BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018703
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis
thaliana GN=At3g63550 PE=3 SV=1
Length = 350
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/347 (70%), Positives = 283/347 (81%), Gaps = 7/347 (2%)
Query: 1 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
MSKR+LCKFFAHGACLKGEHCEFSHDWKDP NNICTYYQKG CSYGSRCRYEHVK SR
Sbjct: 1 MSKRILCKFFAHGACLKGEHCEFSHDWKDPTNNICTYYQKGICSYGSRCRYEHVKASRPH 60
Query: 61 SAASSSSSVSHPSRATSSGITK---VPGVMP-ELSALSRPFLPPNKTAWNPESVCNDSLE 116
+ASSSS+V PS A++S +PGV +LS + L P WN +S+ DS++
Sbjct: 61 PSASSSSAVPRPSPASASNTLACAFLPGVAERDLSPVPSSSLKPT---WNLDSLHQDSVD 117
Query: 117 NDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHM 176
+ P +KP + ICSFAAAG+CPRG +CPHIHG CPTCGK CLHPFRP+EREEH
Sbjct: 118 EVKTSNPGTVKPEELPICSFAAAGDCPRGNECPHIHGTICPTCGKCCLHPFRPDEREEHK 177
Query: 177 KSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSS 236
K CEKK K LEAL+ SQEIEC VCL+RVLSK T AERKFGLL+ECDH FCI+CIRNWRSS
Sbjct: 178 KVCEKKHKQLEALKLSQEIECCVCLERVLSKATPAERKFGLLTECDHAFCIACIRNWRSS 237
Query: 237 SPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFG 296
SP++GMDVN+ LRACPICRKLSYFV+PSVIW+ PEEK+EI+D+Y+ KL+SIDCKHF+FG
Sbjct: 238 SPSTGMDVNSTLRACPICRKLSYFVVPSVIWFSAPEEKKEIMDNYREKLRSIDCKHFSFG 297
Query: 297 NGNCPFGTSCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRFTNL 343
+GNCPFGTSCFYKHAY DGRLEEVVLRHL ++DG TVIAKDIR ++
Sbjct: 298 DGNCPFGTSCFYKHAYHDGRLEEVVLRHLDAEDGQTVIAKDIRLSDF 344
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica
GN=MKRN PE=2 SV=1
Length = 368
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/364 (64%), Positives = 274/364 (75%), Gaps = 19/364 (5%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSES 61
+KRVLCKFF HGACLKGE+CEFSHDW D PNN+CT+YQKG CSYGSRCRY+HVK SR+ +
Sbjct: 3 TKRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGSRCRYDHVKVSRNPT 62
Query: 62 AASSSS--------------SVSHPSRATSSGITKVPGVMPELSALSRPFLPPN-KTAWN 106
A S S P + P + L+ P + +
Sbjct: 63 VAPPPSSSTTTRASSSLQPLSFGRPHHVGYQADSSNPRQQISMDVLAHSGSKPVWRNDFQ 122
Query: 107 PESVCNDSLE---NDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQC 163
ESV D ++ + V L PAD ICSFAA GNCP GE+CP +HGD C TCGK C
Sbjct: 123 HESVLEDGIDWSISPTVQNQTTLSPADLPICSFAAGGNCPYGEECPQMHGDLCTTCGKMC 182
Query: 164 LHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 223
LHP+RP+EREEH K CEK K LE+L+RSQEIECSVCLDRVLSKPTAAERKFGLLSECDH
Sbjct: 183 LHPYRPDEREEHTKLCEKNHKRLESLKRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 242
Query: 224 PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKS 283
PFCISCIRNWR++SPTSGMDVN+ALRACPICRKLSY+VIPSV+WY++ EEK EIID+YK+
Sbjct: 243 PFCISCIRNWRNNSPTSGMDVNSALRACPICRKLSYYVIPSVLWYFSKEEKLEIIDNYKA 302
Query: 284 KLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRFTN- 342
KLKSIDCK+F+FG G CPFG+SCFYKHAY DGRLEEV+LRHL +DDGSTVIAK+IR ++
Sbjct: 303 KLKSIDCKYFDFGTGTCPFGSSCFYKHAYRDGRLEEVILRHLDADDGSTVIAKNIRLSDF 362
Query: 343 LSQL 346
LS+L
Sbjct: 363 LSRL 366
>sp|Q6IDS6|C3H35_ARATH E3 ubiquitin-protein ligase makorin OS=Arabidopsis thaliana GN=MKRN
PE=2 SV=1
Length = 323
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/343 (63%), Positives = 256/343 (74%), Gaps = 27/343 (7%)
Query: 1 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
MS R+LCKFF HG+CLKGE+CEFSHD KDPPNN+CT+YQK C YGSRCRY+HV+ + +
Sbjct: 1 MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNL 60
Query: 61 SAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEV 120
+S S S+ T S + G D+ + D+
Sbjct: 61 PLSSDSESLDRSISTTPSRHLQQQG---------------------------DNNDGDKS 93
Query: 121 DEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE 180
+ P + ICSFAAAG+CPRG +CPH+HGD C TCGK+CLHPFRPEEREEH K CE
Sbjct: 94 SNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEEREEHTKECE 153
Query: 181 KKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTS 240
KKQKH+EAL++SQ+IECSVCLDR+LSK T ERKFGLL+ECDHPFCI CIRNWRSS+P S
Sbjct: 154 KKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRNWRSSAPVS 213
Query: 241 GMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNC 300
GMDVN+ LRACPICRKLSYFV+PSV+WY +PEEK+EIID YK+KL+SIDCKHFNFGNGNC
Sbjct: 214 GMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLRSIDCKHFNFGNGNC 273
Query: 301 PFGTSCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRFTNL 343
PFG SCFYKHAY+DG LEEVVLRHLGS +G TVI IR +
Sbjct: 274 PFGASCFYKHAYSDGHLEEVVLRHLGSQEGETVITDSIRLSEF 316
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 199/356 (55%), Gaps = 34/356 (9%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNI-CTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F HG C +G++C +SHD D P ++ C Y+Q+G+C YG RCRYEH KP + E
Sbjct: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
Query: 61 SAASSS-------------SSVSHPSRATSSGITK-------VPGVMPELSALSRPFLPP 100
A ++ SS+ P ++G + G E + F+P
Sbjct: 116 EATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPG 175
Query: 101 NKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155
C + S+ +E ++ + + +C +AA G C GE C ++HGD+
Sbjct: 176 QPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDS 235
Query: 156 CPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAA 211
C CG Q LHP +R +H+KSC E +K +E A++RS+++ C +C++ V K +
Sbjct: 236 CDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPS 295
Query: 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271
ER+FG+LS C+H +C+ CIR WRS+ + +++CP CR S FVIPS W
Sbjct: 296 ERRFGILSNCNHTYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEK 351
Query: 272 EEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGS 327
EEKQ++I YK + + C++F+ G G+CPFG +CFYKHAY DGR EE + +G+
Sbjct: 352 EEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGT 407
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 193/336 (57%), Gaps = 24/336 (7%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGFCSYGSRCRYEHVKPSRS 59
+K V C++F HG C +G++C +SHD + P IC ++QKG C +G RCR+EH KP+++
Sbjct: 19 TKHVTCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGDRCRFEHCKPAKN 78
Query: 60 ESAASS------SSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCND 113
E + S+S++ PS SG T VPG ++A F+P E +
Sbjct: 79 EELPAPQMLPLPSASLAGPSDPEPSGPTPVPGAQDWVNAAE--FVPGQPYCGRAEQAKVE 136
Query: 114 SL-----ENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFR 168
S E D P N K + +C +AA G C G C ++HGD C CG Q LHP
Sbjct: 137 SSVPLIEEFDSYPAPDN-KQLRKQLCPYAAVGECRYGINCAYLHGDVCYMCGLQVLHPTD 195
Query: 169 PEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP 224
+R EH K+C E +K +E A++RS+++ C VC++ V K +ER+FG+LS C H
Sbjct: 196 NNQRSEHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCSHC 255
Query: 225 FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSK 284
+C+ CIR WRS+ + +++CP CR S FVIPS W ++KQ++I YK
Sbjct: 256 YCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEDKDDKQKLIQKYKDG 311
Query: 285 LKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEV 320
+ S C++F+ G G CPFG++CFYKHA+ DGRLEE
Sbjct: 312 MGSKPCRYFDEGRGTCPFGSNCFYKHAFPDGRLEEA 347
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/361 (37%), Positives = 198/361 (54%), Gaps = 50/361 (13%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K++ C++F HG C +G C FSHD + P+ IC YYQKG+C+YG+RCRY+H +PS +
Sbjct: 3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62
Query: 61 SAASSSSSVS---------HPSRATSSGITKVPGVMP-------------ELSALSRPFL 98
A + + S HP ++ I K P LS ++
Sbjct: 63 GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122
Query: 99 PPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNC 142
P+ + NP S C+D + E+ +P + A RS +C +AAAG C
Sbjct: 123 QPSMVS-NPGS-CSDPQPSPEM-KPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGEC 179
Query: 143 PRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIECS 198
G+ C ++HG+ C C Q LHPF PE+R+ H K C E + + A + SQ+ CS
Sbjct: 180 RFGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCS 239
Query: 199 VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258
+C++ +L K +A+ER+FG+LS C+H +C+SCIR WR + N +++CP CR +S
Sbjct: 240 ICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFE----NPIIKSCPECRVIS 295
Query: 259 YFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLE 318
FVIPSV W +K E+I+++K + CK+F G G CPFG+ C Y+HAY DGRL
Sbjct: 296 EFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 355
Query: 319 E 319
E
Sbjct: 356 E 356
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 241 bits (615), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 197/358 (55%), Gaps = 34/358 (9%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F HG C KG +C +SHD + +C YYQ+G C+YG RCRYEH KP + E
Sbjct: 52 TKQVTCRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEHTKPLKRE 111
Query: 61 S-------------AASSSSSVSHPSRATSSGITK-------VPGVMPELSALSRPFLPP 100
A+SS ++ P S+G + G E + F+P
Sbjct: 112 EVTAANLAAKSDLPASSSLPALVEPLAEVSTGEAESVNSNFAAAGAGGEDWVNAIEFVPG 171
Query: 101 NKTAWNPESVCNDS-----LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155
C ++ + +E+++ + + +C +AA G C GE C ++HGD
Sbjct: 172 QPYCGRAAPSCTEAPLQGMVIEEELEKQQTNVEMKKQLCPYAAVGECRYGENCVYLHGDA 231
Query: 156 CPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAA 211
C CG Q LHP +R +H+KSC E +K +E A++RS+++ C +C++ V K +
Sbjct: 232 CDMCGLQVLHPVDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPS 291
Query: 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271
ER+FG+LS C+H +C+ CIR WRS+ + +++CP CR S FVIPS W
Sbjct: 292 ERRFGILSNCNHTYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEK 347
Query: 272 EEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGSDD 329
EEKQ++I YK + + C++F+ G G+CPFG +CFYKHAY DGR EE + +G+ +
Sbjct: 348 EEKQKLIQKYKEAMSNKPCRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSN 405
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNI-CTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F HG C +G++C +SHD D P + C Y+Q+G+C YG RCRYEH KP + E
Sbjct: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYFQRGYCVYGDRCRYEHSKPLKQE 115
Query: 61 SAASSSSSVS--------------HPSRATSSGITKVPGVMPELSALSR------PFLPP 100
++ S + S P + A S F+P
Sbjct: 116 EVTATDLSAKPSLAASSSLSSGVGSLAEMNSGEAESRNPSFPTVGAGSEDWVNAIEFVPG 175
Query: 101 NKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155
C + S+ +E ++ + +C +AA G C GE C ++HGD+
Sbjct: 176 QPYCGRTAPSCTEVPPQGSVTKEESEKEPTTVETKKQLCPYAAVGECRYGENCVYLHGDS 235
Query: 156 CPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAA 211
C CG Q LHP +R +H+KSC E +K +E A++R++++ C +C++ V K +
Sbjct: 236 CDMCGLQVLHPVDAAQRSQHIKSCIEAHEKDMELSFAVQRTKDMVCGICMEVVYEKANPS 295
Query: 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271
ER+FG+LS C+H +C+ CIR WRS+ + +++CP CR S FVIPS W
Sbjct: 296 ERRFGILSNCNHTYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEK 351
Query: 272 EEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGS 327
EEKQ++I YK + + C++F+ G G+CPFG +CFYKHAY DGR EE + +G+
Sbjct: 352 EEKQKLIQKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGT 407
>sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus
GN=Mkrn2 PE=2 SV=2
Length = 416
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/361 (37%), Positives = 195/361 (54%), Gaps = 50/361 (13%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F HG C +G C FSHD + P+ IC YYQKG+C+YG+RCRY+H KP +
Sbjct: 3 TKQVTCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPPAAA 62
Query: 61 S---------AASSSSSVSHPSRATSSGITKVPGVMP-------------ELSALSRPFL 98
+ SS HPS ++ + + P L+ L+
Sbjct: 63 GGAVGPAPNPSPSSGLHSPHPSPDIATSVMRTHSNEPGKREKKTLVLRDRNLTGLAEDKT 122
Query: 99 PPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNC 142
PP+K N C+D + E+ +P + A R+ +C +AAAG C
Sbjct: 123 PPSKV--NNPGGCSDPQTSPEM-KPHSYLDAIRTGLDDLEASSSYSNEPQLCPYAAAGEC 179
Query: 143 PRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIECS 198
G+ C ++HGD C C Q LHPF PE+R+ H K C E + + A + SQ+ CS
Sbjct: 180 RFGDACVYLHGDMCEICRLQVLHPFDPEQRKAHEKMCMSTFEHEMEKAFAFQASQDKVCS 239
Query: 199 VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258
+C++ +L K +A+ER+FG+LS C H +C+SCIR WR + N +++CP CR +S
Sbjct: 240 ICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQFE----NPIIKSCPECRVIS 295
Query: 259 YFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLE 318
FVIPSV W +K E+I+++K + CK+F G G CPFG+ C Y+HAY DGRL
Sbjct: 296 EFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 355
Query: 319 E 319
E
Sbjct: 356 E 356
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 28/367 (7%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K V C++F HG C +GE+C +SHD IC ++QKG C++G RCRYEH KPS+ +
Sbjct: 19 TKHVTCRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQKGCCAFGDRCRYEHTKPSKQD 78
Query: 61 SAASSSSSV---SHPSRATSSGITKVPGVM------PELSAL-----SRPFLPPNKTAWN 106
SS S+ + P T ++ PG P+ S + F+P
Sbjct: 79 EVPSSKPSMPLTAAPLAGTPEPVSDGPGGTTGAQEKPQGSGAVDWVNAAEFVPGQPYCGR 138
Query: 107 PESVCNDS---LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQC 163
+ V + L +E ++ + K + +C +AA G C G C ++HGD C CG Q
Sbjct: 139 ADPVLCEGPGPLIEEEYEKEQANKEMKKQLCPYAAVGECRYGLNCAYLHGDVCDMCGLQV 198
Query: 164 LHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLS 219
LHP +R +H+++C E +K +E A++RS+++ C VC++ V K +ER+FG+LS
Sbjct: 199 LHPSDTSQRSQHIRACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKTNPSERRFGILS 258
Query: 220 ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIID 279
C H +C+ CIR WRS+ + +++CP CR S FVIPS W EEKQ++I
Sbjct: 259 NCCHCYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEDKEEKQQLIQ 314
Query: 280 SYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIR 339
YK + + C++F+ G G CPFG +CFYKHA+ DGRLEE + +GS ++ R
Sbjct: 315 KYKDGMGTKPCRYFDEGRGTCPFGANCFYKHAFPDGRLEEPQPQR--RQNGSNGRNRNTR 372
Query: 340 FTNLSQL 346
T+L L
Sbjct: 373 RTHLWDL 379
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 232 bits (592), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 187/331 (56%), Gaps = 16/331 (4%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGFCSYGSRCRYEHVKPSRS 59
+K V C++F HG C +G++C +SHD + P IC ++QKG C +G RCR++H KP+++
Sbjct: 19 TKHVTCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGERCRFDHCKPTKN 78
Query: 60 ESAASSSSSVSHPSRATSSGITKVPGVMPELS--ALSRPFLPPNKTAWNPESVCNDS--- 114
E +S ++ + P P+ A + F+P ESV +
Sbjct: 79 EEFSSPQMLPPSSPSPSTDPESSQPAPRPKTQDWANAAEFVPGQPYCGRAESVKVEISIP 138
Query: 115 -LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEERE 173
+E + D + + + +C +AA G C G C ++HGD C CG Q LHP +R
Sbjct: 139 LIEELDCDAAVDKEALRKQLCPYAAVGECRYGINCAYLHGDVCDMCGLQVLHPTDNSQRS 198
Query: 174 EHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC 229
+H K+C E +K +E A++RS+++ C VC++ V K +ER+FG+LS C+H +C+ C
Sbjct: 199 QHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCNHCYCLKC 258
Query: 230 IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKSID 289
IR WRS+ + +++CP CR S FVIPS W E+KQ++I YK +
Sbjct: 259 IRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEDKEDKQKLIQKYKDGMGRKP 314
Query: 290 CKHFNFGNGNCPFGTSCFYKHAYTDGRLEEV 320
C++F+ G G CPFG +CFYKHA+ DGRLEE
Sbjct: 315 CRYFDEGRGICPFGANCFYKHAFPDGRLEEA 345
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 184/334 (55%), Gaps = 22/334 (6%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGFCSYGSRCRYEHVKPSRS 59
+K V C++F HG C +G++C +SHD P +C ++QKG C +G RCR+EH KP++S
Sbjct: 19 TKHVTCRYFMHGLCKEGDNCRYSHDLTSSKPAAMMCKFFQKGNCVFGERCRFEHCKPTKS 78
Query: 60 ESAASSSSSV--SHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESV------- 110
E ++ + S P P + + A + F+P ESV
Sbjct: 79 EEVSNPQMLLLSSTPPPIDPECSESGPRLKTQDWANAAEFVPGQPYCGRAESVDVEISIP 138
Query: 111 CNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPE 170
+ L D + L+ + +C +AA G C G C ++HGD C CG Q LHP
Sbjct: 139 LIEELNGDATTDKEELR---KQLCPYAAVGECRYGVNCAYLHGDVCDMCGLQVLHPTDSS 195
Query: 171 EREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFC 226
+R EH K+C E +K +E A++RS+++ C VC++ V K +ER+FG+LS C H +C
Sbjct: 196 QRSEHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCSHCYC 255
Query: 227 ISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
+ CIR WRS+ + +++CP CR S FVIPS W E+KQ++I YK +
Sbjct: 256 LKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEDKEDKQKLIQKYKDGMG 311
Query: 287 SIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEV 320
C++F+ G G CPFG +CFYKHA+ DGRLEE
Sbjct: 312 RKPCRYFDEGRGICPFGANCFYKHAFPDGRLEEA 345
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/341 (37%), Positives = 194/341 (56%), Gaps = 33/341 (9%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYGSRCRYEHVKPSRSE 60
++ V C++F HG C +G +C +SHD + IC Y+Q+G C+YG RCRYEH KP + +
Sbjct: 35 TRHVTCRYFIHGVCKEGINCRYSHDLATSRSAMICRYFQRGCCAYGDRCRYEHNKPLQED 94
Query: 61 SAASS----SSSVSHPSRATSSGITKV---------PGVMPELSALSRPFLPPN-KTAWN 106
+ S S+ PS +S ++ P ++A+ F+P +
Sbjct: 95 PTGDTCTAPSESLPEPSGNINSKAAELAASELASGGPRAQDWVNAVE--FVPGQLYSGRA 152
Query: 107 PESVCNDSLENDEVDEPRNLKPAD----RSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQ 162
PE+ +++ DE E +PAD + +C +AA G C GE C ++HGD C CG Q
Sbjct: 153 PEAYTQGTVKPDEGRE----EPADPELKKQLCPYAAMGECRYGENCVYLHGDPCDMCGLQ 208
Query: 163 CLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLL 218
LHP +R +H+KSC E +K +E A++RS++I C +C++ V K +ER+FG+L
Sbjct: 209 VLHPVDTCQRSQHIKSCIEAHEKDMELSFAVQRSKDIVCGICMEVVYEKTNPSERRFGIL 268
Query: 219 SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEII 278
S C H +C+ CIR WRS+ + +++CP CR S F+IPS W EEK ++I
Sbjct: 269 SNCSHSYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFIIPSEYWVEEKEEKHKLI 324
Query: 279 DSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEE 319
YK + S C++F+ G G CPFG +CFY+HAY DGR+EE
Sbjct: 325 HKYKEAMSSKSCRYFDEGRGTCPFGGNCFYRHAYPDGRIEE 365
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 188/358 (52%), Gaps = 38/358 (10%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPP-NNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F +G C +G++C +SHD D +C Y+Q+G C YG RCR EH KP + E
Sbjct: 91 TKQVTCRYFKYGICKEGDNCRYSHDLSDRLCGVVCKYFQRGCCVYGDRCRCEHSKPLKQE 150
Query: 61 SAASSS----------------------SSVSHPSRATSSGITKVPGVMPELSALSRPFL 98
A ++ + + S+ T V G +A+ F+
Sbjct: 151 EATATELTTKSSLAASSSLSSIVGPLVEMNTNEAESRNSNFATVVAGSEDWANAIE--FV 208
Query: 99 PPNKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHG 153
P C + S+ +E +E + + +C +AA G C GE C ++HG
Sbjct: 209 PGQPYCGRTVPSCTEAPLQGSVTKEESEEEQTAVETKKQLCPYAAVGQCRYGENCVYLHG 268
Query: 154 DTCPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPT 209
D C CG Q LHP +R +H+++C E +K +E A++RS++ C +C++ V K
Sbjct: 269 DLCDMCGLQVLHPMDAAQRSQHIQACIEAHEKDMEFSFAVQRSKDKVCGICMEVVYEKAN 328
Query: 210 AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269
E +FG+LS C+H FC+ CIR WRS+ V ++CP CR S FVIPS W
Sbjct: 329 PNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIV----KSCPQCRITSNFVIPSEYWVE 384
Query: 270 TPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGS 327
EEKQ++I YK + + CK+F+ G G+CPFG +CFYKH Y DGR EE + +G+
Sbjct: 385 EKEEKQKLIQKYKEAMSNKACKYFDEGRGSCPFGENCFYKHMYPDGRREEPQRQQVGT 442
>sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio
GN=mkrn2 PE=2 SV=2
Length = 414
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/362 (37%), Positives = 185/362 (51%), Gaps = 53/362 (14%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F HG C +G C FSHD P+ IC YYQ+G C+YG RCRY+H+KP
Sbjct: 3 TKQVTCRYFLHGVCREGSRCLFSHDLTTSKPSTICKYYQRGACAYGDRCRYDHIKPPGRG 62
Query: 61 SAASSSSS-----------VSHPSRATSSGITKVPGVMPE--LSALSRPFLPPNKTAWNP 107
S A + S A +S K P V+ + L + SRP + ++
Sbjct: 63 SGAPADHSNRSSSSAGASAPGPGPPANTSKHLKKPLVLRDKALCSDSRPRVFSAES---- 118
Query: 108 ESVCNDSLE--NDEVDEPRNLKPADRS------------------------ICSFAAAGN 141
S N+ E +D +P + A RS IC F AAG
Sbjct: 119 -SELNECWEQRDDGAQKPHSYLEAIRSGLDASAAAAATAGTFPELQQTSPQICPFLAAGQ 177
Query: 142 CPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIEC 197
C GE CP++HG+ C C + LHP PE+R H K C E + A+++SQ+ C
Sbjct: 178 CQYGESCPYLHGEMCEICRQHVLHPHDPEQRAAHEKKCMVAFEMDMERAFAVQQSQDKVC 237
Query: 198 SVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257
+CLD V K + +ER+FG+LS C H +C++CIR WR N ++CP CR +
Sbjct: 238 KICLDVVYEKSSPSERRFGILSSCAHTYCLNCIRQWRCVEQLH----NQIRKSCPECRVV 293
Query: 258 SYFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRL 317
S FVIPS+ W E+K +I+ +KS + CK+F+ G G CPFG CFY HAY DGR
Sbjct: 294 SEFVIPSIYWVEDQEQKNLLIEEFKSGVSKKACKYFDQGRGTCPFGGKCFYMHAYADGRR 353
Query: 318 EE 319
E
Sbjct: 354 AE 355
>sp|Q6GLD9|MKRN2_XENTR Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus
tropicalis GN=mkrn2 PE=2 SV=1
Length = 418
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 195/386 (50%), Gaps = 52/386 (13%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKP---- 56
+K V C++F HG C +G C FSHD P+ +C +YQ+G C+YG+RCRY+HVKP
Sbjct: 3 TKHVTCRYFLHGVCREGGRCLFSHDLATSKPSTVCRFYQRGQCAYGARCRYDHVKPCNGS 62
Query: 57 -----SRSESAASSSSSVSHPSRATSSGITK-VPGVMPELSALSR--------------- 95
A S+ P++ ++ +TK P + S + R
Sbjct: 63 VFYPPQEMAPAPLESTPPLLPTQEAAAPVTKSAPQRREKKSVVLRDRDLCGASVEKAHPD 122
Query: 96 PFLPPNKTAWNP------------ESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCP 143
P L P A P E++C DE P A + +C FA AG C
Sbjct: 123 PALRPGCAADPPVSELEAKPHSYLEAICTGL---DETPIPSAYPDAPQQLCPFAQAGGCH 179
Query: 144 RGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIECSV 199
GE CP+IHG+ C CG Q LHP+ E+R H K C E+ + A + S+ CS+
Sbjct: 180 YGESCPYIHGNVCEICGLQVLHPYDQEQRGHHEKLCMANFERDMERAFAFQASEGKVCSI 239
Query: 200 CLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259
C++RV K + +ER+FG+LS C H +C++CIR WR + N +++CP CR +S
Sbjct: 240 CMERVYDKQSPSERRFGILSNCHHTYCLACIRQWRCARQFE----NPVIKSCPECRVISE 295
Query: 260 FVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDG-RLE 318
FVIPS W +K E+I+++K + CK+F+ G G CPFG C Y HAY DG R E
Sbjct: 296 FVIPSAYWVEDQSKKFELIEAFKQGMGKKACKYFDQGRGTCPFGGKCLYLHAYPDGTRAE 355
Query: 319 -EVVLRHLGSDDGSTVIAKDIRFTNL 343
E + LGS +G+ +R +
Sbjct: 356 PEKPRKQLGS-EGTVRFLNSVRLWDF 380
>sp|Q5NU13|MKRN2_TAKRU Probable E3 ubiquitin-protein ligase makorin-2 OS=Takifugu rubripes
GN=mkrn2 PE=2 SV=1
Length = 402
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 192/363 (52%), Gaps = 29/363 (7%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHD-WKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F HG C +G HC+FSHD P+ IC +YQ+G C+YG RCRY+HVK S
Sbjct: 3 TKQVTCRYFLHGVCREGNHCQFSHDPSSSKPSTICKFYQRGTCAYGERCRYDHVKLSSRG 62
Query: 61 SAASSSSSVSHP-SRATSSGITKVPGVMPELSALSRP---FLPPNKTAWNPESVCN---D 113
A + V A++ G K V E + R + A P + +
Sbjct: 63 GGAFDMAGVGGARDGASTRGAAKKTFVHQERENMFRAPAESFGADVMAPAPHTYVDAIRT 122
Query: 114 SLENDEVDE-PRNLKPADRSI---CSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRP 169
L + D P + ++ + C +AA G+C E C ++HGD C CG Q L P P
Sbjct: 123 GLSSSSQDHTPPTMAGVNQDLPRLCPYAAVGHCYYEENCIYLHGDKCEVCGLQVLDPHNP 182
Query: 170 EEREEHMKSC----EKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPF 225
E+R H K C E + A++ SQE CS+C++ V+ K ++R+FG+LS C H F
Sbjct: 183 EQRSMHEKMCLLAFEADMEKAFAVQLSQEKVCSICMEVVVQKMNPSDRRFGILSSCCHVF 242
Query: 226 CISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL 285
C++CIR WR + S N +++CP CR S FVIPSV W E+K +I+ +KS +
Sbjct: 243 CLACIRKWRCTRNFS----NKIIKSCPECRVASEFVIPSVYWEENQEDKVHLIELFKSGV 298
Query: 286 KSIDCKHFNFGNGNCPFGTSCFYKHAYTDG-RLE-EVVLRHLGSDDGSTVIAKDIRFTNL 343
CK+F+ G G+CPFG C Y HA DG R E E + LGS+ +IRF N
Sbjct: 299 GKKPCKYFDQGRGSCPFGGKCLYLHALPDGSRAEPEQPRKQLGSEG-------NIRFMNS 351
Query: 344 SQL 346
+L
Sbjct: 352 VRL 354
>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
quinqueradiata GN=mkrn2 PE=2 SV=1
Length = 423
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/384 (34%), Positives = 190/384 (49%), Gaps = 50/384 (13%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
+K+V C++F HG C +G C FSHD + P+ IC +YQ+G C+YG RCRY+H+KPS
Sbjct: 3 TKQVTCRYFLHGVCREGSRCLFSHDLNNSKPSTICKFYQRGVCAYGERCRYDHIKPSSRG 62
Query: 61 SAASS--------SSSVSHPSRATSSGITKVPGVMPE----------LSALSRPFLPPNK 102
+ + + G V G M + + + R F P
Sbjct: 63 GGGGAPEDQAGGGGAGGGGAGIGGAGGGPSVRGGMKKNLVLRDRVLGVDRVDRMFGAPAD 122
Query: 103 TAWNPESVCN-------------DSLENDEVDEP-----RNLKPADRSICSFAAAGNCPR 144
+ W+ S D+ D+ P +NL +C +AA G+C
Sbjct: 123 SMWSDVSTAAAPHSYVEAIRTGLDASAQDQATPPVCGPSQNLP----QLCPYAANGHCFY 178
Query: 145 GEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIECSVC 200
E C ++HGD C CG Q LHP E+R H K C E + A + SQ+ CS+C
Sbjct: 179 EENCTYLHGDLCEVCGLQVLHPHDSEQRRAHEKMCLAAFEADMEKAFAAQLSQDKVCSIC 238
Query: 201 LDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260
++ V+ K ++R+FG+LS C H FC++CIR WR + S NT +++CP CR +S F
Sbjct: 239 MEVVVQKANPSDRRFGILSSCCHTFCLACIRKWRCTRTFS----NTIIKSCPECRVVSEF 294
Query: 261 VIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDG-RLEE 319
VIPSV W E+K +ID +KS + CK+F+ G G+CPFG C Y HA+ DG R E
Sbjct: 295 VIPSVYWVEDQEDKDHLIDLFKSGVSKKACKYFDQGRGSCPFGGKCLYLHAFPDGTRAEP 354
Query: 320 VVLRHLGSDDGSTVIAKDIRFTNL 343
R S +G+ +R +
Sbjct: 355 DRPRKQLSSEGNVRFMNSVRLWDF 378
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 214 bits (544), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 188/378 (49%), Gaps = 45/378 (11%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKPSRS-- 59
K+V C++F HG C +G C FSHD P+ +C ++ +G C+YG+RCRY+HVKP
Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLATSKPSTVCRFFLRGQCAYGTRCRYDHVKPCNGTV 63
Query: 60 ------------------ESAASSSSSVSHPSRATSS----------GITKVPGVMPELS 91
A+ ++ P R G + P + P
Sbjct: 64 FIPPQEMSPVLSPPPLFPAQEAAVPPTIPAPQRREKKTLVLRDRDLCGASVDPALQPGCI 123
Query: 92 ALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHI 151
S+ K E++C DE +P + A + +C FA AG C G+ CP++
Sbjct: 124 TESQGSEGEAKPHSYLEAICTGL---DESQDPASYPGAPQQLCPFAQAGECHCGDSCPYL 180
Query: 152 HGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIECSVCLDRVLSK 207
HGD C CG Q LHP E+R +H K C E + A++ S+ CS+C++RV K
Sbjct: 181 HGDACEICGLQVLHPHDQEQRRDHEKLCMENFELDMERAFAVQASEGRVCSICMERVYEK 240
Query: 208 PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIW 267
+ A+R+F +LS+C+H +C++CIR WR + N +++CP CR +S FVIPS W
Sbjct: 241 QSPAQRRFRILSDCNHTYCLTCIRQWRCARQFD----NPVIKSCPECRVISEFVIPSAYW 296
Query: 268 YYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLE--EVVLRHL 325
+K E+I+++K + CK+F+ G G CPFG C Y H+Y DG E + L
Sbjct: 297 VEDQSKKDELIEAFKQGMGKKLCKYFDQGRGTCPFGGKCLYLHSYPDGTRAQPEKPRKQL 356
Query: 326 GSDDGSTVIAKDIRFTNL 343
GS +GS +R +
Sbjct: 357 GS-EGSVRFLNSLRLWDF 373
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 172/336 (51%), Gaps = 30/336 (8%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICT---YYQKGFCSYGSRCRYEHVKPSR 58
+K+++C+++ HG C +GE+C +SHD + T G + G H++P
Sbjct: 96 TKQIICRYYIHGQCKEGENCRYSHDLSG--RKMATEGGVSPPGASAGGGPSTAAHIEPPT 153
Query: 59 SESA----ASSSSSVSHPSRATSSGITKV----------PGVMPELSALSRPFLP--PNK 102
E A A+SS S+ A G + G E A + F+P P +
Sbjct: 154 QEVAEAPPAASSLSLPVIGSAAERGFFEAERDNADRGAAGGAGVESWADAIEFVPGQPYR 213
Query: 103 TAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQ 162
W S L++ E + + + C +A+ G C RGE C ++HGD C CG Q
Sbjct: 214 GRWV-ASAPEAPLQSSETERKQMAVGSGLRFCYYASRGVCFRGESCMYLHGDICDMCGLQ 272
Query: 163 CLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLL 218
LHP +REEHM++C E +K +E A++R + C +C++ V K +R+FG+L
Sbjct: 273 TLHPMDAAQREEHMRACIEAHEKDMELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGIL 332
Query: 219 SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEII 278
S C+H FCI CIR WRS+ N +++CP CR S VIPS W EEKQ++I
Sbjct: 333 SNCNHSFCIRCIRRWRSARQFE----NRIVKSCPQCRVTSELVIPSEFWVEEEEEKQKLI 388
Query: 279 DSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTD 314
YK + + C++F G GNCPFG +CFYKH Y +
Sbjct: 389 QQYKEAMSNKACRYFAEGRGNCPFGDTCFYKHEYPE 424
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 114/186 (61%), Gaps = 8/186 (4%)
Query: 134 CSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---AL 189
C +AA G C RG++C + HG+ C CG+Q LHP+ ++E H ++C E ++ +E A+
Sbjct: 280 CRYAARGQCLRGDRCAYPHGEICDMCGQQALHPWDAAQQEAHRRACVEAHERDMELSFAV 339
Query: 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALR 249
+RS + C +C++ V K ++R+FG+L C+H +C+ CIR WRS++ N +
Sbjct: 340 QRSMDKVCGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRSATQFE----NRISK 395
Query: 250 ACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYK 309
+CP CR S FVIPS W EEK++++ YK + C++F G G+CPFG CFYK
Sbjct: 396 SCPQCRVSSGFVIPSEFWVEEEEEKEKLVQQYKEGMSQKACRYFAGGLGHCPFGEFCFYK 455
Query: 310 HAYTDG 315
H Y +G
Sbjct: 456 HEYPEG 461
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 21/25 (84%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHD 26
+K++LC+++ HG C +G++C +SHD
Sbjct: 93 TKQILCRYYLHGQCKEGDNCRYSHD 117
>sp|Q8V571|P28_MONPV E3 ubiquitin-protein ligase p28-like OS=Monkeypox virus GN=p28 PE=3
SV=1
Length = 242
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
K+ + R S+E EC +C + V SK +R FGLL C+H FCI+CI W + +G
Sbjct: 160 KYEDMYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETG-- 217
Query: 244 VNTALRACPICR 255
AL CPICR
Sbjct: 218 ---ALDNCPICR 226
>sp|P41000|CPS3_SCHPO Protein cps3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cps3 PE=1 SV=3
Length = 583
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKP 56
+ V CKFF G C G++C FSHD + IC Y+QKG C +GS+C EHV P
Sbjct: 37 QHVPCKFFRQGTCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEHVLP 91
>sp|Q8QN38|P28_CWPXB E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain
Brighton Red) GN=p28 PE=3 SV=1
Length = 242
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
K+ E R S+E EC +C + V SK +R FGLL C+H FCI+CI W + +G
Sbjct: 160 KYEEVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGAS 219
Query: 244 VNTALRACPICR 255
N CPICR
Sbjct: 220 DN-----CPICR 226
>sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain
LC16m8) GN=p28 PE=3 SV=1
Length = 239
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
K+ + R S+E EC +C + V SK +R FGLL C+H FCI+CI W + +G
Sbjct: 157 KYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHKTRRETGAS 216
Query: 244 VNTALRACPICR 255
N CPICR
Sbjct: 217 DN-----CPICR 223
>sp|Q49PZ0|P28_VACC0 E3 ubiquitin ligase p28-like OS=Vaccinia virus (strain LC16m0)
GN=p28 PE=3 SV=1
Length = 239
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
K+ + R S+E EC +C + V SK +R FGLL C+H FCI+CI W + +G
Sbjct: 157 KYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHKTRRETGAS 216
Query: 244 VNTALRACPICR 255
N CPICR
Sbjct: 217 DN-----CPICR 223
>sp|P87607|P28_CWPXG E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain GRI-90
/ Grishak) GN=p28 PE=3 SV=1
Length = 242
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
K+ + R S+E EC +C + V SK +R FGLL C+H FCI+CI W + +G
Sbjct: 160 KYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGAS 219
Query: 244 VNTALRACPICR 255
N CPICR
Sbjct: 220 DN-----CPICR 226
>sp|Q85318|P28_ECTVM E3 ubiquitin-protein ligase p28 OS=Ectromelia virus (strain Moscow)
GN=p28 PE=3 SV=1
Length = 241
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
K+ + R S+E EC +C + V SK +R FGLL C+H FCI+CI W + +G
Sbjct: 159 KYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGAS 218
Query: 244 VNTALRACPICR 255
N CPICR
Sbjct: 219 DN-----CPICR 225
>sp|Q76R05|P28_VAR67 E3 ubiquitin-protein ligase p28-like OS=Variola virus (isolate
Human/India/Ind3/1967) GN=p28 PE=3 SV=1
Length = 242
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
K+ + + S+E EC +C + V SK +R FGLL C+H FCI+CI W + +G
Sbjct: 160 KYEDVYKVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGAS 219
Query: 244 VNTALRACPICR 255
N CPICR
Sbjct: 220 DN-----CPICR 226
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 4 RVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEH 53
+ +CK+F G C+KG+HC+F+HD + + +C YY +G+C+ G C Y H
Sbjct: 273 KQICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMH 323
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGF-CSYGSRCRYEH 53
K+ +CK++ G C KGE+C + H C +Y G C G +C++ H
Sbjct: 301 KKEVCKYYLQGYCTKGENCIYMHS-----EFPCKFYHSGAKCYQGDKCKFSH 347
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKPSRSES 61
+ V CKFF +G C GE+C FSH + + P IC Y+ KG C +G +C H P +
Sbjct: 43 QHVPCKFFRNGTCTAGENCPFSHSLETERP--ICKYFLKGNCKFGPKCALSHALPGNTN- 99
Query: 62 AASSSSSVSHPSRATSSGITKVPG-------VMPELSALSRPFLPPNKTAWNPESVCNDS 114
+ +S+ + S A + G + V + P LS+ KT NP N++
Sbjct: 100 LPNGTSTNTMASMAANGGASSVASKQMGANQISPSLSS---------KTMKNPADKANNT 150
Query: 115 LEND 118
D
Sbjct: 151 TATD 154
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
GN=ZC3H4 PE=1 SV=3
Length = 1303
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 4 RVLCKFFAHGACLKGEHCEFSHDWKDPPN-NICTYYQKGFCSYGSRCRYEH 53
+V+CK+F G C G+HC FSHD + P +C +Y GFC+ C Y H
Sbjct: 393 KVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMH 443
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 128 PADRSICSFAAAGNCPRGEKCPHIHGD 154
P R +C F G C R E CP++HGD
Sbjct: 419 PKKRELCKFYITGFCARAENCPYMHGD 445
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEH 53
KR LCKF+ G C + E+C + H D P + Y+ G C G C + H
Sbjct: 421 KRELCKFYITGFCARAENCPYMH--GDFPCKL--YHTTGNCINGDDCMFSH 467
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus
GN=Zc3h4 PE=1 SV=2
Length = 1304
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 4 RVLCKFFAHGACLKGEHCEFSHDWKDPPN-NICTYYQKGFCSYGSRCRYEH 53
+V+CK+F G C G+HC FSHD + P +C +Y GFC+ C Y H
Sbjct: 392 KVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMH 442
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 128 PADRSICSFAAAGNCPRGEKCPHIHGD 154
P R +C F G C R E CP++HGD
Sbjct: 418 PKKRELCKFYITGFCARAENCPYMHGD 444
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICT-YYQKGFCSYGSRCRYEH 53
KR LCKF+ G C + E+C + H + C Y+ G C G C + H
Sbjct: 420 KRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSH 466
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 4 RVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEH 53
+ +CK+F G C+KG+ C+F HD + + IC +Y +G+C+ G C Y H
Sbjct: 275 KQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 325
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGF-CSYGSRCRYEH 53
++ +CKF+ G C KGE+C + H+ C +Y G C G C++ H
Sbjct: 303 RKEICKFYLQGYCTKGENCIYMHN-----EFPCKFYHSGAKCYQGDNCKFSH 349
>sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein 8 OS=Mus musculus
GN=Zc3h8 PE=1 SV=2
Length = 305
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 RVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEH 53
+ +CK+F C+KG+ C+F HD + + +C YY +G+C+ G C Y H
Sbjct: 208 KQVCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLH 258
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGF-CSYGSRCRYEHV 54
K+ +CK++ G C KGE+C + H C +Y G C G C + H
Sbjct: 236 KKEMCKYYVQGYCTKGENCLYLHS-----EYPCKFYHTGTKCYQGDHCNFSHA 283
>sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1
Length = 215
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPS 57
S +++CK + G C KG+HCEF H++ C +Y K G+C+ S C Y HV P
Sbjct: 66 SNKIVCKHWLRGLCKKGDHCEFLHEYNLRKMPECLFYSKNGYCTQTSECLYLHVDPQ 122
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSH 25
+RVLC + +G C KG CEF+H
Sbjct: 148 RRVLCPLYLYGFCPKGPECEFTH 170
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens
GN=ZC3H8 PE=1 SV=2
Length = 291
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4 RVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEH 53
+ +CK+F C+KG+ C+F HD + + +C +Y +G+C+ G C Y H
Sbjct: 194 KQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 244
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGF-CSYGSRCRYEHV 54
K+ +CKF+ G C +GE+C + H+ + P C +Y G C G C++ H
Sbjct: 222 KKEMCKFYVQGYCTRGENCLYLHN--EYP---CKFYHTGTKCYQGEYCKFSHA 269
>sp|Q02799|LEE1_YEAST Zinc finger protein LEE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LEE1 PE=4 SV=1
Length = 301
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 5 VLCKFFAHGACLKGEHCEFSH--DWKDPPNNI-CTYYQKGFCSYGSRCRYEHVKPS 57
V CKFF G C G C FSH D NN+ C Y+ KG C +G++C HV P+
Sbjct: 91 VPCKFFKMGNCQAGSSCPFSHSPDIISSANNLPCKYFAKGNCKFGNKCVNAHVLPN 146
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPS 57
++CK + G C KGEHCEF H++ C ++ + G+CS G C Y H+ P
Sbjct: 77 LVCKHWLRGLCKKGEHCEFLHEYNLRKMPECNFFMRNGYCSNGDECLYLHIDPQ 130
>sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=YTH1 PE=3 SV=2
Length = 223
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSRSE 60
S +++CK + G C K +HCEF H++ C +Y K GFC+ C Y HV P
Sbjct: 66 SNKIVCKHWLRGLCKKNDHCEFLHEYNLRKMPECLFYSKNGFCTQTPECLYLHVDPQSKI 125
Query: 61 SAASS 65
SS
Sbjct: 126 PPCSS 130
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 6 LCKFFAHGACLKGEHCEFSHD----WKDPPNNICTYYQKGFCSYGSRCRYEH 53
+C F+ HG C +G C+FSHD K P CT+Y +G C G C Y+H
Sbjct: 434 VCHFYLHGKCQQGNLCKFSHDTTPLTKSKP---CTHYARGSCLKGDDCPYDH 482
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 1 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNIC-TYYQKGFCSYGSRCRYEHV----- 54
++K C +A G+CLKG+ C + H+ P C + + G C G +C++ HV
Sbjct: 458 LTKSKPCTHYARGSCLKGDDCPYDHELSKYP---CHNFMENGMCIRGDKCKFSHVIPTAE 514
Query: 55 KPSRSESAASSSSSV 69
PS ++ S++SSV
Sbjct: 515 GPSTPDAKKSNASSV 529
>sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=yth1 PE=3 SV=1
Length = 170
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYY-QKGFCSYGSRCRYEHVKPSRS 59
V+CK + G C KGE C+F H++ C +Y ++G+CS G C Y H+ PS+
Sbjct: 52 VVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQ 107
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 7 CKFFAHGACLKGEHCEFSHDW-KDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASS 65
C +FA +C+KG+ C F HD K P NN T KGFC G C + H +S S S
Sbjct: 385 CCYFATQSCMKGDDCPFDHDLSKYPCNNFIT---KGFCYRGDSCLFSHKGTPQSASDTPS 441
Query: 66 SSSVSHPSRATSS--------------GITKVPGVMPELSALSRPFLPP 100
++ ++ T++ I K+P + +S+ S FL P
Sbjct: 442 ANVTVSSTKITAASFSPQKTKKQSVRDAIAKLPAIQARVSS-SVAFLKP 489
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 7 CKFFAHGACLKGEHCEFSHDWKDPPNNICT---YYQKGFCSYGSRCRYEH 53
C+ + G C +G+ C+FSHD P C+ Y+ C G C ++H
Sbjct: 356 CRHYLKGRCHEGDKCKFSHDTI--PETKCSPCCYFATQSCMKGDDCPFDH 403
>sp|Q805K3|P28B_VACCW Zinc finger-containing protein P28b OS=Vaccinia virus (strain
Western Reserve) GN=VACWR012 PE=3 SV=1
Length = 62
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 209 TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255
T +R FGLL C H FCI+CI W + +G N CPICR
Sbjct: 5 TQNDRYFGLLDSCTHIFCITCINIWHKTRRETGASDN-----CPICR 46
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 4 RVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPS 57
+++CK + G C KG +CEF H++ C +Y K GFC+ C+Y H+ P+
Sbjct: 57 KIVCKHWLRGLCKKGLNCEFLHEYNLQKMPECQFYVKNGFCTQSPDCQYLHIDPA 111
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYY-QKGFCSYGSRCRYEHVKP 56
++CK + G C KGE CEF H++ C ++ + G+CS G C Y H+ P
Sbjct: 97 LVCKHWLRGLCKKGESCEFLHEYNLRKMPECNFFVRNGYCSNGDECLYLHIDP 149
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 128 PADRSICSFAAAGNCPRGEKCPHIH 152
PADR IC A+GNCP CP H
Sbjct: 51 PADRPICKAYASGNCPLKSHCPERH 75
>sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=YTH1 PE=3 SV=1
Length = 209
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKP 56
+++CK + G C K ++CE+ H++ C +Y K GFC+ C+Y H+ P
Sbjct: 62 FQNKIVCKHWLRGLCKKNDNCEYLHEYNLRKMPECVFYAKNGFCTQSPECQYLHIDP 118
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo
sapiens GN=CPSF4 PE=1 SV=1
Length = 269
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 28/81 (34%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWK--------------------------DPPNNI-- 34
K V+CK + G C KG+ CEF H++ DP + I
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 35 CTYYQKGFCSYGSRCRYEHVK 55
C +Y +GFC +G CR+ H +
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR 144
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEH 53
S +C+FF AC KG C F H + +C ++ +G C G +C + H
Sbjct: 36 SGAAVCEFFLKAACGKGGMCPFRHISGE-KTVVCKHWLRGLCKKGDQCEFLH 86
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 28/81 (34%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWK--------------------------DPPNNI-- 34
K V+CK + G C KG+ CEF H++ DP + I
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 35 CTYYQKGFCSYGSRCRYEHVK 55
C +Y +GFC +G CR+ H +
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR 144
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEH 53
S +C+FF AC KG C F H + +C ++ +G C G +C + H
Sbjct: 36 SGAAVCEFFLKSACGKGGMCPFRHISGE-KTVVCKHWLRGLCKKGDQCEFLH 86
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 28/81 (34%)
Query: 3 KRVLCKFFAHGACLKGEHCEFSHDWK--------------------------DPPNNI-- 34
K V+CK + G C KG+ CEF H++ DP + I
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 35 CTYYQKGFCSYGSRCRYEHVK 55
C +Y +GFC +G CR+ H +
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR 144
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEH 53
S +C+FF AC KG C F H +C ++ +G C G +C + H
Sbjct: 36 SGAAVCEFFLKSACGKGGMCPFRH-ISGEKTVVCKHWLRGLCKKGDQCEFLH 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,077,550
Number of Sequences: 539616
Number of extensions: 5955958
Number of successful extensions: 21050
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 19594
Number of HSP's gapped (non-prelim): 1353
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)