWKKD---------------------ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceEEEeecC---------------------ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecc
Confidence 9999999985 45555554455799999999987 78888899999998764
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=2.4e-27 Score=183.09 Aligned_cols=288 Identities=15% Similarity=0.205 Sum_probs=210.5
Q ss_pred CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC-CCceEEEEeecCCcceEEEEEcccccCCCC-CCcceee-----e
Q 018700 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-DQRIFSTVFSTGESYGAAIWQIPELYGQLN-SPQLERI-----A 114 (351)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~-----~ 114 (351)
..|.-+++.++. .....|.+.|+++...+. ++++++ |+.||.|.|||++....... .-..+.. .
T Consensus 25 rRil~L~Ln~d~-----d~~r~HgGsvNsL~id~tegrymlS----Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~ 95 (397)
T KOG4283|consen 25 RRILSLQLNNDK-----DFVRPHGGSVNSLQIDLTEGRYMLS----GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQ 95 (397)
T ss_pred hhhheeeccCCc-----ceeccCCCccceeeeccccceEEee----cCCCccEEEEEeccccchhhccceeheeeecccc
Confidence 455556666653 233569999999999885 555555 68999999999984321100 0000111 1
Q ss_pred eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC---CcEEEeecCCe
Q 018700 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAATCESS 191 (351)
Q Consensus 115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~ 191 (351)
.-.+|+-.|..+.|-|-...++.+++-|.++++||.++.+....+... ..|++-+++|-. ..+++|..+-.
T Consensus 96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC------ceeehhhcChhhhcceEEEEecCCCc
Confidence 124678899999999988775667789999999999975544333322 278888888853 35667778899
Q ss_pred EEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe--------------eCCCCc
Q 018700 192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--------------PGHTHW 254 (351)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~ 254 (351)
|++.|+.+|.....+. +| |.++.|+|...++|++|+.||.|++||+|....+...+ ..|.+.
T Consensus 170 VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred EEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 9999999999988888 66 99999999999999999999999999999753333333 356678
Q ss_pred eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc--------------------cCC--------ccccccc
Q 018700 255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV--------------------ESP--------NQRANSL 306 (351)
Q Consensus 255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------~~~--------~~~~~~~ 306 (351)
|+.++|..++ .++++.+.|..+++|+...+.....+..... ..| ....+..
T Consensus 249 vngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ 327 (397)
T KOG4283|consen 249 VNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSF 327 (397)
T ss_pred eeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceE
Confidence 9999999999 9999999999999999988644322111000 000 0134566
Q ss_pred ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+..+..|-..|.+.++.|+-+ ...++..|+.+..|-+...
T Consensus 328 ir~l~~h~k~i~c~~~~~~fq-~~~tg~~d~ni~~w~p~l~ 367 (397)
T KOG4283|consen 328 VRRLSTHLKRINCAAYRPDFE-QCFTGDMNGNIYMWSPALK 367 (397)
T ss_pred EEeeecccceeeEEeecCchh-hhhccccCCcccccccccc
Confidence 777778888888888888877 6888999999999987443
No 105
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3e-28 Score=183.84 Aligned_cols=201 Identities=19% Similarity=0.315 Sum_probs=174.1
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
.+.|.--|..++|+.|..+|++ |+.+..+||||+.. ...+...+.+|.+.|..+.|....+. +++++
T Consensus 96 sf~hkhivk~~af~~ds~~llt----gg~ekllrvfdln~--------p~App~E~~ghtg~Ir~v~wc~eD~~-iLSSa 162 (334)
T KOG0278|consen 96 SFEHKHIVKAVAFSQDSNYLLT----GGQEKLLRVFDLNR--------PKAPPKEISGHTGGIRTVLWCHEDKC-ILSSA 162 (334)
T ss_pred hhhhhheeeeEEecccchhhhc----cchHHHhhhhhccC--------CCCCchhhcCCCCcceeEEEeccCce-EEeec
Confidence 4678899999999999999998 58999999999983 23455678899999999999988874 77778
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTK 219 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~ 219 (351)
.|++|++||..++.....+.... +|+++..+++|++| +....+.|.+||..+-..+..+..+. |.+..++|+
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~ 235 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK 235 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccccccccccCC
Confidence 99999999999987776666544 89999999998854 55567889999999988888887555 999999999
Q ss_pred CCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 220 KKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.. ++++|++|..++.||..+ +..+..+ ++|.++|.++.|+|+| ...++|+.||+|++|.+..
T Consensus 236 k~-~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 236 KE-FFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred Cc-eEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecC
Confidence 96 899999999999999998 5556665 8999999999999999 9999999999999999876
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=187.83 Aligned_cols=280 Identities=14% Similarity=0.186 Sum_probs=200.4
Q ss_pred CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC-------CCceEEEEeecCCcceEEEEEcccccCCC---------
Q 018700 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-------DQRIFSTVFSTGESYGAAIWQIPELYGQL--------- 105 (351)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~--------- 105 (351)
..+.++-+.+....+....-+--+....|+.|... |++++. |.-|..|.|||+.-.....
T Consensus 150 s~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAi----Gtmdp~IeIWDLDI~d~v~P~~~LGs~~ 225 (463)
T KOG0270|consen 150 SYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAI----GTMDPEIEIWDLDIVDAVLPCVTLGSKA 225 (463)
T ss_pred eEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEE----eccCceeEEeccccccccccceeechhh
Confidence 44455555555433332211112234457777432 335554 5789999999987321100
Q ss_pred ---CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC-C
Q 018700 106 ---NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-V 181 (351)
Q Consensus 106 ---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 181 (351)
.....+.-..-.+|++.|.++.|+..-++++++++.|.+|++||+.+++....+. .|...|.++.|+|.. .
T Consensus 226 sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~ 300 (463)
T KOG0270|consen 226 SKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-----HHGKKVQTLEWHPYEPS 300 (463)
T ss_pred hhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-----hcCCceeEEEecCCCce
Confidence 0001111112347999999999999998866666999999999999876554433 245589999999975 4
Q ss_pred cEEEeecCCeEEEEEcccCC-cCceeec-ceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE
Q 018700 182 NAVAATCESSVQFWDLRSMG-KTNSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259 (351)
Q Consensus 182 ~l~~~~~d~~i~iwd~~~~~-~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 259 (351)
.|++|+.|++|.+.|.|... .-..+.. +.|..++|+|...+.++++..||+++-+|+|.+++++.+++.|..+|.+++
T Consensus 301 ~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 301 VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence 57889999999999999532 2223332 229999999999988999999999999999999899999999999999999
Q ss_pred ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018700 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339 (351)
Q Consensus 260 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 339 (351)
+++.-+.+++|++.|+.|++|++.... ...+....-.-+...++++.|+-...++.||..+.+
T Consensus 381 ~n~~~p~~l~t~s~d~~Vklw~~~~~~-----------------~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDKVVKLWKFDVDS-----------------PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred ecCCCCcceeeccccceEEEEeecCCC-----------------CcccccccccccceeecccCCCcceEEEecCccceE
Confidence 999988999999999999999998621 111111111112367888899988889999999999
Q ss_pred EEeecCcc
Q 018700 340 VVESVKPF 347 (351)
Q Consensus 340 ~vw~~~~~ 347 (351)
+|||+-..
T Consensus 444 ~vwd~~~~ 451 (463)
T KOG0270|consen 444 RVWDIFTN 451 (463)
T ss_pred EEeecccC
Confidence 99998654
No 107
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=9.4e-27 Score=196.96 Aligned_cols=290 Identities=17% Similarity=0.227 Sum_probs=205.7
Q ss_pred CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe---EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccc
Q 018700 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE 100 (351)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~ 100 (351)
.....+.|+++ .+++.|.+.+.....-. ........|.+.|.++.|.|....|+++ +.|.++++||+.
T Consensus 60 ~~n~eHiLava----dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa----sGDsT~r~Wdvk- 130 (720)
T KOG0321|consen 60 APNKEHILAVA----DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA----SGDSTIRPWDVK- 130 (720)
T ss_pred CCCccceEEEe----cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc----cCCceeeeeeec-
Confidence 33345677775 46777777664432111 1124566899999999999944455554 789999999998
Q ss_pred ccCCCCCCcceeeee--eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--Cccc-----------------
Q 018700 101 LYGQLNSPQLERIAA--LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--NAQV----------------- 159 (351)
Q Consensus 101 ~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~----------------- 159 (351)
+.+.+.. +.+|...|.+++|.|.++.++++++.||.|.|||++.... ....
T Consensus 131 --------~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 131 --------TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred --------cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 4444444 7899999999999999998788889999999999975330 0000
Q ss_pred c---cccccCcccceee---eEECCCCCcEEEeec-CCeEEEEEcccCCcCceeec------------ce-eEEEEcCCC
Q 018700 160 Q---SKQSSGMLHYLSG---GAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEH------------AH-VRNVDYDTK 219 (351)
Q Consensus 160 ~---~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~------------~~-v~~~~~~~~ 219 (351)
. ......+...+.+ +.+..|...|++++. |+.|+|||++.......... .+ +.++.....
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 0 0001112223444 445567888998876 99999999997543322210 11 888888888
Q ss_pred CCcEEEEecCCCeEEEEecccCCc-ceeEeeCCCCce--eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018700 220 KKHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (351)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 296 (351)
|.+++|++ .|+.|++|+++.... ++..+.++...- ..-..+|++ .++++|+.|....+|.+...
T Consensus 283 Gt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~----------- 349 (720)
T KOG0321|consen 283 GTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSP----------- 349 (720)
T ss_pred CCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCc-----------
Confidence 99666655 599999999987543 455555443221 122368999 99999999999999999872
Q ss_pred cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccccc
Q 018700 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 350 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 350 (351)
......+.+|...|++++|.|..-.-++++++|..+++|++...+.+
T Consensus 350 -------e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 350 -------EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred -------cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 45666778999999999998865556889999999999999776554
No 108
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.6e-27 Score=206.74 Aligned_cols=233 Identities=20% Similarity=0.310 Sum_probs=196.6
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee-eeccccceeEEEecCCCCCcEEEEecC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDE 142 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d 142 (351)
+...+.+..|. ..++++ +..+.+|++|+.. ....+.. +.+|.+.|.++++.. +..+++.++.|
T Consensus 207 ~~~~~~~~q~~--~~~~~~----~s~~~tl~~~~~~---------~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D 270 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKS----GSDDSTLHLWDLN---------NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD 270 (537)
T ss_pred Ccchhhhheee--cCeEEe----cCCCceeEEeecc---------cceEEEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence 55778888888 445666 4789999999988 5666666 999999999999987 44458888999
Q ss_pred CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCC
Q 018700 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK 219 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~ 219 (351)
.++++||..++.....+. +|...+.++...+ ..+++|+.|.+|++|+++++..+..+. +| |+++..+
T Consensus 271 ~t~rvWd~~sg~C~~~l~-----gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQ-----GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD-- 340 (537)
T ss_pred CcEEeEecCCCcEEEEec-----CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--
Confidence 999999988765544433 5677888887653 567778899999999999999988888 35 9999998
Q ss_pred CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018700 220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299 (351)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 299 (351)
+. ++++|+.|++|++||.++ .++++.+.+|...|.++.+.+. ..+++|+.|++|++||++.
T Consensus 341 ~~-~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~--------------- 401 (537)
T KOG0274|consen 341 EP-LLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRT--------------- 401 (537)
T ss_pred CC-EEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCc---------------
Confidence 44 899999999999999997 8899999999999999988875 6899999999999999998
Q ss_pred ccccc-ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 300 NQRAN-SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 300 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
. +++.++.+|...|..+.+. +. +|++++.|+.|++||..+..
T Consensus 402 ----~~~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 402 ----KRKCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred ----hhhhhhhhcCCcccccccccc--cc-eeEeccccccEEEeecccCc
Confidence 7 8999999999988777665 34 89999999999999987654
No 109
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=184.56 Aligned_cols=211 Identities=12% Similarity=0.191 Sum_probs=172.5
Q ss_pred eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC------C-------CCCcccccccccCcccceeeeEECCC
Q 018700 113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC------S-------NKNAQVQSKQSSGMLHYLSGGAWDPH 179 (351)
Q Consensus 113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~------~-------~~~~~~~~~~~~~~~~~v~~~~~~~~ 179 (351)
-..+..|++++.+.+|+|||. ++++++.|..|+|.|++. . .+..........+|..+|+++.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 345678999999999999999 355558899999999872 1 11111223345578889999999999
Q ss_pred CCcEEEeecCCeEEEEEcccCCc---Cceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe---eCCC
Q 018700 180 DVNAVAATCESSVQFWDLRSMGK---TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---PGHT 252 (351)
Q Consensus 180 ~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~ 252 (351)
...|++++.|++|+++|...... ...++..+ +.++.|+|.|. ++++|.+..++++||+.+ .++...- ..|.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T-~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccc-eeEeeecCcccccc
Confidence 99999999999999999976433 33444455 99999999999 688899999999999997 4433322 3688
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-cc-cceEEEEEeCCCCCceE
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DY-EDSVYGLAWSSREPWIF 330 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l 330 (351)
..|+++.+++.+ .+.++++.||.|++||--+ .+++.++. .| ...|.+..|..+++ ++
T Consensus 262 ~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS-------------------~rCv~t~~~AH~gsevcSa~Ftkn~k-yi 320 (430)
T KOG0640|consen 262 GAITQVRYSSTG-SLYVTASKDGAIKLWDGVS-------------------NRCVRTIGNAHGGSEVCSAVFTKNGK-YI 320 (430)
T ss_pred cceeEEEecCCc-cEEEEeccCCcEEeecccc-------------------HHHHHHHHhhcCCceeeeEEEccCCe-EE
Confidence 999999999999 9999999999999999988 89998885 35 35799999999999 88
Q ss_pred EEeeeCCeEEEeecCcc
Q 018700 331 ASLSYDGRVVVESVKPF 347 (351)
Q Consensus 331 ~s~~~dg~v~vw~~~~~ 347 (351)
++.|.|..+++|++.+.
T Consensus 321 LsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTG 337 (430)
T ss_pred eecCCcceeeeeeecCC
Confidence 99999999999999764
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=199.12 Aligned_cols=244 Identities=14% Similarity=0.197 Sum_probs=200.3
Q ss_pred cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEEe
Q 018700 63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSI 140 (351)
Q Consensus 63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~ 140 (351)
.....+.+++.+|++++|++ |..-|+++||++. ..+....+..|+.+|.|+.|+.. +..+++.++
T Consensus 457 d~r~G~R~~~vSp~gqhLAs----GDr~GnlrVy~Lq---------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLAS----GDRGGNLRVYDLQ---------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred CcccceEEEEECCCcceecc----cCccCceEEEEeh---------hhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence 34568899999999999988 5788999999998 66777888999999999999863 344444558
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC--CcEEEeecCCeEEEEEcccCCcCceeec-----ce--e
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAATCESSVQFWDLRSMGKTNSIEH-----AH--V 211 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~--v 211 (351)
.|.-|.|||+...-... ....+|...|+++.|...| ..+++++.|..|.+--.+.......+.. .+ +
T Consensus 524 rdRlIHV~Dv~rny~l~----qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDLV----QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred CCceEEEEecccccchh----hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 99999999998533332 2344778899999998777 6688888898775433322111222221 12 9
Q ss_pred EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018700 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (351)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 288 (351)
..++..|..+ ++++++.|..|+|||+.. ++..+.|++ |++....+...|.| .|+++...|.++.++|+.+
T Consensus 600 YDm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~s---- 672 (1080)
T KOG1408|consen 600 YDMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVS---- 672 (1080)
T ss_pred EEeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEecc----
Confidence 9999999998 899999999999999998 667888874 66778889999999 9999999999999999999
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++++....+|...|+++.|.+|-+ .|++.+.||.|.||.++.
T Consensus 673 ---------------gEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 ---------------GECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ---------------chhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECch
Confidence 999999999999999999999998 799999999999999874
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.6e-26 Score=175.76 Aligned_cols=272 Identities=16% Similarity=0.257 Sum_probs=197.3
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEE
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVS 139 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~ 139 (351)
.+|.+-|+++.|.+.|++++++ +.|.+|+|||... ...++..-...+.|.+.|..+.|.+. |+ +++++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtC----SsDq~vkI~d~~~-----~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATC----SSDQTVKIWDSTS-----DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATC 79 (361)
T ss_pred cCCcceeeeeeecccCceeeec----cCCCcEEEEeccC-----CCCceEEeeeEEecCCcEEEEEecCccccc-eEEEE
Confidence 4789999999999999999885 8999999999753 23467788889999999999999664 44 34444
Q ss_pred ecCCcEEEEEcCCCCC----CcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccCC------cCceee
Q 018700 140 IDEENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMG------KTNSIE 207 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~------~~~~~~ 207 (351)
+.|+++.||.-..... ..-.......+....|+++.|.|. |-.|++++.||.+|||+....- ....++
T Consensus 80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 8999999998632111 111222233444568999999995 4567888999999999865432 222222
Q ss_pred -----c--ce--eEEEEcCCCC--CcEEEEecCC-----CeEEEEecccCCc---ceeEeeCCCCceeEEEecCCCC---
Q 018700 208 -----H--AH--VRNVDYDTKK--KHLLVTAADE-----SGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYD--- 265 (351)
Q Consensus 208 -----~--~~--v~~~~~~~~~--~~~l~~~~~d-----g~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--- 265 (351)
. .+ ..|+.|+|.. +.+|++|+.+ +.+.||......+ .+.++.+|..+|+.++|.|.-.
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 1 11 7899998753 2378888876 5788998765442 4556779999999999999642
Q ss_pred CeEEEeeCCCeEEEEEcCCCCCCCCCCcc-cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 266 GFILSAGTDSTVNLWLVSTSNHDELPSES-LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 266 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
.+||+++.|| |+||.+......-...+. ......+..-+.+..+..|...|+.+.|+-.|. +|++.|.||.||+|..
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhh
Confidence 5789999999 999999853322111111 111111223456777889999999999999998 9999999999999986
Q ss_pred C
Q 018700 345 K 345 (351)
Q Consensus 345 ~ 345 (351)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 4
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=3.2e-25 Score=187.26 Aligned_cols=264 Identities=12% Similarity=0.126 Sum_probs=185.4
Q ss_pred CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
..++.+.+|++.... . ...+..+ ..+..++|+|+++.++++ ++.++.|++||.. ..+....+..
T Consensus 8 ~~d~~v~~~d~~t~~--~-~~~~~~~-~~~~~l~~~~dg~~l~~~---~~~~~~v~~~d~~---------~~~~~~~~~~ 71 (300)
T TIGR03866 8 EKDNTISVIDTATLE--V-TRTFPVG-QRPRGITLSKDGKLLYVC---ASDSDTIQVIDLA---------TGEVIGTLPS 71 (300)
T ss_pred cCCCEEEEEECCCCc--e-EEEEECC-CCCCceEECCCCCEEEEE---ECCCCeEEEEECC---------CCcEEEeccC
Confidence 457889998876532 2 2333434 447789999999887665 3678999999987 4455555544
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC-eEEEEEc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-SVQFWDL 197 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~ 197 (351)
+.. +..++|+|+++.++++++.++.+++||+.+......... ...+.+++|+|++..++++..++ .+.+||.
T Consensus 72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence 433 567899999985444446689999999986432222111 12467899999999998887664 5778899
Q ss_pred ccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-----C--ceeEEEecCCCCCe-E
Q 018700 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-----H--WTWAVCCNPEYDGF-I 268 (351)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~-l 268 (351)
++++....+.... +..++|+|+++.+++++..++.|++||+++ .+.+..+..+. . ....++|+|++ .+ +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~ 222 (300)
T TIGR03866 145 KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDG-KTAF 222 (300)
T ss_pred CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCC-CEEE
Confidence 8776655444334 778999999985556666799999999987 44555544221 1 23468899999 55 4
Q ss_pred EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE-eeeCCeEEEeecCcc
Q 018700 269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS-LSYDGRVVVESVKPF 347 (351)
Q Consensus 269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~v~vw~~~~~ 347 (351)
++.+.++.+.+||.++ ++.+..+. +...+.+++|+|+++ .|++ .+.++.|++||+.+.
T Consensus 223 ~~~~~~~~i~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 223 VALGPANRVAVVDAKT-------------------YEVLDYLL-VGQRVWQLAFTPDEK-YLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred EEcCCCCeEEEEECCC-------------------CcEEEEEE-eCCCcceEEECCCCC-EEEEEcCCCCeEEEEECCCC
Confidence 4455677899999987 56554443 334689999999999 5555 467999999999864
Q ss_pred c
Q 018700 348 L 348 (351)
Q Consensus 348 ~ 348 (351)
.
T Consensus 282 ~ 282 (300)
T TIGR03866 282 K 282 (300)
T ss_pred c
Confidence 4
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.8e-27 Score=190.97 Aligned_cols=266 Identities=15% Similarity=0.207 Sum_probs=208.7
Q ss_pred EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018700 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (351)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 122 (351)
.+.+|.+.+.. ......--++.|.+++-+|.|.+|+++ +..+.|.+|.+. ++..+..+..|-..
T Consensus 62 ~l~vw~i~k~~---~~~q~~v~Pg~v~al~s~n~G~~l~ag----~i~g~lYlWels---------sG~LL~v~~aHYQ~ 125 (476)
T KOG0646|consen 62 LLHVWEILKKD---QVVQYIVLPGPVHALASSNLGYFLLAG----TISGNLYLWELS---------SGILLNVLSAHYQS 125 (476)
T ss_pred cccccccCchh---hhhhhcccccceeeeecCCCceEEEee----cccCcEEEEEec---------cccHHHHHHhhccc
Confidence 55555555432 222334457899999999999888873 588999999999 78999999999999
Q ss_pred eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC---C-cccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEE
Q 018700 123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK---N-AQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWD 196 (351)
Q Consensus 123 v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd 196 (351)
|+|+.|+.|+.+ +++++.||.|.+|.+...-. . .........+|.-+|+++...+. ..++++++.|.++++||
T Consensus 126 ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 126 ITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred eeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 999999999995 88889999999999763211 1 11122335678889999988764 45799999999999999
Q ss_pred cccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC---------------cceeEeeCCCC--ceeEE
Q 018700 197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------APIQELPGHTH--WTWAV 258 (351)
Q Consensus 197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~v~~~ 258 (351)
+..+..+.++..+. +.+++.+|-++ .++.|+++|.|.+.++.... ..+..+.+|.+ .|+|+
T Consensus 205 lS~g~LLlti~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 205 LSLGVLLLTITFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred eccceeeEEEecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 99999988888666 99999999998 78899999999998875432 23556778888 99999
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR 338 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 338 (351)
+.+-|| .+|++|+.||.++|||+.+ .++++++....++|+.+.+.|-.+..+..-.....
T Consensus 284 ais~Dg-tlLlSGd~dg~VcvWdi~S-------------------~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps 343 (476)
T KOG0646|consen 284 AISTDG-TLLLSGDEDGKVCVWDIYS-------------------KQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPS 343 (476)
T ss_pred EEecCc-cEEEeeCCCCCEEEEecch-------------------HHHHHHHhhhccccceeEeeccccceecccccCcc
Confidence 999999 9999999999999999998 88998887667889999986654433333333344
Q ss_pred EEEeecCc
Q 018700 339 VVVESVKP 346 (351)
Q Consensus 339 v~vw~~~~ 346 (351)
+-.|++..
T Consensus 344 ~~~~~lkr 351 (476)
T KOG0646|consen 344 LPNPHLKR 351 (476)
T ss_pred CCchHhhc
Confidence 45555443
No 114
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=201.62 Aligned_cols=242 Identities=15% Similarity=0.247 Sum_probs=192.7
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCC----------------------------C-e-----E-----
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG----------------------------T-E-----L----- 56 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~----------------------------~-~-----~----- 56 (351)
...|..+++++++.-++.| ++|+.|++|.+-... . . .
T Consensus 267 ~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred CCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 4578889999999999876 589999999877600 0 0 0
Q ss_pred ------------------EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 57 ------------------ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 57 ------------------~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
-...+.||.+.|.+|.||.++ +|+++ +-|.+|+||++. ...++..| .
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSS----SMDKTVRLWh~~---------~~~CL~~F-~ 407 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSS----SMDKTVRLWHPG---------RKECLKVF-S 407 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccCC-eeEec----cccccEEeecCC---------CcceeeEE-e
Confidence 002378999999999999855 67774 899999999998 56778877 7
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 198 (351)
|.+-|+||+|+|-....+++|+-|+.|+||++...+-....- ...-|++++|.|+|++.++|+.+|.+++|+.+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh------hhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 999999999999877778888999999999998532222211 22489999999999999999999999999998
Q ss_pred cCCcCceeec---------ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC--ceeEEEecCCCCC
Q 018700 199 SMGKTNSIEH---------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAVCCNPEYDG 266 (351)
Q Consensus 199 ~~~~~~~~~~---------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 266 (351)
..+....+.. .+ |+.+.|.|.....+++.+.|..|||||.+. ..++..|+++.. .-....|+.+| .
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dg-k 559 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDG-K 559 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCC-C
Confidence 7665443321 12 999999987765677789999999999987 667888886543 23567899999 9
Q ss_pred eEEEeeCCCeEEEEEcCC
Q 018700 267 FILSAGTDSTVNLWLVST 284 (351)
Q Consensus 267 ~l~s~~~dg~i~iwd~~~ 284 (351)
+|++++.|..|++|+...
T Consensus 560 ~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEEEeecCceEEEEeCCC
Confidence 999999999999999743
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.4e-26 Score=185.91 Aligned_cols=255 Identities=16% Similarity=0.212 Sum_probs=202.8
Q ss_pred EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC--C-CC-----Ccceeeeee-eccccceeEEEe
Q 018700 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ--L-NS-----PQLERIAAL-DAHVGKINCVLW 128 (351)
Q Consensus 58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~--~-~~-----~~~~~~~~~-~~h~~~v~~~~~ 128 (351)
...+..|.-.|.+++++|++++.+++ +.+++|.-|++...... . .. ..+.+...- +.|...+.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsa----sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSA----SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeec----CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 35566899999999999999999996 79999999998743211 0 00 011111112 378899999999
Q ss_pred cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec
Q 018700 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH 208 (351)
Q Consensus 129 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 208 (351)
++|+++ +++++.|..|.||+..+.+.... ..+|...|.+++|-.....+++++.|+.|++|+++....+.++.
T Consensus 211 S~Dgky-latgg~d~~v~Iw~~~t~ehv~~-----~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly- 283 (479)
T KOG0299|consen 211 SSDGKY-LATGGRDRHVQIWDCDTLEHVKV-----FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY- 283 (479)
T ss_pred cCCCcE-EEecCCCceEEEecCcccchhhc-----ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-
Confidence 999995 66778899999999997554433 45788899999999888889999999999999999887777776
Q ss_pred ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
+| |..+....-.+ .+.+|+.|+++++|++.. .....+.+|.+.+-|++|-.+ ..+++|+.+|.|.+|++..
T Consensus 284 GHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~K- 357 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLK- 357 (479)
T ss_pred CCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecc-
Confidence 55 88888887777 677788999999999964 344566789999999999876 5899999999999999987
Q ss_pred CCCCCCCcccccCCcccccccceeec-c-----------ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 286 NHDELPSESLVESPNQRANSLLNSYS-D-----------YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
.+++++.. + +..+|++++..|... ++|+|+.+|.|++|.+.+..
T Consensus 358 ------------------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 358 ------------------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred ------------------cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCc
Confidence 45544432 1 223899999999877 99999999999999998753
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=177.91 Aligned_cols=274 Identities=12% Similarity=0.156 Sum_probs=191.5
Q ss_pred EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018700 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD 135 (351)
Q Consensus 56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 135 (351)
+....+.+|.+.|++++|+.+|+.|+++ +.|++|+||++....+. ..+.++.- ..-+..+.+.|.||.+.+
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~----~~Dr~Ir~w~~~DF~~~----eHr~~R~n-ve~dhpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATI----SGDRSIRLWDVRDFENK----EHRCIRQN-VEYDHPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEE----eCCceEEEEecchhhhh----hhhHhhcc-ccCCCceEEEECCCcceE
Confidence 3345678999999999999999999997 58999999999731110 11111111 112346789999999975
Q ss_pred EEEEecCCcEEEEEcCCCCCC---ccccc----ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec
Q 018700 136 KLVSIDEENIFLWSLDCSNKN---AQVQS----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH 208 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~---~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 208 (351)
+++.-...++++|.+.....- ..... .....|.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+..
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 666666789999988643221 11110 0122345566677777788899999999999999999 888888875
Q ss_pred ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE
Q 018700 209 AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 279 (351)
Q Consensus 209 ~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 279 (351)
.. -+..+.+|+|+ ++++++....|++|.+--.+ ..+..+++|...|..++|+|+. ..++|.+.||++++
T Consensus 227 nq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRI 304 (420)
T ss_pred ccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEE
Confidence 44 77889999999 78888888899999863211 2356788999999999999999 99999999999999
Q ss_pred EEcCCCCCC-CCCC---------cccc-------cCCcc----------------cccccceee-ccccceEEEEEeCCC
Q 018700 280 WLVSTSNHD-ELPS---------ESLV-------ESPNQ----------------RANSLLNSY-SDYEDSVYGLAWSSR 325 (351)
Q Consensus 280 wd~~~~~~~-~~~~---------~~~~-------~~~~~----------------~~~~~~~~~-~~~~~~v~~~~~~~~ 325 (351)
||+...... +.+. .... .+|.. ..++....+ ..|...|.+++|+++
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 998653211 1000 0000 11110 011111111 347788999999999
Q ss_pred CCceEEEeeeCCeEEEee
Q 018700 326 EPWIFASLSYDGRVVVES 343 (351)
Q Consensus 326 ~~~~l~s~~~dg~v~vw~ 343 (351)
|+ ++++++ |..+++..
T Consensus 385 g~-~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 385 GK-YIATCG-DRYVRVIR 400 (420)
T ss_pred Cc-EEeeec-ceeeeeec
Confidence 99 788887 78888876
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3e-26 Score=204.97 Aligned_cols=254 Identities=17% Similarity=0.263 Sum_probs=200.2
Q ss_pred CCcceeeeeeCCCCCceEEEEeecC--CcceEEEEEcccccCCCCCC---cceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAIWQIPELYGQLNSP---QLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~--~d~~i~vw~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
++..|.+|..+|++..++++ | .|+.++||+.+......... -.+.+.+...|.+.|.|+.|+|||++ +++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTg----Gq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~-lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATG----GQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY-LAS 86 (942)
T ss_pred CCeeEEEEEecCCceeEecC----CccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe-Eee
Confidence 34679999999999888874 6 88899999987543221111 23556778899999999999999995 666
Q ss_pred EecCCcEEEEEcCCCCCCcccc--------------cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQ--------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN 204 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 204 (351)
|++|+.|.||+... ....... .....+|...|.+++|+|++.++++++.|++|.+|+.++.+.+.
T Consensus 87 GSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 87 GSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 68999999999883 1111111 11245688899999999999999999999999999999997777
Q ss_pred eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC------CceeEEEecCCCCCeEEEeeC--
Q 018700 205 SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT------HWTWAVCCNPEYDGFILSAGT-- 273 (351)
Q Consensus 205 ~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~-- 273 (351)
.+. +| |..+.|.|-|+ +|++-+.|++|++|++.. -...+.+..+. .....+.|+||| .+|++.-.
T Consensus 166 vl~-~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n 241 (942)
T KOG0973|consen 166 VLR-GHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVN 241 (942)
T ss_pred eee-cccccccceEECCccC-eeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCc-Ceecchhhcc
Confidence 777 66 99999999999 799999999999999776 33445544332 357889999999 89987643
Q ss_pred --CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC--------CC--------ceEEEeee
Q 018700 274 --DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR--------EP--------WIFASLSY 335 (351)
Q Consensus 274 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~--------~~l~s~~~ 335 (351)
-.++.|.+..+ ++.-..+-+|..++..++|+|. |. .++|+|+.
T Consensus 242 ~~~~~~~IieR~t-------------------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 242 GGKSTIAIIERGT-------------------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred CCcceeEEEecCC-------------------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 34788888887 8888889999999999999981 11 16889999
Q ss_pred CCeEEEeecCc
Q 018700 336 DGRVVVESVKP 346 (351)
Q Consensus 336 dg~v~vw~~~~ 346 (351)
|++|-||....
T Consensus 303 DrSlSVW~T~~ 313 (942)
T KOG0973|consen 303 DRSLSVWNTAL 313 (942)
T ss_pred CccEEEEecCC
Confidence 99999998754
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=4.2e-26 Score=173.84 Aligned_cols=208 Identities=14% Similarity=0.223 Sum_probs=179.6
Q ss_pred eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018700 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (351)
Q Consensus 115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (351)
.+++|+.+++.+.++.+|. ++++++.|.+..+|-..++++... ..+|+..|+++..+.+.+.+++|+.|.++++
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-----y~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-----YDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-----ecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 4678999999999999999 577779999999998876655443 4478889999999999999999999999999
Q ss_pred EEcccCCcCceeecce-eEEEEcCCCCCcEEEEecC-----CCeEEEEecccC------CcceeEeeCCCCceeEEEecC
Q 018700 195 WDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAAD-----ESGIHLWDLRML------KAPIQELPGHTHWTWAVCCNP 262 (351)
Q Consensus 195 wd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~ 262 (351)
||.++|+++..++.+. |..+.|+++|. +++...+ .+.|.++|++.. ..|+..+..+.+.++.+-|.|
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 9999999999998666 99999999998 4444433 468999999842 346788888899999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018700 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 342 (351)
.+ .+|++|..||.|.+||.+++ .+.+.....|+..|+.+.++|+.. ++++++.|.+-++|
T Consensus 158 l~-~~ii~Ghe~G~is~~da~~g------------------~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 158 LG-ETIIAGHEDGSISIYDARTG------------------KELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV 217 (327)
T ss_pred cC-CEEEEecCCCcEEEEEcccC------------------ceeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence 99 99999999999999999981 355666678999999999999998 89999999999999
Q ss_pred ecCcccc
Q 018700 343 SVKPFLS 349 (351)
Q Consensus 343 ~~~~~~~ 349 (351)
|+.+...
T Consensus 218 D~~tl~v 224 (327)
T KOG0643|consen 218 DVRTLEV 224 (327)
T ss_pred eccceee
Confidence 9987654
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-26 Score=176.42 Aligned_cols=281 Identities=16% Similarity=0.273 Sum_probs=214.5
Q ss_pred EEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc------cccC--
Q 018700 32 LTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP------ELYG-- 103 (351)
Q Consensus 32 ~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~------~~~~-- 103 (351)
++|+.+. +..-.+|.+.... ......+|.+.|++|.|++.+..++++ +.|++..||... ....
T Consensus 162 i~gtASA--DhTA~iWs~Esg~---CL~~Y~GH~GSVNsikfh~s~~L~lTa----SGD~taHIW~~av~~~vP~~~a~~ 232 (481)
T KOG0300|consen 162 ICGTASA--DHTARIWSLESGA---CLATYTGHTGSVNSIKFHNSGLLLLTA----SGDETAHIWKAAVNWEVPSNNAPS 232 (481)
T ss_pred ceeeccc--ccceeEEeecccc---ceeeecccccceeeEEeccccceEEEc----cCCcchHHHHHhhcCcCCCCCCCC
Confidence 5565433 3455566666543 446678999999999999988777664 789999999832 1100
Q ss_pred ----------------------CCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc
Q 018700 104 ----------------------QLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ 160 (351)
Q Consensus 104 ----------------------~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~ 160 (351)
..+.+. ..++..+.+|.+.|.+..|...++. +++++.|.+-.+||++++....
T Consensus 233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnlwDVEtge~v~--- 308 (481)
T KOG0300|consen 233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANLWDVETGEVVN--- 308 (481)
T ss_pred CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccceeeeeccCceec---
Confidence 001111 2456778999999999999999885 8888999999999999865433
Q ss_pred cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018700 161 SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLW 236 (351)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~ 236 (351)
...+|...++.++-+|..+.+++++.|.+.++||.+..-. +..|+ +| |+++.|..+.+ +++|++|.+|++|
T Consensus 309 --~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~--vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 309 --ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR--VVSGSDDRTVKVW 383 (481)
T ss_pred --cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCCc--eeecCCCceEEEe
Confidence 2346777899999999999999999999999999995433 33444 67 99999998875 8999999999999
Q ss_pred ecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce
Q 018700 237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS 316 (351)
Q Consensus 237 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (351)
|+++...++.++. ..++++.++.+..+ .+++.--.+..|++||+.-... ..-+...-++|...
T Consensus 384 dLrNMRsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~Rl---------------aRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 384 DLRNMRSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRL---------------ARLPRTSRQGHRRM 446 (481)
T ss_pred eeccccCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCcc---------------ccCCccccccccee
Confidence 9999888898887 47889999999877 8888888889999999985100 01122234689999
Q ss_pred EEEEEeCCCCC-ceEEEeeeCCeEEEeecCcc
Q 018700 317 VYGLAWSSREP-WIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 317 v~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~ 347 (351)
|.+++|..+.+ .-|++++.|..+.-|++...
T Consensus 447 V~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 447 VTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999975432 13789999999999998753
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1e-25 Score=183.77 Aligned_cols=244 Identities=19% Similarity=0.286 Sum_probs=193.7
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID 141 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 141 (351)
.+|...|.+++.++|+++|++ |+.|..|.||+.. +.+.+..+.+|.+.|.+++|-..... +++++.
T Consensus 199 ~~h~keil~~avS~Dgkylat----gg~d~~v~Iw~~~---------t~ehv~~~~ghr~~V~~L~fr~gt~~-lys~s~ 264 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLAT----GGRDRHVQIWDCD---------TLEHVKVFKGHRGAVSSLAFRKGTSE-LYSASA 264 (479)
T ss_pred ccccceeEEEEEcCCCcEEEe----cCCCceEEEecCc---------ccchhhcccccccceeeeeeecCccc-eeeeec
Confidence 389999999999999999988 5899999999998 78899999999999999999766554 788899
Q ss_pred CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC
Q 018700 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT 218 (351)
Q Consensus 142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~ 218 (351)
|..|++|+++..... ....+|...|.++.-..-++.+-+|+.|+++++|++..... ..+. ++ +.|++|-.
T Consensus 265 Drsvkvw~~~~~s~v-----etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr-g~~~sidcv~~In 337 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYV-----ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR-GGEGSIDCVAFIN 337 (479)
T ss_pred CCceEEEehhHhHHH-----HHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeee-CCCCCeeeEEEec
Confidence 999999999843222 23347788999998877777677777999999999954332 2333 33 99999987
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcceeEee-CC-----------CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELP-GH-----------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 286 (351)
+. -+++|+.+|.|.+|++-+ ++|+.+.. .| ..+|++++..|.. .++++|+.+|.|++|-+..+.
T Consensus 338 ~~--HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 338 DE--HFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cc--ceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc
Confidence 76 489999999999999987 66666543 22 2389999999988 999999999999999998721
Q ss_pred CCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 287 HDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
. .-.++..+. -.+-|++++|+++|.++++..+....+--|-...
T Consensus 414 r---------------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 414 R---------------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred c---------------ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 1 134555554 4567999999999997888888777776665543
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=182.43 Aligned_cols=287 Identities=11% Similarity=0.128 Sum_probs=224.4
Q ss_pred eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018700 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw 96 (351)
..+..+.++|....++++ +.++.+++++++...++.+ ..+.--..+|.+++|.|+|...+.+ ++.-..+..|
T Consensus 214 ~~I~sv~FHp~~plllva----G~d~~lrifqvDGk~N~~l-qS~~l~~fPi~~a~f~p~G~~~i~~---s~rrky~ysy 285 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVA----GLDGTLRIFQVDGKVNPKL-QSIHLEKFPIQKAEFAPNGHSVIFT---SGRRKYLYSY 285 (514)
T ss_pred CCceEEEecCCCceEEEe----cCCCcEEEEEecCccChhh-eeeeeccCccceeeecCCCceEEEe---cccceEEEEe
Confidence 467788899998888876 4689999999998777644 4555567899999999999944443 4788899999
Q ss_pred EcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 97 QIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
|+.+ .....+....++. ..+.....+++++. ++..+..|.|.+.-..++.....+.... .|.++.
T Consensus 286 Dle~-------ak~~k~~~~~g~e~~~~e~FeVShd~~f-ia~~G~~G~I~lLhakT~eli~s~KieG------~v~~~~ 351 (514)
T KOG2055|consen 286 DLET-------AKVTKLKPPYGVEEKSMERFEVSHDSNF-IAIAGNNGHIHLLHAKTKELITSFKIEG------VVSDFT 351 (514)
T ss_pred eccc-------cccccccCCCCcccchhheeEecCCCCe-EEEcccCceEEeehhhhhhhhheeeecc------EEeeEE
Confidence 9983 2344444455554 45677788999994 5555888999999888765554444332 899999
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc-----CCcceeE
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM-----LKAPIQE 247 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~ 247 (351)
|+.+++.|++.+.+|.|.+||++...++..+.... -++++.++++. +||+|+..|.|.|||..+ ..+|+..
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhh
Confidence 99999999999999999999999998888887444 67888889998 899999999999999654 1357777
Q ss_pred eeCCCCceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc---ccceEEEEEe
Q 018700 248 LPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLAW 322 (351)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~ 322 (351)
+..-...|++++|+|+. .+||.++. +..+++-.+.+ ......+.. .-..|++++|
T Consensus 431 ~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS-------------------~TVFsNfP~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPS-------------------CTVFSNFPTSNTKVGHVTCMAF 490 (514)
T ss_pred hhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccc-------------------eeeeccCCCCCCcccceEEEEe
Confidence 77778899999999999 88887765 66889888776 333333322 2235899999
Q ss_pred CCCCCceEEEeeeCCeEEEeecCcc
Q 018700 323 SSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 323 ~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+|.+. +||.|..+|.|.+|.+..|
T Consensus 491 SP~sG-~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 491 SPNSG-YLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred cCCCc-eEEeecCCCceeeEeeccC
Confidence 99988 8999999999999998643
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-25 Score=172.60 Aligned_cols=218 Identities=19% Similarity=0.312 Sum_probs=180.6
Q ss_pred CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCC--ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018700 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 116 (351)
+.+..|+++++.... ....+..|.+.|+++.|.+.-. .|+++ +.||.|.+|+.. .+..+..+
T Consensus 60 ssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~----sdDG~i~iw~~~---------~W~~~~sl 123 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSG----SDDGHIIIWRVG---------SWELLKSL 123 (362)
T ss_pred CCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeee----cCCCcEEEEEcC---------CeEEeeee
Confidence 467889999887643 3456678999999999998765 78885 799999999998 88999999
Q ss_pred eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018700 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (351)
Q Consensus 117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 196 (351)
++|.+.|+.++.+|.++ +.++-+.|+.++.||+-.+.......... ....+.|+|.|.+++.+..+ .|-+|.
T Consensus 124 K~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~F~v~~~~-~i~i~q 195 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDHFVVSGRN-KIDIYQ 195 (362)
T ss_pred cccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCEEEEEecc-EEEEEe
Confidence 99999999999999999 35555999999999998765443333322 44559999999988887755 588999
Q ss_pred cccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEe--cCCCCCeEEEeeC
Q 018700 197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC--NPEYDGFILSAGT 273 (351)
Q Consensus 197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~ 273 (351)
+.+......+..+. +.|+.|...+ .+++|.+|+.|++||... ..+...+.+|...|..+.+ .|++ .+|+|++.
T Consensus 196 ~d~A~v~~~i~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSS 271 (362)
T KOG0294|consen 196 LDNASVFREIENPKRILCATFLDGS--ELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASS 271 (362)
T ss_pred cccHhHhhhhhccccceeeeecCCc--eEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEecc
Confidence 99877776666444 7788887655 588899999999999987 7789999999999999984 5677 89999999
Q ss_pred CCeEEEEEcCC
Q 018700 274 DSTVNLWLVST 284 (351)
Q Consensus 274 dg~i~iwd~~~ 284 (351)
||.|++||++.
T Consensus 272 DG~I~vWd~~~ 282 (362)
T KOG0294|consen 272 DGFIKVWDIDM 282 (362)
T ss_pred CceEEEEEccc
Confidence 99999999987
No 123
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-25 Score=190.15 Aligned_cols=238 Identities=18% Similarity=0.323 Sum_probs=192.4
Q ss_pred eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeec-CCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFS-HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
..++.+.+++++.-|++|+ .++.+.+|+...... ...+.+ |...|-+++|. ..+++. |+.++.|..
T Consensus 218 ~~vtSv~ws~~G~~LavG~----~~g~v~iwD~~~~k~---~~~~~~~h~~rvg~laW~---~~~lss---Gsr~~~I~~ 284 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGT----SDGTVQIWDVKEQKK---TRTLRGSHASRVGSLAWN---SSVLSS---GSRDGKILN 284 (484)
T ss_pred CceEEEEECCCCCEEEEee----cCCeEEEEehhhccc---cccccCCcCceeEEEecc---CceEEE---ecCCCcEEE
Confidence 4566777888999999997 578999999887543 344555 99999999998 344444 689999999
Q ss_pred EEcccccCCCCCCcceee-eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018700 96 WQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (351)
+|+.. .+.. ..+.+|...|..++|++++.+ ++.++.|+.+.|||.........+ ..|...|.++
T Consensus 285 ~dvR~---------~~~~~~~~~~H~qeVCgLkws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~-----~~H~aAVKA~ 349 (484)
T KOG0305|consen 285 HDVRI---------SQHVVSTLQGHRQEVCGLKWSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTF-----TEHTAAVKAL 349 (484)
T ss_pred EEEec---------chhhhhhhhcccceeeeeEECCCCCe-eccCCCccceEeccCCCccccEEE-----eccceeeeEe
Confidence 99983 2222 248899999999999999994 555589999999999543333222 3577799999
Q ss_pred EECCCCCc-EEEee--cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE-ecCCCeEEEEecccCCcceeEee
Q 018700 175 AWDPHDVN-AVAAT--CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 175 ~~~~~~~~-l~~~~--~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
+|+|-..- |++|+ .|+.|++||..++..+..+..+. |.++.|++..+.++.+ |..+..|.||+..+ .+.+..+.
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~ 428 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELL 428 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeec
Confidence 99997655 55543 69999999999999999888666 9999999999755544 44677999999998 56788999
Q ss_pred CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+|...|..++++|+| ..+++|+.|.++++|++-.
T Consensus 429 gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 429 GHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence 999999999999999 9999999999999999976
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.4e-27 Score=203.17 Aligned_cols=234 Identities=18% Similarity=0.301 Sum_probs=199.3
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+..|...|.++..-...+.++. ||.|..+.+|.+. ....+..+.+|..+|.++.|+++.. ++.++
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~----Gg~~~k~~L~~i~---------kp~~i~S~~~hespIeSl~f~~~E~-Llaag 88 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVT----GGEDEKVNLWAIG---------KPNAITSLTGHESPIESLTFDTSER-LLAAG 88 (825)
T ss_pred hhhhhhhhhceeeeeccceeecc----CCCceeecccccc---------CCchhheeeccCCcceeeecCcchh-hhccc
Confidence 34568888888888555555555 5899999999988 4566667899999999999999887 46667
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEc
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY 216 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~ 216 (351)
+.+|+|++||+....... ...+|...+..+.|+|.+.+.+.++.|..+++||++...+...+.. | +.++.|
T Consensus 89 sasgtiK~wDleeAk~vr-----tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~l 162 (825)
T KOG0267|consen 89 SASGTIKVWDLEEAKIVR-----TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRL 162 (825)
T ss_pred ccCCceeeeehhhhhhhh-----hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEee
Confidence 889999999999644333 3346777999999999999999999999999999998778888874 6 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018700 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (351)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 296 (351)
+|+|+ +++.|++|..++|||+.. ++.+..|..|+..+..+.|+|.. .++++|+.|+++++||+++
T Consensus 163 sP~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet------------ 227 (825)
T KOG0267|consen 163 SPDGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET------------ 227 (825)
T ss_pred cCCCc-eeeccCCcceeeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeeccce------------
Confidence 99999 899999999999999987 77899999999999999999998 9999999999999999998
Q ss_pred cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018700 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
.+.+...+.....|.+++|+|++. .+++|..+
T Consensus 228 -------fe~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 228 -------FEVISSGKPETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred -------eEEeeccCCccCCceeeeecCCce-eeecCchh
Confidence 677777777778899999999998 66666543
No 125
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=179.17 Aligned_cols=212 Identities=16% Similarity=0.293 Sum_probs=167.8
Q ss_pred eeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCC-------cc----cccccccCcccceeeeEECCCCC-c
Q 018700 116 LDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKN-------AQ----VQSKQSSGMLHYLSGGAWDPHDV-N 182 (351)
Q Consensus 116 ~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~-------~~----~~~~~~~~~~~~v~~~~~~~~~~-~ 182 (351)
.-.|.+.+..+.-++-++..++++ +..|.|+||++...-.. .. .......+|...-++++|+|-.. .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 346788888888888876657777 88899999998632110 00 00112346777889999999433 3
Q ss_pred EEEeecCCeEEEEEcccCCcC---ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC-CcceeEeeCCCCce
Q 018700 183 AVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHTHWT 255 (351)
Q Consensus 183 l~~~~~d~~i~iwd~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v 255 (351)
|++|..-+.|++|...++.-. ..+. +| |..++|+|....+|++|+-||+|+|||+|.. +++....+.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 777777889999998876422 1222 34 9999999999889999999999999999974 22334447899999
Q ss_pred eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018700 256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (351)
Q Consensus 256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (351)
+-|.|+... .+||+|+.||+++|||++.... ++++..|+.|..+|++|.|+|.....|+++|.
T Consensus 306 NVISWnr~~-~lLasG~DdGt~~iwDLR~~~~----------------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 306 NVISWNRRE-PLLASGGDDGTLSIWDLRQFKS----------------GQPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred eeEEccCCc-ceeeecCCCceEEEEEhhhccC----------------CCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 999999998 6999999999999999997432 68899999999999999999988779999999
Q ss_pred CCeEEEeecC
Q 018700 336 DGRVVVESVK 345 (351)
Q Consensus 336 dg~v~vw~~~ 345 (351)
|..|.+||+.
T Consensus 369 D~QitiWDls 378 (440)
T KOG0302|consen 369 DNQITIWDLS 378 (440)
T ss_pred CCcEEEEEee
Confidence 9999999986
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-24 Score=163.79 Aligned_cols=239 Identities=18% Similarity=0.330 Sum_probs=186.4
Q ss_pred CcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeC-C-CCCceEEEEeecCCcceEEEEEcccccCC
Q 018700 27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC-P-FDQRIFSTVFSTGESYGAAIWQIPELYGQ 104 (351)
Q Consensus 27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~-~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~ 104 (351)
.+.|++.. ..++.|+++...+.+.......+.+|.++|+.++|- | .|..|+++ +.|+.|.||+-+
T Consensus 22 ygkrlATc----sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc----sYDgkVIiWke~----- 88 (299)
T KOG1332|consen 22 YGKRLATC----SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC----SYDGKVIIWKEE----- 88 (299)
T ss_pred hcceeeee----cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe----ecCceEEEEecC-----
Confidence 45566554 468999999999987766778999999999999994 5 45555553 899999999977
Q ss_pred CCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC---C
Q 018700 105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH---D 180 (351)
Q Consensus 105 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 180 (351)
.+..........|...|++++|.|.+..+++++ +.||.|.|.+.+..... ........|.-.|++++|.|- |
T Consensus 89 --~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 89 --NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--TTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred --CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--cchhhhhccccccceeeecCcCCCc
Confidence 345667777889999999999999987767776 88999999999865221 122223356778999999986 3
Q ss_pred -----------CcEEEeecCCeEEEEEcccCCcC--ceeecce---eEEEEcCCCC---CcEEEEecCCCeEEEEecccC
Q 018700 181 -----------VNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDTKK---KHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 181 -----------~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~---v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~ 241 (351)
+.|++|+.|+.|+||+..+++-. ..+. +| |+.++|.|.- +..+++++.||++.||-.+..
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 45999999999999999886422 2233 56 9999999975 347999999999999988743
Q ss_pred Ccc--eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 242 KAP--IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 242 ~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
..+ ...++.....+..+.|++.| ++|+.++.|+.+.+|.-..
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCC
Confidence 222 23344456789999999999 9999999999999997765
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=2.1e-24 Score=176.08 Aligned_cols=259 Identities=15% Similarity=0.199 Sum_probs=193.9
Q ss_pred EeeecCCcceeeeeeCCCCC-ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 137 (351)
....-+.+.|++++|+|... .++++ |..-|.|-+||+... .+...-+..+..|.++|.++.|+|.+...++
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~---GdK~G~VG~Wn~~~~-----~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAV---GDKGGQVGLWNFGTQ-----EKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEE---ccCCCcEEEEecCCC-----CCccCceEEeccCCccccceEecCCChhhee
Confidence 34556889999999999877 66666 688899999999521 1233456677899999999999999877788
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
+++.||+|++-|++.... ..+.... .....+.++.|+.+...++++..=|.+.+||++++........-| |.++
T Consensus 252 ssSyDGtiR~~D~~~~i~-e~v~s~~--~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNIS-EEVLSLD--TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeccCceeeeeeecchhh-HHHhhcC--ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 889999999999985322 2222211 122367788899888889998887899999999876532222233 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCc---ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 291 (351)
+++|..++++++++.|++++|||+|.... |+.....|...|.++.|+|.+ ..|+|.+.|..|+|||..-.+..
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~--- 404 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAK--- 404 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-CceEeeccCCceEEeeccccccc---
Confidence 99999999999999999999999997432 233444699999999999999 55999999999999999521110
Q ss_pred CcccccCCcccccccceeecc---ccc--eEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 292 SESLVESPNQRANSLLNSYSD---YED--SVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.++..++.. +.. ......|.|+.. +++.|-.-..|-|+|-.
T Consensus 405 ------------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 405 ------------DEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGN 450 (498)
T ss_pred ------------CCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCC
Confidence 333333321 111 234567999888 89999888888888865
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-26 Score=199.01 Aligned_cols=216 Identities=19% Similarity=0.387 Sum_probs=186.6
Q ss_pred CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
..+..+++|+.. .+..|...+.++..-..++ .++.++.|..+-+|.+........ +.+|
T Consensus 11 ~~~t~Lr~~~~~---------------~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-----~~~h 69 (825)
T KOG0267|consen 11 KRATKLRVWDTR---------------EFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-----LTGH 69 (825)
T ss_pred eeeeccccccch---------------hhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-----eecc
Confidence 345567788765 2346888888888744555 366668888888999886544432 4478
Q ss_pred ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018700 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (351)
..+|.++.|+++...|++|+.+|+|++||++..+.++++. +| +.++.|+|.+. +++.|+.|+.+.+||.+. ..+
T Consensus 70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk-~Gc 146 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK-KGC 146 (825)
T ss_pred CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-Eeccccccccceehhhhc-cCc
Confidence 8899999999999999999999999999999999888887 55 89999999998 679999999999999997 568
Q ss_pred eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
.+.+.+|...+..+.|+|+| +++++++.|.+++|||... ++.+..|+.|+..+..+.|+|
T Consensus 147 ~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~a-------------------gk~~~ef~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTA-------------------GKLSKEFKSHEGKVQSLEFHP 206 (825)
T ss_pred eeeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccc-------------------cccccccccccccccccccCc
Confidence 99999999999999999999 9999999999999999998 999999999999999999999
Q ss_pred CCCceEEEeeeCCeEEEeecCccc
Q 018700 325 REPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
..- ++++|+.|++|++||++++.
T Consensus 207 ~e~-Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 207 LEV-LLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred hhh-hhccCCCCceeeeeccceeE
Confidence 876 89999999999999999654
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.1e-23 Score=180.13 Aligned_cols=283 Identities=21% Similarity=0.326 Sum_probs=200.1
Q ss_pred CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCC--ceEEEEeecCCcceEEEEEcccccCCC------------C
Q 018700 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAAIWQIPELYGQL------------N 106 (351)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~~~~~~~~~d~~i~vw~~~~~~~~~------------~ 106 (351)
+..+.+.... ..+......+.||.+.|.+++|...+. .+++. ++.|..||||.+....... +
T Consensus 168 ~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS---~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 168 KFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLAS---SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred ceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEe---cCCceEEEEEEEEecCCccccccccccccccC
Confidence 3444444444 223445577889999999999987654 44443 6999999999986432110 1
Q ss_pred CCcceeee----------eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeee
Q 018700 107 SPQLERIA----------ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 107 ~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~ 174 (351)
.+...... .+.+|++-|.++.|+|.+.. +++++.|.++.+|...+..... ........+.....++.
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~-LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~ 322 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD-LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGG 322 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh-heecccCcceEEEecCCccceEEEEEEeecccccccceeeE
Confidence 11111121 23489999999999999964 7788889999999987542221 22222222334468889
Q ss_pred EECCCCCcEEEeecCCeEEEEEcccCC--cCceeecce---eEEEEcCCCCCcEEEEecCCCe-----------------
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESG----------------- 232 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~----------------- 232 (351)
.|+|+++.+++-+..|..++|-..... .......+| |.+++|+|.|. +|++.+.|-+
T Consensus 323 lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 323 LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeec
Confidence 999999999999999999999832211 112222355 88888888888 5666665544
Q ss_pred --------------------------------------------------------------------------------
Q 018700 233 -------------------------------------------------------------------------------- 232 (351)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (351)
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence
Q ss_pred ------------------------------------------------------------------------EEEEeccc
Q 018700 233 ------------------------------------------------------------------------IHLWDLRM 240 (351)
Q Consensus 233 ------------------------------------------------------------------------i~i~d~~~ 240 (351)
|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 56666554
Q ss_pred CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018700 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (351)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (351)
-...+.+.+|.-.|+.++|+|+| ++|++.+.|.++.+|........ .......+.|+.-|++.
T Consensus 562 -W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~---------------e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 562 -WLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD---------------EFRFACLKAHTRIIWDC 624 (764)
T ss_pred -hhhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch---------------hhhhccccccceEEEEc
Confidence 23456778899999999999999 99999999999999998652111 11133367899999999
Q ss_pred EeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 321 AWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 321 ~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+|+|++. +++|+|.|.+|++|..++.
T Consensus 625 sW~pde~-~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 625 SWSPDEK-YFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccCcccc-eeEEecCCceEEEEeccCc
Confidence 9999998 7999999999999998764
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-23 Score=181.17 Aligned_cols=314 Identities=11% Similarity=0.157 Sum_probs=220.3
Q ss_pred eeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEee
Q 018700 8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFS 86 (351)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~ 86 (351)
.+|..+.-.--|+.+.-+|.-..+++|. .+|+|.+.++.-+.- ...+.|. +.|++++|..||..++++
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dki----l~sFk~d~g~VtslSFrtDG~p~las--- 262 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKI----LMSFKQDWGRVTSLSFRTDGNPLLAS--- 262 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcE----EEEEEccccceeEEEeccCCCeeEEe---
Confidence 3454444334466666777777788875 579999999887642 2223464 999999999999998887
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 165 (351)
++..|.+.+||++ ..+.+..+ ..|.+.|....|.|..+ ++++++.|+.+++|=.+++....+++. ...
T Consensus 263 ~~~~G~m~~wDLe---------~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR-~R~ 331 (910)
T KOG1539|consen 263 GRSNGDMAFWDLE---------KKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLR-SRG 331 (910)
T ss_pred ccCCceEEEEEcC---------CCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchhee-ecc
Confidence 5778999999998 44444444 47889999999999887 455668899988887665443322222 234
Q ss_pred CcccceeeeEEC-CCCCcEEEeecCCeE----------------------------------------------------
Q 018700 166 GMLHYLSGGAWD-PHDVNAVAATCESSV---------------------------------------------------- 192 (351)
Q Consensus 166 ~~~~~v~~~~~~-~~~~~l~~~~~d~~i---------------------------------------------------- 192 (351)
||..+..++.|. .++..+++++.|+++
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 566666666664 344445555555544
Q ss_pred -------------EEEEcccCCc-Cceeecc-----e--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe---
Q 018700 193 -------------QFWDLRSMGK-TNSIEHA-----H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--- 248 (351)
Q Consensus 193 -------------~iwd~~~~~~-~~~~~~~-----~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--- 248 (351)
+.|+.++... ...+.+. . +.+++.++.|+ +.+.|...|.|-+|++++ +.....+
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQS-Gi~r~sf~~~ 489 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQS-GIHRKSFGDS 489 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEccc-CeeecccccC
Confidence 4455544332 1222211 1 78899999998 788899999999999997 6556666
Q ss_pred eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC------CC-------------cccccC---Cccccccc
Q 018700 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL------PS-------------ESLVES---PNQRANSL 306 (351)
Q Consensus 249 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~-------------~~~~~~---~~~~~~~~ 306 (351)
..|..+|++++....+ +.+++++.+|-+++||......... .. ...+.. -+....+.
T Consensus 490 ~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred ccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 4799999999999988 9999999999999999987531100 00 000000 00022345
Q ss_pred ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
++.+.+|.+.|++++|||||+ -|++++.|++||+||+++.
T Consensus 569 vR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTG 608 (910)
T ss_pred hHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCc
Confidence 667789999999999999999 5889999999999999863
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.5e-24 Score=183.97 Aligned_cols=240 Identities=16% Similarity=0.242 Sum_probs=196.5
Q ss_pred EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeE-EEecCCCCCc
Q 018700 57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSGRHD 135 (351)
Q Consensus 57 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~ 135 (351)
+...+.+|...|..+++.+.. .+++ ++.|+++++|+-.. ........+.+|.+-|.+ +++.+..+..
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s----~sRd~t~~vw~~~~-------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIIS----GSRDGTVKVWAKKG-------KQYLETHAFEGPKGFIANSICYAESDKGR 73 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEee----cCCCCceeeeeccC-------cccccceecccCcceeeccceeccccCcc
Confidence 346678999999999887644 5555 48999999999651 234444567788888877 8888755544
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR 212 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~ 212 (351)
++.++.|..|.+|.+........ ..+|...|.+++...++. +++|+.|.++++|-... +...++ +| |.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~-----LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~-gH~asVW 144 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYT-----LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQ-GHTASVW 144 (745)
T ss_pred eEeecccceEEEEecCCCCchhh-----hhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccC-Ccchhee
Confidence 88889999999999986544333 336788999999877666 99999999999998653 444555 66 99
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 292 (351)
.++.-|++ .++||+.|.+|++|.- ++.+++|.+|..-|..+++-+++ .|++++.||.|++|++.
T Consensus 145 Av~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~--------- 208 (745)
T KOG0301|consen 145 AVASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD--------- 208 (745)
T ss_pred eeeecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEecc---------
Confidence 99999988 5899999999999995 45789999999999999999874 68999999999999994
Q ss_pred cccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
++++..+.+|++-|.+++..++++ +++++++|+++++|+..
T Consensus 209 -----------ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 209 -----------GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -----------CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 789999999999999999766666 89999999999999976
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=177.63 Aligned_cols=285 Identities=14% Similarity=0.198 Sum_probs=224.7
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAA 94 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~ 94 (351)
.+.+.+++.+....++++|. .++.|.+|++.. +......+.+++ ..|.+++|++ +.+|++. +.+|.|.
T Consensus 25 Ps~I~slA~s~kS~~lAvsR----t~g~IEiwN~~~--~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~----g~sg~i~ 93 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSR----TDGNIEIWNLSN--NWFLEPVIHGPEDRSIESLAWAE-GGRLFSS----GLSGSIT 93 (691)
T ss_pred ccceEEEEEeccCCceeeec----cCCcEEEEccCC--CceeeEEEecCCCCceeeEEEcc-CCeEEee----cCCceEE
Confidence 45666777778888888874 578999999887 556666666766 6899999996 5577775 7899999
Q ss_pred EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018700 95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (351)
-||+. ++++...+....+.|++++.+|.+.. ++.+++||.+..++...+........ ...+..+.++
T Consensus 94 EwDl~---------~lk~~~~~d~~gg~IWsiai~p~~~~-l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLsl 160 (691)
T KOG2048|consen 94 EWDLH---------TLKQKYNIDSNGGAIWSIAINPENTI-LAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSL 160 (691)
T ss_pred EEecc---------cCceeEEecCCCcceeEEEeCCccce-EEeecCCceEEEEecCCceEEEEeec---ccccceEEEE
Confidence 99999 78888889889999999999999984 77778999777777765432222221 1224589999
Q ss_pred EECCCCCcEEEeecCCeEEEEEcccCCcCceee-------cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (351)
+|+|++..++.|+.||.|++||..++..+.... ... |.++.|-.++ .+++|.+.|+|.+||... +..
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~-gTL 237 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF-GTL 237 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC-cch
Confidence 999999999999999999999999887655221 111 8888888777 599999999999999987 778
Q ss_pred eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
++.+..|...|.+++.++++ ..+++++.|+.|..|.......+ +........|...|.+++..+
T Consensus 238 iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~---------------wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSE---------------WVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccc---------------eeeeccccCCcccceeeeeec
Confidence 89999999999999999998 89999999999988877762111 223333456777899999987
Q ss_pred CCCceEEEeeeCCeEEEeecCc
Q 018700 325 REPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+ .+++|+.|..+.+-....
T Consensus 302 ~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 302 N---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred c---eEEecceeeEEEEccccc
Confidence 6 789999999988766544
No 133
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=178.06 Aligned_cols=206 Identities=18% Similarity=0.284 Sum_probs=166.9
Q ss_pred eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeE
Q 018700 113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV 192 (351)
Q Consensus 113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 192 (351)
+..+.+|.+.|.|++=+|..-..+++++.||.|+|||+........+ ..|.+.|.++++.. ..+++++.|.+|
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-----ecccCceeeEEecc--cceEEecCCcce
Confidence 45678999999999999988555777789999999999964433332 24566899998875 567788888877
Q ss_pred EEEEc--------------------------------------ccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCe
Q 018700 193 QFWDL--------------------------------------RSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESG 232 (351)
Q Consensus 193 ~iwd~--------------------------------------~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~ 232 (351)
+.|-+ +...++..+..+. +.++.|+|....+|+++.+|+.
T Consensus 132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 76653 2223333443333 8999999999989999999999
Q ss_pred EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018700 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD 312 (351)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
|.+||+|. ..|++.+. -...-+.|+|+|.+ ..+.+|+.|..++.||++. ...++..+.+
T Consensus 212 IvLyD~R~-~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~------------------l~~p~~v~~d 270 (433)
T KOG0268|consen 212 IVLYDLRQ-ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRN------------------LSRPLNVHKD 270 (433)
T ss_pred eEEEeccc-CCccceee-eeccccceecCccc-cceeeccccccceehhhhh------------------hcccchhhcc
Confidence 99999998 66777765 34556889999977 8899999999999999997 2678889999
Q ss_pred ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 313 YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
|.+.|.+++|+|.|+ -+++||.|.+|+||.++..
T Consensus 271 hvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cceeEEEeccCCCcc-hhccccccceEEEeecCCC
Confidence 999999999999999 7999999999999998753
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-24 Score=168.45 Aligned_cols=225 Identities=18% Similarity=0.286 Sum_probs=175.1
Q ss_pred eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC----------cccccccccCcccceeeeEECCCCCcEE-
Q 018700 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN----------AQVQSKQSSGMLHYLSGGAWDPHDVNAV- 184 (351)
Q Consensus 116 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 184 (351)
.+.|.+.|+++...+....++++++.||.|.+||++..... ..+-..+..+|...|.++.|-|-+.-++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 35688999999998876656888899999999999864311 1112234567888999999999766555
Q ss_pred EeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCC--cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018700 185 AATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (351)
Q Consensus 185 ~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 261 (351)
+++.|.++++||..+.+....|.-.. |.+-+++|-.. -++++|..+-.|++.|+.. +..-+.+.+|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEec
Confidence 55789999999999988888887555 88888888542 3788899999999999998 77899999999999999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018700 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341 (351)
Q Consensus 262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v 341 (351)
|..+..|++|+.||.|++||++..+.--. -.+ ..+....+.+.+-..|.+.|++++|+.++. ++++++.|..+++
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~---~lD-~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFR---VLD-QHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRV 272 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeE---Eee-cccCccCccccccccccceeeeeeecccch-hhhhccCccceEE
Confidence 99988899999999999999997311000 000 000011233334567889999999999998 8999999999999
Q ss_pred eecCc
Q 018700 342 ESVKP 346 (351)
Q Consensus 342 w~~~~ 346 (351)
|+..+
T Consensus 273 wn~~~ 277 (397)
T KOG4283|consen 273 WNMES 277 (397)
T ss_pred eeccc
Confidence 99864
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=7.1e-25 Score=180.98 Aligned_cols=245 Identities=15% Similarity=0.225 Sum_probs=198.0
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec--cccceeEEEecCCCCCcEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--HVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~ 137 (351)
....|..-|..+..|...+++++ +..|-|+|||+.... ...++..+.. ...-|.++...|||+. ++
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyT-----gGkgcVKVWdis~pg------~k~PvsqLdcl~rdnyiRSckL~pdgrt-Li 481 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYT-----GGKGCVKVWDISQPG------NKSPVSQLDCLNRDNYIRSCKLLPDGRT-LI 481 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEe-----cCCCeEEEeeccCCC------CCCccccccccCcccceeeeEecCCCce-EE
Confidence 35678899999999988888887 367789999998431 2233444432 3567899999999996 78
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
+++.-.++.|||+.......+..... .....++++.+||.+..++++.||.|.|||+.+...++.++ +| +.|+
T Consensus 482 vGGeastlsiWDLAapTprikaelts---sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascI 557 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTS---SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCI 557 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCC---cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeE
Confidence 88878899999999654433322211 12267889999999999999999999999999999999998 66 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 294 (351)
.++++|. .|-+|+-|.+||.||+|. .+.+.... ..+.|.++..+|.+ .+++.|-.++.+.+.....
T Consensus 558 dis~dGt-klWTGGlDntvRcWDlre-grqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~sk---------- 623 (705)
T KOG0639|consen 558 DISKDGT-KLWTGGLDNTVRCWDLRE-GRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSK---------- 623 (705)
T ss_pred EecCCCc-eeecCCCccceeehhhhh-hhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCC----------
Confidence 9999998 799999999999999997 43344332 45789999999999 9999999999988877764
Q ss_pred cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.....+.-|+.-|.++.|.+.|+ .+++.+.|+.+..|..+
T Consensus 624 ----------p~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 624 ----------PEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTP 663 (705)
T ss_pred ----------ccceeecccccEEEEEEecccCc-eeeecCchhhhhhccCc
Confidence 45566778999999999999999 68999999999999875
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-24 Score=176.80 Aligned_cols=268 Identities=14% Similarity=0.225 Sum_probs=203.1
Q ss_pred CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018700 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120 (351)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 120 (351)
...+.+|+++.....-.+..... +-.+.+++|+.... |+++. .+.|..+++|.-... .+....+....+.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~-~pg~~s~~w~~~n~-lvvas--~~gdk~~~~~~K~g~-----~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTA-EPGDFSFNWQRRNF-LVVAS--MAGDKVMRIKEKDGK-----TPEVPRVRKLTGD- 80 (673)
T ss_pred CCceEEeecccccCccccccCCC-CCcceeeeccccce-EEEee--cCCceeEEEecccCC-----CCccceeeccccc-
Confidence 46788899887654333222111 23489999987654 44432 578899999985511 1122223333332
Q ss_pred cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018700 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 200 (351)
.-.|++......+ +++++..+.|+|||++. +.......+|...|+++.++-.+.+|++++..|.|.|..+.++
T Consensus 81 -~~~Cv~~~s~S~y-~~sgG~~~~Vkiwdl~~-----kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 81 -NAFCVACASQSLY-EISGGQSGCVKIWDLRA-----KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred -hHHHHhhhhccee-eeccCcCceeeehhhHH-----HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 3445544444453 66668899999999983 3334445678889999999999999999999999999999999
Q ss_pred CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018700 201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (351)
Q Consensus 201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 277 (351)
.....+..+. +.-+.|+|..+++|.+++.+|.|.+||+........-.+.|..+...|+|+|.++.+|++.+.|..|
T Consensus 154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence 8888887553 8899999999999999999999999999864433444568999999999999998999999999999
Q ss_pred EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+||++. ......+. ...+...++|+++|. +|++|...|.|..||++.
T Consensus 234 ~~yD~~s-------------------~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 234 NIYDIRS-------------------QASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRS 281 (673)
T ss_pred EEeeccc-------------------ccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEeccc
Confidence 9999997 44444442 345789999999998 899999999999999974
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=181.24 Aligned_cols=293 Identities=18% Similarity=0.264 Sum_probs=227.6
Q ss_pred eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018700 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw 96 (351)
..|+.+++..|+..+++.. ...|.+.+|++... ++.......|.+.|..+.|.|..+.++++ +.|+.+++|
T Consensus 245 g~VtslSFrtDG~p~las~---~~~G~m~~wDLe~k--kl~~v~~nah~~sv~~~~fl~~epVl~ta----~~DnSlk~~ 315 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASG---RSNGDMAFWDLEKK--KLINVTRNAHYGSVTGATFLPGEPVLVTA----GADNSLKVW 315 (910)
T ss_pred cceeEEEeccCCCeeEEec---cCCceEEEEEcCCC--eeeeeeeccccCCcccceecCCCceEeec----cCCCceeEE
Confidence 4577788888887766643 34577888998874 44555556899999999999977777765 678888877
Q ss_pred EcccccC----------------------------------------------------C--------C------CCCcc
Q 018700 97 QIPELYG----------------------------------------------------Q--------L------NSPQL 110 (351)
Q Consensus 97 ~~~~~~~----------------------------------------------------~--------~------~~~~~ 110 (351)
-.+...+ . . .....
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 6552100 0 0 00000
Q ss_pred eee--------------------------------------eee-----eccccceeEEEecCCCCCcEEEEecCCcEEE
Q 018700 111 ERI--------------------------------------AAL-----DAHVGKINCVLWWSSGRHDKLVSIDEENIFL 147 (351)
Q Consensus 111 ~~~--------------------------------------~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~i 147 (351)
.++ ..+ +.-...+++++.++.|+. .+.++..|.|-+
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF-VFIGYSKGTIDR 474 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce-EEEeccCCeEEE
Confidence 000 001 001256788999999994 666777899999
Q ss_pred EEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE
Q 018700 148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT 226 (351)
Q Consensus 148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~ 226 (351)
|++..+-....+. ..+.|..+|++++...-++.+++++.+|.+.+||...+.....+..++ +.++..+.... +++.
T Consensus 475 fNmQSGi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~ 551 (910)
T KOG1539|consen 475 FNMQSGIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAI 551 (910)
T ss_pred EEcccCeeecccc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhh
Confidence 9999764443332 234678899999999888889999999999999999988888888777 88999988887 8999
Q ss_pred ecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc
Q 018700 227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL 306 (351)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (351)
+.+|=.|+++|..+ .+.++.+.+|...|+.++|||+| ++|++++.|++|++||+.+ +.+
T Consensus 552 ~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt-------------------~~l 610 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPT-------------------GTL 610 (910)
T ss_pred hcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccC-------------------cce
Confidence 99999999999998 67899999999999999999999 9999999999999999999 777
Q ss_pred ceeeccccceEEEEEeCCCCCceEEEeeeC-CeEEEeecC
Q 018700 307 LNSYSDYEDSVYGLAWSSREPWIFASLSYD-GRVVVESVK 345 (351)
Q Consensus 307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~v~vw~~~ 345 (351)
+-.+. -..++.++.|+|+|. +||+...| .-|++|.-.
T Consensus 611 ID~~~-vd~~~~sls~SPngD-~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 611 IDGLL-VDSPCTSLSFSPNGD-FLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eeeEe-cCCcceeeEECCCCC-EEEEEEecCceEEEEEch
Confidence 77664 356789999999999 89999887 779999644
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-23 Score=176.64 Aligned_cols=242 Identities=16% Similarity=0.216 Sum_probs=194.2
Q ss_pred cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEecCCCCCcEEEEec
Q 018700 63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVSID 141 (351)
Q Consensus 63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~ 141 (351)
-.+.+|.+++|+.+.+.|+++ -.+|.|.+|++.. .+-....+.++ ...|.+++|++.++ +++++.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvs----Rt~g~IEiwN~~~--------~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~ 88 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVS----RTDGNIEIWNLSN--------NWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGL 88 (691)
T ss_pred eeccceEEEEEeccCCceeee----ccCCcEEEEccCC--------CceeeEEEecCCCCceeeEEEccCCe--EEeecC
Confidence 346799999999999888875 6899999999983 45555666665 56799999998887 788888
Q ss_pred CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--c--ceeEEEEcC
Q 018700 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--H--AHVRNVDYD 217 (351)
Q Consensus 142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~--~~v~~~~~~ 217 (351)
+|.|.-||+.+.++....... ...|++++.+|.+..++.|+.||.+..++...++...... . +.+.+++|+
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~-----gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSN-----GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred CceEEEEecccCceeEEecCC-----CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 999999999986555443332 2389999999999999999999977777776665433222 1 229999999
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEee--------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCC
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE 289 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 289 (351)
|++. .+++|+.||.|++||... +..+.... ....-|+++.|-.++ .|++|..-|+|.+||...
T Consensus 164 ~~~~-~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~----- 234 (691)
T KOG2048|consen 164 PTGT-KIAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF----- 234 (691)
T ss_pred CCcc-EEEecccCceEEEEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC-----
Confidence 9997 699999999999999987 43343111 122347888887664 899999999999999999
Q ss_pred CCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+.++..+..|...|.+++..+++. .++++|.|+.|..|...+.
T Consensus 235 --------------gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 235 --------------GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred --------------cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCC
Confidence 999999999999999999999988 7999999999988877654
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=169.96 Aligned_cols=280 Identities=15% Similarity=0.211 Sum_probs=198.6
Q ss_pred eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018700 38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD 117 (351)
Q Consensus 38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (351)
..+...+.+|++......+.++.-. ...-.++..- .+.+++++. ..-..+.+|.+.. ........
T Consensus 14 S~d~~~~~~~dl~TGt~~~~ykg~~--~a~~~sl~~l-~~~yllsaq---~~rp~l~vw~i~k---------~~~~~q~~ 78 (476)
T KOG0646|consen 14 SFDPINCIVWDLRTGTSLLQYKGSY--LAQAASLTAL-NNEYLLSAQ---LKRPLLHVWEILK---------KDQVVQYI 78 (476)
T ss_pred CCCCcceeEEecCCCceeEEecCcc--cccchhhhhh-chhheeeec---ccCccccccccCc---------hhhhhhhc
Confidence 3444567777777765544433210 1111122211 135676663 4455899999872 22222333
Q ss_pred ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018700 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 197 (351)
.-.++|.+++-+|+|.+ ++++...+.+++|.+.++...... .+|-..|+++.|+-|+.++++++.||.|.+|++
T Consensus 79 v~Pg~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYF-LLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccccceeeeecCCCceE-EEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 45678999999999994 555558899999999987644433 245669999999999999999999999999987
Q ss_pred cc---------CCcCceeecce---eEEEEcCCCC-CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018700 198 RS---------MGKTNSIEHAH---VRNVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY 264 (351)
Q Consensus 198 ~~---------~~~~~~~~~~~---v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (351)
.. -++...+. .| |+++...+.+ .-.+++++.|.++++||+.. +..+.++. ....+.+++.+|-+
T Consensus 153 ~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred EeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEe-cCCcceeEEEcccc
Confidence 53 12333333 45 8888776652 22799999999999999987 66666665 57889999999999
Q ss_pred CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc--eEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018700 265 DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~vw 342 (351)
+.++.|+.+|.|.+.++...........-.... ..+..+..+.+|.. .|++++.+-||. +|++|+.||.|+||
T Consensus 230 -~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~---~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 230 -RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH---EENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVW 304 (476)
T ss_pred -cEEEecCCcceEEeeehhcCCcccccccccccc---cccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEE
Confidence 999999999999999887643211100000000 12566777889987 999999999999 99999999999999
Q ss_pred ecCc
Q 018700 343 SVKP 346 (351)
Q Consensus 343 ~~~~ 346 (351)
|+.+
T Consensus 305 di~S 308 (476)
T KOG0646|consen 305 DIYS 308 (476)
T ss_pred ecch
Confidence 9865
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=183.11 Aligned_cols=241 Identities=16% Similarity=0.257 Sum_probs=193.5
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID 141 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 141 (351)
.+|...-+.|+|.|+|..|+++ +.|+.|++|+.... .....++..+...|.+++.... .+++++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tc----gsdg~ir~~~~~sd--------~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTC----GSDGDIRKWKTNSD--------EEEPETIDISGELVSSIACYSN---HFLTGSE 74 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEe----cCCCceEEeecCCc--------ccCCchhhccCceeEEEeeccc---ceEEeec
Confidence 5789999999999999977664 89999999997631 1222333337778888876544 2888899
Q ss_pred CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC
Q 018700 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT 218 (351)
Q Consensus 142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~ 218 (351)
+++|.+|.+..+.....+... +-++..++++.+|+++++|+.|-.|++.++........+. +| |.++.|+|
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rf-----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p 148 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARF-----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP 148 (933)
T ss_pred cceEEEeeCCCCCccceeeee-----eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcC
Confidence 999999999876543222221 2389999999999999999999999999999887777777 55 99999999
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcceeEeeC--------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPG--------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 290 (351)
.+. +||+.+-||.|++||+.. +....++.+ ....+..++|+|++ ..++....|+.|++|+...
T Consensus 149 ~~~-fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~------ 219 (933)
T KOG1274|consen 149 KGN-FLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKG------ 219 (933)
T ss_pred CCC-EEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCC------
Confidence 998 899999999999999986 544444432 13557889999998 7777788899999999998
Q ss_pred CCcccccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 291 PSESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++....+.. +...+..++|+|+|. +||+++.||.|.|||+++
T Consensus 220 -------------we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 -------------WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDT 263 (933)
T ss_pred -------------ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEeccc
Confidence 777776643 445589999999999 899999999999999985
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=172.01 Aligned_cols=251 Identities=10% Similarity=0.159 Sum_probs=200.1
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
.+.|+++.|+|..+.|+++ |.|++++||.++. .....++.+.--..+|.+.+|.|+|...+++++....
T Consensus 213 ~~~I~sv~FHp~~plllva----G~d~~lrifqvDG-------k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVA----GLDGTLRIFQVDG-------KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred cCCceEEEecCCCceEEEe----cCCCcEEEEEecC-------ccChhheeeeeccCccceeeecCCCceEEEecccceE
Confidence 3799999999999888886 8999999999982 2334566666678899999999999965777788899
Q ss_pred EEEEEcCCCCCCcccccccccCc-ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCc
Q 018700 145 IFLWSLDCSNKNAQVQSKQSSGM-LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH 222 (351)
Q Consensus 145 v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~ 222 (351)
++.||+.+.+.. ++.... ++ ...+..+..+|++++|+..+..|.|.+.-..+++.+..+.... +..++|+.+++
T Consensus 282 ~ysyDle~ak~~-k~~~~~--g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk- 357 (514)
T KOG2055|consen 282 LYSYDLETAKVT-KLKPPY--GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK- 357 (514)
T ss_pred EEEeeccccccc-cccCCC--CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc-
Confidence 999999864322 221111 11 2357778889999999999999999999999999999998655 99999999998
Q ss_pred EEEEecCCCeEEEEecccCCcceeEeeCCCCce--eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018700 223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300 (351)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (351)
.|++.+.+|.|.+||++. ..+++.+.. .+.| ++++.++++ .|||+|+..|.|.|||..+....
T Consensus 358 ~l~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s------------ 422 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS------------ 422 (514)
T ss_pred EEEEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc------------
Confidence 677778889999999998 467777763 3333 567778999 89999999999999997652111
Q ss_pred ccccccceeeccccceEEEEEeCCCCCceEEEee--eCCeEEEeecCcc
Q 018700 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS--YDGRVVVESVKPF 347 (351)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~~ 347 (351)
...+++.++..-...|+++.|+|+.+ +||.++ .+..+|+-.+++.
T Consensus 423 -~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 423 -TNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred -CCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce
Confidence 12577778877778899999999998 888777 5778999888764
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=5.3e-22 Score=164.17 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=186.0
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v 145 (351)
.-|.|++|.+++.. ++ |.++|.|.||+.. ..+..+....|.+.|.+++...+|. +++++.|..|
T Consensus 247 k~Vl~v~F~engdv-iT----gDS~G~i~Iw~~~---------~~~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki 310 (626)
T KOG2106|consen 247 KFVLCVTFLENGDV-IT----GDSGGNILIWSKG---------TNRISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKI 310 (626)
T ss_pred eEEEEEEEcCCCCE-Ee----ecCCceEEEEeCC---------CceEEeEeeecCCceEEEEEecCcc--EeecCccceE
Confidence 68999999998854 45 4889999999976 4555556669999999999999999 7888999999
Q ss_pred EEEEcCCCCCCcccc------------------------------------cccccCcccceeeeEECCCCCcEEEeecC
Q 018700 146 FLWSLDCSNKNAQVQ------------------------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCE 189 (351)
Q Consensus 146 ~iwd~~~~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 189 (351)
..||-+ -.+...+. .....+|......++.+|+.+.+++++.|
T Consensus 311 ~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 311 ILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred Eecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 999932 11111100 01123566678889999999999999999
Q ss_pred CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018700 190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI 268 (351)
Q Consensus 190 ~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 268 (351)
+.+++|+ ..++..+..... ..|+.|+|.| .++.|...|...+.|.++ ...+..-. ...+++.++|+|+| .+|
T Consensus 390 k~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~-d~~~ls~v~ysp~G-~~l 462 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHT-DNEQLSVVRYSPDG-AFL 462 (626)
T ss_pred ceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEe-cCCceEEEEEcCCC-CEE
Confidence 9999999 445555555444 9999999999 688899999999999987 54444444 48999999999999 999
Q ss_pred EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
|.|+.|+.|+||.+... +...... +.+.++|+.++|++|++ ++.+-+.|-.|..|.
T Consensus 463 Avgs~d~~iyiy~Vs~~------------------g~~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSAN------------------GRKYSRVGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWK 519 (626)
T ss_pred EEecCCCeEEEEEECCC------------------CcEEEEeeeecCceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence 99999999999999862 3322222 33448899999999999 899999999999994
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=163.51 Aligned_cols=255 Identities=14% Similarity=0.157 Sum_probs=185.6
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc---eeeeeee-ccccceeEEEec-------CCCCC
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL---ERIAALD-AHVGKINCVLWW-------SSGRH 134 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~~~~~-~h~~~v~~~~~~-------~~~~~ 134 (351)
.-...+.|+|||..|++. +.|..+++|++.........+.. .....++ .....|...+|- |+..
T Consensus 50 nf~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~- 124 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN- 124 (406)
T ss_pred hhhccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-
Confidence 345578999999999986 79999999999854322221111 1111222 224567777775 3444
Q ss_pred cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc-ccCCc---Cceeecc-
Q 018700 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-RSMGK---TNSIEHA- 209 (351)
Q Consensus 135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~---~~~~~~~- 209 (351)
++++++.+.-|++||.-+++.......-..........+++|+|||..|++|- ...|+++|+ +.|.. ..++..+
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccc
Confidence 46667899999999999876555443332222223567899999999888764 779999999 55542 1222221
Q ss_pred ----e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC-CCeEEEEEcC
Q 018700 210 ----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVS 283 (351)
Q Consensus 210 ----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~ 283 (351)
. +.+++|+|....+++.|+....+-||.-.. ..++..+-+|.+.|+.++|.++| +.|.+|.. |-.|..||++
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeeh
Confidence 1 899999998877899999988888888765 67899999999999999999999 67777765 7799999999
Q ss_pred CCCCCCCCCcccccCCcccccccceeeccccc-eEEE--EEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 284 TSNHDELPSESLVESPNQRANSLLNSYSDYED-SVYG--LAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
. ...++..+..|.. .-.. +...|+++ +|++|+.||.|++||++++
T Consensus 282 ~------------------~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 282 Y------------------SRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred h------------------ccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCC
Confidence 7 2677777777654 2233 45578898 8999999999999999874
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=160.81 Aligned_cols=282 Identities=14% Similarity=0.253 Sum_probs=214.3
Q ss_pred eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018700 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (351)
-..+.+++.+.-+++|. .++.+.+|++..-+ ..+.+.+|-.+|.+++||++|+.|+++ +.|..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc----~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~Llts----S~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC----ANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTS----SRDWSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeec----cCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeee----cCCceeEEEec
Confidence 34466888888899885 47999999998754 346678899999999999999999986 89999999999
Q ss_pred ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC-cccceeeeEEC
Q 018700 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-MLHYLSGGAWD 177 (351)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 177 (351)
. .+.+++.+ ...++|+.+.|.|...+.++++-.+..-.+-++.. ....++.....+ ......+..|.
T Consensus 95 ~---------~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 95 L---------KGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred c---------CCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccccccccccccc
Confidence 8 56677777 46789999999998887778875455556666654 233333332222 12223334689
Q ss_pred CCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc--------cee
Q 018700 178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--------PIQ 246 (351)
Q Consensus 178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~ 246 (351)
+.|+++++|...|.+.++|..+-+++..++... |..+.++..|+ .|+.-+.|..||.|+++.... +.+
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 999999999999999999999998887776333 88999999998 788899999999999873211 111
Q ss_pred EeeC--CCCceeEEEecCCCCCeEEEeeC-CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEe
Q 018700 247 ELPG--HTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAW 322 (351)
Q Consensus 247 ~~~~--~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 322 (351)
.++. ....=.+++|+.+| .|++.++. -..++||.... +.+++.+.+.. .....+.|
T Consensus 242 K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV~w 301 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDVNW 301 (405)
T ss_pred HHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeeccc
Confidence 1110 11223578899999 77776654 55899999998 99999998876 56788999
Q ss_pred CCCCCceEEEeeeCCeEEEeecCc
Q 018700 323 SSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 323 ~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+|-.+ .+++- ..|.|++|....
T Consensus 302 hp~rp-~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 302 HPVRP-IIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccee-eeeec-cCCceEEEEeec
Confidence 99877 67776 689999998753
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-24 Score=196.17 Aligned_cols=254 Identities=18% Similarity=0.308 Sum_probs=188.8
Q ss_pred eeeeCCCCC-ceEEEEeec------CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC---cEEEE
Q 018700 70 DLSSCPFDQ-RIFSTVFST------GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH---DKLVS 139 (351)
Q Consensus 70 ~i~~~~~~~-~l~~~~~~~------~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~~~~ 139 (351)
.++|+|.+. .++++..++ +.+.++.||.+..... ....+++..+ .-...-..++|.+.+.. +++.+
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~---~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDE---SSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCc---cccccccccc-cccccceeeeecccCCCccceeecc
Confidence 568999886 333332222 2344567777653211 1112344333 23456789999998875 24444
Q ss_pred ecCCcEEEEEcCCC-CCCcccccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecc---e-eEE
Q 018700 140 IDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHA---H-VRN 213 (351)
Q Consensus 140 ~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~-v~~ 213 (351)
..||.|.+||.... .............|.+.|..+.|++... .|++|+.||.|.|||+...+........ . |.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 78999999998863 1112222233457888999999999876 7888889999999999986655554211 2 999
Q ss_pred EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC--ceeEEEecCCCCCeEEEeeCCC---eEEEEEcCCCCCC
Q 018700 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHD 288 (351)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~ 288 (351)
++|+..-.++|++++.+|.+.|||+|. ++++..+..|.. .+..++|+|++...|++++.|. .|.+||+|.
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---- 241 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---- 241 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc----
Confidence 999998888999999999999999998 567777765554 4778999999977777777654 799999997
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
...+++++.+|...|.++.|++.+..++++++.|+.|.+|+.++
T Consensus 242 --------------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 242 --------------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred --------------cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 26778888999999999999999866999999999999999876
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.8e-23 Score=174.97 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=198.3
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+.+|.+.|.+|...|.|.+|++ |+.||+|+||.+. ++.++.++ ...+.|.||+|+|.+...+++
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlas----GsdDGtvriWEi~---------TgRcvr~~-~~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLAS----GSDDGTVRIWEIA---------TGRCVRTV-QFDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeee----cCCCCcEEEEEee---------cceEEEEE-eecceeEEEEecCCCCceeEE
Confidence 456799999999999999999988 5899999999999 78888887 456799999999998765666
Q ss_pred EecCCcEEEEEcCCCCCCcc-----ccc---------------------------ccccCcccceeeeEECCCCCcEEEe
Q 018700 139 SIDEENIFLWSLDCSNKNAQ-----VQS---------------------------KQSSGMLHYLSGGAWDPHDVNAVAA 186 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~-----~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~ 186 (351)
.+....+.|.+..-+.+... .+. .....|...|..+.|+..|.||++.
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 66555666665443211100 000 0011244578999999999999988
Q ss_pred ec---CCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018700 187 TC---ESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (351)
Q Consensus 187 ~~---d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 261 (351)
.. ...|.|.++........|...+ +.++.|+|...+ |++++. ..|++||+.. +..++.+.....+|..++.+
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~k-qelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSK-QELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhH-HHHHHHHhcCCeeeeeeeec
Confidence 64 4689999998777666665444 999999999985 444543 5899999987 66777777778899999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018700 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341 (351)
Q Consensus 262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v 341 (351)
|.| .-|+.|+.|+.+..||+.. ..++.+++..|...+++++|++.-+ +|++|+.||.+.|
T Consensus 617 p~G-Dnli~gs~d~k~~WfDldl------------------sskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~V 676 (733)
T KOG0650|consen 617 PNG-DNLILGSYDKKMCWFDLDL------------------SSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIV 676 (733)
T ss_pred CCC-CeEEEecCCCeeEEEEccc------------------CcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEE
Confidence 999 7888899999999999986 2578888999999999999999998 9999999999999
Q ss_pred eec
Q 018700 342 ESV 344 (351)
Q Consensus 342 w~~ 344 (351)
+.-
T Consensus 677 fhg 679 (733)
T KOG0650|consen 677 FHG 679 (733)
T ss_pred Eee
Confidence 863
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4e-23 Score=168.12 Aligned_cols=208 Identities=17% Similarity=0.264 Sum_probs=167.9
Q ss_pred cceeEEEecCC-------CCCcEEEEecCCcEEEEEcCCCCCCcccc----------------cccccCcccceeeeEEC
Q 018700 121 GKINCVLWWSS-------GRHDKLVSIDEENIFLWSLDCSNKNAQVQ----------------SKQSSGMLHYLSGGAWD 177 (351)
Q Consensus 121 ~~v~~~~~~~~-------~~~~~~~~~~d~~v~iwd~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~ 177 (351)
....|++|... |+ +++.+..|..|.|||+.--....... .....+|+..|.+++|+
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 34467777543 33 36666789999999987432211111 11134688889999998
Q ss_pred CCCCc-EEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc
Q 018700 178 PHDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW 254 (351)
Q Consensus 178 ~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 254 (351)
..-+. |++|+.|.+|++||+.++++..++.... |.+++|+|....+|++|+.|+++.+.|.|.+...-..++ ..+.
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~ 331 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGE 331 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccc
Confidence 87554 6678899999999999999998888322 999999999988999999999999999996554444444 4678
Q ss_pred eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018700 255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 334 (351)
|-.++|.|..+..++++..||+|+-+|+|. .++++.+++.|.++|.++++++.-+.++++++
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~------------------~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRN------------------PGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCC------------------CCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence 999999999988999999999999999998 26899999999999999999998888999999
Q ss_pred eCCeEEEeecCccc
Q 018700 335 YDGRVVVESVKPFL 348 (351)
Q Consensus 335 ~dg~v~vw~~~~~~ 348 (351)
.|+.|++|++....
T Consensus 394 ~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDS 407 (463)
T ss_pred ccceEEEEeecCCC
Confidence 99999999987533
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=3.3e-23 Score=169.16 Aligned_cols=219 Identities=14% Similarity=0.175 Sum_probs=170.1
Q ss_pred cceeeeeeeccccceeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC-CcEEEe
Q 018700 109 QLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAA 186 (351)
Q Consensus 109 ~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 186 (351)
........+.+.++|++++|+|... .+++++...|+|-+||+.+.++... .......|..+|.++.|+|.+ ..+++.
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d-~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD-GVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC-ceEEeccCCccccceEecCCChhheeee
Confidence 3445556778999999999999887 5455557789999999963222111 111123567799999999965 458888
Q ss_pred ecCCeEEEEEcccCCcCceeec--ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecC
Q 018700 187 TCESSVQFWDLRSMGKTNSIEH--AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (351)
Q Consensus 187 ~~d~~i~iwd~~~~~~~~~~~~--~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 262 (351)
+.||+|++-|++.......+.. .. +..+.|+.+.+ .++.+..=|...+||+|..+.....+..|...|.+|+++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 9999999999997643332222 22 88899999888 5666777679999999997776777888999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018700 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 342 (351)
..+.+|+|++.|++.+|||++....+ ..++...-.|...|.+..|||++. .|++.+.|..|+||
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K---------------~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGK---------------ASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVF 396 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCC---------------CCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEe
Confidence 99999999999999999999973322 222334457899999999999998 59999999999999
Q ss_pred ecC
Q 018700 343 SVK 345 (351)
Q Consensus 343 ~~~ 345 (351)
|..
T Consensus 397 dss 399 (498)
T KOG4328|consen 397 DSS 399 (498)
T ss_pred ecc
Confidence 984
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.7e-23 Score=159.42 Aligned_cols=213 Identities=16% Similarity=0.272 Sum_probs=161.1
Q ss_pred eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc--cccccccCcccceeeeEECCCCCcEEEee-cC
Q 018700 113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CE 189 (351)
Q Consensus 113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 189 (351)
+..+++|...|++++|+.||++ +++.+.|+.|++|+++....... +......+ ..+.+.|.||-+.+++.. ..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccC
Confidence 3467899999999999999996 66668999999999986322211 11111112 467889999988877654 56
Q ss_pred CeEEEEEcccCC---cC--------ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCce
Q 018700 190 SSVQFWDLRSMG---KT--------NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT 255 (351)
Q Consensus 190 ~~i~iwd~~~~~---~~--------~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 255 (351)
.++++|-+...+ .. ..+...| +..+-....+. ++++++.|..|.+|+++ ++.+..+......-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLLQSIDTNQSSN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cceeeeeccccccc
Confidence 789999876432 11 1122223 55566666666 89999999999999998 77888888777777
Q ss_pred eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018700 256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (351)
Q Consensus 256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (351)
+..+.+|+| +++++++..--|++|.+-........ .-..+..+++|...|..++|+++.. .+++.+.
T Consensus 232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fq-----------ev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSk 298 (420)
T KOG2096|consen 232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQ-----------EVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSK 298 (420)
T ss_pred cceeeCCCC-cEEEEecCCCCceEEEEEeccCcchh-----------hhhhhheeccchhheeeeeeCCCcc-eeEEEec
Confidence 888999999 99999999888999988652221111 1345677899999999999999988 8999999
Q ss_pred CCeEEEeecC
Q 018700 336 DGRVVVESVK 345 (351)
Q Consensus 336 dg~v~vw~~~ 345 (351)
||+.+|||.+
T Consensus 299 DG~wriwdtd 308 (420)
T KOG2096|consen 299 DGKWRIWDTD 308 (420)
T ss_pred CCcEEEeecc
Confidence 9999999975
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-22 Score=166.21 Aligned_cols=218 Identities=16% Similarity=0.210 Sum_probs=178.6
Q ss_pred eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018700 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148 (351)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw 148 (351)
.|++......++++ ||..+.|+|||+. .....+.++.|+..|+++.++....+ +++.+..|.|.|.
T Consensus 83 ~Cv~~~s~S~y~~s----gG~~~~Vkiwdl~---------~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih 148 (673)
T KOG4378|consen 83 FCVACASQSLYEIS----GGQSGCVKIWDLR---------AKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIH 148 (673)
T ss_pred HHHhhhhcceeeec----cCcCceeeehhhH---------HHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEE
Confidence 34444444466766 5899999999998 44566778999999999999998884 5555778999999
Q ss_pred EcCCCCCCcccccccccCcccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEE
Q 018700 149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224 (351)
Q Consensus 149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l 224 (351)
.+.++.....+... ....|.-+.|+|..+.++ +++.+|.|.+||+....+...+...| ...++|+|....+|
T Consensus 149 ~~~t~~~tt~f~~~----sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 149 GTKTKQKTTTFTID----SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred ecccCccccceecC----CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 99976554433321 123677899999888765 56789999999999888888887777 88899999999899
Q ss_pred EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018700 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (351)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
++-+.|..|.+||.+. ......+. -..+.+.++|.++| .+|+.|...|.|..||++. ..
T Consensus 225 vsVG~Dkki~~yD~~s-~~s~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~------------------~k 283 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRS-QASTDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRS------------------TK 283 (673)
T ss_pred EEecccceEEEeeccc-ccccceee-ecCCcceeeecCCc-eEEEeecCCceEEEEeccc------------------CC
Confidence 9999999999999996 55555554 46789999999999 9999999999999999997 37
Q ss_pred ccceeeccccceEEEEEeCCC
Q 018700 305 SLLNSYSDYEDSVYGLAWSSR 325 (351)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~ 325 (351)
.++.+...|...|++++|.|.
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCceEeeecccceeEEEeeec
Confidence 889999999999999999885
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=7.8e-22 Score=154.67 Aligned_cols=281 Identities=17% Similarity=0.242 Sum_probs=204.9
Q ss_pred ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC------e----EEEEeeecCCcceeeeeeC-------CCC
Q 018700 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT------E----LICEGLFSHPNEIWDLSSC-------PFD 77 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~------~----~~~~~~~~h~~~v~~i~~~-------~~~ 77 (351)
+...+..+.++|++..++..+ +++.+.+|.+..+.. . ............|...+|- |+.
T Consensus 48 p~nf~kgckWSPDGSciL~~s----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLS----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred chhhhccceeCCCCceEEeec----ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 445566678999999988754 688999999875321 0 1111112234677777774 445
Q ss_pred CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec--cccc---eeEEEecCCCCCcEEEEecCCcEEEEEcCC
Q 018700 78 QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--HVGK---INCVLWWSSGRHDKLVSIDEENIFLWSLDC 152 (351)
Q Consensus 78 ~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 152 (351)
..+++ ++.+.-|.+||.- +++....++. |.++ ..+++|+|||.. +.++....|+++|+..
T Consensus 124 ~l~a~----ssr~~PIh~wdaf---------tG~lraSy~~ydh~de~taAhsL~Fs~DGeq--lfaGykrcirvFdt~R 188 (406)
T KOG2919|consen 124 NLFAV----SSRDQPIHLWDAF---------TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ--LFAGYKRCIRVFDTSR 188 (406)
T ss_pred ceeee----ccccCceeeeecc---------ccccccchhhhhhHHhhhhheeEEecCCCCe--EeecccceEEEeeccC
Confidence 45555 3799999999987 4555555543 4433 468999999994 5556678999999964
Q ss_pred CCCCccccc---ccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEE
Q 018700 153 SNKNAQVQS---KQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV 225 (351)
Q Consensus 153 ~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~ 225 (351)
..+...... ....+....+.+++|+|... .+++++....+-||.-..+.++..+. +| |+.+.|.++|. .|+
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn-~lf 266 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGN-KLF 266 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcC-eec
Confidence 443333222 21233455789999999766 67788888888888877777776666 55 99999999998 566
Q ss_pred Eec-CCCeEEEEecccCCcceeEeeCCCC-ceeEEEe--cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018700 226 TAA-DESGIHLWDLRMLKAPIQELPGHTH-WTWAVCC--NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ 301 (351)
Q Consensus 226 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (351)
+|. .+..|..||+|....++..+..|.. .-..|.| .|++ ++|++|+.||.|++||+...
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~---------------- 329 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDL---------------- 329 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCC----------------
Confidence 666 4789999999998888988888876 3344544 6888 99999999999999999872
Q ss_pred cccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018700 302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
+..+..+..|...++.++++|--+ ++|+++..
T Consensus 330 --gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 330 --GNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred --CCcccccccccccccceecCcccc-eeeeccCc
Confidence 566777888999999999999877 78777643
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=158.22 Aligned_cols=245 Identities=14% Similarity=0.162 Sum_probs=177.7
Q ss_pred eeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEE
Q 018700 68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL 147 (351)
Q Consensus 68 v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~i 147 (351)
-.++.|++.|.+|+++ ..||.|.|||+. +...-+.+.+|..+|++++||++|+. +++++.|..|.+
T Consensus 26 a~~~~Fs~~G~~lAvG----c~nG~vvI~D~~---------T~~iar~lsaH~~pi~sl~WS~dgr~-LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVG----CANGRVVIYDFD---------TFRIARMLSAHVRPITSLCWSRDGRK-LLTSSRDWSIKL 91 (405)
T ss_pred cceEEeccCcceeeee----ccCCcEEEEEcc---------ccchhhhhhccccceeEEEecCCCCE-eeeecCCceeEE
Confidence 6799999999999886 589999999999 67777889999999999999999995 888899999999
Q ss_pred EEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCC--cCceeecce----eEEEEcCCCC
Q 018700 148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMG--KTNSIEHAH----VRNVDYDTKK 220 (351)
Q Consensus 148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~--~~~~~~~~~----v~~~~~~~~~ 220 (351)
||+..+....++.... +|+...|+|.....+.++ .+..-.+.++..+. .+..-..+. ..+..|.+.|
T Consensus 92 wDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred EeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 9999887655554433 899999999776655544 33334444444321 111111111 4455689999
Q ss_pred CcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018700 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299 (351)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 299 (351)
+ ++++|...|.+.+||..+ .+++..++... ..|..+.++..| +.|+..+.|..||.|+++..-.. ..+.
T Consensus 166 ~-yIitGtsKGkllv~~a~t-~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~-----~r~~-- 235 (405)
T KOG1273|consen 166 K-YIITGTSKGKLLVYDAET-LECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE-----GRDG-- 235 (405)
T ss_pred C-EEEEecCcceEEEEecch-heeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc-----CccC--
Confidence 8 799999999999999998 56777777655 789999999999 99999999999999998741100 0000
Q ss_pred cccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 300 NQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 300 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
..++.+.+.. ....-.++.|+.+|.+++++......++||.-.
T Consensus 236 ---e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 236 ---EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred ---CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 0122222211 112235688999999555555567789999754
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=151.36 Aligned_cols=262 Identities=15% Similarity=0.241 Sum_probs=191.0
Q ss_pred cCCcceeeeeeCC--C-CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC---cE
Q 018700 63 SHPNEIWDLSSCP--F-DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH---DK 136 (351)
Q Consensus 63 ~h~~~v~~i~~~~--~-~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~ 136 (351)
..+-.+.++.|+. + +.+|+.+.+.....+.|.|-.+.++.. ......+ ..|.-+++.+.|.|+... -+
T Consensus 42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----ELVEDAN-FDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred cCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----ceeccCC-CCCCCCccceEecCCccccCcch
Confidence 3456778888873 3 335666544444556788877763211 2222223 378899999999998631 14
Q ss_pred EEEecCCcEEEEEcCCCCCCcc----cccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCc--Cceeecc
Q 018700 137 LVSIDEENIFLWSLDCSNKNAQ----VQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK--TNSIEHA 209 (351)
Q Consensus 137 ~~~~~d~~v~iwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--~~~~~~~ 209 (351)
++++. ..+++|.+...+.... +.......+..+++++.|+.-.. ++.+++-|-+..|||++++.. +.+.-.+
T Consensus 116 LATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 116 LATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 55543 4899999984322211 11122334556899999987554 556677899999999999743 2332234
Q ss_pred e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--CCCceeEEEecCCCCCeEEEeeCCC-eEEEEEcC
Q 018700 210 H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVS 283 (351)
Q Consensus 210 ~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~ 283 (351)
| |..++|...+..+|++.+.||.+|+||+|........++. ...+...++|++..++++|+-..|+ .|.|.|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 5 9999999988889999999999999999985544334443 2467899999999989999887765 69999999
Q ss_pred CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018700 284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS 349 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 349 (351)
. ...++..+.+|.+.|++++|.|..+..++++|+|..+.+||++....
T Consensus 275 ~------------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 275 V------------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred C------------------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 8 26789999999999999999998888999999999999999987544
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5e-21 Score=158.48 Aligned_cols=264 Identities=17% Similarity=0.246 Sum_probs=192.1
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCc-----ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCC
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES-----YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR 133 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 133 (351)
+...+|...|.|++.+|+.-.++++- .++.+ ..+++||.. +...+..+......|+|++|++...
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ-~ag~~g~~~~phvriWdsv---------~L~TL~V~g~f~~GV~~vaFsk~~~ 167 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQ-GAGTSGRPLQPHVRIWDSV---------TLSTLHVIGFFDRGVTCVAFSKING 167 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCc-ccccCCCcCCCeeeecccc---------cceeeeeeccccccceeeeecccCC
Confidence 44678999999999999775555432 22222 359999977 6677778877788999999998543
Q ss_pred CcEEEE---ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee---e
Q 018700 134 HDKLVS---IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI---E 207 (351)
Q Consensus 134 ~~~~~~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~ 207 (351)
..++.. +.+..+.+||...+.+...+... .+.|....|+|.++.++.....+.+.+|+++.+...... +
T Consensus 168 G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s-----ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe 242 (626)
T KOG2106|consen 168 GSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS-----NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE 242 (626)
T ss_pred CceEEEecCCCccccchhhchhhhccCcceec-----cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc
Confidence 223333 55677899999976555544432 237888999999999999999999999999987544332 2
Q ss_pred cc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 208 HA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 208 ~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.. . |.|++|.++|+ +++|.++|.|.||+.+. .+..+....|.+.|.+++.-.+| .|++|+.|..|..||-..
T Consensus 243 k~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 243 KREKKFVLCVTFLENGD--VITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNY 317 (626)
T ss_pred cccceEEEEEEEcCCCC--EEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccc
Confidence 11 2 99999999997 88999999999999987 44555555999999999999998 455599999999999433
Q ss_pred CCCCCCCCcccccCCc--------c-------------cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 285 SNHDELPSESLVESPN--------Q-------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~--------~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
....+.....+.+... . .......+..+|....+.++.+|+.. ++++++.|+.+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN 396 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc
Confidence 2222211111111110 0 01111223357888899999999988 899999999999999
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=159.42 Aligned_cols=246 Identities=13% Similarity=0.167 Sum_probs=182.7
Q ss_pred CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC-CCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS-GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
-+.+.|++||.. +++.+..++++...+..+.|..+ +.+.+++++.||+|++||++...+.........+
T Consensus 47 lSngsv~lyd~~---------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 47 LSNGSVRLYDKG---------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred ecCCeEEEEecc---------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 578899999988 67889999999999999999775 6666777789999999999976655554443322
Q ss_pred cccceeeeEECCCCCcEEEee----cCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018700 167 MLHYLSGGAWDPHDVNAVAAT----CESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (351)
..+..+++.+-.++.+++|+ .+-.|.+||+|..+. +..+...| |+++.|+|..+++|++|+.||.|.+||+
T Consensus 117 -~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 117 -GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred -CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 13667777766677777775 467899999998776 67777677 9999999999999999999999999999
Q ss_pred ccCCc--ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc---ccccC--------------C
Q 018700 239 RMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE---SLVES--------------P 299 (351)
Q Consensus 239 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~--------------~ 299 (351)
..... .+...-.|...|.++.|..++=..|.+-+...+..+|+++.+..+..... ..... +
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 86432 23333357888999999877635688889999999999987653211110 00000 0
Q ss_pred c-------------------------ccccccceeecc-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 300 N-------------------------QRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 300 ~-------------------------~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
. ....+.+..+.+ |..-|+++.|...+. ++.+||.||.+.+|..+
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEEEecC
Confidence 0 011122333444 667788888987777 89999999999999954
No 156
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.3e-21 Score=163.73 Aligned_cols=222 Identities=13% Similarity=0.096 Sum_probs=158.1
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
++.|+.+++||+. +.+.+..+..+. .+.+++|+|++..++++++.++.|++||+.++.....+...
T Consensus 7 ~~~d~~v~~~d~~---------t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---- 72 (300)
T TIGR03866 7 NEKDNTISVIDTA---------TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---- 72 (300)
T ss_pred ecCCCEEEEEECC---------CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC----
Confidence 4789999999987 456667776554 46789999999854455577899999999875433222211
Q ss_pred cccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC-eEEEEecccCCc
Q 018700 167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKA 243 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~ 243 (351)
..+..++|+|+++.+++++ .++.+++||+++.+.+..+.... +..++|+|++. +++++..++ .+.+||.++ ..
T Consensus 73 --~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~-~~ 148 (300)
T TIGR03866 73 --PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKT-YE 148 (300)
T ss_pred --CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCC-Ce
Confidence 1356789999999877654 68999999999877766666444 88999999998 677666654 577889876 44
Q ss_pred ceeEeeCCCCceeEEEecCCCCCeE-EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc-------cc
Q 018700 244 PIQELPGHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-------ED 315 (351)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 315 (351)
.+..+. ....+..++|+|++ .+| +++..++.|++||+++ ++.+..+..+ ..
T Consensus 149 ~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~-------------------~~~~~~~~~~~~~~~~~~~ 207 (300)
T TIGR03866 149 IVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVAT-------------------RKVIKKITFEIPGVHPEAV 207 (300)
T ss_pred EEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCc-------------------ceeeeeeeecccccccccC
Confidence 444333 23345789999999 665 5556799999999987 4444433211 11
Q ss_pred eEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 316 SVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 316 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
....++|+|+++.++++.+.++.+.+||+.+.
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 23568899999954565666788999998753
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=6.8e-22 Score=152.70 Aligned_cols=235 Identities=12% Similarity=0.210 Sum_probs=173.0
Q ss_pred CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec---C----CcEEEEEcCCCCCCc---
Q 018700 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID---E----ENIFLWSLDCSNKNA--- 157 (351)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~---d----~~v~iwd~~~~~~~~--- 157 (351)
-.|+.|.+-+++.+. ..-....+..|.+.|+.++-+|..+.++.+... | ....||.+.......
T Consensus 37 K~dNqVhll~~d~e~------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~ 110 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEG------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS 110 (370)
T ss_pred CCcceeEEEEecCcc------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc
Confidence 356777777776321 112234566788999999999998875544432 1 246799988543331
Q ss_pred --ccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc-Cceeec------ce-eEEEEcCCCCCcEEEEe
Q 018700 158 --QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEH------AH-VRNVDYDTKKKHLLVTA 227 (351)
Q Consensus 158 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~------~~-v~~~~~~~~~~~~l~~~ 227 (351)
.....-...+...+.++.|.|++..+++-. |..|.+|++..+.. +..+.. .+ ..+-+|+|...--.+..
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 111111223344899999999998888766 88999999997765 322221 12 88889999332123445
Q ss_pred cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc
Q 018700 228 ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307 (351)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (351)
..|+++..||+|+..+....-..|...|..+.|+|+.+.+|++++.||.|+|||.+. ...++
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~------------------tk~pv 251 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK------------------TKFPV 251 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC------------------CCccc
Confidence 678999999999865544445589999999999999989999999999999999997 36789
Q ss_pred eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
.++.+|...|+++.|+|....++.++|.|..|.+|.....
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 9999999999999999977669999999999999987653
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-22 Score=169.76 Aligned_cols=257 Identities=19% Similarity=0.231 Sum_probs=198.9
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+..|.+.|..++|.|....|+++ +.|+++++|++.. .........+++.++++|.++|.|++..+++.. ++++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk-~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-~ysg 362 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQK-AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-CYSG 362 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcc-cCCccccceeeeEEEecccCceEEEEecCCceE-EEee
Confidence 567899999999999999999886 7999999999943 223334456889999999999999999999995 7888
Q ss_pred ecCCcEEEEEcCCCCC-----CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec--ce--
Q 018700 140 IDEENIFLWSLDCSNK-----NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-- 210 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~-- 210 (351)
+.||+|+.|++..... ....+.....||...++.+++++....|++++.||+++.|+.....+ .++.. .+
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9999999997762221 12244556778999999999999999999999999999999876655 33332 22
Q ss_pred eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018700 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (351)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 283 (351)
..++++-.......++...-+.-.++++.. ...+..+.. ....+..+.++|.+ .+.+++..|+.|+++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNK 519 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccc
Confidence 667776554432333333334444444443 222333321 11346788899999 899999999999999999
Q ss_pred CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
+ +.++.....|...++++++.|+|. +|++++.|+.+++|++.
T Consensus 520 ~-------------------~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 520 T-------------------GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLD 561 (577)
T ss_pred c-------------------cccchheeeccceecceeecCCCc-eEEeecCCceeehhhcc
Confidence 9 899999999999999999999999 89999999999999985
No 159
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.4e-21 Score=168.71 Aligned_cols=266 Identities=15% Similarity=0.201 Sum_probs=195.1
Q ss_pred eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC-CCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018700 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (351)
.+.+..++++..+++ .+.++.|+.|+--.+ ..+ ..+..+...|.+++... .+|+++ +.+++|.+|.
T Consensus 16 ~t~i~~d~~gefi~t----cgsdg~ir~~~~~sd~e~P---~ti~~~g~~v~~ia~~s--~~f~~~----s~~~tv~~y~ 82 (933)
T KOG1274|consen 16 LTLICYDPDGEFICT----CGSDGDIRKWKTNSDEEEP---ETIDISGELVSSIACYS--NHFLTG----SEQNTVLRYK 82 (933)
T ss_pred eEEEEEcCCCCEEEE----ecCCCceEEeecCCcccCC---chhhccCceeEEEeecc--cceEEe----eccceEEEee
Confidence 455666666663333 357888888875544 221 11222777888887654 366664 7999999999
Q ss_pred cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018700 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (351)
+. .++.-..+...+-++.+++++-+|.. +++++.|-.|++.++.+......+ .+|..+|.++.|+
T Consensus 83 fp---------s~~~~~iL~Rftlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~ 147 (933)
T KOG1274|consen 83 FP---------SGEEDTILARFTLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYD 147 (933)
T ss_pred CC---------CCCccceeeeeeccceEEEEecCCcE-EEeecCceeEEEEeccccchheee-----cccCCceeeeeEc
Confidence 98 44554456666779999999999995 777788999999999865443332 3577799999999
Q ss_pred CCCCcEEEeecCCeEEEEEcccCCcCceeec---------ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018700 178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (351)
Q Consensus 178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (351)
|++++|++.+.||.|++||+.++.....+.. .. +..++|+|++. .++....|+.|++|+... ......
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~-we~~f~ 225 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKG-WELQFK 225 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCC-ceehee
Confidence 9999999999999999999998876655541 12 77899999987 566678889999999886 334444
Q ss_pred ee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018700 248 LP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (351)
Q Consensus 248 ~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (351)
+. .+...+..++|+|.| .|||+++.||.|.|||..+ ... ......|.+++|.|+
T Consensus 226 Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t-------------------~~~----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT-------------------HER----HEFKRAVCCEAWKPN 281 (933)
T ss_pred ecccccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc-------------------chh----ccccceeEEEecCCC
Confidence 43 344559999999999 9999999999999999986 222 122346899999998
Q ss_pred CCceEEEeeeCCeE
Q 018700 326 EPWIFASLSYDGRV 339 (351)
Q Consensus 326 ~~~~l~s~~~dg~v 339 (351)
.. .+-.-...|..
T Consensus 282 ~n-~it~~~~~g~~ 294 (933)
T KOG1274|consen 282 AN-AITLITALGTL 294 (933)
T ss_pred CC-eeEEEeecccc
Confidence 87 34333333433
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=1.3e-21 Score=166.24 Aligned_cols=148 Identities=16% Similarity=0.274 Sum_probs=108.9
Q ss_pred CCCEEEEEEeCCCCCeE-EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 40 EENEVHLLRLSSGGTEL-ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
+.+.+.++-+...+... ....+-+|.+.|.++.|+|-...|+++ ++.|..|+||.+........ ..+-..+.+
T Consensus 53 ~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT---~S~D~~VKiW~lp~g~~q~L---Sape~~~g~ 126 (1012)
T KOG1445|consen 53 EGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLAT---CSRDEPVKIWKLPRGHSQKL---SAPEIDVGG 126 (1012)
T ss_pred CCceEEEEeccccCccccccceeecccceeeccCccccchhhhhc---ccCCCeeEEEecCCCccccc---CCcceeecC
Confidence 34577777777544322 334567899999999999988888887 49999999999983211111 012223434
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 198 (351)
..-.|.++.|+|.... +++++..|.++|||+.+.+.... ..+|...|.+..|+.||..|++++.|..|+|||.+
T Consensus 127 ~~~~vE~l~fHpTaDg-il~s~a~g~v~i~D~stqk~~~e-----l~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 127 GNVIVECLRFHPTADG-ILASGAHGSVYITDISTQKTAVE-----LSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred CceEEEEeecccCcCc-eEEeccCceEEEEEcccCceeec-----ccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 4567899999998876 66666679999999997543332 33677799999999999999999999999988876
Q ss_pred c
Q 018700 199 S 199 (351)
Q Consensus 199 ~ 199 (351)
+
T Consensus 201 a 201 (1012)
T KOG1445|consen 201 A 201 (1012)
T ss_pred c
Confidence 4
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.90 E-value=8.6e-20 Score=155.87 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=178.4
Q ss_pred CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
..++.|.+|++... +.+.......+.+....++++|+++.|+++. ..++.|.+|++.. ......+....
T Consensus 9 ~~~~~I~~~~~~~~-g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~---~~~~~i~~~~~~~------~g~l~~~~~~~- 77 (330)
T PRK11028 9 PESQQIHVWNLNHE-GALTLLQVVDVPGQVQPMVISPDKRHLYVGV---RPEFRVLSYRIAD------DGALTFAAESP- 77 (330)
T ss_pred CCCCCEEEEEECCC-CceeeeeEEecCCCCccEEECCCCCEEEEEE---CCCCcEEEEEECC------CCceEEeeeec-
Confidence 45789999999643 3333333344556788899999999988763 4678899999862 11222233222
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL 197 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~ 197 (351)
.......++++|+++.++++...++.|.+|++++........... .+.....+++++|+++++++++ .++.|.+||+
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 233567899999999644444558999999997533222211110 1112466788999999987765 5699999999
Q ss_pred ccCCcCc-------eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC-C--cceeEeeCC------CCceeEEEe
Q 018700 198 RSMGKTN-------SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML-K--APIQELPGH------THWTWAVCC 260 (351)
Q Consensus 198 ~~~~~~~-------~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~------~~~v~~~~~ 260 (351)
.+...+. ....+. +..++|+|++++++++...++.|.+||+... + +.+..+..+ ......+.+
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 8633221 112223 7889999999954444445899999999742 1 123333221 122346889
Q ss_pred cCCCCCeEEEee-CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018700 261 NPEYDGFILSAG-TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339 (351)
Q Consensus 261 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 339 (351)
+|++ ++++++. .++.|.+|++...... .+.+...... ...+.+.++|+|++++++...++.|
T Consensus 236 ~pdg-~~lyv~~~~~~~I~v~~i~~~~~~---------------~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 236 TPDG-RHLYACDRTASLISVFSVSEDGSV---------------LSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred CCCC-CEEEEecCCCCeEEEEEEeCCCCe---------------EEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcE
Confidence 9999 7777775 4789999999751000 1122222211 2456899999999666666669999
Q ss_pred EEeecC
Q 018700 340 VVESVK 345 (351)
Q Consensus 340 ~vw~~~ 345 (351)
.+|+++
T Consensus 299 ~v~~~~ 304 (330)
T PRK11028 299 SVYEID 304 (330)
T ss_pred EEEEEc
Confidence 999885
No 162
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-20 Score=146.63 Aligned_cols=257 Identities=18% Similarity=0.251 Sum_probs=187.4
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC-eEEEEeeecCCcceeeeee-CCCCCceEEEEeecCCcceEEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSS-CPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~i~~-~~~~~~l~~~~~~~~~d~~i~v 95 (351)
-+..+.++..+.|++.++ .+..+.+|++..+.+ .-.......|.+.|..+.| +|.-..++++| +.|+++.|
T Consensus 15 lihdVs~D~~GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~i 87 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCS----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSI 87 (361)
T ss_pred eeeeeeecccCceeeecc----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceee
Confidence 456677888888988775 578999999765544 4445678899999999999 45444555553 89999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcc--------cccccccC
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQ--------VQSKQSSG 166 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~--------~~~~~~~~ 166 (351)
|.-...........+....++......|+.++|.|....+.+++ +.||.++||+.-....... ........
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 98642222222335667778888889999999999877666666 8899999999765432211 11112234
Q ss_pred cccceeeeEECCC---CCcEEEeecC-----CeEEEEEcccCC----cCceeecce---eEEEEcCCCCC---cEEEEec
Q 018700 167 MLHYLSGGAWDPH---DVNAVAATCE-----SSVQFWDLRSMG----KTNSIEHAH---VRNVDYDTKKK---HLLVTAA 228 (351)
Q Consensus 167 ~~~~v~~~~~~~~---~~~l~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~---v~~~~~~~~~~---~~l~~~~ 228 (351)
+..+..|+.|+|. .++|++|+.+ +.++||...... .+..+. ++ |++++|.|+-. +++++++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEee
Confidence 5668889999974 3567777654 578888765432 223333 33 99999999732 5799999
Q ss_pred CCCeEEEEecccCC-------------------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 229 DESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 229 ~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.|| |+||.++... +.+..+..|...|..+.|+-.| ..|++.+.||+||+|....
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence 999 9999987311 1345567899999999999999 9999999999999998765
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=3.3e-21 Score=154.91 Aligned_cols=232 Identities=17% Similarity=0.268 Sum_probs=177.2
Q ss_pred CCCEEEEEEeCCCCC-eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 40 EENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
..+...++-+..-+. .-....+.+|.++|.+++|+|.+...++. |++|.+|.||.+.+..- ...-.+++..+.+
T Consensus 55 gGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~~l--~~~ltepvv~L~g 129 (472)
T KOG0303|consen 55 GGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIAS---GSEDTKVMVWQIPENGL--TRDLTEPVVELYG 129 (472)
T ss_pred CCcceeecccccccccCCCCCCccCccccccccccCccCCceeec---CCCCceEEEEECCCccc--ccCcccceEEEee
Confidence 334555555444321 11224467999999999999998888886 69999999999985322 1223367888999
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 198 (351)
|...|--++|+|....++++++.|.+|.+|++.++.....+. |...|++++|+.+|..+++++.|..|+|||.+
T Consensus 130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC------CCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence 999999999999998878888999999999999876655432 56699999999999999999999999999999
Q ss_pred cCCcCceeecce----eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEE
Q 018700 199 SMGKTNSIEHAH----VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILS 270 (351)
Q Consensus 199 ~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s 270 (351)
+++.+..-. +| ...+.|-.++. ++.+|. ++..+-+||......++...+ ...+.|.---|.|+...+.++
T Consensus 204 ~~~~v~e~~-~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~ 281 (472)
T KOG0303|consen 204 RGTVVSEGV-AHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC 281 (472)
T ss_pred CCcEeeecc-cccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE
Confidence 998877663 44 66677888887 666654 467899999887666643332 234567767788988344445
Q ss_pred eeCCCeEEEEEcCC
Q 018700 271 AGTDSTVNLWLVST 284 (351)
Q Consensus 271 ~~~dg~i~iwd~~~ 284 (351)
|-.|+.||.|.+..
T Consensus 282 GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 282 GKGDSSIRYFEITN 295 (472)
T ss_pred ecCCcceEEEEecC
Confidence 55699999999987
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=5.2e-21 Score=163.57 Aligned_cols=273 Identities=14% Similarity=0.220 Sum_probs=208.1
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v 95 (351)
..++..+.+.|++..++++ .++.+.+++..+.+ ....+.+|.+.|.+++|+.+|+++++ |+.|..|.+
T Consensus 12 ~hci~d~afkPDGsqL~lA-----Ag~rlliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFAS----G~aDK~VI~ 79 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILA-----AGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFAS----GSADKSVII 79 (1081)
T ss_pred ccchheeEECCCCceEEEe-----cCCEEEEEeCCCcc---cccccccccceEEEEEEccCCceecc----CCCceeEEE
Confidence 3477788899999999876 46788888877754 34678899999999999999999988 589999999
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
|+-. .+-+..+ .|.+.|.|+.|+|-... +++++ =...-+|..... .+.... ....+.+.+
T Consensus 80 W~~k----------lEG~LkY-SH~D~IQCMsFNP~~h~-LasCs-LsdFglWS~~qK----~V~K~k---ss~R~~~Cs 139 (1081)
T KOG1538|consen 80 WTSK----------LEGILKY-SHNDAIQCMSFNPITHQ-LASCS-LSDFGLWSPEQK----SVSKHK---SSSRIICCS 139 (1081)
T ss_pred eccc----------ccceeee-ccCCeeeEeecCchHHH-hhhcc-hhhccccChhhh----hHHhhh---hheeEEEee
Confidence 9854 2333344 79999999999999884 44433 345778887631 111111 123789999
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-----eEEEEcCCCCC----cEEEEecCCCeEEEEecccCCccee
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKK----HLLVTAADESGIHLWDLRMLKAPIQ 246 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (351)
|..||++++.|-.+|+|.+-+- +++....+..+. |.+++|+|... .++++.....++.+|.+. ++.+.
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Ig 216 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIG 216 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeec
Confidence 9999999999999999998754 345545554321 99999998743 367777777888888876 33343
Q ss_pred EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018700 247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (351)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (351)
.-..-.-...|+.+.++| .+++.|+.|+.+++|-.. +-.+.++.....+|+.++..|++
T Consensus 217 k~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~--------------------GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD--------------------GVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred ccccCCCCchhheeccCC-cEEEEccCCCceEEEeec--------------------CeEEeeccccceeEEEEEEccCC
Confidence 222233445789999999 999999999999999765 56777777777899999999999
Q ss_pred CceEEEeeeCCeEEEeecC
Q 018700 327 PWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 327 ~~~l~s~~~dg~v~vw~~~ 345 (351)
+ .++.|..||+|..|++-
T Consensus 276 Q-~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 276 Q-YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred c-eEEEEEccCeeehhhhH
Confidence 9 89999999999999874
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=5.8e-21 Score=153.52 Aligned_cols=251 Identities=10% Similarity=0.155 Sum_probs=181.7
Q ss_pred eCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC
Q 018700 73 SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC 152 (351)
Q Consensus 73 ~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 152 (351)
|+.-+..+++....++..|...+--+..... -....-.+.+|+++|..++|+|.+...+++++.|.+|.||.+..
T Consensus 39 fcavNPkfiAvi~easgGgaf~ViPl~k~Gr-----~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe 113 (472)
T KOG0303|consen 39 FCAVNPKFVAVIIEASGGGAFLVIPLVKTGR-----MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPE 113 (472)
T ss_pred ccccCCceEEEEEecCCCcceeecccccccc-----cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCC
Confidence 3444555555554555555666655542110 01122346799999999999999887566669999999999987
Q ss_pred CCCCcccc--cccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEec
Q 018700 153 SNKNAQVQ--SKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA 228 (351)
Q Consensus 153 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~ 228 (351)
+....... .....+|...|.-++|+|... .|++++.|..|.+|++.+++.+.++.+.. |.++.|+.+|. ++++.+
T Consensus 114 ~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~Ttc 192 (472)
T KOG0303|consen 114 NGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTC 192 (472)
T ss_pred cccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeec
Confidence 65544443 334678999999999999754 57788899999999999999888887444 99999999998 899999
Q ss_pred CCCeEEEEecccCCcceeEeeCCCCc-eeEEEecCCCCCeEEEee---CCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018700 229 DESGIHLWDLRMLKAPIQELPGHTHW-TWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (351)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
.|..|||||.|+ +..+.+-.+|.+. -..+.|-.++ .++-||- .+.++-+||...... .
T Consensus 193 kDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~e----------------P 254 (472)
T KOG0303|consen 193 KDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEE----------------P 254 (472)
T ss_pred ccceeEEEcCCC-CcEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccC----------------c
Confidence 999999999998 7677777777743 4566788888 6555553 377899999876210 2
Q ss_pred ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
-.+..+.. ++.|.---|.++.+-+.++|-.|+.||.|.+....
T Consensus 255 ~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 255 IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 22333433 34466666888888444566689999999987544
No 166
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=168.58 Aligned_cols=244 Identities=14% Similarity=0.188 Sum_probs=191.5
Q ss_pred eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCcceEEEEE
Q 018700 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYGAAIWQ 97 (351)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d~~i~vw~ 97 (351)
..+..+|+.+-++.|. ..+.++++++..... ...+..|+.+|.|+.|+.- +..|++. ++.|..|.|||
T Consensus 463 R~~~vSp~gqhLAsGD----r~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLAS---asrdRlIHV~D 532 (1080)
T KOG1408|consen 463 RALAVSPDGQHLASGD----RGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLAS---ASRDRLIHVYD 532 (1080)
T ss_pred EEEEECCCcceecccC----ccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhh---ccCCceEEEEe
Confidence 3456677888887764 457888888877542 2445689999999999852 3344443 48999999999
Q ss_pred cccccCCCCCCcceeeeeeeccccceeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018700 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (351)
+.. ...++.++.+|...|+++.|...|- ..+++++.|..|.+--..+.............--...+++++.
T Consensus 533 v~r--------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 533 VKR--------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred ccc--------ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 984 5678889999999999999988772 2366668887765433322111111111111112337999999
Q ss_pred CCCCCcEEEeecCCeEEEEEcccCCcCceeecce-----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC
Q 018700 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH 251 (351)
Q Consensus 177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (351)
.|..+++++++.|..|+|||+++++....|+..+ ...+...|.|- ++++.+.|.++.++|.-+ ++++.++.+|
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~s-gEcvA~m~GH 682 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVS-GECVAQMTGH 682 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEecc-chhhhhhcCc
Confidence 9999999999999999999999999999998544 77889999998 799999999999999998 8899999999
Q ss_pred CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
...|+.+.|.+|- +.|++.+.||+|.+|.+..
T Consensus 683 sE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccc-hhheeecCCceEEEEECch
Confidence 9999999999999 9999999999999998764
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=1.5e-20 Score=164.57 Aligned_cols=228 Identities=18% Similarity=0.238 Sum_probs=176.0
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC-cccccccccCccc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN-AQVQSKQSSGMLH 169 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~ 169 (351)
+.+.||++.. ...+...+ .-...|+|+.|+|....+++.|..+|+|.+||+..+... ..........|..
T Consensus 222 ~~~~vW~~~~--------p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~ 292 (555)
T KOG1587|consen 222 GVLLVWSLKN--------PNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE 292 (555)
T ss_pred ceEEEEecCC--------CCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc
Confidence 4789999983 23444455 456789999999999987777788999999999976553 3334444556888
Q ss_pred ceeeeEECCCCCc--EEEeecCCeEEEEEcccCCcCc------eee-------cce-eEEEEcCCCCCcEEEEecCCCeE
Q 018700 170 YLSGGAWDPHDVN--AVAATCESSVQFWDLRSMGKTN------SIE-------HAH-VRNVDYDTKKKHLLVTAADESGI 233 (351)
Q Consensus 170 ~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~------~~~-------~~~-v~~~~~~~~~~~~l~~~~~dg~i 233 (351)
++..+.|..+... +++++.||.|..|+++.-.... ... ... +++++|.+..++.+++|+++|.|
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 9999999765544 9999999999999987533211 111 111 89999999999899999999998
Q ss_pred EEEeccc---CC----cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC-CCCCCCCCCcccccCCcccccc
Q 018700 234 HLWDLRM---LK----APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS-TSNHDELPSESLVESPNQRANS 305 (351)
Q Consensus 234 ~i~d~~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 305 (351)
.--+... .. +....+..|.++|..+.++|-+...+++++ |.+++||... . ..
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-------------------~~ 432 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-------------------AS 432 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-------------------CC
Confidence 8733322 11 224455678899999999999966666666 9999999988 4 67
Q ss_pred cceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
++..+..+...|++++|||..+.+|+++..||.|.+||+...
T Consensus 433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 777888888889999999999889999999999999998643
No 168
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.1e-20 Score=160.54 Aligned_cols=258 Identities=15% Similarity=0.187 Sum_probs=180.7
Q ss_pred eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018700 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw 96 (351)
.++-++.+-+...+|+- ...+..+++|++....- .-.....+|...|.+++|.|.++.++++ |+.||.|.||
T Consensus 101 nAifDl~wapge~~lVs----asGDsT~r~Wdvk~s~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~t---GgRDg~illW 172 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVS----ASGDSTIRPWDVKTSRL-VGGRLNLGHTGSVKSECFMPTNPAVFCT---GGRDGEILLW 172 (720)
T ss_pred ceeEeeccCCCceeEEE----ccCCceeeeeeecccee-ecceeecccccccchhhhccCCCcceee---ccCCCcEEEE
Confidence 34555666664444443 23567888888876431 1123478999999999999999999998 7999999999
Q ss_pred EcccccC---------------C---CCCCcceeeeeeeccccceeE---EEecCCCCCcEEEEe-cCCcEEEEEcCCCC
Q 018700 97 QIPELYG---------------Q---LNSPQLERIAALDAHVGKINC---VLWWSSGRHDKLVSI-DEENIFLWSLDCSN 154 (351)
Q Consensus 97 ~~~~~~~---------------~---~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~ 154 (351)
|+....- . ...+.-+.+..-..|...|.+ +.+..|... +++++ .|+.|+|||+.+..
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeecccc
Confidence 9974320 0 111111222233345555555 555666663 55554 59999999999644
Q ss_pred CCccccccc---ccCc---ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc--Cceeecce-----eEEEEcCCCCC
Q 018700 155 KNAQVQSKQ---SSGM---LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKKK 221 (351)
Q Consensus 155 ~~~~~~~~~---~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-----v~~~~~~~~~~ 221 (351)
......... ..-| ...+.++.....|.+|++.+.|+.|++|++.+-.. +..+. ++ -..-..+|++.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDC 330 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCc
Confidence 322211111 1111 33577788888899999999999999999986432 22222 22 22345789998
Q ss_pred cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
.+++|+.|...++|.+.++..+...+.+|...|++++|.|..-.-+++++.|..+++|++..+
T Consensus 331 -~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 331 -SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 799999999999999999888889999999999999999877667888899999999999654
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.8e-20 Score=158.26 Aligned_cols=296 Identities=17% Similarity=0.263 Sum_probs=206.1
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCc-eEEEEeecCCcceEE
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR-IFSTVFSTGESYGAA 94 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~~~~~~~~~d~~i~ 94 (351)
...+..++.++.+..++-|. .++.+++|.+-... +.......+.|.|++|+|.+.. +++++ ....+.
T Consensus 400 tg~Vr~iSvdp~G~wlasGs----dDGtvriWEi~TgR----cvr~~~~d~~I~~vaw~P~~~~~vLAvA----~~~~~~ 467 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGS----DDGTVRIWEIATGR----CVRTVQFDSEIRSVAWNPLSDLCVLAVA----VGECVL 467 (733)
T ss_pred CCeEEEEEecCCcceeeecC----CCCcEEEEEeecce----EEEEEeecceeEEEEecCCCCceeEEEE----ecCceE
Confidence 34455666777777777764 68999999988742 2223345679999999997654 22221 111233
Q ss_pred EEEccc-----------ccCCC---CCC--------------cceeeeeeeccccceeEEEecCCCCCcEEEE--ecCCc
Q 018700 95 IWQIPE-----------LYGQL---NSP--------------QLERIAALDAHVGKINCVLWWSSGRHDKLVS--IDEEN 144 (351)
Q Consensus 95 vw~~~~-----------~~~~~---~~~--------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~--~~d~~ 144 (351)
|-+-.- ..... ..+ ...-+...-.|...|..+.|+..|.++..+. +....
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 322110 00000 000 0011233346888999999999999743333 34578
Q ss_pred EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCc
Q 018700 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKH 222 (351)
Q Consensus 145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~ 222 (351)
|.|+++........+. .. ...+.++.|+|...+|++++ ...|++||+..+..+..+..+. |..++.+|.|.+
T Consensus 548 VliHQLSK~~sQ~PF~--ks---kG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFR--KS---KGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred EEEEecccccccCchh--hc---CCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 9999998543322221 11 23789999999999888877 4579999999877777766454 999999999995
Q ss_pred EEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018700 223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR 302 (351)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (351)
++.|+.|+.+..||+....++.+++.-|...+++|+|++.- .+|++|+.||++.||--.....-. +..
T Consensus 622 -li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~----------qnp 689 (733)
T KOG0650|consen 622 -LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLL----------QNP 689 (733)
T ss_pred -EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhh----------cCC
Confidence 66799999999999998778999999999999999999999 999999999999998543310000 000
Q ss_pred ccccceeeccccce----EEEEEeCCCCCceEEEeeeCCeEEEe
Q 018700 303 ANSLLNSYSDYEDS----VYGLAWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 303 ~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~~dg~v~vw 342 (351)
.--++..+.+|... |.++.|+|..+| |++++.||+|++|
T Consensus 690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred ceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 02345667788765 889999999995 7788889999998
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=1.3e-20 Score=152.03 Aligned_cols=252 Identities=20% Similarity=0.287 Sum_probs=171.0
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCC
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEE 143 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~ 143 (351)
..+|..+.|.++....+++ +|.|..|++|.+............+.+..+..|...|+++.|+|+|. ++++ +++|
T Consensus 13 ~~pv~s~dfq~n~~~~laT---~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLAT---AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceec---ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCc
Confidence 3688899999887734444 48999999999985544433345667788899999999999999999 5555 7889
Q ss_pred cEEEEEcCCC------C-----CCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--
Q 018700 144 NIFLWSLDCS------N-----KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-- 210 (351)
Q Consensus 144 ~v~iwd~~~~------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 210 (351)
.|.+|....- . +..........+|...++.++|+|++.++++++.|+.+++||+..++....+. .|
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~ 166 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEH 166 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccc
Confidence 9999987621 1 11112223345688899999999999999999999999999999887655544 22
Q ss_pred -eEEEEcCCCCCcEEEEecCCCeE--------------------------------------------------------
Q 018700 211 -VRNVDYDTKKKHLLVTAADESGI-------------------------------------------------------- 233 (351)
Q Consensus 211 -v~~~~~~~~~~~~l~~~~~dg~i-------------------------------------------------------- 233 (351)
+..++|.|-++ ++++-+.|...
T Consensus 167 yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 167 YVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 55555555554 34444433332
Q ss_pred ------------------EEEecccCCcceeEeeCCCCceeEEEecC------------------CCCCeEEEeeCCCeE
Q 018700 234 ------------------HLWDLRMLKAPIQELPGHTHWTWAVCCNP------------------EYDGFILSAGTDSTV 277 (351)
Q Consensus 234 ------------------~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~~l~s~~~dg~i 277 (351)
++|+-....+|...+.....++..+.|+| .+ ..+|.++. ..|
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfaiAt~-~sv 323 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAIATK-NSV 323 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEEeec-ceE
Confidence 33333333334444444444444455544 11 34445554 468
Q ss_pred EEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.+||.+. ..++... .-|-..|++++|+++|. .++..+.||...+-.++
T Consensus 324 yvydtq~-------------------~~P~~~v~nihy~~iTDiaws~dg~-~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 324 YVYDTQT-------------------LEPLAVVDNIHYSAITDIAWSDDGS-VLLVSSTDGFCSLVTFE 372 (434)
T ss_pred EEecccc-------------------ccceEEEeeeeeeeecceeecCCCc-EEEEeccCCceEEEEEc
Confidence 8888887 5555554 34888999999999999 78888899976665443
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.2e-20 Score=148.27 Aligned_cols=267 Identities=14% Similarity=0.168 Sum_probs=191.5
Q ss_pred CCEEEEEEeCCCCCeEEEEe-e-ecCCcceeeeeeCCC----CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee
Q 018700 41 ENEVHLLRLSSGGTELICEG-L-FSHPNEIWDLSSCPF----DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA 114 (351)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~-~-~~h~~~v~~i~~~~~----~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 114 (351)
.+.+.++....+..-...+. . ..|+..-..++|+-+ +..+++ +|.-|.|+|.|+. +.+...
T Consensus 63 ~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~----~G~~GvIrVid~~---------~~~~~~ 129 (385)
T KOG1034|consen 63 GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA----GGYLGVIRVIDVV---------SGQCSK 129 (385)
T ss_pred CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe----ecceeEEEEEecc---------hhhhcc
Confidence 46777777776653222222 1 237777888888643 334444 4789999999998 778888
Q ss_pred eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018700 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (351)
Q Consensus 115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (351)
.+.+|...|..+.+.|+...++++++.|..|++|++++.. .........+|...|.++.|++++.++++++.|..+++
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL 207 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence 9999999999999999998888888999999999999643 33344556789999999999999999999999999999
Q ss_pred EEcccCCcCceeec---------------------------ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018700 195 WDLRSMGKTNSIEH---------------------------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (351)
Q Consensus 195 wd~~~~~~~~~~~~---------------------------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (351)
|++...+....++. -| |-|+.|- |. ++++-+-++.|..|...+.++.
T Consensus 208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhh
Confidence 99984432111110 01 4444443 44 6777777789999987322222
Q ss_pred -------------eeEeeCCCCceeEEE--ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee
Q 018700 245 -------------IQELPGHTHWTWAVC--CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS 309 (351)
Q Consensus 245 -------------~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (351)
+.++.-....|+-+. |+|.+ ..||.|...|.|.+||++...+. ...+
T Consensus 285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~-----------------~~tt 346 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPP-----------------KCTT 346 (385)
T ss_pred hhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCc-----------------cCce
Confidence 223333334455554 56777 89999999999999999972211 1112
Q ss_pred e--ccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 310 Y--SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 310 ~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
+ ......|+..+|+.|+. +|+...+|++|.-||-
T Consensus 347 l~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 2 22345799999999999 8888899999999984
No 172
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=3.3e-20 Score=162.53 Aligned_cols=277 Identities=14% Similarity=0.211 Sum_probs=199.5
Q ss_pred EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018700 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (351)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 122 (351)
.+++|++..... ......-+..|.++.|+|....++++ |..+|.|.+||+....... ....-.....|..+
T Consensus 223 ~~~vW~~~~p~~---Pe~~~~~~s~v~~~~f~p~~p~ll~g---G~y~GqV~lWD~~~~~~~~---~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 223 VLLVWSLKNPNT---PELVLESPSEVTCLKFCPFDPNLLAG---GCYNGQVVLWDLRKGSDTP---PSGLSALEVSHSEP 293 (555)
T ss_pred eEEEEecCCCCC---ceEEEecCCceeEEEeccCCcceEEe---eccCceEEEEEccCCCCCC---CcccccccccCCcC
Confidence 577788877633 23344567899999999999999887 6899999999998421110 01111223468999
Q ss_pred eeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCccccccccc-------CcccceeeeEECCCCCc-EEEeecCCeEE
Q 018700 123 INCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-------GMLHYLSGGAWDPHDVN-AVAATCESSVQ 193 (351)
Q Consensus 123 v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~ 193 (351)
|+.+.|..+.. .-+++++.||.|..|+++.............. .....+++++|.+.... +++|+.+|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 99999976432 22666688999999998754332222221111 11236888999886554 77788889987
Q ss_pred EEEcccCCcCc----eee---cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018700 194 FWDLRSMGKTN----SIE---HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE 263 (351)
Q Consensus 194 iwd~~~~~~~~----~~~---~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (351)
--+....+... ... ..| |.++.++|-+..++.+++ |.+++||.......|+..+..+...+++++|||.
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 73333222111 111 122 999999999986666666 9999999988336788888888888999999999
Q ss_pred CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 264 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
.+.+|+++..||.|.+||+.... ..++.+.+.+....+.+.|+++|+ +++.|...|.+.+|+
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~-----------------~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDD-----------------EEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILK 514 (555)
T ss_pred CceEEEEEcCCCceehhhhhccc-----------------cCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEE
Confidence 98999999999999999998621 345555555566678889999998 999999999999999
Q ss_pred cCcc
Q 018700 344 VKPF 347 (351)
Q Consensus 344 ~~~~ 347 (351)
+.+.
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 9754
No 173
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=5e-20 Score=158.00 Aligned_cols=275 Identities=14% Similarity=0.196 Sum_probs=201.1
Q ss_pred CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018700 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120 (351)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 120 (351)
.+..++|.-.+.........+.||.+.|.+++|.|.|++|+++ |.|.+-||+---. . ......+..-+.|.
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv----s~DQTTRlFa~wg---~--q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV----SLDQTTRLFARWG---R--QQEWHEIARPQIHG 407 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe----ccccceeeecccc---c--ccceeeeccccccc
Confidence 4556666622222234446678999999999999999999997 7999999886431 0 11245555566788
Q ss_pred cceeEEEecCCCCCcEEEEecCCcEEEEEcCCC--------------C-----------------C-Cc-----------
Q 018700 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS--------------N-----------------K-NA----------- 157 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~--------------~-----------------~-~~----------- 157 (351)
..++|+++-+... .++.+.+...+++|+.... + + ..
T Consensus 408 yDl~c~~~vn~~~-~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 408 YDLTCLSFVNEDL-QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred ccceeeehccCCc-eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 8999999988532 2666677788899986420 0 0 00
Q ss_pred ---c---------cc----------------cccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEEcccCCcCc
Q 018700 158 ---Q---------VQ----------------SKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRSMGKTN 204 (351)
Q Consensus 158 ---~---------~~----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~ 204 (351)
+ +. .....||-..|++++.+|+++.+++++. ...|++|+..+-....
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~ 566 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ 566 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh
Confidence 0 00 0112367778999999999999998874 3578999998887777
Q ss_pred eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc---eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018700 205 SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278 (351)
Q Consensus 205 ~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 278 (351)
.+. .| |+.++|+||++ +|++.+.|.++.+|........ ....+.|+.-|....|+|++ .+++|++.|.+|+
T Consensus 567 ~L~-~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 567 ELE-GHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVK 643 (764)
T ss_pred eec-ccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-ceeEEecCCceEE
Confidence 676 66 99999999999 7889999999999998643222 23367899999999999999 9999999999999
Q ss_pred EEEcCCCCCCCCCCcccccCCcccccccce--eeccccceEEEEEeCCC----CCceEEEeeeCCeEEEeecC
Q 018700 279 LWLVSTSNHDELPSESLVESPNQRANSLLN--SYSDYEDSVYGLAWSSR----EPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~v~vw~~~ 345 (351)
+|...... .+.+. ....+...|+.++|.|- ...+++.|-..|.|.+|..+
T Consensus 644 VW~~~~~~-----------------d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 644 VWEEPDLR-----------------DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeccCch-----------------hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99988611 02222 23456788999999772 22367788899999999965
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=151.77 Aligned_cols=278 Identities=13% Similarity=0.150 Sum_probs=196.5
Q ss_pred CeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCC
Q 018700 54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSG 132 (351)
Q Consensus 54 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 132 (351)
.++..+.+.+|.+.|++|.|+.++++|++ ||.|..+++|++++.--. ...+++.... .|...|.|++|...+
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~S----GGDD~~~~~W~~de~~~~---k~~KPI~~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLAS----GGDDMHGRVWNVDELMVR---KTPKPIGVMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEee----cCCcceeeeechHHHHhh---cCCCCceeccCccccceEEEEEccCC
Confidence 34555678899999999999999988888 589999999999742111 1224444443 456899999999887
Q ss_pred CCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecce-
Q 018700 133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH- 210 (351)
Q Consensus 133 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~- 210 (351)
.. ++++..+++|.+.|+.+.+.+..... ......|+.+..+|..+.+++.+.++.|.+||.+..+ ....+-.+.
T Consensus 118 ~~-~~SG~~~~~VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 118 RF-LYSGERWGTVIKHDIETKQSIYVANE---NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred ee-EecCCCcceeEeeecccceeeeeecc---cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 73 66678899999999997543332222 2234489999999999999999999999999999765 333332222
Q ss_pred ---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE----------------------------------------
Q 018700 211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE---------------------------------------- 247 (351)
Q Consensus 211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------------- 247 (351)
...+.|+|..+.+|++.++.+-+.+||.|.+..++..
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 8899999999989999999999999999864322111
Q ss_pred -------ee-CCC-------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC--CCcc-cccCC-cccccccce
Q 018700 248 -------LP-GHT-------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL--PSES-LVESP-NQRANSLLN 308 (351)
Q Consensus 248 -------~~-~~~-------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~ 308 (351)
++ .|. ..+.+++|..+ ..+++|+.+-.|++|.+........ +++. ....| .......+.
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 00 011 12344555544 4589999999999998865322111 1111 00111 111234566
Q ss_pred eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.+++|..-++.+.|+|... +|++.+..+.+++|.--
T Consensus 352 VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEecccccccceeecCCcc-eEeccchhhheeccccc
Confidence 7899999999999999876 89999999999999754
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.3e-20 Score=148.05 Aligned_cols=262 Identities=15% Similarity=0.239 Sum_probs=178.3
Q ss_pred CCcceeeeccccce--eEeeeecCCCCcceEEEeeeee------------CCCCEEEEEEeCCCCCeEEEEeeecCCcce
Q 018700 3 GGSSGIGYGLKYQA--RCISDVKADTDHTSFLTGTLSL------------KEENEVHLLRLSSGGTELICEGLFSHPNEI 68 (351)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v 68 (351)
||....+|..+.+. |.++....+.....|+..+... +..+.|+++++.. ......+.+|...|
T Consensus 62 G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~---~~~~~~~~ghG~sI 138 (385)
T KOG1034|consen 62 GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS---GQCSKNYRGHGGSI 138 (385)
T ss_pred CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch---hhhccceeccCccc
Confidence 55556777777655 5555443321112222222111 2335566666554 34567889999999
Q ss_pred eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee---eccccceeEEEecCCCCCcEEEEecCCcE
Q 018700 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL---DAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (351)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~d~~v 145 (351)
+.|.|+|+...|+.+ ++.|..|++|+++ +..++..+ .+|.+.|.++.|++++.+ +++++.|.++
T Consensus 139 Neik~~p~~~qlvls---~SkD~svRlwnI~---------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~-i~ScGmDhsl 205 (385)
T KOG1034|consen 139 NEIKFHPDRPQLVLS---ASKDHSVRLWNIQ---------TDVCVAVFGGVEGHRDEVLSVDFSLDGDR-IASCGMDHSL 205 (385)
T ss_pred hhhhcCCCCCcEEEE---ecCCceEEEEecc---------CCeEEEEecccccccCcEEEEEEcCCCCe-eeccCCcceE
Confidence 999999999887776 4899999999999 56777665 579999999999999994 6666899999
Q ss_pred EEEEcCCCCCCcccc---------------------cc--cccCcccceeeeEECCCCCcEEEeecCCeEEEEEc-ccCC
Q 018700 146 FLWSLDCSNKNAQVQ---------------------SK--QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-RSMG 201 (351)
Q Consensus 146 ~iwd~~~~~~~~~~~---------------------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~ 201 (351)
++|++...+-...+. .. ...-|...|-|+.|- |+++++-+.++.|..|.. +-++
T Consensus 206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e 283 (385)
T KOG1034|consen 206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEE 283 (385)
T ss_pred EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhh
Confidence 999998422110000 00 112355667777775 578888888999999987 2222
Q ss_pred cCcee-------------ecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce-eEee--CCCCceeEEEec
Q 018700 202 KTNSI-------------EHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI-QELP--GHTHWTWAVCCN 261 (351)
Q Consensus 202 ~~~~~-------------~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~--~~~~~v~~~~~~ 261 (351)
....+ ..+. ....+|+|-++ +||.|...|.|.+||++....+. .++. .....|...+|+
T Consensus 284 ~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS 362 (385)
T KOG1034|consen 284 SIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS 362 (385)
T ss_pred hhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec
Confidence 21111 1111 33456678887 89999999999999999744322 2222 123578999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEcCC
Q 018700 262 PEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 262 ~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.++ .+|+....|++|.-||..+
T Consensus 363 ~dg-s~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 363 RDG-SILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ccC-cEEEEEeCCCcEEEEEeec
Confidence 999 9999999999999998753
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=9.9e-21 Score=144.49 Aligned_cols=246 Identities=15% Similarity=0.151 Sum_probs=179.4
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEE
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
+.+|.+.|+++.|..+++ |++ |...|.|.+|.+. +.+....++ .|...|+.+.--|++. +.+-
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~s----g~~~G~V~~w~lq---------t~r~~~~~r~~g~~~it~lq~~p~d~--l~tq 73 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMS----GLSVGIVKMWVLQ---------TERDLPLIRLFGRLFITNLQSIPNDS--LDTQ 73 (323)
T ss_pred eccccchheehhhccchh-hhc----ccccceEEEEEee---------cCccchhhhhhccceeeceeecCCcc--hhhc
Confidence 348999999999988765 666 4788999999998 455666666 5678899999999866 6666
Q ss_pred ecCCcEEEEEcCCCCC-----------------------Cc-cccccc------------------------ccCcccce
Q 018700 140 IDEENIFLWSLDCSNK-----------------------NA-QVQSKQ------------------------SSGMLHYL 171 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~-----------------------~~-~~~~~~------------------------~~~~~~~v 171 (351)
+.|..+.+|++..... .. +....+ ..+....+
T Consensus 74 gRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 8999999999875110 00 000000 00011234
Q ss_pred eeeEECC-CCC--cEEEeecCCeEEEEEcccCCcCceeec---------ce---eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018700 172 SGGAWDP-HDV--NAVAATCESSVQFWDLRSMGKTNSIEH---------AH---VRNVDYDTKKKHLLVTAADESGIHLW 236 (351)
Q Consensus 172 ~~~~~~~-~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~ 236 (351)
.+..|.- ++. .+++|-.+|.+.+||+.++..+..++. .| +.++.+.+.-. .=++|+.+..+..|
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMY 232 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceee
Confidence 4444322 222 355667899999999998743333321 12 88888876654 34667778889999
Q ss_pred ecccCCc---ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018700 237 DLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY 313 (351)
Q Consensus 237 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
.+..... .-.++....-.|..+..-||+ +.+||++.|+.||+|..++ ..++..++.|
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrt-------------------l~pLAVLkyH 292 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRT-------------------LNPLAVLKYH 292 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEecc-------------------CCchhhhhhh
Confidence 8875321 122233345678999999999 9999999999999999999 8999999999
Q ss_pred cceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 314 EDSVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
...|++++|+|+.+ ++|+++.|++|.+|++
T Consensus 293 sagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 99999999999987 9999999999999986
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.4e-19 Score=133.23 Aligned_cols=242 Identities=14% Similarity=0.214 Sum_probs=172.7
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc-eeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
..|.+-+++|.+++|+++ ..+|.|.+..+.+.......+.+ ..+...++|+++|..++|..+ ++.++.||.
T Consensus 11 ~tvf~qa~sp~~~~l~ag----n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~gdG~ 82 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAG----NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGGDGL 82 (325)
T ss_pred HHHHHHhhCCcceEEEEe----cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeeccCce
Confidence 356677899999998884 89999999999865433333333 345556899999999999833 444555799
Q ss_pred EEEEEcCCCCCC---ccccccccc-----CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEE
Q 018700 145 IFLWSLDCSNKN---AQVQSKQSS-----GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN 213 (351)
Q Consensus 145 v~iwd~~~~~~~---~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~ 213 (351)
|+-|..+...+. ..+.....+ -....|+++...|..+.++.++.|+.++-||+++|+..+.+. +| +.+
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~ 161 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHS 161 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeee
Confidence 999987743321 111111111 112368999999999999998899999999999999888888 77 888
Q ss_pred EEc-CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC----------CCceeEEEecCCCCCeEEEeeCCCeEEEEEc
Q 018700 214 VDY-DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH----------THWTWAVCCNPEYDGFILSAGTDSTVNLWLV 282 (351)
Q Consensus 214 ~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 282 (351)
++- +..+ -+++|++||++|+||.++ .+.++.+... ..+|.+++-+. .+|++|+ ...+.+|.+
T Consensus 162 vv~R~~~~--qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhL 234 (325)
T KOG0649|consen 162 VVGRNANG--QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHL 234 (325)
T ss_pred eeecccCc--ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEec
Confidence 888 4444 488999999999999998 6566665421 23466665543 5666655 456899999
Q ss_pred CCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 283 STSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+. .++..++.- ..+|..+.|..+ .+++++..+.|.-|.+..
T Consensus 235 rs-------------------se~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 235 RS-------------------SESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cC-------------------CCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeecc
Confidence 98 666666633 345788888765 577777777777777653
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.8e-20 Score=153.41 Aligned_cols=257 Identities=13% Similarity=0.185 Sum_probs=182.6
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCC---CC--CeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSS---GG--TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS 86 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~---~~--~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~ 86 (351)
+......+..+.+.+....++.++ +++.+.+|++.. .. .....-.+.+|.++|.|++..++++.+++
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys---- 361 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS---- 361 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEec----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe----
Confidence 333445666677777777777664 688999999932 11 12233568899999999999999999888
Q ss_pred cCCcceEEEEEcccccCCCC-CCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018700 87 TGESYGAAIWQIPELYGQLN-SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 165 (351)
||-||+|+.|++.....+.+ .........+.+|.+.|+.+++++.... ++.++.||+|++|+...... ..+....
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~-- 437 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPK-- 437 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCcc--
Confidence 48999999999873222111 1122445678899999999999998885 77778899999999886444 1111111
Q ss_pred CcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecc---------eeEEEEcCCCCCcEEEEecCCCeEEE
Q 018700 166 GMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA---------HVRNVDYDTKKKHLLVTAADESGIHL 235 (351)
Q Consensus 166 ~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg~i~i 235 (351)
.+ ....++.+-..... .++...-+.-.+++++....+..+... ++.-+.++|... +.+++.+|+.|++
T Consensus 438 e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 438 EH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRF 515 (577)
T ss_pred cc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceec
Confidence 11 13445555433222 222223333334444444433333311 178889999998 8999999999999
Q ss_pred EecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 236 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+|..+ +.++.....|...++++++.|+| .+|++++.|+.+++|....
T Consensus 516 ~dn~~-~~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 516 FDNKT-GKILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccccc-cccchheeeccceecceeecCCC-ceEEeecCCceeehhhccc
Confidence 99998 77899999999999999999999 9999999999999999977
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1e-16 Score=141.73 Aligned_cols=285 Identities=21% Similarity=0.373 Sum_probs=201.3
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeee-CCCCCceEEEEeecCCcceEEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSS-CPFDQRIFSTVFSTGESYGAAI 95 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~-~~~~~~l~~~~~~~~~d~~i~v 95 (351)
.+..+.+.+....++.+. .++.+.+|++.... .....+..+. ..+..+.+ ++++..++... +..|+.+.+
T Consensus 67 ~i~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 138 (466)
T COG2319 67 SITSIAFSPDGELLLSGS----SDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLDGTVKL 138 (466)
T ss_pred eEEEEEECCCCcEEEEec----CCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEecc--CCCCccEEE
Confidence 344444555555555443 56777778777654 1223334433 37777777 78777344432 345899999
Q ss_pred EEcccccCCCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEec-CCcEEEEEcCCCCCCcccccccccCcccceee
Q 018700 96 WQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173 (351)
Q Consensus 96 w~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 173 (351)
|+.. . ......+..|...|..++|+|++.. +++++. |+.+++|++......... .+|...+.+
T Consensus 139 ~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~ 203 (466)
T COG2319 139 WDLS---------TPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSS 203 (466)
T ss_pred EEec---------CCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEee-----ccCCCceEE
Confidence 9987 3 5777888899999999999999983 555554 999999999862222211 236679999
Q ss_pred eEECCCCCcEEEe-ecCCeEEEEEcccCCcCc-eeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018700 174 GAWDPHDVNAVAA-TCESSVQFWDLRSMGKTN-SIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 174 ~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~-~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
++|+|++..++++ +.|+.|++||...+.... .+. .| .....|+|++. ++++++.|+.+++|+.+.....+..+.
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcceeEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 9999998844444 889999999988666655 233 44 22337999996 788999999999999997444344456
Q ss_pred CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec--cccceEEEEEeCCCCC
Q 018700 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--DYEDSVYGLAWSSREP 327 (351)
Q Consensus 250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~ 327 (351)
.|...+.++.|+|++ ..+++++.|+.+++||... ........ .|...+..+.|.+++.
T Consensus 282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
T COG2319 282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLET-------------------GKLLSSLTLKGHEGPVSSLSFSPDGS 341 (466)
T ss_pred cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCC-------------------CceEEEeeecccCCceEEEEECCCCC
Confidence 788999999999987 7777788899999998887 44444443 6777789999943324
Q ss_pred ceEEEeeeCCeEEEeecCcc
Q 018700 328 WIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 328 ~~l~s~~~dg~v~vw~~~~~ 347 (351)
.++.++..|+.+++|++...
T Consensus 342 ~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEEeecCCCcEEeeecCCC
Confidence 24444467899999998754
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.8e-18 Score=153.98 Aligned_cols=248 Identities=14% Similarity=0.165 Sum_probs=178.5
Q ss_pred ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc---ccceeEEEecC-CCCCcEEEEecC
Q 018700 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH---VGKINCVLWWS-SGRHDKLVSIDE 142 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~-~~~~~~~~~~~d 142 (351)
.-..+.|+|-...++++ +..-.|+|||.+ ..+.+..+..+ ...|+.+.+-. +...++++++.|
T Consensus 1066 ~pk~~~~hpf~p~i~~a----d~r~~i~vwd~e---------~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAA----DDRERIRVWDWE---------KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CCceeeecCCCceeEEc----CCcceEEEEecc---------cCceeccccCCCCCCCccceeeeecccchhheeeeccC
Confidence 45567888988888886 445689999998 44555555433 45688888754 445567888999
Q ss_pred CcEEEEEcCCCC-CCcccccc------cccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018700 143 ENIFLWSLDCSN-KNAQVQSK------QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR 212 (351)
Q Consensus 143 ~~v~iwd~~~~~-~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~ 212 (351)
|.|+||+--... ...++... ...+..+.-.-+.|.....+|++++.-..|+|||.........+..+. ++
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 999999865332 22222111 111111122345788888888888888999999999888777776444 77
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCCc--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 288 (351)
++.-+..+.+++++|..||.|++||.|.... .+...+.|... |..+.+.+.|-..|++|+.||.|++||++...
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence 7766555545999999999999999997543 56777788877 99999999885569999999999999999821
Q ss_pred CCCCcccccCCcccccccceeecccc---ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYE---DSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+...+...|. +..+++..|++.+ ++|+|+. +.|+||++..
T Consensus 1291 ---------------~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1291 ---------------KETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred ---------------ccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecCh
Confidence 11111222222 2489999999988 8999988 9999999864
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1e-18 Score=138.19 Aligned_cols=190 Identities=17% Similarity=0.292 Sum_probs=144.1
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeecce---
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--- 210 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--- 210 (351)
++++...|.|++||..+++....+. ++...++.+.|.. ....+.+++.||+|++||+|.......+....
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 5666678999999999855444433 3344677777765 34568888999999999999876665554222
Q ss_pred --eEEEEcCCCCCcEEEEecC----CCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018700 211 --VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (351)
Q Consensus 211 --v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 283 (351)
..+++.+-.+. ++++|.+ +-.|.+||.|...+++..+ ..|...|++++|+|..+.+|+||+.||.|.+||+.
T Consensus 118 ~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 118 TPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 67777776665 7887763 6789999999877756654 47999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
.... ...+...-.|...|..+.|..++-..+.+-+......+|+++..
T Consensus 197 ~d~E----------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 197 KDNE----------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCcc----------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 7211 22333334677789999999887334777788899999998753
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=4.7e-18 Score=133.46 Aligned_cols=205 Identities=13% Similarity=0.161 Sum_probs=161.7
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEecC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDE 142 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d 142 (351)
-..+|+|.+|++++..++.+ .....|.||.... .+ .+..+++..|...|++++|+|..++ +++++.|
T Consensus 9 ~~~pitchAwn~drt~iAv~----~~~~evhiy~~~~-------~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~d 76 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVS----PNNHEVHIYSMLG-------ADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHD 76 (361)
T ss_pred ccCceeeeeecCCCceEEec----cCCceEEEEEecC-------CCCceeceehhhhCcceeEEeecCCCCc-eeEccCC
Confidence 34799999999999998885 5777899999872 24 6889999999999999999999986 8888999
Q ss_pred CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC---ceeecce---eEEEEc
Q 018700 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDY 216 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~---v~~~~~ 216 (351)
..-++|....+..-...+. ...+...++++.|+|.++.+++|+....|.||-.+...-- ..+..+. |.+++|
T Consensus 77 rnayVw~~~~~~~Wkptlv--LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLV--LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred CCccccccCCCCeecccee--EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 9999999854443322221 1135568999999999999999999999999988765421 2222222 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEeccc------C-----------CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE
Q 018700 217 DTKKKHLLVTAADESGIHLWDLRM------L-----------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 279 (351)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~------~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 279 (351)
+|++- ++++|+.|+..|+|..-- + ++.+.++....+.+..+.|+|+| ..|+-.+.|+++.+
T Consensus 155 hpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSF 232 (361)
T ss_pred cCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEE
Confidence 99997 899999999999986421 0 12334444566889999999999 99999999999999
Q ss_pred EEcCC
Q 018700 280 WLVST 284 (351)
Q Consensus 280 wd~~~ 284 (351)
-|...
T Consensus 233 ~da~~ 237 (361)
T KOG1523|consen 233 VDAAG 237 (361)
T ss_pred eecCC
Confidence 98876
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.2e-17 Score=145.00 Aligned_cols=248 Identities=21% Similarity=0.347 Sum_probs=188.6
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce-eeeeeeccc-cceeEEEe-cCCCCCcE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE-RIAALDAHV-GKINCVLW-WSSGRHDK 136 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~h~-~~v~~~~~-~~~~~~~~ 136 (351)
....|...+..+.+.+.+..++.. +.|+.+.+|+... .. ....+..+. ..+..+.+ .+++...+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~----~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSG----SSDGTIKLWDLDN---------GEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEe----cCCCcEEEEEcCC---------CceeEEEEeccCCCceeeEEEECCCcceEE
Confidence 456799999999999999888875 5899999999882 22 555565543 36777777 77776324
Q ss_pred EEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CCeEEEEEcccCCcCceeecce--eE
Q 018700 137 LVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAH--VR 212 (351)
Q Consensus 137 ~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~--v~ 212 (351)
+.. ..|+.+.+|++....... .....|...+..++|+|++..+++++. ++.+++|++..+.....+.... +.
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLI----RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred eccCCCCccEEEEEecCCCeEE----EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence 443 448999999998511111 122345668899999999998888875 9999999999876666666312 99
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCccee-EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 291 (351)
+++|+|+++.++++++.|+.|++||.+. ...+. .+..|.... -..|+|++ .++++++.|+.+++|+...
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~------- 272 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS------- 272 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecC-------
Confidence 9999999974455558999999999884 55555 577888775 44899999 8999999999999999997
Q ss_pred CcccccCCccccccc-ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 292 SESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
... +..+..|...+.++.|+|++. .+++++.|+.+++|+....
T Consensus 273 ------------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 273 ------------SSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETG 316 (466)
T ss_pred ------------CCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCC
Confidence 232 334467788999999999877 6666888899999987643
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=1e-19 Score=159.25 Aligned_cols=241 Identities=15% Similarity=0.269 Sum_probs=179.6
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
+.+.+|.+.|.|+.|...+.++++ |+.|..++||..+ +..++..+++|.+.|+.++.+.++.. +++
T Consensus 184 krLlgH~naVyca~fDrtg~~Iit----gsdd~lvKiwS~e---------t~~~lAs~rGhs~ditdlavs~~n~~-iaa 249 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIIT----GSDDRLVKIWSME---------TARCLASCRGHSGDITDLAVSSNNTM-IAA 249 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEee----cCccceeeeeecc---------chhhhccCCCCccccchhccchhhhh-hhh
Confidence 457899999999999999999998 5899999999988 67889999999999999999887762 555
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc-----eeecce---
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-----SIEHAH--- 210 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~--- 210 (351)
++.|..|++|.+.++.....+ .+|++.|++++|+|-. +.+.||++++||.+-..... .+....
T Consensus 250 aS~D~vIrvWrl~~~~pvsvL-----rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVL-----RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred cccCceEEEEecCCCchHHHH-----hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence 588999999999975443322 2678899999999943 77889999999987111000 000000
Q ss_pred ------------------------eEEEEcCCCCCcEEEEec-----------CCCeEEEEecccCCcceeEeeCCCCce
Q 018700 211 ------------------------VRNVDYDTKKKHLLVTAA-----------DESGIHLWDLRMLKAPIQELPGHTHWT 255 (351)
Q Consensus 211 ------------------------v~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~v 255 (351)
..+++|....- .+++.+ .+-.+.+|++-. ++.++.+.+|...+
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l-if~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~ 398 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL-IFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEV 398 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHhhhhccce-EEEeccccccccceeeeeeeEeeeeeccc-chhhhhhcccccce
Confidence 22333332221 233322 334567777776 66778888999999
Q ss_pred eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEee
Q 018700 256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~ 334 (351)
..+.++|-+++...+++.||...|||+-. +.+++.+ .+|. .+..-+||++|. .++...
T Consensus 399 yvLd~Hpfn~ri~msag~dgst~iwdi~e-------------------g~pik~y~~gh~-kl~d~kFSqdgt-s~~lsd 457 (1113)
T KOG0644|consen 399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWE-------------------GIPIKHYFIGHG-KLVDGKFSQDGT-SIALSD 457 (1113)
T ss_pred eeeeecCCCcHhhhhccCCCceEeeeccc-------------------CCcceeeecccc-eeeccccCCCCc-eEecCC
Confidence 99999999988889999999999999987 5555544 3444 467788999998 566666
Q ss_pred eCCeEEEeecC
Q 018700 335 YDGRVVVESVK 345 (351)
Q Consensus 335 ~dg~v~vw~~~ 345 (351)
.-|.++|....
T Consensus 458 ~hgql~i~g~g 468 (1113)
T KOG0644|consen 458 DHGQLYILGTG 468 (1113)
T ss_pred CCCceEEeccC
Confidence 67888887654
No 185
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.82 E-value=6.6e-16 Score=132.09 Aligned_cols=294 Identities=12% Similarity=0.136 Sum_probs=195.6
Q ss_pred EEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc
Q 018700 31 FLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL 110 (351)
Q Consensus 31 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~ 110 (351)
+++|+.+.+..+.|+.++++...+.+.......-.....-++++|+++.|.++...+..++.|..|++... ....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-----~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-----TGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-----TTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-----ccee
Confidence 67888877778999999998888877766655556677789999999999887521115789999998831 1244
Q ss_pred eeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-c--------cCcccceeeeEECCCCC
Q 018700 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-S--------SGMLHYLSGGAWDPHDV 181 (351)
Q Consensus 111 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~--------~~~~~~v~~~~~~~~~~ 181 (351)
..+............++++|+++.++++...+|.|.++++............. . ........++.++|+++
T Consensus 77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 55555543445567899999999755555678999999998754333321100 0 01123467889999999
Q ss_pred cEEEee-cCCeEEEEEcccCCc-C---cee--ecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc---eeEeeC
Q 018700 182 NAVAAT-CESSVQFWDLRSMGK-T---NSI--EHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPG 250 (351)
Q Consensus 182 ~l~~~~-~d~~i~iwd~~~~~~-~---~~~--~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~ 250 (351)
++++.. ....|.+|++..... + ..+ ..+. .+.++|+|++++++++...++.|.+|++...... ++.+..
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 988875 456899999987652 1 112 2222 9999999999977777778899999999832211 222221
Q ss_pred C------CCceeEEEecCCCCCeEE-EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC
Q 018700 251 H------THWTWAVCCNPEYDGFIL-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS 323 (351)
Q Consensus 251 ~------~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 323 (351)
. ......|+++|+| ++|+ +...+++|.+|++..... ..+.+..+.......+.++++
T Consensus 237 ~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g---------------~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATG---------------TLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTT---------------TEEEEEEEEESSSSEEEEEE-
T ss_pred ccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCC---------------ceEEEEEEeCCCCCccEEEEe
Confidence 1 1257889999999 5555 455678999999953100 023333333333447899999
Q ss_pred CCCCceEEEeeeCCeEEEeecC
Q 018700 324 SREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 324 ~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
|+|++++++...++.|.+|+++
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEEEe
Confidence 9999666666688999999885
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=3.5e-17 Score=131.02 Aligned_cols=237 Identities=15% Similarity=0.146 Sum_probs=170.0
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe-cCC
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEE 143 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~d~ 143 (351)
...+..+.|+.+...|.. |+.|| .++|+.+ ..............|..+-|+..= +.+++- .-.
T Consensus 5 ~~ti~~~~~Nqd~~~lsv----Gs~~G-yk~~~~~---------~~~k~~~~~~~~~~IvEmLFSSSL--vaiV~~~qpr 68 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSV----GSKDG-YKIFSCS---------PFEKCFSKDTEGVSIVEMLFSSSL--VAIVSIKQPR 68 (391)
T ss_pred CcceeeeeeccceeEEEc----cCCCc-eeEEecC---------chHHhhcccCCCeEEEEeecccce--eEEEecCCCc
Confidence 345667778876655444 45664 6788876 222222222223345556666541 123332 234
Q ss_pred cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--e---eEEEEcCC
Q 018700 144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H---VRNVDYDT 218 (351)
Q Consensus 144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~---v~~~~~~~ 218 (351)
.+++++.+....+....... +|.++.++. +.|++.-.+ .|+|||+++.+.+.++... + +..+++++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt------~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~ 139 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPT------SILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN 139 (391)
T ss_pred eEEEEEcccCceEEEEecCC------ceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC
Confidence 68899988655555544433 899998875 456665544 4999999999998888743 3 66777777
Q ss_pred CCCcEEEEec-CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe-EEEEEcCCCCCCCCCCcccc
Q 018700 219 KKKHLLVTAA-DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSESLV 296 (351)
Q Consensus 219 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~ 296 (351)
.+.++.+-++ ..|.|.+||..+ -+++..+..|.+++.+++|+++| .+|||++..|+ ||+|.+..
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~------------ 205 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE------------ 205 (391)
T ss_pred CCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC------------
Confidence 7765444444 458999999998 66899999999999999999999 99999999995 79999998
Q ss_pred cCCcccccccceeeccc--cceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 297 ESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
++.+..|+-. ...|.+++|+|+++ +|++.+..++|.++++++..
T Consensus 206 -------G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 -------GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred -------ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 8888888543 34688999999999 89999999999999997643
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=148.72 Aligned_cols=230 Identities=10% Similarity=0.196 Sum_probs=173.7
Q ss_pred ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEE
Q 018700 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF 146 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~ 146 (351)
.|..++|-|||..|+.+ .+..+.+||.. .+..+.++++|++.|.|++|+.+|+. +++++.|..|.
T Consensus 14 ci~d~afkPDGsqL~lA-----Ag~rlliyD~n---------dG~llqtLKgHKDtVycVAys~dGkr-FASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-----AGSRLLVYDTS---------DGTLLQPLKGHKDTVYCVAYAKDGKR-FASGSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEe-----cCCEEEEEeCC---------CcccccccccccceEEEEEEccCCce-eccCCCceeEE
Confidence 89999999999999886 45689999988 67889999999999999999999994 55558899999
Q ss_pred EEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEE
Q 018700 147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVT 226 (351)
Q Consensus 147 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 226 (351)
+|...-. -++. ..|...|.++.|+|-...|++++-. ..-+|..........-....+.+++|..||+ +++.
T Consensus 79 ~W~~klE----G~Lk---YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylal 149 (1081)
T KOG1538|consen 79 IWTSKLE----GILK---YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLAL 149 (1081)
T ss_pred Eeccccc----ceee---eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCc-EEEE
Confidence 9987621 1221 2467799999999998888877633 4568987765433322222399999999999 7899
Q ss_pred ecCCCeEEEEecccCCcceeEee---CCCCceeEEEecCCC----CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018700 227 AADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEY----DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299 (351)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 299 (351)
|-.||+|.+-+-. +++...++ +..++|.+++|+|.. ...++......++.++.+.
T Consensus 150 G~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls---------------- 211 (1081)
T KOG1538|consen 150 GMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS---------------- 211 (1081)
T ss_pred eccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec----------------
Confidence 9999999998654 22222333 467899999999864 2467777777788887776
Q ss_pred cccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
++.+..-+.-.-...++.+.++|. ++..||.|+.+.+|-
T Consensus 212 ----G~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 212 ----GKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFT 250 (1081)
T ss_pred ----ceeecccccCCCCchhheeccCCc-EEEEccCCCceEEEe
Confidence 344433333333457899999999 778888899888774
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1e-17 Score=150.47 Aligned_cols=285 Identities=18% Similarity=0.155 Sum_probs=184.3
Q ss_pred CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC-CCCceEEEEeecCCcceEEEEEccccc
Q 018700 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELY 102 (351)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~ 102 (351)
+++-...++++ ++...|.+|++......-....-......|..+.+-. ++.-|+.+ ++.||.|+||+-....
T Consensus 1072 ~hpf~p~i~~a----d~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLt---as~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1072 FHPFEPQIAAA----DDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLT---ASSDGVIRIWKDYADK 1144 (1387)
T ss_pred ecCCCceeEEc----CCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheee---eccCceEEEecccccc
Confidence 44444445543 3467788888776542111111112336888888854 33334433 3899999999854211
Q ss_pred CCCCCCcceeeeeeec-------cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018700 103 GQLNSPQLERIAALDA-------HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (351)
Q Consensus 103 ~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (351)
. ...+.+....+ ..+.=.-+.|.....+ ++++++-..|+|||..+......+.... ...++++.
T Consensus 1145 ~----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s----~t~vTaLS 1215 (1387)
T KOG1517|consen 1145 W----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGS----STLVTALS 1215 (1387)
T ss_pred c----CCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccCC----Cccceeec
Confidence 0 12233332221 1122244678877665 6666667899999999654444333322 23566665
Q ss_pred ECC-CCCcEEEeecCCeEEEEEcccCCc--Cceeecce-----eEEEEcCCCCCcEEEEecCCCeEEEEecccC-Cccee
Q 018700 176 WDP-HDVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQ 246 (351)
Q Consensus 176 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~ 246 (351)
-+. .|+.+++|..||.|++||.+.... .......| |..+.+.+.|-.-+++|+.||.|++||+|.. .....
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 433 367888999999999999986543 21222233 8888998877645999999999999999973 22222
Q ss_pred EeeCCC--C-ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-------ccce
Q 018700 247 ELPGHT--H-WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------YEDS 316 (351)
Q Consensus 247 ~~~~~~--~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 316 (351)
.+..|. + ..+++..++.. ..+|+|+. +.|+||++.- +.+..++. ....
T Consensus 1296 ~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G--------------------~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSG--------------------EQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred eeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecCh--------------------hhhcccccCcccccCcCCC
Confidence 233333 3 48999999998 99999998 9999999974 33333322 2245
Q ss_pred EEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 317 VYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 317 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+.+++|||..- ++|+|+.|..|.||..++.
T Consensus 1354 ~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1354 VSCLAFHPHRL-LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cceeeecchhH-hhhhccCCceEEEeecCCc
Confidence 78999999876 8999999999999998754
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.9e-16 Score=135.28 Aligned_cols=246 Identities=13% Similarity=0.147 Sum_probs=157.6
Q ss_pred ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018700 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL 101 (351)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~ 101 (351)
+.++++...++++.. .++.|.+|++.+. +.+.........+....++|+|+++.++++. ..++.|.+|++.+.
T Consensus 40 l~~spd~~~lyv~~~---~~~~i~~~~~~~~-g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~---~~~~~v~v~~~~~~ 112 (330)
T PRK11028 40 MVISPDKRHLYVGVR---PEFRVLSYRIADD-GALTFAAESPLPGSPTHISTDHQGRFLFSAS---YNANCVSVSPLDKD 112 (330)
T ss_pred EEECCCCCEEEEEEC---CCCcEEEEEECCC-CceEEeeeecCCCCceEEEECCCCCEEEEEE---cCCCeEEEEEECCC
Confidence 456777777777653 4688888999743 3332222223445677899999999999874 45789999998621
Q ss_pred cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc---cccccCcccceeeeEECC
Q 018700 102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ---SKQSSGMLHYLSGGAWDP 178 (351)
Q Consensus 102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~ 178 (351)
.. ..+.+..+ .+.....+++++|+++.++++...++.|.+||+++........ ..... ......+.|+|
T Consensus 113 g~-----~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~p 184 (330)
T PRK11028 113 GI-----PVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHP 184 (330)
T ss_pred CC-----CCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECC
Confidence 00 01122222 2234467788999999755555678999999998633221100 00001 12466889999
Q ss_pred CCCcEEEeec-CCeEEEEEcccC--Cc--Cceee---c----ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce
Q 018700 179 HDVNAVAATC-ESSVQFWDLRSM--GK--TNSIE---H----AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245 (351)
Q Consensus 179 ~~~~l~~~~~-d~~i~iwd~~~~--~~--~~~~~---~----~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 245 (351)
++++++++.. ++.|.+||++.. +. ...+. . .. ...+.++|++++++++...++.|.+|++......+
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 9999988875 899999999742 21 11111 0 01 34688999999544443457899999997533222
Q ss_pred eEeeCC---CCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018700 246 QELPGH---THWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST 284 (351)
Q Consensus 246 ~~~~~~---~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 284 (351)
++..+ ......+.++|+| ++|+++. .+++|.+|++..
T Consensus 265 -~~~~~~~~~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 265 -SFEGHQPTETQPRGFNIDHSG-KYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred -EEeEEEeccccCCceEECCCC-CEEEEEEccCCcEEEEEEcC
Confidence 22212 1245678999999 6666555 489999998864
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.9e-18 Score=143.77 Aligned_cols=227 Identities=14% Similarity=0.197 Sum_probs=157.7
Q ss_pred eeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecC
Q 018700 112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCE 189 (351)
Q Consensus 112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 189 (351)
....+.+|++-|.|+.|+.+|. +++++++|-.+.|||.-.. +.+.....+|+..|.++.|-|. ++.+++|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~----KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEY----KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhc----ceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 3456789999999999999999 3556688999999998842 2333334578899999999885 4567888899
Q ss_pred CeEEEEEcccCC----------cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-------
Q 018700 190 SSVQFWDLRSMG----------KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP------- 249 (351)
Q Consensus 190 ~~i~iwd~~~~~----------~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------- 249 (351)
..|+++|+...+ ....+. .| |..++..|++++.+.++++||+|+-||+|.+..+-....
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 999999998522 111111 23 888999999988999999999999999997543222111
Q ss_pred --CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-cccc-----------c
Q 018700 250 --GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYE-----------D 315 (351)
Q Consensus 250 --~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~ 315 (351)
..--...++..+|..+.+|+.|+.|-..++||.+...+.....+.....+++ ...++.-+ .+|. .
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~-~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPK-DCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCc-ccchhheecCccccCccccccccee
Confidence 1123467899999999999999999999999966432222222221222211 11222222 1111 1
Q ss_pred eEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 316 SVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 316 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.++-++|+|+|.-+|++-+.+ .|+++|+..
T Consensus 275 ~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~ 304 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGE-HVYLFDVNE 304 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCe-EEEEEeecC
Confidence 256789999998677776644 799999864
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=4.4e-18 Score=145.15 Aligned_cols=246 Identities=15% Similarity=0.182 Sum_probs=172.5
Q ss_pred eCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC
Q 018700 73 SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC 152 (351)
Q Consensus 73 ~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 152 (351)
|+.+..++++-. .|..|.|.||++.+...- +.+. +-.+ .....|+.+.|.|-...-++++++||.|++|.+..
T Consensus 587 fcan~~rvAVPL--~g~gG~iai~el~~PGrL---PDgv-~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 587 FCANNKRVAVPL--AGSGGVIAIYELNEPGRL---PDGV-MPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred eeeccceEEEEe--cCCCceEEEEEcCCCCCC---Cccc-cccc-ccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 455555555443 456789999999842111 1111 1122 24567999999997766577889999999999987
Q ss_pred CCCCcccc--cccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEE
Q 018700 153 SNKNAQVQ--SKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVT 226 (351)
Q Consensus 153 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~ 226 (351)
+....... ......|...|+++.|+|-. +.|++++.|-+|++||+++++....+. +| |..++|+|+|+ .+++
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr-~~At 737 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGR-RIAT 737 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCc-ceee
Confidence 65443332 23355788899999999964 567788999999999999998877777 66 99999999999 8999
Q ss_pred ecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCC----eEEEEEcCCCCCCCCCCcccccCCcc
Q 018700 227 AADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQ 301 (351)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (351)
.+.||+|++|..++..+++++-.+.- ..--.|.|.-+| ++++..+.|. .|.+||.+...
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~--------------- 801 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD--------------- 801 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc---------------
Confidence 99999999999998677776654322 233567888899 7777666554 67888877611
Q ss_pred cccccceee--ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 302 RANSLLNSY--SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 302 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
..++.+. ..... +.--.+.+|...++++|-.|..|.+|.+-.
T Consensus 802 --~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 802 --LRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred --CCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecC
Confidence 2222222 11111 111234566666888999999999999854
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.8e-17 Score=145.90 Aligned_cols=211 Identities=10% Similarity=0.102 Sum_probs=140.2
Q ss_pred cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--CCcEEEEEcCCCCCCcccccccccCc
Q 018700 90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
+..|.+||.. . .....+..|...+...+|+|+|+.++.++.. +..|++||+.++.... +. ...+
T Consensus 183 ~~~i~i~d~d---------g-~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~--~~~g- 248 (429)
T PRK01742 183 PYEVRVADYD---------G-FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA--SFRG- 248 (429)
T ss_pred eEEEEEECCC---------C-CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee--cCCC-
Confidence 5789999986 2 2244566788899999999999974444432 3479999998653221 11 1122
Q ss_pred ccceeeeEECCCCCcEEEee-cCCeEEEE--EcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018700 168 LHYLSGGAWDPHDVNAVAAT-CESSVQFW--DLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (351)
....++|+||++.|+.+. .+|.+.|| |+.+++. ..+.... +...+|+|+|+.+++++..++...||+++...
T Consensus 249 --~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 249 --HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred --ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 234689999999888765 57765555 6655543 3333222 77899999999656666677888999876533
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW 322 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 322 (351)
.....+ .+.. ..+.|+|+| .+|+..+.++ +.+||+.. ++.......+ ....+.|
T Consensus 326 ~~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~-------------------g~~~~lt~~~--~~~~~~~ 379 (429)
T PRK01742 326 GGASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTS-------------------GSTEVLSSTF--LDESPSI 379 (429)
T ss_pred CCeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCC-------------------CCeEEecCCC--CCCCceE
Confidence 333333 3433 467899999 7887777665 55699876 3332211122 2356789
Q ss_pred CCCCCceEEEeeeCCeEEEeec
Q 018700 323 SSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 323 ~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
+|+|+ +|+.++.++.+.+|.+
T Consensus 380 sPdG~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 380 SPNGI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCC-EEEEEEcCCCceEEEE
Confidence 99999 7888888888887775
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.6e-17 Score=133.06 Aligned_cols=194 Identities=12% Similarity=0.156 Sum_probs=146.0
Q ss_pred eEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC
Q 018700 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT 203 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 203 (351)
.+++|+.+|.. +.+++.||.+++|+......... ...|...|.++.|+||++.|++.+.| ..+||+.+++..+
T Consensus 148 k~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~-----e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILE-----EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCE-eeeccccceEEEEecCcchhhhh-----hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 68999999983 66668999999999764322222 22456699999999999999999999 9999999999666
Q ss_pred ceeecce----eEEEEcCCCC---Cc-EEEEecCCCeEEEEecccCCc----ceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018700 204 NSIEHAH----VRNVDYDTKK---KH-LLVTAADESGIHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSA 271 (351)
Q Consensus 204 ~~~~~~~----v~~~~~~~~~---~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 271 (351)
....+.. ...+.|+.++ .. +++....-+.|+.||+..... +..+.......|++++.+++| ++++.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 5554211 7788888776 32 333334456777777654322 222222234579999999999 999999
Q ss_pred eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
+.||.|.|++... .+.++.. +.|...|+.+.|+|+.+ .+++.+.|....|..+.
T Consensus 300 T~dGsVai~~~~~-------------------lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 300 TMDGSVAIYDAKS-------------------LQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLA 354 (398)
T ss_pred ccCCcEEEEEece-------------------eeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEe
Confidence 9999999999987 5555444 57999999999999988 78889989988887765
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=4.8e-19 Score=145.47 Aligned_cols=229 Identities=12% Similarity=0.189 Sum_probs=183.7
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v 145 (351)
..-..+.++.+|+.++. ||.-|.|..+|.. +.+....+. -...|.++.|..+.+ ++|......+
T Consensus 130 FGPY~~~ytrnGrhlll----gGrKGHlAa~Dw~---------t~~L~~Ei~-v~Etv~Dv~~LHneq--~~AVAQK~y~ 193 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLL----GGRKGHLAAFDWV---------TKKLHFEIN-VMETVRDVTFLHNEQ--FFAVAQKKYV 193 (545)
T ss_pred cCCeeeeecCCccEEEe----cCCccceeeeecc---------cceeeeeee-hhhhhhhhhhhcchH--HHHhhhhceE
Confidence 34457888999999998 4899999999988 556655553 346789999998888 5666677899
Q ss_pred EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcE
Q 018700 146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHL 223 (351)
Q Consensus 146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~ 223 (351)
+|||-.. .....+.... .|..+.|.|..-.|++++..|.++.-|+.+|+.+..+..+. +..++-+|-+. +
T Consensus 194 yvYD~~G-tElHClk~~~------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-V 265 (545)
T KOG1272|consen 194 YVYDNNG-TELHCLKRHI------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-V 265 (545)
T ss_pred EEecCCC-cEEeehhhcC------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-e
Confidence 9999762 3333333322 78899999988778888899999999999999998887555 88899999998 8
Q ss_pred EEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccc
Q 018700 224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA 303 (351)
Q Consensus 224 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
+-+|..+|+|.+|.... ..|+..+..|.++|.+|++.++| +|++|.+.|..++|||++.
T Consensus 266 ih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~------------------- 324 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRN------------------- 324 (545)
T ss_pred EEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecc-------------------
Confidence 88999999999999987 77888888899999999999999 9999999999999999998
Q ss_pred cccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
...+.++.. ..+...+++|..| +| +++....|.||.
T Consensus 325 ~~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 325 FYQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWK 360 (545)
T ss_pred ccccceeec-CCCcccccccccc--ce-eeecCCeeeeeh
Confidence 555555543 3356788898765 34 444556799995
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.2e-16 Score=140.84 Aligned_cols=239 Identities=12% Similarity=0.118 Sum_probs=154.6
Q ss_pred CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc
Q 018700 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG 121 (351)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 121 (351)
..|.+++++..+ ...+..|...+.+.+|+|+++.|+.+.+. ..+..|.+||+.. ...+.+..+.+|
T Consensus 184 ~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~t-------g~~~~l~~~~g~-- 249 (429)
T PRK01742 184 YEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRS-------GARKVVASFRGH-- 249 (429)
T ss_pred EEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEec-CCCcEEEEEeCCC-------CceEEEecCCCc--
Confidence 456666654432 13455688889999999999999876421 2345799999872 122334334443
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEE--EcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcc
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLW--SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR 198 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 198 (351)
...++|+|+|+.+++++..+|.+.|| |+.++. ...+ . .+...+.+..|+|+++.|+.++ .++...+|++.
T Consensus 250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~l-t----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQL-T----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEee-c----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 34689999999644444567766655 554332 2221 1 2233577899999999877665 56888888876
Q ss_pred cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018700 199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (351)
Q Consensus 199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 277 (351)
......... .+ -....|+|+|+ .++..+.++ +.+||+.+ +... .+..+ .....+.|+|+| .+|+.++.++.+
T Consensus 323 ~~~~~~~~l-~~~~~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~-g~~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~ 395 (429)
T PRK01742 323 ASGGGASLV-GGRGYSAQISADGK-TLVMINGDN-VVKQDLTS-GSTE-VLSST-FLDESPSISPNG-IMIIYSSTQGLG 395 (429)
T ss_pred CCCCCeEEe-cCCCCCccCCCCCC-EEEEEcCCC-EEEEECCC-CCeE-EecCC-CCCCCceECCCC-CEEEEEEcCCCc
Confidence 432211111 11 24578999999 565555554 55699876 4322 23222 234568899999 899988889988
Q ss_pred EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018700 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (351)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (351)
.+|++... .+.....+..|...+...+|+|-
T Consensus 396 ~~l~~~~~-----------------~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 396 KVLQLVSA-----------------DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEEEEEC-----------------CCCceEEccCCCCCCCCcccCCC
Confidence 88876420 16677778888888899999984
No 196
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.7e-15 Score=120.53 Aligned_cols=297 Identities=13% Similarity=0.148 Sum_probs=205.0
Q ss_pred ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCC
Q 018700 29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP 108 (351)
Q Consensus 29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~ 108 (351)
...++|+.+..+...|+.|++....+.+....+..+.+.++-|+|+|+++.|.++. ..+.++.|..|.++... +
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~-----G 76 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDD-----G 76 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCC-----C
Confidence 46789999988899999999998777777777888899999999999998888874 23457889999887311 1
Q ss_pred cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc----ccCc----ccceeeeEECCCC
Q 018700 109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ----SSGM----LHYLSGGAWDPHD 180 (351)
Q Consensus 109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~~----~~~v~~~~~~~~~ 180 (351)
....+........+.+.++++++++.++.+....|.|.++-++............ ...| ..-+....+.|++
T Consensus 77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 2233333323334458899999999755555667999999997654433331111 1111 1126778899999
Q ss_pred CcEEEee-cCCeEEEEEcccCCcCc----eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC---
Q 018700 181 VNAVAAT-CESSVQFWDLRSMGKTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--- 251 (351)
Q Consensus 181 ~~l~~~~-~d~~i~iwd~~~~~~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 251 (351)
++|++.. .-..|.+|++..+.... .++.+. .+.|.|+|++++..++.--+++|-+|........+..++.+
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 9999875 34579999999765432 223233 99999999999656666679999999998643344444322
Q ss_pred ------CCceeEEEecCCCCCeEEEeeC-CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 252 ------THWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 252 ------~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
..+...|..+|+| ++|.++.. ...|-+|.+...+.. ...+.....+....+.+.+++
T Consensus 237 P~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~---------------L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGK---------------LELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred ccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCE---------------EEEEEEeccCCcCCccceeCC
Confidence 2456789999999 88877654 458888888752110 122222233444478999999
Q ss_pred CCCceEEEeeeCCeEEEeecCcc
Q 018700 325 REPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
.++.++|+.-.+..|.+|..++.
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCC
Confidence 99955555556677999988753
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=2.9e-17 Score=132.89 Aligned_cols=250 Identities=15% Similarity=0.253 Sum_probs=170.9
Q ss_pred EeeeecCCCCcc-eEEEeeeeeCCCCEEEEEEeCCCCC-----eE-EEEeeecCCcceeeeeeCCCCCceEEEEeecCCc
Q 018700 18 CISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGT-----EL-ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES 90 (351)
Q Consensus 18 ~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~-----~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d 90 (351)
++..+.+..+.. +++.| +.+..|++|.+..... .+ ....+..|...|+.+.|+|+|..|++ |+.+
T Consensus 15 pv~s~dfq~n~~~~laT~----G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS----g~D~ 86 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATA----GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS----GGDG 86 (434)
T ss_pred ceEEEEeccCcccceecc----cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee----cCCC
Confidence 444455555554 55554 4678899998774321 22 23557789999999999999999888 4899
Q ss_pred ceEEEEEcccc-------cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc
Q 018700 91 YGAAIWQIPEL-------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ 163 (351)
Q Consensus 91 ~~i~vw~~~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~ 163 (351)
+.|.+|..... .....++.+.....+.+|...|..++|+|++.. +++++.|..+++||+..+.....
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~----- 160 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAI----- 160 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEee-----
Confidence 99999987621 112233456677788999999999999999994 66778899999999997643332
Q ss_pred ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--------------------cce-----eEEEEcCC
Q 018700 164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------------------HAH-----VRNVDYDT 218 (351)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------------------~~~-----v~~~~~~~ 218 (351)
..+|...+..++|.|.++++++-+.|...+.+++...+...... +.. ...++|+|
T Consensus 161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP 240 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP 240 (434)
T ss_pred ccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC
Confidence 23566689999999999988887777655555543222111100 000 34455555
Q ss_pred CCCcEEEEe---------------------------------------------------------------------cC
Q 018700 219 KKKHLLVTA---------------------------------------------------------------------AD 229 (351)
Q Consensus 219 ~~~~~l~~~---------------------------------------------------------------------~~ 229 (351)
+|. ++++. ..
T Consensus 241 dG~-llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 241 DGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred CCc-EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 554 32221 11
Q ss_pred CCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 230 ESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 230 dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
...|++||.++ -.|+... ..|-..++.++|+++| .+|+..+.||...+--++.
T Consensus 320 ~~svyvydtq~-~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 320 KNSVYVYDTQT-LEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred cceEEEecccc-ccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEcc
Confidence 23477888776 3344444 3588899999999999 9999999999877765554
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=1.7e-16 Score=124.81 Aligned_cols=244 Identities=15% Similarity=0.162 Sum_probs=181.3
Q ss_pred cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018700 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~ 91 (351)
+.+-..++...+++++...++++. ..+++.++.............+..|...|+.++|+|..++|+++ +.|.
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~----~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc----s~dr 77 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSP----NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC----SHDR 77 (361)
T ss_pred eeeccCceeeeeecCCCceEEecc----CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc----cCCC
Confidence 333456778888999999999975 45788998887765456667888999999999999999999885 8999
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v 171 (351)
.-.||.... ..+.++...+..+....+++.|+|.++. +++++.-..|.||-++..+. .-+.......+...|
T Consensus 78 nayVw~~~~------~~~WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENd-WWVsKhikkPirStv 149 (361)
T KOG1523|consen 78 NAYVWTQPS------GGTWKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQEND-WWVSKHIKKPIRSTV 149 (361)
T ss_pred CccccccCC------CCeeccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccc-eehhhhhCCccccce
Confidence 999999841 3467777788889999999999999984 77777778899998875332 222222233456689
Q ss_pred eeeEECCCCCcEEEeecCCeEEEEEcc-----cC-------------CcCceee-cce-eEEEEcCCCCCcEEEEecCCC
Q 018700 172 SGGAWDPHDVNAVAATCESSVQFWDLR-----SM-------------GKTNSIE-HAH-VRNVDYDTKKKHLLVTAADES 231 (351)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~-----~~-------------~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg 231 (351)
.++.|+|++-.|++|+.|+..+++..- .. +.+..+. .+. +..+.|+|+|. .|+-.+.|.
T Consensus 150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds 228 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDS 228 (361)
T ss_pred eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCC
Confidence 999999999999999999999998642 11 1112221 122 99999999998 788888999
Q ss_pred eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018700 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD 274 (351)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 274 (351)
.+.+-|...+.+.+.....-.-+..++.|-.+. .++.++.|
T Consensus 229 ~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~ 269 (361)
T KOG1523|consen 229 TVSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYD 269 (361)
T ss_pred ceEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCC
Confidence 999999876554455544444777777776543 34444444
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.1e-18 Score=136.81 Aligned_cols=195 Identities=13% Similarity=0.180 Sum_probs=146.6
Q ss_pred eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEE
Q 018700 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFL 147 (351)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~i 147 (351)
..++|+++|..+++ ++.||++|||+.+ ....+.....|..+|.++.|+||++ ++++ +.| ..+|
T Consensus 148 k~vaf~~~gs~lat----gg~dg~lRv~~~P---------s~~t~l~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT----GGTDGTLRVWEWP---------SMLTILEEIAHHAEVKDLDFSPDGK--FLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCCEeee----ccccceEEEEecC---------cchhhhhhHhhcCccccceeCCCCc--EEEEecCC-ceEE
Confidence 57899999988877 5899999999987 5677777788999999999999999 5555 777 9999
Q ss_pred EEcCCCCCCcccccccccCcccceeeeEECCCC---CcEEEee--cCCeEEEEEcccCCcC-----ceeecce--eEEEE
Q 018700 148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAAT--CESSVQFWDLRSMGKT-----NSIEHAH--VRNVD 215 (351)
Q Consensus 148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~d~~i~iwd~~~~~~~-----~~~~~~~--v~~~~ 215 (351)
|+.+++......... +-......+.|+.++ .+.+++. ..+.|+.||+.....- .+....+ |.+++
T Consensus 212 W~~~~g~~~a~~t~~---~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 212 WSVNTGAALARKTPF---SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred EEeccCchhhhcCCc---ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 999987444333221 222356667777665 3333332 4567777776543221 1111122 99999
Q ss_pred cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+++|+ +++.|+.||.|.|++..+.+.....-+.|...|+.+.|+|+. +++++.+.|..+.+..+..
T Consensus 289 VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 999999 899999999999999987554444445899999999999999 9999999999999887764
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.6e-16 Score=118.52 Aligned_cols=277 Identities=15% Similarity=0.197 Sum_probs=186.2
Q ss_pred EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC-------CCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCc
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-------GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES 90 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d 90 (351)
.+-..+++|...-|++|. ..+.|.+..+... .++.......+|+++|..++|. ...|+++ .|
T Consensus 12 tvf~qa~sp~~~~l~agn----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-----gd 80 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGN----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-----GD 80 (325)
T ss_pred HHHHHhhCCcceEEEEec----CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-----cC
Confidence 344456677777777774 3577777776631 2333444557999999999998 4566663 67
Q ss_pred ceEEEEEcccccCCCCCCcceeeee--eecc-----ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAA--LDAH-----VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ 163 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~--~~~h-----~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~ 163 (351)
|.|+=|...+..... ..+++-. ...| --.|+++-..|..+.+++++ .|+.++-||++++... ..
T Consensus 81 G~V~gw~W~E~~es~---~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~-----r~ 151 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESL---ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQ-----RE 151 (325)
T ss_pred ceEEEeeehhhhhhc---cchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEE-----EE
Confidence 999999876432211 0111111 1112 23688999998887755554 7999999999975422 33
Q ss_pred ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--------e----eEEEEcCCCCCcEEEEecCCC
Q 018700 164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H----VRNVDYDTKKKHLLVTAADES 231 (351)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~----v~~~~~~~~~~~~l~~~~~dg 231 (351)
..+|+..+.++.--.....+++|+.||++++||.++++.+..+..- + |.+++.+.+ ++++|+ ..
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp 227 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GP 227 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CC
Confidence 4578889999988555667999999999999999999988777521 1 666766544 677554 46
Q ss_pred eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018700 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS 311 (351)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
.+.+|.++. ..+...+. -..++..+.|.. ..+++++..+.+.-|.+.- .+-....
T Consensus 228 ~lslwhLrs-se~t~vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~G--------------------vl~a~ip 282 (325)
T KOG0649|consen 228 KLSLWHLRS-SESTCVFP-IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNG--------------------VLQANIP 282 (325)
T ss_pred ceeEEeccC-CCceEEEe-cccceeEeeeec---ceEEEeccccceeeeeecc--------------------EEEEecc
Confidence 899999998 66777765 456788888876 4678888888899998863 3333333
Q ss_pred cccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 312 DYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 312 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
......++..|+..--.++..++..+.+.|+.
T Consensus 283 ~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 283 VESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred CCccceeeecccCCceEEEEecccceeeeeee
Confidence 33334566666543222566677778887764
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.7e-17 Score=138.12 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=155.0
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCC-CcE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR-HDK 136 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~~~ 136 (351)
+.+.||++.|+++.|+.+|..|++ |+.|-.+.|||.- ..++++.+ .+|.+.|.++.|-|... .++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~S----GSDD~r~ivWd~~---------~~KllhsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLAS----GSDDTRLIVWDPF---------EYKLLHSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhccccceecceeecCCCCEEee----cCCcceEEeecch---------hcceeeeeecccccceeEEeeeccCCCeEE
Confidence 567899999999999999999988 5899999999987 45555554 68999999999999653 345
Q ss_pred EEEecCCcEEEEEcCCCCC-----CcccccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCce-----
Q 018700 137 LVSIDEENIFLWSLDCSNK-----NAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNS----- 205 (351)
Q Consensus 137 ~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~----- 205 (351)
++++.|..|+++|+..... ...........|...|.-++-.|++ ..+.+++.||+|+-+|++....-..
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 5557899999999985221 1112222345677889999999998 4567889999999999996421111
Q ss_pred --ee--cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----------------ceeEee-CCC--------
Q 018700 206 --IE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----------------PIQELP-GHT-------- 252 (351)
Q Consensus 206 --~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~-------- 252 (351)
+. ... ..|+..+|..+++|++|+.|-..++||.|...+ ++.-+. +|-
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 11 011 789999999999999999999999999553211 122221 121
Q ss_pred ---CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 253 ---HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 253 ---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
..++-+.|+|+|..+|++-+.+ .|+++|+...
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~ 305 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNED 305 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCC
Confidence 1146678999996666655544 6999999874
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=137.57 Aligned_cols=198 Identities=18% Similarity=0.256 Sum_probs=150.4
Q ss_pred CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
++||.+.+-+-. .+....+..|.+.+.+-.|+|+|.. +++++.||.|++|.-.. -........
T Consensus 82 s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSrsG--MLRStl~Q~---- 144 (737)
T KOG1524|consen 82 SNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSRSG--MLRSTVVQN---- 144 (737)
T ss_pred cCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEeccc--hHHHHHhhc----
Confidence 789998887743 4556677899999999999999996 77889999999998662 222222211
Q ss_pred ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018700 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (351)
..+|+|++|.|+.+.++.+. .+.+.|=.+.....+.... .| |.++.|++... ++++|++|-..++||-. +++
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~--G~~ 219 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ--GAN 219 (737)
T ss_pred CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCcccc-ceeecCCceeEEeeccc--Ccc
Confidence 23899999999988776643 4566666666555555555 55 99999999998 99999999999999976 677
Q ss_pred eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
+..-..|+.+|++++|+|+. .++.++.+ ++| ++ +...+.|..++||+
T Consensus 220 Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R---~~---------------------------~p~~GSifnlsWS~ 266 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPEK--DYLLWSYN-TAR---FS---------------------------SPRVGSIFNLSWSA 266 (737)
T ss_pred cccCChhccceeeeeecccc--ceeeeeee-eee---ec---------------------------CCCccceEEEEEcC
Confidence 88888899999999999983 55555532 333 11 12345799999999
Q ss_pred CCCceEEEeeeCCeEEE
Q 018700 325 REPWIFASLSYDGRVVV 341 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~v 341 (351)
||. .++.|...|.+.+
T Consensus 267 DGT-Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 267 DGT-QATCGTSTGQLIV 282 (737)
T ss_pred CCc-eeeccccCceEEE
Confidence 999 7888888887655
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2e-16 Score=127.59 Aligned_cols=252 Identities=15% Similarity=0.160 Sum_probs=182.2
Q ss_pred ecCCcceeeeeeCCCCCc-eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 62 FSHPNEIWDLSSCPFDQR-IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~-l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
......|..++|.-+++. ++.+ .+.+..+..+.+.+..- .+....+........+|..++.. ++. ++++-
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~---r~~~~~~~~~~~~E~~~---~s~~~~~~~~~l~~~~I~gl~~~-dg~--Litc~ 122 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNA---RSADDDLPKFVIEEFEI---SSSLDDAKTVSLGTKSIKGLKLA-DGT--LITCV 122 (412)
T ss_pred cchhhhhhhheeecCCceeEeec---cccCcccccccccCCcc---ccccccccccccccccccchhhc-CCE--EEEEe
Confidence 345578888888766553 3333 24566677776662100 00111122334456677776653 344 77777
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eecC--CeEEEEEcccCCcCceeecce-------
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCE--SSVQFWDLRSMGKTNSIEHAH------- 210 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~iwd~~~~~~~~~~~~~~------- 210 (351)
.+|.+.+|....+......+..- .....+..+.-++..+++++ |+.. ..+.+||+++.+.+..-+...
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred cCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 78999999988544221111111 00125667777777777666 6666 789999999875544433111
Q ss_pred ----eEEEEcCCC--CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 211 ----VRNVDYDTK--KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 211 ----v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
++++.|-+. . +.|++++.-+.+++||.+...+|+..+..-+.+++++...|++ +++++|..-+.+..||.+.
T Consensus 201 VPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred eeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC-cEEEEecccchhheecccC
Confidence 778888776 4 4799999999999999998788999999889999999999999 9999999999999999998
Q ss_pred CCCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 285 SNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+..+.. +++-.+.|+++..+|.++ +++++|-|+.|||+|+++
T Consensus 279 -------------------~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 279 -------------------GKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred -------------------ceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 666655 788889999999999999 999999999999999986
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=4.7e-16 Score=122.28 Aligned_cols=237 Identities=14% Similarity=0.119 Sum_probs=159.4
Q ss_pred ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC----
Q 018700 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE---- 142 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d---- 142 (351)
...+++|+.|...++++ .|.-.+||+.+ ..+.....+.+.+.+.-+..---.+.+.++++.+
T Consensus 7 ~~lsvs~NQD~ScFava-----~~~Gfriyn~~---------P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky 72 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVA-----TDTGFRIYNCD---------PFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKY 72 (346)
T ss_pred ceeEEEEccCCceEEEE-----ecCceEEEecC---------chhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCC
Confidence 44569999998877775 56679999987 2232222222222211111111223334555432
Q ss_pred --CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc-cCCcCceeecc---e-eEEEE
Q 018700 143 --ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIEHA---H-VRNVD 215 (351)
Q Consensus 143 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~---~-v~~~~ 215 (351)
..|.|||=........+. ...+|.++.+.++ .|++. .++.|++|... +.+.+..+... . ..+++
T Consensus 73 ~pNkviIWDD~k~~~i~el~------f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 73 PPNKVIIWDDLKERCIIELS------FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred CCceEEEEecccCcEEEEEE------eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 579999943322222222 2338999999864 34443 46789999987 44555555422 2 55555
Q ss_pred cCCCCCcEEEEecCCCeEEEEecccCCc-ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe-EEEEEcCCCCCCCCCCc
Q 018700 216 YDTKKKHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSE 293 (351)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~ 293 (351)
-......+..-|-.-|.|+|-|+..... +...+.+|.+.|.+++.+-+| .++||+|..|+ |||||..+
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~--------- 213 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTED--------- 213 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCC---------
Confidence 4444442333455679999999986332 357788999999999999999 99999999995 79999999
Q ss_pred ccccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 294 SLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
++++..+.- ....|.+++|||+.. +||.+|+.|+|.|+.+...
T Consensus 214 ----------g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 214 ----------GTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ----------CcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecC
Confidence 888888753 235699999999999 8999999999999998753
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.5e-14 Score=116.13 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=181.8
Q ss_pred CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC
Q 018700 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103 (351)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~ 103 (351)
++.+...+.+|+ .+...+++.++..+ ......-.-.|-.+-|+. ..++.+. -.....+++.++.
T Consensus 13 ~Nqd~~~lsvGs-----~~Gyk~~~~~~~~k---~~~~~~~~~~IvEmLFSS--SLvaiV~--~~qpr~Lkv~~~K---- 76 (391)
T KOG2110|consen 13 FNQDSTLLSVGS-----KDGYKIFSCSPFEK---CFSKDTEGVSIVEMLFSS--SLVAIVS--IKQPRKLKVVHFK---- 76 (391)
T ss_pred eccceeEEEccC-----CCceeEEecCchHH---hhcccCCCeEEEEeeccc--ceeEEEe--cCCCceEEEEEcc----
Confidence 444555555553 34455566555433 111111122344445553 3333332 1333568888887
Q ss_pred CCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcE
Q 018700 104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183 (351)
Q Consensus 104 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 183 (351)
....+..+ ....+|.+|.++.+. +++.- ...|+|||+++-.....+.... .+...+.+++.++.+.++
T Consensus 77 -----k~~~ICe~-~fpt~IL~VrmNr~R---LvV~L-ee~IyIydI~~MklLhTI~t~~--~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 77 -----KKTTICEI-FFPTSILAVRMNRKR---LVVCL-EESIYIYDIKDMKLLHTIETTP--PNPKGLCALSPNNANCYL 144 (391)
T ss_pred -----cCceEEEE-ecCCceEEEEEccce---EEEEE-cccEEEEecccceeehhhhccC--CCccceEeeccCCCCceE
Confidence 34444444 345689999988652 44543 3459999999755444443332 233357777777777788
Q ss_pred EEee--cCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCe-EEEEecccCCcceeEeeCC--CCce
Q 018700 184 VAAT--CESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGH--THWT 255 (351)
Q Consensus 184 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~~v 255 (351)
+.-+ ..|.|.+||+.+-+++..+. .| +.+++|+++|. +||++++.|+ ||||.+.+ ++.+.+|..- ...|
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~I 221 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSI 221 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEE
Confidence 8643 57999999999999988888 66 99999999998 9999999986 89999987 7677777632 2458
Q ss_pred eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc------------------cccccceeeccccc--
Q 018700 256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ------------------RANSLLNSYSDYED-- 315 (351)
Q Consensus 256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~-- 315 (351)
.+++|+|++ .+|++.+..++|++|.+.....+.........++.. ...+...+.+....
T Consensus 222 ySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~ 300 (391)
T KOG2110|consen 222 YSLSFSPDS-QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGR 300 (391)
T ss_pred EEEEECCCC-CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCc
Confidence 899999999 899999999999999987643221111111111110 00001111111111
Q ss_pred -eEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 316 -SVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 316 -~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
.+..+.=.+..+ .+..++.||.++.|.++..
T Consensus 301 ~~~~~l~~~~~~~-~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 301 KNICSLSSIQKIP-RVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred cceEEeeccCCCC-EEEEEEcCCeEEEEEcCCC
Confidence 222333234566 7888899999999999764
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=4.9e-16 Score=141.81 Aligned_cols=281 Identities=17% Similarity=0.178 Sum_probs=178.6
Q ss_pred EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018700 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD 135 (351)
Q Consensus 56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 135 (351)
.....+..|...|..++.++....++++ |+.||+|++|++.+..+.. ...+...++.....++.++...+.+..
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~Fvs---gS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~~~~~- 1112 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVS---GSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCGNGDQ- 1112 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEE---ecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEeccCCCe-
Confidence 4457788899999999998877445554 5899999999998543321 123344455445778999999999986
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccc----cccccCcccceeeeEECCCCC--cEEEeecCCeEEEEEcccCCcCceeec-
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQ----SKQSSGMLHYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEH- 208 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~- 208 (351)
+++++.||.|.+.+++-........ ..........+...++....+ .++.+...+.|..||++.......++.
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 6666899999999998521111100 000001011222334433322 466777889999999998776655542
Q ss_pred -ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCC--CeEEEee--CCCeEEEE
Q 018700 209 -AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYD--GFILSAG--TDSTVNLW 280 (351)
Q Consensus 209 -~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~s~~--~dg~i~iw 280 (351)
.| |++++.+|.+. +++.|+..|.+.+||+|- +.++..+. ++..++..+..+|-.+ ...++++ ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 33 99999999998 899999999999999996 76777765 4567888888877553 4555544 47789999
Q ss_pred EcCCCCCCCCCCcccccCCcccccccce-eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 281 LVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
++..+.+......+ +..+......+.. .-+.+.-......+...+. ++.+|+.|..||.||...
T Consensus 1271 n~~~g~~~~vl~~s-~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWAS-DGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ecccCcceEEEEcC-CCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCC
Confidence 99985433221111 0000000000000 0012222222333333344 899999999999999864
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.3e-17 Score=135.55 Aligned_cols=297 Identities=16% Similarity=0.224 Sum_probs=220.2
Q ss_pred eccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCC--CceEEEEeec
Q 018700 10 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD--QRIFSTVFST 87 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~~~~~~~ 87 (351)
+.|+....++..+.++..+..++.|+ .+..+.+|++......+ ....+|...|....|.|.. +.++. +
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgS----DD~~vv~WdW~~~~~~l--~f~SGH~~NvfQaKFiP~s~d~ti~~----~ 205 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGS----DDLQVVVWDWVSGSPKL--SFESGHCNNVFQAKFIPFSGDRTIVT----S 205 (559)
T ss_pred hcccCCCCccceeeecccCceeeccC----ccceEEeehhhccCccc--ccccccccchhhhhccCCCCCcCcee----c
Confidence 34555566788888888888887764 57888889988765433 4556899999999998853 34444 4
Q ss_pred CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC-
Q 018700 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG- 166 (351)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~- 166 (351)
+.||.+++=.+.. ....+....+..|.++|..++.-|+..+.+++++.|+.+.-+|+........+.......
T Consensus 206 s~dgqvr~s~i~~------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 206 SRDGQVRVSEILE------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cccCceeeeeecc------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999988763 112233456778999999999999999888888999999999998765544444222111
Q ss_pred cccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCc------Cceeecce--------eEEEEcCCCCCcEEEEecCCC
Q 018700 167 MLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH--------VRNVDYDTKKKHLLVTAADES 231 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg 231 (351)
..-..++++.+|... .+++++.|-.+++||.+.-.. +..+...| |++++|+.++.. +.+...|-
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-lLaSYnDe 358 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-LLASYNDE 358 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-eeeeeccc
Confidence 012578889999776 577888999999999875321 22332222 999999988874 45567778
Q ss_pred eEEEEecccC-C----------cceeE-eeCCCC--ceeEEEe-cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018700 232 GIHLWDLRML-K----------APIQE-LPGHTH--WTWAVCC-NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (351)
Q Consensus 232 ~i~i~d~~~~-~----------~~~~~-~~~~~~--~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 296 (351)
.|++|.-... + ..+.. +++|.. .|..+-| -|.. .|+++|+.-|.|.||+-..
T Consensus 359 ~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t------------ 425 (559)
T KOG1334|consen 359 DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKT------------ 425 (559)
T ss_pred ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecch------------
Confidence 8999953321 1 12233 678864 4666665 6777 9999999999999999998
Q ss_pred cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
++.+..+.+-...|+||.-+|--+ +||+.|-|..|+||-.
T Consensus 426 -------~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 426 -------GEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred -------hHHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecC
Confidence 888888888767899999999999 9999999999999986
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.3e-15 Score=133.80 Aligned_cols=237 Identities=13% Similarity=0.147 Sum_probs=150.5
Q ss_pred EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018700 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (351)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 122 (351)
.|.+++++..+. ..+..+...+.+.+|+|+|+.|+.+... +.+..|.+|++.. ...+.+..+.+ .
T Consensus 180 ~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~-~g~~~i~i~dl~~-------G~~~~l~~~~~---~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLAN-------GAVRQVASFPR---H 244 (429)
T ss_pred eEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEec-CCCcEEEEEECCC-------CCeEEccCCCC---C
Confidence 555565554332 2234466789999999999998876422 2345788999872 12233333333 3
Q ss_pred eeEEEecCCCCCcEEEEecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-C--eEEEEEc
Q 018700 123 INCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-S--SVQFWDL 197 (351)
Q Consensus 123 v~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~ 197 (351)
+..+.|+|||+.++++...++ .|++||+.++.. ..+.. +...+....|+|+++.|+..+.+ + .|+++|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~-----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccC-----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 456899999997555544444 588999986432 22211 12256788999999998877653 4 4555566
Q ss_pred ccCCcCceeecce-eEEEEcCCCCCcEEEEecCC--CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018700 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD 274 (351)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 274 (351)
.+++......... .....|+|+|+.+++++..+ ..|.+||+.. +. ...+.. ........|+|+| .+|+.++.+
T Consensus 319 ~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~ 394 (429)
T PRK03629 319 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD-TFLDETPSIAPNG-TMVIYSSSQ 394 (429)
T ss_pred CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCC-CCCCCCceECCCC-CEEEEEEcC
Confidence 6654322222222 66789999999554544444 3588889875 33 344442 2234568899999 778777776
Q ss_pred Ce---EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 275 ST---VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 275 g~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
+. +.++++. +.....+..|...+...+|+|
T Consensus 395 ~~~~~l~~~~~~--------------------G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 395 GMGSVLNLVSTD--------------------GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCceEEEEEECC--------------------CCCeEECccCCCCcCCcccCC
Confidence 64 6666764 455566777777889999997
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=1.6e-16 Score=133.14 Aligned_cols=193 Identities=12% Similarity=0.207 Sum_probs=144.3
Q ss_pred CCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eecCCeEEEEEcccC-----C--
Q 018700 130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSM-----G-- 201 (351)
Q Consensus 130 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~-----~-- 201 (351)
|.+-. ++.+-.-|.|.+.|... ....+++.....-....++++.|-|.++.++. +-.+|.+++||..-- .
T Consensus 183 ~~g~d-llIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 183 PKGLD-LLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCcc-eEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 34443 67776678999988775 22222222221112348999999997766554 457899999976311 0
Q ss_pred ---------------------cCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018700 202 ---------------------KTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV 258 (351)
Q Consensus 202 ---------------------~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 258 (351)
++....... |+..+|+|||+ +||+.+.||.+||||..+ ...+..++.--+...|+
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCV 338 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccH-HHHHHHHHhhccceEEE
Confidence 011111111 88999999999 799999999999999987 55666666677889999
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC--------------
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-------------- 324 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------- 324 (351)
+|+||| +||++|++|..|.||.+.. .+.+..-++|..+|..++|.|
T Consensus 339 cWSPDG-KyIvtGGEDDLVtVwSf~e-------------------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~ 398 (636)
T KOG2394|consen 339 CWSPDG-KYIVTGGEDDLVTVWSFEE-------------------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGM 398 (636)
T ss_pred EEcCCc-cEEEecCCcceEEEEEecc-------------------ceEEEeccccccceeeEeecccccccccccccccc
Confidence 999999 9999999999999999998 888888899999999999983
Q ss_pred ---------------------C------------CCceEEEeeeCCeEEEeecCc
Q 018700 325 ---------------------R------------EPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 325 ---------------------~------------~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+ -.+.|.+.+.|-.+.+||+..
T Consensus 399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 0 124688889999999999975
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-15 Score=119.91 Aligned_cols=246 Identities=15% Similarity=0.214 Sum_probs=154.6
Q ss_pred eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018700 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP 99 (351)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~ 99 (351)
..+++++....|++++ .+..|++++-+.... .......+..|.+++|-|.+..-++. +-.+-|.+|...
T Consensus 102 r~~aWhqH~~~fava~----nddvVriy~ksst~p---t~Lks~sQrnvtclawRPlsaselav----gCr~gIciW~~s 170 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVAT----NDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAWRPLSASELAV----GCRAGICIWSDS 170 (445)
T ss_pred eeEeechhhhhhhhhc----cCcEEEEeccCCCCC---ceecchhhcceeEEEeccCCcceeee----eecceeEEEEcC
Confidence 3344555666777764 356676666554221 12222345799999999987665554 345679999987
Q ss_pred cccCCCC-----CCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceee
Q 018700 100 ELYGQLN-----SPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173 (351)
Q Consensus 100 ~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 173 (351)
...+..- ......+....+| .+|++++|++||.. ++++ -.|..|.|||.+++...... ... ...+.-
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~gsssi~iWdpdtg~~~pL~-~~g----lgg~sl 243 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASFGSSSIMIWDPDTGQKIPLI-PKG----LGGFSL 243 (445)
T ss_pred cccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE-EeecccCcceEEEEcCCCCCccccc-ccC----CCceee
Confidence 4322110 0011122233445 68999999999995 4444 56899999999986544333 111 126888
Q ss_pred eEECCCCCcEEEeecCCeEEEEEcccCC-cCc-eeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCC---------
Q 018700 174 GAWDPHDVNAVAATCESSVQFWDLRSMG-KTN-SIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--------- 242 (351)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------- 242 (351)
+.|+||+.+|++++-|+..++|...... ... ....+.|...+|+|+|+++|++.+....++-.......
T Consensus 244 LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 244 LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred EEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence 9999999999999999999999654332 222 22222399999999999888877765544433222100
Q ss_pred ---cceeEe------eC---CCCceeEEEecCCCCCeEEEeeCCC--------eEEEEEcCC
Q 018700 243 ---APIQEL------PG---HTHWTWAVCCNPEYDGFILSAGTDS--------TVNLWLVST 284 (351)
Q Consensus 243 ---~~~~~~------~~---~~~~v~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~ 284 (351)
.++..+ .+ -.+.+.+++|+|.| .+|++.-..+ .|.+||.+.
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 000011 01 13568899999999 8888876543 366778776
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=6e-16 Score=122.33 Aligned_cols=240 Identities=14% Similarity=0.194 Sum_probs=164.7
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
-+.|.-|.|..+..+++++. ..++.|.+|++. +.+-...+....+++.+++|+|+|++++.++.-+-.
T Consensus 48 ldki~yieW~ads~~ilC~~---yk~~~vqvwsl~---------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVA---YKDPKVQVWSLV---------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HHHhhheeeeccceeeeeee---eccceEEEEEee---------cceeEEEeccCCCcceeeeECCCcceEeeeecceeE
Confidence 46788899999999888875 789999999998 556666777788899999999999987777788999
Q ss_pred EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C----------------------------------
Q 018700 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E---------------------------------- 189 (351)
Q Consensus 145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------------------------------- 189 (351)
|.+|.+.+......... ...+..++|+|+|++.+..+. |
T Consensus 116 iTVWSL~t~~~~~~~~p------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 116 ITVWSLNTQKGYLLPHP------KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred EEEEEeccceeEEeccc------ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 99999986322111111 114577778888776655542 1
Q ss_pred -CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-------------------------
Q 018700 190 -SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK------------------------- 242 (351)
Q Consensus 190 -~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------- 242 (351)
+.+.+||.--.-.+.....+- +..++|+|.++ ++++|+.|+.+|+.+--+.+
T Consensus 190 g~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 190 GNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred CcEEEEecchhhheeeeeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 223445532222222233222 88999999998 89999999988775431110
Q ss_pred ----------------------------------cceeEee------CCCCceeEEEecCCCCCeEEEeeC--CCeEEEE
Q 018700 243 ----------------------------------APIQELP------GHTHWTWAVCCNPEYDGFILSAGT--DSTVNLW 280 (351)
Q Consensus 243 ----------------------------------~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iw 280 (351)
..+..++ ...-.+..++|++|. .+++|-.. -+.+-+|
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~W 347 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLW 347 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEE
Confidence 0001111 112245679999998 88887654 3478999
Q ss_pred EcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
|++. .++...+ ....+|....|+|..+ .|+.+.....+++|...
T Consensus 348 dlq~-------------------l~l~avL-iQk~piraf~WdP~~p-rL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 348 DLQN-------------------LKLHAVL-IQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPS 391 (447)
T ss_pred echh-------------------hhhhhhh-hhccceeEEEeCCCCc-eEEEEcCCceEEEEcCC
Confidence 9997 4544444 3456799999999888 56666667789999865
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=1.1e-14 Score=124.40 Aligned_cols=273 Identities=10% Similarity=0.097 Sum_probs=166.6
Q ss_pred CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
..++.+.+++..... . ...+......-..+.|+||+++++++ +.|+.|.++|+. +.+.+.+++.
T Consensus 13 ~~~~~v~viD~~t~~--~-~~~i~~~~~~h~~~~~s~Dgr~~yv~----~rdg~vsviD~~---------~~~~v~~i~~ 76 (369)
T PF02239_consen 13 RGSGSVAVIDGATNK--V-VARIPTGGAPHAGLKFSPDGRYLYVA----NRDGTVSVIDLA---------TGKVVATIKV 76 (369)
T ss_dssp GGGTEEEEEETTT-S--E-EEEEE-STTEEEEEE-TT-SSEEEEE----ETTSEEEEEETT---------SSSEEEEEE-
T ss_pred cCCCEEEEEECCCCe--E-EEEEcCCCCceeEEEecCCCCEEEEE----cCCCeEEEEECC---------cccEEEEEec
Confidence 456888888765532 2 23444333333457899999998886 578999999998 6778888865
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc--CcccceeeeEECCCCCcEEEee-cCCeEEEE
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS--GMLHYLSGGAWDPHDVNAVAAT-CESSVQFW 195 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw 195 (351)
.. ...+++++++|++++++....+.+.++|..+.+....+...... .....+.++..+|..+.+++.- ..+.|.+.
T Consensus 77 G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 77 GG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred CC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 44 46789999999975555577899999999876554443322211 1233677888888888666654 45888888
Q ss_pred EcccCCcCc--eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----------------------------
Q 018700 196 DLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA----------------------------- 243 (351)
Q Consensus 196 d~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------------- 243 (351)
|....+.+. .+..+. .....|+|++++++++...+..|-++|.++.+.
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence 877654332 333333 889999999997777666677888888765210
Q ss_pred -------------------------ceeEeeCCCCceeEEEecCCCCCeEEEe----eCCCeEEEEEcCCCCCCCCCCcc
Q 018700 244 -------------------------PIQELPGHTHWTWAVCCNPEYDGFILSA----GTDSTVNLWLVSTSNHDELPSES 294 (351)
Q Consensus 244 -------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~ 294 (351)
.++++.....+ ..+..+|++ +++... ...++|.++|.++
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~t---------- 303 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKT---------- 303 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCG----------
T ss_pred ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcC----------
Confidence 11111211122 345668888 777766 4457899999998
Q ss_pred cccCCcccccccceeecccc-ceEEEEEeCCCCCceEEEeeeCC-eEEEeecCcccc
Q 018700 295 LVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDG-RVVVESVKPFLS 349 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg-~v~vw~~~~~~~ 349 (351)
.+.+.++.... ..+..+.|+++|+.+.+|...++ .|.+||..+...
T Consensus 304 ---------l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 304 ---------LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp ---------TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred ---------cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 66666664322 34889999999997777777666 899999887543
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=122.36 Aligned_cols=240 Identities=17% Similarity=0.244 Sum_probs=165.3
Q ss_pred ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc------
Q 018700 29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY------ 102 (351)
Q Consensus 29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~------ 102 (351)
.|++.|+ +.+.+.+|.+.......... ..|...|+.+.--|++ .+.+- +.|..+.+|++....
T Consensus 26 ~rL~sg~----~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~d-~l~tq----gRd~~L~lw~ia~s~~i~i~S 94 (323)
T KOG0322|consen 26 ERLMSGL----SVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPND-SLDTQ----GRDPLLILWTIAYSAFISIHS 94 (323)
T ss_pred hhhhccc----ccceEEEEEeecCccchhhh--hhccceeeceeecCCc-chhhc----CCCceEEEEEccCcceEEEee
Confidence 3455443 45788888888764432221 1467889999888874 45453 799999999987510
Q ss_pred ---------------CCCCC-------------------Ccceeeeee----eccccceeEEEecC-CCCCc-EEEEecC
Q 018700 103 ---------------GQLNS-------------------PQLERIAAL----DAHVGKINCVLWWS-SGRHD-KLVSIDE 142 (351)
Q Consensus 103 ---------------~~~~~-------------------~~~~~~~~~----~~h~~~v~~~~~~~-~~~~~-~~~~~~d 142 (351)
+.... +....+... ....+.++|..+.. ++.++ ++++..+
T Consensus 95 i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEs 174 (323)
T KOG0322|consen 95 IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYES 174 (323)
T ss_pred eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccC
Confidence 00000 000000000 01234566766533 33433 4455789
Q ss_pred CcEEEEEcCCCCCCccccc-----ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC--c--Cceeecce--e
Q 018700 143 ENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--K--TNSIEHAH--V 211 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~--~~~~~~~~--v 211 (351)
|.|.+||+.++.....+.. .....|..+|.++.+.+.-..=+.++.+..+..|.+.... . ...+...+ +
T Consensus 175 ghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv 254 (323)
T KOG0322|consen 175 GHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV 254 (323)
T ss_pred CeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCc
Confidence 9999999997643332221 1234577799999998766666777888889999887542 1 12222223 9
Q ss_pred EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEc
Q 018700 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLV 282 (351)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 282 (351)
..+..-||++ ++++++-|+.||+|..++ .+++..++-|...|++++|+|+. .++|+++.|++|.+|++
T Consensus 255 ~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 255 SGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEccCCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 9999999999 999999999999999998 67999999999999999999998 89999999999999986
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.3e-15 Score=120.40 Aligned_cols=248 Identities=13% Similarity=0.163 Sum_probs=157.5
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCc
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
-.+..++|++.--.++++ ..|..|++|+-. . .....++ .....|+|++|-|.+...+++++. +-
T Consensus 99 ~dlr~~aWhqH~~~fava----~nddvVriy~ks---------s-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~g 163 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVA----TNDDVVRIYDKS---------S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AG 163 (445)
T ss_pred cceeeEeechhhhhhhhh----ccCcEEEEeccC---------C-CCCceecchhhcceeEEEeccCCcceeeeeec-ce
Confidence 466778999855555553 688899999966 2 3333332 235679999999988765666654 57
Q ss_pred EEEEEcCCCCCCccc---------ccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce--eE
Q 018700 145 IFLWSLDCSNKNAQV---------QSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH--VR 212 (351)
Q Consensus 145 v~iwd~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~--v~ 212 (351)
|.+|........... .....++| .+|++++|++||..+++++ .+..|.|||..++..+.....+- +.
T Consensus 164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS 242 (445)
T ss_pred eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence 999987642221111 11123455 4899999999999999887 67899999999987665553222 89
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 292 (351)
-+.|+||+. +|+++.-|+..++|.........+-.. -.+.|...+|+|+|..+|++.+... ++|.+...+......
T Consensus 243 lLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 243 LLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFL 318 (445)
T ss_pred eEEEcCCCC-EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCcccc
Confidence 999999999 677788999999996554232222222 3458999999999966666666554 455555422211111
Q ss_pred cccccCC--cccccccceeecc---ccceEEEEEeCCCCCceEEEee
Q 018700 293 ESLVESP--NQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 293 ~~~~~~~--~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~ 334 (351)
+..+.-. .-.....+....+ -.+++.+++|.|.|. +||+.-
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~f 364 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIF 364 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEE
Confidence 1000000 0000011111111 135688999999999 666654
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-14 Score=128.11 Aligned_cols=296 Identities=13% Similarity=0.146 Sum_probs=200.1
Q ss_pred eeecCCCCcceEEEeeeeeCCCCEEEEEEeCC-CCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018700 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSS-GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (351)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (351)
.....++....++.| ..+|+|.+|+=.. +........+-=|...|.+++|+++|.+|++ ||.++.+.+|.+
T Consensus 209 t~~~~spn~~~~Aa~----d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlS----GG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 209 TCVALSPNERYLAAG----DSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLS----GGREGVLVLWQL 280 (792)
T ss_pred eeEEeccccceEEEe----ccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEee----cccceEEEEEee
Confidence 334455555555554 3568898887554 3444455666668999999999999999999 589999999999
Q ss_pred ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc------ccCccccee
Q 018700 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ------SSGMLHYLS 172 (351)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~~~~~v~ 172 (351)
+ +.+ ..-+..-.++|..+.++||+.. ......|+.|.+....+......+.... ......-.+
T Consensus 281 ~---------T~~-kqfLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 281 E---------TGK-KQFLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred c---------CCC-cccccccCCeeEEEEEcCCCCe-EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 8 333 3345556789999999999994 4455679999998875432211111100 111233567
Q ss_pred eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-----------e--eEEEEcCCCCCcEEEEec--------CC-
Q 018700 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-----------H--VRNVDYDTKKKHLLVTAA--------DE- 230 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~--v~~~~~~~~~~~~l~~~~--------~d- 230 (351)
.++++|--+.++..+..+.|.+||+-+.+.+..+... + +..++.+..|. +++|.- .|
T Consensus 350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs-~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS-WMATLEARIDKFNFFDG 428 (792)
T ss_pred eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce-EEEEeeeeehhhhccCc
Confidence 7889997777888889999999999887766554411 1 77777888876 677654 22
Q ss_pred -CeEEEEecccCCcc----eeEeeCCCCceeEEEecCCCCC-eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018700 231 -SGIHLWDLRMLKAP----IQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (351)
Q Consensus 231 -g~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
-.+++|......+- ......|...+...++.+.-+. ..++++.||.+++|-+...+.- .+....+
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~---------~k~~s~W 499 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI---------YKKSSNW 499 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc---------CcCccce
Confidence 35888887642221 1122367776666665443323 8899999999999988541100 0000114
Q ss_pred ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+...-.-|..++++++|+.||. +++++.|+.|.+||..+
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEeeeeccccCcccchhhcCCCc--EEEEecCCEEEEecCCC
Confidence 44443344788899999999997 66777899999999876
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=132.22 Aligned_cols=229 Identities=11% Similarity=0.202 Sum_probs=158.4
Q ss_pred cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE-cccccCCCCCCcceeeeeeecccccee-EEEecC------CCCC
Q 018700 63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ-IPELYGQLNSPQLERIAALDAHVGKIN-CVLWWS------SGRH 134 (351)
Q Consensus 63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~-~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~------~~~~ 134 (351)
.|...|.++.|+.+...+.++ .|..+.+|. +... ...+ +.-....+. .+..-+ .+..
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-----dDh~~~~~~~~~~~--------s~~~--~~~p~df~pt~~h~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-----DDHQIFKWSDVSRD--------SVEV--AKLPDDFVPTDMHLGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccceEEEec-----cCceEEEeecccch--------hhhh--hhCCcccCCccccccccccCCCCCcc
Confidence 466777899999877777663 566655554 4321 0111 111111110 110101 1223
Q ss_pred cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce-eE
Q 018700 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VR 212 (351)
Q Consensus 135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~-v~ 212 (351)
.++.++.||.+.+.+-. .+..... ..|...+.+-.|+|+|.-|++++.||.|++|.-. |-...++. .+. |.
T Consensus 77 ~~~i~s~DGkf~il~k~--~rVE~sv----~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS--ARVERSI----SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEeccc--chhhhhh----hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeE
Confidence 47777889999887654 3333332 2566789999999999999999999999999854 43322222 223 99
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 292 (351)
|++|.|+...++++.+. .+.|=-+.. ...+...+.|.+-|.++.|++.. .++++|+.|-..++||..
T Consensus 150 c~~W~p~S~~vl~c~g~--h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~--------- 216 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQGG--HISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ--------- 216 (737)
T ss_pred EEEECCCCCceEEecCC--eEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeeccc---------
Confidence 99999999877765554 555555554 34566788999999999999999 999999999999999997
Q ss_pred cccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEE
Q 018700 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVV 340 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 340 (351)
+..+..-..|+-+|++++|.|+ . .++.++. +++|
T Consensus 217 -----------G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R 250 (737)
T KOG1524|consen 217 -----------GANLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTAR 250 (737)
T ss_pred -----------CcccccCChhccceeeeeeccc-c-ceeeeee-eeee
Confidence 6788888899999999999999 5 6777764 3444
No 217
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.1e-15 Score=130.51 Aligned_cols=241 Identities=11% Similarity=0.127 Sum_probs=171.7
Q ss_pred eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC--cEEEEecCCcEE
Q 018700 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH--DKLVSIDEENIF 146 (351)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~~d~~v~ 146 (351)
....|++|++.++.. .+..|.||... ++.++..+..|..+++.+.+.|.... .++.++.||.|+
T Consensus 20 ~~avfSnD~k~l~~~-----~~~~V~VyS~~---------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC-----TGNFVKVYSTA---------TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR 85 (792)
T ss_pred cccccccCCcEEEEe-----eCCEEEEEecc---------hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEE
Confidence 345789999999886 46699999988 78899999999999999999987763 344668899999
Q ss_pred EEEcCCCCCCccccccc----------ccC------------------------cc-------------------cceee
Q 018700 147 LWSLDCSNKNAQVQSKQ----------SSG------------------------ML-------------------HYLSG 173 (351)
Q Consensus 147 iwd~~~~~~~~~~~~~~----------~~~------------------------~~-------------------~~v~~ 173 (351)
+||...+.....+.... ... +. ..-..
T Consensus 86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 86 VWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred EecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99987643221111000 000 00 00122
Q ss_pred eEECCCCCcEEEeecCCeEEEEEcccCCcC---ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc---CCcc
Q 018700 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM---LKAP 244 (351)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~ 244 (351)
+.+++.+.+ .....+..+.+|....+... ......| +++.+++|.++ ++++|..||.|.+|.--. ....
T Consensus 166 I~~~~~ge~-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 166 IVDNNSGEF-KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred EEEcCCceE-EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccccccccc
Confidence 333333332 22233556778887764411 1111223 78999999999 899999999999996321 1234
Q ss_pred eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
.+.+.-|...|++++|+++| .+|++|+..+.+.+|.+.+ ++ ..-++--.++|..+.++|
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T-------------------~~-kqfLPRLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLET-------------------GK-KQFLPRLGSPILHIVVSP 302 (792)
T ss_pred ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecC-------------------CC-cccccccCCeeEEEEEcC
Confidence 56777899999999999999 9999999999999999998 33 223344467899999999
Q ss_pred CCCceEEEeeeCCeEEEeecCcc
Q 018700 325 REPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
|+. +.+....|+.|.+-...++
T Consensus 303 ds~-~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 303 DSD-LYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred CCC-eEEEEecCceEEEEeccch
Confidence 999 7888888999999887654
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=8.8e-15 Score=129.21 Aligned_cols=224 Identities=11% Similarity=0.121 Sum_probs=141.4
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+..+...+.+.+|+|+++.|+.+.+. +....|.+|++. ..+. ..+..+.+...+..|+|+|+.++++.
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~-~~~~~l~~~dl~---------~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFE-RGRSAIYVQDLA---------TGQR-ELVASFRGINGAPSFSPDGRRLALTL 266 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecC-CCCcEEEEEECC---------CCCE-EEeccCCCCccCceECCCCCEEEEEE
Confidence 345677889999999999998876422 234579999987 2222 22333344556789999999755555
Q ss_pred ecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CC--eEEEEEcccCCcCceeecce-eEE
Q 018700 140 IDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES--SVQFWDLRSMGKTNSIEHAH-VRN 213 (351)
Q Consensus 140 ~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~-v~~ 213 (351)
+.++ .|++||+.++.. ..+. .+.......+|+|+++.|+.++. ++ .|+++|+.+++.......+. ...
T Consensus 267 s~~g~~~Iy~~d~~~g~~-~~lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~ 340 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQL-TRLT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR 340 (433)
T ss_pred eCCCCceEEEEECCCCCe-EECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence 5544 699999986532 2221 11223467899999999887764 44 46667776665332222233 557
Q ss_pred EEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC-C--CeEEEEEcCCCCCC
Q 018700 214 VDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHD 288 (351)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~ 288 (351)
++|+|+|++++++...++ .|.+||+.. ++ ...+. +........|+|+| ++++..+. . +.|.+++...
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~-~~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g---- 412 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLST-GS-VRTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDG---- 412 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCC-CC-eEECC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC----
Confidence 899999995444443333 699999875 43 33443 33345678999999 66555444 2 3566667643
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
.....+..+...+...+|+|
T Consensus 413 ----------------~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 ----------------RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ----------------CceEEcccCCCCCCCCccCC
Confidence 34444544555677788887
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=2e-15 Score=117.49 Aligned_cols=151 Identities=19% Similarity=0.278 Sum_probs=107.6
Q ss_pred eEEEecCCCCCcEEEEec---------CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeE
Q 018700 124 NCVLWWSSGRHDKLVSID---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSV 192 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i 192 (351)
..+.|+|+|.++++.... -+...+|.++............. ..+|.+++|+|+++.+++.. .+..|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEECcCCCEEEEEEccCCccc
Confidence 457899999976665541 13456676654333333332221 23699999999999876553 56799
Q ss_pred EEEEcccCCcCceeecceeEEEEcCCCCCcEEEEec---CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018700 193 QFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (351)
Q Consensus 193 ~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 269 (351)
.+||++ ++.+..+....++.+.|+|+|+ ++++++ ..|.|.+||.++ .+.+...+ | ..++.++|+|+| ++|+
T Consensus 86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdG-r~~~ 159 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDG-RYLA 159 (194)
T ss_pred EEEcCc-ccEeEeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCC-CEEE
Confidence 999997 5666666633388999999999 555554 357899999996 55566554 3 357899999999 8888
Q ss_pred EeeC------CCeEEEEEcC
Q 018700 270 SAGT------DSTVNLWLVS 283 (351)
Q Consensus 270 s~~~------dg~i~iwd~~ 283 (351)
++.. |+.++||+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEeccceeccccEEEEEec
Confidence 8764 7889999986
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=7.4e-15 Score=129.70 Aligned_cols=216 Identities=13% Similarity=0.109 Sum_probs=133.6
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML 168 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 168 (351)
..|.+||.. +.....+..+...+.+.+|+|+++.+++++. .+..|++||+.++... .+ . ...+
T Consensus 184 ~~l~i~D~~----------g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l-~-~~~g-- 248 (433)
T PRK04922 184 YALQVADSD----------GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LV-A-SFRG-- 248 (433)
T ss_pred EEEEEECCC----------CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Ee-c-cCCC--
Confidence 458888875 2333455567788999999999997444442 2357999999865332 11 1 1112
Q ss_pred cceeeeEECCCCCcEEEe-ecCC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCe--EEEEecccCC
Q 018700 169 HYLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLK 242 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~ 242 (351)
...+.+|+|+++.++.. +.++ .|++||+.+++......... ....+|+|+|+.++++...+|. |+++|+.. +
T Consensus 249 -~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g 326 (433)
T PRK04922 249 -INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-G 326 (433)
T ss_pred -CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C
Confidence 34578999999987654 4444 69999998876433222112 5678999999955555545555 55566654 3
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCC-C--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTD-S--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (351)
....+..+......++|+|+| .+|+..+.+ + .|.+||+.. ++.. .+.. ......
T Consensus 327 -~~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~-------------------g~~~-~Lt~-~~~~~~ 383 (433)
T PRK04922 327 -SAERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLST-------------------GSVR-TLTP-GSLDES 383 (433)
T ss_pred -CeEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCC-------------------CCeE-ECCC-CCCCCC
Confidence 234443334445578999999 666654433 2 689999876 3332 2221 223456
Q ss_pred EEeCCCCCceEEEeeeC--CeEEEeecCc
Q 018700 320 LAWSSREPWIFASLSYD--GRVVVESVKP 346 (351)
Q Consensus 320 ~~~~~~~~~~l~s~~~d--g~v~vw~~~~ 346 (351)
..|+|+|+.++++.... +.|.++++..
T Consensus 384 p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 384 PSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 78999999444444332 3566777653
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.6e-13 Score=108.27 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=177.6
Q ss_pred ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcc--eeeeeeCCCCCceEEEEeecCC-----cceEE
Q 018700 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE--IWDLSSCPFDQRIFSTVFSTGE-----SYGAA 94 (351)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~~~~~~~~~-----d~~i~ 94 (351)
+.++.|...|++|+ +...++++..+-......+ .+.+. +..+-|- -++|+.+. |+. ...|.
T Consensus 11 vs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~---~~~~G~~~veMLfR--~N~laLVG--Gg~~pky~pNkvi 78 (346)
T KOG2111|consen 11 VSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQ---FIDGGFKIVEMLFR--SNYLALVG--GGSRPKYPPNKVI 78 (346)
T ss_pred EEEccCCceEEEEe-----cCceEEEecCchhhhhhhc---cccCchhhhhHhhh--hceEEEec--CCCCCCCCCceEE
Confidence 67788888999886 5677888888843322111 12222 2222222 33454442 332 24699
Q ss_pred EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018700 95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (351)
|||=. ..+++.++ ....+|.++.+.++ .++.-..+.|+||...+.-+....+.... ....+.++
T Consensus 79 IWDD~---------k~~~i~el-~f~~~I~~V~l~r~----riVvvl~~~I~VytF~~n~k~l~~~et~~--NPkGlC~~ 142 (346)
T KOG2111|consen 79 IWDDL---------KERCIIEL-SFNSEIKAVKLRRD----RIVVVLENKIYVYTFPDNPKLLHVIETRS--NPKGLCSL 142 (346)
T ss_pred EEecc---------cCcEEEEE-EeccceeeEEEcCC----eEEEEecCeEEEEEcCCChhheeeeeccc--CCCceEee
Confidence 99933 45666666 46789999999887 33334568999999985433333222221 01123333
Q ss_pred EECCCCCcEEEee-cCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCe-EEEEecccCCcceeEe
Q 018700 175 AWDPHDVNAVAAT-CESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQEL 248 (351)
Q Consensus 175 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~ 248 (351)
+-+.+...|+.-+ .-|.|.|-|+...+. ...+-.+| |.|++.+.+|. ++|+++..|+ |||||.++ +.++.++
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~-g~~l~E~ 220 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTED-GTLLQEL 220 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCC-CcEeeee
Confidence 3333333344433 569999999987655 22333366 99999999998 9999999986 89999998 7778887
Q ss_pred eC--CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc----c--cccccceeeccccceEEEE
Q 018700 249 PG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN----Q--RANSLLNSYSDYEDSVYGL 320 (351)
Q Consensus 249 ~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~v~~~ 320 (351)
.. ....|.+++|+|+. .+|+.+|..|+++||.++......... +.-..+. + .....+..+.-..+...-+
T Consensus 221 RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~~~~~~~-SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~ 298 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTENTEDES-SSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCII 298 (346)
T ss_pred ecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCCCCcccc-ccccccccccchhcccceeEEEEEccCCCcEEE
Confidence 62 34679999999999 999999999999999998633222111 0000000 0 0011122222234455667
Q ss_pred EeCCCCCceEEEeeeCCeEEEeec
Q 018700 321 AWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 321 ~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
+|-.+.. -++..+.||.-+-+.+
T Consensus 299 ~fg~~~n-svi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 299 AFGSETN-TVIAICADGSYYKFKF 321 (346)
T ss_pred EecCCCC-eEEEEEeCCcEEEEEe
Confidence 7877644 4556666787655444
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.6e-14 Score=126.37 Aligned_cols=217 Identities=8% Similarity=0.023 Sum_probs=137.3
Q ss_pred EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018700 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (351)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 122 (351)
.|.+++..... .+.+..|...+.+.+|+|+++.|+.+.+. ..+..|.+|++. .++. ..+..+.+.
T Consensus 183 ~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG~~lay~s~~-~g~~~i~~~dl~---------~g~~-~~l~~~~g~ 247 (435)
T PRK05137 183 RLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNRQEITYMSYA-NGRPRVYLLDLE---------TGQR-ELVGNFPGM 247 (435)
T ss_pred EEEEECCCCCC----cEEEecCCCCeEeeEECCCCCEEEEEEec-CCCCEEEEEECC---------CCcE-EEeecCCCc
Confidence 55555543322 13455688899999999999998877432 235689999987 2222 344456667
Q ss_pred eeEEEecCCCCCcEEEEecCCc--EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C--CeEEEEEc
Q 018700 123 INCVLWWSSGRHDKLVSIDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDL 197 (351)
Q Consensus 123 v~~~~~~~~~~~~~~~~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~ 197 (351)
+...+|+|+|+.++++.+.++. |++||+.++.. ..+.. +........|+||++.|+..+. + ..|+++|+
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~-----~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTD-----SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccC-----CCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 7889999999975555555554 77778875432 22211 2224567899999999887763 3 36888888
Q ss_pred ccCCcCceeecce-eEEEEcCCCCCcEEEEecCC--CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC-
Q 018700 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT- 273 (351)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~- 273 (351)
..++......... +....|+|+|+.++++.... ..|.+||+.. + ....+. ....+..+.|+|+| +.|+..+.
T Consensus 322 ~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG-~~i~~~~~~ 397 (435)
T PRK05137 322 DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNG-RVIMFFRQT 397 (435)
T ss_pred CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCC-CEEEEEEcc
Confidence 7654432222122 66789999999544444333 3678888753 2 233333 23356788999999 65554333
Q ss_pred C-----CeEEEEEcCC
Q 018700 274 D-----STVNLWLVST 284 (351)
Q Consensus 274 d-----g~i~iwd~~~ 284 (351)
. ..+.++|+..
T Consensus 398 ~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 398 PGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCCcceEEEEECCC
Confidence 2 2566777754
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.5e-14 Score=127.19 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=135.0
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML 168 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 168 (351)
..|.+||.+ +...+.+..+...+...+|+|||+.+++++. .+..+.+|++.++... .+.. ..+
T Consensus 179 ~~l~~~d~d----------g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~--~~~-- 243 (429)
T PRK03629 179 YELRVSDYD----------GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS--FPR-- 243 (429)
T ss_pred eeEEEEcCC----------CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccC--CCC--
Confidence 367788776 1223344556778999999999997554442 3457999999864322 2111 112
Q ss_pred cceeeeEECCCCCcEEEee-cCC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018700 169 HYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (351)
.+....|+|||+.|+... .++ .|++||+.+++......... +....|+|+|+.++++...++...+|.+......
T Consensus 244 -~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 244 -HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred -CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 345689999999888653 344 58999998876543332222 7889999999955455544555555543322223
Q ss_pred eeEeeCCCCceeEEEecCCCCCeEEEeeC-C--CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018700 245 IQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321 (351)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 321 (351)
...+..+........|+|+| .+|+..+. + ..|.+||+.. ++. ..+... .......
T Consensus 323 ~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~-------------------g~~-~~Lt~~-~~~~~p~ 380 (429)
T PRK03629 323 PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT-------------------GGV-QVLTDT-FLDETPS 380 (429)
T ss_pred eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCC-------------------CCe-EEeCCC-CCCCCce
Confidence 44554444556778999999 66665543 3 3578888876 332 222211 1234678
Q ss_pred eCCCCCceEEEeeeCCe---EEEeecCc
Q 018700 322 WSSREPWIFASLSYDGR---VVVESVKP 346 (351)
Q Consensus 322 ~~~~~~~~l~s~~~dg~---v~vw~~~~ 346 (351)
|+|||+ .|+..+.++. +.+++++.
T Consensus 381 ~SpDG~-~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 381 IAPNGT-MVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred ECCCCC-EEEEEEcCCCceEEEEEECCC
Confidence 999999 5666665553 67777653
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.4e-14 Score=128.10 Aligned_cols=216 Identities=10% Similarity=0.063 Sum_probs=136.7
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML 168 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 168 (351)
..|.++|.. +.....+..|...+.+.+|+|||+.+++++. .+..|++||+.++... .+ . .+.
T Consensus 182 ~~l~~~d~d----------g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~----~~~ 245 (435)
T PRK05137 182 KRLAIMDQD----------GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-G----NFP 245 (435)
T ss_pred eEEEEECCC----------CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-e----cCC
Confidence 367777765 2344556678889999999999997555542 3578999999865432 11 1 122
Q ss_pred cceeeeEECCCCCcEEEe-ecCC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCC
Q 018700 169 HYLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLK 242 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 242 (351)
..+...+|+|+|+.|+.. +.++ .|++||+.+++......... .....|+|+|+.++++...+| .|+++|+.. +
T Consensus 246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~ 324 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-S 324 (435)
T ss_pred CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-C
Confidence 256788999999987654 4444 57788988765433222222 667899999985444443444 577778764 3
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCC---CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (351)
..+.+..+...+....|+|+| ..|+....+ ..|.+||... +. ...+.. ...+..
T Consensus 325 -~~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~-------------------~~-~~~lt~-~~~~~~ 381 (435)
T PRK05137 325 -NPRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDG-------------------SG-ERILTS-GFLVEG 381 (435)
T ss_pred -CeEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCC-------------------Cc-eEeccC-CCCCCC
Confidence 345555445567778999999 666655432 3577788754 21 122221 123677
Q ss_pred EEeCCCCCceEEEeeeC-----CeEEEeecCc
Q 018700 320 LAWSSREPWIFASLSYD-----GRVVVESVKP 346 (351)
Q Consensus 320 ~~~~~~~~~~l~s~~~d-----g~v~vw~~~~ 346 (351)
+.|+|||+.++++.... ..+.++++..
T Consensus 382 p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 382 PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 89999999544444433 2577777654
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.7e-14 Score=125.77 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=136.3
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
+..+...+.+.+|+|+++.|+.+.+. .....|.+||+. .++. ..+....+.+.+..|+|+|+.++++.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~-~~~~~I~~~dl~---------~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFE-SKKPVVYVHDLA---------TGRR-RVVANFKGSNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEcc-CCCcEEEEEECC---------CCCE-EEeecCCCCccceEECCCCCEEEEEEc
Confidence 44677889999999999998876422 223469999987 3332 223333455678899999997555556
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CCeEEEEEc--ccCCcCceeecce-eEEEEc
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDL--RSMGKTNSIEHAH-VRNVDY 216 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~~~~~-v~~~~~ 216 (351)
.++...||.++........+.. +........|+|||+.|+..+. ++...+|.+ .+++.......+. ....+|
T Consensus 260 ~~g~~~Iy~~d~~~~~~~~lt~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 260 RDGNSQIYTVNADGSGLRRLTQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred cCCCceEEEEECCCCCcEECCC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 7777666655421111111111 1224566789999999887664 455666655 4443222221222 556889
Q ss_pred CCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCe--EEEEEcCCCCCCCCC
Q 018700 217 DTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDST--VNLWLVSTSNHDELP 291 (351)
Q Consensus 217 ~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~ 291 (351)
+|+|++++++...++ .|.+||+.. ++ ...+.. ......+.|+|+| ..|+..+ ..|. +.+.+..
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~-~~~lt~-~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~~~~-------- 403 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLAT-GQ-VTALTD-TTRDESPSFAPNG-RYILYATQQGGRSVLAAVSSD-------- 403 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCC-CC-eEEccC-CCCccCceECCCC-CEEEEEEecCCCEEEEEEECC--------
Confidence 999995444433333 699999876 43 333432 2345678999999 5555544 4443 3344442
Q ss_pred CcccccCCcccccccceeeccccceEEEEEeCCC
Q 018700 292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (351)
+.....+..+.+.+...+|+|-
T Consensus 404 ------------g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 ------------GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ------------CCceEEeecCCCCCCCCccCCC
Confidence 3444445455566778888873
No 226
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=121.79 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=134.5
Q ss_pred eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--CcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018700 114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS 191 (351)
Q Consensus 114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 191 (351)
+.+.+|.+.|.++.|+.++++ +++++.|..+++|.+...-. ..+.+......|...|.+++|......+++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345689999999999999884 56668899999999873211 111111112245678999999998999999999999
Q ss_pred EEEEEcccCCcCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe--eCCCCceeEEEecCCCC
Q 018700 192 VQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYD 265 (351)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 265 (351)
|...|+++.+.+..+.... |..+..+|... +|++.+.++.|.+||.|....+...+ .........+.|+|..+
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999998877776433 99999999975 89999999999999999744343333 23345678899999999
Q ss_pred CeEEEeeCCCeEEEEEcCCCC
Q 018700 266 GFILSAGTDSTVNLWLVSTSN 286 (351)
Q Consensus 266 ~~l~s~~~dg~i~iwd~~~~~ 286 (351)
.+|++.+..+-+.+||++...
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred eeEEeccccCCCCceeecccc
Confidence 999999999999999998753
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=5.2e-17 Score=133.64 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=165.4
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG 201 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 201 (351)
....+.++.+|.+ ++.++..|.|..+|..+......+.... .|.++.|..+.++++ ......++|||-. |.
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~E------tv~Dv~~LHneq~~A-VAQK~y~yvYD~~-Gt 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVME------TVRDVTFLHNEQFFA-VAQKKYVYVYDNN-GT 201 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhh------hhhhhhhhcchHHHH-hhhhceEEEecCC-Cc
Confidence 4567889999997 7778889999999999876655555444 799999987666554 4567899999955 55
Q ss_pred cCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEE
Q 018700 202 KTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280 (351)
Q Consensus 202 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 280 (351)
.+..+.... +..+.|-|.. ++|+++++.|.++--|+.. ++.+..+..-.+.+..++-+|-+ .++-+|...|+|.+|
T Consensus 202 ElHClk~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~-GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 202 ELHCLKRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVST-GKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLW 278 (545)
T ss_pred EEeehhhcCchhhhcccchh-heeeecccCCceEEEeech-hhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEec
Confidence 666665323 9999999988 4899999999999999998 77888888778889999999999 999999999999999
Q ss_pred EcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
...+ .+++..+-.|.++|.+|++.++|. +++|.|.|..++|||++.+.
T Consensus 279 SP~s-------------------kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 279 SPNS-------------------KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred CCCC-------------------cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccc
Confidence 9998 788888889999999999999999 89999999999999998753
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=8.3e-15 Score=113.99 Aligned_cols=148 Identities=16% Similarity=0.287 Sum_probs=107.1
Q ss_pred eeeEECCCCCcEEEeec----------CCeEEEEEcccC-CcCceeec--ce-eEEEEcCCCCCcEEEE-ecCCCeEEEE
Q 018700 172 SGGAWDPHDVNAVAATC----------ESSVQFWDLRSM-GKTNSIEH--AH-VRNVDYDTKKKHLLVT-AADESGIHLW 236 (351)
Q Consensus 172 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~-~~~~~~~~--~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~ 236 (351)
..+.|+|+|++|++-.. -+...+|.++.. .....+.. .. |.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999998776543 134556666432 23333332 22 9999999999854333 5567899999
Q ss_pred ecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC---CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018700 237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY 313 (351)
Q Consensus 237 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
|++ .+++..+. ...++.+.|+|+| ++|++++. .|.|.+||.+. .+.+.... |
T Consensus 89 d~~--~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~-------------------~~~i~~~~-~ 143 (194)
T PF08662_consen 89 DVK--GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRK-------------------KKKISTFE-H 143 (194)
T ss_pred cCc--ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCC-------------------CEEeeccc-c
Confidence 997 45566664 5678899999999 88888864 46799999997 77776664 3
Q ss_pred cceEEEEEeCCCCCceEEEee------eCCeEEEeecCc
Q 018700 314 EDSVYGLAWSSREPWIFASLS------YDGRVVVESVKP 346 (351)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~------~dg~v~vw~~~~ 346 (351)
. .++.++|+|+|+ +++++. .|+.++||++..
T Consensus 144 ~-~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 144 S-DATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred C-cEEEEEEcCCCC-EEEEEEeccceeccccEEEEEecC
Confidence 3 378999999999 566655 388999999864
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=2.3e-16 Score=124.60 Aligned_cols=221 Identities=15% Similarity=0.196 Sum_probs=151.9
Q ss_pred eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEE
Q 018700 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS 149 (351)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd 149 (351)
-++|||+|++++++ .+..+.|-|.. +.+..+.+ .--+.|.-+.|..+.-+++.+...++.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~-----~~yrlviRd~~---------tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASL-----SRYRLVIRDSE---------TLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeee-----eeeEEEEeccc---------hhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 46899999999886 45577777766 44443333 22456788999999887555558899999999
Q ss_pred cCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEe
Q 018700 150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTA 227 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~ 227 (351)
+...+-..++... ...+.+++|+|+|+.++.. .-+-.|.+|.+.+.+....-...+ +..++|+|+|+ +.+..
T Consensus 78 l~Qpew~ckIdeg-----~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~-f~ai~ 151 (447)
T KOG4497|consen 78 LVQPEWYCKIDEG-----QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQ-FCAIL 151 (447)
T ss_pred eecceeEEEeccC-----CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCc-eeeee
Confidence 9865544444332 2378999999999876655 568999999999876544433334 89999999999 45544
Q ss_pred cC-CC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018700 228 AD-ES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (351)
Q Consensus 228 ~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
+. |. .+.+..-.. -..++.+...+-..+.+.|+|+| ..|+ +||.-- .
T Consensus 152 sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~L-------------------e 201 (447)
T KOG4497|consen 152 SRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVL-------------------E 201 (447)
T ss_pred ecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCC-cEEE---------Eecchh-------------------h
Confidence 43 21 122211111 12455566666778899999999 6655 676543 2
Q ss_pred ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
-.+..+.- .-.+..++|+|.++ +++.|+.|+.+|+-+
T Consensus 202 ykv~aYe~-~lG~k~v~wsP~~q-flavGsyD~~lrvln 238 (447)
T KOG4497|consen 202 YKVYAYER-GLGLKFVEWSPCNQ-FLAVGSYDQMLRVLN 238 (447)
T ss_pred heeeeeee-ccceeEEEeccccc-eEEeeccchhhhhhc
Confidence 22222221 23588999999998 899999999999855
No 230
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.9e-15 Score=125.37 Aligned_cols=263 Identities=11% Similarity=0.110 Sum_probs=184.9
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee-eeccccceeEEEecCCCC-CcE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGR-HDK 136 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~-~~~ 136 (351)
..+..|.+.|..+.|+..|..|++ |+.|..|.+||.. ....... ..+|...|....|.|... .-+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~S----gSDD~~vv~WdW~---------~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLAS----GSDDLQVVVWDWV---------SGSPKLSFESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred hcccCCCCccceeeecccCceeec----cCccceEEeehhh---------ccCcccccccccccchhhhhccCCCCCcCc
Confidence 457889999999999999988888 5899999999988 3344333 357888898888888542 236
Q ss_pred EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecc--e---
Q 018700 137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA--H--- 210 (351)
Q Consensus 137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~--~--- 210 (351)
+.++.||.|++=.+........... ...|..+|.-++..|+..+ +++++.|+.+.-+|+++..+...+... +
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~r--l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKR--LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred eeccccCceeeeeeccccceeccee--cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 6668999999887764443332222 2356678999999988766 778889999999999987655444311 1
Q ss_pred ---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----ceeEeeC------CCCceeEEEecCCCCCeEEEeeCCCe
Q 018700 211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----PIQELPG------HTHWTWAVCCNPEYDGFILSAGTDST 276 (351)
Q Consensus 211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~dg~ 276 (351)
...++.+|...+.+++|+.|-.+++||.|...+ ++..+.. ....|++++|+.++ .-|+++-.|-.
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~ 359 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDED 359 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccc
Confidence 789999999998999999999999999886432 1333322 23468999999888 44444555777
Q ss_pred EEEEEcCCCCCCCCCCcccccCCcccccccce-eeccccc--eEEEEEe-CCCCCceEEEeeeCCeEEEeecC
Q 018700 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYED--SVYGLAW-SSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~-~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
|++|.-..+. ...+.... +. ...+. .+++|.. .|.++-| -|... ++++|+.=|.|.||+-.
T Consensus 360 IYLF~~~~~~-G~~p~~~s---~~---~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 360 IYLFNKSMGD-GSEPDPSS---PR---EQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKK 424 (559)
T ss_pred eEEecccccc-CCCCCCCc---ch---hhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecc
Confidence 8888443311 11111000 00 12222 3788854 4666665 57667 89999999999999854
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.67 E-value=4.4e-14 Score=110.20 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=187.8
Q ss_pred EeeeecCCCCcceEEEeeeeeCCC--------CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC---CCCceEEEEee
Q 018700 18 CISDVKADTDHTSFLTGTLSLKEE--------NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP---FDQRIFSTVFS 86 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~~ 86 (351)
+++..+-..-...+++||..+.+. +++.++.+.+....-.......-...++.+.|+. ++...++-
T Consensus 14 ~~~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~--- 90 (339)
T KOG0280|consen 14 PVPICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLD--- 90 (339)
T ss_pred CCCccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeee---
Confidence 344444333345888998877665 4566666655322111111122345677777753 33322222
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
....|.|.++....... ....+++...+.......++.|++.+.. ++++-.+|.+.+-+.... ........+.
T Consensus 91 a~a~G~i~~~r~~~~~s---s~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~---~le~vq~wk~ 163 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDES---SVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVYETEM---VLEKVQTWKV 163 (339)
T ss_pred ccccceEEEEeecccee---eeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEeccee---eeeecccccc
Confidence 25788999998763100 0011122221112224567889998885 666666788885444321 1111123345
Q ss_pred cccceeeeEECCCCC-cEEEeecCCeEEEEEcccC-CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018700 167 MLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSM-GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (351)
|.-+++-..|+...+ .+++|+.|+.+..||+|.. +.+..-...| |.++.-+|..+.++++|+.|-.|++||.|+.
T Consensus 164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 666888888876554 5678899999999999933 2332212233 8899888887779999999999999999988
Q ss_pred CcceeEeeCCCCceeEEEecCCCCCe-EEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018700 242 KAPIQELPGHTHWTWAVCCNPEYDGF-ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (351)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (351)
++|+..-. -.+.|+.+.++|.-... |+++-.. -.+|-+++....+ + .......+.|.+-+..-
T Consensus 244 ~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e-~-------------~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 244 GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLE-F-------------QIVLPSDKIHDSLCYGG 307 (339)
T ss_pred cCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccc-h-------------heeeeccccccceeecc
Confidence 88887654 35889999999976333 4444444 4778887762211 0 22455667788888888
Q ss_pred EeCCCCCceEEEee-eCCeEE-EeecCcc
Q 018700 321 AWSSREPWIFASLS-YDGRVV-VESVKPF 347 (351)
Q Consensus 321 ~~~~~~~~~l~s~~-~dg~v~-vw~~~~~ 347 (351)
.|..... ++|+|+ .|+.++ +|-.-+-
T Consensus 308 DWd~~~~-~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 308 DWDSKDS-FLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccccc-eeeeeeccccceeeeeeeccC
Confidence 9966545 788887 688855 8865443
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.4e-14 Score=122.55 Aligned_cols=240 Identities=12% Similarity=0.137 Sum_probs=168.1
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc--cceeEEEecCCCCCcEEE
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV--GKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~ 138 (351)
-+.|+..-+.|..+|||++++++ |-.-..|++||+. + +-..+..|. ..|.-.-.+.|-.. .+.
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAt---G~YKP~ikvydla---------n--LSLKFERhlDae~V~feiLsDD~SK-~v~ 111 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLAT---GTYKPQIKVYDLA---------N--LSLKFERHLDAEVVDFEILSDDYSK-SVF 111 (703)
T ss_pred hcCCccccceeEecCCCcEEEEe---cccCCceEEEEcc---------c--ceeeeeecccccceeEEEeccchhh-heE
Confidence 46788899999999999999998 5777899999998 2 223344442 23443344444443 333
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEc
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDY 216 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~ 216 (351)
-..|.+|-+..-. +....+.... .-.+++++.-..-|+.++....|+-++++.|.-+..+.... ++++..
T Consensus 112 L~~DR~IefHak~--G~hy~~RIP~------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 112 LQNDRTIEFHAKY--GRHYRTRIPK------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred eecCceeeehhhc--CeeeeeecCc------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence 3557777665433 1111111111 34556666555557777777889999999999888887543 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEecccCCcceeEee------CCCC-----ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELP------GHTH-----WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
++... +|++|+.+|.|.+||.|. ...+..+. .|.. .|+++.|+.+| ..++.|+.+|.+.|||++.
T Consensus 184 n~~hg-Lla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa- 259 (703)
T KOG2321|consen 184 NEEHG-LLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA- 259 (703)
T ss_pred cCccc-eEEecccCceEEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc-
Confidence 99998 999999999999999997 54454443 2332 38999999998 9999999999999999998
Q ss_pred CCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCc-eEEEeeeCCeEEEeecCc
Q 018700 286 NHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPW-IFASLSYDGRVVVESVKP 346 (351)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~ 346 (351)
.+++.. -.+..-+|..+.|.+.+.. .+++. ....++|||-..
T Consensus 260 ------------------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 260 ------------------SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT 303 (703)
T ss_pred ------------------CCceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence 444432 2344568999999876332 34443 456789998653
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.8e-14 Score=124.77 Aligned_cols=198 Identities=11% Similarity=0.181 Sum_probs=121.6
Q ss_pred eeeeeeccccceeEEEecCCCCCcEEEEec--CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eec
Q 018700 112 RIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATC 188 (351)
Q Consensus 112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~ 188 (351)
....+..+...+.+.+|+|+|+.+++++.. ...|++||+.++... .+ . ...+ .....+|+||++.|+. .+.
T Consensus 187 ~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l-~-~~~g---~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 187 NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VV-A-NFKG---SNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-Ee-e-cCCC---CccceEECCCCCEEEEEEcc
Confidence 334455677889999999999974444422 346999999865432 11 1 1112 4567899999998875 456
Q ss_pred CCeEEEEEc--ccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018700 189 ESSVQFWDL--RSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY 264 (351)
Q Consensus 189 d~~i~iwd~--~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (351)
++...+|.+ ..+. ...+.... .....|+|||+.+++++..++...+|.+.........+..+........|+|+|
T Consensus 261 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 261 DGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDG 339 (427)
T ss_pred CCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCC
Confidence 776666654 4433 33333222 567889999995555555556677776653232333333233344568899999
Q ss_pred CCeEEEeeCCC---eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe
Q 018700 265 DGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR 338 (351)
Q Consensus 265 ~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 338 (351)
.+|+..+.++ .|.+||+.. ++.. .+... .......|+|+|+.++++....|.
T Consensus 340 -~~Ia~~s~~~g~~~I~v~d~~~-------------------g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 340 -KLLAYISRVGGAFKLYVQDLAT-------------------GQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred -CEEEEEEccCCcEEEEEEECCC-------------------CCeE-EccCC-CCccCceECCCCCEEEEEEecCCC
Confidence 7777655443 699999976 3322 22221 224678999999954444444444
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.66 E-value=3.8e-14 Score=112.88 Aligned_cols=253 Identities=17% Similarity=0.280 Sum_probs=175.6
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc------------cceeEEEecCC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------GKINCVLWWSS 131 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~ 131 (351)
-.+-|.++.|...|.+|++ |..+|.|.++.-+.... ........++.|. ..|..+.|.++
T Consensus 24 eadiis~vef~~~Ge~Lat----GdkgGRVv~f~r~~~~~----~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLAT----GDKGGRVVLFEREKLYK----GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD 95 (433)
T ss_pred hhcceeeEEeecccceEee----cCCCCeEEEeecccccc----cceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence 3467889999999999988 47889999987653211 1122333444443 46889999987
Q ss_pred CCC-cEEEEecCCcEEEEEcCCCCCCc------------------c-cc------------cccccCcccceeeeEECCC
Q 018700 132 GRH-DKLVSIDEENIFLWSLDCSNKNA------------------Q-VQ------------SKQSSGMLHYLSGGAWDPH 179 (351)
Q Consensus 132 ~~~-~~~~~~~d~~v~iwd~~~~~~~~------------------~-~~------------~~~~~~~~~~v~~~~~~~~ 179 (351)
+.. .++.+..|.+|++|.+....... . +. ......|..-|++++++.|
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 653 35666889999999987432211 0 00 0012356677899999998
Q ss_pred CCcEEEeecCCeEEEEEcccCCcCcee---ecce-------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce---e
Q 018700 180 DVNAVAATCESSVQFWDLRSMGKTNSI---EHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI---Q 246 (351)
Q Consensus 180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~ 246 (351)
...++++ .|-.|.+|.++-......+ ++.. |++..|+|...++++-.++.|+|++.|+|...-+. +
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 8877664 5788999998854332222 2221 89999999988899999999999999999522110 1
Q ss_pred Eee------------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc
Q 018700 247 ELP------------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE 314 (351)
Q Consensus 247 ~~~------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
.+. .--..|..+.|++.| +|+++-+. -+|++||+.. ..+++.+++.|.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nm------------------e~~pv~t~~vh~ 314 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNM------------------EAKPVETYPVHE 314 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccc------------------cCCcceEEeehH
Confidence 111 112467889999999 99997665 4799999976 256666665553
Q ss_pred ------------ceE---EEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 315 ------------DSV---YGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 315 ------------~~v---~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
..| ..++|+.++. .+.+|+..+.++++++..
T Consensus 315 ~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 315 YLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred hHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCC
Confidence 122 4688999988 899999999999999643
No 235
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.9e-16 Score=139.19 Aligned_cols=228 Identities=18% Similarity=0.264 Sum_probs=157.4
Q ss_pred ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC
Q 018700 110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE 189 (351)
Q Consensus 110 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 189 (351)
.+.+..+.+|...|.|+.|...|.+ ++++++|..|+||..++...... ..||...++.++.+.+...+++++.|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-----~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-----CRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-----CCCCccccchhccchhhhhhhhcccC
Confidence 3556667899999999999999996 88889999999999886443332 23677899999999988889999999
Q ss_pred CeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE---ee-CCCCceeEEEecC
Q 018700 190 SSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE---LP-GHTHWTWAVCCNP 262 (351)
Q Consensus 190 ~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~-~~~~~v~~~~~~~ 262 (351)
..|++|.+..+.++..+. +| |++++|+|-. +.+.||++++||.+- ...+.. +. ....-+.++.|..
T Consensus 254 ~vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred ceEEEEecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccc
Confidence 999999999999988887 66 9999999965 578999999999882 100000 00 0112233333333
Q ss_pred CCCCeEEEeeCCCeEEEEEcCCCCCCCCCC------------------cccccCCcccccccceeeccccceEEEEEeCC
Q 018700 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPS------------------ESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
.+ .-++|++.|+.-..|.+...-...... .-....+....+.+++.+.+|...+.-+.++|
T Consensus 327 ~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 327 NG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 33 333444444433333222110000000 00001111122788888899999999999999
Q ss_pred CCCceEEEeeeCCeEEEeecCcccccC
Q 018700 325 REPWIFASLSYDGRVVVESVKPFLSRK 351 (351)
Q Consensus 325 ~~~~~l~s~~~dg~v~vw~~~~~~~~~ 351 (351)
-++.+..+++.||...|||+-.-.+.|
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcce
Confidence 888788899999999999997655543
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=2e-13 Score=125.12 Aligned_cols=294 Identities=14% Similarity=0.146 Sum_probs=182.1
Q ss_pred CCCCEEEEEEeCCCCCe---EEE-EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee
Q 018700 39 KEENEVHLLRLSSGGTE---LIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA 114 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~---~~~-~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 114 (351)
..++.+.+|+.....+. ... .....-...+.++..++.+..++++ +.||.|++.+++......- .....+
T Consensus 1068 S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~----t~DG~v~~~~id~~~~~~~--~~~~~r 1141 (1431)
T KOG1240|consen 1068 SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS----TKDGSVRVLRIDHYNVSKR--VATQVR 1141 (1431)
T ss_pred cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE----cCCCeEEEEEccccccccc--eeeeee
Confidence 46899999998865443 111 1222245789999999999999885 7999999999984211100 111111
Q ss_pred eeecc-ccc-eeEEEecCCCCC-cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018700 115 ALDAH-VGK-INCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS 191 (351)
Q Consensus 115 ~~~~h-~~~-v~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 191 (351)
....+ .+. |..-+|...... .++.+..-+.|..||+............... +.|++++.+|.++.++.|+..|.
T Consensus 1142 i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h---G~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1142 IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH---GLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred cccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc---cceeEEEecCCceEEEEecCCce
Confidence 22222 222 333445444333 4666677789999999865444444333322 38999999999999999999999
Q ss_pred EEEEEcccCCcCceeecce---eEEEEcCCC---CCcEEEEec-CCCeEEEEecccCCcceeEeeCC-C-------Cc--
Q 018700 192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTK---KKHLLVTAA-DESGIHLWDLRMLKAPIQELPGH-T-------HW-- 254 (351)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~---v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~-------~~-- 254 (351)
+.+||+|=+.++.....++ +..+..+|- ....+.+++ ..+.|.+|++.+ +..-..+... . .+
T Consensus 1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAPILSYALPSN 1297 (1431)
T ss_pred EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCcchhhhcccc
Confidence 9999999888877776555 555555543 333344444 578899999987 4333333211 0 01
Q ss_pred ---------eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCC-CCCc--------ccc--------------------
Q 018700 255 ---------TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE-LPSE--------SLV-------------------- 296 (351)
Q Consensus 255 ---------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~--------~~~-------------------- 296 (351)
.....+. ++..++++|+.|..|+.||......-. ...+ +..
T Consensus 1298 ~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~ 1376 (1431)
T KOG1240|consen 1298 DARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQ 1376 (1431)
T ss_pred cCCCCCcccceeeecc-cCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhh
Confidence 1111222 233789999999999999987653220 0000 000
Q ss_pred --cCCc-ccccccce-----eeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 297 --ESPN-QRANSLLN-----SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 297 --~~~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
...+ ....+.+. .-..|..+|+++++....+.++++++.||.|+||.
T Consensus 1377 tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1377 TVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0000 00000011 11247788999998877666999999999999995
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=1.8e-12 Score=110.96 Aligned_cols=255 Identities=11% Similarity=0.148 Sum_probs=161.4
Q ss_pred eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEE-EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018700 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (351)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (351)
.++..+++...+++........+.+..+++.++.+.+.. ............++++|+++.|+++. -.++.|.++++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van---y~~g~v~v~~l 116 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN---YGGGSVSVFPL 116 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE---TTTTEEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE---ccCCeEEEEEc
Confidence 345567777777776433236789999999998544443 33333455667899999999999984 56889999999
Q ss_pred ccccCCCCCCcceeeeeeec-----------cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 99 PELYGQLNSPQLERIAALDA-----------HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
... ........... ......++.++|++++++++.-....|.+|+++................
T Consensus 117 ~~~------g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 117 DDD------GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp CTT------SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred cCC------cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 831 11111111111 1244678999999997555443456899999986442111111111112
Q ss_pred ccceeeeEECCCCCcEEEee-cCCeEEEEEcc--cCC--cCceeec------c--eeEEEEcCCCCCcEEEEecCCCeEE
Q 018700 168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR--SMG--KTNSIEH------A--HVRNVDYDTKKKHLLVTAADESGIH 234 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~--~~~--~~~~~~~------~--~v~~~~~~~~~~~~l~~~~~dg~i~ 234 (351)
......+.|+|+++++++.. .++.|.++++. .+. ....+.. + ....++++|+|++++++......|.
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 23678899999999988776 57899999988 332 1111111 1 1778999999997777777888999
Q ss_pred EEecccCCc---ceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018700 235 LWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST 284 (351)
Q Consensus 235 i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 284 (351)
+|++..... .+..+.........++++|+| ++|+++. .++.|.+|++..
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeC
Confidence 999953222 233333334557899999999 6666555 577999998853
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=7.4e-15 Score=123.27 Aligned_cols=200 Identities=13% Similarity=0.177 Sum_probs=140.7
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc-cccCcccceeeeEE-----CCCCCcEEEeecCCeEEEE
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAW-----DPHDVNAVAATCESSVQFW 195 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iw 195 (351)
.+.....+-.|.++.+.-+ ..+++|+.+........+.. ...+. ...+-.| .|.+--++.+-.-|.+.+.
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLI 200 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEe
Confidence 3444555556665333334 56888888743332222211 11111 1222233 4456668888888999999
Q ss_pred EcccCCcCceeecc-----e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC---------------------------
Q 018700 196 DLRSMGKTNSIEHA-----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--------------------------- 242 (351)
Q Consensus 196 d~~~~~~~~~~~~~-----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------------- 242 (351)
|....+....+... . ++++.|-|.++.+++++-.+|.+++||.....
T Consensus 201 dp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 201 DPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred cchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 98764332222211 1 99999999888888889999999999764211
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW 322 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 322 (351)
.|+..+..-...|+..+|+||| .+||+.+.||.+||||..+ .+++...+..-+...+++|
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt-------------------~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT-------------------QELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred CccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccH-------------------HHHHHHHHhhccceEEEEE
Confidence 1333333344578899999999 9999999999999999998 7888777777778999999
Q ss_pred CCCCCceEEEeeeCCeEEEeecCc
Q 018700 323 SSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 323 ~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
||||+ +|++|++|-.|.||.+.+
T Consensus 341 SPDGK-yIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 341 SPDGK-YIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred cCCcc-EEEecCCcceEEEEEecc
Confidence 99999 899999999999999864
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=3.8e-13 Score=107.26 Aligned_cols=312 Identities=17% Similarity=0.286 Sum_probs=193.3
Q ss_pred eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC-e-EEEEeeecC------------CcceeeeeeCCCCCc--
Q 018700 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT-E-LICEGLFSH------------PNEIWDLSSCPFDQR-- 79 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~h------------~~~v~~i~~~~~~~~-- 79 (351)
+.-+..+.++..+.+++.|. .+|++.++.-....+ . .....+..| ...|+.|.|.+++..
T Consensus 25 adiis~vef~~~Ge~LatGd----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGD----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccceEeecC----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 45567788888899999884 456666665444332 1 111222223 367889999987652
Q ss_pred eEEEEeecCCcceEEEEEcccccCCCC-----------------CC---------cceeeeee-eccccceeEEEecCCC
Q 018700 80 IFSTVFSTGESYGAAIWQIPELYGQLN-----------------SP---------QLERIAAL-DAHVGKINCVLWWSSG 132 (351)
Q Consensus 80 l~~~~~~~~~d~~i~vw~~~~~~~~~~-----------------~~---------~~~~~~~~-~~h~~~v~~~~~~~~~ 132 (351)
++. ...|.+|++|.+.+...... -+ .-.+.+.+ ..|+--|.++.++.|+
T Consensus 101 FLl----stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 101 FLL----STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred EEE----ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 222 26999999999875321110 00 00111111 2577789999999999
Q ss_pred CCcEEEEecCCcEEEEEcCCCCCCccccc---ccccCcccceeeeEECCCCCcE-EEeecCCeEEEEEcccCCcC----c
Q 018700 133 RHDKLVSIDEENIFLWSLDCSNKNAQVQS---KQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKT----N 204 (351)
Q Consensus 133 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~----~ 204 (351)
. .+.+++|-.|-+|+++-..+...+.. ......+.-|++..|+|....+ +-.+..|+|++.|++....- .
T Consensus 177 E--t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 177 E--TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred c--eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 8 56677889999999986554433322 2222334568889999976554 45678999999999953211 1
Q ss_pred eeec---c-------e----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC------------c---e
Q 018700 205 SIEH---A-------H----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH------------W---T 255 (351)
Q Consensus 205 ~~~~---~-------~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~---v 255 (351)
.+.. + . |..+.|+++|+ ++++-. --+|++||+....+|+.+++.|.. . -
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 1110 0 0 88999999999 455332 368999999777888888887753 1 2
Q ss_pred eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC-Ccccccccceeec--------------cccceEEEE
Q 018700 256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES-PNQRANSLLNSYS--------------DYEDSVYGL 320 (351)
Q Consensus 256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~v~~~ 320 (351)
..++|+.++ .+++||+.....++|+...+..+.......... +.....++..... .....+...
T Consensus 333 Fec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~ 411 (433)
T KOG1354|consen 333 FECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHT 411 (433)
T ss_pred eEEEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhh
Confidence 457888888 899999999999999976654443322111111 1111111111111 112346677
Q ss_pred EeCCCCCceEEEeeeCCeEEEe
Q 018700 321 AWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 321 ~~~~~~~~~l~s~~~dg~v~vw 342 (351)
+|+|... .+|.+.. +.+++|
T Consensus 412 aWhp~en-~ia~aat-nnlyif 431 (433)
T KOG1354|consen 412 AWHPKEN-SIAVAAT-NNLYIF 431 (433)
T ss_pred ccCCccc-eeeeeec-CceEEe
Confidence 8999988 6766664 445554
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.5e-13 Score=117.40 Aligned_cols=225 Identities=12% Similarity=0.135 Sum_probs=134.8
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+..+...+.+..|+|+++.|+.+... .....|.+||+.. ...+.+..+ .+......|+|+|+.++++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~-~g~~~L~~~dl~t-------g~~~~lt~~---~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFE-NRKAEIFVQDIYT-------QVREKVTSF---PGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEec-CCCcEEEEEECCC-------CCeEEecCC---CCCcCCeeECCCCCEEEEEE
Confidence 344567788999999999998876422 1223577888762 111222222 23345689999999755555
Q ss_pred ecCCc--EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C--CeEEEEEcccCCcCceeecce-eEE
Q 018700 140 IDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSMGKTNSIEHAH-VRN 213 (351)
Q Consensus 140 ~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~-v~~ 213 (351)
..++. |+++|+.++.. ..+.. +.......+|+||++.|+..+. + ..|+++|+.+++.......+. ...
T Consensus 281 ~~~g~~~Iy~~dl~tg~~-~~lt~-----~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~ 354 (448)
T PRK04792 281 SKDGQPEIYVVDIATKAL-TRITR-----HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG 354 (448)
T ss_pred eCCCCeEEEEEECCCCCe-EECcc-----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC
Confidence 66664 77778775432 22211 1224567899999998877653 3 357777877665432222233 456
Q ss_pred EEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe--EEEEEcCCCCCCC
Q 018700 214 VDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST--VNLWLVSTSNHDE 289 (351)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~ 289 (351)
.+|+|+|+.++++...++ .|.++|+.. +. ...+... .......|+|+|..++++...++. +.+++..
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~------ 425 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID------ 425 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC------
Confidence 789999996555555555 455567664 32 3333322 223355899999444455555554 5566653
Q ss_pred CCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
+.....+..+...+...+|+|
T Consensus 426 --------------G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 --------------GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --------------CCceEECcCCCCCcCCCccCC
Confidence 444555555555677888887
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=1.1e-12 Score=116.06 Aligned_cols=215 Identities=12% Similarity=0.110 Sum_probs=132.2
Q ss_pred CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc
Q 018700 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG 121 (351)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 121 (351)
..|.+++..... ...+..+...+...+|+|+++.|+.+...+ ....|.+|++. ..+. ..+..+..
T Consensus 170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~---------~g~~-~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA---------TGQR-EKVASFPG 234 (417)
T ss_pred ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECC---------CCCE-EEeecCCC
Confidence 345555543222 133455677889999999999998774322 23579999987 2222 22334556
Q ss_pred ceeEEEecCCCCCcEEEEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---CeEEEEE
Q 018700 122 KINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWD 196 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd 196 (351)
.+.+++|+|+++.++++.+.+ ..|++|++.++.. ..+.. +........|+|+++.|+..+.. ..|+++|
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~-----~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTN-----GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCC-----CCCCCCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 677789999998755554444 4688889876432 22211 11234566899999988876542 3688888
Q ss_pred cccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC---eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018700 197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (351)
Q Consensus 197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 272 (351)
+.+++......... ...+.|+|+++ .++.+..++ .|.+||+.. + ....+... .......|+|++ ..|+..+
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~-~~~~~p~~spdg-~~l~~~~ 383 (417)
T TIGR02800 309 ADGGEVRRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDG-G-GERVLTDT-GLDESPSFAPNG-RMILYAT 383 (417)
T ss_pred CCCCCEEEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCC-C-CeEEccCC-CCCCCceECCCC-CEEEEEE
Confidence 87665432222223 77889999998 455555544 788888875 3 23333322 234567899999 6666555
Q ss_pred CCC---eEEEEEc
Q 018700 273 TDS---TVNLWLV 282 (351)
Q Consensus 273 ~dg---~i~iwd~ 282 (351)
.++ .+.+.+.
T Consensus 384 ~~~~~~~l~~~~~ 396 (417)
T TIGR02800 384 TRGGRGVLGLVST 396 (417)
T ss_pred eCCCcEEEEEEEC
Confidence 543 3444443
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.5e-13 Score=111.16 Aligned_cols=205 Identities=15% Similarity=0.130 Sum_probs=146.7
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC--C
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--E 143 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--~ 143 (351)
+.|..++.. +..|+++ -.+|.+.+|....... ...++..+..+ ..+..+.-++..++++++++.. .
T Consensus 106 ~~I~gl~~~--dg~Litc----~~sG~l~~~~~k~~d~-----hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITC----VSSGNLQVRHDKSGDL-----HSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred ccccchhhc--CCEEEEE----ecCCcEEEEeccCCcc-----ccccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence 344444332 3345554 4788999999873111 02333344333 4566777788888755556777 7
Q ss_pred cEEEEEcCCCCCCccccccc--ccCc--ccceeeeEECCC--CCcEEEeecCCeEEEEEcccCC-cCceeecce--eEEE
Q 018700 144 NIFLWSLDCSNKNAQVQSKQ--SSGM--LHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMG-KTNSIEHAH--VRNV 214 (351)
Q Consensus 144 ~v~iwd~~~~~~~~~~~~~~--~~~~--~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~--v~~~ 214 (351)
.+.+||+....+........ .-+. .-.++++.|.+. ...+++++.-+.+++||.+.++ ++..+.... +.++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 89999999754333221111 0011 114677889887 6779999999999999999764 555555433 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
...|++. ++++|..-+.+..||+|........+.+-.+.|.++..+|.+ .++++++-|..+||+|+.+
T Consensus 254 ~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 254 GLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 9999998 799999999999999998443444488889999999999999 9999999999999999998
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.1e-12 Score=114.53 Aligned_cols=226 Identities=12% Similarity=0.117 Sum_probs=136.0
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
..+..+...+...+|+|+++.|+.+... .....|.+|++. .++. ..+....+.+....|+|+|+.++++
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~---------~g~~-~~l~~~~g~~~~~~~SpDG~~la~~ 260 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFE-QKRPRIFVQNLD---------TGRR-EQITNFEGLNGAPAWSPDGSKLAFV 260 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcC-CCCCEEEEEECC---------CCCE-EEccCCCCCcCCeEECCCCCEEEEE
Confidence 3345677889999999999999876422 123468888887 2222 2222333445578999999975555
Q ss_pred EecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C--CeEEEEEcccCCcCceeecce-eE
Q 018700 139 SIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSMGKTNSIEHAH-VR 212 (351)
Q Consensus 139 ~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~-v~ 212 (351)
...++ .|++||+.++.. ..+.. +........|+|+++.++..+. + ..|+++|+.+++......... ..
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~-~~lt~-----~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~ 334 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQL-SRVTN-----HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA 334 (430)
T ss_pred EccCCCceEEEEECCCCCe-EEccc-----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence 54444 688889886432 22211 1224556789999998877653 2 367778887765432222222 55
Q ss_pred EEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe--EEEEEcCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST--VNLWLVSTSNHD 288 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~ 288 (351)
...|+|+++.++++...++ .|.++|+.. +. ...+.. ........|+|+|..++++...++. |.+++..
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~----- 406 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN----- 406 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-----
Confidence 6789999995555544444 588888875 32 333332 2233456899999444444444444 5555554
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (351)
+.....+..+...+...+|+|
T Consensus 407 ---------------g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 ---------------GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ---------------CCceEECcCCCCCcCCCccCC
Confidence 233333444445567778887
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=4.1e-12 Score=108.77 Aligned_cols=242 Identities=13% Similarity=0.074 Sum_probs=150.0
Q ss_pred CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
..++.|.+.|.. +.+.+..+......-..+.++||+++ +++++.|+.|.++|+.+.+....+....
T Consensus 13 ~~~~~v~viD~~---------t~~~~~~i~~~~~~h~~~~~s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 13 RGSGSVAVIDGA---------TNKVVARIPTGGAPHAGLKFSPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GGGTEEEEEETT---------T-SEEEEEE-STTEEEEEE-TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cCCCEEEEEECC---------CCeEEEEEcCCCCceeEEEecCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 578899999987 67788888765555556789999997 4455679999999999866554444333
Q ss_pred ccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce---------eEEEEcCCCCCcEEEEecCCCeEEEEe
Q 018700 168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAADESGIHLWD 237 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d 237 (351)
...++++++||++++++. .++.+.++|.++.+.+..+.... +..+..+|..+.++++--+.+.|.+.|
T Consensus 79 --~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 79 --NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp --EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred --CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 678899999999999876 68999999999988887776331 667777888875555555668999999
Q ss_pred cccCCcceeEeeCCCCceeEEEecCCCCCeEEE-eeCCCeEEEEEcCCCCCCC------CCC---------------ccc
Q 018700 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNHDE------LPS---------------ESL 295 (351)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~------~~~---------------~~~ 295 (351)
......................|+|++ ++++. ...+..|-++|.......- .+. +..
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred eccccccceeeecccccccccccCccc-ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence 876443333333345567789999999 66554 4556688888877642100 000 000
Q ss_pred c--------------cC-CcccccccceeeccccceEEEEEeCCCCCceEEE---eeeCCeEEEeecCcc
Q 018700 296 V--------------ES-PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVVVESVKPF 347 (351)
Q Consensus 296 ~--------------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~dg~v~vw~~~~~ 347 (351)
. .. .+...++.+..+.....+ .-+.-||+++++.+. +...+.|.++|.++.
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 0 00 112334555555554444 667889999955554 356689999999875
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=9.1e-13 Score=105.13 Aligned_cols=287 Identities=14% Similarity=0.206 Sum_probs=187.2
Q ss_pred eeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018700 37 SLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116 (351)
Q Consensus 37 ~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 116 (351)
++.++..+++|.--+... .-......-+.+++++.+.++...|++. -..|++.-+.+.+..+ .....+..
T Consensus 41 ~~s~drtvrv~lkrds~q-~wpsI~~~mP~~~~~~~y~~e~~~L~vg----~~ngtvtefs~sedfn-----km~~~r~~ 110 (404)
T KOG1409|consen 41 SVSEDRTVRVWLKRDSGQ-YWPSIYHYMPSPCSAMEYVSESRRLYVG----QDNGTVTEFALSEDFN-----KMTFLKDY 110 (404)
T ss_pred EccccceeeeEEeccccc-cCchhhhhCCCCceEeeeeccceEEEEE----EecceEEEEEhhhhhh-----hcchhhhh
Confidence 344556666654333221 1111122345789999999988888885 4778888888775333 34555667
Q ss_pred eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018700 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (351)
Q Consensus 117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 196 (351)
..|...|..+-|+..... +++++.|..+.---.+.+.......... ...++.+.-. +.+.|...|.|.+-.
T Consensus 111 ~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------~~t~~~~d~~--~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 111 LAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFET------PASALQFDAL--YAFVGDHSGQITMLK 181 (404)
T ss_pred hhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeec------cCCCCceeeE--EEEecccccceEEEE
Confidence 789999999999988774 6666778777655555444443333221 2222222211 455555667776666
Q ss_pred cccC--CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018700 197 LRSM--GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (351)
Q Consensus 197 ~~~~--~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 271 (351)
+... ..+.++. +| +.+++|.|... ++.+|..|..+.+||+.-......++.+|...|..+...+-- +.+.++
T Consensus 182 ~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~ 258 (404)
T KOG1409|consen 182 LEQNGCQLITTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISC 258 (404)
T ss_pred EeecCCceEEEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeec
Confidence 5533 2333444 55 99999999887 899999999999999975445567788999999999888877 899999
Q ss_pred eCCCeEEEEEcCCCCCCCCCCcccccCCcc--------------------------------------------------
Q 018700 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQ-------------------------------------------------- 301 (351)
Q Consensus 272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 301 (351)
+.||.|.+|++..... +.+....+.+.++
T Consensus 259 ~edg~i~~w~mn~~r~-etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~ 337 (404)
T KOG1409|consen 259 GEDGGIVVWNMNVKRV-ETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEF 337 (404)
T ss_pred cCCCeEEEEeccceee-cCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccccee
Confidence 9999999999976411 1111111111000
Q ss_pred --------------cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 302 --------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 302 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
....++..+..-...|+.+.+..+-. +|+++|.|+.|+|||+.+.
T Consensus 338 ~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlg-lLvTsG~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 338 SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLG-LLVTSGTDRVIKIWDVRSV 396 (404)
T ss_pred EEEEecccchhhhcCCCCccccccccccceeEEEhhhhcc-ceeecCCceEEEEEechhh
Confidence 11122333322223588898888766 8999999999999999764
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=6.4e-13 Score=103.79 Aligned_cols=230 Identities=13% Similarity=0.149 Sum_probs=148.0
Q ss_pred CcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecC---CCCCcEEEEecCCcEEEEEcCCCCCCcccccccc
Q 018700 89 ESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS 164 (351)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~---~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 164 (351)
.-|.+.+|++.+. ...+..++ ....+.+..+.|.- ++...++-.-.+|.|.++..........+.....
T Consensus 44 R~Gkl~Lys~~d~-------~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~ 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDM-------KLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS 116 (339)
T ss_pred eccceEEEeeccc-------ccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence 3457888888732 11111111 22345567777753 3342233345579999998774333222221111
Q ss_pred cCccc-ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018700 165 SGMLH-YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (351)
Q Consensus 165 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (351)
..... ...++.|++.+..++++-.+|.+.+-+........ ..+ .| ....+|+...++++++|++|+.+..||+
T Consensus 117 ~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 117 KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 11111 25577899989999999889998865544433222 333 44 7788898888889999999999999999
Q ss_pred ccCCcceeE-eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceE
Q 018700 239 RMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV 317 (351)
Q Consensus 239 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 317 (351)
|.++..+.. .+.|...|.+|.-+|..+.+++||+.|-.|++||.++ .++++..-+. .+.|
T Consensus 196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn------------------m~kPl~~~~v-~GGV 256 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN------------------MGKPLFKAKV-GGGV 256 (339)
T ss_pred cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc------------------ccCccccCcc-ccce
Confidence 966654444 5578999999999987779999999999999999996 2555544433 3679
Q ss_pred EEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 318 YGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 318 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
+.+.++|.-...+..+..-+-.+|-+++
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEec
Confidence 9999998543233333333334454444
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.9e-12 Score=108.51 Aligned_cols=271 Identities=11% Similarity=0.188 Sum_probs=167.6
Q ss_pred ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEE----ee--cCCcceEEE
Q 018700 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTV----FS--TGESYGAAI 95 (351)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~----~~--~~~d~~i~v 95 (351)
...++++..|++++ +..+.+++..... ..... ....+.++.|+|.+.+|.+-- .. ....-.+++
T Consensus 40 ~~~S~~G~lfA~~~-----~~~v~i~~~~~~~--~~lt~---~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 40 FAYSNNGRLFAYSD-----NQVVKVFEIATLK--VVLCV---ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred EEEcCCCcEEEEEc-----CCeEEEEEccCCc--EEEEe---ccceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 34455666666653 4566666665543 22111 122889999999988775420 00 011234779
Q ss_pred EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceee--
Q 018700 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG-- 173 (351)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~-- 173 (351)
|+++ +......+..-...-++..|++|.. +++=-..+.+.+|++.........+. ...+..
T Consensus 110 ~~ve---------t~~~~s~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~kl~------~~~i~~f~ 172 (566)
T KOG2315|consen 110 YNVE---------TGVQRSQIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHKLS------VSGITMLS 172 (566)
T ss_pred eeec---------cceehhheehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceeeeee------ccceeeEE
Confidence 9988 4344444433333336888888877 33333457788888875322211111 112222
Q ss_pred --------------------------------------------------eEECCCCCcEEE-eec-----------CCe
Q 018700 174 --------------------------------------------------GAWDPHDVNAVA-ATC-----------ESS 191 (351)
Q Consensus 174 --------------------------------------------------~~~~~~~~~l~~-~~~-----------d~~ 191 (351)
+.|++-+.-|++ ++. +.+
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 345554443322 211 235
Q ss_pred EEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE-ecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018700 192 VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (351)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 269 (351)
+++++++...+...+.... |.++.|+|+++.+.++ |-.-..+.|||++ +.++..+. +++-+++-|+|.| ++++
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g-~ii~ 327 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHG-NIIL 327 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCC-CEEE
Confidence 6666666333333333222 9999999999854433 5566799999998 56776664 6788899999999 8888
Q ss_pred EeeC---CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee------eCCeEE
Q 018700 270 SAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS------YDGRVV 340 (351)
Q Consensus 270 s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~v~ 340 (351)
.+|- -|.|.+||+.+ .+++..+..... +-+.|+|||+ +|+++. .|+.++
T Consensus 328 lAGFGNL~G~mEvwDv~n-------------------~K~i~~~~a~~t--t~~eW~PdGe-~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPN-------------------RKLIAKFKAANT--TVFEWSPDGE-YFLTATTAPRLRVDNGIK 385 (566)
T ss_pred EeecCCCCCceEEEeccc-------------------hhhccccccCCc--eEEEEcCCCc-EEEEEeccccEEecCCeE
Confidence 7775 56899999998 788888876544 4588999999 565554 378899
Q ss_pred EeecCc
Q 018700 341 VESVKP 346 (351)
Q Consensus 341 vw~~~~ 346 (351)
||++..
T Consensus 386 iwhytG 391 (566)
T KOG2315|consen 386 IWHYTG 391 (566)
T ss_pred EEEecC
Confidence 999853
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.1e-12 Score=113.15 Aligned_cols=202 Identities=13% Similarity=0.170 Sum_probs=119.4
Q ss_pred eeeeccccceeEEEecCCCCCcEEEEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCC
Q 018700 114 AALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCES 190 (351)
Q Consensus 114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~ 190 (351)
+.+..+...+.+..|+|||+.+++++..+ ..|++||+.++... .+ . ...+ .....+|+||++.|+.. ..++
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l-t-~~~g---~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV-T-SFPG---INGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee-c-CCCC---CcCCeeECCCCCEEEEEEeCCC
Confidence 34556677889999999999755555433 35888898765321 11 1 1112 34467999999988764 4455
Q ss_pred --eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCe--EEEEecccCCcceeEeeCCCCceeEEEecCCCC
Q 018700 191 --SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD 265 (351)
Q Consensus 191 --~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (351)
.|+++|+.+++......... ....+|+|+++.++++...++. |+++|+.. ++ ...+..........+|+|+|
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~Lt~~g~~~~~~~~SpDG- 361 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRLTFEGEQNLGGSITPDG- 361 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEEecCCCCCcCeeECCCC-
Confidence 48888888765432222122 6778999999966565555554 55566654 32 33333223334567899999
Q ss_pred CeEEEee-CCCe--EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe--EE
Q 018700 266 GFILSAG-TDST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR--VV 340 (351)
Q Consensus 266 ~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--v~ 340 (351)
.+|+..+ .++. |.++|+.. ++. ..+.... ......|+|+|+.++.+...++. ++
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~-------------------g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLET-------------------GAM-QVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CEEEEEEecCCceEEEEEECCC-------------------CCe-EEccCCC-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 5555444 3454 44456654 222 1222111 12245799999965555555554 55
Q ss_pred EeecC
Q 018700 341 VESVK 345 (351)
Q Consensus 341 vw~~~ 345 (351)
+++.+
T Consensus 421 ~~~~~ 425 (448)
T PRK04792 421 AVSID 425 (448)
T ss_pred EEECC
Confidence 66654
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.2e-10 Score=94.22 Aligned_cols=253 Identities=13% Similarity=0.164 Sum_probs=165.5
Q ss_pred eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018700 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (351)
.+.+.++++...++++. ..+.++.+..+++++..+.+.......-. ..-..++++++++.++++- -.-+.|.++.
T Consensus 42 ptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An---Y~~g~v~v~p 117 (346)
T COG2706 42 PTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN---YHSGSVSVYP 117 (346)
T ss_pred CceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE---ccCceEEEEE
Confidence 34566777776666653 34457889999999875655443322222 3338899999999999985 4457899999
Q ss_pred cccccCCCCCCcceeeeeeeccccc----------eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 98 IPELYGQLNSPQLERIAALDAHVGK----------INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
+.+. +..........|.+. +.+..+.|+++++++..-.--.|.+|++..+.......... ..
T Consensus 118 ~~~d------G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~ 189 (346)
T COG2706 118 LQAD------GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KP 189 (346)
T ss_pred cccC------CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CC
Confidence 8742 122333233345444 88899999999644443223479999999554332221111 11
Q ss_pred ccceeeeEECCCCCcEEEee-cCCeEEEEEcccC-CcCcee------ec---ce--eEEEEcCCCCCcEEEEecCCCeEE
Q 018700 168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM-GKTNSI------EH---AH--VRNVDYDTKKKHLLVTAADESGIH 234 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~------~~---~~--v~~~~~~~~~~~~l~~~~~dg~i~ 234 (351)
......+.|+|++++..+.+ -+++|-+|..... ..+..+ +. +. ...+..+|+|+++.++--....|.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 23678899999999988776 5899999998863 111111 11 11 788999999995555444456899
Q ss_pred EEecccCCcceeEee---CCCCceeEEEecCCCCCeEEEeeCC-CeEEEEEcCC
Q 018700 235 LWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTD-STVNLWLVST 284 (351)
Q Consensus 235 i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~ 284 (351)
+|.+......+..+. .+........|+|.+ .+|+++.++ ..|.+|.+..
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 998876544333322 344456788999999 777777664 4799998875
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=3.5e-12 Score=112.85 Aligned_cols=214 Identities=11% Similarity=0.120 Sum_probs=131.2
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--CCcEEEEEcCCCCCCcccccccccCcc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGML 168 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~ 168 (351)
..|.++|.. ......+..+...+...+|+|+|+.+++++.. ...|++||+.++.... +. . +.
T Consensus 170 ~~l~~~d~~----------g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~--~---~~ 233 (417)
T TIGR02800 170 YELQVADYD----------GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA--S---FP 233 (417)
T ss_pred ceEEEEcCC----------CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee--c---CC
Confidence 356666654 12234455667778999999999974444432 2579999998653221 11 1 12
Q ss_pred cceeeeEECCCCCcEEEe-ecC--CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCC
Q 018700 169 HYLSGGAWDPHDVNAVAA-TCE--SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLK 242 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~-~~d--~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 242 (351)
..+.+++|+|+++.|+.. +.+ ..|++||+.+++......... .....|+|+++.++++...++ .|+++|+.. +
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~ 312 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-G 312 (417)
T ss_pred CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-C
Confidence 245678999999987754 333 468889988765332222122 456789999985555544444 577777764 3
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCCC---eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (351)
....+..+...+..+.|+|+| .+++..+.++ .|.+||+.. +.. ..+... .....
T Consensus 313 -~~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~-------------------~~~-~~l~~~-~~~~~ 369 (417)
T TIGR02800 313 -EVRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDG-------------------GGE-RVLTDT-GLDES 369 (417)
T ss_pred -CEEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCC-------------------CCe-EEccCC-CCCCC
Confidence 344555556667888999999 7777776665 788888875 221 122211 12345
Q ss_pred EEeCCCCCceEEEeeeCC---eEEEeecC
Q 018700 320 LAWSSREPWIFASLSYDG---RVVVESVK 345 (351)
Q Consensus 320 ~~~~~~~~~~l~s~~~dg---~v~vw~~~ 345 (351)
..|+|+++. |+..+.++ .+++.+..
T Consensus 370 p~~spdg~~-l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 370 PSFAPNGRM-ILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ceECCCCCE-EEEEEeCCCcEEEEEEECC
Confidence 689999984 54444433 35555443
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.6e-12 Score=111.18 Aligned_cols=206 Identities=12% Similarity=0.105 Sum_probs=124.0
Q ss_pred eeeeccccceeEEEecCCCCCcEE--EEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-
Q 018700 114 AALDAHVGKINCVLWWSSGRHDKL--VSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC- 188 (351)
Q Consensus 114 ~~~~~h~~~v~~~~~~~~~~~~~~--~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 188 (351)
..+......+..-+|+|||+.+.+ ++..+ ..|.+.++..+... .+.. ..+ .....+|+|||+.|+..+.
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~--~~g---~~~~p~wSPDG~~Laf~s~~ 251 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA--LQG---NQLMPTFSPRKKLLAFISDR 251 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec--CCC---CccceEECCCCCEEEEEECC
Confidence 344445566778899999986333 44333 46788888765322 2211 112 3456799999999887653
Q ss_pred ----CCeEEEEEcccCC--cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEe--cccCCcceeEeeCCCCceeE
Q 018700 189 ----ESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWD--LRMLKAPIQELPGHTHWTWA 257 (351)
Q Consensus 189 ----d~~i~iwd~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~v~~ 257 (351)
+..+..|++..+. ....+.... ....+|+|||+.++++...+|...+|. +...+.....+..+...+..
T Consensus 252 ~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~ 331 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSC 331 (428)
T ss_pred CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccc
Confidence 2234457776531 222222121 467899999995555555667555554 43212234445555566788
Q ss_pred EEecCCCCCeEEEeeC-C--CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018700 258 VCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 258 ~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 334 (351)
..|+|+| ..|+..+. + ..|.+||+.. ++.. .+......+....|+|||+.++++..
T Consensus 332 p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~-------------------g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 332 PAWSPDG-KKIAFCSVIKGVRQICVYDLAT-------------------GRDY-QLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred eeECCCC-CEEEEEEcCCCCcEEEEEECCC-------------------CCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence 9999999 66654433 3 3688999986 3332 22222234677899999995555554
Q ss_pred e--CCeEEEeecCc
Q 018700 335 Y--DGRVVVESVKP 346 (351)
Q Consensus 335 ~--dg~v~vw~~~~ 346 (351)
. ...|.++++..
T Consensus 391 ~~g~~~L~~vdl~~ 404 (428)
T PRK01029 391 NSNESELYLISLIT 404 (428)
T ss_pred CCCCceEEEEECCC
Confidence 3 35678888764
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=9e-12 Score=110.46 Aligned_cols=203 Identities=14% Similarity=0.152 Sum_probs=122.0
Q ss_pred eeeeeccccceeEEEecCCCCCcEEEEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecC
Q 018700 113 IAALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCE 189 (351)
Q Consensus 113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 189 (351)
...+..+...+....|+|+|+.+++++..+ ..|.+|++.++... .+. ...+ ......|+|+++.|+.. ..+
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~--~~~g---~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QIT--NFEG---LNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-Ecc--CCCC---CcCCeEECCCCCEEEEEEccC
Confidence 344556777899999999999754554332 46899999865332 111 1112 34568999999988754 334
Q ss_pred C--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018700 190 S--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY 264 (351)
Q Consensus 190 ~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (351)
+ .|++||+.+++......... .....|+|+++.++++...++ .|+++|+.. ++ ...+...........|+|+|
T Consensus 265 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 265 GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERVTFVGNYNARPRLSADG 342 (430)
T ss_pred CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccceEECCCC
Confidence 4 68888998775432222122 667889999986556555544 566667654 33 33333222334567899999
Q ss_pred CCeEEEeeC-CC--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC--eE
Q 018700 265 DGFILSAGT-DS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--RV 339 (351)
Q Consensus 265 ~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~v 339 (351)
.+|+..+. ++ .|.++|+.. ++. ..+.. ........|+|+|+.++++...++ .|
T Consensus 343 -~~i~~~~~~~~~~~l~~~dl~t-------------------g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 343 -KTLVMVHRQDGNFHVAAQDLQR-------------------GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred -CEEEEEEccCCceEEEEEECCC-------------------CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence 66655443 33 577888876 322 12211 111235689999995555554444 35
Q ss_pred EEeecC
Q 018700 340 VVESVK 345 (351)
Q Consensus 340 ~vw~~~ 345 (351)
.++++.
T Consensus 401 ~~~~~~ 406 (430)
T PRK00178 401 MLVSIN 406 (430)
T ss_pred EEEECC
Confidence 555554
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.3e-11 Score=105.04 Aligned_cols=273 Identities=11% Similarity=0.115 Sum_probs=179.0
Q ss_pred eeecCCCCcceEEE-eeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC--cceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018700 20 SDVKADTDHTSFLT-GTLSLKEENEVHLLRLSSGGTELICEGLFSHP--NEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (351)
Q Consensus 20 ~~~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~--~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw 96 (351)
+.+..++++.-++. |+. .-.|.++++....-+ +..|. ..|.-.-.+.|-..++.. -.|.+|.+.
T Consensus 55 t~ik~s~DGqY~lAtG~Y----KP~ikvydlanLSLK-----FERhlDae~V~feiLsDD~SK~v~L----~~DR~IefH 121 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTY----KPQIKVYDLANLSLK-----FERHLDAEVVDFEILSDDYSKSVFL----QNDRTIEFH 121 (703)
T ss_pred ceeEecCCCcEEEEeccc----CCceEEEEcccceee-----eeecccccceeEEEeccchhhheEe----ecCceeeeh
Confidence 34566777754443 432 356888888875422 22343 334444445554444443 367776655
Q ss_pred EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018700 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (351)
... ..-..++. ...-..++++.-.-.+++++ ....|+-++++.+.-...+... ...++++..
T Consensus 122 ak~-----------G~hy~~RI-P~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~i 183 (703)
T KOG2321|consen 122 AKY-----------GRHYRTRI-PKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETD-----SGELNVVSI 183 (703)
T ss_pred hhc-----------Ceeeeeec-CcCCccccccCCCccEEEee-cCcceEEEEccccccccccccc-----cccceeeee
Confidence 432 11111111 12234455554443334444 4567888888865444333222 248999999
Q ss_pred CCCCCcEEEeecCCeEEEEEcccCCcCceeecc-----e--------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018700 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-----H--------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (351)
Q Consensus 177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (351)
++....|++|+.+|.|.+||.+....+..+... + |+++.|+.+|- -+++|..+|.+.|||+|. .+
T Consensus 184 n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa-~~ 261 (703)
T KOG2321|consen 184 NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRA-SK 261 (703)
T ss_pred cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEccc-CC
Confidence 999999999999999999999987765554311 1 89999999886 689999999999999998 55
Q ss_pred ceeEe-eCCCCceeEEEecCCCC-CeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018700 244 PIQEL-PGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321 (351)
Q Consensus 244 ~~~~~-~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 321 (351)
|+..- .+..-+|..+.|.+.+. ..++|. ....++|||-.. ++......... .++.++
T Consensus 262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~-------------------Gk~~asiEpt~-~lND~C 320 (703)
T KOG2321|consen 262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT-------------------GKPMASIEPTS-DLNDFC 320 (703)
T ss_pred ceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc-------------------CCceeeccccC-CcCcee
Confidence 54433 34456899999977642 445544 356899999998 78777776544 499999
Q ss_pred eCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 322 WSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 322 ~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+-|++. +++++-.+..+..|=++..
T Consensus 321 ~~p~sG-m~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 321 FVPGSG-MFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eecCCc-eEEEecCCCcceeEEcccc
Confidence 999887 8999998888877766643
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=3.4e-12 Score=108.81 Aligned_cols=186 Identities=12% Similarity=0.175 Sum_probs=145.9
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE------C--------------CCCCcEEEeecCCeEEEE
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW------D--------------PHDVNAVAATCESSVQFW 195 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~------~--------------~~~~~l~~~~~d~~i~iw 195 (351)
++.+..||.+++|+..++.....+..... ..+...+..| + .+...++-|...|.|.+|
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 44457799999999987654444332221 1112233333 1 123456778889999999
Q ss_pred EcccCCcCceee-cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018700 196 DLRSMGKTNSIE-HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (351)
Q Consensus 196 d~~~~~~~~~~~-~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 271 (351)
+...++....+. ..| |.++.++.+-. .|.+++.|+.+..|+... .+.+..+......+.+++.+||+ ..++++
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~-~~l~~a 162 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDG-KILLTA 162 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCC-CEEEec
Confidence 999998888877 334 88998888877 899999999999999987 77788888888899999999999 888888
Q ss_pred eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC-----CCceEEEeeeCCeEEEeecCc
Q 018700 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR-----EPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+. +|++||+++ .+.+..|.+|.++|++++|.-+ |.++|.+...+..+.+|-+..
T Consensus 163 s~--~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 SR--QIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--eEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 75 699999999 9999999999999999999876 676777777888899998765
Q ss_pred c
Q 018700 347 F 347 (351)
Q Consensus 347 ~ 347 (351)
.
T Consensus 222 ~ 222 (541)
T KOG4547|consen 222 E 222 (541)
T ss_pred c
Confidence 3
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7.2e-11 Score=103.71 Aligned_cols=205 Identities=10% Similarity=0.065 Sum_probs=117.4
Q ss_pred ecCCcceeeeeeCCCCCceE--EEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 62 FSHPNEIWDLSSCPFDQRIF--STVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~--~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
......+.+-+|+|||+.++ .+.+.. ....|.+.++.. ...+.+. ...+.....+|+|||+.+++++
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~-------g~~~~lt---~~~g~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLEN-------PAGKKIL---ALQGNQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccC-CCceEEEEECCC-------CCceEee---cCCCCccceEECCCCCEEEEEE
Confidence 33455667889999998643 232111 123466666651 1222333 3344455689999999755555
Q ss_pred ecCC--cE--EEEEcCCC--CCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEE--Eccc-CCcCceeecc
Q 018700 140 IDEE--NI--FLWSLDCS--NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFW--DLRS-MGKTNSIEHA 209 (351)
Q Consensus 140 ~~d~--~v--~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~~~~~ 209 (351)
..+| .+ .+|++..+ .....+... ........+|+|||+.|+..+ .+|...+| ++.. +.....+...
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 3333 33 34666542 122222211 111345679999999888765 45654555 4432 2222223222
Q ss_pred -e-eEEEEcCCCCCcEEEEecCC--CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE-EeeC--CCeEEEEEc
Q 018700 210 -H-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL-SAGT--DSTVNLWLV 282 (351)
Q Consensus 210 -~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~--dg~i~iwd~ 282 (351)
. +....|+|+|+.++++...+ ..|.+||+.. ++ ...+......+....|+|+| +.|+ ++.. ...|.++|+
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISL 402 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CC-eEEccCCCCCccceEECCCC-CEEEEEECCCCCceEEEEEC
Confidence 2 67889999999555554443 3699999876 43 34444334456789999999 5554 4443 346778888
Q ss_pred CC
Q 018700 283 ST 284 (351)
Q Consensus 283 ~~ 284 (351)
..
T Consensus 403 ~~ 404 (428)
T PRK01029 403 IT 404 (428)
T ss_pred CC
Confidence 75
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=9.3e-13 Score=115.00 Aligned_cols=300 Identities=15% Similarity=0.220 Sum_probs=198.4
Q ss_pred eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecC--CcceeeeeeCCCCC---ceEEEEeecCCcc
Q 018700 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH--PNEIWDLSSCPFDQ---RIFSTVFSTGESY 91 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h--~~~v~~i~~~~~~~---~l~~~~~~~~~d~ 91 (351)
+++.++..+|.+..++.+. ...++++++.....+.... .| +-.|-...|+|... .++++ ...
T Consensus 25 ~~~~a~si~p~grdi~lAs-----r~gl~i~dld~p~~ppr~l---~h~tpw~vad~qws~h~a~~~wiVst-----s~q 91 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLAS-----RQGLYIIDLDDPFTPPRWL---HHITPWQVADVQWSPHPAKPYWIVST-----SNQ 91 (1081)
T ss_pred Ccccceeeccccchhhhhh-----hcCeEEEeccCCCCCceee---eccCcchhcceecccCCCCceeEEec-----Ccc
Confidence 3444455555554444432 3456677777654433322 23 24677888887533 34443 444
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v 171 (351)
.-.+|++... ........+.+|...|+.+.|.|..+.++.+++.|..|..||++......-... ......
T Consensus 92 kaiiwnlA~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~----~w~s~a 161 (1081)
T KOG0309|consen 92 KAIIWNLAKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS----SWRSAA 161 (1081)
T ss_pred hhhhhhhhcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee----cccccC
Confidence 5668998731 122344567899999999999999997666668899999999997543332222 122356
Q ss_pred eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018700 172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248 (351)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 248 (351)
..++|+-....+++.+..+.|++||++.+........+| ++.++|+..-...+.+.+.|++|++||..+..+.-...
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 788999888888888889999999999876444333356 88888876544468899999999999988644433344
Q ss_pred eCCCCceeEEEecCCCCCeEEE-eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC-
Q 018700 249 PGHTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE- 326 (351)
Q Consensus 249 ~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 326 (351)
.....+|..-++-|-|+.+.+- --.+..+.+++.+....+... ....+++.+|.+|.+.|..+.|-..+
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~---------~~~~~pVh~F~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV---------FDLNTPVHTFVGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc---------ccCCcceeeecCcchHHHHHhhhhccc
Confidence 4466788888888877433332 222335556555542111000 01257899999999999888775322
Q ss_pred --------CceEEEeeeCCeEEEeecCccc
Q 018700 327 --------PWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 327 --------~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
.+.|++=+.|..+++|-+...+
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 2578999999999999998654
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.6e-11 Score=101.44 Aligned_cols=222 Identities=17% Similarity=0.229 Sum_probs=143.9
Q ss_pred CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee---cCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018700 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS---TGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (351)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~---~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
+.+++++........ . .-|...|..+.+||..+.-..+.+. +|.-..++||.+.... ....+..-.-
T Consensus 146 nev~f~~~~~f~~~~--~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~------~~~~~a~ksF 215 (566)
T KOG2315|consen 146 NEVQFYDLGSFKTIQ--H--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG------QHQPVANKSF 215 (566)
T ss_pred ceEEEEecCCcccee--e--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc------ccchhhhccc
Confidence 556666666532211 1 2367889999999974543333333 3445579999987311 1111111111
Q ss_pred cccceeEEEecCCCCCcEEEEec--CC---------cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-
Q 018700 119 HVGKINCVLWWSSGRHDKLVSID--EE---------NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA- 186 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~--d~---------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 186 (351)
....=..+.|++-|..+++.++. |. ++++.+++.......+.. .++|.++.|+|+++.++++
T Consensus 216 Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k------~GPVhdv~W~~s~~EF~Vvy 289 (566)
T KOG2315|consen 216 FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK------EGPVHDVTWSPSGREFAVVY 289 (566)
T ss_pred cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC------CCCceEEEECCCCCEEEEEE
Confidence 22233457899988876665532 33 567777762222222221 2399999999999877665
Q ss_pred -ecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEecC--CCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018700 187 -TCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAAD--ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE 263 (351)
Q Consensus 187 -~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (351)
-.-.++.|+|++ +.++..+..+.-+++-|+|.|..++++|-. .|.|-+||+.+ .+.+..+... .-+-..|+|+
T Consensus 290 GfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~--~tt~~eW~Pd 365 (566)
T KOG2315|consen 290 GFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA--NTTVFEWSPD 365 (566)
T ss_pred ecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccC--CceEEEEcCC
Confidence 357899999998 566677765557889999999954444433 48999999997 6677777643 3456789999
Q ss_pred CCCeEEEeeC------CCeEEEEEcCC
Q 018700 264 YDGFILSAGT------DSTVNLWLVST 284 (351)
Q Consensus 264 ~~~~l~s~~~------dg~i~iwd~~~ 284 (351)
| .+|+|++. |+.++||+..-
T Consensus 366 G-e~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 366 G-EYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred C-cEEEEEeccccEEecCCeEEEEecC
Confidence 9 88888875 78899999874
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=5.2e-11 Score=101.71 Aligned_cols=182 Identities=12% Similarity=0.139 Sum_probs=136.9
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeec---cccceeEEEec------C-------------CCCCcEEEEecCCc
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDA---HVGKINCVLWW------S-------------SGRHDKLVSIDEEN 144 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~------~-------------~~~~~~~~~~~d~~ 144 (351)
...||.+++|+... .+....+.. -++..++..|. | .+...++.+...|.
T Consensus 11 ~~~~g~l~iw~t~~---------~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 11 STGDGRLRIWDTAK---------NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred cCCCCeEEEEEccC---------ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 37899999999872 233333321 13344444442 2 12223455566899
Q ss_pred EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCc
Q 018700 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKH 222 (351)
Q Consensus 145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~ 222 (351)
|.+|++..++....+... .|-..|.++.++.+-..|.+++.|+.+..|+...+.......... +.+++.+||+.
T Consensus 82 v~~ys~~~g~it~~~st~---~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~- 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTD---KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK- 157 (541)
T ss_pred EEEEEecCCeEEEEEecC---CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-
Confidence 999999976655554433 456699999999988999999999999999999988877777555 99999999998
Q ss_pred EEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCC-----CCCeEEEeeCCCeEEEEEcCC
Q 018700 223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE-----YDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~ 284 (351)
++++++. .|++||+++ ++.+..|.+|.++|.++.|.-. |..+|.+...+..+.+|-+..
T Consensus 158 ~l~~as~--~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTASR--QIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEeccc--eEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7877765 899999998 7889999999999999999776 635555666677889998876
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=9.1e-12 Score=99.52 Aligned_cols=257 Identities=12% Similarity=0.118 Sum_probs=183.7
Q ss_pred CeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCC
Q 018700 54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSG 132 (351)
Q Consensus 54 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~ 132 (351)
++.....+.||.+.|++...-|..+-++++ +.|.+++||--.. .++.-..+ .....+++++.+.++.
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~----s~drtvrv~lkrd--------s~q~wpsI~~~mP~~~~~~~y~~e~ 80 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISV----SEDRTVRVWLKRD--------SGQYWPSIYHYMPSPCSAMEYVSES 80 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEc----cccceeeeEEecc--------ccccCchhhhhCCCCceEeeeeccc
Confidence 344557788999999999999988889887 7999999997442 22222222 2345788999999988
Q ss_pred CCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeE
Q 018700 133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVR 212 (351)
Q Consensus 133 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~ 212 (351)
.. ++.+-..|++.-+.+...-. ..........|...+..+-|+-....+++.+.|..+.---.+.+..+.... ..
T Consensus 81 ~~-L~vg~~ngtvtefs~sedfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~---~~ 155 (404)
T KOG1409|consen 81 RR-LYVGQDNGTVTEFALSEDFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN---FE 155 (404)
T ss_pred eE-EEEEEecceEEEEEhhhhhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE---ee
Confidence 74 66777789999888764222 222333345677799999998888889999988887655556555443322 11
Q ss_pred EEEcCCCCC-cEEEEecCCCeEEEEecccC-CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018700 213 NVDYDTKKK-HLLVTAADESGIHLWDLRML-KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (351)
Q Consensus 213 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 290 (351)
+.+..++-. .+...|...|.|.+-.+... -.++.++.+|...+.+++|.|.. .+|.+|..|..+.+||+.-.
T Consensus 156 ~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~----- 229 (404)
T KOG1409|consen 156 TPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGR----- 229 (404)
T ss_pred ccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCC-----
Confidence 111111111 03444666666665554321 34788899999999999999988 99999999999999999751
Q ss_pred CCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
......+.+|...|..+..-+.-+ .+.+++.||.|.+|+++-.
T Consensus 230 -------------~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 230 -------------KGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -------------cceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccce
Confidence 344556778999999888777666 7999999999999998753
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.9e-11 Score=104.85 Aligned_cols=280 Identities=11% Similarity=0.157 Sum_probs=192.8
Q ss_pred eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe------------EEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018700 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE------------LICEGLFSHPNEIWDLSSCPFDQRIFSTVFS 86 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~ 86 (351)
+....++.+..-+++| +.++.+.++.+...... ...+.+.||.+.|.-+.|+.+.+.|-+
T Consensus 17 L~c~~WNke~gyIAcg----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt---- 88 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACG----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT---- 88 (1189)
T ss_pred EEEEEEcccCCeEEec----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc----
Confidence 3444556677777776 46788888887754321 122568899999999999998888866
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
+..+|.|.||-+-. +++-....-...++-|.+++|+.+|.. +.....||.|.+=.++......+-+...
T Consensus 89 SDt~GlIiVWmlyk-------gsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~--- 157 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYK-------GSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQ--- 157 (1189)
T ss_pred cCCCceEEEEeeec-------ccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchh---
Confidence 47899999999872 233222223345678999999999996 5556789999888777432222222222
Q ss_pred cccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-------cCceee-----cce-eEEEEcC--------CCCCcEEE
Q 018700 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-------KTNSIE-----HAH-VRNVDYD--------TKKKHLLV 225 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~-----~~~-v~~~~~~--------~~~~~~l~ 225 (351)
....+.|++|.+.++.+-.+|.+++||.+..- +..... .++ +..+.|. |+.+ .++
T Consensus 158 ---~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~la 233 (1189)
T KOG2041|consen 158 ---LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLA 233 (1189)
T ss_pred ---eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEE
Confidence 45678999999999999899999999976321 100000 112 5556663 5777 799
Q ss_pred EecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC---------eEEEEEcCCCCCCCCCCcccc
Q 018700 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---------TVNLWLVSTSNHDELPSESLV 296 (351)
Q Consensus 226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~ 296 (351)
++-.+|.+.+..-.+...|+..- ..-.+..+.|+++| .+|+.++.|. .|.+|..-
T Consensus 234 vcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~------------- 297 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY------------- 297 (1189)
T ss_pred EEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-------------
Confidence 99999999887665534444332 33678899999999 9999888643 34443332
Q ss_pred cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+..+.+++.....|++++|-..|- .+|. ..|+.|++=++++
T Consensus 298 -------G~i~gtlkvpg~~It~lsWEg~gL-riA~-AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 298 -------GHIVGTLKVPGSCITGLSWEGTGL-RIAI-AVDSFIYFANIRP 338 (1189)
T ss_pred -------hhheEEEecCCceeeeeEEcCCce-EEEE-EecceEEEEeecc
Confidence 677888888888899999987664 4444 3477888777765
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.1e-11 Score=112.21 Aligned_cols=197 Identities=15% Similarity=0.229 Sum_probs=145.3
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG 201 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 201 (351)
.|....+..+... ++....+..+.+||........++..... .......-+.++++.-++++|+.-+.|.+|+....+
T Consensus 89 wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcce-EEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 3334445555553 44445578999999986544433332221 001122233456667788889999999999988433
Q ss_pred cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018700 202 KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278 (351)
Q Consensus 202 ~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 278 (351)
....+. +| +..+.++-+|+ ++++.++|.++|+|++.+........-+|...|..++|.|. .++|++.|.+.+
T Consensus 167 ~p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 167 KPIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred Ccceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence 333233 55 99999999999 89999999999999999855444456689999999999995 899999999999
Q ss_pred EEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+|+.. +..+..+..|. ..|+.++..++.. +.++++.|+.+++|++..
T Consensus 242 vW~~~--------------------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 242 VWGVN--------------------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEecc--------------------cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 99776 45556787774 4689999999877 899999999999999864
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.5e-12 Score=109.05 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=152.5
Q ss_pred EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018700 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD 135 (351)
Q Consensus 56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 135 (351)
+....+.+|+..|..++--.+.+.++++ +.|++|++|.+..+..+ ..+..+..+++.|+.+|.++.|-.+.+
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSA----SkDKTVKLWSik~EgD~--~~tsaCQfTY~aHkk~i~~igfL~~lr-- 797 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISA----SKDKTVKLWSIKPEGDE--IGTSACQFTYQAHKKPIHDIGFLADLR-- 797 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeec----cCCceEEEEEeccccCc--cccceeeeEhhhccCcccceeeeeccc--
Confidence 4446678999999999877777777776 79999999999854322 223456778899999999999999877
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecc-----
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA----- 209 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~----- 209 (351)
.+++ .|+-|.+||.--+....+.......+....|.++.- -+...++++ +...+|+++|.+.++-...++..
T Consensus 798 ~i~S-cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 798 SIAS-CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred eeee-ccCcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 3444 488999999876555444444333332223333321 123445555 57899999999988765555422
Q ss_pred e--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE-EEcCC
Q 018700 210 H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL-WLVST 284 (351)
Q Consensus 210 ~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~ 284 (351)
. +.+++..+.|. .++.+-.+|.|.+.|.|+ ++.+..+..-.-....++ .|.. ..|+....|.++.+ |....
T Consensus 876 na~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 876 NALTRAIAVADKGN-KLAAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred chheeEEEeccCcc-hhhHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcC
Confidence 1 89999999998 789999999999999998 666666655444444444 4555 67888888888888 87655
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.9e-11 Score=105.59 Aligned_cols=242 Identities=10% Similarity=0.075 Sum_probs=168.7
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC------CCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL------NSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 137 (351)
......++.|+....++++ ||.||.++|-.+.+..... ...+...-+++.+|.+.|.-+.|+.+.+. +-
T Consensus 13 nnvkL~c~~WNke~gyIAc----gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIAC----GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEe----ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-cc
Confidence 3457789999998888877 5899999999987542221 11233455678999999999999998884 44
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc-eeecceeEEEEc
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SIEHAHVRNVDY 216 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~v~~~~~ 216 (351)
++..+|-|.+|-+-++.-........ ..+.|.+++|+.+|..+...-.||.|.+=.++..+.-. .++..+...+.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnR---nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNR---NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCc---CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 44668999999998776555544433 23489999999999999999999999887776432211 222122678899
Q ss_pred CCCCCcEEEEecCCCeEEEEecccCC------cceeE----eeCCCCceeEEEec--------CCCCCeEEEeeCCCeEE
Q 018700 217 DTKKKHLLVTAADESGIHLWDLRMLK------APIQE----LPGHTHWTWAVCCN--------PEYDGFILSAGTDSTVN 278 (351)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~----~~~~~~~v~~~~~~--------~~~~~~l~s~~~dg~i~ 278 (351)
++|.+ .++.+-.+|.+.+||....- .+... +......|-.+.|. |+. ..|+.+-..|.+.
T Consensus 165 s~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 165 SEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQ 242 (1189)
T ss_pred cccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceeh
Confidence 99998 56668889999999976311 11111 11122235556553 455 7888899999888
Q ss_pred EEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018700 279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
|..-.. ...++..-.+ -.|.+..|+++|. +||.+|.|
T Consensus 243 iMR~eN------------------D~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSEN------------------DPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGND 279 (1189)
T ss_pred hhhhcC------------------CCCCeEEecc--cEeecceecCCCc-EEEEccCc
Confidence 865554 1333322222 4688999999999 88888865
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.37 E-value=5.3e-10 Score=108.04 Aligned_cols=256 Identities=9% Similarity=0.108 Sum_probs=153.2
Q ss_pred eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec--------------cccceeEEEecCCCCCc
Q 018700 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--------------HVGKINCVLWWSSGRHD 135 (351)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~ 135 (351)
.+++++.+..++.+ ....+.|+++|... ..+..+.. +-.....+++.+++..+
T Consensus 572 gvavd~~~g~lyVa---Ds~n~rI~v~d~~G----------~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 572 KLAIDLLNNRLFIS---DSNHNRIVVTDLDG----------NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred eEEEECCCCeEEEE---ECCCCeEEEEeCCC----------CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 57777765555554 36677899999762 22222211 11235789999988754
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccc-----c-------CcccceeeeEECCCCCcE-EEeecCCeEEEEEcccCCc
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQS-----S-------GMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGK 202 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----~-------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~ 202 (351)
+++-...+.|+++|+.++. ...+..... . .......+++++|++..+ ++...++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 4444667889999987532 111110000 0 001234688999955444 5556788999999876532
Q ss_pred Cce--------ee--------cceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee------------EeeCC---
Q 018700 203 TNS--------IE--------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ------------ELPGH--- 251 (351)
Q Consensus 203 ~~~--------~~--------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~--- 251 (351)
... .. ......++++|++..++++-..++.|++||+.+....+. .+-.+
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 110 00 001678999999986777777889999999875321110 00000
Q ss_pred -----CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018700 252 -----THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (351)
Q Consensus 252 -----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (351)
-.....++++++| .++++-..++.|++||..........-....... .+. ...+.-....+++++++|
T Consensus 798 g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~---dG~---~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK---DGK---ALKAQLSEPAGLALGENG 870 (1057)
T ss_pred hhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC---CCc---ccccccCCceEEEEeCCC
Confidence 1123588999999 8888888999999999976211100000000000 000 011122346789999999
Q ss_pred CceEEEeeeCCeEEEeecCcc
Q 018700 327 PWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 327 ~~~l~s~~~dg~v~vw~~~~~ 347 (351)
+ ++++-+.++.|++||+.+.
T Consensus 871 ~-lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 871 R-LFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred C-EEEEECCCCEEEEEECCCC
Confidence 8 8888889999999998753
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=4.4e-12 Score=120.55 Aligned_cols=190 Identities=13% Similarity=0.215 Sum_probs=144.0
Q ss_pred ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018700 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 197 (351)
.+-..|.++.-+|...+ +++++.||.|++|....+......... +. ..|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus 2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~---g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTA---GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeecc---Cc-chhhhhhhcccCCceeeeccCCceeeccc
Confidence 44566788888888885 888899999999999865544433332 22 58999999999999999999999999998
Q ss_pred ccCCcCceeecce--eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018700 198 RSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (351)
Q Consensus 198 ~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 272 (351)
. .++....+... ...+.|-. . ++++++ .++.+.+||.-.+...-..-..|.+.++++++.|.. .+|++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecC
Confidence 7 33333333222 56666654 2 556554 568999999765333222226899999999999999 9999999
Q ss_pred CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
.+|.|++||++. .+++++++. ++ ... ++++++..|.++||++..+
T Consensus 2356 r~G~v~l~D~rq-------------------rql~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQ-------------------RQLRHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcCcEEEeehHH-------------------HHHHHHhhh---------hh-hhh-eeeccCcccceEEEEcccc
Confidence 999999999998 777777755 44 334 8999999999999999865
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=117.41 Aligned_cols=188 Identities=12% Similarity=0.217 Sum_probs=139.9
Q ss_pred ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEe
Q 018700 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
..+-..|.++.-+|...+.++ |+.||.|++|... ..+.+..++ .....|+.+.|+.+|.. +-++.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Ylt----gs~dgsv~~~~w~---------~~~~v~~~rt~g~s~vtr~~f~~qGnk-~~i~d 2270 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLT----GSQDGSVRMFEWG---------HGQQVVCFRTAGNSRVTRSRFNHQGNK-FGIVD 2270 (2439)
T ss_pred ecccCceeeecCCCCCceEEe----cCCCceEEEEecc---------CCCeEEEeeccCcchhhhhhhcccCCc-eeeec
Confidence 345578888888998888877 5899999999987 445444443 23488999999999985 56666
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee---cCCeEEEEEcccCCcCceeecce---eEEE
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~---v~~~ 214 (351)
.||.+.+|.... ..+. ....|.....++.|-. ..+++++ .++.+.+||..-.....-+...| ++++
T Consensus 2271 ~dg~l~l~q~~p----k~~~--s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2271 GDGDLSLWQASP----KPYT--SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred cCCceeecccCC----ccee--ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence 799999999871 1111 1224555777777764 5566554 57899999976443333333344 9999
Q ss_pred EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
++-|..+ +|++|+.+|.|++||++. .+.+++++. ++ .. .++++|+..|.|+||++..
T Consensus 2343 ~~~P~~q-llisggr~G~v~l~D~rq-rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2343 AYAPKHQ-LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEcCcce-EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh-hh-heeeccCcccceEEEEccc
Confidence 9999998 999999999999999997 556665553 44 33 8999999999999999987
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.2e-09 Score=93.86 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=117.6
Q ss_pred cceeeeeeCCCCCc-eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--C
Q 018700 66 NEIWDLSSCPFDQR-IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--E 142 (351)
Q Consensus 66 ~~v~~i~~~~~~~~-l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d 142 (351)
+.+....|+|+++. ++.+.+. +....|.++|+. +++. ..+....+......|+|||+.++++.+. +
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~-~~~~~Iyv~dl~---------tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYG-ERKPTLYKYNLY---------TGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEcc-CCCCEEEEEECC---------CCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 36778999999986 5544322 224568888876 3332 2222345556678899999976655543 4
Q ss_pred CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---CeEEEEEcccCCcCceeecceeEEEEcCCC
Q 018700 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWDLRSMGKTNSIEHAHVRNVDYDTK 219 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~ 219 (351)
..|.++|+.++. ...+.... + ......|+|||+.|+..+.. ..|+++|+.+++.......+. ....|+|+
T Consensus 257 ~~Iy~~dl~~g~-~~~LT~~~--~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPD 329 (419)
T PRK04043 257 PDIYLYDTNTKT-LTQITNYP--G---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTY 329 (419)
T ss_pred cEEEEEECCCCc-EEEcccCC--C---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCC
Confidence 568888887543 22222111 1 23345799999988877632 268888888776533322222 23489999
Q ss_pred CCcEEEEecCC--------CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe--EEEEEcC
Q 018700 220 KKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST--VNLWLVS 283 (351)
Q Consensus 220 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~ 283 (351)
|+.++++.... ..|.+.|+.. + ..+.+... .......|+|+|..++++....+. +.+.++.
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNS-D-YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCC-C-CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 99666655443 3688888875 3 24445433 233468899999434444433343 4444554
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-10 Score=91.76 Aligned_cols=251 Identities=15% Similarity=0.255 Sum_probs=166.2
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc------------cceeEEEecCCC
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------GKINCVLWWSSG 132 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~ 132 (351)
...|+++.|...|.+|++ |...|.|.+|.-+...+ -..+....+++|. ..|..+.|..++
T Consensus 26 ad~ItaVefd~tg~Ylat----GDkgGRVvlfer~~s~~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 26 ADKITAVEFDETGLYLAT----GDKGGRVVLFEREKSYG----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred cceeeEEEeccccceEee----cCCCceEEEeecccccc----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence 467889999988888877 46678899987653211 0122233345553 357888887654
Q ss_pred -CCcEEEEecCCcEEEEEcCCCCC----------------------Ccccccc----------------cccCcccceee
Q 018700 133 -RHDKLVSIDEENIFLWSLDCSNK----------------------NAQVQSK----------------QSSGMLHYLSG 173 (351)
Q Consensus 133 -~~~~~~~~~d~~v~iwd~~~~~~----------------------~~~~~~~----------------~~~~~~~~v~~ 173 (351)
...++.++.|.+|++|.+..... ...+... ....|..-+.+
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 44477788899999999864310 0000000 11345556888
Q ss_pred eEECCCCCcEEEeecCCeEEEEEcccCCcCceee--cce--------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018700 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH--------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (351)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (351)
++|+.|...+++ +.|-.|.+|.++-......+. .+| |++..|+|...+++.-.+..|.|++-|+|...-
T Consensus 178 iS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 178 ISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 999987776665 457789999987543322221 122 899999999887888888999999999995221
Q ss_pred -----ceeE----------eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018700 244 -----PIQE----------LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308 (351)
Q Consensus 244 -----~~~~----------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (351)
.+.. +..-...|..+.|++.| +++++-+. -+++|||.+.. ..++.
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~------------------k~pik 316 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMA------------------KNPIK 316 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccc------------------cCCce
Confidence 1111 11223568889999999 99987765 47999999972 45555
Q ss_pred eecccc------------ceE---EEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 309 SYSDYE------------DSV---YGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 309 ~~~~~~------------~~v---~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
+..-|. ..| ..+.|+.+.+ .+.+|+..+..-+|-..
T Consensus 317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eechHHHHHHHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeeccc
Confidence 554332 122 3578888887 78899888887777643
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=5e-11 Score=108.10 Aligned_cols=194 Identities=12% Similarity=0.148 Sum_probs=142.3
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccce-----eEEEecCCCCCcEEEEe
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~~~~~ 140 (351)
+.|....+......++.+ ..+..+.+|+.. .......+ .+...+ .-+.++++.-+ +.+++
T Consensus 88 ~wi~g~~l~~e~k~i~l~----~~~ns~~i~d~~---------~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~-i~~gs 152 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALV----TSRNSLLIRDSK---------NSSVLSKI-QSDERCTLYSSLIIGDSAEELY-IASGS 152 (967)
T ss_pred ccccccchhhhcceEEEE----EcCceEEEEecc---------cCceehhc-CCCceEEEEeEEEEeccCcEEE-EEecc
Confidence 455555566666677765 367789999987 33333333 222221 11223333322 34446
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD 217 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~ 217 (351)
.-+.|.+|+....+... ...+|...+.++.|+-+|.++++.+.|.++++|++++.+.......+| +..+.|.
T Consensus 153 v~~~iivW~~~~dn~p~-----~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPI-----RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccCCcc-----eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 67999999998433222 345788899999999999999999999999999999988776444456 8899999
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
|. .++++++|.+.++|+.. ...+..+..|. ..+..++..+.. ..++|++.|+.+++||....
T Consensus 228 ~n---~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN---RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cc---eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence 88 58999999999999776 44566777776 568999998888 99999999999999998764
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=4.1e-09 Score=88.52 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=147.3
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe---------cCCcEEEEEcCCCCCCccccc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI---------DEENIFLWSLDCSNKNAQVQS 161 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---------~d~~v~iwd~~~~~~~~~~~~ 161 (351)
+.|.+.|.. +.+.+.++..-..+- .+ ++|+++.++++.+ .+..|.+||..+.+...++..
T Consensus 27 ~~v~ViD~~---------~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~ 95 (352)
T TIGR02658 27 TQVYTIDGE---------AGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL 95 (352)
T ss_pred ceEEEEECC---------CCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc
Confidence 789999988 667777775544333 34 9999998777778 789999999998766555443
Q ss_pred ccccC--cccceeeeEECCCCCcEEEee-c-CCeEEEEEcccCCcCceeecce---------------------------
Q 018700 162 KQSSG--MLHYLSGGAWDPHDVNAVAAT-C-ESSVQFWDLRSMGKTNSIEHAH--------------------------- 210 (351)
Q Consensus 162 ~~~~~--~~~~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~--------------------------- 210 (351)
...+. .......++++|||++|++.. . +..|.+.|+.+++.+..+..+.
T Consensus 96 p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 96 PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYG 175 (352)
T ss_pred CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEec
Confidence 22100 112344789999999999775 3 7899999999887655443211
Q ss_pred ------eEEEE-c-------------CC-CCCcEEEEecCCCeEEEEecccC----CcceeEeeC-------CCCceeEE
Q 018700 211 ------VRNVD-Y-------------DT-KKKHLLVTAADESGIHLWDLRML----KAPIQELPG-------HTHWTWAV 258 (351)
Q Consensus 211 ------v~~~~-~-------------~~-~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~-------~~~~v~~~ 258 (351)
..... | .+ +++ ++.+..+ |+|.+.|+... ..+...+.. ......-+
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 00111 1 22 565 4444444 89999996431 122222211 12334459
Q ss_pred EecCCCCCeEEEee----------CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC-
Q 018700 259 CCNPEYDGFILSAG----------TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP- 327 (351)
Q Consensus 259 ~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 327 (351)
+++|++ ..++... ..+.|.++|..+ .+.+..+.. ...+..++++||++
T Consensus 254 a~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t-------------------~kvi~~i~v-G~~~~~iavS~Dgkp 312 (352)
T TIGR02658 254 AYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKT-------------------GKRLRKIEL-GHEIDSINVSQDAKP 312 (352)
T ss_pred EEcCCC-CEEEEEecCCccccccCCCCEEEEEECCC-------------------CeEEEEEeC-CCceeeEEECCCCCe
Confidence 999999 5555432 225799999998 777777754 34689999999998
Q ss_pred ceEEEeeeCCeEEEeecCcc
Q 018700 328 WIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 328 ~~l~s~~~dg~v~vw~~~~~ 347 (351)
.++++...++.|.+.|+.+.
T Consensus 313 ~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEeCCCCCcEEEEECcCC
Confidence 65666667899999998764
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=1.4e-11 Score=107.87 Aligned_cols=215 Identities=18% Similarity=0.252 Sum_probs=157.0
Q ss_pred cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC--CcEEEe
Q 018700 109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAA 186 (351)
Q Consensus 109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 186 (351)
+......++ -.+.+..+..+|.|+.+++|+.. -+.+.|+.........+.....- .+....|+|.. .+-++.
T Consensus 14 tf~kslsl~-v~~~~~a~si~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw---~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 14 TFGKSLSLK-VDGGFNAVSINPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPW---QVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred ccCceeEEE-ecCcccceeeccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcc---hhcceecccCCCCceeEEe
Confidence 443333342 34577888999999975555543 36677887654444443322111 57778888764 344444
Q ss_pred ecCCeEEEEEcccCC--cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018700 187 TCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (351)
Q Consensus 187 ~~d~~i~iwd~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 261 (351)
.....-.+|.+.... .+.-...+| ++.+.|+|+.+.++++++-|-.+..||++.+..++..+..-......|+|+
T Consensus 88 ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 88 TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 445556688886443 333334556 999999999998999999999999999999999998888777788999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018700 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341 (351)
Q Consensus 262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v 341 (351)
-..+..+| .+....|++||.+.+ ..++..+++|...|+.++|..-....+.+++.|++|+.
T Consensus 168 yk~p~vla-sshg~~i~vwd~r~g------------------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 168 YKDPNVLA-SSHGNDIFVWDLRKG------------------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred ccCcchhh-hccCCceEEEeccCC------------------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 88745554 455667999999983 67888999999999999998755447889999999999
Q ss_pred eecCccc
Q 018700 342 ESVKPFL 348 (351)
Q Consensus 342 w~~~~~~ 348 (351)
|+.++..
T Consensus 229 w~y~kSt 235 (1081)
T KOG0309|consen 229 WDYSKST 235 (1081)
T ss_pred ecccccc
Confidence 9987644
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.31 E-value=4.5e-11 Score=92.08 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=134.1
Q ss_pred eeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee----
Q 018700 112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---- 187 (351)
Q Consensus 112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---- 187 (351)
+...+..|.++-.+-+.+-.+.. ++.+..||.+.+++.+.. ..........|. ...+.+....++.+.++.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~ 155 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKD---LALMSRIPSIHS-GSASRKICRHGNSILSGGCGNW 155 (319)
T ss_pred ceeeeeccCCCCCcccccccCCc-eEecCCCceEEEEechHH---Hhhhhhcccccc-cccccceeecccEEecCCcceE
Confidence 34444455444333333333332 666688999999998742 222211111111 122223333445444432
Q ss_pred -cCCeEEEEEcccCCcCceee-cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018700 188 -CESSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY 264 (351)
Q Consensus 188 -~d~~i~iwd~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (351)
.-+..+.|+++..+....-. ... +.+++-+|..++++++|++||.+.+||.|....+...+..|..+++.+-|+|..
T Consensus 156 n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred eeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC
Confidence 23456677766443222221 112 999999999988999999999999999998777888889999999999999999
Q ss_pred CCeEEEeeCCCeEEEEEcCCCCCCCCCCc-ccccCCccccccccee-------eccccceEEEEEeCCCCCceEEEeeeC
Q 018700 265 DGFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESPNQRANSLLNS-------YSDYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
+..|++++.||.+--||....... ...+ +...+|.. +.++.. +......|+++... |+ .|++|+.-
T Consensus 236 p~~Lft~sedGslw~wdas~~~l~-i~~~~s~~s~WLs--gD~v~s~i~i~~ll~~~~~SinsfDV~--g~-~lVcgtd~ 309 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDASTTFLS-ISNQASVISSWLS--GDPVKSRIEITSLLPSRSLSINSFDVL--GP-CLVCGTDA 309 (319)
T ss_pred chheeEecCCCcEEEEcCCCceEE-ecCcccccccccc--CCcccceEeeeccccccceeeeeeecc--Cc-eEEecccc
Confidence 899999999999999998842110 0000 11111111 111111 12223356665554 56 78899988
Q ss_pred CeEEEee
Q 018700 337 GRVVVES 343 (351)
Q Consensus 337 g~v~vw~ 343 (351)
+.|++++
T Consensus 310 eaIyl~~ 316 (319)
T KOG4714|consen 310 EAIYLTR 316 (319)
T ss_pred ceEEEec
Confidence 8898875
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.4e-09 Score=93.55 Aligned_cols=192 Identities=10% Similarity=0.087 Sum_probs=112.0
Q ss_pred ceeEEEecCCCCCcEE-EEe--cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee---cCCeEEEE
Q 018700 122 KINCVLWWSSGRHDKL-VSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---CESSVQFW 195 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~-~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iw 195 (351)
.+....|+|+|+.+++ ++. .+..|+++|+.++.... +.. ..+ ......|+||++.++... .+..|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~--~~g---~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS--SQG---MLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec--CCC---cEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 7788999999986344 442 24679999997654322 221 112 455678999998877653 24578888
Q ss_pred EcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018700 196 DLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (351)
Q Consensus 196 d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 272 (351)
|+.+++......... .....|+|||+.++++....+ .|+++|+.. ++ .+.+..... ....|+|+| ..|+-..
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~rlt~~g~--~~~~~SPDG-~~Ia~~~ 337 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQVVFHGK--NNSSVSTYK-NYIVYSS 337 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEeCccCCC--cCceECCCC-CEEEEEE
Confidence 987775332222121 345689999986666655544 567777764 33 333322111 234899999 5554443
Q ss_pred -CC--------CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe--EEE
Q 018700 273 -TD--------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR--VVV 341 (351)
Q Consensus 273 -~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--v~v 341 (351)
.. ..|.+.|+.. +.. ..+.... ......|+|||+.++.+....+. +.+
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~-------------------g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNS-------------------DYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred cCCCcccCCCCcEEEEEECCC-------------------CCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 32 2577777765 322 2222221 22358899999955555443333 555
Q ss_pred eecC
Q 018700 342 ESVK 345 (351)
Q Consensus 342 w~~~ 345 (351)
.+++
T Consensus 397 ~~l~ 400 (419)
T PRK04043 397 IRLN 400 (419)
T ss_pred EecC
Confidence 5554
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.28 E-value=6.7e-09 Score=81.76 Aligned_cols=220 Identities=11% Similarity=0.140 Sum_probs=132.6
Q ss_pred EEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce
Q 018700 126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS 205 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 205 (351)
++.+++|+ ++|.-.|..|.|-..++.-....-.....++....-.-++|+||+..|+.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCCCc--EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 56678888 677777888887766643222111111122233367789999999999999999999999998533 233
Q ss_pred eecce---------eEEEEcCCCC-----CcEEEEecCCCeEEEEeccc----CCcceeEee--C-CCCceeEEEecCCC
Q 018700 206 IEHAH---------VRNVDYDTKK-----KHLLVTAADESGIHLWDLRM----LKAPIQELP--G-HTHWTWAVCCNPEY 264 (351)
Q Consensus 206 ~~~~~---------v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~--~-~~~~v~~~~~~~~~ 264 (351)
+.... |..+.|.+.. .+.|++-...|.++-|-+.. .-+..+.+. . +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 33221 6666664432 23455566778777776532 112233333 2 46789999999998
Q ss_pred CCeEEEeeC-CC----------eEEEEEcCCCCCCCCCCccc-ccCCcc----ccccc--ceee---ccccceEEEEEeC
Q 018700 265 DGFILSAGT-DS----------TVNLWLVSTSNHDELPSESL-VESPNQ----RANSL--LNSY---SDYEDSVYGLAWS 323 (351)
Q Consensus 265 ~~~l~s~~~-dg----------~i~iwd~~~~~~~~~~~~~~-~~~~~~----~~~~~--~~~~---~~~~~~v~~~~~~ 323 (351)
++|+.||. .. -+..|.+-...+--...... +..... .-.+. +..+ ......|..|..|
T Consensus 160 -~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 160 -RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred -CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 66666653 11 36677766543322211111 100000 00000 0011 1235679999999
Q ss_pred CCCCceEEEeeeCCeEEEeecCccccc
Q 018700 324 SREPWIFASLSYDGRVVVESVKPFLSR 350 (351)
Q Consensus 324 ~~~~~~l~s~~~dg~v~vw~~~~~~~~ 350 (351)
|||+ +||+...+|.|.+|+++....+
T Consensus 239 Pdg~-~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 239 PDGS-LLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CCCC-EEEEEEcCCeEEEEecCcchhh
Confidence 9999 9999999999999999876543
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=1.6e-08 Score=84.83 Aligned_cols=143 Identities=11% Similarity=0.159 Sum_probs=103.7
Q ss_pred ccccceeEEEecCCCCCcEEEEecCC-cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018700 118 AHVGKINCVLWWSSGRHDKLVSIDEE-NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 196 (351)
+|.+.|.-..+..+++. ++.+..|| .+-|+|..++... . .. .....|.++..+|+|++++++.....+.+.|
T Consensus 357 ~~~~~VrY~r~~~~~e~-~vigt~dgD~l~iyd~~~~e~k-r-~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 357 GKKGGVRYRRIQVDPEG-DVIGTNDGDKLGIYDKDGGEVK-R-IE----KDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCCCceEEEEEccCCcc-eEEeccCCceEEEEecCCceEE-E-ee----CCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 67777888888888774 66776676 8999999864321 1 11 1233799999999999999999999999999
Q ss_pred cccCCcCceeecce--eEEEEcCCCCCcEEEEecCCC----eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE
Q 018700 197 LRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADES----GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS 270 (351)
Q Consensus 197 ~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 270 (351)
+.++.....-+... |..++|+|+++ ++|-+--+| .|++||+.. .+ +.........-.+-+|.|++ ++|.-
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~-~K-iy~vTT~ta~DfsPaFD~d~-ryLYf 505 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG-GK-IYDVTTPTAYDFSPAFDPDG-RYLYF 505 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC-Ce-EEEecCCcccccCcccCCCC-cEEEE
Confidence 99987543333222 99999999999 787776665 699999985 33 44444344445567888888 66553
Q ss_pred e
Q 018700 271 A 271 (351)
Q Consensus 271 ~ 271 (351)
-
T Consensus 506 L 506 (668)
T COG4946 506 L 506 (668)
T ss_pred E
Confidence 3
No 276
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.25 E-value=2.9e-08 Score=81.16 Aligned_cols=224 Identities=14% Similarity=0.069 Sum_probs=138.9
Q ss_pred eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEec-CCCCCcEEEEecCCcEEEE
Q 018700 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW-SSGRHDKLVSIDEENIFLW 148 (351)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~d~~v~iw 148 (351)
++.|.+....|+.+ .-..+.|..|+.. .... ..+.... ...+++. +++. ++++.. +.+.++
T Consensus 4 gp~~d~~~g~l~~~---D~~~~~i~~~~~~---------~~~~-~~~~~~~--~~G~~~~~~~g~--l~v~~~-~~~~~~ 65 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV---DIPGGRIYRVDPD---------TGEV-EVIDLPG--PNGMAFDRPDGR--LYVADS-GGIAVV 65 (246)
T ss_dssp EEEEETTTTEEEEE---ETTTTEEEEEETT---------TTEE-EEEESSS--EEEEEEECTTSE--EEEEET-TCEEEE
T ss_pred ceEEECCCCEEEEE---EcCCCEEEEEECC---------CCeE-EEEecCC--CceEEEEccCCE--EEEEEc-CceEEE
Confidence 56788855555554 3567788888876 2222 2222222 6667777 6655 555544 455666
Q ss_pred EcCCCCCCcccccccccC-cccceeeeEECCCCCcEEEeecC--------CeEEEEEcccCCcCceeecce-eEEEEcCC
Q 018700 149 SLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHDVNAVAATCE--------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDT 218 (351)
Q Consensus 149 d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~ 218 (351)
|+.++. ...+....... .....+++++.|+|+..++.... |.|..++.. ++......... .+.++|+|
T Consensus 66 d~~~g~-~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 66 DPDTGK-VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp ETTTTE-EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET
T ss_pred ecCCCc-EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC
Confidence 887642 22222221111 34578999999999966655432 557777766 44333333222 89999999
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcce------eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPI------QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 292 (351)
+++.++++-+..+.|..|++......+ ..+.......-.+++..+| ++.++....+.|.++|.+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~--------- 213 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD--------- 213 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT---------
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC---------
Confidence 998666777888999999997533311 1222222347889999999 888877788899999986
Q ss_pred cccccCCcccccccceeeccccceEEEEEe-CCCCCceEEEee
Q 018700 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAW-SSREPWIFASLS 334 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~ 334 (351)
++.+..+......+++++| -++...+++|.+
T Consensus 214 -----------G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 214 -----------GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -----------SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred -----------ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 5666666554457899999 466564666543
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.18 E-value=7.5e-08 Score=91.80 Aligned_cols=246 Identities=12% Similarity=0.141 Sum_probs=148.5
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~ 143 (351)
..+.|.++.|.++...++.+ -.+|.|.+...+. .+....+.....-...|.+++||||+.- ++....++
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~----~~~Gdi~~~~~~~------~~~~~~~E~VG~vd~GI~a~~WSPD~El-la~vT~~~ 142 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIA----LASGDIILVREDP------DPDEDEIEIVGSVDSGILAASWSPDEEL-LALVTGEG 142 (928)
T ss_pred CCCcEEEEEeccCCCcEEEE----ECCceEEEEEccC------CCCCceeEEEEEEcCcEEEEEECCCcCE-EEEEeCCC
Confidence 34789999999998887776 3677788873321 0012233333345678999999999995 44444466
Q ss_pred cEEEEEcCC-----------------------CCCCcccc------------ccc----ccC---cccceeeeEECCCCC
Q 018700 144 NIFLWSLDC-----------------------SNKNAQVQ------------SKQ----SSG---MLHYLSGGAWDPHDV 181 (351)
Q Consensus 144 ~v~iwd~~~-----------------------~~~~~~~~------------~~~----~~~---~~~~v~~~~~~~~~~ 181 (351)
++.+.+-+= |++..++. ... ..+ ....-..++|-.||.
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 776653210 00000000 000 000 122456789999999
Q ss_pred cEEEeec------CCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecC---CCeEEEEecccCCcceeEee-
Q 018700 182 NAVAATC------ESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELP- 249 (351)
Q Consensus 182 ~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~- 249 (351)
++++.+- -..++||+-+ |....+.+... -.+++|.|.|. ++++... ...|.+|..+ +.....|.
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErN--GLrhgeF~l 298 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERN--GLRHGEFTL 298 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecC--CcEeeeEec
Confidence 9998763 2589999966 54433333222 56899999998 7776653 3467777744 32222222
Q ss_pred ---CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCCC
Q 018700 250 ---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR 325 (351)
Q Consensus 250 ---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 325 (351)
.....|..+.|++++ .+||..-.|. |.+|-+.+.. +-+-+.+.. ....+..+.|+|.
T Consensus 299 ~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH-----------------WYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH-----------------WYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE-----------------EEEEEEEEccCCCCCCceEECCC
Confidence 345679999999999 8998877665 9999887621 222222321 1223445888887
Q ss_pred CCceEEEeeeCCeEEEee
Q 018700 326 EPWIFASLSYDGRVVVES 343 (351)
Q Consensus 326 ~~~~l~s~~~dg~v~vw~ 343 (351)
.+..|.....+|.+..++
T Consensus 360 ~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCEEEEEecCCcEEEEE
Confidence 665566666556665544
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.18 E-value=4.6e-08 Score=94.94 Aligned_cols=201 Identities=12% Similarity=0.098 Sum_probs=132.4
Q ss_pred ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-----------------ccceeEEEec
Q 018700 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-----------------VGKINCVLWW 129 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~~~~~ 129 (351)
....+++.+++..|+++ ....+.|+++|... ..+.++.+- -.....++++
T Consensus 625 ~P~GIavd~~gn~LYVa---Dt~n~~Ir~id~~~----------~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d 691 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVA---DTENHALREIDFVN----------ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE 691 (1057)
T ss_pred CCcEEEEeCCCCEEEEE---eCCCceEEEEecCC----------CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe
Confidence 35788999888776665 34567899998762 122222110 1123578999
Q ss_pred CCCCCcEEEEecCCcEEEEEcCCCCCCcccccc----c------ccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcc
Q 018700 130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----Q------SSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLR 198 (351)
Q Consensus 130 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~------~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~ 198 (351)
|++..++++.+.++.|++||..++... .+... . .........+++++|+++.|+++ +.++.|++||+.
T Consensus 692 p~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 692 PVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK 770 (1057)
T ss_pred cCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 966655566577899999998754211 00000 0 00011246779999999866655 567999999998
Q ss_pred cCCcCc-------------eee----------cceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-----
Q 018700 199 SMGKTN-------------SIE----------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG----- 250 (351)
Q Consensus 199 ~~~~~~-------------~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 250 (351)
++.... .+. ..+...++++++|. ++++-..++.|++||... +. +..+.+
T Consensus 771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t-g~-v~tiaG~G~~G 847 (1057)
T PLN02919 771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT-KR-VTTLAGTGKAG 847 (1057)
T ss_pred CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC-Ce-EEEEeccCCcC
Confidence 654211 000 01167899999997 888888999999999875 32 333322
Q ss_pred ---------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 251 ---------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 251 ---------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
.-.....|+++++| +++++-+.++.|++||+.+.
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCC
Confidence 12246789999999 88888899999999999874
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=1e-08 Score=79.77 Aligned_cols=184 Identities=10% Similarity=0.052 Sum_probs=124.7
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
||.-|.+.+|...+ ..........|...|+-+.=..+...-+..++.|.++++.++.-+.....+.. . .
T Consensus 90 gG~~g~fd~~~~~t--------n~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~--~ 158 (344)
T KOG4532|consen 90 GGASGQFDLFACNT--------NDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-Q--N 158 (344)
T ss_pred ccccceeeeecccC--------cccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-c--c
Confidence 57889999999873 22333444455554443322223332366777888999988874322211111 1 0
Q ss_pred cccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecc----eeEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018700 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHA----HVRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (351)
-.+.+++++++++++++.+....|..|.+.... .+..+..+ +-.+..|+.... .+|++..||++.|||+|..
T Consensus 159 --~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 159 --LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred --cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence 148889999999999999999999999887542 22222211 167888998887 8999999999999999987
Q ss_pred CcceeEe----eCCCCceeEEEecCCCC-CeEEEeeCCCeEEEEEcCC
Q 018700 242 KAPIQEL----PGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 242 ~~~~~~~----~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~ 284 (351)
..+.... ..|.+.+..+.|++.|. .+|+..-.-+.+.+-|++.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 6655443 35889999999998773 2344444467899999998
No 280
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=3.2e-11 Score=107.79 Aligned_cols=213 Identities=11% Similarity=0.125 Sum_probs=152.6
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
+.+..|...-+|++|+-..+.|+++ .-.|.|+++++. ++........|.++|+-+.-+.+|..++..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG----~~~Geik~~nv~---------sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVG----SHAGEIKIFNVS---------SGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEee----eccceEEEEEcc---------CccccccccccccccccccccCCcceeeee
Confidence 4566788899999999988888884 789999999998 677778888999999999999999853433
Q ss_pred EecC-CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------e
Q 018700 139 SIDE-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V 211 (351)
Q Consensus 139 ~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v 211 (351)
++.. --..+|++..-......+. .-.++.|+.....-+.|+......+||++++.+..++..+. -
T Consensus 1162 ss~S~PlsaLW~~~s~~~~~Hsf~--------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFD--------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred ccccCchHHHhccccccCcccccc--------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence 3333 3678999985333332222 34567787655555566666778999999998777643222 6
Q ss_pred EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018700 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (351)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 291 (351)
++..|+|+.. +++ .||. +||+|. .+.++.|...+..+. -.|+|.| .-++..+. |||+++
T Consensus 1234 n~a~FsP~D~-LIl---ndGv--LWDvR~-~~aIh~FD~ft~~~~-G~FHP~g-~eVIINSE-----IwD~RT------- 1292 (1516)
T KOG1832|consen 1234 NLAHFSPCDT-LIL---NDGV--LWDVRI-PEAIHRFDQFTDYGG-GGFHPSG-NEVIINSE-----IWDMRT------- 1292 (1516)
T ss_pred cccccCCCcc-eEe---eCce--eeeecc-HHHHhhhhhheeccc-ccccCCC-ceEEeech-----hhhhHH-------
Confidence 7889999998 665 5554 799998 467777765543333 3599999 77776664 899998
Q ss_pred CcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018700 292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP 327 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (351)
..+++....-.. ..+.|+..|.
T Consensus 1293 ------------F~lLh~VP~Ldq--c~VtFNstG~ 1314 (1516)
T KOG1832|consen 1293 ------------FKLLHSVPSLDQ--CAVTFNSTGD 1314 (1516)
T ss_pred ------------HHHHhcCccccc--eEEEeccCcc
Confidence 666665544322 4566666665
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1e-10 Score=99.48 Aligned_cols=166 Identities=14% Similarity=0.223 Sum_probs=118.3
Q ss_pred eeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc--ccccccCcccceeeeEECCCCCcEEEeecC
Q 018700 112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPHDVNAVAATCE 189 (351)
Q Consensus 112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 189 (351)
.+..+.+|...|..++--.+.+. +++++.|++|++|.++........ -.-....|+.+|.++.|..+.+++++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 34567899999988865555443 788899999999999854322221 11234568889999999887766654 57
Q ss_pred CeEEEEEcccCCcCceeecc--e-----eEEEEcCCCCCcEEEEe-cCCCeEEEEecccCCcceeEee-----CCCCcee
Q 018700 190 SSVQFWDLRSMGKTNSIEHA--H-----VRNVDYDTKKKHLLVTA-ADESGIHLWDLRMLKAPIQELP-----GHTHWTW 256 (351)
Q Consensus 190 ~~i~iwd~~~~~~~~~~~~~--~-----v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~ 256 (351)
|.|++||.--+..+..+... + |.|+.- -+.. +++.| +...+|+++|.|. ..-..+++ +....+.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~-iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRH-ILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEeccc-Ccch-heeeeccchhhheeeeccc-ccceeeEEeccCCCCchhee
Confidence 89999998888776644422 1 444422 1333 45444 6788999999997 44444443 3445688
Q ss_pred EEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 257 AVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+++..+.| +.++.+-.+|+|.+.|.++
T Consensus 881 ~iaVa~~G-N~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 881 AIAVADKG-NKLAAALSNGCIAILDARN 907 (1034)
T ss_pred EEEeccCc-chhhHHhcCCcEEEEecCC
Confidence 99999999 9999999999999999998
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=2.5e-07 Score=77.89 Aligned_cols=238 Identities=8% Similarity=-0.005 Sum_probs=144.1
Q ss_pred CcceEEEeeeee-CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC---------CcceEEEE
Q 018700 27 DHTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG---------ESYGAAIW 96 (351)
Q Consensus 27 ~~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~---------~d~~i~vw 96 (351)
+.+++++..... .-.+.+.+++.... ++. ..+..-. .-..+ ++|+++.|+++. + .+..|.+|
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~--~v~-g~i~~G~-~P~~~-~spDg~~lyva~---~~~~R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAG--RVL-GMTDGGF-LPNPV-VASDGSFFAHAS---TVYSRIARGKRTDYVEVI 82 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCC--EEE-EEEEccC-CCcee-ECCCCCEEEEEe---ccccccccCCCCCEEEEE
Confidence 445566543321 11278888887763 222 2222111 12234 999999998874 5 67899999
Q ss_pred EcccccCCCCCCcceeeeeeecccc-------ceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCccccccc-----
Q 018700 97 QIPELYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQ----- 163 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~----- 163 (351)
|.. +++.+..+..... ....++++|+|+.++++- .-+..|.+.|+.+.+....+....
T Consensus 83 D~~---------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 83 DPQ---------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF 153 (352)
T ss_pred ECc---------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 998 6777777654222 234688999999755555 338999999998754322111100
Q ss_pred -----------ccCc-c---------cceeee--------------EECC-CCCcEEEeecCCeEEEEEcccCC-----c
Q 018700 164 -----------SSGM-L---------HYLSGG--------------AWDP-HDVNAVAATCESSVQFWDLRSMG-----K 202 (351)
Q Consensus 164 -----------~~~~-~---------~~v~~~--------------~~~~-~~~~l~~~~~d~~i~iwd~~~~~-----~ 202 (351)
..+- . ...... .|.+ +++++++... |.|.+.|+.... .
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence 0000 0 001110 1233 6666666555 999999964432 2
Q ss_pred Cceeec---------ceeEEEEcCCCCCcEEEEec---------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018700 203 TNSIEH---------AHVRNVDYDTKKKHLLVTAA---------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY 264 (351)
Q Consensus 203 ~~~~~~---------~~v~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (351)
...+.. +.+.-++++|+++.+++... ..+.|.++|..+ .+.+..+.. ...+..++++|++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dg 310 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDA 310 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCC
Confidence 221111 01455999999985555332 225899999987 656666663 5688999999999
Q ss_pred CCeEEEee-CCCeEEEEEcCC
Q 018700 265 DGFILSAG-TDSTVNLWLVST 284 (351)
Q Consensus 265 ~~~l~s~~-~dg~i~iwd~~~ 284 (351)
..+|++.. .++.|.++|..+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcC
Confidence 42666554 688899999998
No 283
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2e-08 Score=85.75 Aligned_cols=238 Identities=15% Similarity=0.251 Sum_probs=142.0
Q ss_pred eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--------
Q 018700 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-------- 140 (351)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------- 140 (351)
+-+.|||.|.+|++. ...-|.+|--+ ....++.+ .|. .|.-+.|||+.++ +++=+
T Consensus 214 tyv~wSP~GTYL~t~-----Hk~GI~lWGG~---------~f~r~~RF-~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTF-----HKQGIALWGGE---------SFDRIQRF-YHP-GVQFIDFSPNEKY-LVTYSPEPIIVEE 276 (698)
T ss_pred eeEEecCCceEEEEE-----eccceeeecCc---------cHHHHHhc-cCC-CceeeecCCccce-EEEecCCccccCc
Confidence 468899999999886 34468899755 56666666 455 5788999999996 33322
Q ss_pred ---cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC--ceeecceeEEEE
Q 018700 141 ---DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAHVRNVD 215 (351)
Q Consensus 141 ---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~v~~~~ 215 (351)
....++|||+.++.......... +....-.-+.|+.|+++++.-.. ..|.||+..+-.++ ..+....|....
T Consensus 277 ~d~e~~~l~IWDI~tG~lkrsF~~~~--~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGLLKRSFPVIK--SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred ccCCCceEEEEEccccchhcceeccC--CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence 12579999999876554443321 11112334589999998887655 56888876543221 111111166666
Q ss_pred cCCCCCcEEEEecCC-----C----------------------------------------------------eEEEEec
Q 018700 216 YDTKKKHLLVTAADE-----S----------------------------------------------------GIHLWDL 238 (351)
Q Consensus 216 ~~~~~~~~l~~~~~d-----g----------------------------------------------------~i~i~d~ 238 (351)
|+|.+. +||-=... . .+.|+.+
T Consensus 354 wsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 354 WSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred cCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 666654 44322110 0 1223333
Q ss_pred ccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce
Q 018700 239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS 316 (351)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (351)
+...-++..+. -...|...+|.|.|.++.+..+. ..++.+|.++.... ...++..+.. ..
T Consensus 433 reKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~---------------~~~lVk~~dk--~~ 494 (698)
T KOG2314|consen 433 REKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK---------------KPSLVKELDK--KF 494 (698)
T ss_pred eccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC---------------chhhhhhhcc--cc
Confidence 32122222222 23567788899999444443333 34788888874111 1455666644 34
Q ss_pred EEEEEeCCCCCceEEEe--eeCCeEEEeecC
Q 018700 317 VYGLAWSSREPWIFASL--SYDGRVVVESVK 345 (351)
Q Consensus 317 v~~~~~~~~~~~~l~s~--~~dg~v~vw~~~ 345 (351)
.+.+.|+|.|+++++.+ |..|.+.++|+.
T Consensus 495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred cceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 68899999999544333 347889999876
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=5.1e-08 Score=82.47 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=129.1
Q ss_pred cceeeeeeCCCCCc--eEEE-EeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--
Q 018700 66 NEIWDLSSCPFDQR--IFST-VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-- 140 (351)
Q Consensus 66 ~~v~~i~~~~~~~~--l~~~-~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-- 140 (351)
..|....|+|.+.. |+.- -...+.+..+++|.+. ....+.+-.-....=..+.|.+.|.++++..-
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp---------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP---------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc---------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 57778889986432 2221 1225677889999987 23333332223333456889999997655431
Q ss_pred --------cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeEEEEEcccCCcCceeecce
Q 018700 141 --------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIEHAH 210 (351)
Q Consensus 141 --------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~ 210 (351)
....++|+++......... +..++|.+++|.|.++.+++.+ .+-.+.++|++.. ....+..+.
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~ 317 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK 317 (561)
T ss_pred eecccceeccceEEEEeecccccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc
Confidence 1256788888732222111 2234899999999998877654 6788999999965 444444333
Q ss_pred eEEEEcCCCCCcEEEEec--CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee------CCCeEEEEEc
Q 018700 211 VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG------TDSTVNLWLV 282 (351)
Q Consensus 211 v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~ 282 (351)
-+.+.|+|.++++|+.|- ..|.+-+||.......+..+.+. ...-+.|+|++ .++.+.. .|..|+|||+
T Consensus 318 rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 318 RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEEecCCCcccccCcceEEEEe
Confidence 677889999995555333 34789999987533333355432 34556799999 7776654 3889999999
Q ss_pred CC
Q 018700 283 ST 284 (351)
Q Consensus 283 ~~ 284 (351)
..
T Consensus 395 ~g 396 (561)
T COG5354 395 YG 396 (561)
T ss_pred cC
Confidence 75
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=8.4e-07 Score=84.83 Aligned_cols=289 Identities=13% Similarity=0.116 Sum_probs=164.7
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccc----c-------cCC----
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE----L-------YGQ---- 104 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~----~-------~~~---- 104 (351)
..|.|.++..+++.........-.-+..|.+++||||++.|+.++ .++++.+.+-.- + .+.
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~V 170 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT----GEGNLLLMTRDFDPISEVPLDSDDFGESKHV 170 (928)
T ss_pred CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe----CCCEEEEEeccceEEEEeecCccccCCCcee
Confidence 456777775554333333333445578999999999999998873 455655543221 0 000
Q ss_pred ------C----CCCccee--------------eeeeeccccceeEEEecCCCCCcEEEEe---cC---CcEEEEEcCCCC
Q 018700 105 ------L----NSPQLER--------------IAALDAHVGKINCVLWWSSGRHDKLVSI---DE---ENIFLWSLDCSN 154 (351)
Q Consensus 105 ------~----~~~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~d---~~v~iwd~~~~~ 154 (351)
+ ....++. ...+. +.+.-..++|-.||.+ +++++ .. ..++||+-+ +
T Consensus 171 sVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y-FAVss~~~~~~~~R~iRVy~Re-G- 246 (928)
T PF04762_consen 171 SVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY-FAVSSVEPETGSRRVIRVYSRE-G- 246 (928)
T ss_pred eeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE-EEEEEEEcCCCceeEEEEECCC-c-
Confidence 0 0000000 01122 3445567899999996 44443 22 578999876 2
Q ss_pred CCcccccccccCcccceeeeEECCCCCcEEEeec---CCeEEEEEcccCCcCceeec----ce--eEEEEcCCCCCcEEE
Q 018700 155 KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEH----AH--VRNVDYDTKKKHLLV 225 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~----~~--v~~~~~~~~~~~~l~ 225 (351)
....... . ...--.+++|.|.|+.|++.-. ...|.+|. ++|.....|.. .. +..++|++++. +|+
T Consensus 247 ~L~stSE-~---v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLA 320 (928)
T PF04762_consen 247 ELQSTSE-P---VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILA 320 (928)
T ss_pred eEEeccc-c---CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC-EEE
Confidence 2222211 1 1113446799999998887653 35566665 33443333332 11 99999999998 788
Q ss_pred EecCCCeEEEEecccCCcce-eEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCC--CCC------CCCccc
Q 018700 226 TAADESGIHLWDLRMLKAPI-QELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN--HDE------LPSESL 295 (351)
Q Consensus 226 ~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~------~~~~~~ 295 (351)
.-..|. |.+|-..+..=.+ +++. .....+..+.|+|..+..|.....+|.+..++..... +.. .....-
T Consensus 321 v~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVI 399 (928)
T PF04762_consen 321 VWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVI 399 (928)
T ss_pred EEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEE
Confidence 776654 9999987633122 2222 1233455699999887778888887777665543211 000 000000
Q ss_pred ccCCcc-------cccccc--eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 296 VESPNQ-------RANSLL--NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 296 ~~~~~~-------~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
++..-+ ....++ ..+. -..+|.+++|++++. .+++-..||.|.+|...
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWD 456 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEec
Confidence 000000 001111 2222 246799999999987 68888899999999854
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.08 E-value=1.4e-09 Score=84.11 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=101.3
Q ss_pred CCCcEEEeecCCeEEEEEcccCCc-Cceeecce--eEEEEcCCCCCcEEEEec-----CCCeEEEEecccCCcceeEeeC
Q 018700 179 HDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH--VRNVDYDTKKKHLLVTAA-----DESGIHLWDLRMLKAPIQELPG 250 (351)
Q Consensus 179 ~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~--v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~ 250 (351)
.++.++++..||.+.+++.+.-.. ...+...+ -.+.+....+. ++.++. .-+..+.|+++..+..+...+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccc
Confidence 356788999999999999876211 11222112 22333334444 333222 2245666776642222222222
Q ss_pred CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceE
Q 018700 251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF 330 (351)
Q Consensus 251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 330 (351)
...|.+++-+|..+.++++|+.||.+-+||.+.. ..+...++.|+.+++.+-|+|..+..|
T Consensus 179 -~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~------------------~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 179 -LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV------------------AMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred -cccchhhhCCcccccEEEEecCCCeEEEEEcccc------------------cchHHHHHHhhhhhhheeccCCCchhe
Confidence 2349999999988789999999999999999981 345667789999999999999877789
Q ss_pred EEeeeCCeEEEeecC
Q 018700 331 ASLSYDGRVVVESVK 345 (351)
Q Consensus 331 ~s~~~dg~v~vw~~~ 345 (351)
+++++||.+-.||..
T Consensus 240 ft~sedGslw~wdas 254 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAS 254 (319)
T ss_pred eEecCCCcEEEEcCC
Confidence 999999999999987
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=7e-10 Score=89.03 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=106.2
Q ss_pred EEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC----CcceeEeeCCCCceeEE
Q 018700 184 VAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML----KAPIQELPGHTHWTWAV 258 (351)
Q Consensus 184 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~~ 258 (351)
++.+.+-.+-+-|++++-. ..+.... |.++.|...++ ++..|+.+|.|..+|+|.. +.+.+.+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 4556677888889988743 3333233 88999988787 8999999999999999974 23555554 89999999
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc---ceeeccccceEEE--EEeCCCCCceEEEe
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL---LNSYSDYEDSVYG--LAWSSREPWIFASL 333 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~--~~~~~~~~~~l~s~ 333 (351)
..-...+.+|++.+.+|.|++||.+. .++ +.++.+|.+.-.- +...+... .++++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~-------------------~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~ 364 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRA-------------------TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSV 364 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehh-------------------hhcccceeeeecccccccccccccccccc-eEEEc
Confidence 87663338999999999999999998 555 8888888543332 23345555 78889
Q ss_pred eeCCeEEEeecC
Q 018700 334 SYDGRVVVESVK 345 (351)
Q Consensus 334 ~~dg~v~vw~~~ 345 (351)
|.|...|||.++
T Consensus 365 GdDcytRiWsl~ 376 (425)
T KOG2695|consen 365 GDDCYTRIWSLD 376 (425)
T ss_pred cCeeEEEEEecc
Confidence 999999999997
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=1.7e-07 Score=74.09 Aligned_cols=199 Identities=10% Similarity=0.153 Sum_probs=119.7
Q ss_pred eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc---cceeEEEecCCCCCcEEEEecCCcEE
Q 018700 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV---GKINCVLWWSSGRHDKLVSIDEENIF 146 (351)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~d~~v~ 146 (351)
.++.+++|+.|++. .|..|.|-...++.. ..+.....++ -.=..++|+||+. +++.+...|+|+
T Consensus 2 ~~~~~~~Gk~lAi~-----qd~~iEiRsa~Ddf~-------si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~ 68 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-----QDQCIEIRSAKDDFS-------SIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIR 68 (282)
T ss_pred ceeecCCCcEEEEE-----eccEEEEEeccCCch-------heeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEE
Confidence 45677888888776 777887777653221 1122222222 2346799999999 344555679999
Q ss_pred EEEcCCCCCCccccccc--ccCcccceeeeEECCCC------CcEEEeecCCeEEEEEcccC-----CcCceeec----c
Q 018700 147 LWSLDCSNKNAQVQSKQ--SSGMLHYLSGGAWDPHD------VNAVAATCESSVQFWDLRSM-----GKTNSIEH----A 209 (351)
Q Consensus 147 iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~----~ 209 (351)
++|+.... ...+.... .......|.++.|.+.. ..|++-...|.++-|-+..+ +....+.. +
T Consensus 69 vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 69 VFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP 147 (282)
T ss_pred EEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence 99998422 11111111 11223467777775432 24677777888877765432 22223321 2
Q ss_pred e-eEEEEcCCCCCcEEEEec-CCC----------eEEEEecccCC----------cc---------e------eEe---e
Q 018700 210 H-VRNVDYDTKKKHLLVTAA-DES----------GIHLWDLRMLK----------AP---------I------QEL---P 249 (351)
Q Consensus 210 ~-v~~~~~~~~~~~~l~~~~-~dg----------~i~i~d~~~~~----------~~---------~------~~~---~ 249 (351)
+ |.++.++|..+ +|++|+ +.. -+..|.+-... .. + ..+ .
T Consensus 148 ~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 148 HGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence 2 99999999998 555554 322 24445432210 00 0 000 1
Q ss_pred CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.....|..|..+|+| .+|++...+|.|.+|++..
T Consensus 227 ~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCc
Confidence 134678999999999 9999999999999999987
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.06 E-value=4e-09 Score=86.40 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=105.1
Q ss_pred ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee----cce-eEEEEcCCCCCcEEE--EecCCCeEEEEecccCC
Q 018700 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----HAH-VRNVDYDTKKKHLLV--TAADESGIHLWDLRMLK 242 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~-v~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~ 242 (351)
....+..++.+++++++..+....+++.+.......+. ... ...+.+..+....++ ..++...+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34445667788888888888887788777554311111 111 344444444442222 223334455555443
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEE
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLA 321 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~ 321 (351)
.+...+-+|-+-++.|+|+||+ ++++++..|..|++-.... .-.+..+ -+|..-|..++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa-------------------~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPA-------------------TFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCc-------------------ccchhhhccccHhheeeee
Confidence 3445566899999999999999 9999999999999977765 3334444 47999999999
Q ss_pred eCCCCCceEEEeeeCCeEEEeecCcc
Q 018700 322 WSSREPWIFASLSYDGRVVVESVKPF 347 (351)
Q Consensus 322 ~~~~~~~~l~s~~~dg~v~vw~~~~~ 347 (351)
.-++. .|+++|.|++|++||+.+.
T Consensus 202 l~~~~--~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 202 LTDNY--LLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred eccCc--eeeecCCCCcEEEEecccC
Confidence 98864 5899999999999999753
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=6.1e-09 Score=85.34 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=98.6
Q ss_pred eEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC---eEEEEEcccC
Q 018700 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES---SVQFWDLRSM 200 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~ 200 (351)
..+..++.++ +++.+..+....++++....+..+..... .....-+++.|..+......+..-| .+.+|....+
T Consensus 66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 3444566666 23333344555566665433322221111 0111345556666666666654444 4445554443
Q ss_pred CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCe
Q 018700 201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDST 276 (351)
Q Consensus 201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~ 276 (351)
.+... .+| +..++|+||++ +++++..|..|++-.... ...+..+- +|+..|..++.-++. .|+++|.|++
T Consensus 143 ~~~~~--lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~t 216 (390)
T KOG3914|consen 143 RCEPI--LGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKT 216 (390)
T ss_pred Ccchh--hhhhhhhheeeecCCCC-EEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCc--eeeecCCCCc
Confidence 33322 355 99999999998 899999999999988875 33445444 799999999998864 6899999999
Q ss_pred EEEEEcCCCC
Q 018700 277 VNLWLVSTSN 286 (351)
Q Consensus 277 i~iwd~~~~~ 286 (351)
|++||+.++.
T Consensus 217 lr~Wd~~sgk 226 (390)
T KOG3914|consen 217 LRLWDITSGK 226 (390)
T ss_pred EEEEecccCC
Confidence 9999999843
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.02 E-value=9.2e-08 Score=74.55 Aligned_cols=189 Identities=6% Similarity=-0.030 Sum_probs=123.9
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE-CCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eE
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VR 212 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~ 212 (351)
+++++..|...+|...+.+......... ...|+-+.- .-..-.+..++.|.++++.++.-+........+. ..
T Consensus 87 la~gG~~g~fd~~~~~tn~~h~~~cd~s----nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDGHLYQCDVS----NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred EEeccccceeeeecccCcccceeeeccc----ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4555778999999998654333322211 111111110 0012236777889999999887655444443333 88
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE--eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 290 (351)
+++++++++ ++++.+....|..|.+......+.. ....+..-.+..|+... ..+|++..||++.|||++..
T Consensus 163 s~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~----- 235 (344)
T KOG4532|consen 163 SLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM----- 235 (344)
T ss_pred eeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc-----
Confidence 999999999 7888888889999998865543333 22344555778899888 99999999999999999972
Q ss_pred CCcccccCCcccccccc----eeeccccceEEEEEeCCCCCc-eEEEeeeCCeEEEeecCccc
Q 018700 291 PSESLVESPNQRANSLL----NSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 291 ~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~~ 348 (351)
+.+. .+-..|.+.++.+.|++.|.. +|.-.-.=+.+.+-|++.+.
T Consensus 236 -------------~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 236 -------------ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred -------------ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 2222 222458889999999986642 23333334677888877643
No 292
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.01 E-value=5.4e-10 Score=96.73 Aligned_cols=208 Identities=14% Similarity=0.215 Sum_probs=138.6
Q ss_pred cceeeeeeCCCCC-ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE----e
Q 018700 66 NEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS----I 140 (351)
Q Consensus 66 ~~v~~i~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~----~ 140 (351)
..+.|++++-+.. -|+++ |..+|.|.+-.+.... ..--....+|...+++++|++-....++++ -
T Consensus 57 qy~kcva~~y~~d~cIlav---G~atG~I~l~s~r~~h-------dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAV---GSATGNISLLSVRHPH-------DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred CCceeehhhcCCchhhhhh---ccccCceEEeecCCcc-------cccceecccccccccccccccccHHHHHhhhhhhc
Confidence 4566776654433 55555 5788999998877321 111233457888999999999766556666 2
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecceeEEEEcCCC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAHVRNVDYDTK 219 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~v~~~~~~~~ 219 (351)
.|..+.|||+.+.-...........+......+++|..+.+.+++|.....+.++|++... ....+....+..+.+.|-
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF 206 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence 3678999999864211111111111123356688999999999999999999999999432 233333222778888885
Q ss_pred CCcEEEEecCCCeEEEEe-cccCCcceeEeeCCCC----ceeEEEecCCCCCeEEEeeCC-CeEEEEEcCC
Q 018700 220 KKHLLVTAADESGIHLWD-LRMLKAPIQELPGHTH----WTWAVCCNPEYDGFILSAGTD-STVNLWLVST 284 (351)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~ 284 (351)
..++++ ...||.|.+|| .++...++..+...+. .+..++|.|....++++...| ++|+++|+..
T Consensus 207 ~~nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCcee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 444555 55599999999 6655556655543333 389999999876778877765 4899999986
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=2e-09 Score=86.45 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=108.2
Q ss_pred EecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-----C
Q 018700 127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-----G 201 (351)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~ 201 (351)
+|+-+-...-++.+.+-.|-+-++.++.... +.. ...|.++.|...++.++.|+.+|.|..+|++.+ .
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~s------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQS------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc-ccc------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence 6664433223344667889999998753322 111 237999999988999999999999999999975 3
Q ss_pred cCceeecce-eEEEEcCC-CCCcEEEEecCCCeEEEEecccCCcc---eeEeeCCCCceeEEE--ecCCCCCeEEEeeCC
Q 018700 202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVC--CNPEYDGFILSAGTD 274 (351)
Q Consensus 202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d 274 (351)
+...+.++. |+++..-. +++ .|++.+.+|+|++||+|. .+. +.++++|-..-.-+- ..+.. ..+++++.|
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD 367 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD 367 (425)
T ss_pred ceEEEEcCcchhhhhhhccccc-eEeeccCcCceeEeeehh-hhcccceeeeeccccccccccccccccc-ceEEEccCe
Confidence 444444444 77777766 555 677788999999999996 445 788888875543333 35555 788899999
Q ss_pred CeEEEEEcCC
Q 018700 275 STVNLWLVST 284 (351)
Q Consensus 275 g~i~iwd~~~ 284 (351)
...|||.++.
T Consensus 368 cytRiWsl~~ 377 (425)
T KOG2695|consen 368 CYTRIWSLDS 377 (425)
T ss_pred eEEEEEeccc
Confidence 9999999998
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=3.4e-08 Score=78.56 Aligned_cols=219 Identities=14% Similarity=0.201 Sum_probs=134.5
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc------------ccceeeeEECCCCC--cEE
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM------------LHYLSGGAWDPHDV--NAV 184 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~--~l~ 184 (351)
....|+++.|...|.+ +.++...|.|.+|.-.....+.--+.....+| ...|..+.|..++. .++
T Consensus 25 ead~ItaVefd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccce-EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 3457899999999884 33334468999998764332211111122222 23578888876543 477
Q ss_pred EeecCCeEEEEEcccCCc-------------------C-----------------------ceeecce---eEEEEcCCC
Q 018700 185 AATCESSVQFWDLRSMGK-------------------T-----------------------NSIEHAH---VRNVDYDTK 219 (351)
Q Consensus 185 ~~~~d~~i~iwd~~~~~~-------------------~-----------------------~~~~~~~---v~~~~~~~~ 219 (351)
..+.|.+|++|.+..... + +.....| ++++.|+.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 888999999998864310 0 0000123 889999988
Q ss_pred CCcEEEEecCCCeEEEEecccCCcceeE--eeCCC-----CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018700 220 KKHLLVTAADESGIHLWDLRMLKAPIQE--LPGHT-----HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (351)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~-----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 292 (351)
.. .++ ...|=.|.+|++......... ++.|. .-|++..|+|..-.++.-.+..|.|++-|++....-....
T Consensus 184 ~e-t~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 184 KE-TLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred hh-eee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 87 455 456778999998865543332 33443 3578999999876777777889999999998521100000
Q ss_pred cccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
...... ..+.-..-+..-...|..+.|+++|+ ++++-.. -+|++||++
T Consensus 262 klfe~~---~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiwDvn 309 (460)
T COG5170 262 KLFELT---IDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIWDVN 309 (460)
T ss_pred hhhhhc---cCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEEecc
Confidence 000000 00111111223345688999999998 6776654 589999986
No 295
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.92 E-value=1.7e-06 Score=74.66 Aligned_cols=259 Identities=12% Similarity=0.141 Sum_probs=135.5
Q ss_pred CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee-eeec--
Q 018700 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-ALDA-- 118 (351)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~-- 118 (351)
+.+.++++.... . ..+......+....|||+++.++.+ .++.|.+++... ....+ +..+
T Consensus 23 ~~y~i~d~~~~~--~--~~l~~~~~~~~~~~~sP~g~~~~~v-----~~~nly~~~~~~---------~~~~~lT~dg~~ 84 (353)
T PF00930_consen 23 GDYYIYDIETGE--I--TPLTPPPPKLQDAKWSPDGKYIAFV-----RDNNLYLRDLAT---------GQETQLTTDGEP 84 (353)
T ss_dssp EEEEEEETTTTE--E--EESS-EETTBSEEEE-SSSTEEEEE-----ETTEEEEESSTT---------SEEEESES--TT
T ss_pred eeEEEEecCCCc--e--EECcCCccccccceeecCCCeeEEE-----ecCceEEEECCC---------CCeEEeccccce
Confidence 456666666532 2 2222226788899999999999887 567888888752 11111 1111
Q ss_pred -----c---------ccceeEEEecCCCCCcEEEEecCCcEEEEEcC---------------------------------
Q 018700 119 -----H---------VGKINCVLWWSSGRHDKLVSIDEENIFLWSLD--------------------------------- 151 (351)
Q Consensus 119 -----h---------~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~--------------------------------- 151 (351)
- -+.-..+-||||++++++..-++..|..+.+.
T Consensus 85 ~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~ 164 (353)
T PF00930_consen 85 GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVD 164 (353)
T ss_dssp TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEE
T ss_pred eEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEE
Confidence 0 01225688999999755554555554444332
Q ss_pred --CCCCCcccccccccCcccceeeeEECCCCCcEEEee--c---CCeEEEEEcccCCcCceeecce------eEEEEcC-
Q 018700 152 --CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--C---ESSVQFWDLRSMGKTNSIEHAH------VRNVDYD- 217 (351)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~---d~~i~iwd~~~~~~~~~~~~~~------v~~~~~~- 217 (351)
++.............-...+..+.|.+++..+++.- . ...+.++|..++.......... .....+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~ 244 (353)
T PF00930_consen 165 LASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLG 244 (353)
T ss_dssp SSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-T
T ss_pred CCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccccc
Confidence 111100000000011123577788988888444432 2 2356677887765543333111 2344443
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeE-EEecCCCCCeEEEeeCCC--eEEEEEcCCCCCCCCCCcc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELPSES 294 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~ 294 (351)
+++..++.....+|.-+||-+...+...+.+....-.|.. +.++++++.+++++..+. .-.+|.+...
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--------- 315 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--------- 315 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT---------
T ss_pred CCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC---------
Confidence 6666566666688866666555434445566555556744 678888756666776633 4455554431
Q ss_pred cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018700 295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (351)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (351)
.+..+..+......-..+.|||++++++.+++.
T Consensus 316 --------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 316 --------SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp --------ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred --------CCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 012233333222211689999999976666654
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=2.3e-06 Score=72.23 Aligned_cols=189 Identities=13% Similarity=0.072 Sum_probs=122.7
Q ss_pred eeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee---ee-ccc-----cceeEEE-ecC-CCCCcEEEEe
Q 018700 72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA---LD-AHV-----GKINCVL-WWS-SGRHDKLVSI 140 (351)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~-~h~-----~~v~~~~-~~~-~~~~~~~~~~ 140 (351)
..+.||++++.. ..|.|.+||-+++ ..+.+.. +. ..+ .+..-+. |++ +|. +++--
T Consensus 273 ~~nsDGkrIvFq-----~~GdIylydP~td-------~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd--~ia~V 338 (668)
T COG4946 273 NANSDGKRIVFQ-----NAGDIYLYDPETD-------SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD--YIALV 338 (668)
T ss_pred ccCCCCcEEEEe-----cCCcEEEeCCCcC-------cceeeecCCccccccccccccCHHHhhhhhccCCCc--EEEEE
Confidence 346788888874 6678999987632 1111100 00 001 1111111 333 344 33332
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC-eEEEEEcccCCcCceeecce-eEEEEcCC
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-SVQFWDLRSMGKTNSIEHAH-VRNVDYDT 218 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~-v~~~~~~~ 218 (351)
..|...|.+...+- ..++ ++...|.-..+..+++.++.|..|| .+-++|.++++.......-. |.++..+|
T Consensus 339 SRGkaFi~~~~~~~-~iqv------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~ 411 (668)
T COG4946 339 SRGKAFIMRPWDGY-SIQV------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP 411 (668)
T ss_pred ecCcEEEECCCCCe-eEEc------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC
Confidence 34778887766321 1111 2233577677777777899999888 99999999886544433222 99999999
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC----eEEEEEcCC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS----TVNLWLVST 284 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~ 284 (351)
+|+ .++++.....|.++|+.+ +.+...-+...+-|+...|+|++ +++|-+--+| .|+++|+..
T Consensus 412 dGK-~~vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 412 DGK-KVVVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CCc-EEEEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCC
Confidence 998 688888889999999997 54333223456779999999999 9999776655 689999986
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.9e-07 Score=81.21 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=160.5
Q ss_pred ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCC----------CCcE
Q 018700 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG----------RHDK 136 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~~~ 136 (351)
.-.++.|+|.| .++. +....|.+-|.. +.+.+..+..|...|+.+.|.|.. ..++
T Consensus 17 N~~A~Dw~~~G-LiAy-----gshslV~VVDs~---------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ll 81 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAY-----GSHSLVSVVDSR---------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLL 81 (1062)
T ss_pred cccccccCccc-eEEE-----ecCceEEEEehh---------hhhhhhccccCccceeEEEeccCCCchhccCcccccee
Confidence 35678899977 4444 345578898987 788999999999999999998742 2345
Q ss_pred EEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC---CC-CcEEEeecCCeEEEEEcccCCcCceeecce-
Q 018700 137 LVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP---HD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH- 210 (351)
Q Consensus 137 ~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~- 210 (351)
+++ ...|.|.+||.........+. .+..++..++|-+ +. ..|++-....++.+|+..+|+.......++
T Consensus 82 iAsaD~~GrIil~d~~~~s~~~~l~-----~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 82 IASADISGRIILVDFVLASVINWLS-----HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred EEeccccCcEEEEEehhhhhhhhhc-----CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 555 447999999998644333332 2345788888855 33 346666788999999999999988888777
Q ss_pred -eEEEEcCCCCCcEEEEecCCCeEEEEecccCC---cceeEee---CCCC----------------c---------eeEE
Q 018700 211 -VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQELP---GHTH----------------W---------TWAV 258 (351)
Q Consensus 211 -v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~---~~~~----------------~---------v~~~ 258 (351)
..|+.+.|-...-+..-+..|.+.+-+.-... .+.+.++ .|.. . ...+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 67799988765445555556666665542111 1222221 2221 0 1225
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCc-eEEEeeeCC
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDG 337 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg 337 (351)
+|+|.- +-++-......+.++|++. ..++....-..+.+.-+.|-|+.+. .|.+.-.||
T Consensus 237 af~p~~-rn~lfi~~prellv~dle~-------------------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG 296 (1062)
T KOG1912|consen 237 AFSPHW-RNILFITFPRELLVFDLEY-------------------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNG 296 (1062)
T ss_pred hcChhh-hceEEEEeccceEEEcchh-------------------hceeEEEEeccCCcceeEeccCCCcceEEEEecCC
Confidence 567776 3333344566799999998 6777777655555666777776542 566777899
Q ss_pred eEEEeecCc
Q 018700 338 RVVVESVKP 346 (351)
Q Consensus 338 ~v~vw~~~~ 346 (351)
.+.+|--+.
T Consensus 297 ~ltirvrk~ 305 (1062)
T KOG1912|consen 297 RLTIRVRKE 305 (1062)
T ss_pred eEEEEEeec
Confidence 999997544
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.1e-06 Score=75.38 Aligned_cols=261 Identities=10% Similarity=0.141 Sum_probs=151.1
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 119 (351)
+...+.+|++...........+......-.-..||.|+++++... ...|.||+.. ...++..-...
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-----~~sisIyEtp---------sf~lld~Kslk 345 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-----GNSISIYETP---------SFMLLDKKSLK 345 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEec-----cceEEEEecC---------ceeeecccccC
Confidence 336677787776432222122111112223458999999988762 2589999977 43333222234
Q ss_pred ccceeEEEecCCCCCcEEEE---ecC---CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----
Q 018700 120 VGKINCVLWWSSGRHDKLVS---IDE---ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----- 188 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~---~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 188 (351)
-..|....|+|.+. ++|- ..+ ..+.+-.+.+...+..... +.-.=..+.|-.+|.+|..-..
T Consensus 346 i~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nl-----fnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNL-----FNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred CccccCcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeeccc-----eeeeccEEEeccCCcEEEEEEEeeccc
Confidence 46788899999977 4432 111 2344555543322211111 1111223567778888775421
Q ss_pred --C---CeEEEEEcccCCc-Cceeecce-eEEEEcCCCCCcEEEEecC--CCeEEEEeccc-CCc--ceeEeeCCCCcee
Q 018700 189 --E---SSVQFWDLRSMGK-TNSIEHAH-VRNVDYDTKKKHLLVTAAD--ESGIHLWDLRM-LKA--PIQELPGHTHWTW 256 (351)
Q Consensus 189 --d---~~i~iwd~~~~~~-~~~~~~~~-v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~-~~~--~~~~~~~~~~~v~ 256 (351)
. ..+.|+.++.... +....... +...+|-|.|..+.+..++ ..++.+|.+++ ..+ .+..+. ....+
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N 496 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFAN 496 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccc
Confidence 1 2455677765543 33333333 8999999999843333332 35799998873 222 233333 35678
Q ss_pred EEEecCCCCCeEEEee---CCCeEEEEEcCCCCCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCceEEE
Q 018700 257 AVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFAS 332 (351)
Q Consensus 257 ~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s 332 (351)
.+.|+|.| ++++.+. ..|.+.++|+.. ..+..+ ...|. ..+.+.|.|.|+ ++++
T Consensus 497 ~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~-------------------a~~k~~~~~eh~-~at~veWDPtGR-YvvT 554 (698)
T KOG2314|consen 497 TVFWSPKG-RFVVVAALVSRRGDLEFYDTDY-------------------ADLKDTASPEHF-AATEVEWDPTGR-YVVT 554 (698)
T ss_pred eEEEcCCC-cEEEEEEecccccceEEEecch-------------------hhhhhccCcccc-ccccceECCCCC-EEEE
Confidence 89999999 7776653 478899999985 222222 22343 367899999999 7777
Q ss_pred eee------CCeEEEeecC
Q 018700 333 LSY------DGRVVVESVK 345 (351)
Q Consensus 333 ~~~------dg~v~vw~~~ 345 (351)
++. |.--++|++.
T Consensus 555 ~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 555 SSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eeehhhhccccceEEEEee
Confidence 764 4445666664
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.6e-07 Score=76.15 Aligned_cols=248 Identities=15% Similarity=0.112 Sum_probs=145.7
Q ss_pred eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018700 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 139 (351)
.+.+|...|.+++|+|..+-|+.. ++.+.+|+|.|++ +...+..+..+ ..+++++|.-+..+.+.++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~---asl~nkiki~dle---------t~~~vssy~a~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGL---ASLGNKIKIMDLE---------TSCVVSSYIAY-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cccccchhhhhhccCccccceeee---eccCceEEEEecc---------cceeeeheecc-CCceeeeeccCCcceeEEe
Confidence 455678899999999998865554 3789999999999 55667777777 7899999999998877777
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC------CCCCcEEEeecCCeEEEEEccc----CCcCceeecc
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD------PHDVNAVAATCESSVQFWDLRS----MGKTNSIEHA 209 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~ 209 (351)
-.+|.|.|||++........+... -...+|..++.- +.+..++....+ +..|.+.. ..++..+...
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~--~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVAN--VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhh--hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence 789999999999654333222221 011244443332 223333333322 34455432 2222333322
Q ss_pred e-eEEEEcCCCCCcEEEEecCCCe------EEE-EecccCCcceeE-eeCC-CCc------eeEEEecCCCCCeEEEeeC
Q 018700 210 H-VRNVDYDTKKKHLLVTAADESG------IHL-WDLRMLKAPIQE-LPGH-THW------TWAVCCNPEYDGFILSAGT 273 (351)
Q Consensus 210 ~-v~~~~~~~~~~~~l~~~~~dg~------i~i-~d~~~~~~~~~~-~~~~-~~~------v~~~~~~~~~~~~l~s~~~ 273 (351)
. ..++++++..+.++++.-.+.+ |-. .|.+. +.++.. -.++ ... -..+.-.++...++..++.
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 2 6677777766666766554321 111 11111 222211 1112 111 0112123444234445666
Q ss_pred CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC-CCCceEEEeeeCCeEEEeecCc
Q 018700 274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
-+.+.+||..+ .+.+.++.- ..+|.++.... ++..+|+.-. |..++||+.+.
T Consensus 410 tn~lil~D~~s-------------------~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 410 TNELILQDPHS-------------------FEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred cceeEEeccch-------------------hheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 77999999998 788888754 46788776543 4443565554 66889887653
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.88 E-value=1.1e-06 Score=74.76 Aligned_cols=203 Identities=9% Similarity=0.038 Sum_probs=130.1
Q ss_pred CcceeeeeeCCCCCceEEEEeecC-----------CcceEEEEEcccccCCCCCCcceeeeeeeccccc--ee-EEEecC
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTG-----------ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK--IN-CVLWWS 130 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~-----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~ 130 (351)
...|..+.|+|.+++|.+=...+- .+..+.+||+. .+..+..+.....+ .+ -+.|+.
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~---------sg~iv~sf~~~~q~~~~Wp~~k~s~ 141 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA---------SGMIVFSFNGISQPYLGWPVLKFSI 141 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc---------CceeEeeccccCCcccccceeeeee
Confidence 457889999999988876421111 22358999998 67777777766655 55 678888
Q ss_pred CCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc--EEEe-----ecCCeEEEEEcccCCcC
Q 018700 131 SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN--AVAA-----TCESSVQFWDLRSMGKT 203 (351)
Q Consensus 131 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~-----~~d~~i~iwd~~~~~~~ 203 (351)
+..+ ++=-....++|+++. +.........-. ...+....|+|.++. |+.- +.++.+++|.+..+..+
T Consensus 142 ~D~y--~ARvv~~sl~i~e~t-~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 142 DDKY--VARVVGSSLYIHEIT-DNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred cchh--hhhhccCeEEEEecC-CccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 8874 332234679999973 222211111111 236888899997433 3332 35789999999865544
Q ss_pred ceeecce--eEEEEcCCCCCcEEEEec----------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE-
Q 018700 204 NSIEHAH--VRNVDYDTKKKHLLVTAA----------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS- 270 (351)
Q Consensus 204 ~~~~~~~--v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s- 270 (351)
.+-..-. -..+.|++.|.++++-.- ....+++++++. +.+.......++|...+|.|.+.++.+.
T Consensus 216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEe
Confidence 4332222 457889999986554322 124688898874 2333333567899999999998444333
Q ss_pred eeCCCeEEEEEcCC
Q 018700 271 AGTDSTVNLWLVST 284 (351)
Q Consensus 271 ~~~dg~i~iwd~~~ 284 (351)
|-.+-.+.++|++.
T Consensus 294 g~~pa~~s~~~lr~ 307 (561)
T COG5354 294 GYMPASVSVFDLRG 307 (561)
T ss_pred cccccceeeccccc
Confidence 34677899999986
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.88 E-value=4.6e-09 Score=58.63 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=35.6
Q ss_pred ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
+++.++.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 56788999999999999999988 899999999999997
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.2e-08 Score=56.90 Aligned_cols=38 Identities=21% Similarity=0.492 Sum_probs=35.8
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 281 (351)
+++.++.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4678899999999999999998 9999999999999997
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.82 E-value=3.9e-06 Score=73.33 Aligned_cols=221 Identities=11% Similarity=0.037 Sum_probs=126.0
Q ss_pred CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccce-----eEEEecCCCCCcEEEEecCCcEEEEEcC
Q 018700 77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSIDEENIFLWSLD 151 (351)
Q Consensus 77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 151 (351)
+..+++. ..++.+..||.. +++.+-.+......+ .+.... ++ .++++..++.+..+|+.
T Consensus 145 ~~~v~v~----~~~g~l~a~d~~---------tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 145 NGLVVVR----TNDGRLTALDAA---------TGERLWTYSRVTPALTLRGSASPVIA-DG--GVLVGFAGGKLVALDLQ 208 (377)
T ss_pred CCEEEEE----CCCCeEEEEEcC---------CCceeeEEccCCCceeecCCCCCEEE-CC--EEEEECCCCEEEEEEcc
Confidence 3455553 578889999987 344433332211111 011111 22 25666678899999988
Q ss_pred CCCCCcccccccccCcc--cceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEe
Q 018700 152 CSNKNAQVQSKQSSGML--HYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTA 227 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 227 (351)
++............+.. ..+..+.-+| .+..+++++.+|.++.||+++++............... .+. .++.+
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~--~~~-~vyv~ 285 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV--DDN-RLYVT 285 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE--eCC-EEEEE
Confidence 76544332111100000 0000000011 24578888889999999999988766554222222222 344 56778
Q ss_pred cCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc
Q 018700 228 ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL 306 (351)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (351)
+.+|.+..+|..+ ++.+....... ........ .+ ..+++++.+|.|.++|..+ ++.
T Consensus 286 ~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~t-------------------G~~ 342 (377)
T TIGR03300 286 DADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSRED-------------------GSF 342 (377)
T ss_pred CCCCeEEEEECCC-CcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCC-------------------CCE
Confidence 8999999999986 54444432111 11222222 34 6888899999999999988 888
Q ss_pred ceeeccccceEEE-EEeCCCCCceEEEeeeCCeEEEe
Q 018700 307 LNSYSDYEDSVYG-LAWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 307 ~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~vw 342 (351)
+..++.+...+.. ..+. ++ .|+.++.||.|+.+
T Consensus 343 ~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 343 VARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence 8777665543322 2222 33 47788889998876
No 304
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.80 E-value=3.3e-09 Score=92.01 Aligned_cols=202 Identities=18% Similarity=0.283 Sum_probs=133.7
Q ss_pred ccceeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEEEee----cCCeEE
Q 018700 120 VGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAAT----CESSVQ 193 (351)
Q Consensus 120 ~~~v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~----~d~~i~ 193 (351)
...+.|++++-+.. .++.+|..+|.|.+-.+......... ..+++....++++|++-+. .|++|- .|..+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E---~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE---VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce---ecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 34566777766554 44556677899999888754333111 1234566899999998544 455542 467899
Q ss_pred EEEcccC--CcC--ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC
Q 018700 194 FWDLRSM--GKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG 266 (351)
Q Consensus 194 iwd~~~~--~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (351)
|||+.++ .+. ..+..+. ..+++|..+.+ ++.+|.....+.++|+|........ ..+..+..+..+|-...
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPN 209 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCC
Confidence 9999876 221 1222111 77899998887 8888999999999999952222222 23456777888885447
Q ss_pred eEEEeeCCCeEEEEEc-CCCCCCCCCCcccccCCcccccccceeecccc----ceEEEEEeCCCCCceEEEeee-CCeEE
Q 018700 267 FILSAGTDSTVNLWLV-STSNHDELPSESLVESPNQRANSLLNSYSDYE----DSVYGLAWSSREPWIFASLSY-DGRVV 340 (351)
Q Consensus 267 ~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~-dg~v~ 340 (351)
++++-. ||.|.+||. +. ...++..+...+ ..+..++|+|....++++... .++|+
T Consensus 210 Y~cs~~-dg~iAiwD~~rn------------------ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRN------------------IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred ceeccc-cCceeeccchhh------------------hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 888766 999999994 33 123333332222 248899999987777888774 57899
Q ss_pred EeecCc
Q 018700 341 VESVKP 346 (351)
Q Consensus 341 vw~~~~ 346 (351)
++++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 998864
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=4.7e-06 Score=68.16 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=117.9
Q ss_pred EEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc
Q 018700 125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 204 (351)
++.|.+....++++....+.|..|+..+... ...... ...++++...+..++++... .+.++|+.+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~------~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLP------GPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESS------SEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecC------CCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEE
Confidence 5678885554444545688999999985322 222211 36677777333556665554 45556988875433
Q ss_pred eeec---c-e---eEEEEcCCCCCcEEEEecCC--------CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018700 205 SIEH---A-H---VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (351)
Q Consensus 205 ~~~~---~-~---v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 269 (351)
.... . . ++.+++.|+|. +.++.... |.|..++.. .+ +..+...-...+.|+|+|+++.+++
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheee
Confidence 3322 1 2 99999999998 66655433 456666665 32 3333333456789999999943455
Q ss_pred EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 270 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+-+..+.|..+++....... ...+.+..+.........+++..+|. ++++....+.|.+++.+.
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGEL------------SNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp EETTTTEEEEEEEETTTCCE------------EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS
T ss_pred cccccceeEEEeccccccce------------eeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc
Confidence 77788899999986411000 00111222222223478899999998 777777788999988653
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-07 Score=77.87 Aligned_cols=219 Identities=13% Similarity=0.010 Sum_probs=144.7
Q ss_pred ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CCeEEEEE
Q 018700 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWD 196 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd 196 (351)
-|.+.|+.+.-... + +++.++.||.++.|.-... ....+..+...|...+.+++.+-++..+.+.+. |..++++|
T Consensus 7 mhrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeeehh-h-eEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 46777776644333 2 3677799999999986531 112222333456678888898988888888776 99999999
Q ss_pred cccCCcCceeecce---eEEEEcCCCCC--cEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEE
Q 018700 197 LRSMGKTNSIEHAH---VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILS 270 (351)
Q Consensus 197 ~~~~~~~~~~~~~~---v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s 270 (351)
+++-..+.-+.... ..+...+|... .+.++.-.++.+.++|-+... +....-.-|..+|..+.+.+-+ ..+++
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vS 161 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVS 161 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceee
Confidence 99876655554333 33333344322 134444578999999987544 3334445699999999999999 88999
Q ss_pred eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 271 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
....|.|.-|..... -+.+. ....+......-+..+........++.|+|++. .+++-+.|..|+++.+..
T Consensus 162 iD~~gmVEyWs~e~~--~qfPr--~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGP--FQFPR--TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKT 232 (558)
T ss_pred ccccceeEeecCCCc--ccCcc--ccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEecc
Confidence 999999999988730 00000 000011011122233333445678999999999 799999999999998764
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=2.4e-05 Score=63.91 Aligned_cols=225 Identities=14% Similarity=0.096 Sum_probs=135.0
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcc-eEEEEEcccccCCCCCCcceeeeeeecccccee--EEEecCCCCCcEEEE-e-
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKIN--CVLWWSSGRHDKLVS-I- 140 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~~-~- 140 (351)
.....++.+|.....++.+ -..| ...+||.. +.+....+....+.-. .-.|+++|+. ++++ .
T Consensus 5 ~RgH~~a~~p~~~~avafa---RRPG~~~~v~D~~---------~g~~~~~~~a~~gRHFyGHg~fs~dG~~-LytTEnd 71 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFA---RRPGTFALVFDCR---------TGQLLQRLWAPPGRHFYGHGVFSPDGRL-LYTTEND 71 (305)
T ss_pred ccccceeeCCCCCeEEEEE---eCCCcEEEEEEcC---------CCceeeEEcCCCCCEEecCEEEcCCCCE-EEEeccc
Confidence 3456778888665555542 3444 46788887 4444444433322221 2579999995 5555 1
Q ss_pred ---cCCcEEEEEcCC-CCCCcccccccccCcccceeeeEECCCCCcEEEeec------------------CCeEEEEEcc
Q 018700 141 ---DEENIFLWSLDC-SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------------------ESSVQFWDLR 198 (351)
Q Consensus 141 ---~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~ 198 (351)
..|.|-|||... ..+..+... +--....+.+.||++.|+++.. +-.+.+.|..
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s-----~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPS-----HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecC-----CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 258899999982 222222211 1123456778999988877631 2345567778
Q ss_pred cCCcCceeec--c-e---eEEEEcCCCCCcEEEEecCCC-------eEEEEecccCCcceeEee-------CCCCceeEE
Q 018700 199 SMGKTNSIEH--A-H---VRNVDYDTKKKHLLVTAADES-------GIHLWDLRMLKAPIQELP-------GHTHWTWAV 258 (351)
Q Consensus 199 ~~~~~~~~~~--~-~---v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~-------~~~~~v~~~ 258 (351)
+++.+..... . | +..+++.++|. .++.....| -|-+++... .+..+. .-...+-+|
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEE
Confidence 8887666442 2 2 99999999997 444333322 244444332 222222 234678999
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (351)
++++++..+.+|+=.-+.+.+||..+ +..+....-. .+..++-.+++ ++++.+.
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~t-------------------g~~~~~~~l~--D~cGva~~~~~--f~~ssG~ 276 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAAT-------------------GRLLGSVPLP--DACGVAPTDDG--FLVSSGQ 276 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCC-------------------CCEeeccccC--ceeeeeecCCc--eEEeCCC
Confidence 99999933445666688999999998 7776655432 35667766654 4555543
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.7e-08 Score=90.97 Aligned_cols=198 Identities=13% Similarity=0.223 Sum_probs=139.6
Q ss_pred cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec
Q 018700 109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188 (351)
Q Consensus 109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 188 (351)
.++..++++.|+..-+|++|+-..++ ++.++..|.|+++++.++.....+ ..|...++.+.=+.+|..+++.+.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeecc
Confidence 34566778889999999999999886 777888899999999986544433 357778999988889988877653
Q ss_pred C--CeEEEEEccc-CCcCceeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-e---CCCCceeEEEec
Q 018700 189 E--SSVQFWDLRS-MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-P---GHTHWTWAVCCN 261 (351)
Q Consensus 189 d--~~i~iwd~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~v~~~~~~ 261 (351)
- --..+|++.. +....++.. -.++.|+..-. .-+.|+......+||+.+ ..++.++ . +....-+.+.|+
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~e--d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT-~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE--DKAVKFSNSLQ-FRALGTEADDALLYDVQT-CSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred ccCchHHHhccccccCccccccc--cceeehhhhHH-HHHhcccccceEEEeccc-CcHHHHhcCcchhhhhhccccccC
Confidence 2 3567899864 344444443 45788887765 344466667899999998 5555553 2 122334778899
Q ss_pred CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018700 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341 (351)
Q Consensus 262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v 341 (351)
|+. .+++- ||. +||++. .+.++.|...+..+ .-.|+|+|. -++.-+ .|
T Consensus 1240 P~D-~LIln---dGv--LWDvR~-------------------~~aIh~FD~ft~~~-~G~FHP~g~-eVIINS-----EI 1287 (1516)
T KOG1832|consen 1240 PCD-TLILN---DGV--LWDVRI-------------------PEAIHRFDQFTDYG-GGGFHPSGN-EVIINS-----EI 1287 (1516)
T ss_pred CCc-ceEee---Cce--eeeecc-------------------HHHHhhhhhheecc-cccccCCCc-eEEeec-----hh
Confidence 998 66653 553 799998 67777776555333 335999998 565555 38
Q ss_pred eecCccc
Q 018700 342 ESVKPFL 348 (351)
Q Consensus 342 w~~~~~~ 348 (351)
||+++|.
T Consensus 1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred hhhHHHH
Confidence 8888753
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1e-05 Score=72.50 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=116.7
Q ss_pred CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC---CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee
Q 018700 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP---FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA 115 (351)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 115 (351)
+..|.|.++++--.. ....+..|.+.|.+++|-| +.+.++++. ....++.+|+.. +++..-.
T Consensus 86 D~~GrIil~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI---h~ss~lvLwntd---------tG~k~Wk 150 (1062)
T KOG1912|consen 86 DISGRIILVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAI---HGSSTLVLWNTD---------TGEKFWK 150 (1062)
T ss_pred cccCcEEEEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEe---cCCcEEEEEEcc---------CCceeec
Confidence 456888888877543 2234556778999999966 343455443 455689999987 5666555
Q ss_pred eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC------ccccccc-c-----------cCccc--------
Q 018700 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN------AQVQSKQ-S-----------SGMLH-------- 169 (351)
Q Consensus 116 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~------~~~~~~~-~-----------~~~~~-------- 169 (351)
.........|+.+.|-....+...+..|.|.+-+.-...+. .++...+ . ..++.
T Consensus 151 ~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi 230 (1062)
T KOG1912|consen 151 YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI 230 (1062)
T ss_pred cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence 55555667778999866554555555677776654321111 0010000 0 00000
Q ss_pred -ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCC-cEEEEecCCCeEEEEeccc
Q 018700 170 -YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKK-HLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 170 -~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~ 240 (351)
....++|+|.-+.++.......+.++|++-..++..+.... +.-+.+-|+++ ..+++...||.+.+|-.+.
T Consensus 231 ty~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 231 TYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 01234778887777777788899999999877776665444 55666666653 3677788899888886543
No 310
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.67 E-value=2.9e-06 Score=74.00 Aligned_cols=165 Identities=10% Similarity=0.137 Sum_probs=105.0
Q ss_pred eeeeeeccccceeEEEecCCCCCcEEEEe-c-C-CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-
Q 018700 112 RIAALDAHVGKINCVLWWSSGRHDKLVSI-D-E-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT- 187 (351)
Q Consensus 112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~-d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 187 (351)
....+..-...+..-+|+|++..+....- . . ..+.+++++++......... + .-..-+|+|||+.|+...
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g---~~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---G---NNGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---C---ccCCccCCCCCCEEEEEEC
Confidence 33444445566777899999997655652 2 2 35999999976554443322 2 444568999999988765
Q ss_pred cCC--eEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018700 188 CES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE 263 (351)
Q Consensus 188 ~d~--~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (351)
.|| .|+++|+..+.... +.... -..-.|+|+|++++++.+..|.-.||-+...+.....+......-....|+|+
T Consensus 258 rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred CCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCC
Confidence 444 56777888766333 33233 44778999999877777777765555554434444555544443347889999
Q ss_pred CCCeEEEeeC-CCe--EEEEEcCC
Q 018700 264 YDGFILSAGT-DST--VNLWLVST 284 (351)
Q Consensus 264 ~~~~l~s~~~-dg~--i~iwd~~~ 284 (351)
| .+|+..+. +|. |.+.|+..
T Consensus 337 G-~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 337 G-DKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred C-CEEEEEeccCCceeeEEeccCC
Confidence 9 66655443 444 56666655
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.66 E-value=2.5e-05 Score=73.52 Aligned_cols=203 Identities=10% Similarity=0.112 Sum_probs=123.0
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~ 144 (351)
.+.|.++.|..+...++.+ ...|.|.+-|.++ ........-...|.+++|+||+..+.++++ ..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~----~~~G~iilvd~et----------~~~eivg~vd~GI~aaswS~Dee~l~liT~-~~t 132 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVI----TALGDIILVDPET----------LELEIVGNVDNGISAASWSPDEELLALITG-RQT 132 (1265)
T ss_pred CcceEEEEEecccceEEEE----ecCCcEEEEcccc----------cceeeeeeccCceEEEeecCCCcEEEEEeC-CcE
Confidence 3689999999888877775 4677777777662 223333345678999999999995444443 455
Q ss_pred EEEEEcC----CCCCC-------ccccccc-------cc---C------------------cccceeeeEECCCCCcEEE
Q 018700 145 IFLWSLD----CSNKN-------AQVQSKQ-------SS---G------------------MLHYLSGGAWDPHDVNAVA 185 (351)
Q Consensus 145 v~iwd~~----~~~~~-------~~~~~~~-------~~---~------------------~~~~v~~~~~~~~~~~l~~ 185 (351)
+.+-+-. ..... .+..... .. + ..+.=+.+.|--||+++++
T Consensus 133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV 212 (1265)
T KOG1920|consen 133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV 212 (1265)
T ss_pred EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence 5543321 00000 0000000 00 0 0011234899999999887
Q ss_pred ee----cC-CeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCc--ceeEeeCCCC
Q 018700 186 AT----CE-SSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA--PIQELPGHTH 253 (351)
Q Consensus 186 ~~----~d-~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~ 253 (351)
.. .+ ..|++||.+ +..-..-.... -.+++|-|.|. ++++-. +|+.|.+|..+-... ....+.....
T Consensus 213 s~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred EEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 43 24 799999987 43322222111 67899999998 666543 456799988652211 1111222334
Q ss_pred ceeEEEecCCCCCeEEE---eeCCCeEEEEEcCCC
Q 018700 254 WTWAVCCNPEYDGFILS---AGTDSTVNLWLVSTS 285 (351)
Q Consensus 254 ~v~~~~~~~~~~~~l~s---~~~dg~i~iwd~~~~ 285 (351)
.+..++|+.++ ..|+. ......|++|-+.+.
T Consensus 291 ~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 291 EVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred chheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence 58999999999 88887 455556999988763
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.65 E-value=2.3e-06 Score=74.44 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=80.9
Q ss_pred ccceeEEEecCCCCCcEEEE----ecCCcE----EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018700 120 VGKINCVLWWSSGRHDKLVS----IDEENI----FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS 191 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~----~~d~~v----~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 191 (351)
+....++.|+-...+.+.+- +.+|.+ .+|++...+ ...+ ..........+.+.+++|+...++.|+.||.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrv-svtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRV-SVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEE-EEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 34456788887665544443 234433 467766432 2221 1112234458999999999999999999999
Q ss_pred EEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018700 192 VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 192 i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (351)
|.+||...+..... +..- +..++|+|+|. ++++|++.|.+.+||+.-
T Consensus 283 iiLyD~~~~~t~~~-ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 283 IILYDTTRGVTLLA-KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEEcCCCeeeee-eecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence 99999876633222 2122 88999999998 899999999999999864
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.1e-05 Score=73.18 Aligned_cols=196 Identities=11% Similarity=0.074 Sum_probs=123.2
Q ss_pred eeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC-----cEE
Q 018700 72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE-----NIF 146 (351)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~-----~v~ 146 (351)
+|++.+..++. |+.+|.|.+.+-. .+.++.++.+...+...-|.-++..++++-+.|+ .++
T Consensus 30 c~~s~~~~vvi----gt~~G~V~~Ln~s----------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 30 CCSSSTGSVVI----GTADGRVVILNSS----------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred EEcCCCceEEE----eeccccEEEeccc----------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 35676767766 4688887777643 4566778888777433445555544344445543 589
Q ss_pred EEEcCCCCCCc--------ccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc---c-CCcCceeecce--eE
Q 018700 147 LWSLDCSNKNA--------QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR---S-MGKTNSIEHAH--VR 212 (351)
Q Consensus 147 iwd~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~-~~~~~~~~~~~--v~ 212 (351)
||+++..+... .+.....+....++.+++.+.+-+.+++|-.+|.|..+.-. . +........+. |+
T Consensus 96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 99998543222 11111122234578889999888889999999999887522 1 11111111122 99
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+++..++...+.++ ....|.+|.+.........+..|..+++|..|++.. ..+++++. ..+.+||...
T Consensus 176 gL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred eeEEecCCceeEEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEecC-ceEEEEcCCC
Confidence 999998888423323 334789999884231244477888899999999876 43444443 3589999886
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=1.3e-05 Score=65.13 Aligned_cols=212 Identities=13% Similarity=0.041 Sum_probs=121.6
Q ss_pred cceEEEEEcccccCCCCCCcceeeeeeecc--ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 90 SYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
++.|..||.. +++.+-....- .....+... +++.. +++++.++.+..||..+++.........
T Consensus 2 ~g~l~~~d~~---------tG~~~W~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~---- 66 (238)
T PF13360_consen 2 DGTLSALDPR---------TGKELWSYDLGPGIGGPVATAV-PDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPG---- 66 (238)
T ss_dssp TSEEEEEETT---------TTEEEEEEECSSSCSSEEETEE-EETTE-EEEEETTSEEEEEETTTSEEEEEEECSS----
T ss_pred CCEEEEEECC---------CCCEEEEEECCCCCCCccceEE-EeCCE-EEEEcCCCEEEEEECCCCCEEEEeeccc----
Confidence 5677777775 45555444321 111111122 23443 6666789999999998776544443311
Q ss_pred ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee-ecc----e-eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018700 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (351)
.+.... ...+..+++++.++.++.+|+++++..... ... . .........+. .++.+..++.|..+|+++
T Consensus 67 --~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~t- 141 (238)
T PF13360_consen 67 --PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKT- 141 (238)
T ss_dssp --CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTT-
T ss_pred --ccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCC-
Confidence 111111 123566777778889999999999988774 311 1 11122222255 577788899999999997
Q ss_pred CcceeEeeCCCCce-----------eEEEecCCCCCeEEEeeCCCe-EEEEEcCCCCCCCCCCcccccCCccccccccee
Q 018700 242 KAPIQELPGHTHWT-----------WAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSESLVESPNQRANSLLNS 309 (351)
Q Consensus 242 ~~~~~~~~~~~~~v-----------~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (351)
++.+.......... ..+.+. ++ .++.++.++. +.+ |..+ ++.+..
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t-------------------g~~~w~ 198 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT-------------------GEKLWS 198 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT-------------------TEEEEE
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC-------------------CCEEEE
Confidence 66776666533221 222233 33 5555666664 555 9988 654433
Q ss_pred eccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018700 310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 310 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
.. ...+..+ ...++. .++.++.++.|..||+.+..
T Consensus 199 ~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 199 KP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTE
T ss_pred ec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCC
Confidence 22 2223332 335555 56666689999999998643
No 315
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.62 E-value=5.5e-05 Score=66.12 Aligned_cols=224 Identities=10% Similarity=-0.013 Sum_probs=123.7
Q ss_pred CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC
Q 018700 76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK 155 (351)
Q Consensus 76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 155 (351)
++..++++ +.++.+..+|.. +++.+-..... ..+.+.-...++. +++...++.++.||.++++.
T Consensus 104 ~~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~-~~~~~~p~v~~~~--v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 104 DGGLVFVG----TEKGEVIALDAE---------DGKELWRAKLS-SEVLSPPLVANGL--VVVRTNDGRLTALDAATGER 167 (377)
T ss_pred cCCEEEEE----cCCCEEEEEECC---------CCcEeeeeccC-ceeecCCEEECCE--EEEECCCCeEEEEEcCCCce
Confidence 35566664 578899999976 44444333221 2222111111233 66666789999999988765
Q ss_pred CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------e---EEEEcCC--CCCcEE
Q 018700 156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V---RNVDYDT--KKKHLL 224 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v---~~~~~~~--~~~~~l 224 (351)
..+................... +..++++..++.+..+|+++++.+....... + ..+.-+| .+. .+
T Consensus 168 ~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~v 244 (377)
T TIGR03300 168 LWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QV 244 (377)
T ss_pred eeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EE
Confidence 4443221100000000111111 2467777888999999999987665433110 0 0111111 233 56
Q ss_pred EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018700 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (351)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
+.++.+|.++.||.++ ++.+..... . ....+. ..+ ..++.++.||.+..+|..+ +
T Consensus 245 y~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~--~~~-~~vyv~~~~G~l~~~d~~t-------------------G 299 (377)
T TIGR03300 245 YAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPA--VDD-NRLYVTDADGVVVALDRRS-------------------G 299 (377)
T ss_pred EEEEcCCEEEEEECCC-CcEEEeecc-C-CccCce--EeC-CEEEEECCCCeEEEEECCC-------------------C
Confidence 6678899999999987 544444431 1 112222 234 5777788899999999987 5
Q ss_pred ccceeecccc-ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 305 SLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 305 ~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+.+....... ....+... .+. .++.++.+|.|+++|..+
T Consensus 300 ~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 300 SELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSRED 339 (377)
T ss_pred cEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCC
Confidence 5444332111 11112122 244 677888899999998764
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=3.2e-05 Score=63.23 Aligned_cols=197 Identities=11% Similarity=0.063 Sum_probs=122.3
Q ss_pred eeEEEecCCCCCcEEEEecC-CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEE
Q 018700 123 INCVLWWSSGRHDKLVSIDE-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWD 196 (351)
Q Consensus 123 v~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd 196 (351)
...++.+|.....++.+-.- ....+||..++.....+.... ..| ..-.-.|++||++|++.-+ .|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-gRH--FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-GRH--FYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-CCE--EecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34577888666545555444 456789998766554433221 111 2224579999999998753 58999999
Q ss_pred cc-cCCcCceeecce--eEEEEcCCCCCcEEEEecC------------------CCeEEEEecccCCcceeE--e--eCC
Q 018700 197 LR-SMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD------------------ESGIHLWDLRMLKAPIQE--L--PGH 251 (351)
Q Consensus 197 ~~-~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~--~--~~~ 251 (351)
.. +-+.+..+.... ...+.+.|+++ .|+++.. +.++...|.++ ++.+.+ + .-|
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDLH 161 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCcccc
Confidence 99 444555555322 78888999997 3444421 12355556555 444544 3 237
Q ss_pred CCceeEEEecCCCCCeEEEeeCCC-------eEEEEEcCCCCCCCCCCcccccCCcccccccceee-------ccccceE
Q 018700 252 THWTWAVCCNPEYDGFILSAGTDS-------TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-------SDYEDSV 317 (351)
Q Consensus 252 ~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v 317 (351)
...|..+++.++| ..++..-..| .|-+++... .+..+ ..-...+
T Consensus 162 ~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~---------------------~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 162 QLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG---------------------ALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred ccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC---------------------cceeccCChHHHHhhCCce
Confidence 7789999999988 5555443333 122332221 11111 1223568
Q ss_pred EEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 318 YGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 318 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
-+|++++++..+.+|+-..+.+.+||..+
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 89999999985556766889999998764
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.59 E-value=6.7e-06 Score=71.80 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=113.7
Q ss_pred eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018700 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (351)
+....+.++..+++.-++.....-.++++++.......... ..+.-...+|+|||+.|+.+. ..|+...||-+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fspDG~~l~f~~---~rdg~~~iy~~ 267 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSPDGSKLAFSS---SRDGSPDIYLM 267 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCCCCCEEEEEE---CCCCCccEEEE
Confidence 33455677777777665544443457777777655443322 334445678999999988874 66676555544
Q ss_pred ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC
Q 018700 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP 178 (351)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (351)
.. ..+....+....+.-..-.|+|+|+++++++...|.-.||-.+.............. .-..-.|+|
T Consensus 268 dl--------~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~----~~~~p~~Sp 335 (425)
T COG0823 268 DL--------DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG----GNSNPVWSP 335 (425)
T ss_pred cC--------CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC----CCcCccCCC
Confidence 42 112233343333333466899999997777766665454444322222222221111 111568999
Q ss_pred CCCcEEEeec-CCe--EEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018700 179 HDVNAVAATC-ESS--VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (351)
Q Consensus 179 ~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (351)
+|++++..+. +|. |.+.|+.++.....+.... ...-.|.|+++.++...+.-+.=.++.+
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~ 399 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLV 399 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCCCCceEEEe
Confidence 9999888764 344 6667776665433333222 6677888888855544444333333333
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.59 E-value=0.00012 Score=59.01 Aligned_cols=203 Identities=12% Similarity=0.168 Sum_probs=115.3
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEecCCCCCcEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~ 137 (351)
+.+.+-...+..|+|.|+...|+++. ...+.|...+.. ++.++.+.-. .+..-.|++..++. ++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~---d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~~--~v 79 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQ---DEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNGR--YV 79 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEE---TTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STTE--EE
T ss_pred eECCCccCCccccEEcCCCCeEEEEE---CCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCCE--EE
Confidence 34455666799999999988888884 667777666643 4555555433 35677888987776 44
Q ss_pred EE-ecCCcEEEEEcCCCCCCccc------ccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc---CCcCceee
Q 018700 138 VS-IDEENIFLWSLDCSNKNAQV------QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---MGKTNSIE 207 (351)
Q Consensus 138 ~~-~~d~~v~iwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~ 207 (351)
.+ -.++.+.++++......... .......+...+.+++|+|.++.|+++-...-..+|.++. ........
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 44 45789999998543222111 1111122345689999999989898888777777777664 21111111
Q ss_pred c-------ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC---------CceeEEEecCCCCCeE
Q 018700 208 H-------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNPEYDGFI 268 (351)
Q Consensus 208 ~-------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l 268 (351)
. .. +..++++|...++++....+..|..+|.. ++++..+.-.. ...-.|+|.++| .+.
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LY 236 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLY 236 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT---EE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEE
Confidence 0 01 88999999988788889999999999954 66665554222 246789999998 555
Q ss_pred EEeeCCCeEEEE
Q 018700 269 LSAGTDSTVNLW 280 (351)
Q Consensus 269 ~s~~~dg~i~iw 280 (351)
+++ .-+..++|
T Consensus 237 Ivs-EpNlfy~f 247 (248)
T PF06977_consen 237 IVS-EPNLFYRF 247 (248)
T ss_dssp EEE-TTTEEEEE
T ss_pred EEc-CCceEEEe
Confidence 443 44444443
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.57 E-value=8.7e-06 Score=72.70 Aligned_cols=106 Identities=13% Similarity=0.031 Sum_probs=79.8
Q ss_pred EECCCCCcEEEeecCCeEEEEEccc-----CCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRS-----MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA----- 243 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----- 243 (351)
++.++|++... .++.|.+.|.++ .+....+..+. +..++++|||+++++++..+.++.|+|+.+...
T Consensus 283 a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 283 EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 34557776665 367899999998 35556666666 999999999998888888899999999987432
Q ss_pred ------ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 244 ------PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 244 ------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+.+.+. ...-...+|.++| ....|..-|..|..||+..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 1222222 2334567899999 8888889999999999876
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=5e-06 Score=74.67 Aligned_cols=181 Identities=12% Similarity=0.082 Sum_probs=123.6
Q ss_pred cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018700 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 200 (351)
..+.|++++. . .++.+..+|.|++++.... ....+. |... ..+|.++++++.||+|.|-.+-+.
T Consensus 40 D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~--~~~~~~-----~s~~------~~~Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 40 DAISCCAVHD--K-FFALGTHRGAVYLTTCQGN--PKTNFD-----HSSS------ILEGEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred hHHHHHHhhc--c-eeeeccccceEEEEecCCc--cccccc-----cccc------ccCCceEEEecCCCcEEEeeccCC
Confidence 4455665543 2 3667778899999998732 122221 1111 557999999999999999999988
Q ss_pred CcCceeecce-eEEEEcCCC-----CCcEEEEecCCCeEEEEecccCCccee-EeeCCCCceeEEEecCCCCCeEEEeeC
Q 018700 201 GKTNSIEHAH-VRNVDYDTK-----KKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGT 273 (351)
Q Consensus 201 ~~~~~~~~~~-v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~ 273 (351)
+...++.... +.+++++|+ .+ .+++|+.-| +.++.-+-.+.... .+..-.++|.++.|.- .++|-++.
T Consensus 104 ~~~~~~df~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand 178 (846)
T KOG2066|consen 104 DEITQYDFKRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWAND 178 (846)
T ss_pred ccceeEecCCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEecC
Confidence 8777776555 999999998 23 588899888 88887664443222 3455678999999974 78888887
Q ss_pred CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc------eEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED------SVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
+| |++||+.. .+.+..++.... -...+.|.++.+ |+.|- .-+|+|..++
T Consensus 179 ~G-v~vyd~~~-------------------~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPT-------------------RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGW-GDSVKICSIK 233 (846)
T ss_pred CC-cEEEeccc-------------------cceeeccCCCCCCCCcccCCCceEecCCCe--EEEec-CCeEEEEEEe
Confidence 77 89999987 333333322111 123578888754 55554 4478888776
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.53 E-value=7.2e-05 Score=65.70 Aligned_cols=228 Identities=13% Similarity=0.120 Sum_probs=117.1
Q ss_pred EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018700 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 138 (351)
+.+-...-....+.++|+++.+++. .||...|+... ..+... .+.-....|.+.++ +++
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-----g~geY~iyt~~---------~~r~k~-----~G~g~~~vw~~~n~--yAv 84 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-----GDGEYEIYTAL---------AWRNKA-----FGSGLSFVWSSRNR--YAV 84 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-----ETTEEEEEETT---------TTEEEE-----EEE-SEEEE-TSSE--EEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-----cCCEEEEEEcc---------CCcccc-----cCceeEEEEecCcc--EEE
Confidence 4444455668899999999888874 67788888744 233322 23455688999666 444
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCC
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDT 218 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~ 218 (351)
-....+|.|+.--+......+.... .+..+-. |..|+..+ ++.|.+||..+++.+..+....|..+.|++
T Consensus 85 ~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~ 154 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSD 154 (443)
T ss_dssp E-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-T
T ss_pred EECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEEC
Confidence 4447889996322222211222111 2333322 66666555 558999999999999888854489999999
Q ss_pred CCCcEEEEecCCCeEEEEecccC----------CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018700 219 KKKHLLVTAADESGIHLWDLRML----------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 288 (351)
++. +++..+.+ .+.+++.... ...+..+..-...|.+..|..+ -++.|... .|+.+--..
T Consensus 155 ~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkYl~~Ge---- 224 (443)
T PF04053_consen 155 DGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKYLVNGE---- 224 (443)
T ss_dssp TSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEEEETTE----
T ss_pred CCC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEEEEcCC----
Confidence 998 55555543 6777765531 0023333332567888889865 45554443 676622111
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
...+..+ ..++.=+...|... .+.....|+.|..+.++.
T Consensus 225 ---------------~~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 225 ---------------TGIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ---------------EEEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred ---------------cceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence 2223333 34566666777555 677777888888887763
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=1.8e-05 Score=74.40 Aligned_cols=199 Identities=14% Similarity=0.187 Sum_probs=125.5
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc--
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-- 197 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-- 197 (351)
.+.|.++.|..+... ++.+..+|.|.+-|..+.. ...... ....|.+++|+||++.++..+...++.+.+-
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~--~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLE--LEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccc--eeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 468999999999886 5555567888888877532 111111 1237999999999999999888888766432
Q ss_pred --ccCCcC-------------------ceee--c---------------------ceeEEEEcCCCCCcEEEEec----C
Q 018700 198 --RSMGKT-------------------NSIE--H---------------------AHVRNVDYDTKKKHLLVTAA----D 229 (351)
Q Consensus 198 --~~~~~~-------------------~~~~--~---------------------~~v~~~~~~~~~~~~l~~~~----~ 229 (351)
-..+++ ..+. . .|=.++.|--||+ ++++.. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccC
Confidence 111111 0111 0 0023589999998 566522 3
Q ss_pred C-CeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEee---CCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018700 230 E-SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (351)
Q Consensus 230 d-g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
+ ..|++||.+ +. +... ....+--.+++|-|.| .++++-. .|+.|.+|..+-... +
T Consensus 220 ~~RkirV~drE--g~-Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h----------------g 279 (1265)
T KOG1920|consen 220 GTRKIRVYDRE--GA-LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH----------------G 279 (1265)
T ss_pred CceeEEEeccc--ch-hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc----------------c
Confidence 3 799999976 22 2221 1222334678999999 8887754 356788887764111 2
Q ss_pred ccceeeccccceEEEEEeCCCCCceEEE---eeeCCeEEEeecCcc
Q 018700 305 SLLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVVVESVKPF 347 (351)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~dg~v~vw~~~~~ 347 (351)
.....+......|..++|+.++. +||. ......|++|-+..+
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 22323333344589999999988 7877 445556999988764
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.51 E-value=2.5e-06 Score=77.57 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=126.6
Q ss_pred cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEE
Q 018700 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRN 213 (351)
Q Consensus 135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~ 213 (351)
.++.++-...+..+|+++........... ..+.-+. .+++.+++|...|+|.+-|+++.+.+.++. .| -.-
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-----~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~si 220 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSA-----SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSI 220 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccC-----CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-ccccce
Confidence 36666666778888988654333222111 1233333 357889999999999999999999999988 66 333
Q ss_pred EEcCCCCCcEEEEecC---------CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 214 VDYDTKKKHLLVTAAD---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 214 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+|+-.|. +|++++. |.-|+|||+|.. +.+.-+.-+-++ .-+.|+|.-...++.++..|...+-|...
T Consensus 221 SDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeeccCC-eEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 34455676 7777764 455899999973 344444444443 56788998878899999999999998543
Q ss_pred CCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 285 SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
.+.. ..-+..+......+.++++++++. .+|-+..+|.|.+|.-.
T Consensus 298 lsNP---------------~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 298 LSNP---------------PAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cCCC---------------ccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCC
Confidence 1100 122233334445599999999999 89999999999999843
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=5.4e-06 Score=75.51 Aligned_cols=176 Identities=11% Similarity=0.119 Sum_probs=123.5
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 166 (351)
||-...+..+|+. ..+..+........|.-++. +++ .++++...|+|.+-|+++.+....+ ..
T Consensus 153 Gg~Q~~li~~Dl~---------~~~e~r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~~iht~-----~a 215 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLN---------TEKETRTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFETIHTF-----DA 215 (1118)
T ss_pred cchhhheeeeecc---------cceeeeeeeccCCceEEEEe--cCc-EEEeecccceEEeecCCcCceeeee-----ec
Confidence 3555567777776 44444444333434554443 344 3667777899999999864433332 34
Q ss_pred cccceeeeEECCCCCcEEEeec---------CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018700 167 MLHYLSGGAWDPHDVNAVAATC---------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLW 236 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~ 236 (351)
|+..+.++.. .|+.|++++. |..|+|||+|..+.+..+.... ..-+.|+|.-...+++.+..|...+-
T Consensus 216 Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 216 HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeec
Confidence 6667776554 5788888763 5678999999887777666433 66778888877688999999999999
Q ss_pred ecccCCcc---eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEc
Q 018700 237 DLRMLKAP---IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLV 282 (351)
Q Consensus 237 d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 282 (351)
|......+ +..+......+..+.+++.+ ..++.|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence 94433333 33344445669999999999 99999999999999973
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.7e-06 Score=69.91 Aligned_cols=225 Identities=11% Similarity=0.062 Sum_probs=143.0
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee--e
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL--D 117 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~--~ 117 (351)
.++.+..|.-.+..+--....+..|-..|.+++.+-++..+.+. +..|..++++|++ ....+..+ .
T Consensus 28 lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv---~d~Dhs~KvfDvE---------n~DminmiKL~ 95 (558)
T KOG0882|consen 28 LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSV---EDPDHSVKVFDVE---------NFDMINMIKLV 95 (558)
T ss_pred cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeec---cCcccceeEEEee---------ccchhhhcccc
Confidence 34555445444433333446677888999999999888666664 2348999999998 33333222 2
Q ss_pred ccccceeEEEecCCC-CCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEE
Q 018700 118 AHVGKINCVLWWSSG-RHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW 195 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~-~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 195 (351)
.-.+.+.++ .++.. ..+++++ ..++.+.++|-........... .-|..+|..+.+++-+..+++....|.|.-|
T Consensus 96 ~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 96 DLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---KLHFSPVKKIRYNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred cCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---ccccCceEEEEeeccccceeeccccceeEee
Confidence 222333222 22322 2224444 5689999999875443333322 2366799999999999999998889999999
Q ss_pred Eccc------CCcCceee---------cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---------
Q 018700 196 DLRS------MGKTNSIE---------HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--------- 249 (351)
Q Consensus 196 d~~~------~~~~~~~~---------~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------- 249 (351)
..+. .+....++ ... ..++.|+|++. .+.+-+.|..|++++.++ ++.++.+.
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~Kt-GklvqeiDE~~t~~~~q 249 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKT-GKLVQEIDEVLTDAQYQ 249 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEecc-chhhhhhhccchhhhhc
Confidence 9873 11111111 111 88999999998 688888999999999986 43332221
Q ss_pred -----------------------CCCC-ceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 250 -----------------------GHTH-WTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 250 -----------------------~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
-|.. .-+.+.|...+ ++|+-++-=| |++.++.+
T Consensus 250 ~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~-~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 250 PKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG-NFLLYGTILG-IKVINLDT 306 (558)
T ss_pred cccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC-CEEEeeccee-EEEEEeec
Confidence 1221 22456788888 8888777655 78888776
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.3e-06 Score=72.18 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=87.1
Q ss_pred CcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018700 166 GMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (351)
Q Consensus 166 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (351)
++...|.+++|+|..+ .+..++.+.+|+|.|+++...+..+.... +.+++|.-+..+.++.|..+|.|.+||+|.+..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 4556899999999887 56678899999999999988877777444 999999999998999999999999999998776
Q ss_pred ceeEeeC--CCCceeEEEe------cCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 244 PIQELPG--HTHWTWAVCC------NPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 244 ~~~~~~~--~~~~v~~~~~------~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
++..+.+ ...+|..++. .+.| .+|+....+ +..|++..
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~ 316 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVF 316 (463)
T ss_pred hHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhc
Confidence 6665543 2344544433 2334 455555544 56777654
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=1.7e-05 Score=69.16 Aligned_cols=122 Identities=14% Similarity=0.172 Sum_probs=81.7
Q ss_pred CCcceeeeeeCCCC-CceEEEEeecCCcce----EEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCCCcEE
Q 018700 64 HPNEIWDLSSCPFD-QRIFSTVFSTGESYG----AAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 64 h~~~v~~i~~~~~~-~~l~~~~~~~~~d~~----i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~ 137 (351)
-+....++.|+-.. ..+.++-.+-+.++. -.+|++.. ...+.+... -.....|.|++++|+... ++
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r-------~klqrvsvtsipL~s~v~~ca~sp~E~k-Lv 275 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR-------NKLQRVSVTSIPLPSQVICCARSPSEDK-LV 275 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec-------CceeEEEEEEEecCCcceEEecCcccce-EE
Confidence 34555677887643 344454333334443 34566651 122322222 246778999999999986 88
Q ss_pred EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018700 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (351)
Q Consensus 138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 200 (351)
.|+.||+|.+||...+.. ..... .-..+.++|+|+|..+++++..|.+.+||+.-.
T Consensus 276 lGC~DgSiiLyD~~~~~t--~~~ka-----~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGVT--LLAKA-----EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEecCCeEEEEEcCCCee--eeeee-----cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 889999999999985321 11111 125788999999999999999999999998644
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.43 E-value=4.8e-05 Score=70.57 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=91.2
Q ss_pred CCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC-------CCcEEEeecCCeEEEEEcccCC--
Q 018700 132 GRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-------DVNAVAATCESSVQFWDLRSMG-- 201 (351)
Q Consensus 132 ~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~iwd~~~~~-- 201 (351)
.+.+++.. .....|+-.|++.++-...-.... ..+|..+ .|+ ....+.|-.++.+..||+|-..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~----~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k 565 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD----DIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK 565 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCC----CcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence 34344444 445778888888654333222211 1123333 332 2346777788999999999643
Q ss_pred cCc----eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018700 202 KTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (351)
Q Consensus 202 ~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 276 (351)
.+. .+.... ..|++-..+| .||+|+.+|.||+||-- ..+....+.+-..+|..|..+.|| +++++.+ +..
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~ty 640 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADG-KWILATC-KTY 640 (794)
T ss_pred eeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cce
Confidence 111 111111 8899999998 58899999999999943 244455566778999999999999 6666544 456
Q ss_pred EEEEEcCC
Q 018700 277 VNLWLVST 284 (351)
Q Consensus 277 i~iwd~~~ 284 (351)
|.+++...
T Consensus 641 LlLi~t~~ 648 (794)
T PF08553_consen 641 LLLIDTLI 648 (794)
T ss_pred EEEEEEee
Confidence 88888753
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=0.00014 Score=59.05 Aligned_cols=183 Identities=9% Similarity=0.031 Sum_probs=105.9
Q ss_pred CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC
Q 018700 76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK 155 (351)
Q Consensus 76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 155 (351)
++..++++ +.++.+..||.. +++.+-.... ..++.......++. +++...++.++.+|..+++.
T Consensus 35 ~~~~v~~~----~~~~~l~~~d~~---------tG~~~W~~~~-~~~~~~~~~~~~~~--v~v~~~~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 35 DGGRVYVA----SGDGNLYALDAK---------TGKVLWRFDL-PGPISGAPVVDGGR--VYVGTSDGSLYALDAKTGKV 98 (238)
T ss_dssp ETTEEEEE----ETTSEEEEEETT---------TSEEEEEEEC-SSCGGSGEEEETTE--EEEEETTSEEEEEETTTSCE
T ss_pred eCCEEEEE----cCCCEEEEEECC---------CCCEEEEeec-cccccceeeecccc--cccccceeeeEecccCCcce
Confidence 45666664 478899999987 5565555543 22221112223333 55555678999999888776
Q ss_pred CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------e-------EEEEcCCCCCc
Q 018700 156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V-------RNVDYDTKKKH 222 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v-------~~~~~~~~~~~ 222 (351)
............. ..........+..++++..++.|..+|+++|+.+....... + ..+.+. ++
T Consensus 99 ~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 174 (238)
T PF13360_consen 99 LWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-- 174 (238)
T ss_dssp EEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--
T ss_pred eeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC--
Confidence 6553221111100 11112222236778888889999999999998766654321 1 233333 34
Q ss_pred EEEEecCCCe-EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 223 LLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 223 ~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.++.+..++. +.+ |+.+ ++.+.... ...+..+ ....+ ..|+.++.++.|..||.++
T Consensus 175 ~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 175 RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTT
T ss_pred EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCC
Confidence 3555666664 555 9887 44333222 2233332 34555 6677777999999999998
No 330
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.36 E-value=0.0011 Score=58.71 Aligned_cols=246 Identities=13% Similarity=0.072 Sum_probs=129.5
Q ss_pred eeeeeeCCCCCceEEEEeecCCc-ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec-----
Q 018700 68 IWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID----- 141 (351)
Q Consensus 68 v~~i~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~----- 141 (351)
+...+++|++++++.+...+|.| ..++++|+. +++.+...- ....-..+.|.++++.++.+...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~---------tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE---------TGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT---------TTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECC---------CCcCcCCcc-cccccceEEEeCCCCEEEEEEeCccccc
Confidence 34678899999988776444444 579999998 444443211 11122239999999864455422
Q ss_pred -----CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---C-CeEEEEEcccC----CcCceeec
Q 018700 142 -----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---E-SSVQFWDLRSM----GKTNSIEH 208 (351)
Q Consensus 142 -----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~----~~~~~~~~ 208 (351)
...|+.|.+.+......++...... ......+..++++++++.... + ..+.+.|+..+ .....+..
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~-~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDE-PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTC-TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred ccCCCCcEEEEEECCCChHhCeeEEeecCC-CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 2247888887654332233222111 112567889999999886542 3 46788888764 12222221
Q ss_pred ce---eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCc--ceeEeeCCCC--ceeEEEecCCCCCeEEEeeCCC--e
Q 018700 209 AH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA--PIQELPGHTH--WTWAVCCNPEYDGFILSAGTDS--T 276 (351)
Q Consensus 209 ~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg--~ 276 (351)
.. ...+... .+. +++... .++.|...++..... ....+..+.. .+..+.. .+..+++....++ .
T Consensus 275 ~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSR 350 (414)
T ss_dssp SSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred CCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccE
Confidence 11 2333333 444 444332 346777778776442 1224445555 3444444 3425566666565 5
Q ss_pred EEEEEcC-CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee---CCeEEEeecCcc
Q 018700 277 VNLWLVS-TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY---DGRVVVESVKPF 347 (351)
Q Consensus 277 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~~ 347 (351)
|+++++. . .........-.+.|..+...+++..+.++.+. -+++..||+.+.
T Consensus 351 l~v~~~~~~-------------------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 351 LRVYDLDDG-------------------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEETT-T-------------------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEECCCC-------------------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 7788887 3 22222222223446666666666655555442 346777777653
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.35 E-value=0.00094 Score=58.77 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=104.5
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccC-c-ccceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeeccee
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-M-LHYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV 211 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v 211 (351)
++.+..++.+..+|..+++...........+ + ......+.-+| .+..+++++.++.+..+|+.+++.+........
T Consensus 208 v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 287 (394)
T PRK11138 208 AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV 287 (394)
T ss_pred EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc
Confidence 5566668889888988776544332111000 0 00011111112 245677788899999999999987665543222
Q ss_pred EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018700 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (351)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 290 (351)
..+.. .+. .++.++.+|.+..+|..+ ++.+-....-. ....+.... + ..++.++.||.|.+.|..+
T Consensus 288 ~~~~~--~~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~t------ 354 (394)
T PRK11138 288 NDFAV--DGG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINRED------ 354 (394)
T ss_pred cCcEE--ECC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCC------
Confidence 22222 233 566678899999999986 44333222111 111222222 3 5778889999999999988
Q ss_pred CCcccccCCcccccccceeeccccceEEE-EEeCCCCCceEEEeeeCCeEEEeec
Q 018700 291 PSESLVESPNQRANSLLNSYSDYEDSVYG-LAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
++.+...+-....+.+ ... .+. .|+.++.||.|+.++.
T Consensus 355 -------------G~~~~~~~~~~~~~~s~P~~--~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 355 -------------GRFVAQQKVDSSGFLSEPVV--ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred -------------CCEEEEEEcCCCcceeCCEE--ECC-EEEEEeCCceEEEEeC
Confidence 7776665433222322 222 233 5777888999988875
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.33 E-value=0.00055 Score=55.20 Aligned_cols=200 Identities=11% Similarity=0.081 Sum_probs=108.7
Q ss_pred eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018700 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (351)
Q Consensus 115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (351)
.+.+-...+..++|+|+...++++....+.|..++.+ ++....+.. . + .....++++..++.++++.-.++.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-~--g-~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-D--G-FGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--S--S--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-C--C-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 3445556799999999988655555667888777764 332222211 1 1 236778888877766666556899999
Q ss_pred EEcccCCcC------ceee--cc--e---eEEEEcCCCCCcEEEEecCCCeEEEEeccc--CCcceeEe--------eCC
Q 018700 195 WDLRSMGKT------NSIE--HA--H---VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQEL--------PGH 251 (351)
Q Consensus 195 wd~~~~~~~------~~~~--~~--~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~--------~~~ 251 (351)
+++...... ..+. .. + +..++|+|.+.. |+.+-+..-..+|.++. ....+... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 988443211 1111 11 1 889999998874 44566666667777653 11111111 123
Q ss_pred CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec--c--c-----cceEEEEEe
Q 018700 252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--D--Y-----EDSVYGLAW 322 (351)
Q Consensus 252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~-----~~~v~~~~~ 322 (351)
...+.+++++|....+++....+..|..+|.. ++.+..+. . | -...-+|+|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--------------------G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--------------------GRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT----------------------EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCC--------------------CCEEEEEEeCCcccCcccccCCccEEEE
Confidence 35578999999876788888888899999954 44443332 1 1 123578999
Q ss_pred CCCCCceEEEeeeCCeEEEe
Q 018700 323 SSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 323 ~~~~~~~l~s~~~dg~v~vw 342 (351)
.++|. |...+.-+..+++
T Consensus 230 d~~G~--LYIvsEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGN--LYIVSEPNLFYRF 247 (248)
T ss_dssp -TT----EEEEETTTEEEEE
T ss_pred CCCCC--EEEEcCCceEEEe
Confidence 99987 3344556655554
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00074 Score=58.89 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=130.9
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---CCeEEEEEcc
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLR 198 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~ 198 (351)
.-..++.++.+...++....++.|.+.|.............. ....++++|+++.+.++.. ++.+.+.|..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc------CCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 345778889998756666667999999966433332222211 5678899999988887754 6899999988
Q ss_pred cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE-----eeCCCCceeEEEecCCCCCeEEEee
Q 018700 199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE-----LPGHTHWTWAVCCNPEYDGFILSAG 272 (351)
Q Consensus 199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~ 272 (351)
+.+.......+. ...++++|++..++++-..++.|.++|... .. +.. ...-...-..+.++|+|....++..
T Consensus 149 t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 149 TNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred CCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC-cc-eeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 888777765544 788999999996666666889999999765 22 221 0112233467889999943444444
Q ss_pred CC--CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc-eEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 273 TD--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 273 ~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+ +.+...|... .........-.. ....+..+|+|....+.-...+.+.+-|...
T Consensus 227 ~~~~~~v~~id~~~-------------------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 227 GSGSNNVLKIDTAT-------------------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred cCCCceEEEEeCCC-------------------ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 43 5888888877 444433111111 3566888999884444434556777766554
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00032 Score=64.03 Aligned_cols=214 Identities=10% Similarity=0.099 Sum_probs=121.4
Q ss_pred CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcc-eeeeeeCCCCCceEEEEeecCCcc-eEEEEEcccc
Q 018700 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE-IWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPEL 101 (351)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~ 101 (351)
+++.+.++++|+. ++.| +.+... ......+..++.. |..+-.-.+...|++.+.+...+. .++||+++..
T Consensus 31 ~~s~~~~vvigt~----~G~V--~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 31 CSSSTGSVVIGTA----DGRV--VILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred EcCCCceEEEeec----cccE--EEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 5667788888863 3444 444332 1222556666666 444433333345666542222122 6999999843
Q ss_pred cCCCCCCcceee--eeeec-----cccceeEEEecCCCCCcEEEEecCCcEEEEEcCC--CCCCcccccccccCccccee
Q 018700 102 YGQLNSPQLERI--AALDA-----HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC--SNKNAQVQSKQSSGMLHYLS 172 (351)
Q Consensus 102 ~~~~~~~~~~~~--~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~v~ 172 (351)
.+. . ...++ ..+.. ...++.+++.+.+-+ .++.|-.+|.|..+.=+- .......... .-..+|+
T Consensus 103 ~~n--~-sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~---~~~~pIT 175 (933)
T KOG2114|consen 103 DKN--N-SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSH---RGKEPIT 175 (933)
T ss_pred CCC--C-CcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeec---cCCCCce
Confidence 211 1 12333 12222 245788899988866 366666789998885331 1111111111 1245899
Q ss_pred eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018700 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
++.+..++..++.+..-..|.+|.+....+.......+ ++|..+++....++++++ ..+.+||... ..+...+.
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCCC-cceeeeec
Confidence 99999888874444455679999998544233322233 888899876653444333 4799999885 44566666
Q ss_pred -CCCCce
Q 018700 250 -GHTHWT 255 (351)
Q Consensus 250 -~~~~~v 255 (351)
+|....
T Consensus 253 ~g~kk~~ 259 (933)
T KOG2114|consen 253 VGEKKEM 259 (933)
T ss_pred CCCeEEE
Confidence 555443
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=5.4e-05 Score=68.84 Aligned_cols=288 Identities=11% Similarity=0.017 Sum_probs=156.4
Q ss_pred ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018700 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL 101 (351)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~ 101 (351)
.+++|....|++++++....+.+.++.=..+. .+-...+-.+.+++|+|..-.|+. |=.-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-----qr~Vt~P~hatSLCWHpe~~vLa~----gwe~g~~~v~~~~-- 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEP-----QRDVTYPVHATSLCWHPEEFVLAQ----GWEMGVSDVQKTN-- 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCC-----CcccccceehhhhccChHHHHHhh----ccccceeEEEecC--
Confidence 45889999999999887777887766543331 111123345567999997655555 3467889999976
Q ss_pred cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeeeEECCC
Q 018700 102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGGAWDPH 179 (351)
Q Consensus 102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~ 179 (351)
..+.-.....|..+|..+.||++|.. ++++..-|.|.+|...-.++.. .++......+ -...+...+++
T Consensus 90 -------~~e~htv~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~-ltl~cfRL~~~ 160 (1416)
T KOG3617|consen 90 -------TTETHTVVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ-LTLWCFRLSYD 160 (1416)
T ss_pred -------CceeeeeccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEeeeccccccchhhhhHhhce-eeEEEEecCCC
Confidence 33444445679999999999999994 5555667999999887332222 2222222221 13344455665
Q ss_pred CCc------EEEeecCCeEE-EEEcccCCcCceeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018700 180 DVN------AVAATCESSVQ-FWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT 252 (351)
Q Consensus 180 ~~~------l~~~~~d~~i~-iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 252 (351)
+.- .++++.+..+- .++.+.......... .=.|+|. .++.++.+|+|+-.|-. ++.....+. .
T Consensus 161 ~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k------sgv~~g~-~F~~~~~~GtVyyvdq~--g~~~~V~k~-d 230 (1416)
T KOG3617|consen 161 REEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK------SGVPKGT-EFLFAGKSGTVYYVDQN--GRQRTVHKL-D 230 (1416)
T ss_pred hHHhhhhhhhhccCchhhhcccccCccchhhccccc------cCCCCCc-EEEEEcCCceEEEEcCC--CcEEEEEEc-c
Confidence 321 23333333332 222221111111110 1236776 67778899999888855 333333321 1
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC--------cccccC--Cccccc----ccceeeccccceEE
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS--------ESLVES--PNQRAN----SLLNSYSDYEDSVY 318 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~--~~~~~~----~~~~~~~~~~~~v~ 318 (351)
+. ..+-|.+.- .-+..-..+-++.++-....+..+... +...+. .....+ ..-..+ .....++
T Consensus 231 S~-vQmLf~~~~-eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~ 307 (1416)
T KOG3617|consen 231 SE-VQMLFMGYC-EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGIL 307 (1416)
T ss_pred ch-HHHHHhccc-ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceE
Confidence 11 234455544 444444444444444333211100000 000000 000001 000111 1234689
Q ss_pred EEEeCCCCCceEEEeeeCCeEEEee
Q 018700 319 GLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 319 ~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
+++++..+. .++.|...|.+.+|.
T Consensus 308 c~cY~~~~~-~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 308 CMCYGEKEI-RLWAGTKEGNVTIWL 331 (1416)
T ss_pred EEEEeccce-EEEecccCCcEEEee
Confidence 999999887 799999999999996
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.31 E-value=0.00025 Score=61.24 Aligned_cols=232 Identities=16% Similarity=0.189 Sum_probs=121.2
Q ss_pred CCCCCceEEEEee-----cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018700 74 CPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148 (351)
Q Consensus 74 ~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw 148 (351)
|||+++++..... -+..+.+.|||+. +.+ ...+......+....|+|+|+. ++-..++.|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~---------~~~-~~~l~~~~~~~~~~~~sP~g~~--~~~v~~~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE---------TGE-ITPLTPPPPKLQDAKWSPDGKY--IAFVRDNNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETT---------TTE-EEESS-EETTBSEEEE-SSSTE--EEEEETTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecC---------CCc-eEECcCCccccccceeecCCCe--eEEEecCceEEE
Confidence 5777776664211 1123468889987 322 2233233667889999999994 444457899999
Q ss_pred EcCCCCCCccccccc---ccCc---------ccceeeeEECCCCCcEEEeec-CCe------------------------
Q 018700 149 SLDCSNKNAQVQSKQ---SSGM---------LHYLSGGAWDPHDVNAVAATC-ESS------------------------ 191 (351)
Q Consensus 149 d~~~~~~~~~~~~~~---~~~~---------~~~v~~~~~~~~~~~l~~~~~-d~~------------------------ 191 (351)
++.++.......... ..|. ...-.++-|+||+++|+.... +..
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y 148 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY 148 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE-
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc
Confidence 887652221111110 0000 113467889999998877642 221
Q ss_pred -----------EEEEEcccCCcCc-eee-----cce-eEEEEcCCCCCcEEE-EecCC---CeEEEEecccCCcceeEee
Q 018700 192 -----------VQFWDLRSMGKTN-SIE-----HAH-VRNVDYDTKKKHLLV-TAADE---SGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 192 -----------i~iwd~~~~~~~~-~~~-----~~~-v~~~~~~~~~~~~l~-~~~~d---g~i~i~d~~~~~~~~~~~~ 249 (351)
+.++|+.+++... ... ..+ +..+.|.+++..+++ ....+ -.+.++|..+....+....
T Consensus 149 Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 149 PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp -BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 3356665554321 111 112 889999999872333 22322 2466777765222222222
Q ss_pred CCCCce---eEEEec-CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE-EEeCC
Q 018700 250 GHTHWT---WAVCCN-PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-LAWSS 324 (351)
Q Consensus 250 ~~~~~v---~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ 324 (351)
....+| ....|. +++..++.....||.-+|+-+... +.....+....-.|.. +.|++
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~------------------~~~~~~lT~G~~~V~~i~~~d~ 290 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD------------------GGKPRQLTSGDWEVTSILGWDE 290 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT------------------SSEEEESS-SSS-EEEEEEEEC
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc------------------ccceeccccCceeecccceEcC
Confidence 233333 345554 676577777778886666655441 2223344444445644 67788
Q ss_pred CCCceEEEeee
Q 018700 325 REPWIFASLSY 335 (351)
Q Consensus 325 ~~~~~l~s~~~ 335 (351)
++..++.++..
T Consensus 291 ~~~~iyf~a~~ 301 (353)
T PF00930_consen 291 DNNRIYFTANG 301 (353)
T ss_dssp TSSEEEEEESS
T ss_pred CCCEEEEEecC
Confidence 87756666665
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.27 E-value=2.3e-05 Score=72.64 Aligned_cols=134 Identities=10% Similarity=0.133 Sum_probs=94.6
Q ss_pred cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCC------cEEEEecCCCeEEEEecccCCcceeEee----CCCCcee
Q 018700 188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK------HLLVTAADESGIHLWDLRMLKAPIQELP----GHTHWTW 256 (351)
Q Consensus 188 ~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~ 256 (351)
....|+-.|++.|+.+....... +.-..+.|+.+ .-.+.|-++..+..||.|..+..+..-. ......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 56889999999999988887544 43444444321 1234588889999999997543322211 2334567
Q ss_pred EEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018700 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
|++-+.+| +||.|+.+|.||+||.-. ...-..+.+-..+|.+|+.+.||+|+|||| +
T Consensus 582 ~~aTt~~G--~iavgs~~G~IRLyd~~g-------------------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~ 638 (794)
T PF08553_consen 582 CFATTEDG--YIAVGSNKGDIRLYDRLG-------------------KRAKTALPGLGDPIIGIDVTADGKWILATC--K 638 (794)
T ss_pred EEEecCCc--eEEEEeCCCcEEeecccc-------------------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--c
Confidence 78777776 899999999999999543 233334556678999999999999888777 4
Q ss_pred CeEEEeec
Q 018700 337 GRVVVESV 344 (351)
Q Consensus 337 g~v~vw~~ 344 (351)
..|.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 57777764
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=8.2e-05 Score=67.21 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=110.5
Q ss_pred cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCC
Q 018700 28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS 107 (351)
Q Consensus 28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~ 107 (351)
.+.|+.|+ +.+.+++.+..... ...+.|... .-+|.+++++ +.||+|.|-.+-
T Consensus 49 ~~~~~~Gt----H~g~v~~~~~~~~~-----~~~~~~s~~------~~~Gey~asC----S~DGkv~I~sl~-------- 101 (846)
T KOG2066|consen 49 DKFFALGT----HRGAVYLTTCQGNP-----KTNFDHSSS------ILEGEYVASC----SDDGKVVIGSLF-------- 101 (846)
T ss_pred cceeeecc----ccceEEEEecCCcc-----ccccccccc------ccCCceEEEe----cCCCcEEEeecc--------
Confidence 34556665 45677776665532 222334333 4568888885 899999999887
Q ss_pred CcceeeeeeeccccceeEEEecCC----CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcE
Q 018700 108 PQLERIAALDAHVGKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183 (351)
Q Consensus 108 ~~~~~~~~~~~h~~~v~~~~~~~~----~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 183 (351)
+.+...++ ....++.+++++|+ ....+++++.-| +.++.-+=-+....+.... ..++|.++.|. |+++
T Consensus 102 -~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~---~eG~I~~i~W~--g~lI 173 (846)
T KOG2066|consen 102 -TDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE---GEGPIHSIKWR--GNLI 173 (846)
T ss_pred -CCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec---CccceEEEEec--CcEE
Confidence 34444444 34568999999998 122377777667 7777644222222222222 23489999996 5666
Q ss_pred EEeecCCeEEEEEcccCCcCceeecce--------eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018700 184 VAATCESSVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (351)
Q Consensus 184 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (351)
+-++.+ .|++||+.+++.+..++.++ ...+.|.++.+ ++.|=. .+|+|..++
T Consensus 174 AWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWG-DSVKICSIK 233 (846)
T ss_pred EEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEecC-CeEEEEEEe
Confidence 665544 59999999988776666443 66788988875 454544 378888887
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.26 E-value=0.0019 Score=54.90 Aligned_cols=281 Identities=15% Similarity=0.218 Sum_probs=125.2
Q ss_pred CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc
Q 018700 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY 102 (351)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~ 102 (351)
+..++.+|+.++. .....+++++++... .+ .++.... .......++|+++.++... ....|+--|+.
T Consensus 43 ft~dG~kllF~s~-~dg~~nly~lDL~t~--~i--~QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~~~l~~vdL~--- 110 (386)
T PF14583_consen 43 FTDDGRKLLFASD-FDGNRNLYLLDLATG--EI--TQLTDGPGDNTFGGFLSPDDRALYYVK----NGRSLRRVDLD--- 110 (386)
T ss_dssp B-TTS-EEEEEE--TTSS-EEEEEETTT---EE--EE---SS-B-TTT-EE-TTSSEEEEEE----TTTEEEEEETT---
T ss_pred cCCCCCEEEEEec-cCCCcceEEEEcccC--EE--EECccCCCCCccceEEecCCCeEEEEE----CCCeEEEEECC---
Confidence 4567778888654 233455666666553 22 3333333 3344677788888877652 34577777777
Q ss_pred CCCCCCcceeeeeeeccccceeEEEecC--CCCCcEEEEec----CC-------------------cEEEEEcCCCCCCc
Q 018700 103 GQLNSPQLERIAALDAHVGKINCVLWWS--SGRHDKLVSID----EE-------------------NIFLWSLDCSNKNA 157 (351)
Q Consensus 103 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~----d~-------------------~v~iwd~~~~~~~~ 157 (351)
+.+....+.....-+-...|.. ++. .+++.. |. .|.--|+.+++...
T Consensus 111 ------T~e~~~vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 111 ------TLEERVVYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp ------T--EEEEEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred ------cCcEEEEEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 4444445555556665566643 344 444311 11 13333444332211
Q ss_pred ccccccccCcccceeeeEECCCCCcEEEeecCC-----eEEEEEcccC-CcCcee---ecce-eEEEEcCCCCCcEEEEe
Q 018700 158 QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSM-GKTNSI---EHAH-VRNVDYDTKKKHLLVTA 227 (351)
Q Consensus 158 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~-~~~~~~---~~~~-v~~~~~~~~~~~~l~~~ 227 (351)
.... ...+..+.|+|....+++-+..| .-+||-+++. .....+ .... +..=-|.|+|..+.+.+
T Consensus 183 v~~~------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 183 VFED------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp EEEE------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred EEec------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence 1111 22567889999888888776443 2366766542 222222 1122 66677899998555533
Q ss_pred c----CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC----------------eEEEEEcCCCCC
Q 018700 228 A----DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS----------------TVNLWLVSTSNH 287 (351)
Q Consensus 228 ~----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----------------~i~iwd~~~~~~ 287 (351)
. .+..|.-+|+.+... . .+. ...+....--+++| .+++-=+.|. .|+++++.....
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~-~-~~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGER-R-RLM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EETTT--EEEEEE-TTT--E-E-EEE-EE-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTEE
T ss_pred ecCCCCceEEEeeCCCCCCc-e-EEE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 3 344677778776332 2 121 12233445557888 6666444432 445566654100
Q ss_pred CCCCCcccccCCcccccccceeeccccc-eEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 288 DELPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
... ... ......+.++.. .=-...|+||++++|.+....|...||=+
T Consensus 333 ~~l----~~h------~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 333 RKL----ARH------DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEE----EE-------------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eee----eec------cCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 000 000 000001111111 01347899999999999988888777644
No 340
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.0012 Score=55.29 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=126.1
Q ss_pred eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEE
Q 018700 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS 149 (351)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd 149 (351)
...|.++...|+-+ .-..+.|.-|+.. .+ ....+. +.+.+.++..-..+.. ++++. ..+.+++
T Consensus 29 gP~w~~~~~~L~w~---DI~~~~i~r~~~~---------~g-~~~~~~-~p~~~~~~~~~d~~g~-Lv~~~--~g~~~~~ 91 (307)
T COG3386 29 GPVWDPDRGALLWV---DILGGRIHRLDPE---------TG-KKRVFP-SPGGFSSGALIDAGGR-LIACE--HGVRLLD 91 (307)
T ss_pred CccCcCCCCEEEEE---eCCCCeEEEecCC---------cC-ceEEEE-CCCCcccceeecCCCe-EEEEc--cccEEEe
Confidence 34577777766554 3456677777765 11 222332 2333344444344431 44432 3466677
Q ss_pred cCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----------CCeEEEEEcccCCcCceeecce---eEEEE
Q 018700 150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------ESSVQFWDLRSMGKTNSIEHAH---VRNVD 215 (351)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~---v~~~~ 215 (351)
.+.+..................+.+...|+|.+.+.... -|.|+.+|. .+.....+. .+ .+.++
T Consensus 92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla 169 (307)
T COG3386 92 PDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLA 169 (307)
T ss_pred ccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceE
Confidence 654433222222221122246778889999887665433 133444443 343333333 33 78999
Q ss_pred cCCCCCcEEEEecCCCeEEEEecccC-C----c-ceeEeeCCCCceeEEEecCCCCCeEEEeeCCC-eEEEEEcCCCCCC
Q 018700 216 YDTKKKHLLVTAADESGIHLWDLRML-K----A-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHD 288 (351)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~----~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~ 288 (351)
||||++.++++=+..+.|+-|++... . + ....+....+..-.++...+| .+.+++..+| .|..|+..
T Consensus 170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd----- 243 (307)
T COG3386 170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD----- 243 (307)
T ss_pred ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-----
Confidence 99999855665566688999987621 1 1 111222233555667777787 6665444444 88888887
Q ss_pred CCCCcccccCCcccccccceeeccccceEEEEEeC-CCCCceEEEeeeC
Q 018700 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD 336 (351)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d 336 (351)
++++..+.-....+++++|- |+.+.++++....
T Consensus 244 ---------------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 244 ---------------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ---------------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 46666666554567888885 4455466665544
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.21 E-value=0.0024 Score=56.22 Aligned_cols=168 Identities=10% Similarity=0.021 Sum_probs=90.9
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v 171 (351)
.|+||+.. ++.+.++.--.+.|.++.|+.+.. +++-..||.+++||+.... ....... -....|
T Consensus 62 ~I~iys~s----------G~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~---~fsl~~~-i~~~~v 125 (410)
T PF04841_consen 62 SIQIYSSS----------GKLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF---QFSLGEE-IEEEKV 125 (410)
T ss_pred EEEEECCC----------CCEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce---eechhhh-ccccCc
Confidence 58888875 456666554458999999999766 5555789999999997322 1111100 000112
Q ss_pred -----eeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeec-------ce----eE-EEEcCCCCCcEEEEecCCCeE
Q 018700 172 -----SGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEH-------AH----VR-NVDYDTKKKHLLVTAADESGI 233 (351)
Q Consensus 172 -----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-------~~----v~-~~~~~~~~~~~l~~~~~dg~i 233 (351)
....+..+| +++-..++.+.+..--... ....+.. .+ .. ...++.+.. ..+....++.+
T Consensus 126 ~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i 202 (410)
T PF04841_consen 126 LECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETI 202 (410)
T ss_pred ccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEE
Confidence 122222233 3333344444443222111 1111100 01 11 122334444 34444455566
Q ss_pred EEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 234 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+.+-... +. +. ..+++..++.||++ +++|.-..+|.+.+.....
T Consensus 203 ~~i~~~~~-~~---i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 203 YIIDENSF-KQ---ID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred EEEEcccc-cc---cc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcc
Confidence 65553321 11 22 24689999999999 9999999999998887655
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.14 E-value=0.0032 Score=52.48 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=138.5
Q ss_pred cceEEEeeeeeC-CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEE--Eeec----CCcceEEEEEccc
Q 018700 28 HTSFLTGTLSLK-EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST--VFST----GESYGAAIWQIPE 100 (351)
Q Consensus 28 ~~~~~~g~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~--~~~~----~~d~~i~vw~~~~ 100 (351)
.+|+++-..... -..++++++-+ .++++-..-.+. ...+..+|+++.+.++ .++- -....|.+||..
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d--~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~- 75 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDAD--SGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ- 75 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETT--TTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-
T ss_pred CcEEEEECCccccccceEEEEECC--CCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-
Confidence 356666543221 12456666544 344432222222 2346679999987754 2332 233469999988
Q ss_pred ccCCCCCCcceeeeeeecccc-------ceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018700 101 LYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (351)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (351)
+..+...+.-... ....++++.+++++++.- +--..|.|-|+...+-...+ .. ++ ..
T Consensus 76 --------TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~--PG----C~ 140 (342)
T PF06433_consen 76 --------TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DT--PG----CW 140 (342)
T ss_dssp --------TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EG--TS----EE
T ss_pred --------cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-cC--CC----EE
Confidence 4555444322211 123356788888654444 33567888888753322211 11 11 11
Q ss_pred eeEECCCCCcEEEeecCCeEEEEEcc-cCCcCceee----cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-
Q 018700 173 GGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIE----HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA- 243 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~- 243 (351)
.+ +-...+.+.+-|.||.+.-..+. .|+...... ... +..-++...+. .++--+.+|.|+-.|+.....
T Consensus 141 ~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 141 LI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAK 218 (342)
T ss_dssp EE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEE
T ss_pred EE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCccc
Confidence 11 11112457788899999888887 444432111 000 22333333333 344467889999888875221
Q ss_pred ceeEeeCCC----------CceeEEEecCCCCCeEEEee--------CCC--eEEEEEcCCCCCCCCCCcccccCCcccc
Q 018700 244 PIQELPGHT----------HWTWAVCCNPEYDGFILSAG--------TDS--TVNLWLVSTSNHDELPSESLVESPNQRA 303 (351)
Q Consensus 244 ~~~~~~~~~----------~~v~~~~~~~~~~~~l~s~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
....+..-. +.-.-+++++.. ..|+..- .|+ .|-++|+.+
T Consensus 219 ~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t------------------- 278 (342)
T PF06433_consen 219 FGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKT------------------- 278 (342)
T ss_dssp EEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTT-------------------
T ss_pred ccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCC-------------------
Confidence 112221111 111234555444 2222221 122 344456666
Q ss_pred cccceeeccccceEEEEEeCCCCCceEEEe-eeCCeEEEeecCcc
Q 018700 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASL-SYDGRVVVESVKPF 347 (351)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~vw~~~~~ 347 (351)
.+.+..+.- ..++.+|+.+.+..-+|.+. ..++.+.+||..+-
T Consensus 279 ~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 279 HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 677777753 34578999998776566554 46899999998753
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.00011 Score=65.88 Aligned_cols=199 Identities=13% Similarity=-0.004 Sum_probs=112.9
Q ss_pred EecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC----CeEEEEEcccCCc
Q 018700 127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----SSVQFWDLRSMGK 202 (351)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~ 202 (351)
=+.|+|+.+...+-..+.+.+.|..+.+...++.... ....++++|+++++++.+.+ .++...+......
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~ 272 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW 272 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeeccccCce
Confidence 3556666422233335667777777533333333222 44567899999998887632 2333333322221
Q ss_pred CceeecceeEEEEcCCCCCcEEEEecCCCeEEEEeccc----CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018700 203 TNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM----LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278 (351)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 278 (351)
...+.... .-++.++|++.++ .++.|.+.|.++ ....+..+. -......+.++|||..+++++..+.++.
T Consensus 273 ~vvfni~~--iea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 273 VVVFNIAR--IEEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred EEEEchHH--HHHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEE
Confidence 11111110 1144567874443 357899999886 223344443 4566789999999944555666699999
Q ss_pred EEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
+.|+...... +. . . -+.....+....--. .....+|.++|. .+.|--.|..|..|++.+
T Consensus 347 VIDv~k~k~~-~~-~-~----~~~~~~vvaevevGl-GPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDL-FD-G-K----IKPRDAVVAEPELGL-GPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhh-hh-c-c----CCccceEEEeeccCC-CcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 9999872110 00 0 0 000011222332222 345678999987 788888999999999876
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.0015 Score=55.78 Aligned_cols=199 Identities=11% Similarity=0.097 Sum_probs=111.1
Q ss_pred EeeeecCCC----CcceEEEeeeeeCC-----C-CEEEEEEeCCC---CCeEEEEeeecCCcceeeeeeCCCCCceEEEE
Q 018700 18 CISDVKADT----DHTSFLTGTLSLKE-----E-NEVHLLRLSSG---GTELICEGLFSHPNEIWDLSSCPFDQRIFSTV 84 (351)
Q Consensus 18 ~~~~~~~~~----~~~~~~~g~~~~~~-----~-~~i~~~~~~~~---~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~ 84 (351)
.+..+.... ....+++||..... . |.+.++++... ...+........+++|.+++-. +.+|+++
T Consensus 28 s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~- 104 (321)
T PF03178_consen 28 SLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA- 104 (321)
T ss_dssp EEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-
T ss_pred EEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-
Confidence 444444444 36788889865432 2 88999999984 2244444445567899999876 3346664
Q ss_pred eecCCcceEEEEEcccccCCCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc
Q 018700 85 FSTGESYGAAIWQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ 163 (351)
Q Consensus 85 ~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~ 163 (351)
..+.|.+|++.. .. ......+.. ...+.++... ++ .++++.....+.++..+............
T Consensus 105 ----~g~~l~v~~l~~-------~~~l~~~~~~~~-~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d 169 (321)
T PF03178_consen 105 ----VGNKLYVYDLDN-------SKTLLKKAFYDS-PFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARD 169 (321)
T ss_dssp ----ETTEEEEEEEET-------TSSEEEEEEE-B-SSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEE
T ss_pred ----ecCEEEEEEccC-------cccchhhheecc-eEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEec
Confidence 346899999983 12 233333322 2255666554 34 36676556778877665422222222222
Q ss_pred ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-------C-cCc---eeecce-eEEE---EcCC--CCCc----
Q 018700 164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-------G-KTN---SIEHAH-VRNV---DYDT--KKKH---- 222 (351)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~-~~~---~~~~~~-v~~~---~~~~--~~~~---- 222 (351)
.....++++.+-++++.++++..+|.+.++..... . .+. .+..+. |+++ .+.| .+..
T Consensus 170 --~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~ 247 (321)
T PF03178_consen 170 --YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNR 247 (321)
T ss_dssp --SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEE
T ss_pred --CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCccccc
Confidence 12336888888866678888899999999887631 1 111 112222 6666 6656 2221
Q ss_pred -EEEEecCCCeEEEE
Q 018700 223 -LLVTAADESGIHLW 236 (351)
Q Consensus 223 -~l~~~~~dg~i~i~ 236 (351)
.++.++.+|.|...
T Consensus 248 ~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 248 PQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEETTS-EEEE
T ss_pred ceEEEEecCCEEEEE
Confidence 36668888888744
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00056 Score=61.19 Aligned_cols=122 Identities=7% Similarity=-0.016 Sum_probs=84.2
Q ss_pred CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee-eeeeccccceeEEEecCCCCCcEEEEecC
Q 018700 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRHDKLVSIDE 142 (351)
Q Consensus 64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~d 142 (351)
|+..|.--++...+++++.+ +.-|.+.+|+-. ..+.. ....+..+.+..+..+++.. ++++++..
T Consensus 32 ~~~~v~lTc~dst~~~l~~G----sS~G~lyl~~R~---------~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~ 97 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMG----SSAGSVYLYNRH---------TGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTAS 97 (726)
T ss_pred CcceEEEEEeecCCceEEEe----cccceEEEEecC---------chhhhcccccCccceEEEEEecchhH-hhhhhcCC
Confidence 44455555666677888774 688899999976 22222 12222344455556666665 46666888
Q ss_pred CcEEEEEcCCCCCCccc-ccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018700 143 ENIFLWSLDCSNKNAQV-QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 199 (351)
|.|.++-++........ .......|...|++++|++++..+++|...|+|..-.+..
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 99999998874433332 3333445778999999999999999999999999888776
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.06 E-value=0.00077 Score=59.37 Aligned_cols=147 Identities=10% Similarity=0.062 Sum_probs=81.6
Q ss_pred eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018700 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (351)
Q Consensus 115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (351)
.+....-....+.++|+++. ++-+.||...|+.... . .... ......++|.+.++ +++-...+.|.+
T Consensus 27 ~lg~~~~~p~~ls~npngr~--v~V~g~geY~iyt~~~---~-r~k~------~G~g~~~vw~~~n~-yAv~~~~~~I~I 93 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRF--VLVCGDGEYEIYTALA---W-RNKA------FGSGLSFVWSSRNR-YAVLESSSTIKI 93 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSE--EEEEETTEEEEEETTT---T-EEEE------EEE-SEEEE-TSSE-EEEE-TTS-EEE
T ss_pred cCCCCCcCCeeEEECCCCCE--EEEEcCCEEEEEEccC---C-cccc------cCceeEEEEecCcc-EEEEECCCeEEE
Confidence 33344556789999999994 4446689999988331 1 1111 12566788998544 666666888999
Q ss_pred EEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC
Q 018700 195 WDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT 273 (351)
Q Consensus 195 wd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 273 (351)
+.--..+....+..+. +..+-. |. +|...+.+ .|.+||..+ ++.+.++.. .+|..+.|++++ .+++..+.
T Consensus 94 ~kn~~~~~~k~i~~~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g-~~val~t~ 164 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLPFSVEKIFG---GN-LLGVKSSD-FICFYDWET-GKLIRRIDV--SAVKYVIWSDDG-ELVALVTK 164 (443)
T ss_dssp EETTEE-TT-----SS-EEEEE----SS-SEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTS-SEEEEE-S
T ss_pred EEcCccccceEEcCCcccceEEc---Cc-EEEEECCC-CEEEEEhhH-cceeeEEec--CCCcEEEEECCC-CEEEEEeC
Confidence 6433334434454343 444433 76 56655544 899999997 677888763 348999999999 88888876
Q ss_pred CCeEEEEEcCC
Q 018700 274 DSTVNLWLVST 284 (351)
Q Consensus 274 dg~i~iwd~~~ 284 (351)
+ .+.+++...
T Consensus 165 ~-~i~il~~~~ 174 (443)
T PF04053_consen 165 D-SIYILKYNL 174 (443)
T ss_dssp --SEEEEEE-H
T ss_pred C-eEEEEEecc
Confidence 5 577777654
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.005 Score=53.76 Aligned_cols=198 Identities=17% Similarity=0.122 Sum_probs=127.2
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccC
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM 200 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 200 (351)
....+...+++..+.++......+...+.. ......... . + ......++.++.+..+++.. .++.|.+.|..+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~-~--g-~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~ 106 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLS-V--G-GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN 106 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeecc-C--C-CccccceeeCCCCCeEEEecCCCCeEEEEcCccc
Confidence 456678888887655555433344444433 111111000 0 0 02455778888888666554 5689999998887
Q ss_pred CcCceeecce-eEEEEcCCCCCcEEEEec--CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018700 201 GKTNSIEHAH-VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (351)
Q Consensus 201 ~~~~~~~~~~-v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 277 (351)
........+. ...++++|++.++.++-. .++++.+.|..+ .........-..+ ..++++|+|...+++-..++.|
T Consensus 107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeE
Confidence 7777777666 889999999986666655 478999999887 4455554433344 8999999994456666688999
Q ss_pred EEEEcCCCCCCCCCCcccccCCcccccccce-----eeccccceEEEEEeCCCCCceEEEeeeC--CeEEEeecCc
Q 018700 278 NLWLVSTSNHDELPSESLVESPNQRANSLLN-----SYSDYEDSVYGLAWSSREPWIFASLSYD--GRVVVESVKP 346 (351)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~vw~~~~ 346 (351)
.+.|... ..... ...... ....+.++|+|....++...+ +.+...|...
T Consensus 185 ~vi~~~~-------------------~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 185 SVIDTSG-------------------NSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred EEEeCCC-------------------cceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 9999776 22221 122222 346788999998555555444 5777776654
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=1.5e-05 Score=72.22 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=87.1
Q ss_pred eeEECCCCCcEEEee----cCCeEEEEEcccCCcCceeecc-eeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018700 173 GGAWDPHDVNAVAAT----CESSVQFWDLRSMGKTNSIEHA-HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (351)
-.+|+|..+.+++++ ..|.|.||- ++|++......+ |+.+++|+|..- +|+.|-+-|.+.+|...+ .+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHH-HHhhccccceeEEEecCC-ceeeee
Confidence 347999999888875 468888874 567765555433 388999999875 888898999999999876 444444
Q ss_pred eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
...|..+|..+.|+|+| ..++|+..-|.+.+|....
T Consensus 97 ~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 55799999999999999 9999999999999997763
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.01 E-value=0.0019 Score=56.11 Aligned_cols=273 Identities=11% Similarity=0.098 Sum_probs=127.3
Q ss_pred eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018700 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (351)
|..+.+..+...|++|. ..+++.++++......- .. -...-....+.+-. ..++.-.|-|+
T Consensus 4 v~~vs~a~~t~Elav~~----~~GeVv~~k~~~n~~~~--~~---~~~~~~~~~~~~~~----------~~~~~~~l~di 64 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGL----ESGEVVLFKFGKNQNYG--NR---EQPPDLDYNFRRFS----------LNNSPGKLTDI 64 (395)
T ss_dssp EEEEEEETTTTEEEEEE----TTS-EEEEEEEE-----------------------S------------GGGSS-SEEE-
T ss_pred EEEEEecCCCceEEEEc----cCCcEEEEEcccCCCCC--cc---CCCcccCccccccc----------ccCCCcceEEe
Confidence 55666777888888886 46888888887643211 00 00111122222210 11222234444
Q ss_pred ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc---ccCcccceeeeE
Q 018700 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGA 175 (351)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~ 175 (351)
...........+.+..-+....++|++++.|.-|- ++++..+|.+.|.|++.+.-........ .......++++.
T Consensus 65 ~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGF--vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 65 SDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGF--VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSE--EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred hhhCCcccccccCchhheeccCCcEeEEecCCCcE--EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 43222222234566666777789999999986664 6677889999999998543222211111 111233577777
Q ss_pred EC-----CCC---CcEEEeecCCeEEEEEccc-CCcCceee-------c-ceeEEE-EcCCC-CC---------------
Q 018700 176 WD-----PHD---VNAVAATCESSVQFWDLRS-MGKTNSIE-------H-AHVRNV-DYDTK-KK--------------- 221 (351)
Q Consensus 176 ~~-----~~~---~~l~~~~~d~~i~iwd~~~-~~~~~~~~-------~-~~v~~~-~~~~~-~~--------------- 221 (351)
|. .|+ -.+++|++.|.+.+|.+.- ..-..... . +.+..+ .++.+ |.
T Consensus 143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 74 122 3588889999999998752 11111111 0 112211 12111 00
Q ss_pred ---cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec-----CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018700 222 ---HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN-----PEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (351)
Q Consensus 222 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 293 (351)
.-++....+..++++...+.+...+.+ ...-....+.+- ..+ ..|++-..+|.|++|.+..
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~--------- 291 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPS--------- 291 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT---------
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCC---------
Confidence 013334446789999988633333333 222233344442 244 7888889999999999987
Q ss_pred ccccCCcccccccceeeccc----cceEEEEEeCCCCCceEEEee
Q 018700 294 SLVESPNQRANSLLNSYSDY----EDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~ 334 (351)
.+.+...+-. ...+....++++|. +++-.+
T Consensus 292 ----------Lkei~~~~l~~~~d~~~~~~ssis~~Gd-i~~~~g 325 (395)
T PF08596_consen 292 ----------LKEIKSVSLPPPLDSRRLSSSSISRNGD-IFYWTG 325 (395)
T ss_dssp ------------EEEEEE-SS---HHHHTT-EE-TTS--EEEE-S
T ss_pred ----------chHhhcccCCCccccccccccEECCCCC-EEEEeC
Confidence 4555444332 22344566788887 454443
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.94 E-value=0.0034 Score=52.31 Aligned_cols=199 Identities=14% Similarity=0.177 Sum_probs=111.3
Q ss_pred eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018700 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148 (351)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw 148 (351)
..++++.++++++..-+ .-...|.|-|+. ..+.+..+... . |.-.-|.++.-+.+-+.||.+.-.
T Consensus 98 ~~~~ls~dgk~~~V~N~--TPa~SVtVVDl~---------~~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNF--TPATSVTVVDLA---------AKKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp GGEEE-TTSSEEEEEEE--SSSEEEEEEETT---------TTEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEEE
T ss_pred cceEEccCCcEEEEEcc--CCCCeEEEEECC---------CCceeeeecCC--C--EEEEEecCCCceEEEecCCceEEE
Confidence 34566777777666432 223467777776 44555544321 1 222334443324555889999999
Q ss_pred EcCCCCCCcccccccccCcccc-eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eee------------cceeEE
Q 018700 149 SLDCSNKNAQVQSKQSSGMLHY-LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIE------------HAHVRN 213 (351)
Q Consensus 149 d~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~------------~~~v~~ 213 (351)
.+....+........+.....+ +..-++...+..++..+.+|.|+--|+....... .+. ++.-.-
T Consensus 163 ~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~ 242 (342)
T PF06433_consen 163 TLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL 242 (342)
T ss_dssp EETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred EECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence 9985554432221111111112 2233444455566667888999888887554211 111 001455
Q ss_pred EEcCCCCCcEEEEe--cCCC-------eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe-eCCCeEEEEEcC
Q 018700 214 VDYDTKKKHLLVTA--ADES-------GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVS 283 (351)
Q Consensus 214 ~~~~~~~~~~l~~~--~~dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~ 283 (351)
+++++....+++.- +.++ .|.+||+.+ ++.+.++.. ..++.+|..+.+...+|++. ..++.+.+||..
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 77776555233321 1122 488888887 666777763 45788999998886677655 458999999999
Q ss_pred C
Q 018700 284 T 284 (351)
Q Consensus 284 ~ 284 (351)
+
T Consensus 321 t 321 (342)
T PF06433_consen 321 T 321 (342)
T ss_dssp T
T ss_pred C
Confidence 9
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00022 Score=61.68 Aligned_cols=143 Identities=8% Similarity=0.097 Sum_probs=99.0
Q ss_pred CCCcEEE-eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcE------EEEecCCCeEEEEecccCCc-ceeEee
Q 018700 179 HDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL------LVTAADESGIHLWDLRMLKA-PIQELP 249 (351)
Q Consensus 179 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~------l~~~~~dg~i~i~d~~~~~~-~~~~~~ 249 (351)
+.+.|+. +.....++-.|++.|+.+....... |+-+.+.|+.+.- -+.|-+|..|.-||+|-.+. .+...+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3344443 4456788899999999888887555 8888888875410 13377888999999986443 233333
Q ss_pred CCC----CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018700 250 GHT----HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (351)
Q Consensus 250 ~~~----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (351)
+|. ....|.+-..+| +++.|+.+|-||+||.-. ...-..+++-..+|..|..+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~-------------------~~AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIG-------------------RRAKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred ccccccccccceeeecCCc--eEEEeecCCcEEeehhhh-------------------hhhhhcccccCCceeeEEeecc
Confidence 333 334555555554 999999999999999854 3444456777889999999999
Q ss_pred CCceEEEeeeCCeEEEeec
Q 018700 326 EPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 326 ~~~~l~s~~~dg~v~vw~~ 344 (351)
|.++|+|| +..+.+-++
T Consensus 483 GKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 483 GKWILATC--KTYLLLIDT 499 (644)
T ss_pred CcEEEEec--ccEEEEEEE
Confidence 99877766 456665554
No 352
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=0.0062 Score=49.25 Aligned_cols=172 Identities=13% Similarity=0.240 Sum_probs=110.6
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEecCCCCCcEEEE
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVS 139 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~ 139 (351)
+.+-...|.++.|+|+.+.|+++. ....-.||--. .++.+.++.-. -...-.+.+..++. ++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~----n~p~~iVElt~---------~GdlirtiPL~g~~DpE~Ieyig~n~--fvi~ 145 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVT----NKPAAIVELTK---------EGDLIRTIPLTGFSDPETIEYIGGNQ--FVIV 145 (316)
T ss_pred cccccccccceeeCCCcceEEEec----CCCceEEEEec---------CCceEEEecccccCChhHeEEecCCE--EEEE
Confidence 445566699999999999999983 44444455433 46666665321 22334677877777 5555
Q ss_pred -ecCCcEEEEEcCCCCCCccccc-----ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee------
Q 018700 140 -IDEENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE------ 207 (351)
Q Consensus 140 -~~d~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------ 207 (351)
-.+..+.++.++.......... ...........+++|.|.+..|+++-...-+.||............
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 5678888888775432221111 1111114468899999999999999888888887766433111111
Q ss_pred c------ceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018700 208 H------AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 208 ~------~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
. ..+..+.|++....+++-+.+++.+.-.|.. +.++..+.
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~ls 271 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLS 271 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEE
Confidence 0 0178889998777788889999988888876 44444443
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=3e-05 Score=59.68 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=91.4
Q ss_pred EEEeecCCeEEEEEcccCCcCceeecceeEEE-EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE-Ee
Q 018700 183 AVAATCESSVQFWDLRSMGKTNSIEHAHVRNV-DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV-CC 260 (351)
Q Consensus 183 l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~ 260 (351)
+...+.++.|+-++++..+....-..- +.+. ....-+. -+++|+.+|.|++|.....+.....+..-...|.++ .-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~-~~e~~~v~~~~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERF-IDEGQRVVTASA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhh-hhcceeecccCc-eEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 555677888888887754332222211 1111 1111223 588899999999999875443333232223333332 22
Q ss_pred cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEeCCCCCceEEEe--eeCC
Q 018700 261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASL--SYDG 337 (351)
Q Consensus 261 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg 337 (351)
-.++ .+.+++..||.|+.|++.. .+.+.....|. .++..+..+..++ +++.+ |.|.
T Consensus 111 ~~~~-~~~c~~~~dg~ir~~n~~p-------------------~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~ 169 (238)
T KOG2444|consen 111 GRDS-SLGCVGAQDGRIRACNIKP-------------------NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDR 169 (238)
T ss_pred cccc-ceeEEeccCCceeeecccc-------------------CceeeeeccccCCCcceeEEecCCc-eEEeeccccch
Confidence 2333 5899999999999999987 66666666676 5666666666666 67777 8899
Q ss_pred eEEEeecCccc
Q 018700 338 RVVVESVKPFL 348 (351)
Q Consensus 338 ~v~vw~~~~~~ 348 (351)
.++.|++.++.
T Consensus 170 ~~k~W~ve~~~ 180 (238)
T KOG2444|consen 170 VLKKWNVEKIK 180 (238)
T ss_pred hhhhcchhhhh
Confidence 99999998754
No 354
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.86 E-value=0.0032 Score=55.43 Aligned_cols=182 Identities=12% Similarity=-0.060 Sum_probs=99.1
Q ss_pred CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeE-EEecCCCCCcEEEEecCCcEEEEEcCCCCC
Q 018700 77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSGRHDKLVSIDEENIFLWSLDCSNK 155 (351)
Q Consensus 77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 155 (351)
+..++++ +.++.+.-+|.. +++.+=+..... .+.+ ... .++. +++...++.+.-+|..+++.
T Consensus 120 ~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~~-~~~ssP~v-~~~~--v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 120 GGKVYIG----SEKGQVYALNAE---------DGEVAWQTKVAG-EALSRPVV-SDGL--VLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred CCEEEEE----cCCCEEEEEECC---------CCCCcccccCCC-ceecCCEE-ECCE--EEEECCCCEEEEEEccCCCE
Confidence 4455553 577888888876 344433332221 1111 111 1333 56666688999999988776
Q ss_pred CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---------eEEEEcCC--CCCcEE
Q 018700 156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLL 224 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l 224 (351)
.................+-.. .+..++.++.++.+..+|..+++......... ...+.-+| .+. .+
T Consensus 183 ~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~v 259 (394)
T PRK11138 183 KWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VV 259 (394)
T ss_pred eeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EE
Confidence 554432210000000001111 12357777888999999999988766543211 11111222 233 45
Q ss_pred EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+.++.+|.+..+|..+ ++.+-.... .....+.. .+ ..++.++.+|.+..+|..+
T Consensus 260 y~~~~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 260 YALAYNGNLVALDLRS-GQIVWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred EEEEcCCeEEEEECCC-CCEEEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECCC
Confidence 6677889999999987 544433321 11112222 34 5677778899999999987
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.0062 Score=51.99 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=82.4
Q ss_pred CcEEEEEcCCC-CCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeec-ce--eEEEEcC
Q 018700 143 ENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEH-AH--VRNVDYD 217 (351)
Q Consensus 143 ~~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-~~--v~~~~~~ 217 (351)
|.|.++++... ....++..........+|++++-- +..|+++. ++.|.+|++...+ ....-.. .. +.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999999973 111122211112234478888655 33444443 5899999999877 2222221 11 6666654
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+. +++.|.....+.++..+.....+..+. ....+++++.|-+++ ..++.+..+|.+.++....
T Consensus 139 --~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 --KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred --cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence 43 688888888888886654233233332 345678899998787 6999999999999998864
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.81 E-value=0.013 Score=51.95 Aligned_cols=198 Identities=11% Similarity=0.062 Sum_probs=105.0
Q ss_pred ceeEEEecCCCCCcEEEEecCC----cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---------
Q 018700 122 KINCVLWWSSGRHDKLVSIDEE----NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--------- 188 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------- 188 (351)
.+....++|++++++++-+..| .++++|+.++......+... ....+.|.++++.++....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccC
Confidence 3446789999997444434444 49999999763332222211 2234999999888776653
Q ss_pred --CCeEEEEEcccCCcC--ceeecce----eEEEEcCCCCCcEEEEecCC---CeEEEEecccC---CcceeEeeCCCCc
Q 018700 189 --ESSVQFWDLRSMGKT--NSIEHAH----VRNVDYDTKKKHLLVTAADE---SGIHLWDLRML---KAPIQELPGHTHW 254 (351)
Q Consensus 189 --d~~i~iwd~~~~~~~--~~~~~~~----v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~---~~~~~~~~~~~~~ 254 (351)
...|+.|.+.+.... ..+.... ...+..+++++++++..... ..+++.|+... ......+......
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~ 278 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG 278 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence 234777887765443 2333222 56788999999766654433 45888888752 2234444433434
Q ss_pred ee-EEEecCCCCCeEEEeeC---CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc--eEEEEEeCCCCCc
Q 018700 255 TW-AVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPW 328 (351)
Q Consensus 255 v~-~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 328 (351)
+. .+... .+ .+++.... .+.|...++..... ......+..+.. .+..+... +.+
T Consensus 279 ~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~----------------~~~~~~l~~~~~~~~l~~~~~~--~~~ 338 (414)
T PF02897_consen 279 VEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSP----------------AEWWTVLIPEDEDVSLEDVSLF--KDY 338 (414)
T ss_dssp -EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSG----------------GGEEEEEE--SSSEEEEEEEEE--TTE
T ss_pred eEEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccc----------------ccceeEEcCCCCceeEEEEEEE--CCE
Confidence 43 33333 33 34443322 44666666665110 011113444444 45555543 444
Q ss_pred eEEEeeeCCe--EEEeecC
Q 018700 329 IFASLSYDGR--VVVESVK 345 (351)
Q Consensus 329 ~l~s~~~dg~--v~vw~~~ 345 (351)
+++..-.++. |+++++.
T Consensus 339 Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 339 LVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEETTEEEEEEEETT
T ss_pred EEEEEEECCccEEEEEECC
Confidence 6666666654 6677766
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=0.0016 Score=51.44 Aligned_cols=125 Identities=7% Similarity=-0.044 Sum_probs=83.6
Q ss_pred cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec
Q 018700 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH 208 (351)
Q Consensus 129 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 208 (351)
.++.+.+++.++..+.+.--|..+++...+..... .+.+-+.- -++.++.|+..|.+++.+..+|.....+..
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 34555556666777888888888766555444332 33332222 367799999999999999999988777764
Q ss_pred ce-e-EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecC
Q 018700 209 AH-V-RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (351)
Q Consensus 209 ~~-v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 262 (351)
.. | ......+++. ++..|+.|++.+..|.++ ...+...+.-.+...+-+..|
T Consensus 92 ~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 92 LETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred hhhhccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecccCCceeccceecC
Confidence 44 2 2334566777 899999999999999997 546665553333333444455
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.79 E-value=6.2e-05 Score=40.90 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=33.5
Q ss_pred cccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
.++...+..|...|.++.|++++. ++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 345666778888999999999887 899999999999996
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00012 Score=64.53 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=73.0
Q ss_pred ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce-eE-EEEcCCCCCcEEEEecCCCeEEEEecccCCccee
Q 018700 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VR-NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ 246 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~-v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (351)
.+.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++. ++. +. +++|.|||+ ++++|-.||+|++.|..+.. .+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~-~l~ 98 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG-RLV 98 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC-cee
Confidence 57788999999999999999999999888 67777777 333 55 999999998 99999999999999999844 343
Q ss_pred E-eeCCCCceeEEEecC
Q 018700 247 E-LPGHTHWTWAVCCNP 262 (351)
Q Consensus 247 ~-~~~~~~~v~~~~~~~ 262 (351)
. ...-...|.++-|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 3 223456788888874
No 360
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.75 E-value=0.022 Score=49.11 Aligned_cols=233 Identities=11% Similarity=0.078 Sum_probs=101.9
Q ss_pred CCEEEEEEeCCCCC---eEEEEeeecCC-cceeeeeeC-----------CCCCceEEEEeecCCcceEEEEEcccccCCC
Q 018700 41 ENEVHLLRLSSGGT---ELICEGLFSHP-NEIWDLSSC-----------PFDQRIFSTVFSTGESYGAAIWQIPELYGQL 105 (351)
Q Consensus 41 ~~~i~~~~~~~~~~---~~~~~~~~~h~-~~v~~i~~~-----------~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~ 105 (351)
...+..+++++++. +++...-..+. ++.+..-|+ .+.++|++- +=....|.|.|+.....
T Consensus 36 pD~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~P---gL~SsrIyviD~~~dPr-- 110 (461)
T PF05694_consen 36 PDYLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILP---GLRSSRIYVIDTKTDPR-- 110 (461)
T ss_dssp --EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEE---BTTT--EEEEE--S-TT--
T ss_pred CCeEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEee---eeccCcEEEEECCCCCC--
Confidence 45667777776543 34434333443 456655554 245567775 34677899999874321
Q ss_pred CCCcceeeeeeec---cc----cceeEEEecCCCCCcEEEE-ec-C----CcEEEEEcCCCCCCcccccccccCccccee
Q 018700 106 NSPQLERIAALDA---HV----GKINCVLWWSSGRHDKLVS-ID-E----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (351)
Q Consensus 106 ~~~~~~~~~~~~~---h~----~~v~~~~~~~~~~~~~~~~-~~-d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (351)
..+..+.++. +. .....+..-|+|. +++++ +. + |-+.++|-++.+....-.. ..+....-+
T Consensus 111 ---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~--~~~~~~~gY 184 (461)
T PF05694_consen 111 ---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEK--DRGPQPFGY 184 (461)
T ss_dssp ---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--S--B-TT-----
T ss_pred ---CCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceecc--CCCCCCCCC
Confidence 2233344432 11 1222333447787 35554 32 2 4566777664322111111 111223567
Q ss_pred eeEECCCCCcEEEeec--------------------CCeEEEEEcccCCcCceeecce----eEEEEc--CCCCCcEEEE
Q 018700 173 GGAWDPHDVNAVAATC--------------------ESSVQFWDLRSMGKTNSIEHAH----VRNVDY--DTKKKHLLVT 226 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~----v~~~~~--~~~~~~~l~~ 226 (351)
++-|.|..+.++++.. ..++++||+.+.+.++++..+. +..+.| .|+..+-++.
T Consensus 185 Dfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 185 DFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp -EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEE
T ss_pred CeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEE
Confidence 7788887777776642 3589999999999998888653 555555 5666655555
Q ss_pred ecCCCeEEEEecccCCc----ceeEeeC-----C------------CCceeEEEecCCCCCeEE-EeeCCCeEEEEEcCC
Q 018700 227 AADESGIHLWDLRMLKA----PIQELPG-----H------------THWTWAVCCNPEYDGFIL-SAGTDSTVNLWLVST 284 (351)
Q Consensus 227 ~~~dg~i~i~d~~~~~~----~~~~~~~-----~------------~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 284 (351)
+.-..+|..|-....+. .+..+.. - ..-|+.|..|.|. ++|. ++-.+|.|+.||+..
T Consensus 265 ~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 265 CALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SS
T ss_pred EeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCC
Confidence 54555555554422121 1222211 0 2347899999999 6665 555699999999987
Q ss_pred C
Q 018700 285 S 285 (351)
Q Consensus 285 ~ 285 (351)
.
T Consensus 344 P 344 (461)
T PF05694_consen 344 P 344 (461)
T ss_dssp T
T ss_pred C
Confidence 3
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.75 E-value=0.018 Score=47.96 Aligned_cols=227 Identities=11% Similarity=0.105 Sum_probs=120.1
Q ss_pred CCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC
Q 018700 25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ 104 (351)
Q Consensus 25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~ 104 (351)
.....++++|+. +| ++++++.......... +...|..+...|+-+.+++. .|+.+.++++......
T Consensus 4 ~~~~~~L~vGt~----~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~~~~~llvL-----sd~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 4 DSWGDRLLVGTE----DG-LYVYDLSDPSKPTRIL----KLSSITQLSVLPELNLLLVL-----SDGQLYVYDLDSLEPV 69 (275)
T ss_pred ccCCCEEEEEEC----CC-EEEEEecCCccceeEe----ecceEEEEEEecccCEEEEE-----cCCccEEEEchhhccc
Confidence 346788999963 34 8888883333222222 23349999999988888776 4699999999843221
Q ss_pred CCCCcce-e-----eeeeeccccceeEEE--ecCCCCCcEEEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeee
Q 018700 105 LNSPQLE-R-----IAALDAHVGKINCVL--WWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGG 174 (351)
Q Consensus 105 ~~~~~~~-~-----~~~~~~h~~~v~~~~--~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~ 174 (351)
....... . ...+ .....+...+ -...+.. .++......|.+|......... ....... ...+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~-~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i 144 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSR-RLCVAVKKKILIYEWNDPRNSFSKLLKEISL---PDPPSSI 144 (275)
T ss_pred cccccccccccccccccc-cccCCeeEEeeccccccce-EEEEEECCEEEEEEEECCcccccceeEEEEc---CCCcEEE
Confidence 1100000 0 0011 1222344433 1223332 4444445699999887532221 1111111 2378899
Q ss_pred EECCCCCcEEEeecCCeEEEEEcccCCcCceeec-------------ce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (351)
+|. ++.++.+..+ ...+.|+.++.....+.. .+ +..+... ++. +|++- |..-.+.|..
T Consensus 145 ~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~~--~~~g~fv~~~- 216 (275)
T PF00780_consen 145 AFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLCY--DNIGVFVNKN- 216 (275)
T ss_pred EEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEEe--cceEEEEcCC-
Confidence 998 4566666644 477889886654322210 01 3333333 344 45432 2333344443
Q ss_pred CCccee--EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 241 LKAPIQ--ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 241 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+.+.+ .+.- ......+++.. .+|+.... +.|.||++.+
T Consensus 217 -G~~~r~~~i~W-~~~p~~~~~~~---pyli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 217 -GEPSRKSTIQW-SSAPQSVAYSS---PYLIAFSS-NSIEVRSLET 256 (275)
T ss_pred -CCcCcccEEEc-CCchhEEEEEC---CEEEEECC-CEEEEEECcC
Confidence 33332 3332 33556666643 56666665 4599999999
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.73 E-value=0.0055 Score=42.08 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=66.3
Q ss_pred EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018700 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (351)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 293 (351)
+.|..+|.+-|++|++|..||+|+-. ..+.++.. ...|+.++-... ..++-+-.+|+|-+|+...
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~--------- 72 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ--------- 72 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc---------
Confidence 34455666789999999999999954 36677664 456777766554 4688889999999998754
Q ss_pred ccccCCcccccccceeeccccceEEEEEe---CCCCCceEEEeeeCCeEE
Q 018700 294 SLVESPNQRANSLLNSYSDYEDSVYGLAW---SSREPWIFASLSYDGRVV 340 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~dg~v~ 340 (351)
. +...+.... +.++.+ ..+|..-|++|-.+|.|-
T Consensus 73 -----------R-lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -----------R-LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------e-eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 222222222 444443 345554688888888774
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00021 Score=62.96 Aligned_cols=70 Identities=16% Similarity=0.304 Sum_probs=63.2
Q ss_pred eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee-EEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW-AVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+.-+.|+|.-+ ++|.+..+|.|-+..+. .+.+.++..|...++ +++|.||| .+|+.|-.||+|++.|+..
T Consensus 23 i~~~ewnP~~d-LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 23 IKRIEWNPKMD-LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred eEEEEEcCccc-hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccC
Confidence 88899999998 99999999999999887 445778877777777 99999999 9999999999999999998
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00036 Score=62.34 Aligned_cols=113 Identities=10% Similarity=0.021 Sum_probs=84.5
Q ss_pred ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee
Q 018700 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ 246 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (351)
.+.--+++..+++++.|+.-|.+++|+-..++....-. ..+ +..+..+++.. ++|.|+..|.|.++.+.....+-.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcc
Confidence 34444566678999999999999999987665433222 133 66677787775 889999999999999876322211
Q ss_pred Ee-----eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 247 EL-----PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 247 ~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+ +.|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 11 1367889999999999 9999999999998877765
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=0.00012 Score=39.74 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=33.5
Q ss_pred cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018700 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281 (351)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 281 (351)
++...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3566677888999999999998 8999999999999996
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.0035 Score=43.00 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=67.8
Q ss_pred eeEEEe---cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018700 123 INCVLW---WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (351)
Q Consensus 123 v~~~~~---~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 199 (351)
|+++++ ..+|...+++++.|..|++|+-.. ....+.. ...+.++.-... ..++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE------TDKVTSLCSLGG-GRFAYALANGTVGVYDRS- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec------ccceEEEEEcCC-CEEEEEecCCEEEEEeCc-
Confidence 444444 446666799999999999998662 2333332 227888877664 568888899999999753
Q ss_pred CCcCceeecce-eEEEE---cCCCCCcEEEEecCCCeEEE
Q 018700 200 MGKTNSIEHAH-VRNVD---YDTKKKHLLVTAADESGIHL 235 (351)
Q Consensus 200 ~~~~~~~~~~~-v~~~~---~~~~~~~~l~~~~~dg~i~i 235 (351)
+.+..++..+ +.+++ ++.+|..-|++|-.+|.|-+
T Consensus 72 -~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 -QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3455555444 44443 34455556888999988743
No 367
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.60 E-value=0.0024 Score=56.38 Aligned_cols=151 Identities=13% Similarity=0.233 Sum_probs=94.1
Q ss_pred ccceeEEEecCCCCCcEEEE--ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC----CCcEEEeecCCeEE
Q 018700 120 VGKINCVLWWSSGRHDKLVS--IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAATCESSVQ 193 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~ 193 (351)
-.++..++|. ||+.++++. -.+|.+++=|-.. + +.-+.|.++.|.|- ...+++.-....|.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~v-------i-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSKV-------I-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCccE-------e-----eccceeeeeeecCcccCCCCceEEEeccceEE
Confidence 4578889995 455555555 2355555443331 1 11126899999885 45688888899999
Q ss_pred EEEcccC-----CcCce----eecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018700 194 FWDLRSM-----GKTNS----IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (351)
Q Consensus 194 iwd~~~~-----~~~~~----~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 261 (351)
+|.+... +.+.. +...- ...+.|+|... +|++-.....-.+++++.....++.=-...+.|.|.+|.
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT 164 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWT 164 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEec
Confidence 9998621 22111 11111 66789999998 666555444445677765443333322356789999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEcCC
Q 018700 262 PEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 262 ~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+||++++++.+..=.-++||-..
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCch
Confidence 99966666666554567887543
No 368
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.53 E-value=0.0068 Score=48.00 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=73.2
Q ss_pred CCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018700 180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV 258 (351)
Q Consensus 180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 258 (351)
..+++.|+..+.+.--|..+|+.......+. +.+-+.- -|+ +++.|+..|.+++.+.++ +.....+..-..-=...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECC-EEEEEEccCcEEEEEecc-hhheeeeeehhhhccce
Confidence 3456778888999989999988766554333 3332222 355 688899999999999998 54566655433222344
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
...+++ .++..|+.|+..+..|.++
T Consensus 100 ~~d~~~-glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 100 QCDFDG-GLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred EEcCCC-ceEEEecCCCcEEEecccc
Confidence 567888 8999999999999999998
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.52 E-value=0.021 Score=49.84 Aligned_cols=205 Identities=8% Similarity=0.082 Sum_probs=107.5
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCc------cc-------------------cccc-------------
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA------QV-------------------QSKQ------------- 163 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~------~~-------------------~~~~------------- 163 (351)
.|+.+.|.++... ++++...|.|.||.....+... .. ....
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5788889888663 7777778999888765432111 00 0000
Q ss_pred ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--c-----ce---eEEEEcC-----CCC--CcEEEE
Q 018700 164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--H-----AH---VRNVDYD-----TKK--KHLLVT 226 (351)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~-----~~---v~~~~~~-----~~~--~~~l~~ 226 (351)
......+|++++.+ |-.++++|..+|.+.|.|+|....+..-. . .. +.++.|. .|+ .-++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 00113467888876 56678889999999999998765443311 1 01 7777774 222 136788
Q ss_pred ecCCCeEEEEeccc-C-Cc----ceeEeeCCCCceeEEE-ecCC-C-------------------CCeEEEeeCCCeEEE
Q 018700 227 AADESGIHLWDLRM-L-KA----PIQELPGHTHWTWAVC-CNPE-Y-------------------DGFILSAGTDSTVNL 279 (351)
Q Consensus 227 ~~~dg~i~i~d~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~-~-------------------~~~l~s~~~dg~i~i 279 (351)
|.+.|.+.+|.+-- . +. .......+.++|..+. |+.+ | +.+++.+ .+..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEE
Confidence 99999999998752 1 11 1111224556665554 3221 1 1244443 3567999
Q ss_pred EEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC----CCCCceEEEeeeCCeEEEeecCccc
Q 018700 280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS----SREPWIFASLSYDGRVVVESVKPFL 348 (351)
Q Consensus 280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~dg~v~vw~~~~~~ 348 (351)
+.... .+..............+.+- ..+...|++-..+|.|+++.++...
T Consensus 240 ~~~~~-------------------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 240 FKPPK-------------------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp E-TT----------------------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EeCCC-------------------CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 98876 33333222222223334442 1223378888899999999998754
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.057 Score=47.68 Aligned_cols=183 Identities=8% Similarity=0.059 Sum_probs=91.4
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v 145 (351)
+.|.++.|..+...++. ..||.+++||+.... .. .-...+.........+....+..+|- ++.+ .++.+
T Consensus 81 ~~iv~~~wt~~e~LvvV-----~~dG~v~vy~~~G~~-~f--sl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt-~~~~~ 149 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVV-----QSDGTVRVYDLFGEF-QF--SLGEEIEEEKVLECRIFAIWFYKNGI--VVLT-GNNRF 149 (410)
T ss_pred CCEEEEEECCCCeEEEE-----EcCCEEEEEeCCCce-ee--chhhhccccCcccccccccccCCCCE--EEEC-CCCeE
Confidence 89999999986555544 389999999985211 00 00111111122222333333333442 3333 34444
Q ss_pred EEEEcCCCC-CCccccccc---ccCcc-cceee-eEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-ceeEEEEcCC
Q 018700 146 FLWSLDCSN-KNAQVQSKQ---SSGML-HYLSG-GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AHVRNVDYDT 218 (351)
Q Consensus 146 ~iwd~~~~~-~~~~~~~~~---~~~~~-~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~v~~~~~~~ 218 (351)
.+..-.... ......... ...+. ..... ..++.+....+....++.+.+.+-...+. +.. +++..+++||
T Consensus 150 ~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSp 226 (410)
T PF04841_consen 150 YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSP 226 (410)
T ss_pred EEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECC
Confidence 443322111 111110000 00000 01111 23444455555555566676555333212 222 2399999999
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcceeEeeCC-CCceeEEEecCCC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-THWTWAVCCNPEY 264 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 264 (351)
+++ .++.-..+|.+.+....- .+.+.++... ......+.|.-+.
T Consensus 227 ng~-~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 227 NGK-FIALFTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCC-EEEEEECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECCC
Confidence 999 677778889999988654 5555555533 3455667776554
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.47 E-value=0.036 Score=51.12 Aligned_cols=152 Identities=12% Similarity=0.120 Sum_probs=84.1
Q ss_pred cceeEEEecCCCCCcEEEEe-----cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-------
Q 018700 121 GKINCVLWWSSGRHDKLVSI-----DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------- 188 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------- 188 (351)
..+...+.+|+|+.+.++.. .|..-.||-...+.....+.... ....-.|+|++..+.+...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 46778899999996433332 24333444333223232222211 3677799999887766642
Q ss_pred -----CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc--CCc-ce---eEee-CCCCce
Q 018700 189 -----ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKA-PI---QELP-GHTHWT 255 (351)
Q Consensus 189 -----d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-~~---~~~~-~~~~~v 255 (351)
.+.+.+.+++.++... .... |..+.|+|||..+++.. ++.|++--+.. .+. .+ ..+. .-...+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 2344444555544433 2122 99999999999554444 46776622211 121 11 1122 223346
Q ss_pred eEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 256 WAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
..+.|.+++ .++ .+..++.-.+|.+..
T Consensus 500 ~~l~W~~~~-~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 500 VSLDWRTGD-SLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred ccceEecCC-EEE-EEecCCCCceEEEec
Confidence 889999998 544 555555555676654
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.024 Score=47.51 Aligned_cols=196 Identities=12% Similarity=0.097 Sum_probs=100.9
Q ss_pred EEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce
Q 018700 126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS 205 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 205 (351)
-.|.++...++.+--..+.|.-|+..++........ + .+.++..-..+..|+++. ..+.+++.+++.....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p----~---~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~ 100 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP----G---GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITL 100 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC----C---CcccceeecCCCeEEEEc--cccEEEeccCCceeEE
Confidence 347787775444445678888898875432221111 1 233333332333344432 3355666655444222
Q ss_pred ee---cce----eEEEEcCCCCCcEEEEec-----C-----CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018700 206 IE---HAH----VRNVDYDTKKKHLLVTAA-----D-----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI 268 (351)
Q Consensus 206 ~~---~~~----v~~~~~~~~~~~~l~~~~-----~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 268 (351)
+. .+. .+.+...|+|..++-+-+ . -|.++.+|. . +..++.+..+-..-+.|+|||++..++
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCCEEE
Confidence 21 111 778999999983333222 1 133555553 2 445555555566678999999994444
Q ss_pred EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC-eEEEeecC
Q 018700 269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG-RVVVESVK 345 (351)
Q Consensus 269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~v~vw~~~ 345 (351)
++=+..+.|.-|++........ .......+.......-.++...+|. +.+++..+| .|.+|+.+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~------------~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIG------------GRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEeCCCCeEEEEecCcccCccC------------CcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC
Confidence 4555567888887762000000 0011111222334455666667776 454443333 67777655
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0081 Score=52.41 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=88.3
Q ss_pred cEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-------cEEEeecCCeEEEEEcccCCc-Cce
Q 018700 135 DKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-------NAVAATCESSVQFWDLRSMGK-TNS 205 (351)
Q Consensus 135 ~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~-~~~ 205 (351)
+++.. .....++-.|++.++....-.... .|.-+.+.|+.+ .-+.|-.++.|.-||+|-... ...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 34444 344556666776544332221111 355555666543 234566788999999985332 111
Q ss_pred eecce-------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018700 206 IEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278 (351)
Q Consensus 206 ~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 278 (351)
....+ ..|.+-..+| .+++|+.+|.||+||. ...+.-..+.+...+|..|..+.+| .+|+..+ +..+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~tyLl 495 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG-KWILATC-KTYLL 495 (644)
T ss_pred eeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-cEEEEec-ccEEE
Confidence 11122 7788888787 5888999999999997 3345556677888999999999999 5555433 55777
Q ss_pred EEEcCC
Q 018700 279 LWLVST 284 (351)
Q Consensus 279 iwd~~~ 284 (351)
+-++..
T Consensus 496 Li~t~~ 501 (644)
T KOG2395|consen 496 LIDTLI 501 (644)
T ss_pred EEEEec
Confidence 777764
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.021 Score=52.66 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=99.8
Q ss_pred cceeeeeeCCCCCceEEEEee--cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--
Q 018700 66 NEIWDLSSCPFDQRIFSTVFS--TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID-- 141 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-- 141 (351)
..+.+.+.+|+++.++.+... ...|..-.||-... .........+. ....-.|+|+|..+.++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--------gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--------GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--------CCcceeeecCC--CCCCceECCCCCceEEEecCcc
Confidence 467889999999998877411 11244445554431 11111112222 37778999998854433211
Q ss_pred ---------CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE---EEcccCCc-C---ce
Q 018700 142 ---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF---WDLRSMGK-T---NS 205 (351)
Q Consensus 142 ---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~ 205 (351)
.+.+.+.+++.+.... .....|..+.|+|||..++... ++.|++ -....+.. + ..
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~--------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~ 490 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS--------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE 490 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh--------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE
Confidence 1233333443221111 1123799999999999988766 467776 34334431 1 11
Q ss_pred eec--ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--CCCceeEEEecCCCCCeEEEeeCCCeE
Q 018700 206 IEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTV 277 (351)
Q Consensus 206 ~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i 277 (351)
+.. .. +.++.|.+++. ++ ++..++...+|.+.-.+.....+.. ...++..|+=++. .++....++.+
T Consensus 491 l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~---~iyv~~~~g~~ 562 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS---TVYVTDARAVL 562 (591)
T ss_pred eecccCCccccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc---eEEEEcCCceE
Confidence 111 11 57899999997 44 4555554445554432322222222 2456677766652 34444556633
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.00065 Score=52.55 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=84.0
Q ss_pred cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce--e
Q 018700 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH--V 211 (351)
Q Consensus 135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~--v 211 (351)
++.+.+.|+.|.-+++.............. .. ...-.-+..+++|+.+|.|++|...-.-...... ... +
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~-----e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFID-----EG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhh-----cc--eeecccCceEEeecccceEEEecCCccchHHHhhhcccccc
Confidence 466678889998888874322211111111 11 1112234679999999999999877221111111 111 2
Q ss_pred EE-EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEe--eCCCeEEEEEcCC
Q 018700 212 RN-VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSA--GTDSTVNLWLVST 284 (351)
Q Consensus 212 ~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~ 284 (351)
-+ +.--.++. +..+++.||.|+.|+... .+.+-....|+ .++.....+..+ .+++.+ |.|..++.|++..
T Consensus 105 ~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 105 DLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccccccc-eeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 22 22223333 788999999999999885 55555555566 555555555555 677777 7788888888865
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.045 Score=44.25 Aligned_cols=160 Identities=12% Similarity=0.073 Sum_probs=92.9
Q ss_pred ceeeeEECCCCCc-EEEeecCC-eEEEEEcccCCcCceeecc---e-eEEEEcCCCCCcEEEEecC-----CCeEEEEec
Q 018700 170 YLSGGAWDPHDVN-AVAATCES-SVQFWDLRSMGKTNSIEHA---H-VRNVDYDTKKKHLLVTAAD-----ESGIHLWDL 238 (351)
Q Consensus 170 ~v~~~~~~~~~~~-l~~~~~d~-~i~iwd~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~ 238 (351)
....++++|..+. ++.+-.-| ...++|....+....+... | .-.=.|+|||. +|+..-+ -|.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEec
Confidence 3456778876554 33444444 4567898887766665422 2 44557999999 5554333 378999999
Q ss_pred ccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEE-EcCCCCCCCCCCcccccCC--cccccccce--eec--
Q 018700 239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVSTSNHDELPSESLVESP--NQRANSLLN--SYS-- 311 (351)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~-- 311 (351)
+..-+.+-++..|.-....+.|.+|| +.++.+. |-|... |.... +.....++.... +...++++. ++.
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR~--~lNldsMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGRT--ELNLDSMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred ccccceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCcc--ccchhhcCccEEEEeccccchhhhccCchh
Confidence 97556677888888888899999999 7776554 334443 22110 000000000000 000133322 222
Q ss_pred cccceEEEEEeCCCCCceEEEeeeC
Q 018700 312 DYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 312 ~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
.+...|+.++..+||. +++.+-..
T Consensus 223 l~~lSiRHld~g~dgt-vwfgcQy~ 246 (366)
T COG3490 223 LRQLSIRHLDIGRDGT-VWFGCQYR 246 (366)
T ss_pred hhhcceeeeeeCCCCc-EEEEEEee
Confidence 3445688999999987 66665543
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.30 E-value=0.098 Score=45.31 Aligned_cols=207 Identities=9% Similarity=0.148 Sum_probs=90.8
Q ss_pred EEEE-ecCCcEEEEEcCCCCCCcccccccc-------cCcccceeeeEECCCCCcEEEee------cCCeEEEEEcccCC
Q 018700 136 KLVS-IDEENIFLWSLDCSNKNAQVQSKQS-------SGMLHYLSGGAWDPHDVNAVAAT------CESSVQFWDLRSMG 201 (351)
Q Consensus 136 ~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~ 201 (351)
+++. -..+.|+|.|+.+.....++..... .+. .....+..-|+|+.++++- ..|.+.++|-++.+
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~-s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL-SRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E-EEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC-CCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 5554 4678999999985443322221110 011 1223344557888887753 23577788877665
Q ss_pred cCceeecce-----eEEEEcCCCCCcEEEEec--------------------CCCeEEEEecccCCcceeEeeCCC--Cc
Q 018700 202 KTNSIEHAH-----VRNVDYDTKKKHLLVTAA--------------------DESGIHLWDLRMLKAPIQELPGHT--HW 254 (351)
Q Consensus 202 ~~~~~~~~~-----v~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~--~~ 254 (351)
.....+... -..+-|.|..+ ++++.. ...++.+||+.+ .+.++++.--. .-
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGEEGQM 246 (461)
T ss_dssp EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-TTEEE
T ss_pred ccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCCCCCc
Confidence 554444322 66778888776 666653 124699999997 77888887432 23
Q ss_pred eeEEEec--CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc----ccccceeeccccceEEEEEeCCCCCc
Q 018700 255 TWAVCCN--PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR----ANSLLNSYSDYEDSVYGLAWSSREPW 328 (351)
Q Consensus 255 v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~ 328 (351)
...|.|. |+...-++.+...++|..|--.....-. ........+.+. -.+.+..+..-..-|+.|..|.|.++
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 5567764 4442334444445555544332210000 000000000000 00112222223456899999999998
Q ss_pred eEEEeeeCCeEEEeecCc
Q 018700 329 IFASLSYDGRVVVESVKP 346 (351)
Q Consensus 329 ~l~s~~~dg~v~vw~~~~ 346 (351)
+.+++-.+|.||.||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 888888999999999975
No 378
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.25 E-value=0.026 Score=48.22 Aligned_cols=164 Identities=11% Similarity=0.101 Sum_probs=85.0
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcce-EEEEEcccccCCCCCCcceeeeeeecc--ccceeEEEecCCCCCcEE
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKL 137 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~ 137 (351)
+..-...+..+.|+|....+++-|.+|.-+.. -|||-+.+. +.....+..| ...+..=-|.|+|..+..
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d--------g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD--------GSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT--------S---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC--------CCcceeeecCCCCcccccccccCCCCEEEE
Confidence 34455678899999999999999999888875 489988742 2222222222 233444568999997666
Q ss_pred EEe-c---CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC----------------CeEEEEEc
Q 018700 138 VSI-D---EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----------------SSVQFWDL 197 (351)
Q Consensus 138 ~~~-~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------~~i~iwd~ 197 (351)
.+. . +..|.-+|+.+++.. .+.... ....+--++++++++-=+.| -.|+++++
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERR-RLMEMP------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EE-EEEEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EeecCCCCceEEEeeCCCCCCce-EEEeCC------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 552 2 335666777764332 111111 23344456777754432332 14566777
Q ss_pred ccCCcCceee--------cce----eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018700 198 RSMGKTNSIE--------HAH----VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (351)
Q Consensus 198 ~~~~~~~~~~--------~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (351)
+.+....... .++ -....|+||++.+|+++...|...||=+.
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 6654321111 111 45688999999888888888887777554
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.042 Score=44.63 Aligned_cols=169 Identities=11% Similarity=0.099 Sum_probs=105.0
Q ss_pred CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018700 166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (351)
Q Consensus 166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (351)
+....+.++.|+|+.+.|++..+...-.++=...|+.+.+++... ...+++..++. +.++--.++.+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCCc
Confidence 444569999999999999999888777777667788888877443 77788888886 56666678888888876532
Q ss_pred cc---------eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018700 243 AP---------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY 313 (351)
Q Consensus 243 ~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
.. +..........-.++|+|.. ..|..+-+-.-+.||.+.............+ ......+ .
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~-------~~~~~~~--f 231 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLD-------PTADRDL--F 231 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccC-------cccccce--E
Confidence 11 11111124567789999999 6677777777788887764211000000000 0000000 1
Q ss_pred cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 314 EDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
-..|.++.|++....+++-+.+++.+.-.+..
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 12366777876555466666666666655544
No 380
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.20 E-value=0.12 Score=46.89 Aligned_cols=107 Identities=11% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCCCCCcccccccccCcc---------------cce-eeeEECCCCCcEEEeecCC---------------
Q 018700 142 EENIFLWSLDCSNKNAQVQSKQSSGML---------------HYL-SGGAWDPHDVNAVAATCES--------------- 190 (351)
Q Consensus 142 d~~v~iwd~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~~~d~--------------- 190 (351)
++.+.-+|..+++.............. ..+ ...++.+.+..+++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 577888888877665544321100000 001 1234444566777776554
Q ss_pred ---eEEEEEcccCCcCceeecce--e-----------EEEE-cCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018700 191 ---SVQFWDLRSMGKTNSIEHAH--V-----------RNVD-YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 191 ---~i~iwd~~~~~~~~~~~~~~--v-----------~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
.|.-+|+.+++....++..+ . ..+. ..-....+++.++.+|.+..+|.++ ++.+-...
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeEeE
Confidence 78899999998887765321 1 1111 1111112577788999999999998 65555443
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.16 E-value=0.11 Score=43.36 Aligned_cols=189 Identities=11% Similarity=0.093 Sum_probs=87.8
Q ss_pred eEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-c
Q 018700 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-K 202 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~ 202 (351)
..+....++. ..+.+..|. ||...++....+...... ...+..+..++++.+++++.......-||.-... .
T Consensus 107 ~~i~~l~~~~--~~l~~~~G~--iy~T~DgG~tW~~~~~~~---~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 107 FGITALGDGS--AELAGDRGA--IYRTTDGGKTWQAVVSET---SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ 179 (302)
T ss_dssp EEEEEEETTE--EEEEETT----EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E
T ss_pred eEEEEcCCCc--EEEEcCCCc--EEEeCCCCCCeeEcccCC---cceeEeEEECCCCcEEEEECcccEEEEecCCCccce
Confidence 3343334443 333333444 455555555544443332 2378888889999988777666666667744221 1
Q ss_pred Cceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC----cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018700 203 TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK----APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (351)
Q Consensus 203 ~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 277 (351)
........ +..+.|.|++. +.+ ....|.|++=+..... +++..+......+..++|.+++ ...++|+.. .+
T Consensus 180 ~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~G-~l 255 (302)
T PF14870_consen 180 PHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGSG-TL 255 (302)
T ss_dssp EEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT--E
T ss_pred EEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeCCc-cE
Confidence 11111122 99999999987 444 4488888887722101 1111111223457899999987 777766654 33
Q ss_pred EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018700 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVE 342 (351)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 342 (351)
. .....+. .++.......-...++.+.|.++.+ -+ ..+.+|.|--|
T Consensus 256 ~-~S~DgGk----------------tW~~~~~~~~~~~n~~~i~f~~~~~-gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 256 L-VSTDGGK----------------TWQKDRVGENVPSNLYRIVFVNPDK-GF-VLGQDGVLLRY 301 (302)
T ss_dssp E-EESSTTS----------------S-EE-GGGTTSSS---EEEEEETTE-EE-EE-STTEEEEE
T ss_pred E-EeCCCCc----------------cceECccccCCCCceEEEEEcCCCc-eE-EECCCcEEEEe
Confidence 2 2222200 0222222223344578888876544 34 44568877655
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.14 E-value=0.098 Score=42.35 Aligned_cols=186 Identities=11% Similarity=0.041 Sum_probs=103.2
Q ss_pred eecCCc--ceeeeeeCCCCCceEEEEeecCCcc--eEEEEEcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCc
Q 018700 61 LFSHPN--EIWDLSSCPFDQRIFSTVFSTGESY--GAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHD 135 (351)
Q Consensus 61 ~~~h~~--~v~~i~~~~~~~~l~~~~~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~ 135 (351)
...|.. -.-.+.|..++..+-++ |.-| .|+.+|+. +++......-.. ----.++.. +..+
T Consensus 38 ~ypHd~~aFTQGL~~~~~g~LyEST----G~yG~S~l~~~d~~---------tg~~~~~~~l~~~~FgEGit~~--~d~l 102 (264)
T PF05096_consen 38 TYPHDPTAFTQGLEFLDDGTLYEST----GLYGQSSLRKVDLE---------TGKVLQSVPLPPRYFGEGITIL--GDKL 102 (264)
T ss_dssp EEE--TT-EEEEEEEEETTEEEEEE----CSTTEEEEEEEETT---------TSSEEEEEE-TTT--EEEEEEE--TTEE
T ss_pred ECCCCCcccCccEEecCCCEEEEeC----CCCCcEEEEEEECC---------CCcEEEEEECCccccceeEEEE--CCEE
Confidence 344553 33467776666666665 3433 68888887 444443332211 111223333 3334
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---e--
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H-- 210 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~-- 210 (351)
+..+-.++...+||.++.+....... . ..-+.++ .+++.|+.+.....++++|..+.+....+... .
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~y---~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFPY---P---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE----S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred EEEEecCCeEEEEccccceEEEEEec---C---CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 56666789999999986444333222 1 1456666 46788888888889999998877666555422 1
Q ss_pred --eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---------------CCCCceeEEEecCCCCCeEEEee
Q 018700 211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---------------GHTHWTWAVCCNPEYDGFILSAG 272 (351)
Q Consensus 211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~s~~ 272 (351)
++-+.|- +|. +.|--=....|...|..+ ++.+..+. ....-.+.|+++|..+++++||=
T Consensus 175 ~~LNELE~i-~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 175 SNLNELEYI-NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp --EEEEEEE-TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 6667775 453 555444555666777665 44333321 01345789999998867777663
No 383
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.12 E-value=0.031 Score=49.75 Aligned_cols=150 Identities=12% Similarity=0.141 Sum_probs=90.8
Q ss_pred cceeeeEECCCCCcEEEee---cCCeEEEEEcccCCcCceeecceeEEEEcCCCC----CcEEEEecCCCeEEEEecccC
Q 018700 169 HYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKK----KHLLVTAADESGIHLWDLRML 241 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~ 241 (351)
.++.+++|. ||+.++... .+|.+++=|. ..+..| .||..+.|.|-+ +.+|| -.....|.+|.+...
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF--EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF--EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc--ceeeeeeecCcccCCCCceEE-EeccceEEEEEeccC
Confidence 388999998 566554432 3444443221 122222 348999998863 33444 556679999998621
Q ss_pred C----cceeEeeC-C--CCc--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018700 242 K----APIQELPG-H--THW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD 312 (351)
Q Consensus 242 ~----~~~~~~~~-~--~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
. +.+..... . .-+ -..+.|+|.. ..|+.-.....-.+++++.. ...+..--.
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d------------------~srVkaDi~ 153 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCD------------------SSRVKADIK 153 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeC------------------CceEEEecc
Confidence 1 11111111 1 112 2457799998 77777666555556777751 233333234
Q ss_pred ccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 313 YEDSVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
..+.|.+.+|.+||++++++.+..=.-++||-
T Consensus 154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 45679999999999987777776666788884
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.11 Score=42.16 Aligned_cols=229 Identities=12% Similarity=0.058 Sum_probs=124.9
Q ss_pred eeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce-EEEEEcccccCCCCCCcceee
Q 018700 35 TLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERI 113 (351)
Q Consensus 35 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~ 113 (351)
+.....+++..+.-++..++-+... .-+..-..|+|+|.-+.-++.. -.-|+ ..++|.. ..+..
T Consensus 40 saf~~~dgs~g~a~~~eaGk~v~~~---~lpaR~Hgi~~~p~~~ravafA---RrPGtf~~vfD~~---------~~~~p 104 (366)
T COG3490 40 SAFDARDGSFGAATLSEAGKIVFAT---ALPARGHGIAFHPALPRAVAFA---RRPGTFAMVFDPN---------GAQEP 104 (366)
T ss_pred eeeeccCCceeEEEEccCCceeeee---ecccccCCeecCCCCcceEEEE---ecCCceEEEECCC---------CCcCc
Confidence 3344566777777777765433322 2344556888998766544432 34443 5678876 22222
Q ss_pred eeeeccccc--eeEEEecCCCCCcEEEEec-----CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe
Q 018700 114 AALDAHVGK--INCVLWWSSGRHDKLVSID-----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA 186 (351)
Q Consensus 114 ~~~~~h~~~--v~~~~~~~~~~~~~~~~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 186 (351)
.++...++. --.=.|+|||.. +.++-. -|.|-|||.+..-... .+...|--....+.|.+||+.++.+
T Consensus 105 v~~~s~~~RHfyGHGvfs~dG~~-LYATEndfd~~rGViGvYd~r~~fqrv----gE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 105 VTLVSQEGRHFYGHGVFSPDGRL-LYATENDFDPNRGVIGVYDAREGFQRV----GEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred EEEecccCceeecccccCCCCcE-EEeecCCCCCCCceEEEEeccccccee----cccccCCcCcceeEEecCCcEEEEe
Confidence 222211111 011259999995 555522 3789999998432211 1222333345678899999988876
Q ss_pred ec------------------CCeEEEEEcccCCcCceeecc----e--eEEEEcCCCCCcEEEEecCCCe----EEEEec
Q 018700 187 TC------------------ESSVQFWDLRSMGKTNSIEHA----H--VRNVDYDTKKKHLLVTAADESG----IHLWDL 238 (351)
Q Consensus 187 ~~------------------d~~i~iwd~~~~~~~~~~~~~----~--v~~~~~~~~~~~~l~~~~~dg~----i~i~d~ 238 (351)
.. .-++.+.|..+++.+.+...+ + +..++..++|. +.+.+...|. --+.-.
T Consensus 180 nGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~ 258 (366)
T COG3490 180 NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGH 258 (366)
T ss_pred CCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceee
Confidence 42 123456666666655544322 1 88899999997 4443322221 111111
Q ss_pred ccCCcceeEeeC-------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 239 RMLKAPIQELPG-------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 239 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
...+++++-+.. ....|-+|+.+.+.....+|+-..+...+||..+
T Consensus 259 ~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 259 FRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred ccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 111333333321 2245677887766524555555566788999998
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0023 Score=60.23 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=72.9
Q ss_pred EEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018700 223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR 302 (351)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (351)
.++.|++.|.+-..|++..-.+...=..-.++|++++|+.+| ..++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~------------------ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHR------------------ 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccC------------------
Confidence 688899999999999875222223323346899999999999 9999999999999999998
Q ss_pred ccccceeeccccceEEE---EEeCCCCCceEEEeeeCCeEEEeec
Q 018700 303 ANSLLNSYSDYEDSVYG---LAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 303 ~~~~~~~~~~~~~~v~~---~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
++.++.+..|..+.++ +.+..++. .+.++...|. +|++
T Consensus 162 -~k~l~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 -AKILKVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred -CcceeeeeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 7777777666554443 44555555 6777776665 5554
No 386
>PRK10115 protease 2; Provisional
Probab=96.90 E-value=0.41 Score=45.43 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=102.7
Q ss_pred cceeeeeeCCCCCceEEEEeecC-CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC--
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTG-ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-- 142 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d-- 142 (351)
-.+..+.++|+++.|+.+...+| +...|++-|+. ++..+...-... -..++|.++++.++++.-.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~---------tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE---------TGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC---------CCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCC
Confidence 34667889999998887753333 33457788876 222211111111 14589999998755554322
Q ss_pred ---CcEEEEEcCCCCCCcccccccccCccccee-eeEECCCCCcEEEee---cCCeEEEEEcc--cCCcCceeecce--e
Q 018700 143 ---ENIFLWSLDCSNKNAQVQSKQSSGMLHYLS-GGAWDPHDVNAVAAT---CESSVQFWDLR--SMGKTNSIEHAH--V 211 (351)
Q Consensus 143 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~d~~i~iwd~~--~~~~~~~~~~~~--v 211 (351)
..|+.+++.++......+...... ... ....+.++++++..+ .++.+.+++.. .+.....+.... .
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~---~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 272 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDD---TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE 272 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCC---CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE
Confidence 467888888763322222221111 122 333344777766544 34678888853 233222222121 2
Q ss_pred EEEEcCCCCCcEEEEecC---CCeEEEEecccCCcceeEeeCC-C-CceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018700 212 RNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELPGH-T-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (351)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 283 (351)
..+. +..+. +++.... ...|...++.... ....+..+ . ..+..+.+.. + .++++...++.-+++-+.
T Consensus 273 ~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~-~-~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 273 YSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT-D-WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC-C-EEEEEEEeCCEEEEEEEc
Confidence 2222 33343 3333322 2234444444212 23344444 2 3677787773 2 677777778876666554
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.86 E-value=0.25 Score=42.37 Aligned_cols=243 Identities=9% Similarity=0.039 Sum_probs=116.8
Q ss_pred ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc-eeeeee----eccccceeEEEecCC---CCCcEEE
Q 018700 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAAL----DAHVGKINCVLWWSS---GRHDKLV 138 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~----~~h~~~v~~~~~~~~---~~~~~~~ 138 (351)
..+.|+|.|+++.+++- ..|.|++++... .. ..+..+ .........++++|+ ..+++++
T Consensus 3 ~P~~~a~~pdG~l~v~e-----~~G~i~~~~~~g--------~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE-----RSGRIWVVDKDG--------SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY 69 (331)
T ss_dssp SEEEEEEETTSCEEEEE-----TTTEEEEEETTT--------EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred CceEEEEeCCCcEEEEe-----CCceEEEEeCCC--------cCcceecccccccccccCCcccceeccccCCCCEEEEE
Confidence 45789999998776663 689999998331 11 222222 234567789999994 3334444
Q ss_pred EecC--------CcEEEEEcCCCCC----Ccccccccc--cCcccceeeeEECCCCCcEEEeecC-------------Ce
Q 018700 139 SIDE--------ENIFLWSLDCSNK----NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATCE-------------SS 191 (351)
Q Consensus 139 ~~~d--------~~v~iwd~~~~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~ 191 (351)
.... ..|.-|.+..... ...+..... ....+....+.|.|++...++.+.. |.
T Consensus 70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ 149 (331)
T PF07995_consen 70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGK 149 (331)
T ss_dssp EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTE
T ss_pred EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccce
Confidence 4421 2344455543311 111111111 1123356679999999665554421 34
Q ss_pred EEEEEcccCC------------cCceeecce--eEEEEcCCC-CCcEEEE-ecCCCeEEEEecccCC-------------
Q 018700 192 VQFWDLRSMG------------KTNSIEHAH--VRNVDYDTK-KKHLLVT-AADESGIHLWDLRMLK------------- 242 (351)
Q Consensus 192 i~iwd~~~~~------------~~~~~~~~~--v~~~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~------------- 242 (351)
|.-.+....- ....+..+. ...++|+|. +. ++++ -+.+..=.|.-++...
T Consensus 150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~ 228 (331)
T PF07995_consen 150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY 228 (331)
T ss_dssp EEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred EEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence 4434433210 112222233 889999999 65 4443 2222222222222100
Q ss_pred ---------------cceeEeeCCCCceeEEEecCCC------CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018700 243 ---------------APIQELPGHTHWTWAVCCNPEY------DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ 301 (351)
Q Consensus 243 ---------------~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (351)
.|+..+..| ..+..+.|.... ..+|++.-..+.|....+.....
T Consensus 229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~-------------- 293 (331)
T PF07995_consen 229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS-------------- 293 (331)
T ss_dssp TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE--------------
T ss_pred CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC--------------
Confidence 133334433 445666665322 14555555566777776654100
Q ss_pred cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEE
Q 018700 302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVV 340 (351)
Q Consensus 302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 340 (351)
.......+......+.++++.|||. ++++...+|.|.
T Consensus 294 -~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 294 -VTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred -ccceEEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 0111112234445799999999998 677766777664
No 388
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.76 E-value=0.25 Score=41.02 Aligned_cols=145 Identities=10% Similarity=0.141 Sum_probs=81.1
Q ss_pred CCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCC
Q 018700 75 PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN 154 (351)
Q Consensus 75 ~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~ 154 (351)
..++.|+.+ .++| +.+++... ........ +...|..+...|+-+. +..-.|+.++++++....
T Consensus 5 ~~~~~L~vG----t~~G-l~~~~~~~--------~~~~~~i~--~~~~I~ql~vl~~~~~--llvLsd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVG----TEDG-LYVYDLSD--------PSKPTRIL--KLSSITQLSVLPELNL--LLVLSDGQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEE----ECCC-EEEEEecC--------CccceeEe--ecceEEEEEEecccCE--EEEEcCCccEEEEchhhc
Confidence 346677775 3666 88888831 12222222 2233999999998773 333336999999998543
Q ss_pred CCccccc---------ccccCcccceeeeE--ECCCCCcEEEeecCCeEEEEEcccC-----CcCceeecce-eEEEEcC
Q 018700 155 KNAQVQS---------KQSSGMLHYLSGGA--WDPHDVNAVAATCESSVQFWDLRSM-----GKTNSIEHAH-VRNVDYD 217 (351)
Q Consensus 155 ~~~~~~~---------~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~-v~~~~~~ 217 (351)
....... .........+..++ -...+...++......|.+|..... +....+..+. +..++|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~ 147 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL 147 (275)
T ss_pred cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence 3331100 00001112333333 1223444555555668999887763 2334444444 8899998
Q ss_pred CCCCcEEEEecCCCeEEEEeccc
Q 018700 218 TKKKHLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~ 240 (351)
++ .++.|..+ ...+.|+.+
T Consensus 148 ~~---~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 148 GN---KICVGTSK-GFYLIDLNT 166 (275)
T ss_pred CC---EEEEEeCC-ceEEEecCC
Confidence 33 46666654 477888885
No 389
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.00023 Score=61.09 Aligned_cols=144 Identities=14% Similarity=0.119 Sum_probs=102.9
Q ss_pred ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018700 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 248 (351)
......|-|.+..++.++.+..+..||-. ++......... ...++|..+++.+++.+-..+.+.+||+.+.. .+++
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--tqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--TQQL 112 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--HHHH
Confidence 34455788888889999999999999954 44444444333 77889999998777778888999999998632 2333
Q ss_pred eC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018700 249 PG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP 327 (351)
Q Consensus 249 ~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (351)
+. -...-.-+.|++.. ..++.+...+.+.|++... ...+.....|...+++++|.+.+.
T Consensus 113 E~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgt-------------------sR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGT-------------------SRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred hccCcchHHHHhhccCC-ccccccccccceEEEeccc-------------------hhhhhhhcccccceeEEEecccce
Confidence 31 11111227789988 8888888999999999987 454544545888899999999764
Q ss_pred ceEEEeeeCCe
Q 018700 328 WIFASLSYDGR 338 (351)
Q Consensus 328 ~~l~s~~~dg~ 338 (351)
.+.++.|..
T Consensus 173 --vil~dcd~~ 181 (615)
T KOG2247|consen 173 --VILCDCDNT 181 (615)
T ss_pred --eeecCcHHH
Confidence 556665543
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.032 Score=53.35 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=79.4
Q ss_pred ceeeeEECCCCCcEEEe--ecCCeEEEEEcccCCcCc-----ee-------ecce-eEEEEcCCCCCcEEEEecCCCeEE
Q 018700 170 YLSGGAWDPHDVNAVAA--TCESSVQFWDLRSMGKTN-----SI-------EHAH-VRNVDYDTKKKHLLVTAADESGIH 234 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~-----~~-------~~~~-v~~~~~~~~~~~~l~~~~~dg~i~ 234 (351)
++..+...+|+...++. +++-.|..||+++-.... .+ .... ..++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556667776654443 344588999998532211 01 1111 778999998775677788999999
Q ss_pred EEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+..+....+.+..+. .....++++|+|.| ..++.|-..|++.-|...-
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeeccc
Confidence 998876444444443 45678999999999 9999999999999887764
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.65 E-value=0.27 Score=39.89 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=74.3
Q ss_pred CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
=.++...+||.. +.+.+.++.- ...=+.++ .++.. ++.+.....++++|..+......+........
T Consensus 107 Wk~~~~f~yd~~---------tl~~~~~~~y-~~EGWGLt--~dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 107 WKEGTGFVYDPN---------TLKKIGTFPY-PGEGWGLT--SDGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp SSSSEEEEEETT---------TTEEEEEEE--SSS--EEE--ECSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ecCCeEEEEccc---------cceEEEEEec-CCcceEEE--cCCCE-EEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 477889999987 6777777743 34566776 55664 66665567899999886554443333222222
Q ss_pred ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee----------------cce-eEEEEcCCCCCcEEEEecC
Q 018700 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----------------HAH-VRNVDYDTKKKHLLVTAAD 229 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------------~~~-v~~~~~~~~~~~~l~~~~~ 229 (351)
...++.+.|- +|...+=.-....|...|..+|+....+. ... .+.+|++|....+++||=.
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 3356667775 34333323345667777777776544332 012 8899999988877777754
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.64 E-value=0.0083 Score=34.33 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=27.9
Q ss_pred cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018700 314 EDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 345 (351)
...|..++|+|... ++|.+..||.|.+|.++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 34589999999998 99999999999999984
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.63 E-value=0.3 Score=40.06 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=87.2
Q ss_pred ceeeeEECCCCCcEEEee---cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEe-cccCCcc
Q 018700 170 YLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD-LRMLKAP 244 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~ 244 (351)
.+.+.+++++++.+++.. ....++++. .+........+. +....|++++. +.+....+...+++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence 678889999999877765 234455544 443333333344 88889999986 555555566666663 2221211
Q ss_pred eeEeeCC--CCceeEEEecCCCCCeEEEe--eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018700 245 IQELPGH--THWTWAVCCNPEYDGFILSA--GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (351)
Q Consensus 245 ~~~~~~~--~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (351)
...+... ...|..+.++|||.+..+.. ..++.|.+=-+...... .+ .....++.........+.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g---------~~-~~l~~~~~~~~~~~~~v~~v 171 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG---------VP-RRLTGPRRVAPPLLSDVTDV 171 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC---------Cc-ceeccceEecccccCcceee
Confidence 2222211 12899999999994444444 23566766655431110 00 00012222222334568999
Q ss_pred EeCCCCCceEEEee-eCCeEE
Q 018700 321 AWSSREPWIFASLS-YDGRVV 340 (351)
Q Consensus 321 ~~~~~~~~~l~s~~-~dg~v~ 340 (351)
+|.+++. +++.+. .++.+.
T Consensus 172 ~W~~~~~-L~V~~~~~~~~~~ 191 (253)
T PF10647_consen 172 AWSDDST-LVVLGRSAGGPVV 191 (253)
T ss_pred eecCCCE-EEEEeCCCCCcee
Confidence 9999988 554444 444333
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.015 Score=55.10 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=71.8
Q ss_pred CCcEEEeecCCeEEEEEcccCCc--Cceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee
Q 018700 180 DVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW 256 (351)
Q Consensus 180 ~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 256 (351)
+..++.++..|.+-..|++..-. ...-.... |.+++|+.+|. +++.|-.+|.|.+||+.. +++++.+..|..+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 45578888888898888775321 11111111 99999999998 888899999999999987 678888887777665
Q ss_pred EEE---ecCCCCCeEEEeeCCCeEEEEEcC
Q 018700 257 AVC---CNPEYDGFILSAGTDSTVNLWLVS 283 (351)
Q Consensus 257 ~~~---~~~~~~~~l~s~~~dg~i~iwd~~ 283 (351)
.+- +..++ ..++++...|. +|...
T Consensus 177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQN-SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence 544 44555 67888888776 56543
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.57 E-value=0.0092 Score=34.14 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.2
Q ss_pred cceeeeEECCCCCcEEEeecCCeEEEEEcccCCc
Q 018700 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK 202 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 202 (351)
..|..++|+|..+.++.++.+|.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 37899999999999999999999999998 4544
No 396
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.51 E-value=0.62 Score=42.39 Aligned_cols=133 Identities=12% Similarity=0.062 Sum_probs=75.1
Q ss_pred cEEEEEcCCCCCCccccccccc-----Ccccc-eeeeEECCCCC---cEEEeecCCeEEEEEcccCCcCceeecceeEEE
Q 018700 144 NIFLWSLDCSNKNAQVQSKQSS-----GMLHY-LSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV 214 (351)
Q Consensus 144 ~v~iwd~~~~~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~ 214 (351)
.|.-+|..+++........... ....+ +..+. .-++. .+++++.+|.+...|.++++.+...... ...+
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~ 334 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPM 334 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-cccc
Confidence 6888888887766554322110 10001 11111 01232 4677788999999999999988776532 1223
Q ss_pred EcCCCCCcEEEE-----------------ecCCCeEEEEecccCCcceeEeeCCC--------Cce--eEEEecCCCCCe
Q 018700 215 DYDTKKKHLLVT-----------------AADESGIHLWDLRMLKAPIQELPGHT--------HWT--WAVCCNPEYDGF 267 (351)
Q Consensus 215 ~~~~~~~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~v--~~~~~~~~~~~~ 267 (351)
+.+| +. +++. ...+|.+.-+|+.+ ++.+-+..... .+. ..+. -.+ .+
T Consensus 335 ~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g-~~ 408 (488)
T cd00216 335 AYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT-GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG-NL 408 (488)
T ss_pred ccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCC-CcEeeEeeCCccccccccCCcccCcceE--ecC-Ce
Confidence 4444 22 2221 12357788888877 54444443210 111 1122 234 67
Q ss_pred EEEeeCCCeEEEEEcCC
Q 018700 268 ILSAGTDSTVNLWLVST 284 (351)
Q Consensus 268 l~s~~~dg~i~iwd~~~ 284 (351)
++.++.||.|+.+|..+
T Consensus 409 v~~g~~dG~l~ald~~t 425 (488)
T cd00216 409 VFAGAADGYFRAFDATT 425 (488)
T ss_pred EEEECCCCeEEEEECCC
Confidence 88888999999999998
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.49 E-value=0.14 Score=40.24 Aligned_cols=142 Identities=15% Similarity=0.063 Sum_probs=83.0
Q ss_pred cceeeeeeCCCCCceEEEEeecCC-----cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGE-----SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
...++-..+|+|++..-+...-+. .+.++.|-.. ..+..+...-..-+.++|+.+.+.+.+.-+
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-----------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-----------HQVELIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC-----------CCceeeehhccCCccccccccCcEEEEEcc
Confidence 455666778999885544211111 1234444433 112222222334467899988886555557
Q ss_pred cCCcEEEEEc--CCCCCCc-----ccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--e
Q 018700 141 DEENIFLWSL--DCSNKNA-----QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--V 211 (351)
Q Consensus 141 ~d~~v~iwd~--~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v 211 (351)
.+-+|.-||. .++.... .+......+ ....-.++...+|...++.-+.++|...|+.+++.+..+..+. +
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e-~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE-SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcC-CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 7888877884 3332111 111100001 1123345566678877777788999999999999998887555 9
Q ss_pred EEEEcCCC
Q 018700 212 RNVDYDTK 219 (351)
Q Consensus 212 ~~~~~~~~ 219 (351)
++++|--.
T Consensus 257 tsccFgGk 264 (310)
T KOG4499|consen 257 TSCCFGGK 264 (310)
T ss_pred EEEEecCC
Confidence 99999543
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.41 E-value=0.33 Score=44.88 Aligned_cols=212 Identities=10% Similarity=0.029 Sum_probs=102.9
Q ss_pred eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC------CcEEEEEcCCCCCCccccccccc
Q 018700 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQSS 165 (351)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~ 165 (351)
.+..||... ..+.....+. +...-.+++...+ .++++|+.| .++..||..+..-.. .......
T Consensus 302 ~ve~yd~~~-------~~w~~~a~m~-~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~ 370 (571)
T KOG4441|consen 302 SVECYDPKT-------NEWSSLAPMP-SPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTK 370 (571)
T ss_pred eeEEecCCc-------CcEeecCCCC-cccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCceec-cCCccCc
Confidence 577777762 2344444443 2222344444443 356777766 457788887654211 1111111
Q ss_pred CcccceeeeEECCCCCcEEEeecCC-----eEEEEEcccCCc--Cceeecce--eEEEEcCCCCCcEEEEecCCC-----
Q 018700 166 GMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGK--TNSIEHAH--VRNVDYDTKKKHLLVTAADES----- 231 (351)
Q Consensus 166 ~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg----- 231 (351)
.+...+..+ +|...++|+.|| ++..||.++.+- +....... ...+.+ +|. +.++|+.++
T Consensus 371 R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 371 RSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCL 443 (571)
T ss_pred cccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCcccc
Confidence 111122222 566677777765 577788876542 22222111 222232 454 778888554
Q ss_pred -eEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCC-----eEEEEEcCCCCCCCCCCcccccCCccccc
Q 018700 232 -GIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-----TVNLWLVSTSNHDELPSESLVESPNQRAN 304 (351)
Q Consensus 232 -~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
++..||..+.. ..+..+..-.... .++.- ++ .+.+.||.|+ +|..||..+ ..+
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~-----------------~~W 503 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NG-KIYVVGGFDGTSALSSVERYDPET-----------------NQW 503 (571)
T ss_pred ceEEEEcCCCCceeecCCcccccccc-eEEEE-CC-EEEEECCccCCCccceEEEEcCCC-----------------Cce
Confidence 57788876521 0111111111111 12222 33 6777888776 366677765 124
Q ss_pred ccceeeccccceEEEEEeCCCCCceEEEeeeCCe-----EEEeec
Q 018700 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR-----VVVESV 344 (351)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-----v~vw~~ 344 (351)
..+.........+....+ ++. +.+.|+.||. |..||.
T Consensus 504 ~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred eEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCC
Confidence 444333333333333333 234 7888888774 555544
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.39 E-value=0.35 Score=38.14 Aligned_cols=134 Identities=12% Similarity=0.089 Sum_probs=84.0
Q ss_pred ceeeeEECCCCCcEEEeecC---------CeEEEEEcccCCcCceee-cce-eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018700 170 YLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (351)
..++-..+|+|++..-.-.| |.++.|-+. ..+..+. .-. -+.++|+.+.+.+.++-+.+-.|.-||.
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 56777889999984332222 445555432 1222222 111 5678999888866677777778877874
Q ss_pred ccC-C-----cceeEeeC---CCC-ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018700 239 RML-K-----APIQELPG---HTH-WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308 (351)
Q Consensus 239 ~~~-~-----~~~~~~~~---~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (351)
..+ + +.+..++. ... ..-.++...+| .+.++.-..++|...|..+ ++.+.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~t-------------------GK~L~ 247 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTT-------------------GKILL 247 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCC-------------------CcEEE
Confidence 321 1 11222221 111 12345556677 7777777788999999998 99999
Q ss_pred eeccccceEEEEEeCCC
Q 018700 309 SYSDYEDSVYGLAWSSR 325 (351)
Q Consensus 309 ~~~~~~~~v~~~~~~~~ 325 (351)
+++-....|++++|--.
T Consensus 248 eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 248 EIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEcCCCceEEEEecCC
Confidence 99888888999999643
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.35 E-value=0.29 Score=45.26 Aligned_cols=143 Identities=7% Similarity=0.011 Sum_probs=70.1
Q ss_pred CCCcEEEeecC-----CeEEEEEcccCC--cCceeecce--eEEEEcCCCCCcEEEEecCCC------------------
Q 018700 179 HDVNAVAATCE-----SSVQFWDLRSMG--KTNSIEHAH--VRNVDYDTKKKHLLVTAADES------------------ 231 (351)
Q Consensus 179 ~~~~l~~~~~d-----~~i~iwd~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg------------------ 231 (351)
+++..+.|+.+ ..+..||..+.+ .+..+.... ...+++ ++. +++.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCE-EEEEeCCCccccccccccccccccccc
Confidence 46666667654 357889987653 222222111 222222 455 777777542
Q ss_pred -----eEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCC------eEEEEEcCCCCCCCCCCcccccCC
Q 018700 232 -----GIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS------TVNLWLVSTSNHDELPSESLVESP 299 (351)
Q Consensus 232 -----~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~ 299 (351)
.+..||.++.. ..+..+....... +++ .-++ .+.+.|+.++ .+..||..+.
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~-------------- 490 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKD-DIYVVCDIKDEKNVKTCIFRYNTNTY-------------- 490 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECC-EEEEEeCCCCCCccceeEEEecCCCC--------------
Confidence 46778876411 1111111111111 122 2234 5666666542 3566776640
Q ss_pred cccccccceeeccccceEEEEEeCCCCCceEEEeeeCC--eEEEeecCc
Q 018700 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--RVVVESVKP 346 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~~~~ 346 (351)
..+..+..+.........+.. ++. +.+.||.|+ .+..||+.+
T Consensus 491 --~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 491 --NGWELITTTESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred --CCeeEccccCcccccceeEEE--CCE-EEEEeeecceeehhhcCccc
Confidence 014444444433333333333 455 889999888 667777654
No 401
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.25 E-value=0.11 Score=45.62 Aligned_cols=144 Identities=11% Similarity=0.103 Sum_probs=92.9
Q ss_pred CCCcEEE-eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCc------EEEEecCCCeEEEEecccCCcceeEeeC
Q 018700 179 HDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH------LLVTAADESGIHLWDLRMLKAPIQELPG 250 (351)
Q Consensus 179 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (351)
+...|+. ++....++-.|++.|+.+....... + -+.|.|...+ --++|-++..|.-.|.|-.+..+...+.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 3344443 4456788888999998888877544 5 6778776431 1234677778888888765544443331
Q ss_pred CCCceeEEEecCC---CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018700 251 HTHWTWAVCCNPE---YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP 327 (351)
Q Consensus 251 ~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (351)
...++.-.|+.- ...++|.++..|-|++||.-. ...-..+++....|..+..+.+|.
T Consensus 557 -KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-------------------~rAKtalP~lG~aIk~idvta~Gk 616 (776)
T COG5167 557 -KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-------------------KRAKTALPGLGDAIKHIDVTANGK 616 (776)
T ss_pred -hhccccccccccccccCceEEEecCCCceeeehhhc-------------------chhhhcCcccccceeeeEeecCCc
Confidence 222222223221 125999999999999999864 333344566677899999999999
Q ss_pred ceEEEeeeCCeEEEeecC
Q 018700 328 WIFASLSYDGRVVVESVK 345 (351)
Q Consensus 328 ~~l~s~~~dg~v~vw~~~ 345 (351)
++||+|- ..+.+-|++
T Consensus 617 ~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 617 HILATCK--NYLLLTDVP 632 (776)
T ss_pred EEEEeec--ceEEEEecc
Confidence 7777774 466666654
No 402
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.33 Score=37.56 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=85.4
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 170 (351)
..|++|++. .++.+..-.-....+..=-...-+.++...+-.+|.-..+|.++.+........ + .
T Consensus 68 S~ir~~~L~---------~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---G---e 132 (262)
T COG3823 68 SKIRVSDLT---------TGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---G---E 132 (262)
T ss_pred ceeEEEecc---------CceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC---C---c
Confidence 369999998 445444332222222222222234444555667888889998864444333221 1 3
Q ss_pred eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec---ce----eEEEEcCCCCCcEEEEecCCCeEEEEeccc---
Q 018700 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---AH----VRNVDYDTKKKHLLVTAADESGIHLWDLRM--- 240 (351)
Q Consensus 171 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--- 240 (351)
-+.++ .++..|+.+....+++.-|.++-....++.. +. ++.+.|- +|. +++--=.+..|...|..+
T Consensus 133 GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcE
Confidence 44443 4667788887778888888776554444331 11 3444443 332 333222222333333332
Q ss_pred --------CCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018700 241 --------LKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (351)
Q Consensus 241 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 272 (351)
....+..-..|..-.+.+++.|++.++++||-
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 11112222345566789999999867777764
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.98 E-value=1 Score=39.59 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=50.4
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC----CC---
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS----SR--- 325 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~--- 325 (351)
..+.+++.+|.+ .+.++...-|.|.++|+.. +..++.+++..+. .+.|- +.
T Consensus 308 R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~-------------------~~vvrmWKGYRdA--qc~wi~~~~~~~~~ 365 (415)
T PF14655_consen 308 REGESICLSPSG-RLAAVTDSLGRVLLIDVAR-------------------GIVVRMWKGYRDA--QCGWIEVPEEGDRD 365 (415)
T ss_pred ceEEEEEECCCC-CEEEEEcCCCcEEEEECCC-------------------ChhhhhhccCccc--eEEEEEeecccccc
Confidence 457889999998 8999988889999999998 7777777765432 11111 00
Q ss_pred -------------CCceEEEeeeCCeEEEeecCc
Q 018700 326 -------------EPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 326 -------------~~~~l~s~~~dg~v~vw~~~~ 346 (351)
...+++-+-.-|.|.||.++.
T Consensus 366 ~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~ 399 (415)
T PF14655_consen 366 RSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQ 399 (415)
T ss_pred cccccccCCCCcceEEEEEEeccCCeEEEEecCC
Confidence 122344555688899999865
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=1.6 Score=40.68 Aligned_cols=177 Identities=8% Similarity=0.053 Sum_probs=87.9
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 170 (351)
..|+|+++. ++.+..+.-...++-.+.|+.+.. ++.-..+|++.+|++.... .... ..........
T Consensus 64 ~~I~If~~s----------G~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~-ie~~-svg~e~~~~~ 129 (829)
T KOG2280|consen 64 PYIRIFNIS----------GQLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEF-IESN-SVGFESQMSD 129 (829)
T ss_pred eeEEEEecc----------ccchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhh-hccc-ccccccccCc
Confidence 458888875 455544433444888999999988 6666789999999997422 1111 1111111123
Q ss_pred eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-ce----eEEEEcCCCCC--cEEEEecCCCeEEEEecccCCc
Q 018700 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH----VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKA 243 (351)
Q Consensus 171 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~----v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~ 243 (351)
|..+.+..+| +++-..+|.+.+-.-.........+. +. -.|-...+++. ..++--...--..++.......
T Consensus 130 I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~ 207 (829)
T KOG2280|consen 130 IVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV 207 (829)
T ss_pred eeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc
Confidence 4444444444 33333345454432221112222221 11 12222222211 1111111000111222222111
Q ss_pred ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
....+....+.+..+..||.. .+|+--..+|.|.+-++..
T Consensus 208 q~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 208 QLHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDL 247 (829)
T ss_pred cccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecch
Confidence 222333223567788899998 9999999999988887776
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.71 E-value=0.59 Score=43.21 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=67.6
Q ss_pred EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEe--cCCCCCeEEEeeCCCeEEEEEcCCCCCCC
Q 018700 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCC--NPEYDGFILSAGTDSTVNLWLVSTSNHDE 289 (351)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 289 (351)
-+.-+.-++ ..++.+....+.|||.+. .....+-. .....|..+.| .|++ ..+++.|....|.++--.......
T Consensus 34 li~gss~~k-~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 34 LISGSSIKK-IAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred eEeecccCc-EEEEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhc
Confidence 333344454 455555566899999986 43222211 34688999998 4778 777777888888888543210000
Q ss_pred CCCcccccCCcccccccceee--cccc-ceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 290 LPSESLVESPNQRANSLLNSY--SDYE-DSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
.. ....++..+ ..|+ .+|.+..|.++|. +++++ ++.+.|++
T Consensus 111 -------~~---p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 111 -------KG---PSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFD 154 (631)
T ss_pred -------CC---cccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEEC
Confidence 00 013333333 2233 5789999999987 44433 35677775
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.47 E-value=0.63 Score=40.60 Aligned_cols=143 Identities=11% Similarity=0.081 Sum_probs=74.5
Q ss_pred cceeEEEecCCCCCcEEEEe-----------cCC-cEEEEEcCCCC-CCc--ccccccccCcccceeeeEECCCCCcEEE
Q 018700 121 GKINCVLWWSSGRHDKLVSI-----------DEE-NIFLWSLDCSN-KNA--QVQSKQSSGMLHYLSGGAWDPHDVNAVA 185 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~-----------~d~-~v~iwd~~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 185 (351)
.....|+|.++|+ ++++.. ..+ .|.+++-.++. ... .++... ......+++.+++ |++
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G--lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG--VYV 86 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC--EEE
Confidence 3456789999998 234332 122 67777654322 211 122211 2256788998877 555
Q ss_pred eecCCeEEEEEcccC-----Cc--C-ceeec-----ce-eEEEEcCCCCCcEEEEecCC-------------------Ce
Q 018700 186 ATCESSVQFWDLRSM-----GK--T-NSIEH-----AH-VRNVDYDTKKKHLLVTAADE-------------------SG 232 (351)
Q Consensus 186 ~~~d~~i~iwd~~~~-----~~--~-~~~~~-----~~-v~~~~~~~~~~~~l~~~~~d-------------------g~ 232 (351)
+......++.|.... +. + ..+.. .| ...++|.|+|. +.++-+.. |.
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCce
Confidence 554443334354321 11 1 11221 23 78899999997 44433311 34
Q ss_pred EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018700 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD 274 (351)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 274 (351)
|.-++... ..+..+..--.....++|+|+| .++++-..+
T Consensus 166 i~r~~pdg--~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~ 204 (367)
T TIGR02604 166 LFRYNPDG--GKLRVVAHGFQNPYGHSVDSWG-DVFFCDNDD 204 (367)
T ss_pred EEEEecCC--CeEEEEecCcCCCccceECCCC-CEEEEccCC
Confidence 45555442 2233333223445789999998 777664433
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.35 E-value=1.3 Score=36.37 Aligned_cols=146 Identities=10% Similarity=0.053 Sum_probs=83.9
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE-cccC
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD-LRSM 200 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~ 200 (351)
.+.+.++++++..+.++...++.-.+|-...+.......... .+..-.|++++...++...+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~------~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG------SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC------ccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688899999999544444234444444444333333333211 677779999977666656566666663 2333
Q ss_pred CcC-ceee---cc-eeEEEEcCCCCCcEEEEe--cCCCeEEEEecccC--C------cceeEeeCCCCceeEEEecCCCC
Q 018700 201 GKT-NSIE---HA-HVRNVDYDTKKKHLLVTA--ADESGIHLWDLRML--K------APIQELPGHTHWTWAVCCNPEYD 265 (351)
Q Consensus 201 ~~~-~~~~---~~-~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~--~------~~~~~~~~~~~~v~~~~~~~~~~ 265 (351)
... .... .. .|..+.++|||..+.+.. ..++.|.+--+... + .++.........+..+.|.+++
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~- 177 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS- 177 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-
Confidence 221 1111 11 399999999999544444 23467776654321 1 1222222335678999999998
Q ss_pred CeEEEeeCC
Q 018700 266 GFILSAGTD 274 (351)
Q Consensus 266 ~~l~s~~~d 274 (351)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 666555443
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.30 E-value=1.4 Score=36.50 Aligned_cols=206 Identities=15% Similarity=0.157 Sum_probs=112.5
Q ss_pred ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-----cccceeEEEecCCCC--------
Q 018700 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWWSSGR-------- 133 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~-------- 133 (351)
.-+.|+++|.+..-++- ...+...+||.......- . ....+.++.. .....+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVad----ngT~~~TlYdg~~~~~~g-~-~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVAN----TGTGTATLYVGNPDTQPL-V-QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred ccceeEecCCCCEEEec----CCcceEEeecCCcccccC-C-ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 45789999988776663 566789999986211000 0 1112223321 134567777764332
Q ss_pred ---CcEEEEecCCcEEEEEcCCCCC---Cccc-ccccccCcccceeeeEECC--CCCcEEEee-cCCeEEEEEcccCCcC
Q 018700 134 ---HDKLVSIDEENIFLWSLDCSNK---NAQV-QSKQSSGMLHYLSGGAWDP--HDVNAVAAT-CESSVQFWDLRSMGKT 203 (351)
Q Consensus 134 ---~~~~~~~~d~~v~iwd~~~~~~---~~~~-~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-~d~~i~iwd~~~~~~~ 203 (351)
..++.+++||+|.-|...-... ...+ ......+ .--..+++.. .+.+|+++. ..++|.++|-.-.+..
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 1256678899999998653222 1111 1111111 1233445443 356666664 6789999985533211
Q ss_pred --ceeecc-----e----e---------EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--CCCceeEEEec
Q 018700 204 --NSIEHA-----H----V---------RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCN 261 (351)
Q Consensus 204 --~~~~~~-----~----v---------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~ 261 (351)
..+..+ . | .-..-.++.. -=+.|..-|.|-+||+. ++.++++.. .-..-+.|+..
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeC
Confidence 111111 1 2 1122223322 12334455789999987 667777742 22334667765
Q ss_pred C------CCCCeEEEeeCCCeEEEEEcCC
Q 018700 262 P------EYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 262 ~------~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
| .+ .+|+---.||+|..||..+
T Consensus 253 Pa~FG~~sg-~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 253 PESFGSLSG-ALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred hhhhCCCCC-CeEEeecCCceeEEecCCC
Confidence 5 33 6777666799999999987
No 409
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.27 E-value=1.8 Score=37.50 Aligned_cols=150 Identities=11% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCcEEEeecCCeEEEEEcccCCcCceeecce------eEEEEcCCCCCc--EEEEecCC---CeEEEEecccCCcceeEe
Q 018700 180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH------VRNVDYDTKKKH--LLVTAADE---SGIHLWDLRMLKAPIQEL 248 (351)
Q Consensus 180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v~~~~~~~~~~~--~l~~~~~d---g~i~i~d~~~~~~~~~~~ 248 (351)
...++....++-+.+||+. |+.+..+..+. ...+.+. ++. ++++...+ .+|++|.+......+..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 3456666678899999998 45555555444 3333342 332 23333332 479999886423334443
Q ss_pred eCC-------CCceeEEEe--cC-CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEE
Q 018700 249 PGH-------THWTWAVCC--NP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY 318 (351)
Q Consensus 249 ~~~-------~~~v~~~~~--~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (351)
... ...+..+|+ +| +|..+++....+|.+..|.+....... ...++++.|...+ .+-
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~------------v~~~lVR~f~~~s-Q~E 211 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK------------VSATLVREFKVGS-QPE 211 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS------------EEEEEEEEEE-SS--EE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc------------EeeEEEEEecCCC-cce
Confidence 321 123567776 33 454577788889999888876311100 0145667775533 477
Q ss_pred EEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 319 GLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 319 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
.+....... .|..+-++.-|.-|+.++
T Consensus 212 GCVVDDe~g-~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 212 GCVVDDETG-RLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEETTTT-EEEEEETTTEEEEEESSC
T ss_pred EEEEecccC-CEEEecCccEEEEEecCC
Confidence 777776655 677777776666665543
No 410
>PHA02713 hypothetical protein; Provisional
Probab=95.25 E-value=0.76 Score=42.56 Aligned_cols=89 Identities=11% Similarity=-0.016 Sum_probs=46.5
Q ss_pred eEEEEEcccCCc--Cceeecce-eEEEEcCCCCCcEEEEecCC------CeEEEEeccc-C-CcceeEeeCCCCceeEEE
Q 018700 191 SVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM-L-KAPIQELPGHTHWTWAVC 259 (351)
Q Consensus 191 ~i~iwd~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~~~~v~~~~ 259 (351)
.+..||.++.+- +..+..+. -.+++. -++. +.+.|+.+ ..+..||.++ . -..+..+.........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 477788776532 22222222 112222 2354 67777654 2467888875 1 122233332222222233
Q ss_pred ecCCCCCeEEEeeCCC--eEEEEEcCC
Q 018700 260 CNPEYDGFILSAGTDS--TVNLWLVST 284 (351)
Q Consensus 260 ~~~~~~~~l~s~~~dg--~i~iwd~~~ 284 (351)
+ ++ .+.++|+.|+ .+..||..+
T Consensus 511 ~--~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 511 H--DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred E--CC-EEEEEeeecceeehhhcCccc
Confidence 2 45 8888999888 677777776
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.14 Score=49.30 Aligned_cols=149 Identities=9% Similarity=-0.000 Sum_probs=90.1
Q ss_pred cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee---eeeccccceeEEEecCCCCCcEEEEecC
Q 018700 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA---ALDAHVGKINCVLWWSSGRHDKLVSIDE 142 (351)
Q Consensus 66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~d 142 (351)
-.|..+...+|+...++.. .+.+-.|..||+.+....... +..++. +......-..++.|+|.-....++...|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~--tsng~~v~~fD~~~fs~s~~~-~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d 177 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVS--TSNGEAVYSFDLEEFSESRYE-TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD 177 (1405)
T ss_pred ccceEEEeccCCceEEEEE--ecCCceEEEEehHhhhhhhhh-hccccccccchhccccccccccccCCccchhhhhccc
Confidence 4556666677765555443 344557889999743221110 111111 1112233457889999876545666789
Q ss_pred CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ce-eEEEEc
Q 018700 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH-VRNVDY 216 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~-v~~~~~ 216 (351)
+.|++..+......... .......++++|+|.|+.+++|-..|++.-|-..- +....+.. .. |.+|.|
T Consensus 178 lsl~V~~~~~~~~~v~s-----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTS-----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred cchhhhhhhhhhhhhcc-----cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEE
Confidence 99998877632222111 12234789999999999999999999998886542 22222221 12 999999
Q ss_pred CCCCCcE
Q 018700 217 DTKKKHL 223 (351)
Q Consensus 217 ~~~~~~~ 223 (351)
-....++
T Consensus 252 l~t~efl 258 (1405)
T KOG3630|consen 252 LSTQEFL 258 (1405)
T ss_pred ecceeEE
Confidence 8777633
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.10 E-value=1.7 Score=36.47 Aligned_cols=157 Identities=6% Similarity=-0.034 Sum_probs=72.6
Q ss_pred eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018700 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (351)
Q Consensus 61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 140 (351)
...-.+.+..+..+++++++++. ..-..+.-|+-.. ....+. -+....+|..+.|.|++. +....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs----~~G~~~~s~~~G~-------~~w~~~--~r~~~~riq~~gf~~~~~--lw~~~ 204 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVS----SRGNFYSSWDPGQ-------TTWQPH--NRNSSRRIQSMGFSPDGN--LWMLA 204 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEE----TTSSEEEEE-TT--------SS-EEE--E--SSS-EEEEEE-TTS---EEEEE
T ss_pred ccCCcceeEeEEECCCCcEEEEE----CcccEEEEecCCC-------ccceEE--ccCccceehhceecCCCC--EEEEe
Confidence 34445778888889999877774 3444456777441 122322 223467899999999987 44445
Q ss_pred cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ceeEEEE
Q 018700 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AHVRNVD 215 (351)
Q Consensus 141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~v~~~~ 215 (351)
..|.|+.=+.................-...+.+++|.+++...+ ++..|.+ +.....++.=..-.. ..+..+.
T Consensus 205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 205 RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccE-EEeCCCCccceECccccCCCCceEEEE
Confidence 77888887722111111000000001112578999998766555 4445544 344455543222221 1177888
Q ss_pred cCCCCCcEEEEecCCCeEEEE
Q 018700 216 YDTKKKHLLVTAADESGIHLW 236 (351)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~ 236 (351)
|.+..+ -++ -+++|.|.-|
T Consensus 283 f~~~~~-gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 283 FVNPDK-GFV-LGQDGVLLRY 301 (302)
T ss_dssp EEETTE-EEE-E-STTEEEEE
T ss_pred EcCCCc-eEE-ECCCcEEEEe
Confidence 866554 455 4566776554
No 413
>PRK10115 protease 2; Provisional
Probab=95.07 E-value=3.3 Score=39.53 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=117.0
Q ss_pred EeeeecCCCCcceEEEeeeeeCC-CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeec--CCcceEE
Q 018700 18 CISDVKADTDHTSFLTGTLSLKE-ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST--GESYGAA 94 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~--~~d~~i~ 94 (351)
.+.....++++..++++.-..+. ...+++.++... ..+...+.+ .-..++|.++++.|+.+.... .....|.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 45555667777777777544333 345666666532 211111111 114689999998887765321 1224677
Q ss_pred EEEcccccCCCCCCcceeeeeeecccccee-EEEecCCCCCcEEEE--ecCCcEEEEEcCCCC-CCcccccccccCcccc
Q 018700 95 IWQIPELYGQLNSPQLERIAALDAHVGKIN-CVLWWSSGRHDKLVS--IDEENIFLWSLDCSN-KNAQVQSKQSSGMLHY 170 (351)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~--~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~ 170 (351)
.+++.+ +..+....+........ .+..+.+++++++.+ ..++.+.+++..... ......... .+ .
T Consensus 203 ~h~lgt-------~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~ 271 (686)
T PRK10115 203 RHTIGT-------PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-KD---H 271 (686)
T ss_pred EEECCC-------ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-CC---C
Confidence 777762 11122223333223333 333344777655544 235788999854321 111122111 11 1
Q ss_pred eeeeEECCCCCcEEEeec----CCeEEEEEccc-CCcCceeec-ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018700 171 LSGGAWDPHDVNAVAATC----ESSVQFWDLRS-MGKTNSIEH-AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (351)
Q Consensus 171 v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~-~~~~~~~~~-~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (351)
...+. +. +..++..+. ...|...++.. ++....+.. .. +..+.+.. ++++++...++.-+++-+....
T Consensus 272 ~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 272 EYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred EEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEcCCC
Confidence 22222 22 233443332 22344445542 221222222 11 77777763 3478888888876665554323
Q ss_pred cceeEee-CCCCceeEEEec--CCCCCeEEEeeC---CCeEEEEEcCC
Q 018700 243 APIQELP-GHTHWTWAVCCN--PEYDGFILSAGT---DSTVNLWLVST 284 (351)
Q Consensus 243 ~~~~~~~-~~~~~v~~~~~~--~~~~~~l~s~~~---dg~i~iwd~~~ 284 (351)
..+..+. .....+..+.++ +++..++++.+. -+.+..+|..+
T Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 348 REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 3344443 222223333344 444245544433 44677777765
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.06 E-value=0.62 Score=43.07 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=64.5
Q ss_pred eEECCCCCcEEEeecCCeEEEEEcccCCcCceeec--ce-eEEEEc--CCCCCcEEEEecCCCeEEEEecccCC------
Q 018700 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-VRNVDY--DTKKKHLLVTAADESGIHLWDLRMLK------ 242 (351)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~-v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~------ 242 (351)
+.-+.-++..++-+....+.|||.+.+........ .. |.++.| .|+++.+++ -+....|.+|--....
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLa-VGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILA-VGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEE-EEcCcEEEEEEccchhhhcCCc
Confidence 33344344444444567899999998764333322 22 899988 478885555 4455677777542111
Q ss_pred --cceeEe--eCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 243 --APIQEL--PGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 243 --~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+++.+ ..|+ .+|.+..|.++| .+++.+ ++.+.|+|-..
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCC-eEEEEe--CCEEEEECCCc
Confidence 133333 2344 689999999999 555443 34688887654
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.04 E-value=1.7 Score=37.87 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=52.7
Q ss_pred ceeeeEECCCCCcEEEee-----------cCC-eEEEEEcccC--Cc--Cceeecce--eEEEEcCCCCCcEEEEecCCC
Q 018700 170 YLSGGAWDPHDVNAVAAT-----------CES-SVQFWDLRSM--GK--TNSIEHAH--VRNVDYDTKKKHLLVTAADES 231 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~~--~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg 231 (351)
....++|.++|+.+++-. ..+ .|.+++-..+ +. ...+...- ...+++.+++ ++++ ....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCCe
Confidence 567788998888665532 123 6767664432 21 12222111 7889998887 4553 3433
Q ss_pred eEEEEecccCC----c---ceeEeeC----CCCceeEEEecCCCCCeEEEee
Q 018700 232 GIHLWDLRMLK----A---PIQELPG----HTHWTWAVCCNPEYDGFILSAG 272 (351)
Q Consensus 232 ~i~i~d~~~~~----~---~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~ 272 (351)
..++.|..... + .+..+.. +......++|.|+| .+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 33343543211 1 1112222 23457789999999 5555444
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.03 E-value=0.96 Score=42.92 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=53.3
Q ss_pred cceeeeEECCCCCcEEEeecCCeEEEEEccc----------CCcC---ceee-------cc-e--eEEEEcCCCC--CcE
Q 018700 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRS----------MGKT---NSIE-------HA-H--VRNVDYDTKK--KHL 223 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------~~~~---~~~~-------~~-~--v~~~~~~~~~--~~~ 223 (351)
-.|..+..+|+|..++..|..| |.|..+.. ++.. +++. .. . |..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3688899999999998888765 44444421 1110 1111 01 1 8899999985 236
Q ss_pred EEEecCCCeEEEEecccCCcceeEee
Q 018700 224 LVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 224 l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
|++-.+|+++|+||+.....+.+.+.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEE
Confidence 77888999999999987665555543
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=1.5 Score=38.28 Aligned_cols=152 Identities=9% Similarity=0.079 Sum_probs=88.7
Q ss_pred EEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc
Q 018700 125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 204 (351)
.+-|...++ .+++. ..|.+.-|-....+.... ........++|.++.|++|.+.+++--.+++|.+++....+...
T Consensus 27 gvFfDDaNk-qlfav-rSggatgvvvkgpndDVp--iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 27 GVFFDDANK-QLFAV-RSGGATGVVVKGPNDDVP--ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ceeeccCcc-eEEEE-ecCCeeEEEEeCCCCCCC--ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 344444444 23333 345666676654332111 11111223489999999999999998899999999875433322
Q ss_pred eee----cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeE
Q 018700 205 SIE----HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTV 277 (351)
Q Consensus 205 ~~~----~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i 277 (351)
... .+. |....|..... +.+ -.. .-+.+|......+.++..+.|.-.|+=-.|.++-.-.|++.+ ..+++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e-~A~-i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTE-IAF-ITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred HHHHHhccCcceeEEEEEecCee-EEE-Eec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 222 111 88899987754 333 333 246677665556667777788888888888888723333333 33344
Q ss_pred EEEEcC
Q 018700 278 NLWLVS 283 (351)
Q Consensus 278 ~iwd~~ 283 (351)
.=+-++
T Consensus 180 npf~~~ 185 (657)
T KOG2377|consen 180 NPFHFR 185 (657)
T ss_pred ccEEEe
Confidence 334333
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.90 E-value=0.74 Score=40.74 Aligned_cols=96 Identities=20% Similarity=0.145 Sum_probs=60.9
Q ss_pred EEeecCCeEEEEEcccCC-cCceeecce------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee
Q 018700 184 VAATCESSVQFWDLRSMG-KTNSIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW 256 (351)
Q Consensus 184 ~~~~~d~~i~iwd~~~~~-~~~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 256 (351)
++|-.+..|.-.|.+... .+...+... ..+..-...| +++.++..|.|++||.-. .+.-..+.+....|.
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk 607 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIK 607 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhc-chhhhcCccccccee
Confidence 444456666666766432 222222111 4555555555 689999999999999643 444455667778899
Q ss_pred EEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 257 AVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+..+.+| .++++.+ ...+.+-|++-
T Consensus 608 ~idvta~G-k~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 608 HIDVTANG-KHILATC-KNYLLLTDVPI 633 (776)
T ss_pred eeEeecCC-cEEEEee-cceEEEEeccc
Confidence 99999999 5444433 34677777765
No 419
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.87 E-value=3.1 Score=38.27 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=46.9
Q ss_pred eEECCCCCcEEEeecC-----C-----------eEEEEEcccCCcCceeecce-----------eEEEEcCCCCC--cEE
Q 018700 174 GAWDPHDVNAVAATCE-----S-----------SVQFWDLRSMGKTNSIEHAH-----------VRNVDYDTKKK--HLL 224 (351)
Q Consensus 174 ~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~l 224 (351)
+++.|+...++.+..+ + .|.-.|+++++....++..+ ..-+.+..+|+ .++
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 3666666666665421 2 67778999999887776432 12222333554 478
Q ss_pred EEecCCCeEEEEecccCCcce
Q 018700 225 VTAADESGIHLWDLRMLKAPI 245 (351)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~ 245 (351)
+.+..+|.+++.|.++ ++++
T Consensus 319 ~~~~K~G~~~vlDr~t-G~~i 338 (527)
T TIGR03075 319 AHADRNGFFYVLDRTN-GKLL 338 (527)
T ss_pred EEeCCCceEEEEECCC-Ccee
Confidence 8899999999999887 5554
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.84 E-value=0.089 Score=49.33 Aligned_cols=183 Identities=8% Similarity=0.143 Sum_probs=97.6
Q ss_pred CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC--CCCCcccccccccC
Q 018700 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC--SNKNAQVQSKQSSG 166 (351)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~ 166 (351)
-.+.+++-+... ..+....+++..+.|..+.|.....-.+. -.-|.+.||+++- ++....+.......
T Consensus 109 ~~~~vrvaN~~~--------sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p 178 (1283)
T KOG1916|consen 109 MENGVRVANQEP--------SMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP 178 (1283)
T ss_pred hhhhhhhccCcc--------hhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc
Confidence 445566666541 22222345677788888888543211111 2347889999873 22222222111111
Q ss_pred cccceeeeEECC---CCCcEEEeecCCeEEEEEcccCCcCceeecce--------------eEEEEcCCCCCcEEEEecC
Q 018700 167 MLHYLSGGAWDP---HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--------------VRNVDYDTKKKHLLVTAAD 229 (351)
Q Consensus 167 ~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~~ 229 (351)
....+.-+.|.| +..++..+-.++.+++....+... ..+. +| +.--.++|||. .++.++.
T Consensus 179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~ 255 (1283)
T KOG1916|consen 179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAIS 255 (1283)
T ss_pred CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCc-EEEEeec
Confidence 112334455554 444555556778888766554321 1111 12 22223799998 8999999
Q ss_pred CCeEEEEecccCC----cceeEeeCCC-CceeEEEecCCC------C--CeEEEee-CCCeEEEEEcCC
Q 018700 230 ESGIHLWDLRMLK----APIQELPGHT-HWTWAVCCNPEY------D--GFILSAG-TDSTVNLWLVST 284 (351)
Q Consensus 230 dg~i~i~d~~~~~----~~~~~~~~~~-~~v~~~~~~~~~------~--~~l~s~~-~dg~i~iwd~~~ 284 (351)
||.+++|.+.-.+ ++++..+.|. .+-.|..|+... + .++++++ .+..+++|....
T Consensus 256 dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 9998888765433 3566667776 443343343321 0 2344444 355788998877
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.61 E-value=0.17 Score=28.09 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=25.0
Q ss_pred cceeEEEecCCCC--CcEEEEecCCcEEEEEcCC
Q 018700 121 GKINCVLWWSSGR--HDKLVSIDEENIFLWSLDC 152 (351)
Q Consensus 121 ~~v~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~ 152 (351)
+.|.++.|+|... .+++.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998654 5566666679999999984
No 422
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.30 E-value=5.5 Score=38.55 Aligned_cols=179 Identities=10% Similarity=0.077 Sum_probs=101.5
Q ss_pred EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----------C---CeEEEEEcccCC
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------E---SSVQFWDLRSMG 201 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~iwd~~~~~ 201 (351)
.++....+.+++..++.-++..... .. .......+++.+....+.+.+. . ..++++|-++-+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irt-vp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRT-VP---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceee-ec---CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 4555566788888877533221111 11 1124556666653333333321 1 246677766655
Q ss_pred cCceeecce------eEEEEcCCCCCcEEEEec----------CCCeEEEEecccCCcceeEeeCC--CCceeEEEecCC
Q 018700 202 KTNSIEHAH------VRNVDYDTKKKHLLVTAA----------DESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPE 263 (351)
Q Consensus 202 ~~~~~~~~~------v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~ 263 (351)
.....+... +.++.|..|...++++|. ..|.|.+|.+.. .+.++....+ .+.+.++..- +
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~f-n 839 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVEF-N 839 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhhh-C
Confidence 443333221 666778877433666665 258899998876 3444444322 2344444322 3
Q ss_pred CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018700 264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES 343 (351)
Q Consensus 264 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~ 343 (351)
| +++|.- ...|++|+... .+.++.-..+..++..+...-.+. .++.|.-=+++.+-.
T Consensus 840 g-kllA~I--n~~vrLye~t~-------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 840 G-KLLAGI--NQSVRLYEWTT-------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQ 896 (1096)
T ss_pred C-eEEEec--CcEEEEEEccc-------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEE
Confidence 3 555543 45799999987 556666666777788888777777 677776556555543
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.24 E-value=4.6 Score=38.06 Aligned_cols=116 Identities=9% Similarity=0.170 Sum_probs=72.7
Q ss_pred eEEEEcCCC-CCcEEEEecCCCeEEEEecccCC-------------------cceeEeeCCCCceeEEEec--CCCCCeE
Q 018700 211 VRNVDYDTK-KKHLLVTAADESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCN--PEYDGFI 268 (351)
Q Consensus 211 v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~--~~~~~~l 268 (351)
|+.+....- +..+|+.+.+||.|.+|.++..- +|...+. -...+++++++ ... ++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEE
Confidence 444444322 23478889999999999763210 1222222 23467899998 666 899
Q ss_pred EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC--C---ceEEEeeeCCeEEEee
Q 018700 269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE--P---WIFASLSYDGRVVVES 343 (351)
Q Consensus 269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~l~s~~~dg~v~vw~ 343 (351)
|.++....|.||-......+ ....... .|...|-+|+|-++. . ..+++++-.|.+.+|+
T Consensus 181 AVSsNs~~VTVFaf~l~~~r---------------~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDER---------------FYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecCCceEEEEEEeccccc---------------ccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 99888888998877651000 0000011 245568888887644 1 2677888899999988
Q ss_pred c
Q 018700 344 V 344 (351)
Q Consensus 344 ~ 344 (351)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 424
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.22 E-value=3.4 Score=35.85 Aligned_cols=200 Identities=11% Similarity=0.088 Sum_probs=101.4
Q ss_pred cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeC----CCCCc--eEEEEeecCC--cceEEEEEcc
Q 018700 28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC----PFDQR--IFSTVFSTGE--SYGAAIWQIP 99 (351)
Q Consensus 28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~----~~~~~--l~~~~~~~~~--d~~i~vw~~~ 99 (351)
...+++||. .++-+.++++... .+. .+. .+.++.+..- -.++. |+++. .-. ...|++|.+.
T Consensus 67 ~kSlIigTd---K~~GL~VYdL~Gk--~lq--~~~--~Gr~NNVDvrygf~l~g~~vDlavas--~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 67 AKSLIIGTD---KKGGLYVYDLDGK--ELQ--SLP--VGRPNNVDVRYGFPLNGKTVDLAVAS--DRSDGRNSLRLFRID 135 (381)
T ss_dssp GG-EEEEEE---TTTEEEEEETTS---EEE--EE---SS-EEEEEEEEEEEETTEEEEEEEEE--E-CCCT-EEEEEEEE
T ss_pred ccceEEEEe---CCCCEEEEcCCCc--EEE--eec--CCCcceeeeecceecCCceEEEEEEe--cCcCCCCeEEEEEec
Confidence 455677764 3466777776653 222 111 1233333221 12333 44442 112 2579999987
Q ss_pred cccCCCCCCcceeeeeee-------ccccceeEEEe--cC-CCCCcEEEEecCCcEEEEEcCCCCC--C-cccccccccC
Q 018700 100 ELYGQLNSPQLERIAALD-------AHVGKINCVLW--WS-SGRHDKLVSIDEENIFLWSLDCSNK--N-AQVQSKQSSG 166 (351)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~--~~-~~~~~~~~~~~d~~v~iwd~~~~~~--~-~~~~~~~~~~ 166 (351)
.. +. .+..+. .....+..+|+ ++ ++...+++...+|.+.-|.+..... . ....... .
T Consensus 136 ~~-------~g-~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~ 205 (381)
T PF02333_consen 136 PD-------TG-ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--K 205 (381)
T ss_dssp TT-------TT-EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E
T ss_pred CC-------CC-cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--c
Confidence 21 11 122221 11234666665 44 3554455567889999888863221 1 1111111 1
Q ss_pred cccceeeeEECCCCCcEEEeecCCeEEEEEcccCC--cCcee---ecce----eEEEEcC--CCC-CcEEEEecCCCeEE
Q 018700 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSI---EHAH----VRNVDYD--TKK-KHLLVTAADESGIH 234 (351)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~---~~~~----v~~~~~~--~~~-~~~l~~~~~dg~i~ 234 (351)
....+..+........|+.+-.+.-|.-|+.+... ....+ ...+ +..|++- +++ .|++++.-.+++..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 12268888888888889999989888888876322 11111 1112 6666663 333 36777777888999
Q ss_pred EEecccCCcceeEe
Q 018700 235 LWDLRMLKAPIQEL 248 (351)
Q Consensus 235 i~d~~~~~~~~~~~ 248 (351)
+|+.+.+...+..|
T Consensus 286 Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 286 VYDREGPNAYVGSF 299 (381)
T ss_dssp EEESSTT--EEEEE
T ss_pred EEecCCCCcccceE
Confidence 99987544444444
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.15 E-value=2.9 Score=34.75 Aligned_cols=199 Identities=10% Similarity=0.058 Sum_probs=108.0
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCC-----CCCcccccc--cccCcccceeeeEECCCCC------------c
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-----NKNAQVQSK--QSSGMLHYLSGGAWDPHDV------------N 182 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~-----~~~~~~~~~--~~~~~~~~v~~~~~~~~~~------------~ 182 (351)
.-+.|+++|.+. +.++....+...+||.+.. .+...+... .........+.+.|+.... .
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 357899999887 3555555688999998721 111111111 0000122566777764322 2
Q ss_pred EEEeecCCeEEEEEcccCCc---C--ceeecc---e-eEEEEcC--CCCCcEEEEecCCCeEEEEecccCCcceeEeeCC
Q 018700 183 AVAATCESSVQFWDLRSMGK---T--NSIEHA---H-VRNVDYD--TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH 251 (351)
Q Consensus 183 l~~~~~d~~i~iwd~~~~~~---~--~~~~~~---~-v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (351)
++.+++||+|.-|...-... . ..+... . -..+++. ..+.++.++--.+++|.+||-.- . ++..-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~-~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-R-PPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-c-cccCCCCc
Confidence 56778899999998643322 1 112211 1 3344443 33555666666789999999653 2 11110011
Q ss_pred CCc-------------------eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-
Q 018700 252 THW-------------------TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS- 311 (351)
Q Consensus 252 ~~~-------------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (351)
..+ |+-..-.++. +.=+.|..-|.|-+||.. +.+++.+.
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~--------------------G~l~~r~as 239 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLN--------------------GQLLRRVAS 239 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCC--------------------CcEEEEecc
Confidence 111 1111122222 222334445677788776 56676663
Q ss_pred -cccceEEEEEeCC------CCCceEEEeeeCCeEEEeecC
Q 018700 312 -DYEDSVYGLAWSS------REPWIFASLSYDGRVVVESVK 345 (351)
Q Consensus 312 -~~~~~v~~~~~~~------~~~~~l~s~~~dg~v~vw~~~ 345 (351)
+.-...+.|+..| .+. +|+.--.||+|..+|..
T Consensus 240 ~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 240 SGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCC
Confidence 2234457777755 455 66666679999999975
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.07 E-value=0.21 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=26.5
Q ss_pred eEEEEEeCCCCC--ceEEEeeeCCeEEEeecC-ccc
Q 018700 316 SVYGLAWSSREP--WIFASLSYDGRVVVESVK-PFL 348 (351)
Q Consensus 316 ~v~~~~~~~~~~--~~l~s~~~dg~v~vw~~~-~~~ 348 (351)
.|+++.|+|... .+|+-+-.-+.|.|+|++ .+.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 588999997543 488888889999999998 444
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.97 E-value=4.2 Score=35.98 Aligned_cols=167 Identities=7% Similarity=0.070 Sum_probs=87.7
Q ss_pred eEeeeecCC-CCcceEEEeeeeeCCCCEEEEEEeCCCCCeEE-EEeeecCCcceeeeeeC---CC-CCceEEEEeecCCc
Q 018700 17 RCISDVKAD-TDHTSFLTGTLSLKEENEVHLLRLSSGGTELI-CEGLFSHPNEIWDLSSC---PF-DQRIFSTVFSTGES 90 (351)
Q Consensus 17 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~h~~~v~~i~~~---~~-~~~l~~~~~~~~~d 90 (351)
-.+..+..+ .+..++++|+ ..|.+++++-...+.... ...-..-..+|..+..- +. ....+++. .-
T Consensus 25 l~v~~~~~~~~~~d~IivGS----~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL----hP 96 (418)
T PF14727_consen 25 LCVGNLDNSPSGSDKIIVGS----YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL----HP 96 (418)
T ss_pred EEEEcccCCCCCccEEEEec----cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe----cC
Confidence 334444432 3557888886 468888887654332111 11112234678777653 22 22333332 66
Q ss_pred ceEEEEEcccccCCCCCCcceeeeeeeccc--cceeEEEecCC----CCCcEEEEecCCcEEEEEcCCCCCCcccccccc
Q 018700 91 YGAAIWQIPELYGQLNSPQLERIAALDAHV--GKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS 164 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~----~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 164 (351)
..+.||.+....+....+..-.+..+..|. .....++.-|- ++..+.+-+.||.+.+|+-+...- ...+...
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-~~~lp~~- 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-SRFLPDF- 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-EEEcCCC-
Confidence 789999986432222222222222333332 23333444332 234455558999999999774211 1111111
Q ss_pred cCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018700 165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (351)
Q Consensus 165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 197 (351)
--...+.+.+..+.+++++.+..+.-|..
T Consensus 175 ----llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 175 ----LLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ----CCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 12334677788888888888888887764
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=1.8 Score=37.92 Aligned_cols=101 Identities=11% Similarity=0.148 Sum_probs=69.3
Q ss_pred eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce----eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCC
Q 018700 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI----QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (351)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 286 (351)
|.++.|++|.+ .+++--.+.+|.+++... .++. .+-+.....|....|+..- -+|.-...| +.+|-...
T Consensus 69 I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~-d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~p-- 141 (657)
T KOG2377|consen 69 IKSIKFSLDNK-ILAVQRTSKTVDFCNFIP-DNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVLP-- 141 (657)
T ss_pred eeEEEeccCcc-eEEEEecCceEEEEecCC-CchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEch--
Confidence 99999999998 899999999999999843 2222 2223334568888998753 445444443 66776654
Q ss_pred CCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018700 287 HDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS 334 (351)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 334 (351)
....++..+.|...|+-..|.++-.-.+.+.+
T Consensus 142 ----------------ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 ----------------EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred ----------------hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 14556666777878888889998774444444
No 429
>PHA03098 kelch-like protein; Provisional
Probab=93.80 E-value=3 Score=38.55 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=31.0
Q ss_pred CCCcEEEeecC-----CeEEEEEcccCCcC--ceeecce-eEEEEcCCCCCcEEEEecCC------CeEEEEeccc
Q 018700 179 HDVNAVAATCE-----SSVQFWDLRSMGKT--NSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM 240 (351)
Q Consensus 179 ~~~~l~~~~~d-----~~i~iwd~~~~~~~--~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 240 (351)
++..++.|+.+ ..+..||..+.+-. ..+..+. -.+++. -++. +++.|+.+ ..+..||..+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCC
Confidence 45666666644 35777887765421 1111112 112222 2444 67777632 4588888764
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=1.4 Score=39.30 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=51.3
Q ss_pred ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc-ccCCc-ccccccceeeccccceEEEEEeCCCC--Cce
Q 018700 254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL-VESPN-QRANSLLNSYSDYEDSVYGLAWSSRE--PWI 329 (351)
Q Consensus 254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~ 329 (351)
.|..+..++.| ..++-.|.+|.+.++-.+..++........ ...+. -.-+..+.+-..| -.+..++|+|+. ...
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~-ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS-LTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCc-eeeeeccccCCccCCce
Confidence 46778889999 788888888866555433222111100000 00000 0001222222222 246788999976 336
Q ss_pred EEEeeeCCeEEEeecCcc
Q 018700 330 FASLSYDGRVVVESVKPF 347 (351)
Q Consensus 330 l~s~~~dg~v~vw~~~~~ 347 (351)
+..-+.|+.||+|++.+.
T Consensus 183 L~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEEecCcEEEEEecCCc
Confidence 777788999999998763
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.52 E-value=3.3 Score=39.51 Aligned_cols=90 Identities=9% Similarity=0.095 Sum_probs=51.0
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC-CCCCC-CCCcccccCCcc-cccccceeeccccceEEEEEeCCCC---
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST-SNHDE-LPSESLVESPNQ-RANSLLNSYSDYEDSVYGLAWSSRE--- 326 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~--- 326 (351)
-.|..|.++|+| .+++..|..| |.|-.+.. .+... ...+.....+.. .-+..+. ...+...|..+.|+|.+
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCC
Confidence 468899999999 8888888766 44444432 11100 000000000000 0001111 12334579999999964
Q ss_pred CceEEEeeeCCeEEEeecCc
Q 018700 327 PWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 327 ~~~l~s~~~dg~v~vw~~~~ 346 (351)
. .|+.-..|+.+|+||+.+
T Consensus 162 ~-~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 162 S-HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred C-eEEEEecCCEEEEEecCC
Confidence 5 677778899999999964
No 432
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.43 E-value=1.3 Score=33.83 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.8
Q ss_pred eEEEEEeCCCC-----CceEEEeeeCCeEEEeecCc
Q 018700 316 SVYGLAWSSRE-----PWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 316 ~v~~~~~~~~~-----~~~l~s~~~dg~v~vw~~~~ 346 (351)
.|.+++|||.| +.+|++...++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999943 45899999999999998654
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.25 E-value=7.6 Score=36.71 Aligned_cols=112 Identities=8% Similarity=0.064 Sum_probs=70.6
Q ss_pred ceeeeEECC--CCCcEEEeecCCeEEEEEccc-------C----C---------cCceeecce-eEEEEcC--CCCCcEE
Q 018700 170 YLSGGAWDP--HDVNAVAATCESSVQFWDLRS-------M----G---------KTNSIEHAH-VRNVDYD--TKKKHLL 224 (351)
Q Consensus 170 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~-v~~~~~~--~~~~~~l 224 (351)
.|+.+.... ....|+++..||.|.+|.+++ . . +...+..+. +..++++ ...+ ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EE
Confidence 344443322 345678888999999997631 1 0 111112122 7888887 6666 88
Q ss_pred EEecCCCeEEEEecccCCc--ceeEeeCCCCceeEEEecCCC--CC---eEEEeeCCCeEEEEEc
Q 018700 225 VTAADESGIHLWDLRMLKA--PIQELPGHTHWTWAVCCNPEY--DG---FILSAGTDSTVNLWLV 282 (351)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~---~l~s~~~dg~i~iwd~ 282 (351)
|++++...|.||-...... ....-..|...|-+|+|-++. +. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888886654211 111111356778899986654 12 7788888999999888
No 434
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.18 E-value=0.014 Score=50.54 Aligned_cols=141 Identities=13% Similarity=0.177 Sum_probs=92.5
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eecCCeEEEEEcccC
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSM 200 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~ 200 (351)
......|-|.+.. ++.++.+..+..||-.. +....... ......++|..+++.+++ +-..+.+.+||+.+.
T Consensus 36 ~pi~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n~------tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 36 GPIIHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELNP------TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred ccceeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccCC------chhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 3345668888876 55666678888888663 22222211 225677888888877654 456789999999864
Q ss_pred CcCceeecc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC
Q 018700 201 GKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275 (351)
Q Consensus 201 ~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 275 (351)
.. ..++.+ + -.-+.|++..+ .++.+...|.+.+|+.+. .+.+...-.|...++++++.+.+ +.+.++.|.
T Consensus 108 yt-qqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 108 YT-QQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred hH-HHHhccCcchHHHHhhccCCc-cccccccccceEEEeccc-hhhhhhhcccccceeEEEecccc--eeeecCcHH
Confidence 32 222211 1 22267898888 677788999999999987 33333333489999999999976 444444443
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.09 E-value=0.51 Score=37.66 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=42.5
Q ss_pred ECCCCCcEEEeecCCeEEEEEcccCCcCcee------ec--------c-e-eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018700 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSI------EH--------A-H-VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (351)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~--------~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (351)
+..++.++++.+.+|.+++||+.+++.+..- -. . . |..+.++.+|. -+++ -.+|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~-lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVT-LSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEE-EeCCCEEEeccc
Confidence 3446888999999999999999987654322 10 1 1 77777777775 4443 345677788765
No 436
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.01 E-value=6.4 Score=35.23 Aligned_cols=138 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---------eEEEEcCCCC-----CcEEEEec---------
Q 018700 172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKK-----KHLLVTAA--------- 228 (351)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~~~-----~~~l~~~~--------- 228 (351)
+.++|.|+++.|++--..|.|++++..++.......... ...|+++|+- ..+|+...
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Q ss_pred -CCCeEEEEecc----cCCcceeEeeCC----CCceeEEEecCCCCCeEEEeeCCCe----------E------------
Q 018700 229 -DESGIHLWDLR----MLKAPIQELPGH----THWTWAVCCNPEYDGFILSAGTDST----------V------------ 277 (351)
Q Consensus 229 -~dg~i~i~d~~----~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~----------i------------ 277 (351)
....|.-|.+. ........+... ...-..|+|.|+| .++++.+..+. .
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG-~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~ 191 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG-KIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNG 191 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC-cEEEEECCCCCCCcccccCcchhccccccccccc
Q ss_pred --------EEEEcCCCCCCCCCCcccccCCccccccc--------------ceeeccccceEEEEEeCCCCCceEEE
Q 018700 278 --------NLWLVSTSNHDELPSESLVESPNQRANSL--------------LNSYSDYEDSVYGLAWSSREPWIFAS 332 (351)
Q Consensus 278 --------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~l~s 332 (351)
+|+.+.. ... +..+ +|.+ ...++|+|++. ++++
T Consensus 192 ~d~~~~~GkILRin~-------------------DGsiP~dNPf~~g~~~eIyA~-G~RN-p~Gla~dp~G~-Lw~~ 246 (454)
T TIGR03606 192 KDYHAYMGKVLRLNL-------------------DGSIPKDNPSINGVVSHIFTY-GHRN-PQGLAFTPDGT-LYAS 246 (454)
T ss_pred cCcccCceEEEEEcC-------------------CCCCCCCCCccCCCcceEEEE-eccc-cceeEECCCCC-EEEE
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.73 E-value=5.3 Score=34.31 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=55.3
Q ss_pred ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc--ccccccCcccceeeeEECCC---CCcEEEeec-C------
Q 018700 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPH---DVNAVAATC-E------ 189 (351)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d------ 189 (351)
..+.|+|.|+++ ++++-..|.|++++.. +.....+ ...........+..++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 357899999987 6667668999999933 2221111 11112223447889999994 344444332 1
Q ss_pred --CeEEEEEcccC-------CcCc-eee----cce-eEEEEcCCCCCcEEEEec
Q 018700 190 --SSVQFWDLRSM-------GKTN-SIE----HAH-VRNVDYDTKKKHLLVTAA 228 (351)
Q Consensus 190 --~~i~iwd~~~~-------~~~~-~~~----~~~-v~~~~~~~~~~~~l~~~~ 228 (351)
..|.-|....+ +.+. .+. ..| ...|+|.|+|. ++++.+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G 132 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVG 132 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeC
Confidence 23444444333 1111 111 134 77899999996 555544
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=92.70 E-value=6 Score=34.05 Aligned_cols=151 Identities=8% Similarity=0.046 Sum_probs=81.4
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 199 (351)
...+.++.+.|++. +++.+..|.+..- .+.+......... .-...++++.+.++++.+++ +..|.+.+=....
T Consensus 172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg~tW~~~~~---~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQTAWTPHQR---NSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCCCeEEEeeC---CCcccceeeeEcCCCCEEEE-ecCCEEEEccCCC
Confidence 34678888888876 5555556655432 2222222222211 12347899999998876555 4567665323333
Q ss_pred CCcCceeec-----ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---CCCCceeEEEecCCCCCeEEE
Q 018700 200 MGKTNSIEH-----AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILS 270 (351)
Q Consensus 200 ~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s 270 (351)
+..-..... .. +..+.+.|++. +++ ++.+|.+.. .... ++.-.... .-....+.+.|..++ ..++
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~- 318 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE-KGFV- 318 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCC-ceEE-
Confidence 332221111 12 78899999876 555 455665543 2222 33233322 122357778877665 5555
Q ss_pred eeCCCeEEEEEcC
Q 018700 271 AGTDSTVNLWLVS 283 (351)
Q Consensus 271 ~~~dg~i~iwd~~ 283 (351)
.+..|.|.-|+-.
T Consensus 319 ~G~~G~il~~~~~ 331 (334)
T PRK13684 319 LGQRGVLLRYVGS 331 (334)
T ss_pred ECCCceEEEecCC
Confidence 5567887766543
No 439
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=2.5 Score=37.79 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=49.4
Q ss_pred eEEEEcCCCCCcEEEEecCCCeEEEEecccCC--------cce---eEe-------e-CCCCceeEEEecCCC--CCeEE
Q 018700 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--------API---QEL-------P-GHTHWTWAVCCNPEY--DGFIL 269 (351)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~---~~~-------~-~~~~~v~~~~~~~~~--~~~l~ 269 (351)
|..+..++.|. .++-.+.+|.+.++=.+..+ ++. +++ . ...-.+..++|+|+. +..|.
T Consensus 106 V~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 78888999998 66667777766555433222 111 111 1 111235678899987 67888
Q ss_pred EeeCCCeEEEEEcCCC
Q 018700 270 SAGTDSTVNLWLVSTS 285 (351)
Q Consensus 270 s~~~dg~i~iwd~~~~ 285 (351)
.-+.|..||+||....
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8899999999999764
No 440
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.31 E-value=1.3 Score=33.90 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=26.4
Q ss_pred ceeEEEecCCC-----CCeEEEeeCCCeEEEEEcCC
Q 018700 254 WTWAVCCNPEY-----DGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 254 ~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+..++|||.| +.+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999965 46899999999999998764
No 441
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.28 E-value=9.7 Score=35.51 Aligned_cols=141 Identities=11% Similarity=-0.046 Sum_probs=68.7
Q ss_pred cEEEEecCC-----cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC------CeEEEEEcccCCc-
Q 018700 135 DKLVSIDEE-----NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE------SSVQFWDLRSMGK- 202 (351)
Q Consensus 135 ~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~- 202 (351)
++++++.|| +|-.||..+..-.. ..... ..........+ ++...++|+.+ .++..||..+.+-
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~-~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPML-TRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EEEEeccccccccccEEEecCCCCcccc--cCCCC-cceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 466666664 46678877533221 11110 00112222222 46666666643 4677888887642
Q ss_pred -Cceeecce-eEEEEcCCCCCcEEEEecCCC-----eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC
Q 018700 203 -TNSIEHAH-VRNVDYDTKKKHLLVTAADES-----GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275 (351)
Q Consensus 203 -~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 275 (351)
+..+.... -..++.- ++. +++.|+.|+ +|..||.++ .+ ...+..-..+...+.....+..+.+.|+.|+
T Consensus 458 ~~~~M~~~R~~~g~a~~-~~~-iYvvGG~~~~~~~~~VE~ydp~~-~~-W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVL-NGK-IYVVGGFDGTSALSSVERYDPET-NQ-WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred ecCCcccccccceEEEE-CCE-EEEECCccCCCccceEEEEcCCC-Cc-eeEcccCccccccccEEEECCEEEEEecccC
Confidence 22222222 2223332 343 788888776 377788775 22 2222211222222222222227788888776
Q ss_pred -----eEEEEEcCC
Q 018700 276 -----TVNLWLVST 284 (351)
Q Consensus 276 -----~i~iwd~~~ 284 (351)
+|..||..+
T Consensus 534 ~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 534 NNNLNTVECYDPET 547 (571)
T ss_pred ccccceeEEcCCCC
Confidence 455666554
No 442
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.24 E-value=5.2 Score=37.79 Aligned_cols=119 Identities=9% Similarity=0.155 Sum_probs=59.6
Q ss_pred CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee------ccccceeEEEecCCCCCcEEE
Q 018700 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD------AHVGKINCVLWWSSGRHDKLV 138 (351)
Q Consensus 65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~ 138 (351)
.+.+-.++|..-+..+..+|.-|+.|.-|.|............... .+..+. .|-..++.+.|.-++.. ++.
T Consensus 16 sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F-~ip~f~dkl~s~~hf~~~~~~~f~~~~gD-ii~ 93 (1243)
T COG5290 16 SGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRF-EIPFFPDKLLSFKHFHVLTFEYFLIDEGD-IIH 93 (1243)
T ss_pred CCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEe-ccCCcchHhhhhhhhhhhheeeEEecCCc-EEE
Confidence 3566677787667777777666676666888776632211100000 000111 23333333433333221 111
Q ss_pred EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018700 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (351)
Q Consensus 139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 196 (351)
.+.|....+........ ....|.+.+|+.|.+.+.....+..|.++|
T Consensus 94 -------~~~dp~p~e~~~eivG~----v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 94 -------LVNDPTPAELEMEIVGK----VSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred -------EEcCCCcccchhhhhcc----ccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 12222211111222221 233688889999999887777777887765
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.11 E-value=7 Score=33.49 Aligned_cols=214 Identities=12% Similarity=0.107 Sum_probs=106.6
Q ss_pred cceeEEEecCCCCCcEEEEecCCc------EEEEEcCCCC-CCcccccc------cccC-----cccceeeeEECCCCCc
Q 018700 121 GKINCVLWWSSGRHDKLVSIDEEN------IFLWSLDCSN-KNAQVQSK------QSSG-----MLHYLSGGAWDPHDVN 182 (351)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~~d~~------v~iwd~~~~~-~~~~~~~~------~~~~-----~~~~v~~~~~~~~~~~ 182 (351)
+....+.+.+++.. +++-++++. +..+++.... ....+... ...+ -.-...++++.+++.+
T Consensus 20 GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 45677888865543 555566666 6655555311 11110000 0001 0113457788667776
Q ss_pred EEEeecC------CeEEEEEcccCCcCceee----------------cce-eEEEEcCCCCCcEEEEecC-----CC--e
Q 018700 183 AVAATCE------SSVQFWDLRSMGKTNSIE----------------HAH-VRNVDYDTKKKHLLVTAAD-----ES--G 232 (351)
Q Consensus 183 l~~~~~d------~~i~iwd~~~~~~~~~~~----------------~~~-v~~~~~~~~~~~~l~~~~~-----dg--~ 232 (351)
+++.-.+ ..|..++.. ++....+. ... ...++++|+|+ .|++..+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCCccc
Confidence 6665566 788888876 54433331 011 88999999998 4444432 22 1
Q ss_pred -------EEEE--ecccCCcceeEe----eC-----CCCceeEEEecCCCCCeEEEee-----CCCeEEEEEcCCCCCCC
Q 018700 233 -------IHLW--DLRMLKAPIQEL----PG-----HTHWTWAVCCNPEYDGFILSAG-----TDSTVNLWLVSTSNHDE 289 (351)
Q Consensus 233 -------i~i~--d~~~~~~~~~~~----~~-----~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~ 289 (351)
++++ |..+.+.+...+ .. ....++.+.+-+++ .+|+.=- ....++|+.+.......
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l~~at~ 255 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDLSDATD 255 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEcccccc
Confidence 4454 444322223222 21 34678889999998 6555321 24466666554321111
Q ss_pred C--CCcccccCCcccccccceeecc---ccceEEEEEeCC--CCCceEEEeeeCCe
Q 018700 290 L--PSESLVESPNQRANSLLNSYSD---YEDSVYGLAWSS--REPWIFASLSYDGR 338 (351)
Q Consensus 290 ~--~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~~l~s~~~dg~ 338 (351)
. ..............+.+..+.. ....+-+|+|.| +|...|+..++|+.
T Consensus 256 ~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 256 VPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred cccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 0 0000000000011222222211 145678899976 66656777776553
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=3.2 Score=41.33 Aligned_cols=154 Identities=11% Similarity=0.174 Sum_probs=90.4
Q ss_pred cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee--------EECCCCCcEEEeecCC
Q 018700 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--------AWDPHDVNAVAATCES 190 (351)
Q Consensus 119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~l~~~~~d~ 190 (351)
|...-..+-+.|.=.+ +--+-|+.+.+|+.++++....+-. ..+.|..+ .|.|.=+++++.+..-
T Consensus 77 ~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~-----~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ 149 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDG-----LSHTILKVGLVKPKPGVFVPEIQHLLVVATPV 149 (1311)
T ss_pred Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccc-----hhhhheeeeeecCCCCcchhhhheeEEecccc
Confidence 4444445555665442 3335689999999997544433221 12234443 2444445666665556
Q ss_pred eEEEEEcccCCc-------C--ceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEeccc--C--------Cc------
Q 018700 191 SVQFWDLRSMGK-------T--NSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRM--L--------KA------ 243 (351)
Q Consensus 191 ~i~iwd~~~~~~-------~--~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~--------~~------ 243 (351)
.|.++-+.-.+. . ..+.... |.|+....+|+ +++ ++.|| .+|.+-- . .+
T Consensus 150 ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s 225 (1311)
T KOG1900|consen 150 EIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKS 225 (1311)
T ss_pred eEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc-EEE-eecCC--CEEEEEEeccCchhhcccccccCchh
Confidence 666654432211 0 1122112 89999888897 666 45555 4444321 0 00
Q ss_pred -------ceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 244 -------PIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 244 -------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.+-.+. .+..+|..+.....- .++.+-+..|+|.+||+..
T Consensus 226 ~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 226 VLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 011223 466799999998877 8999999999999999986
No 445
>PHA03098 kelch-like protein; Provisional
Probab=91.67 E-value=11 Score=34.87 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCCcEEEeecC------CeEEEEEcccCCc--Cceeecce-eEEEEcCCCCCcEEEEecCC--------CeEEEEecccC
Q 018700 179 HDVNAVAATCE------SSVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRML 241 (351)
Q Consensus 179 ~~~~l~~~~~d------~~i~iwd~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~ 241 (351)
++...+.|+.+ ..+..||+.+.+- ...+..+. -.+++. .++. +++.|+.+ ..+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~- 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGK-IYVIGGISYIDNIKVYNIVESYNPVT- 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCE-EEEECCccCCCCCcccceEEEecCCC-
Confidence 45555566521 4678899876532 11222122 122222 2444 67777643 2388888875
Q ss_pred CcceeEeeC---CCCceeEEEecCCCCCeEEEeeCC-----CeEEEEEcCC
Q 018700 242 KAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST 284 (351)
Q Consensus 242 ~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 284 (351)
.+ ...+.. .......+.+ ++ .+++.|+.+ ..+.+||...
T Consensus 466 ~~-W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 466 NK-WTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred Cc-eeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence 21 222211 1111112222 45 666777654 4677888775
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.15 E-value=1.9 Score=34.40 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=44.5
Q ss_pred cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee----ccccceEEEEEeCCCCCceEEEeeeC
Q 018700 261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY----SDYEDSVYGLAWSSREPWIFASLSYD 336 (351)
Q Consensus 261 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (351)
...+ .+|++.+.+|.+++||+...........- ...+... ......|..+..+.+|. -+++-+ +
T Consensus 19 ~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si---------~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-n 86 (219)
T PF07569_consen 19 ECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSI---------APLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-N 86 (219)
T ss_pred EeCC-CEEEEEeCCCeEEEEECCCCeeccCCccH---------HHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-C
Confidence 3456 78999999999999999983221111000 0000000 03445688899998887 565555 5
Q ss_pred CeEEEeecC
Q 018700 337 GRVVVESVK 345 (351)
Q Consensus 337 g~v~vw~~~ 345 (351)
|..+.|+.+
T Consensus 87 g~~y~y~~~ 95 (219)
T PF07569_consen 87 GDSYSYSPD 95 (219)
T ss_pred CCEEEeccc
Confidence 677888754
No 447
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.13 E-value=0.95 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=20.8
Q ss_pred ccccceeEEEecCCCCCcEEEEecC--CcEEEE
Q 018700 118 AHVGKINCVLWWSSGRHDKLVSIDE--ENIFLW 148 (351)
Q Consensus 118 ~h~~~v~~~~~~~~~~~~~~~~~~d--~~v~iw 148 (351)
.....-....|+|||+.+++++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444567789999999867777666 666665
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.05 E-value=0.28 Score=46.30 Aligned_cols=135 Identities=11% Similarity=0.068 Sum_probs=77.2
Q ss_pred ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC-CCcEEEeecCCeEEEEEccc--CCcCceee----c--ce
Q 018700 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRS--MGKTNSIE----H--AH 210 (351)
Q Consensus 140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~--~~~~~~~~----~--~~ 210 (351)
+..+-+++-+....-. ...+.. +..+.+..++|... -..+. -.-|.+.+||+.- |+....+. . +.
T Consensus 108 ~~~~~vrvaN~~~sm~-~~~l~k---gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs 181 (1283)
T KOG1916|consen 108 GMENGVRVANQEPSMR-HNELAK---GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS 181 (1283)
T ss_pred chhhhhhhccCcchhH-HHHHHh---cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC
Confidence 3456677666553221 112222 23346777777431 12222 2236788898763 43322221 1 11
Q ss_pred -eEEEEcCC---CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE-----------ecCCCCCeEEEeeCCC
Q 018700 211 -VRNVDYDT---KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-----------CNPEYDGFILSAGTDS 275 (351)
Q Consensus 211 -v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~l~s~~~dg 275 (351)
+.-+.|.| +.. ++..+..++.|++....+.. ...+.+|..++..++ .+||| ..++++..||
T Consensus 182 ~~~~V~wcp~~~~~~-~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKV-YICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDG 257 (1283)
T ss_pred Ccceeeecccccccc-eeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCC
Confidence 44555554 333 46667778888888776522 244456777766554 47899 9999999999
Q ss_pred eEEEEEcCC
Q 018700 276 TVNLWLVST 284 (351)
Q Consensus 276 ~i~iwd~~~ 284 (351)
.+++|-+.-
T Consensus 258 ~v~f~Qiyi 266 (1283)
T KOG1916|consen 258 SVGFYQIYI 266 (1283)
T ss_pred ccceeeeee
Confidence 988887764
No 449
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.94 E-value=0.71 Score=25.33 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=26.5
Q ss_pred CCCCcEEEee-cCCeEEEEEcccCCcCceeecce-eEEEEc
Q 018700 178 PHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDY 216 (351)
Q Consensus 178 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~ 216 (351)
|+++.|+++. .++.|.++|..+++.+..+..+. ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5677777765 57899999998877666666443 444433
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.84 E-value=1.5 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018700 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPG 250 (351)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (351)
|+++.++++...++.|.++|..+ .+.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 56776667676789999999976 555666554
No 451
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.61 E-value=15 Score=35.06 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=56.1
Q ss_pred eeEECCCCCcEEEeecCC-----eEEEEEcc---cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018700 173 GGAWDPHDVNAVAATCES-----SVQFWDLR---SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (351)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~-----~i~iwd~~---~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (351)
.++|-|+|..+++-..|| .|.++..+ -|+.-....... +..++|+-... .++ ......+.+|-..+..-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~-vla-v~~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLST-VLA-VAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHH-HHH-HhhcceEEEEEccceEE
Confidence 378999999999876443 45555432 122211222222 67778877665 344 34556899998765321
Q ss_pred ceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018700 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTD 274 (351)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 274 (351)
.++ ....-..+.-+.|+|.....++-.+..
T Consensus 329 YLK-~e~~ip~~s~vkwhpe~~nTl~f~d~~ 358 (1243)
T COG5290 329 YLK-VERQIPGISYVKWHPEEKNTLLFRDGE 358 (1243)
T ss_pred EEE-EeecCCCcceeeeccccCcEEEEecCC
Confidence 121 122345567788999775555544433
No 452
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.42 E-value=1.3 Score=23.83 Aligned_cols=32 Identities=3% Similarity=0.114 Sum_probs=20.9
Q ss_pred eCCCCceeEEEecCCCCCeEEEeeCC--CeEEEE
Q 018700 249 PGHTHWTWAVCCNPEYDGFILSAGTD--STVNLW 280 (351)
Q Consensus 249 ~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iw 280 (351)
...........|+|+|+.++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455677889999996666666666 666665
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.09 E-value=3.4 Score=36.25 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=88.8
Q ss_pred cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc-ee---ecc---e-eE-EEEcCCCCCcEEEEecCCCeEEEE-ec
Q 018700 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SI---EHA---H-VR-NVDYDTKKKHLLVTAADESGIHLW-DL 238 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~---~~~---~-v~-~~~~~~~~~~~l~~~~~dg~i~i~-d~ 238 (351)
..+..+-..|+++.+.+-+. ..+.++++.+..... .+ ..+ | |. .+..-..|. -+.++++||-|.-| |.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLVSQWFDV 298 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCceeeeeee
Confidence 36777888999998887665 688888887643211 11 112 1 22 222223343 56678889888776 66
Q ss_pred ccCCcce----eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc
Q 018700 239 RMLKAPI----QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE 314 (351)
Q Consensus 239 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
+...++. +.++-...++.-+.=... .+-+++-...|++.++.... .+.+..-.. -
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~-------------------~~~lL~~~~-~ 357 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTS-------------------EKLLLFERA-Y 357 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeeccc-------------------Ccceehhhh-h
Confidence 6533321 112111223333322222 25677888888888876655 232222112 2
Q ss_pred ceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018700 315 DSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS 349 (351)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 349 (351)
..+.-+++||.+. ++++- ..|.++++.+++--|
T Consensus 358 ~~~~~~~~Sp~~~-~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 358 QAPQLVAMSPNQA-YLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred cCcceeeeCcccc-hheee-cCCceEEEEecCCCC
Confidence 2466789999988 45443 357899988875443
No 454
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.02 E-value=16 Score=33.80 Aligned_cols=60 Identities=8% Similarity=-0.109 Sum_probs=34.4
Q ss_pred cEEEEEcCCCCCCcccccccccCc----ccceeeeEECCCCC---cEEEeecCCeEEEEEcccCCcC
Q 018700 144 NIFLWSLDCSNKNAQVQSKQSSGM----LHYLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKT 203 (351)
Q Consensus 144 ~v~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 203 (351)
.|.-.|+++++........++.-+ .....-+....+++ .++.+..+|.+++.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 566667777665544433221111 01112222334555 5667889999999999998864
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.01 E-value=3.3 Score=36.36 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=93.4
Q ss_pred eeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC-ccccee-eeEECCCCCcEEEeec
Q 018700 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-MLHYLS-GGAWDPHDVNAVAATC 188 (351)
Q Consensus 111 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~ 188 (351)
+.+..+..--..|..+-..|+|+.+++.++ .++.++++.+.....+.+....++ ....|+ .+..-..+..++++..
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 333344445567778889999996555554 678888887543222222111111 112333 2333345667888889
Q ss_pred CCeEEEE-EcccCCcCceeecceeEEEEcC--------CC-CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018700 189 ESSVQFW-DLRSMGKTNSIEHAHVRNVDYD--------TK-KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV 258 (351)
Q Consensus 189 d~~i~iw-d~~~~~~~~~~~~~~v~~~~~~--------~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 258 (351)
||.|.-| |.+.+.. ..+. |+....+. |+ .+.-+++-..+|++.++.... .+++. ++.--..+.-+
T Consensus 289 dG~vsQWFdvr~~~~-p~l~--h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL-~~~~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQ-PHLN--HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLL-FERAYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCC-Ccce--eeeccccCcccceeeccccccceEEEEcCCCceeeeeccc-Cccee-hhhhhcCccee
Confidence 9988776 5554322 1111 12222222 21 222566677788888777554 22222 22222356778
Q ss_pred EecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018700 259 CCNPEYDGFILSAGTDSTVNLWLVSTS 285 (351)
Q Consensus 259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~ 285 (351)
+++|.+ .++++-. .|.|+++.+++.
T Consensus 364 ~~Sp~~-~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 364 AMSPNQ-AYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred eeCccc-chheeec-CCceEEEEecCC
Confidence 999999 7777544 567999988873
No 456
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.00 E-value=9 Score=34.21 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=25.2
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
..|..++..+.. +.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 348899999888 9999999999999999986
No 457
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.57 E-value=8.8 Score=30.25 Aligned_cols=119 Identities=11% Similarity=0.123 Sum_probs=65.9
Q ss_pred EEEEecCCCeEEEEeccc-CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC------eEEEE-EcCCCCCCCCCCc-
Q 018700 223 LLVTAADESGIHLWDLRM-LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS------TVNLW-LVSTSNHDELPSE- 293 (351)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~~~~~~~~~~- 293 (351)
+++ +.....|.+|++.. ..+++.+|.. -+.|..+.++..| .||+|--.+. .+|+| +.+....+..+..
T Consensus 31 Lfv-a~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 31 LFV-AASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred EEE-EcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 444 46667899999983 3456666663 4889999999999 9999874422 56665 3333211111111
Q ss_pred -ccc---cCC-cccccccceeec-cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 294 -SLV---ESP-NQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 294 -~~~---~~~-~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
... ..+ .......+.... +-+.++.+++..|-... |+.|+ ++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEE
Confidence 111 000 001111122221 22456788888885442 44444 56888887753
No 458
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.35 E-value=3.8 Score=36.15 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=51.2
Q ss_pred cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------eEEEEcCCC--------------CCcEEEEec
Q 018700 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------VRNVDYDTK--------------KKHLLVTAA 228 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v~~~~~~~~--------------~~~~l~~~~ 228 (351)
..+.+++.+|.+++.++...-|.|.++|+.++..++..+.-. +....-... ..++++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 457788999998877776667999999999988777665211 111111111 112344456
Q ss_pred CCCeEEEEecccCCcceeEee
Q 018700 229 DESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~ 249 (351)
.-|.|.||.++. +..+..+.
T Consensus 388 rRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCC-CCEEEEEE
Confidence 678899999887 44454443
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.18 E-value=23 Score=34.53 Aligned_cols=170 Identities=10% Similarity=0.099 Sum_probs=95.9
Q ss_pred cCCcceeeeeeC---CC----CCceEEEEeecCCcceEEEEEcc------cccCCCCCCcceeeeeeecc---ccceeEE
Q 018700 63 SHPNEIWDLSSC---PF----DQRIFSTVFSTGESYGAAIWQIP------ELYGQLNSPQLERIAALDAH---VGKINCV 126 (351)
Q Consensus 63 ~h~~~v~~i~~~---~~----~~~l~~~~~~~~~d~~i~vw~~~------~~~~~~~~~~~~~~~~~~~h---~~~v~~~ 126 (351)
.-..+|..|+|. .. ..+|++- ....+.|+... ........-...++..+..+ ..+...+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-----t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv 151 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-----TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADV 151 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-----cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceE
Confidence 456788899997 21 2344442 45567777722 11111111122444455322 3467889
Q ss_pred EecCCCCCcEEEEecCCcEEEEEcCCCCCCc----ccccccc------cCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018700 127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNA----QVQSKQS------SGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (351)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~----~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 196 (351)
+|+|.....+++-...|...||++....+.. ....... ......-..+.|.++-..|++.+ ...+.++|
T Consensus 152 ~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d 230 (765)
T PF10214_consen 152 AFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLID 230 (765)
T ss_pred EeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEE
Confidence 9999876646666788999999993211111 1110000 01112345678988777777765 45788999
Q ss_pred cccCCcCceeecc---e-eEEEEcCCCCCc-EEEEecCCCeEEEEeccc
Q 018700 197 LRSMGKTNSIEHA---H-VRNVDYDTKKKH-LLVTAADESGIHLWDLRM 240 (351)
Q Consensus 197 ~~~~~~~~~~~~~---~-v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 240 (351)
+++......+... . |..+.-+|.... .|+-. ...|...|+..
T Consensus 231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 9987653312212 1 888888887332 33322 25777788776
No 460
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.14 E-value=3.5 Score=27.38 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=34.2
Q ss_pred eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018700 186 ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (351)
Q Consensus 186 ~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (351)
+..+|.+..||+.+++....+..-. .+.+++++++.+++++-.....|.-|-+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 3446888899999876544444333 8999999999977776665555554443
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=18 Score=36.41 Aligned_cols=151 Identities=10% Similarity=0.083 Sum_probs=82.2
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeee--------eCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLS--------SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE 111 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~--------~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~ 111 (351)
-|+.+.+|++..++.... +.+-...|..+. |.|.=++++.. +..-.|.++-+.-...........
T Consensus 97 iDn~L~lWny~~~~e~~~---~d~~shtIl~V~LvkPkpgvFv~~IqhlLvv----aT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAE---YDGLSHTILKVGLVKPKPGVFVPEIQHLLVV----ATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred eCCeEEEEEcCCCCcccc---ccchhhhheeeeeecCCCCcchhhhheeEEe----cccceEEEEEEEeccccCcccccc
Confidence 578999999998554322 223334444443 33444444444 233345665554211100000111
Q ss_pred eeeeeeccccceeEEEecCCCCCcEEEEecCCcEE--EEEcCCC---CCCccc-------------ccccccCcccceee
Q 018700 112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF--LWSLDCS---NKNAQV-------------QSKQSSGMLHYLSG 173 (351)
Q Consensus 112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~--iwd~~~~---~~~~~~-------------~~~~~~~~~~~v~~ 173 (351)
...++......|.|+....+|+ ++.++.||.|+ +|....+ .++.++ +......+.++|..
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGR--IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGR--IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred cceeeecCCceEEEEEeccCCc--EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 1123333456789999888888 66667777554 2222211 001110 01111244568999
Q ss_pred eEECCCCCcEEEeecCCeEEEEEccc
Q 018700 174 GAWDPHDVNAVAATCESSVQFWDLRS 199 (351)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~iwd~~~ 199 (351)
++....-..+.+-+..++|.+||+..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 99987777777888999999999976
No 462
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.11 E-value=27 Score=33.98 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=48.8
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc--cccccceeeccccceEEEEEeCCCCCceE
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ--RANSLLNSYSDYEDSVYGLAWSSREPWIF 330 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 330 (351)
..|.++....-+ .+++..-.||+|.++|..+....... ...+..+.. ...+.-..+. +-..+..++|||++. .+
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~-~~~~~~~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~c-~~ 335 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNET-RTNGEPPNTVTSLFQAGFHFP-CIQPPLHVAFSPTMC-SL 335 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhccc-ccccCCccccccccccccccc-cCCCCceEEECcccc-eE
Confidence 446667766666 78999999999999999874322211 000000000 0001111221 122456799999988 67
Q ss_pred EEeeeCCeEE
Q 018700 331 ASLSYDGRVV 340 (351)
Q Consensus 331 ~s~~~dg~v~ 340 (351)
+.-..+|.+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 7778888855
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.01 E-value=12 Score=29.62 Aligned_cols=38 Identities=8% Similarity=0.304 Sum_probs=28.4
Q ss_pred CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC
Q 018700 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH 134 (351)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 134 (351)
....|.+|++.. ...+++.++. .-+.|..+.++..|++
T Consensus 36 ~g~~Vev~~l~~-------~~~~~~~~F~-Tv~~V~~l~y~~~GDY 73 (215)
T PF14761_consen 36 SGCKVEVYDLEQ-------EECPLLCTFS-TVGRVLQLVYSEAGDY 73 (215)
T ss_pred CCCEEEEEEccc-------CCCceeEEEc-chhheeEEEeccccce
Confidence 455799999882 2445666663 4488999999999995
No 464
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=87.90 E-value=9.8 Score=32.75 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=59.2
Q ss_pred cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--cce----eEEEEcCCCCCcEEE-----------------
Q 018700 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH----VRNVDYDTKKKHLLV----------------- 225 (351)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~----v~~~~~~~~~~~~l~----------------- 225 (351)
.....++|...+..|+++..---+..-+...+....... .+. .+.+..+++|. ++.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeee
Confidence 367789999988667776543334444444433111111 111 56666666554 322
Q ss_pred EecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe-eCC-CeEEEE
Q 018700 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-GTD-STVNLW 280 (351)
Q Consensus 226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d-g~i~iw 280 (351)
.+..+|.+.-||..+ +..+.+...-.-.+.++.||++ .+++.+ ..- ...+.|
T Consensus 194 ~g~~~GRl~~YD~~t--K~~~VLld~L~F~NGlaLS~d~-sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPST--KVTKVLLDGLYFPNGLALSPDG-SFVLVAETTTARIKRYW 247 (376)
T ss_pred cCCCccceEEecCcc--cchhhhhhcccccccccCCCCC-CEEEEEeeccceeeeeE
Confidence 233456777777664 2344444344566889999999 555544 333 344556
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.81 E-value=8.4 Score=27.80 Aligned_cols=107 Identities=9% Similarity=0.103 Sum_probs=64.5
Q ss_pred eEECCCCCcEEEeecCCeEEEEEcccCC--------cCceeecce-eEEEEcCC----CCCcEEEEecCCCeEEEEeccc
Q 018700 174 GAWDPHDVNAVAATCESSVQFWDLRSMG--------KTNSIEHAH-VRNVDYDT----KKKHLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~-v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~ 240 (351)
-.|....+.|++++.-|+|.|++..... .+..+...+ |++++--+ ++...|+.|+. ..+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 3566667789999999999999877432 233333333 66664433 22336776665 5789999987
Q ss_pred CCcceeEeeCCCCceeEEEecCC---CCCeEEEeeCCCeEEEEEcCC
Q 018700 241 LKAPIQELPGHTHWTWAVCCNPE---YDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~ 284 (351)
...... +.-...|+++.+-.- .+.+++. +.+..|.-||..-
T Consensus 83 N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G 126 (136)
T PF14781_consen 83 NSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEG 126 (136)
T ss_pred Cchhhh--hhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCC
Confidence 443222 223466777776322 2144444 4466777777764
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.30 E-value=16 Score=30.60 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=24.8
Q ss_pred eEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 316 SVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 316 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
...+++.+++|. ++.+--..+.|..|+...
T Consensus 187 ~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 QSDGMAIDPNGN-LYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp SECEEEEETTTE-EEEEECCCTEEEEEETTT
T ss_pred CCceEEECCCCc-EEEecCCCCeEEEEeCCC
Confidence 456788889887 788888899999999876
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.06 E-value=3.4 Score=38.32 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=27.2
Q ss_pred ceeeeEECC----CCCcEEEeecCCeEEEEEcccCCcCcee
Q 018700 170 YLSGGAWDP----HDVNAVAATCESSVQFWDLRSMGKTNSI 206 (351)
Q Consensus 170 ~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 206 (351)
....++.++ +..++++.+.|+.+++||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 345556665 6778889999999999999999884443
No 468
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.47 E-value=15 Score=36.76 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=71.8
Q ss_pred ceEEEEEcccccCCCCCCcc-eeeee--eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018700 91 YGAAIWQIPELYGQLNSPQL-ERIAA--LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (351)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~-~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 167 (351)
|.+.|+|+-+.-+....|.. ..++. .+..+++|..++= -+|. ++ .+....|.||+++.......+-... .
T Consensus 1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~--l~-~~~GqKI~v~~l~r~~~ligVaFiD---~ 1137 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGH--LL-SSQGQKIIVRKLDRDSELIGVAFID---L 1137 (1366)
T ss_pred ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccE--EE-EccCcEEEEEEeccCCcceeeEEec---c
Confidence 67999998652221111111 11111 1345677777653 3444 44 4445789999995432221111100 0
Q ss_pred ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee-ecce----eEEEEcCCCCCc-EEEEecCCCeEEEEecc
Q 018700 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHAH----VRNVDYDTKKKH-LLVTAADESGIHLWDLR 239 (351)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~----v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 239 (351)
+++-.+...-.++|+.|.--..|.+.-.........+ .... +.++.|--+|.+ .++++..+++|++|-..
T Consensus 1138 --~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1138 --PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred --ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 2222222223456666665556666554432222222 1111 888888777764 36677889999988754
No 469
>PHA02790 Kelch-like protein; Provisional
Probab=86.42 E-value=20 Score=32.76 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=31.1
Q ss_pred CCCcEEEeecC--CeEEEEEcccCC--cCceeecce--eEEEEcCCCCCcEEEEecCCC---eEEEEeccc
Q 018700 179 HDVNAVAATCE--SSVQFWDLRSMG--KTNSIEHAH--VRNVDYDTKKKHLLVTAADES---GIHLWDLRM 240 (351)
Q Consensus 179 ~~~~l~~~~~d--~~i~iwd~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 240 (351)
++...++|+.+ ..+..||..+.+ ....+.... ...++. ++. +.+.|+.++ .+..||.++
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCC
Confidence 45555666643 457788876542 122222111 222222 455 777777543 467788764
No 470
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=85.62 E-value=29 Score=31.88 Aligned_cols=234 Identities=14% Similarity=0.094 Sum_probs=110.1
Q ss_pred CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecC-CcceeeeeeCCCC-CceEEEEeecCCcceEEEEEcccc
Q 018700 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH-PNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPEL 101 (351)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~ 101 (351)
...+..++++++ ++|.++.+.+..++..+... ..+. .....++.+..++ ..|+++. ...|+.+.-|...
T Consensus 218 ~~~~~~~~lL~~----e~G~l~~l~l~~~~~~i~i~-~~g~~~~~~s~l~~l~~g~d~lf~gs--~~gds~l~~~~~~-- 288 (504)
T PF10433_consen 218 YDKDGDRILLQD----EDGDLYLLTLDNDGGSISIT-YLGTLCSIASSLTYLKNGGDYLFVGS--EFGDSQLLQISLS-- 288 (504)
T ss_dssp SSTTSSEEEEEE----TTSEEEEEEEEEEEEEEEEE-EEEE--S-ESEEEEESTT--EEEEEE--SSS-EEEEEEESE--
T ss_pred ecCCCCEEEEEe----CCCeEEEEEEEECCCeEEEE-EcCCcCChhheEEEEcCCCEEEEEEE--ecCCcEEEEEeCC--
Confidence 344556677664 67899988888765422222 2232 4455667776655 2444442 3445566666543
Q ss_pred cCCCCCCcceeeeeeeccccceeEEEecCC---CC-------CcEEEE--ecCCcEEEEEcCCCCCCcccccccccCccc
Q 018700 102 YGQLNSPQLERIAALDAHVGKINCVLWWSS---GR-------HDKLVS--IDEENIFLWSLDCSNKNAQVQSKQSSGMLH 169 (351)
Q Consensus 102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~-------~~~~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 169 (351)
..+.+..+ ..-++|.+++..+. +. .++.++ +.+|.+++..-.-+-...........+ ..
T Consensus 289 -------~l~~~~~~-~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~ 359 (504)
T PF10433_consen 289 -------NLEVLDSL-PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VT 359 (504)
T ss_dssp -------SEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EE
T ss_pred -------CcEEEEec-cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ce
Confidence 45666666 34578888887532 12 323333 357889887543111100111112222 33
Q ss_pred ceeeeEECCC-CCcEEEeecCCeEEEEEcc---cCCcCc-----eeecce--eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018700 170 YLSGGAWDPH-DVNAVAATCESSVQFWDLR---SMGKTN-----SIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (351)
Q Consensus 170 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~---~~~~~~-----~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (351)
.++.+..... +.+|+.+. ...-+++.+. ..+.+. .+.... +.+-.+. ++ .++=-.. ..|++.+.
T Consensus 360 ~iW~l~~~~~~~~~lv~S~-~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~--~ivQVt~-~~i~l~~~ 434 (504)
T PF10433_consen 360 GIWTLKLSSSDHSYLVLSF-PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG--RIVQVTP-KGIRLIDL 434 (504)
T ss_dssp EEEEE-SSSSSBSEEEEEE-SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT--EEEEEES-SEEEEEES
T ss_pred EEEEeeecCCCceEEEEEc-CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC--eEEEEec-CeEEEEEC
Confidence 5555554432 34455544 3445566654 222221 111111 3333332 22 2332222 35888887
Q ss_pred ccCCcceeEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 239 RMLKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 239 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.. .+....... ....|...+... .+++.+-.++.+.++.+..
T Consensus 435 ~~-~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~ 477 (504)
T PF10433_consen 435 ED-GKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDD 477 (504)
T ss_dssp SS-TSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEET
T ss_pred CC-CeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEEC
Confidence 65 444444432 344566665554 4566666678888888876
No 471
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.00 E-value=19 Score=29.24 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=59.7
Q ss_pred eeeEECCCCCcEEEeec---CCeEEEEEcccC--CcC-----ceeecce-eEEEEcCCCCCcEEEEecCC-CeEEEEecc
Q 018700 172 SGGAWDPHDVNAVAATC---ESSVQFWDLRSM--GKT-----NSIEHAH-VRNVDYDTKKKHLLVTAADE-SGIHLWDLR 239 (351)
Q Consensus 172 ~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~--~~~-----~~~~~~~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~ 239 (351)
.+-.+.+||+.+.+|+. ...+++++.... .+. ..+..++ -.+...-|||+ +|+.|+.. .+..+|..+
T Consensus 70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~-vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGR-VLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCC-EEEEeCcCCCcccccCCc
Confidence 33467889998888863 346888886541 111 1123233 44555668998 56666654 355555543
Q ss_pred cCCcceeEe--eCC-----C-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 240 MLKAPIQEL--PGH-----T-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 240 ~~~~~~~~~--~~~-----~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
........+ ... . ..--.+...|+| ++++.+..+. .|||...
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKT 198 (243)
T ss_pred cCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCC
Confidence 211111111 100 0 111235567999 8888888764 4668776
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.43 E-value=6.2 Score=36.64 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=23.9
Q ss_pred ceeEEEecC---CCCCeEEEeeCCCeEEEEEcCCCCC
Q 018700 254 WTWAVCCNP---EYDGFILSAGTDSTVNLWLVSTSNH 287 (351)
Q Consensus 254 ~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~ 287 (351)
.+..+++++ ++..++++.+.|+++|+||+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 345555655 2338999999999999999998543
No 473
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=38 Score=32.17 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=28.8
Q ss_pred eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018700 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (351)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (351)
+..+..+|+.+ .|+-=...|.|.+-+... .+.+..+.
T Consensus 219 ~~ki~VS~n~~-~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRR-FLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred EEEEEEcCCcc-eEEEEecCCcEEEEecch-hhhhhccC
Confidence 88899999998 677778889999988775 55555544
No 474
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.21 E-value=26 Score=29.39 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=26.2
Q ss_pred CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
.....++++++| .++++--..+.|..|+...
T Consensus 186 ~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 186 SQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -SECEEEEETTT-EEEEEECCCTEEEEEETTT
T ss_pred CCCceEEECCCC-cEEEecCCCCeEEEEeCCC
Confidence 456778899998 8888999999999999986
No 475
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.33 E-value=33 Score=28.65 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=54.6
Q ss_pred CeEEEEEcccCCcCceee--cceeEEEEcCCCCCcEEEEec------CCCeEEEEecccCCcceeEeeC-----CCCcee
Q 018700 190 SSVQFWDLRSMGKTNSIE--HAHVRNVDYDTKKKHLLVTAA------DESGIHLWDLRMLKAPIQELPG-----HTHWTW 256 (351)
Q Consensus 190 ~~i~iwd~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~ 256 (351)
..|++||..+.+-...-. .+.|..+.|..+.+ +++.|. ....+..||... . ....+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~-~-~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN-Q-TWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC-C-eeeecCCcccccCCCcEE
Confidence 468999987654222111 13399999986665 777665 356788999875 2 3444443 236788
Q ss_pred EEEecC-CCCCeEEEee-CCC--eEEEEEcCC
Q 018700 257 AVCCNP-EYDGFILSAG-TDS--TVNLWLVST 284 (351)
Q Consensus 257 ~~~~~~-~~~~~l~s~~-~dg--~i~iwd~~~ 284 (351)
.+.+.. ++..+.+.|. .++ .|..||-..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 877743 3324554444 333 566776554
No 476
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=79.49 E-value=9.7 Score=25.15 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018700 316 SVYGLAWSSREPWIFASLSYDGRVVVESVKP 346 (351)
Q Consensus 316 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 346 (351)
..++|..+|+++.+.++....+.|++|+..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3578999999997777778899999998764
No 477
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=78.76 E-value=60 Score=30.72 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=96.2
Q ss_pred eeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-cccceeEEEecCC--CCCcEEEE-ecCCcEEE
Q 018700 72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSS--GRHDKLVS-IDEENIFL 147 (351)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~--~~~~~~~~-~~d~~v~i 147 (351)
.++|+...+-.+. +...|.-|-+. |+.+.+-.+.- .+..|.|+..... +..++++| ...+.-++
T Consensus 34 ~~s~~sn~IdiGI----S~S~ISsYIi~--------PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~l 101 (670)
T PF10395_consen 34 DFSPDSNQIDIGI----SGSAISSYIIK--------PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKL 101 (670)
T ss_pred ccCCCCceEEEEe----ccchhhheecC--------CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEE
Confidence 6677766655543 22244445443 34455544432 2445666654332 23345566 44444454
Q ss_pred EEcCCC----------CCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eeecce-----
Q 018700 148 WSLDCS----------NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEHAH----- 210 (351)
Q Consensus 148 wd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~----- 210 (351)
-.+..+ ......... .....+.++.+.++++.+++...+|.|.+||...+.... .....+
T Consensus 102 l~i~~~~~~~~~~~~~~e~~~~~~~---kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ 178 (670)
T PF10395_consen 102 LLIERKVGSTEDGTVNSETTNEFEL---KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVS 178 (670)
T ss_pred EEEEccCccccccccCccccceEEE---EcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccccee
Confidence 444432 001111111 123478899999999999999999999999993322111 222111
Q ss_pred ----eEEEEcCCCCCcEEEEec-CC--CeEEEEecccCCcceeEee---CCCCceeEEEecC-CCCCeEEEeeCCCeEEE
Q 018700 211 ----VRNVDYDTKKKHLLVTAA-DE--SGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNP-EYDGFILSAGTDSTVNL 279 (351)
Q Consensus 211 ----v~~~~~~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~i 279 (351)
|.....-....++++.+. .+ -..+++.+......+.++. .+........|.- +| . |+-- .++.|.+
T Consensus 179 ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G-~-LY~l-~~~~i~~ 255 (670)
T PF10395_consen 179 YSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFG-K-LYQL-SKKTISS 255 (670)
T ss_pred hhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCC-E-EEEE-eCCEEEE
Confidence 222221112233333333 12 3577888733244444443 1222222233322 34 2 3322 6778999
Q ss_pred EEcCC
Q 018700 280 WLVST 284 (351)
Q Consensus 280 wd~~~ 284 (351)
|++..
T Consensus 256 ysip~ 260 (670)
T PF10395_consen 256 YSIPN 260 (670)
T ss_pred EEcCC
Confidence 99976
No 478
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=78.54 E-value=60 Score=30.55 Aligned_cols=202 Identities=12% Similarity=0.095 Sum_probs=105.5
Q ss_pred ceeeeeeCCCCCceEEEE-eecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC--
Q 018700 67 EIWDLSSCPFDQRIFSTV-FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE-- 143 (351)
Q Consensus 67 ~v~~i~~~~~~~~l~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~-- 143 (351)
.+-.++.|||++.++-+. ..|...-++++-|+. ++..+-. .-.+....++|.++++.++.+...++
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~---------tg~~~~d--~i~~~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLA---------TGEELPD--EITNTSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecc---------cccccch--hhcccccceEEecCCCeEEEEEEcCCCC
Confidence 556778899998887654 224455678999988 3332211 12234567899999997666654443
Q ss_pred cEEEE--EcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---CCeEEEEEcccCCcCceeec----ceeEEE
Q 018700 144 NIFLW--SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEH----AHVRNV 214 (351)
Q Consensus 144 ~v~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~----~~v~~~ 214 (351)
.=++| .+.+......++.... . ..-..++.-+...++|+.... ...+++.+............ ++-..+
T Consensus 199 p~kv~~h~~gt~~~~d~lvyeE~-d-~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~ 276 (682)
T COG1770 199 PDKVWRHRLGTPGSSDELVYEEK-D-DRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSV 276 (682)
T ss_pred cceEEEEecCCCCCcceEEEEcC-C-CcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEee
Confidence 22344 3433222333222111 1 112334444556677776543 35778888776543322221 112222
Q ss_pred EcCCCCCcEEEEecCCC-eEEEEeccc--CCcceeEeeCCCCceeEEEecCCCCCeEEEe-eCCC--eEEEEEcCC
Q 018700 215 DYDTKKKHLLVTAADES-GIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGFILSA-GTDS--TVNLWLVST 284 (351)
Q Consensus 215 ~~~~~~~~~l~~~~~dg-~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg--~i~iwd~~~ 284 (351)
.- .+..+++-...+| ..+|+.... ....-+.+..|...+.--.|+--. .+|+.. ..++ .|++++.+.
T Consensus 277 eh--~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~ 349 (682)
T COG1770 277 EH--GGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKT 349 (682)
T ss_pred ee--cCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeec-cEEEEEecccCCceEEEEecCC
Confidence 22 2333455455555 566665443 112334555677666655566555 444444 3333 677778765
No 479
>PRK13684 Ycf48-like protein; Provisional
Probab=78.51 E-value=43 Score=28.87 Aligned_cols=149 Identities=8% Similarity=-0.007 Sum_probs=77.1
Q ss_pred ceeeeEECCCCCcEEEeecCCeEEEEEcccC-CcCceee--cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce
Q 018700 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSIE--HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~--~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 245 (351)
.+.++.+.|++.+++ .+..|.+.. ..+.+ +.-.... ... +..+.+.++++ +++++ ..|.+++=.... +..-
T Consensus 174 ~~~~i~~~~~g~~v~-~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~-G~sW 248 (334)
T PRK13684 174 VVRNLRRSPDGKYVA-VSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDD-LESW 248 (334)
T ss_pred eEEEEEECCCCeEEE-EeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCC-CCcc
Confidence 688899999876554 444555542 11122 2111121 122 88999999997 55544 557665322221 2222
Q ss_pred eEeeC----CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018700 246 QELPG----HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321 (351)
Q Consensus 246 ~~~~~----~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 321 (351)
..... ....+..+.+.|++ .+++ ++.+|.+. .....+. .++.+.....-....+.+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~-~S~d~G~----------------tW~~~~~~~~~~~~~~~~~ 309 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPG-EIWA-GGGNGTLL-VSKDGGK----------------TWEKDPVGEEVPSNFYKIV 309 (334)
T ss_pred ccccCCccccccceeeEEEcCCC-CEEE-EcCCCeEE-EeCCCCC----------------CCeECCcCCCCCcceEEEE
Confidence 21111 12357888999877 5555 45567554 2222200 0222211111223577788
Q ss_pred eCCCCCceEEEeeeCCeEEEeec
Q 018700 322 WSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 322 ~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
|..++. .++ .+..|.|--|+-
T Consensus 310 ~~~~~~-~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 310 FLDPEK-GFV-LGQRGVLLRYVG 330 (334)
T ss_pred EeCCCc-eEE-ECCCceEEEecC
Confidence 776666 444 556788877763
No 480
>PRK13613 lipoprotein LpqB; Provisional
Probab=78.28 E-value=61 Score=30.54 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=80.2
Q ss_pred ceeeeEECCCCCcEEEeecCC-eEEEEEcccCCc----Cceeecce-eEEEEcCCCCCcEEEEec--CCC--eEEEEecc
Q 018700 170 YLSGGAWDPHDVNAVAATCES-SVQFWDLRSMGK----TNSIEHAH-VRNVDYDTKKKHLLVTAA--DES--GIHLWDLR 239 (351)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~----~~~~~~~~-v~~~~~~~~~~~~l~~~~--~dg--~i~i~d~~ 239 (351)
.+.+.+.++++..++....++ .+++..+..+.. ......+. +..-.|.+++. +-+.. .++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~--vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGD--LWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCCC--EEEecCCCCCceEEEEEcC-
Confidence 567888999998887776555 566655433332 12222233 77778888774 33332 222 2555542
Q ss_pred cCCcceeEee--CCC-CceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc
Q 018700 240 MLKAPIQELP--GHT-HWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE 314 (351)
Q Consensus 240 ~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
. +.+. .+. ... ..|..+..++||-+..+.... .+.|.+=-+........ .-..++..-....
T Consensus 441 ~-G~~~-~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~-----------~l~~~~~l~~~l~ 507 (599)
T PRK13613 441 D-GEPV-EVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVV-----------SVEEFRSLAPELE 507 (599)
T ss_pred C-CcEE-EeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcE-----------EeeccEEeccCCC
Confidence 1 3222 121 222 379999999999444443332 34555544432100000 0011111112223
Q ss_pred ceEEEEEeCCCCCceEEEe-eeCCeEEEeec
Q 018700 315 DSVYGLAWSSREPWIFASL-SYDGRVVVESV 344 (351)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~-~~dg~v~vw~~ 344 (351)
.+.+++|..++. +++.+ ..++...+|-+
T Consensus 508 -~v~~~~W~~~~s-L~Vlg~~~~~~~~v~~v 536 (599)
T PRK13613 508 -DVTDMSWAGDSQ-LVVLGREEGGVQQARYV 536 (599)
T ss_pred -ccceeEEcCCCE-EEEEeccCCCCcceEEE
Confidence 489999999887 66644 23334445543
No 481
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.07 E-value=39 Score=28.22 Aligned_cols=257 Identities=10% Similarity=0.050 Sum_probs=126.0
Q ss_pred CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018700 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (351)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 119 (351)
....+++++++...++.+...+.. .+--.++..+ |++..++ .-|.-+.+.|+... . .......+...
T Consensus 104 ~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vs--Gn~aYVa----dlddgfLivdvsdp----s--sP~lagrya~~ 170 (370)
T COG5276 104 WSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVS--GNYAYVA----DLDDGFLIVDVSDP----S--SPQLAGRYALP 170 (370)
T ss_pred CCCceEEEeccCCCCcceeccccC-CceEEEEEec--CCEEEEe----eccCcEEEEECCCC----C--CceeeeeeccC
Confidence 345567777776665554333221 1222333333 5666554 34666778888731 1 12333344444
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 199 (351)
...-..++.|-+ + ...+..|+-+.+-|+........+-.... ...+.++..+++-.++ .-.+-.+.+-|...
T Consensus 171 ~~d~~~v~ISGn--~-AYvA~~d~GL~ivDVSnp~sPvli~~~n~---g~g~~sv~vsdnr~y~--vvy~egvlivd~s~ 242 (370)
T COG5276 171 GGDTHDVAISGN--Y-AYVAWRDGGLTIVDVSNPHSPVLIGSYNT---GPGTYSVSVSDNRAYL--VVYDEGVLIVDVSG 242 (370)
T ss_pred CCCceeEEEecC--e-EEEEEeCCCeEEEEccCCCCCeEEEEEec---CCceEEEEecCCeeEE--EEcccceEEEecCC
Confidence 444456666644 2 34556788999999986543322221111 1156666666543333 33344466677766
Q ss_pred CCcCceeec---ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE--eeCCCCceeEEEecCCCCCeEEEe
Q 018700 200 MGKTNSIEH---AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--LPGHTHWTWAVCCNPEYDGFILSA 271 (351)
Q Consensus 200 ~~~~~~~~~---~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~ 271 (351)
.+....+.. .. +..+..+ ++ +......+.-+.+.|+.++..+... +.........+... + .++..+
T Consensus 243 ~ssp~~~gsyet~~p~~~s~v~Vs--~~-~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~-~y~yia 316 (370)
T COG5276 243 PSSPTVFGSYETSNPVSISTVPVS--GE-YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--G-NYNYIA 316 (370)
T ss_pred CCCceEeeccccCCcccccceecc--cc-eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--c-CeeEec
Confidence 554444331 11 3323333 33 4555666667777787765443221 11111122333322 2 455555
Q ss_pred eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018700 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 344 (351)
Q Consensus 272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~ 344 (351)
..+ ...+-|... .+......+....+.+.+.+-+.+ ++.+...++-+.+|+.
T Consensus 317 dkn-~g~vV~~s~-------------------~s~m~~~~g~~ti~~s~~v~~~~q-~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 317 DKN-TGAVVDASP-------------------PSMMDKRPGRPTIGQSCDVSVDTQ-IIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCC-ceEEEeCCC-------------------hhhcccccCcceEeeecceEEEee-EEEEeecCCCEEEEEe
Confidence 544 444555544 111111112112233333444455 6777788888888875
No 482
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=77.51 E-value=43 Score=28.36 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=60.9
Q ss_pred ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC----
Q 018700 29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ---- 104 (351)
Q Consensus 29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~---- 104 (351)
.++++|| +..+++.+++.....+ . ...+...|.++...+..+.|++. ++....++++++......
T Consensus 14 ~~lL~GT-----e~Gly~~~~~~~~~~~--~-kl~~~~~v~q~~v~~~~~lLi~L---sgk~~~L~~~~L~~L~~~~~~~ 82 (302)
T smart00036 14 KWLLVGT-----EEGLYVLNISDQPGTL--E-KLIGRRSVTQIWVLEENNVLLMI---SGKKPQLYSHPLSALVEKKEAL 82 (302)
T ss_pred cEEEEEe-----CCceEEEEcccCCCCe--E-EecCcCceEEEEEEhhhCEEEEE---eCCcceEEEEEHHHhhhhhhcc
Confidence 5788887 4567777766532111 1 22356799999999988888877 356666999999643210
Q ss_pred -CCC--CcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcC
Q 018700 105 -LNS--PQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD 151 (351)
Q Consensus 105 -~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 151 (351)
... +.......+ .|................+++.+...+|.++...
T Consensus 83 ~~~~~~~~~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~ 131 (302)
T smart00036 83 GSARLVIRKNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWY 131 (302)
T ss_pred CCccccccccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEcc
Confidence 000 000111122 3444344444443323223444566788887654
No 483
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=77.48 E-value=7.8 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.4
Q ss_pred eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018700 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (351)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (351)
.+.+.++|+++.++++....+.|++|..+.
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 789999999997777777889999998753
No 484
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.16 E-value=82 Score=31.42 Aligned_cols=132 Identities=9% Similarity=0.077 Sum_probs=77.9
Q ss_pred CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEEEEcCC
Q 018700 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDT 218 (351)
Q Consensus 143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~~~~~~ 218 (351)
|.++.|++-..+....++... .....+. +..|...++++| ....+++||+-..+.++...... |..+.+.-
T Consensus 912 g~~ytyk~~~~g~~lellh~T--~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~ 986 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKT--EIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG 986 (1205)
T ss_pred CceEEEEEEecCceeeeeecc--CCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecc
Confidence 446667665433322222222 1122333 455666655554 45689999998877666555333 77777754
Q ss_pred CCCcEEEEecCCCeEEEEecccCCcceeEeeCC--CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
. .+++|...-.+.++-.+...+.+..+... ...|+++.+-.. ..+|.+..=|.+.+-.+..
T Consensus 987 ~---RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~--~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 987 A---RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDY--DTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred e---EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecC--CceeeccccCcEEEEECCC
Confidence 3 56777776677777666555566666532 355777666544 4567777777766665543
No 485
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=77.15 E-value=36 Score=28.78 Aligned_cols=50 Identities=6% Similarity=0.045 Sum_probs=35.0
Q ss_pred EECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEec
Q 018700 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA 228 (351)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~ 228 (351)
.|+ +++..+.-+..|.+..+|.++|+.......+. ...++|. |+ ++++|.
T Consensus 209 RWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~-llvVgm 259 (335)
T TIGR03032 209 RWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GD-FAFVGL 259 (335)
T ss_pred cEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CC-EEEEEe
Confidence 454 56777777788999999988776555444444 8889998 76 555554
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.85 E-value=4.1 Score=20.73 Aligned_cols=25 Identities=4% Similarity=-0.032 Sum_probs=20.0
Q ss_pred CcEEEeecCCeEEEEEcccCCcCce
Q 018700 181 VNAVAATCESSVQFWDLRSMGKTNS 205 (351)
Q Consensus 181 ~~l~~~~~d~~i~iwd~~~~~~~~~ 205 (351)
..+++++.++.+..+|.++++....
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3577888899999999988876544
No 487
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.85 E-value=57 Score=28.93 Aligned_cols=150 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCC--CCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018700 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN--KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (351)
Q Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 197 (351)
.+....+..++++. +++.+..|.+..=.-.... ......... .+.++.|.+++..++++...+.+.--|-
T Consensus 238 ~Gsf~~v~~~~dG~--~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~------~l~~v~~~~dg~l~l~g~~G~l~~S~d~ 309 (398)
T PLN00033 238 TGTFSTVNRSPDGD--YVAVSSRGNFYLTWEPGQPYWQPHNRASAR------RIQNMGWRADGGLWLLTRGGGLYVSKGT 309 (398)
T ss_pred ccceeeEEEcCCCC--EEEEECCccEEEecCCCCcceEEecCCCcc------ceeeeeEcCCCCEEEEeCCceEEEecCC
Q ss_pred ccCCcCceeecce-------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE
Q 018700 198 RSMGKTNSIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS 270 (351)
Q Consensus 198 ~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 270 (351)
-.......+.... +..+.+.+++. ++++|..--.++--|--..-+....-..-....+.+.|.+++ ..+++
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~g~~~ 387 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK-KGFVL 387 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC-ceEEE
Q ss_pred eeCCCeEEEE
Q 018700 271 AGTDSTVNLW 280 (351)
Q Consensus 271 ~~~dg~i~iw 280 (351)
|. +|.|.-|
T Consensus 388 G~-~G~il~~ 396 (398)
T PLN00033 388 GN-DGVLLRY 396 (398)
T ss_pred eC-CcEEEEe
No 488
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=75.54 E-value=51 Score=28.26 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=54.8
Q ss_pred eeEEEecCCCCCcEEEEe-cC------CcEEEEEcCCCCCCccc-cccc---------ccCcccceeeeEECCCCCcEEE
Q 018700 123 INCVLWWSSGRHDKLVSI-DE------ENIFLWSLDCSNKNAQV-QSKQ---------SSGMLHYLSGGAWDPHDVNAVA 185 (351)
Q Consensus 123 v~~~~~~~~~~~~~~~~~-~d------~~v~iwd~~~~~~~~~~-~~~~---------~~~~~~~v~~~~~~~~~~~l~~ 185 (351)
.-+|++.+++. ++.+. .+ ..|..++.. +.....+ .... .......+.+++++|+++.|++
T Consensus 87 ~Egi~~~~~g~--~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 87 PEGIAVPPDGS--FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred hhHeEEecCCC--EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 34778866776 44443 34 567777765 3322222 1111 1123457889999999997776
Q ss_pred eec-----CC--e-------EEE--EEccc-CCcCce----eec------ce-eEEEEcCCCCCcEEE
Q 018700 186 ATC-----ES--S-------VQF--WDLRS-MGKTNS----IEH------AH-VRNVDYDTKKKHLLV 225 (351)
Q Consensus 186 ~~~-----d~--~-------i~i--wd~~~-~~~~~~----~~~------~~-v~~~~~~~~~~~~l~ 225 (351)
+.. |+ . +++ ||..+ ++.... +.. .. +..+.+-++++ +++
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLv 230 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLV 230 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEE
Confidence 642 22 1 444 45444 222221 121 22 88899999998 554
No 489
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.43 E-value=8.2 Score=19.02 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=12.3
Q ss_pred EEEEcCCCCCcEEEEecCCCeEEE
Q 018700 212 RNVDYDTKKKHLLVTAADESGIHL 235 (351)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i 235 (351)
..++++++|. ++++-..+..|++
T Consensus 5 ~gvav~~~g~-i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGN-IYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSE-EEEEECCCTEEEE
T ss_pred cEEEEeCCCC-EEEEECCCCEEEE
Confidence 4555556665 5555555555544
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.10 E-value=29 Score=25.15 Aligned_cols=119 Identities=12% Similarity=-0.002 Sum_probs=63.2
Q ss_pred eeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecC---C-CCCcEEEEecCCcEE
Q 018700 71 LSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS---S-GRHDKLVSIDEENIF 146 (351)
Q Consensus 71 i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~-~~~~~~~~~~d~~v~ 146 (351)
-.|....+.|+++ ..-++|.|++.......... ....+..+ .-...|++++--+ + +...++.+ ....+.
T Consensus 4 GkfDG~~pcL~~a----T~~gKV~IH~ph~~~~~~~~-~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG-t~t~ll 76 (136)
T PF14781_consen 4 GKFDGVHPCLACA----TTGGKVFIHNPHERGQRTGR-QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG-TQTSLL 76 (136)
T ss_pred EEeCCCceeEEEE----ecCCEEEEECCCcccccccc-ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe-ccceEE
Confidence 3566666677776 36678999987632221110 12233333 3345667765433 2 34445554 457899
Q ss_pred EEEcCCCCCCcccccccccCcccceeeeEEC---CCCCcEEEeecCCeEEEEEcccCCc
Q 018700 147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD---PHDVNAVAATCESSVQFWDLRSMGK 202 (351)
Q Consensus 147 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~ 202 (351)
.||+..... ++.... ...+.++.+- ....-++..+.+..|.-||.+..+.
T Consensus 77 aYDV~~N~d---~Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 77 AYDVENNSD---LFYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EEEcccCch---hhhhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 999986432 222222 2256666552 2223455555566777666654443
No 491
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=74.35 E-value=64 Score=28.80 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=79.6
Q ss_pred cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEec---CCCCCcEEEEecCCcEEEEEcCCCCCC------c
Q 018700 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW---SSGRHDKLVSIDEENIFLWSLDCSNKN------A 157 (351)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~~~~~d~~v~iwd~~~~~~~------~ 157 (351)
|+..|.++||+...... .+. ..+.+ ..-..+|..+..- +....+.++--.-..+.||.+...... .
T Consensus 43 GS~~G~LrIy~P~~~~~---~~~-~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 43 GSYSGILRIYDPSGNEF---QPE-DLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred eccccEEEEEccCCCCC---CCc-cEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEE
Confidence 58899999999752110 001 12212 2345688877653 333333455555678888888422111 1
Q ss_pred c---cccccccCcccceeeeEECC----C-CCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEe
Q 018700 158 Q---VQSKQSSGMLHYLSGGAWDP----H-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTA 227 (351)
Q Consensus 158 ~---~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~ 227 (351)
. ...... ......+++-| . ...+.+=+-||.+.+++-+.-.....+. .. .-.+.|.+..+ .|+++
T Consensus 118 ~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgPl~Y~~~tD-sfvt~ 192 (418)
T PF14727_consen 118 QLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGPLCYCPRTD-SFVTA 192 (418)
T ss_pred EEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcCeEEeecCC-EEEEe
Confidence 1 111111 11333333322 2 2446666889999999966533222222 22 66788888887 78888
Q ss_pred cCCCeEEEEecc
Q 018700 228 ADESGIHLWDLR 239 (351)
Q Consensus 228 ~~dg~i~i~d~~ 239 (351)
+.+..+.-|...
T Consensus 193 sss~~l~~Yky~ 204 (418)
T PF14727_consen 193 SSSWTLECYKYQ 204 (418)
T ss_pred cCceeEEEecHH
Confidence 888888888764
No 492
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.87 E-value=93 Score=30.43 Aligned_cols=149 Identities=9% Similarity=0.039 Sum_probs=78.3
Q ss_pred EEEEecCCcEEEEEcCCCCCCccccccc-------ccCcccceeeeEECC--CCCcEEEeec----------CCeEEEEE
Q 018700 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQ-------SSGMLHYLSGGAWDP--HDVNAVAATC----------ESSVQFWD 196 (351)
Q Consensus 136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~--~~~~l~~~~~----------d~~i~iwd 196 (351)
++.++.|+.+.-.|.++++.+..+-... .......-..+.-.| .+..+++++. +|.|+-+|
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 5666678999988988876654332110 000000000011111 1345566542 58899999
Q ss_pred cccCCcCceeecce--------------------eEEEEcCCCCCcEEEEecC------------------CCeEEEEec
Q 018700 197 LRSMGKTNSIEHAH--------------------VRNVDYDTKKKHLLVTAAD------------------ESGIHLWDL 238 (351)
Q Consensus 197 ~~~~~~~~~~~~~~--------------------v~~~~~~~~~~~~l~~~~~------------------dg~i~i~d~ 238 (351)
+++|+.+..+.... -..++++++.. +++.+.. .+.|.-.|.
T Consensus 343 a~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 343 VNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred CCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99998877665321 13345555554 3433321 234555566
Q ss_pred ccCCcceeEeeCCCCcee---------EEEecC-CC--CCeEEEeeCCCeEEEEEcCCCC
Q 018700 239 RMLKAPIQELPGHTHWTW---------AVCCNP-EY--DGFILSAGTDSTVNLWLVSTSN 286 (351)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~---------~~~~~~-~~--~~~l~s~~~dg~i~iwd~~~~~ 286 (351)
++ ++..-.++.....+. -+.+.. +| ...++.++.+|.+.++|.+++.
T Consensus 422 ~T-Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 422 TT-GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CC-CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 55 444444442111111 111222 44 1378999999999999999853
No 493
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=73.14 E-value=38 Score=33.17 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=48.4
Q ss_pred CCeEEEEEcccCCcCce-eecce-eEEEEcCCCCCcEEE-EecCC----CeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018700 189 ESSVQFWDLRSMGKTNS-IEHAH-VRNVDYDTKKKHLLV-TAADE----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (351)
Q Consensus 189 d~~i~iwd~~~~~~~~~-~~~~~-v~~~~~~~~~~~~l~-~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 261 (351)
.+.|.+-|......... +.... +.+-+|+|||+.+.+ ++-+. ..|++-|+++.+.-+..+......|-.-...
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 35888888876555443 44333 889999999996666 33333 2588889987665555555445555555555
Q ss_pred CCC
Q 018700 262 PEY 264 (351)
Q Consensus 262 ~~~ 264 (351)
++|
T Consensus 408 e~g 410 (912)
T TIGR02171 408 ENG 410 (912)
T ss_pred CCC
Confidence 555
No 494
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=72.15 E-value=1.1e+02 Score=30.42 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=62.3
Q ss_pred CCCCCcEEEeecCCeEEEEEcccCCcCceee--cce-eEEEEcCCC--CCc---EEEEecCCCeEEEEecccCCcce-eE
Q 018700 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH-VRNVDYDTK--KKH---LLVTAADESGIHLWDLRMLKAPI-QE 247 (351)
Q Consensus 177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~-v~~~~~~~~--~~~---~l~~~~~dg~i~i~d~~~~~~~~-~~ 247 (351)
+.+...++.++.++.+...++..+....... ..+ +.|+.++|- +++ +++.|..+..+.+.-.-.....+ +.
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~ 575 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE 575 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence 3344567777777778777777655211111 112 999999976 444 78888876655544332111111 11
Q ss_pred -eeC--CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018700 248 -LPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (351)
Q Consensus 248 -~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 284 (351)
+.+ -...|.-..+-.+. .+|.++..||.+.-|-+..
T Consensus 576 ~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 576 QLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred ccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEc
Confidence 111 12334445565666 8999999999988776554
No 495
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.76 E-value=7.4 Score=20.83 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=21.8
Q ss_pred cEEEeecCCeEEEEEcccCCcCceeec
Q 018700 182 NAVAATCESSVQFWDLRSMGKTNSIEH 208 (351)
Q Consensus 182 ~l~~~~~d~~i~iwd~~~~~~~~~~~~ 208 (351)
.+++++.+|.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356668899999999999988877764
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=71.72 E-value=35 Score=32.84 Aligned_cols=79 Identities=5% Similarity=0.045 Sum_probs=51.3
Q ss_pred eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018700 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (351)
Q Consensus 115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (351)
.+.....+|...++..| ++.++.+|.|.++...+........... .|...|+++...-.+-+++.++.| .+++
T Consensus 621 ~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leahq--ee~~~Vthm~~~~~gVwvafasG~-~~rl 693 (925)
T KOG3522|consen 621 SIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAHQ--EEAHSVTHMLYLDNGVWVAFASGD-EERL 693 (925)
T ss_pred ccccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHHH--hhcceEEEEEeeCCceEEEEcCCC-EEEE
Confidence 33445567888888776 6777789999999998766555554433 334489999888655555444433 4555
Q ss_pred EEcccC
Q 018700 195 WDLRSM 200 (351)
Q Consensus 195 wd~~~~ 200 (351)
++.++-
T Consensus 694 fhtetl 699 (925)
T KOG3522|consen 694 FHTETL 699 (925)
T ss_pred eccccc
Confidence 555443
No 497
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.08 E-value=1.1e+02 Score=29.85 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=43.0
Q ss_pred CCcEEEeecCCeEEEEEcccCCcCceeecce-eE-------------EEEcCC--CCCcEEEEecC----------CCeE
Q 018700 180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VR-------------NVDYDT--KKKHLLVTAAD----------ESGI 233 (351)
Q Consensus 180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~-------------~~~~~~--~~~~~l~~~~~----------dg~i 233 (351)
+..++.++.|+.+.-.|.++++....+.... +. .+.-.| .+. .+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEE
Confidence 4578888899999999999998886654221 10 011111 122 4555542 6889
Q ss_pred EEEecccCCcceeEee
Q 018700 234 HLWDLRMLKAPIQELP 249 (351)
Q Consensus 234 ~i~d~~~~~~~~~~~~ 249 (351)
+-+|.++ ++.+-.+.
T Consensus 339 ~A~Da~T-Gkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNT-GALVWAWD 353 (764)
T ss_pred EEEECCC-CcEeeEEe
Confidence 9999998 65555544
No 498
>PHA02790 Kelch-like protein; Provisional
Probab=69.45 E-value=92 Score=28.51 Aligned_cols=95 Identities=9% Similarity=0.037 Sum_probs=46.1
Q ss_pred CCCcEEEeecC---CeEEEEEcccCCcC--ceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee--
Q 018700 179 HDVNAVAATCE---SSVQFWDLRSMGKT--NSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-- 249 (351)
Q Consensus 179 ~~~~l~~~~~d---~~i~iwd~~~~~~~--~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 249 (351)
+++..+.|+.+ ..+..||.++.+-. ..+..+. ...++ -++. +++.|+ .+.+||.++ .+ -..+.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~-IYv~GG---~~e~ydp~~-~~-W~~~~~m 433 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRR-LFLVGR---NAEFYCESS-NT-WTLIDDP 433 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCE-EEEECC---ceEEecCCC-Cc-EeEcCCC
Confidence 45656666643 35677887764321 1111111 22222 2454 666664 467888764 21 22221
Q ss_pred -CCCCceeEEEecCCCCCeEEEeeCC-----CeEEEEEcCC
Q 018700 250 -GHTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST 284 (351)
Q Consensus 250 -~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 284 (351)
...... +++ .-++ .+.+.||.+ ..+..||...
T Consensus 434 ~~~r~~~-~~~-v~~~-~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 434 IYPRDNP-ELI-IVDN-KLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcccc-EEE-EECC-EEEEECCcCCCcccceEEEEECCC
Confidence 111112 222 2244 677777754 3566777765
No 499
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=69.02 E-value=1.3e+02 Score=30.15 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=72.1
Q ss_pred CCeEEEEEccc-CCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCC
Q 018700 189 ESSVQFWDLRS-MGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPE 263 (351)
Q Consensus 189 d~~i~iwd~~~-~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~ 263 (351)
+|.++.|++-. ++.+.-+.... -.-.+..|... .+++ +-...+++||+.+ +++++... .....|+.+++.-
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~-~~La-gvG~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~~- 986 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQG-RVLA-GVGRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTYG- 986 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCC-EEEE-ecccEEEEeeCCh-HHHHhhhhhccCceEEEEEeecc-
Confidence 35577777543 33221111111 33355667766 3443 3445999999986 55554433 2345677777654
Q ss_pred CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018700 264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVV 341 (351)
Q Consensus 264 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~v 341 (351)
..++.|...-.+.++..+.. ...+..+.. -...|+.+.+-..+. +|.+..=|.+.+
T Consensus 987 --~RI~VgD~qeSV~~~~y~~~------------------~n~l~~fadD~~pR~Vt~~~~lD~~t--vagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 987 --ARIVVGDIQESVHFVRYRRE------------------DNQLIVFADDPVPRHVTALELLDYDT--VAGADRFGNIAV 1044 (1205)
T ss_pred --eEEEEeeccceEEEEEEecC------------------CCeEEEEeCCCccceeeEEEEecCCc--eeeccccCcEEE
Confidence 44555655445555544431 233434422 234466666655443 666666677777
Q ss_pred eecCccc
Q 018700 342 ESVKPFL 348 (351)
Q Consensus 342 w~~~~~~ 348 (351)
-.+++..
T Consensus 1045 vR~P~d~ 1051 (1205)
T KOG1898|consen 1045 VRIPPDV 1051 (1205)
T ss_pred EECCCcc
Confidence 7766543
No 500
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=68.86 E-value=84 Score=27.82 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=36.5
Q ss_pred cEEEeecCCeEEEEEcccCCcCceeecce------eEEEEcCCCCCcEEEEe------cCCCeEEEEecccCC
Q 018700 182 NAVAATCESSVQFWDLRSMGKTNSIEHAH------VRNVDYDTKKKHLLVTA------ADESGIHLWDLRMLK 242 (351)
Q Consensus 182 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~------~~dg~i~i~d~~~~~ 242 (351)
.+..-+..+.|-+|+..+++....+.... ..-+.|.+...+++.++ ..++.|++||.|...
T Consensus 237 ~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n 309 (465)
T KOG2714|consen 237 QLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN 309 (465)
T ss_pred hhhhccccccccccchhhhceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC
Confidence 34444567889999988874333333221 44566666555344333 246789999998743
Done!