BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018703
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKP 56
K V+CK + G C KG+ CEF H++ + C +Y K G CS C + H+ P
Sbjct: 15 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECS-NKECPFLHIDP 68
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKP 56
K V+CK + G C KG+ CEF H++ C +Y K G CS C + H+ P
Sbjct: 9 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDP 62
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 19/84 (22%)
Query: 128 PADRSICSFAAAGNCPRGEKCPHIHGD-------TCPTC--GKQCL---HPFRPEERE-- 173
P R +C F G C R E CP++HGD T C G C+ P E RE
Sbjct: 10 PKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPLTEETRELL 69
Query: 174 -----EHMKSCEKKQKHLEALRRS 192
+ ++ + +K +E L++S
Sbjct: 70 DKMLADDAEAGAEDEKEVEELKKS 93
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEH 53
KR LCKF+ G C + E+C + H D P + Y+ G C G C + H
Sbjct: 12 KRELCKFYITGFCARAENCPYMH--GDFPCKL--YHTTGNCINGDDCMFSH 58
>pdb|2C35|A Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|C Chain C, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|E Chain E, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|G Chain G, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 152
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 134 CSFAAAGNCPRG----EKCPHI----HGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKH 185
AA G+ PR E + +T T +H E R++ +S E +Q+
Sbjct: 9 SQMAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHML-LEHRKQQNESAEDEQEL 67
Query: 186 LEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVN 245
E ++ + + R ++ T A + LL + H F ++C+ N
Sbjct: 68 SEVFMKT--LNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANL------------ 113
Query: 246 TALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSK 284
CP + S +IPS+ + EE Q+I+D ++K
Sbjct: 114 -----CPETAEESKALIPSLEGRFEDEELQQILDDIQTK 147
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 18/71 (25%)
Query: 186 LEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIR-NWRSSSPTSGMDV 244
LE ++ +E+ C +CL+ +L +P +A+ C+H FC +CI N+ S+ T G
Sbjct: 13 LEMIK--EEVTCPICLE-LLKEPVSAD--------CNHSFCRACITLNYESNRNTDGKG- 60
Query: 245 NTALRACPICR 255
CP+CR
Sbjct: 61 -----NCPVCR 66
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii
Au- Rich Element By The Tandem Zinc Finger Domain Of
Tis11d
Length = 70
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 3 KRVLCK-FFAHGACLKGEHCEFSHDWKD---------PPNNIC-TYYQKGFCSYGSRCRY 51
K LC+ F G C GE C+F+H + + +C T++ GFC YG RC +
Sbjct: 5 KTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHF 64
Query: 52 EH 53
H
Sbjct: 65 IH 66
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGM 242
Q H++ + E+ C + L K A K + C H C SC+ +W+ S
Sbjct: 4 QDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG---- 59
Query: 243 DVNTALRACPICRKLSYFVIPSVIWYYTP 271
+ CP CR P V+ + P
Sbjct: 60 ------QGCPFCRCEIKGTEPIVVDPFDP 82
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 188 ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTA 247
LR S + C +C+D + + +EC H FC C+R+ ++ T
Sbjct: 4 GLRPSGTVSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-------- 53
Query: 248 LRACPICRK 256
CP CRK
Sbjct: 54 ---CPTCRK 59
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGM 242
Q H++ + E+ C + L K A K + C H C SC+ +W+ S
Sbjct: 314 QDHIKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG---- 369
Query: 243 DVNTALRACPICR 255
+ CP CR
Sbjct: 370 ------QGCPFCR 376
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGM 242
Q H++ + E+ C + L K A K + C H C SC+ +W+ S
Sbjct: 7 QDHIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG---- 62
Query: 243 DVNTALRACPICR 255
+ CP CR
Sbjct: 63 ------QGCPFCR 69
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGM 242
Q H++ + E+ C + L K A K + C H C SC+ +W+ S
Sbjct: 312 QDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG---- 367
Query: 243 DVNTALRACPICR 255
+ CP CR
Sbjct: 368 ------QGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGM 242
Q H++ + E+ C + L K A K + C H C SC+ +W+ S
Sbjct: 312 QDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG---- 367
Query: 243 DVNTALRACPICR 255
+ CP CR
Sbjct: 368 ------QGCPFCR 374
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGM 242
Q H++ + E+ C + L K A K + C H C SC+ +W+ S
Sbjct: 314 QDHIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG---- 369
Query: 243 DVNTALRACPICR 255
+ CP CR
Sbjct: 370 ------QGCPFCR 376
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTAL 248
LR S + C +C+D + + +EC H FC C+R+ ++ T
Sbjct: 10 LRPSGTVSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--------- 58
Query: 249 RACPICRK 256
CP CRK
Sbjct: 59 --CPTCRK 64
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 185 HLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDV 244
H++ + E+ C + L K A K + C H C SC+ W+ S
Sbjct: 8 HIKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDG------ 61
Query: 245 NTALRACPICR 255
+ CP CR
Sbjct: 62 ----QGCPFCR 68
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 17/66 (25%)
Query: 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALR 249
+ +E+ C +CLD +L KP + C H FC+ CI +S
Sbjct: 16 KLQEEVICPICLD-ILQKPVTID--------CGHNFCLKCITQIGETS--------CGFF 58
Query: 250 ACPICR 255
CP+C+
Sbjct: 59 KCPLCK 64
>pdb|2EJC|A Chain A, Crystal Structure Of Pantoate--Beta-Alanine Ligase (Panc)
From Thermotoga Maritima
Length = 280
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 242 MDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFN 294
++++ + CPI R+ + S Y +PEE+Q+ + Y+S LK + + N
Sbjct: 164 LNMDVEMIECPIVREPDGLAMSSRNVYLSPEERQQALSLYQS-LKIAENLYLN 215
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 30/105 (28%)
Query: 152 HGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAA 211
+ +TCPTC K+ H +++ S + C +C+D
Sbjct: 47 NANTCPTCRKKINH-----------------KRYHPIYIGSGTVSCPICMDGY--SEIVQ 87
Query: 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256
+ + +EC H FC C+R+ ++ T CP CRK
Sbjct: 88 NGRLIVSTECGHVFCSQCLRDSLKNANT-----------CPTCRK 121
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237
+ +E+ C +CLD +L KP + C H FC+ CI +S
Sbjct: 16 KLQEEVICPICLD-ILQKPVTID--------CGHNFCLKCITQIGETS 54
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 185 HLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDV 244
H++ + E+ C + L K A K + C H C SC+ W+ S
Sbjct: 320 HIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDG------ 373
Query: 245 NTALRACPICR 255
+ CP CR
Sbjct: 374 ----QGCPFCR 380
>pdb|2FC6|A Chain A, Solution Structure Of The Zf-Ccch Domain Of Target Of
Egr1, Member 1 (Nuclear)
Length = 50
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 123 PRNLKPADRSIC-SFAAAGNCPRGEKCPHIHGDTCPTCG 160
P +P SIC +F+A G CP G +CP H + P+ G
Sbjct: 12 PATHRPHPTSICDNFSAYGWCPLGPQCPQSHDISGPSSG 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,965,966
Number of Sequences: 62578
Number of extensions: 441073
Number of successful extensions: 1224
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 70
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)