BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018701
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 98 SKDGIPRYV----------IAFRGTLTKPDSFSR-DLELDVHLIRNGLHLTSRFEIAIQA 146
SK GI YV ++FRG++ + + D + D + +G + S F+ A
Sbjct: 58 SKTGIGGYVATDPTRKEIVVSFRGSINIRNWLTNLDFDQDDCSLTSGCGVHSGFQNAWNE 117
Query: 147 VRNMVASVG--------SSNVWLAGHSLGSAMAMLAGKTVAKTGVFLEAYLFNPPFV 195
+ + S V GHSLG A+A LAG + G L+ Y + P V
Sbjct: 118 ISAAATAAVAKARKANPSFKVVSVGHSLGGAVATLAGANLRIGGTPLDIYTYGSPRV 174
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 165 SLGSAMAMLAGKTVAKTGVFLEAYLFNPPFVSAPIERIKDKRVKHG 210
+LG M +AGK A +G ++A PF PIE+++++ +K+G
Sbjct: 923 TLGQIMEGIAGKYAALSGNIVDA----TPFYKTPIEQLQNEILKYG 964
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 159 VWLAGHSLGSAMAMLAGKTVA--KTGVFLEAYLF------NPPFVSAPIERIKDK 205
V + GHSLG+AM +L + G + YLF NP F S ++I DK
Sbjct: 140 VTVIGHSLGAAMGLLCAMDIELRMDGGLYKTYLFGLPRLGNPTFASFVDQKIGDK 194
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 159 VWLAGHSLGSAMAMLAGKTVA--KTGVFLEAYLF------NPPFVSAPIERIKDK 205
V + GHSLG+AM +L + G + YLF NP F S ++I DK
Sbjct: 139 VTVIGHSLGAAMGLLCAMDIELRMDGGLYKTYLFGLPRLGNPTFASFVDQKIGDK 193
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 165 SLGSAMAMLAGKTVAKTGVFLEAYLFNPPFVSAPIERIKDKRVKHG 210
+LG M +AGK A +G ++A PF PIE+++++ +++G
Sbjct: 920 TLGQIMEGIAGKYAALSGNIVDA----TPFYKTPIEQLQNEILRYG 961
>pdb|1J7X|A Chain A, Crystal Structure Of A Functional Unit Of
Interphotoreceptor Retinoid-Binding Protein (Irbp)
Length = 302
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 200 ERIKDKRVKHGIRIAGSVITAGLALAAKINHHNTRLSEDPFLALSAWVPCLFVNPADDIC 259
ERI ++H + S + + +AAK+N+ L+EDP L L + L V P D I
Sbjct: 23 ERIP-TLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVLKSKTDTL-VXPGDSIQ 80
Query: 260 SEYI 263
+E I
Sbjct: 81 AENI 84
>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of
Human Methionine Synthase Reductase
Length = 539
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 220 AGLALAAKIN-----HHNTRLSEDPFLALSAWVPCLFVNPADDICSEYIGYFEHRKKMEE 274
+G ALA KI+ ++ L +DP +P + V P I + +IG+ +HR+K++E
Sbjct: 353 SGKALAPKISIFPRTTNSFHLPDDP------SIPIIMVGPGTGI-APFIGFLQHREKLQE 405
>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing
Fnr-Like Module Of Human Methionine Synthase Reductase
Length = 539
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 220 AGLALAAKIN-----HHNTRLSEDPFLALSAWVPCLFVNPADDICSEYIGYFEHRKKMEE 274
+G ALA KI+ ++ L +DP +P + V P I + +IG+ +HR+K++E
Sbjct: 353 SGKALAPKISIFPRTTNSFHLPDDP------SIPIIMVGPGTGI-APFIGFLQHREKLQE 405
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 145 QAVRNMVASVGSSNVWLAGHSLGSAMAMLAGKTVAKTGVFLEAYLFNPPFVS 196
Q V + V V GHSLG A+A +AG + G ++ + + P V
Sbjct: 126 QKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVG 177
>pdb|4EO9|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpm1 From
Mycobacterium Leprae
Length = 268
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 84 YEFKPPPSHSHSDLSKDGIPRYVIAFRGTLTK 115
Y+ PPP S+ S+D PRY G LT+
Sbjct: 143 YDTPPPPIEKGSEFSQDADPRYTDIGGGPLTE 174
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 145 QAVRNMVASVGSSNVWLAGHSLGSAMAMLAGKTVAKTGVFLEAYLFNPPFVS 196
Q V + V V GH+LG A+A +AG + G ++ + + P V
Sbjct: 126 QKVEDAVREHPDYRVVFTGHALGGALATVAGADLRGNGYDIDVFSYGAPRVG 177
>pdb|2KHI|A Chain A, Nmr Structure Of The Domain 4 Of The E. Coli Ribosomal
Protein S1
Length = 115
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 10 LSGPLHLSAIDWT--NVHHRRSVAACLVQGVYILERDRQLQRHE---SQALAPPWWEF 62
+ G +H+S +DWT N+H + V V V +L+ D + +R Q A PW +F
Sbjct: 54 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQF 111
>pdb|1RII|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|C Chain C, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|D Chain D, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
Length = 265
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 84 YEFKPPPSHSHSDLSKDGIPRYVIAFRGTLTK 115
Y+ PPP S S+D PRY G LT+
Sbjct: 120 YDTPPPPIERGSQFSQDADPRYADIGGGPLTE 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,665,365
Number of Sequences: 62578
Number of extensions: 429934
Number of successful extensions: 966
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 15
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)