Query 018703
Match_columns 351
No_of_seqs 348 out of 1813
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 100.0 1.7E-51 3.7E-56 399.2 11.0 302 25-346 1-312 (344)
2 PHA03096 p28-like protein; Pro 100.0 2.1E-32 4.5E-37 260.7 5.9 139 141-290 130-278 (284)
3 PHA02926 zinc finger-like prot 99.8 1.6E-21 3.5E-26 177.1 5.7 81 183-268 159-239 (242)
4 PHA02929 N1R/p28-like protein; 99.5 2.3E-14 5.1E-19 133.8 6.1 95 162-268 132-236 (238)
5 KOG1040 Polyadenylation factor 99.1 5E-11 1.1E-15 115.9 2.9 54 3-56 76-130 (325)
6 PF13639 zf-RING_2: Ring finge 99.0 9.5E-11 2.1E-15 81.5 2.3 44 195-255 1-44 (44)
7 PF15227 zf-C3HC4_4: zinc fing 98.9 6E-10 1.3E-14 77.1 2.8 42 197-254 1-42 (42)
8 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.7E-09 5.8E-14 76.2 2.8 49 193-261 1-50 (50)
9 PLN03208 E3 ubiquitin-protein 98.8 5.2E-09 1.1E-13 94.7 4.0 69 187-264 11-86 (193)
10 PF13923 zf-C3HC4_2: Zinc fing 98.7 9.6E-09 2.1E-13 69.6 2.5 39 197-254 1-39 (39)
11 KOG1492 C3H1-type Zn-finger pr 98.6 1.2E-08 2.7E-13 93.5 2.6 54 4-59 206-260 (377)
12 cd00162 RING RING-finger (Real 98.6 3E-08 6.5E-13 67.4 3.6 44 196-257 1-44 (45)
13 KOG1763 Uncharacterized conser 98.6 3.7E-09 7.9E-14 100.0 -1.9 58 285-349 154-220 (343)
14 PF00097 zf-C3HC4: Zinc finger 98.6 2.8E-08 6.1E-13 67.7 2.9 41 197-254 1-41 (41)
15 PF12678 zf-rbx1: RING-H2 zinc 98.6 2.2E-08 4.8E-13 77.4 2.6 51 193-255 18-73 (73)
16 COG5152 Uncharacterized conser 98.6 1.9E-08 4.2E-13 90.5 2.2 102 131-271 141-249 (259)
17 KOG0823 Predicted E3 ubiquitin 98.6 3.3E-08 7.1E-13 91.2 3.2 57 191-264 44-102 (230)
18 KOG0317 Predicted E3 ubiquitin 98.5 4.9E-08 1.1E-12 92.5 2.8 50 190-259 235-284 (293)
19 PF12861 zf-Apc11: Anaphase-pr 98.5 1.2E-07 2.6E-12 75.0 3.5 60 193-260 20-83 (85)
20 KOG0320 Predicted E3 ubiquitin 98.4 9.7E-08 2.1E-12 84.8 2.5 50 192-259 129-178 (187)
21 KOG1677 CCCH-type Zn-finger pr 98.4 2.9E-07 6.3E-12 90.0 6.0 95 5-155 87-202 (332)
22 COG5084 YTH1 Cleavage and poly 98.4 3.5E-07 7.7E-12 87.5 5.7 54 3-56 103-159 (285)
23 TIGR00599 rad18 DNA repair pro 98.4 2.9E-07 6.3E-12 92.1 4.5 67 191-282 23-89 (397)
24 KOG2164 Predicted E3 ubiquitin 98.4 3.2E-07 6.9E-12 92.9 4.5 76 189-283 181-259 (513)
25 PF14634 zf-RING_5: zinc-RING 98.3 3.5E-07 7.6E-12 63.6 2.9 44 196-256 1-44 (44)
26 COG5540 RING-finger-containing 98.3 5.2E-07 1.1E-11 86.0 3.7 56 187-258 316-371 (374)
27 COG5243 HRD1 HRD ubiquitin lig 98.3 1.1E-06 2.4E-11 85.9 5.7 58 191-260 284-346 (491)
28 smart00504 Ubox Modified RING 98.3 9.7E-07 2.1E-11 65.3 4.1 46 194-259 1-46 (63)
29 KOG2494 C3H1-type Zn-finger pr 98.3 2.1E-06 4.6E-11 82.8 7.1 54 4-58 37-96 (331)
30 KOG1492 C3H1-type Zn-finger pr 98.2 6E-07 1.3E-11 82.6 2.9 85 2-158 231-316 (377)
31 KOG1677 CCCH-type Zn-finger pr 98.2 1E-06 2.2E-11 86.2 3.9 57 3-59 131-205 (332)
32 KOG4628 Predicted E3 ubiquitin 98.2 7.5E-07 1.6E-11 87.4 2.8 54 195-264 230-283 (348)
33 smart00184 RING Ring finger. E 98.1 1.7E-06 3.7E-11 56.5 2.8 39 197-254 1-39 (39)
34 COG5252 Uncharacterized conser 98.1 5.1E-07 1.1E-11 83.3 -1.4 55 288-349 142-205 (299)
35 KOG0287 Postreplication repair 98.0 2.1E-06 4.5E-11 83.1 2.0 45 195-259 24-68 (442)
36 COG5574 PEX10 RING-finger-cont 98.0 3.2E-06 7E-11 79.4 2.5 49 192-259 213-262 (271)
37 PF04564 U-box: U-box domain; 97.9 1.4E-05 3.1E-10 61.5 5.1 66 193-284 3-70 (73)
38 PF13445 zf-RING_UBOX: RING-ty 97.9 4.9E-06 1.1E-10 57.8 2.2 35 197-237 1-35 (43)
39 TIGR00570 cdk7 CDK-activating 97.9 1E-05 2.2E-10 78.3 5.0 54 193-260 2-55 (309)
40 KOG4172 Predicted E3 ubiquitin 97.9 1.5E-06 3.2E-11 62.8 -0.6 51 192-262 5-57 (62)
41 KOG0802 E3 ubiquitin ligase [P 97.9 4.5E-06 9.6E-11 87.3 2.3 52 190-256 287-338 (543)
42 PF00642 zf-CCCH: Zinc finger 97.9 2.8E-06 6.2E-11 53.1 0.2 24 3-26 2-26 (27)
43 PF14835 zf-RING_6: zf-RING of 97.8 4.6E-06 1E-10 62.4 0.6 45 193-258 6-50 (65)
44 KOG1763 Uncharacterized conser 97.8 2.4E-06 5.3E-11 81.1 -1.7 56 3-58 91-193 (343)
45 KOG2177 Predicted E3 ubiquitin 97.8 1.9E-05 4.1E-10 73.2 4.3 69 190-285 9-77 (386)
46 smart00356 ZnF_C3H1 zinc finge 97.8 1.4E-05 3E-10 49.3 2.1 24 3-26 3-26 (27)
47 KOG1040 Polyadenylation factor 97.7 3E-05 6.6E-10 75.8 3.6 55 2-56 103-158 (325)
48 PF11793 FANCL_C: FANCL C-term 97.7 1.3E-05 2.9E-10 61.4 0.7 65 194-259 2-66 (70)
49 COG5194 APC11 Component of SCF 97.6 5.2E-05 1.1E-09 59.0 2.8 55 195-261 21-83 (88)
50 PF00642 zf-CCCH: Zinc finger 97.5 1.5E-05 3.4E-10 49.8 -0.8 25 31-55 2-27 (27)
51 KOG1813 Predicted E3 ubiquitin 97.5 2.4E-05 5.3E-10 74.6 -0.0 96 132-259 187-286 (313)
52 smart00356 ZnF_C3H1 zinc finge 97.5 9.4E-05 2E-09 45.5 2.5 25 31-55 3-27 (27)
53 KOG4791 Uncharacterized conser 97.3 0.00022 4.7E-09 72.0 4.2 24 132-155 119-142 (667)
54 COG5432 RAD18 RING-finger-cont 97.2 0.00014 3.1E-09 69.3 2.0 52 195-266 26-78 (391)
55 KOG2494 C3H1-type Zn-finger pr 97.2 0.00014 3E-09 70.4 1.0 25 32-56 37-62 (331)
56 KOG0311 Predicted E3 ubiquitin 97.0 8E-05 1.7E-09 72.7 -2.0 48 193-258 42-89 (381)
57 KOG0978 E3 ubiquitin ligase in 97.0 0.00022 4.8E-09 75.7 0.9 48 193-259 642-689 (698)
58 KOG0804 Cytoplasmic Zn-finger 96.9 0.00036 7.8E-09 70.1 1.0 50 191-259 172-222 (493)
59 KOG0824 Predicted E3 ubiquitin 96.8 0.00058 1.3E-08 65.5 2.0 50 191-259 4-53 (324)
60 KOG4791 Uncharacterized conser 96.7 0.00045 9.8E-09 69.8 0.4 51 5-56 4-55 (667)
61 COG5063 CTH1 CCCH-type Zn-fing 96.6 0.0029 6.3E-08 60.9 5.2 53 5-57 231-300 (351)
62 COG5084 YTH1 Cleavage and poly 96.6 0.0038 8.3E-08 60.1 5.9 53 4-56 134-190 (285)
63 COG5252 Uncharacterized conser 96.6 0.00024 5.2E-09 65.9 -2.4 55 3-57 84-177 (299)
64 KOG1493 Anaphase-promoting com 96.5 0.0006 1.3E-08 52.7 -0.2 36 217-260 47-82 (84)
65 KOG1645 RING-finger-containing 96.4 0.0032 6.9E-08 62.8 4.2 54 194-260 4-57 (463)
66 KOG2660 Locus-specific chromos 96.4 0.0013 2.7E-08 64.0 1.4 57 190-265 11-67 (331)
67 KOG0825 PHD Zn-finger protein 96.4 0.0013 2.8E-08 69.9 1.6 69 195-280 124-199 (1134)
68 KOG0828 Predicted E3 ubiquitin 96.3 0.0018 3.8E-08 65.9 1.5 55 193-258 570-633 (636)
69 KOG4159 Predicted E3 ubiquitin 96.3 0.0031 6.7E-08 63.6 3.2 75 192-287 82-157 (398)
70 KOG1595 CCCH-type Zn-finger pr 96.3 0.0064 1.4E-07 62.6 5.4 54 4-60 236-296 (528)
71 COG5219 Uncharacterized conser 96.2 0.003 6.4E-08 68.5 3.1 62 187-261 1462-1525(1525)
72 KOG1595 CCCH-type Zn-finger pr 96.1 0.0049 1.1E-07 63.4 3.7 51 3-56 200-260 (528)
73 KOG4265 Predicted E3 ubiquitin 95.9 0.0053 1.1E-07 60.4 2.7 47 193-259 289-336 (349)
74 KOG0297 TNF receptor-associate 95.8 0.0043 9.3E-08 62.6 2.0 50 191-260 18-68 (391)
75 KOG0827 Predicted E3 ubiquitin 95.8 0.0044 9.6E-08 61.4 2.0 52 194-258 4-55 (465)
76 PF14608 zf-CCCH_2: Zinc finge 95.8 0.0055 1.2E-07 35.2 1.5 18 6-25 1-18 (19)
77 smart00744 RINGv The RING-vari 95.6 0.013 2.7E-07 41.8 3.1 44 196-255 1-49 (49)
78 COG5222 Uncharacterized conser 95.6 0.039 8.5E-07 53.2 7.2 107 195-343 275-381 (427)
79 KOG2185 Predicted RNA-processi 95.3 0.0068 1.5E-07 60.4 1.3 26 4-29 140-165 (486)
80 KOG2333 Uncharacterized conser 95.3 0.0077 1.7E-07 61.5 1.6 54 4-57 76-140 (614)
81 KOG1941 Acetylcholine receptor 95.3 0.016 3.4E-07 57.7 3.6 51 192-256 363-413 (518)
82 PF11789 zf-Nse: Zinc-finger o 95.2 0.013 2.9E-07 43.1 2.1 46 191-253 8-53 (57)
83 KOG2930 SCF ubiquitin ligase, 95.0 0.014 3E-07 47.8 1.9 29 220-259 80-108 (114)
84 KOG1952 Transcription factor N 94.9 0.027 5.8E-07 60.8 4.1 62 189-259 186-247 (950)
85 KOG1734 Predicted RING-contain 94.8 0.0096 2.1E-07 56.6 0.5 67 191-268 221-291 (328)
86 KOG2185 Predicted RNA-processi 94.8 0.016 3.5E-07 57.9 2.1 25 32-56 140-164 (486)
87 PF14608 zf-CCCH_2: Zinc finge 94.6 0.026 5.6E-07 32.3 1.9 19 34-54 1-19 (19)
88 KOG1814 Predicted E3 ubiquitin 94.5 0.037 8E-07 55.5 3.8 58 193-259 183-240 (445)
89 KOG2879 Predicted E3 ubiquitin 94.3 0.03 6.6E-07 53.4 2.7 54 189-259 234-287 (298)
90 KOG1785 Tyrosine kinase negati 94.3 0.019 4.2E-07 57.2 1.4 47 195-259 370-416 (563)
91 KOG1428 Inhibitor of type V ad 93.7 0.037 8E-07 62.6 2.2 66 190-262 3482-3547(3738)
92 KOG1002 Nucleotide excision re 93.5 0.029 6.2E-07 57.8 1.0 55 190-259 532-586 (791)
93 PF05883 Baculo_RING: Baculovi 93.1 0.045 9.7E-07 47.1 1.4 48 184-237 15-69 (134)
94 PF04641 Rtf2: Rtf2 RING-finge 92.5 0.22 4.8E-06 47.4 5.4 71 191-281 110-182 (260)
95 PF14570 zf-RING_4: RING/Ubox 91.9 0.16 3.5E-06 36.1 2.7 47 197-258 1-47 (48)
96 KOG1812 Predicted E3 ubiquitin 91.7 0.1 2.2E-06 52.7 2.1 56 194-260 146-202 (384)
97 KOG2932 E3 ubiquitin ligase in 91.6 0.056 1.2E-06 52.4 0.2 35 213-260 101-135 (389)
98 PF07800 DUF1644: Protein of u 91.0 0.26 5.6E-06 43.6 3.7 14 247-260 79-92 (162)
99 PF10650 zf-C3H1: Putative zin 89.9 0.22 4.9E-06 30.0 1.6 19 34-53 2-21 (23)
100 KOG3799 Rab3 effector RIM1 and 89.1 0.38 8.3E-06 41.4 3.1 64 192-268 63-127 (169)
101 PF10272 Tmpp129: Putative tra 88.9 0.28 6E-06 49.0 2.5 67 190-259 267-351 (358)
102 KOG1039 Predicted E3 ubiquitin 88.9 0.15 3.3E-06 50.6 0.6 25 5-29 9-33 (344)
103 KOG4739 Uncharacterized protei 88.4 0.18 3.8E-06 47.4 0.7 46 195-260 4-49 (233)
104 PF10650 zf-C3H1: Putative zin 88.4 0.27 5.8E-06 29.6 1.2 20 5-25 1-21 (23)
105 COG5063 CTH1 CCCH-type Zn-fing 88.1 0.44 9.5E-06 46.3 3.2 57 3-59 273-342 (351)
106 COG5152 Uncharacterized conser 88.1 0.19 4.2E-06 45.9 0.7 24 33-56 142-166 (259)
107 KOG4692 Predicted E3 ubiquitin 88.0 0.32 6.9E-06 48.1 2.1 53 190-262 418-470 (489)
108 KOG4275 Predicted E3 ubiquitin 86.2 0.11 2.4E-06 50.1 -2.1 43 194-260 300-343 (350)
109 KOG2333 Uncharacterized conser 85.9 0.34 7.3E-06 49.9 1.1 25 32-56 76-103 (614)
110 KOG4185 Predicted E3 ubiquitin 85.5 0.84 1.8E-05 43.9 3.6 52 194-258 3-54 (296)
111 KOG1571 Predicted E3 ubiquitin 85.1 0.33 7.2E-06 48.0 0.6 50 191-263 302-351 (355)
112 KOG3039 Uncharacterized conser 85.0 0.97 2.1E-05 42.8 3.6 60 189-264 216-277 (303)
113 PF10367 Vps39_2: Vacuolar sor 83.2 0.52 1.1E-05 37.9 0.9 36 189-231 73-108 (109)
114 COG5236 Uncharacterized conser 82.6 1.1 2.4E-05 44.3 3.1 55 189-261 56-110 (493)
115 PHA02825 LAP/PHD finger-like p 81.9 1.8 3.9E-05 38.4 3.8 61 192-269 6-72 (162)
116 KOG1001 Helicase-like transcri 81.6 0.7 1.5E-05 50.0 1.4 46 195-259 455-500 (674)
117 KOG4362 Transcriptional regula 80.3 0.49 1.1E-05 50.7 -0.3 50 192-258 19-68 (684)
118 KOG4367 Predicted Zn-finger pr 79.2 0.94 2E-05 46.0 1.3 34 192-234 2-35 (699)
119 KOG3053 Uncharacterized conser 78.6 1.4 2.9E-05 42.0 2.1 71 191-269 17-92 (293)
120 COG5175 MOT2 Transcriptional r 78.4 1.8 3.9E-05 42.8 2.9 52 193-259 13-64 (480)
121 KOG1815 Predicted E3 ubiquitin 78.3 2.7 5.9E-05 43.1 4.4 60 191-259 67-126 (444)
122 TIGR00622 ssl1 transcription f 77.8 1.4 3E-05 36.9 1.7 90 153-255 15-110 (112)
123 KOG1940 Zn-finger protein [Gen 76.4 2.6 5.7E-05 40.6 3.4 97 189-315 153-255 (276)
124 PHA02862 5L protein; Provision 76.4 1.5 3.3E-05 38.3 1.6 48 194-260 2-54 (156)
125 KOG0826 Predicted E3 ubiquitin 76.3 1.6 3.5E-05 42.9 2.0 37 193-237 299-335 (357)
126 PF04423 Rad50_zn_hook: Rad50 75.0 0.89 1.9E-05 32.7 -0.1 27 250-287 22-48 (54)
127 PF14447 Prok-RING_4: Prokaryo 73.2 1.5 3.2E-05 32.1 0.6 45 194-260 7-51 (55)
128 PF08746 zf-RING-like: RING-li 73.1 3.2 7E-05 28.6 2.3 40 197-254 1-43 (43)
129 PF12906 RINGv: RING-variant d 73.0 2.5 5.4E-05 29.7 1.8 42 197-254 1-47 (47)
130 PF14569 zf-UDP: Zinc-binding 72.3 4.1 9E-05 31.9 2.9 61 192-264 7-67 (80)
131 COG5220 TFB3 Cdk activating ki 70.1 1.7 3.6E-05 41.1 0.4 57 190-259 6-64 (314)
132 KOG1813 Predicted E3 ubiquitin 69.9 1.5 3.1E-05 42.6 -0.0 24 33-56 187-211 (313)
133 KOG4445 Uncharacterized conser 68.2 1.9 4E-05 42.0 0.3 56 193-260 114-187 (368)
134 KOG3002 Zn finger protein [Gen 64.0 6.8 0.00015 38.3 3.3 67 193-296 47-115 (299)
135 KOG0298 DEAD box-containing he 63.9 2.5 5.4E-05 48.2 0.3 51 189-258 1148-1198(1394)
136 KOG0153 Predicted RNA-binding 63.3 3.4 7.4E-05 41.0 1.1 24 5-28 162-185 (377)
137 KOG3268 Predicted E3 ubiquitin 62.4 6.1 0.00013 35.8 2.4 65 194-260 165-229 (234)
138 KOG2034 Vacuolar sorting prote 61.4 4.1 8.8E-05 44.9 1.4 37 192-235 815-851 (911)
139 KOG0801 Predicted E3 ubiquitin 60.3 0.6 1.3E-05 41.5 -4.2 60 153-222 138-199 (205)
140 KOG3702 Nuclear polyadenylated 60.3 18 0.0004 38.7 5.8 25 131-158 625-649 (681)
141 KOG3800 Predicted E3 ubiquitin 59.2 9 0.00019 37.2 3.1 50 196-259 2-51 (300)
142 PF02891 zf-MIZ: MIZ/SP-RING z 58.2 5 0.00011 28.5 1.0 48 195-257 3-50 (50)
143 KOG2807 RNA polymerase II tran 56.6 8 0.00017 38.2 2.3 85 153-255 290-374 (378)
144 PF04710 Pellino: Pellino; In 56.0 3.8 8.2E-05 41.4 0.0 42 212-263 301-342 (416)
145 KOG3899 Uncharacterized conser 55.2 6.6 0.00014 38.2 1.5 38 221-259 325-365 (381)
146 KOG0825 PHD Zn-finger protein 52.2 9.5 0.00021 41.7 2.2 57 194-259 96-154 (1134)
147 KOG3970 Predicted E3 ubiquitin 49.8 39 0.00085 31.8 5.5 60 190-259 46-105 (299)
148 KOG0153 Predicted RNA-binding 49.6 8.3 0.00018 38.3 1.2 25 32-56 161-185 (377)
149 PF05290 Baculo_IE-1: Baculovi 47.9 29 0.00063 30.0 4.1 56 189-259 75-132 (140)
150 PF10571 UPF0547: Uncharacteri 47.5 12 0.00026 23.1 1.3 11 196-206 2-12 (26)
151 KOG2202 U2 snRNP splicing fact 45.0 9.5 0.00021 36.4 0.8 22 4-25 152-173 (260)
152 PF03854 zf-P11: P-11 zinc fin 36.7 15 0.00032 26.2 0.5 32 216-258 14-45 (50)
153 KOG3702 Nuclear polyadenylated 36.2 35 0.00075 36.7 3.4 52 5-62 586-652 (681)
154 KOG0006 E3 ubiquitin-protein l 35.9 24 0.00053 34.8 2.0 40 193-234 314-355 (446)
155 PLN02189 cellulose synthase 34.8 39 0.00084 38.4 3.6 65 192-269 32-96 (1040)
156 KOG1356 Putative transcription 34.6 10 0.00022 41.7 -0.8 34 194-234 229-262 (889)
157 PF10497 zf-4CXXC_R1: Zinc-fin 33.5 21 0.00046 29.4 1.1 35 222-258 37-71 (105)
158 PF06844 DUF1244: Protein of u 32.8 26 0.00056 26.7 1.3 14 224-237 11-24 (68)
159 PF07975 C1_4: TFIIH C1-like d 31.9 24 0.00052 25.4 1.0 13 218-230 24-36 (51)
160 smart00647 IBR In Between Ring 31.6 32 0.0007 24.5 1.7 40 195-235 19-60 (64)
161 KOG1100 Predicted E3 ubiquitin 30.5 23 0.00051 32.7 1.0 40 197-260 161-201 (207)
162 PLN02195 cellulose synthase A 30.3 57 0.0012 36.9 4.0 56 192-259 4-59 (977)
163 PLN02436 cellulose synthase A 30.3 51 0.0011 37.7 3.6 62 191-264 33-94 (1094)
164 KOG2202 U2 snRNP splicing fact 29.5 25 0.00054 33.6 0.9 26 34-59 154-179 (260)
165 PF14353 CpXC: CpXC protein 25.1 49 0.0011 27.7 1.9 30 250-279 3-33 (128)
166 PLN02915 cellulose synthase A 24.1 65 0.0014 36.7 3.1 66 193-271 14-79 (1044)
167 KOG1812 Predicted E3 ubiquitin 23.9 78 0.0017 32.0 3.4 42 192-237 304-345 (384)
168 PF01485 IBR: IBR domain; Int 22.8 10 0.00022 27.2 -2.4 20 216-235 41-60 (64)
169 PLN02638 cellulose synthase A 21.8 86 0.0019 35.9 3.5 65 193-270 16-80 (1079)
170 PLN02400 cellulose synthase 21.7 71 0.0015 36.6 2.8 67 191-270 33-99 (1085)
171 KOG4430 Topoisomerase I-bindin 21.6 31 0.00066 36.5 -0.0 64 185-264 251-314 (553)
172 KOG3161 Predicted E3 ubiquitin 21.0 44 0.00095 36.1 1.0 37 194-235 11-47 (861)
173 COG3809 Uncharacterized protei 20.9 88 0.0019 24.7 2.4 16 266-282 30-45 (88)
174 KOG2114 Vacuolar assembly/sort 20.6 1.6E+02 0.0034 33.0 5.0 41 195-257 841-881 (933)
175 PF05605 zf-Di19: Drought indu 20.4 1.1E+02 0.0025 21.5 2.8 37 155-203 4-40 (54)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=399.15 Aligned_cols=302 Identities=29% Similarity=0.578 Sum_probs=226.2
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCcCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCC-CCCCcccccCCCCCCCCCCC
Q 018703 25 HDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKV-PGVMPELSALSRPFLPPNKT 103 (351)
Q Consensus 25 H~~~~~~~~~C~~fl~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~s~~~t~~~~~~~-~~~~~~~~~~~~p~~~p~~~ 103 (351)
||++.....||+||++|.|.||+.|+|.|+.|.........+.++.++++. ..... -|...+ +.+
T Consensus 1 ~d~~~~~~tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~~~~-----------~~~ 66 (344)
T KOG1039|consen 1 HDLSLSQETICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAST---GLSQSLIWANAV-----------ADA 66 (344)
T ss_pred CccccccchhhhhcccccccccceeeeeccCchhhcccccccccccccccc---ccchhhcccchh-----------hcc
Confidence 677765558999999999999999999999995221111111111111000 00000 000000 011
Q ss_pred CCCCCCCCCCCccccccCCCCCCCCCCCccCchhhcCCCCCCCCCcccCCCCCCcCCcccccCCChHHHHHHHHHHH-H-
Q 018703 104 AWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE-K- 181 (351)
Q Consensus 104 ~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~C~~~~~G~C~~G~~C~~~Hg~~c~~c~~~~LhP~~~~~~~~h~~~c~-~- 181 (351)
.+.. +........+....+....+...++|+|...|.|.+|..|.++|++.|++|+.+.+||.+..|++.|++.|. .
T Consensus 67 s~~~-s~~~~~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~ 145 (344)
T KOG1039|consen 67 SATM-SVSSRPVLTAIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCA 145 (344)
T ss_pred cccc-chhcccchhhhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhccccccc
Confidence 1000 000000011111112222355568899999999999999999999999999999999999999999999983 3
Q ss_pred ---HHHHHHHHhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 182 ---KQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 182 ---~~~~~~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
..+..++++.+++.+||||||.|++|+ +++++||||+||+|+||++||++|+..+++ ..+++++||+||+.+
T Consensus 146 ~~~~~e~~~a~~~s~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 146 LSSAMERSFALQKSSEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPS 220 (344)
T ss_pred chHhhhhccCcCccccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCcc
Confidence 445678999999999999999999999 899999999999999999999999988876 568899999999999
Q ss_pred ceeecCcccccCchhHHHHHHHHHhhcCCCCCCcccCCCCCCCCCCCceeeccCCCCCcchhccc---cccCCCCCee-e
Q 018703 259 YFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLR---HLGSDDGSTV-I 334 (351)
Q Consensus 259 ~~vips~~w~~~~~ek~~li~~yk~~~~~~~c~~f~~~~g~Cpfg~~C~y~H~~~~g~~~~~~~r---~~~~~~~~~~-~ 334 (351)
.+|+|+.+||+++++|+++|++|+++|+.++|+||++|.|.||||+.|||+|.+|+|...++... +.....+.+. +
T Consensus 221 ~~v~pS~~Wv~t~~~k~~li~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (344)
T KOG1039|consen 221 SFVNPSSFWVETKEEKQKLIEEYEAEMSAKDCKYFSQGLGSCPFGSKCFYKHLLPSGASTDPGRQYSPRRPSNLNTYTNI 300 (344)
T ss_pred ccccccceeeeecccccccHHHHHHHhhccchhhhcCCCCCCCCCCccccccccccccccccCCCCcccccccCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999888621 1222233333 5
Q ss_pred ccccchhhhccc
Q 018703 335 AKDIRFTNLSQL 346 (351)
Q Consensus 335 ~~~~~l~~~~~~ 346 (351)
...+.++++++.
T Consensus 301 ~~~~~~~~~~~~ 312 (344)
T KOG1039|consen 301 LETTLTLRSLER 312 (344)
T ss_pred ccceeehhhhhh
Confidence 666666766665
No 2
>PHA03096 p28-like protein; Provisional
Probab=99.97 E-value=2.1e-32 Score=260.74 Aligned_cols=139 Identities=30% Similarity=0.538 Sum_probs=127.2
Q ss_pred CCCCCCCCcccCCCCCCcCCcccccCCChHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccCCcccccceeecCC
Q 018703 141 NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSE 220 (351)
Q Consensus 141 ~C~~G~~C~~~Hg~~c~~c~~~~LhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~ 220 (351)
.|.+|++|.|+||+.|++||+++|||+|++||.+|.++|...++..... .+|+||||.|++|+ +++++||+|++
T Consensus 130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~~~-----k~c~ic~e~~~~k~-~~~~~fgil~~ 203 (284)
T PHA03096 130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLLLS-----KICGICLENIKAKY-IIKKYYGILSE 203 (284)
T ss_pred hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHHHH-----hhcccchhhhhhhc-ccccccccccc
Confidence 5889999999999999999999999999999999999999988654332 88999999999998 78999999999
Q ss_pred CCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee----------ecCcccccCchhHHHHHHHHHhhcCCCCC
Q 018703 221 CDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV----------IPSVIWYYTPEEKQEIIDSYKSKLKSIDC 290 (351)
Q Consensus 221 C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v----------ips~~w~~~~~ek~~li~~yk~~~~~~~c 290 (351)
|+|.||+.||+.||..+. ...+.+.||.||..+.|| |||.+|+.++++|+.|+.+|+..+++++|
T Consensus 204 c~h~fc~~ci~~wr~~~~-----~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~~~~K~~l~~~yk~~~~~K~c 278 (284)
T PHA03096 204 IKHEFNIFCIKIWMTESL-----YKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDDKYDKNLLSFRYKKMHIRKVC 278 (284)
T ss_pred CCcHHHHHHHHHHHHhhh-----hcccCccccchhhHHHHHhhcchhhhccCCchhhhcChHHHHHHHHHHHHhhccccc
Confidence 999999999999999875 245667788888888888 99999999999999999999999999998
No 3
>PHA02926 zinc finger-like protein; Provisional
Probab=99.84 E-value=1.6e-21 Score=177.13 Aligned_cols=81 Identities=37% Similarity=0.723 Sum_probs=71.2
Q ss_pred HHHHHHHhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceee
Q 018703 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (351)
Q Consensus 183 ~~~~~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vi 262 (351)
.++..+.++|+|.+||||||.+++|+.+++|+||+|++|+|+||+.||++|++.++. .++.++||+||+.+.+|+
T Consensus 159 ~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~-----~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 159 DKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRE-----TGASDNCPICRTRFRNIT 233 (242)
T ss_pred HHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccc-----cCcCCcCCCCcceeeeec
Confidence 345667899999999999999999987899999999999999999999999987642 245689999999999999
Q ss_pred cCcccc
Q 018703 263 PSVIWY 268 (351)
Q Consensus 263 ps~~w~ 268 (351)
||.++-
T Consensus 234 pSrf~~ 239 (242)
T PHA02926 234 MSKFYK 239 (242)
T ss_pred ccccee
Confidence 998763
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.50 E-value=2.3e-14 Score=133.75 Aligned_cols=95 Identities=29% Similarity=0.572 Sum_probs=70.4
Q ss_pred ccccCCChHHHHHHHHH--HHH--------HHHHHHHHhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHH
Q 018703 162 QCLHPFRPEEREEHMKS--CEK--------KQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIR 231 (351)
Q Consensus 162 ~~LhP~~~~~~~~h~~~--c~~--------~~~~~~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~ 231 (351)
.++||.+-.++--|.+. ... ..+...+.+.+++.+|+||||.+.+++ ...+++++|++|+|+||.+||.
T Consensus 132 ~~~~~e~~~~~~~~~k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~ 210 (238)
T PHA02929 132 YMRKEEDMFYAIINKKGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECID 210 (238)
T ss_pred ccCChHHHHHHHHHHhcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCc-cccccceecCCCCCcccHHHHH
Confidence 35677666666656532 111 111122346678899999999877654 4456789999999999999999
Q ss_pred HHhhhCCCCCCccccccccCCCcccccceeecCcccc
Q 018703 232 NWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (351)
Q Consensus 232 ~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~ 268 (351)
+|...+ .+||+||..+.+|+++.+|.
T Consensus 211 ~Wl~~~-----------~tCPlCR~~~~~v~~~r~~~ 236 (238)
T PHA02929 211 IWKKEK-----------NTCPVCRTPFISVIKSRFFT 236 (238)
T ss_pred HHHhcC-----------CCCCCCCCEeeEEeeeeeee
Confidence 999754 38999999999999999874
No 5
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.07 E-value=5e-11 Score=115.94 Aligned_cols=54 Identities=35% Similarity=0.882 Sum_probs=49.6
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCCCccC-CCCCCCCCCCcCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~~~~~~~~~C~~fl-~G~C~~G~~C~y~H~~~ 56 (351)
+.++|+||+.|.|++|+.|.|+|+++..+.+.|.||. .|.|.+|..|.|.|..+
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCCh
Confidence 5789999999999999999999999667788888886 89999999999999987
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.04 E-value=9.5e-11 Score=81.50 Aligned_cols=44 Identities=39% Similarity=0.952 Sum_probs=34.8
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (351)
.+|+||++.+... .....|+ |+|+||.+||.+|.+.+ .+||+||
T Consensus 1 d~C~IC~~~~~~~-----~~~~~l~-C~H~fh~~Ci~~~~~~~-----------~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDG-----EKVVKLP-CGHVFHRSCIKEWLKRN-----------NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTT-----SCEEEET-TSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred CCCcCCChhhcCC-----CeEEEcc-CCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence 3699999987542 3456776 99999999999999875 4999998
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=6e-10 Score=77.09 Aligned_cols=42 Identities=38% Similarity=0.935 Sum_probs=30.0
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
|+||++ ++.+| ..| .|+|+||.+||.+|.+..+.. ...||+|
T Consensus 1 CpiC~~-~~~~P-------v~l-~CGH~FC~~Cl~~~~~~~~~~-------~~~CP~C 42 (42)
T PF15227_consen 1 CPICLD-LFKDP-------VSL-PCGHSFCRSCLERLWKEPSGS-------GFSCPEC 42 (42)
T ss_dssp ETTTTS-B-SSE-------EE--SSSSEEEHHHHHHHHCCSSSS-------T---SSS
T ss_pred CCccch-hhCCc-------ccc-CCcCHHHHHHHHHHHHccCCc-------CCCCcCC
Confidence 899999 57777 566 699999999999998765421 1589998
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.80 E-value=2.7e-09 Score=76.23 Aligned_cols=49 Identities=33% Similarity=0.777 Sum_probs=36.5
Q ss_pred cCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCccccccee
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (351)
++..|.||++...+ ..++ .|+|. ||..|+.+|.+.+ +.||+||.++..|
T Consensus 1 ~~~~C~iC~~~~~~--------~~~~-pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRD--------VVLL-PCGHLCFCEECAERLLKRK-----------KKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSS--------EEEE-TTCEEEEEHHHHHHHHHTT-----------SBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCc--------eEEe-CCCChHHHHHHhHHhcccC-----------CCCCcCChhhcCC
Confidence 46789999996321 2455 59999 9999999999843 5999999987643
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.77 E-value=5.2e-09 Score=94.65 Aligned_cols=69 Identities=28% Similarity=0.755 Sum_probs=47.5
Q ss_pred HHHhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCC-----CccccccccCCCcccccce-
Q 018703 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSG-----MDVNTALRACPICRKLSYF- 260 (351)
Q Consensus 187 ~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~-----~~~~~~~~~CP~CR~~~~~- 260 (351)
.+++..++.+|+||+|. +.+| ++..|+|.||..||.+|........ .+..+....||+||..+..
T Consensus 11 ~~~~~~~~~~CpICld~-~~dP--------VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQ-VRDP--------VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred eeccCCCccCCccCCCc-CCCc--------EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 35666788999999996 4554 5557999999999999986432110 0012234689999998863
Q ss_pred -eecC
Q 018703 261 -VIPS 264 (351)
Q Consensus 261 -vips 264 (351)
++|-
T Consensus 82 ~LvPi 86 (193)
T PLN03208 82 TLVPI 86 (193)
T ss_pred cEEEe
Confidence 5553
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.69 E-value=9.6e-09 Score=69.65 Aligned_cols=39 Identities=36% Similarity=1.122 Sum_probs=30.6
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
|+||++.+. +| .++..|+|+||.+||.+|.+.+ .+||+|
T Consensus 1 C~iC~~~~~-~~-------~~~~~CGH~fC~~C~~~~~~~~-----------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-DP-------VVVTPCGHSFCKECIEKYLEKN-----------PKCPVC 39 (39)
T ss_dssp ETTTTSB-S-SE-------EEECTTSEEEEHHHHHHHHHCT-----------SB-TTT
T ss_pred CCCCCCccc-Cc-------CEECCCCCchhHHHHHHHHHCc-----------CCCcCC
Confidence 899999644 34 4666899999999999999863 499998
No 11
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.64 E-value=1.2e-08 Score=93.53 Aligned_cols=54 Identities=30% Similarity=0.758 Sum_probs=33.2
Q ss_pred cccccccc-cccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcCCCCCCCCC
Q 018703 4 RVLCKFFA-HGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRS 59 (351)
Q Consensus 4 ~~~Cr~f~-~G~C~~G~~C~f~H~~~~~~~~~C~~fl~G~C~~G~~C~y~H~~~~~~ 59 (351)
.+.||||. +|.|-+|..|+|.|.... ..+|.-|+.|.|...+.|..+|...+..
T Consensus 206 avycryynangicgkgaacrfvheptr--kticpkflngrcnkaedcnlsheldprr 260 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPTR--KTICPKFLNGRCNKAEDCNLSHELDPRR 260 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccccc--cccChHHhcCccCchhcCCcccccCccc
Confidence 45577664 467777777777775433 4566666666666666666666655433
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.63 E-value=3e-08 Score=67.37 Aligned_cols=44 Identities=43% Similarity=1.111 Sum_probs=34.8
Q ss_pred cccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccc
Q 018703 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (351)
Q Consensus 196 ~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (351)
+|+||++.+ .++ .+++.|+|.||..|+..|..... ..||+||..
T Consensus 1 ~C~iC~~~~-~~~-------~~~~~C~H~~c~~C~~~~~~~~~----------~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-REP-------VVLLPCGHVFCRSCIDKWLKSGK----------NTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-hCc-------eEecCCCChhcHHHHHHHHHhCc----------CCCCCCCCc
Confidence 599999975 332 45557999999999999998621 489999975
No 13
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=98.61 E-value=3.7e-09 Score=99.98 Aligned_cols=58 Identities=26% Similarity=0.446 Sum_probs=44.4
Q ss_pred cCCCCCCcccCC--------CCCCCCCC-CceeeccCCCCCcchhccccccCCCCCeeeccccchhhhcccccc
Q 018703 285 LKSIDCKHFNFG--------NGNCPFGT-SCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRFTNLSQLTVT 349 (351)
Q Consensus 285 ~~~~~c~~f~~~--------~g~Cpfg~-~C~y~H~~~~g~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (351)
+..|.|+||-+. ++.||+|+ .|+|+|++|+|.+......++. -...|.|.||||.+|.
T Consensus 154 ~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~GyVLk~dkkk~e-------k~~eISlEe~IE~ER~ 220 (343)
T KOG1763|consen 154 TTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGYVLKRDKKKLE-------KQDEISLEELIEKERA 220 (343)
T ss_pred chhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcchhhhhhhhhhc-------ccccccHHHHHHHHHH
Confidence 345789999752 48999998 8999999999998774443333 2345999999998874
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.60 E-value=2.8e-08 Score=67.72 Aligned_cols=41 Identities=39% Similarity=1.141 Sum_probs=32.3
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
|+||++. ++++ .++..|+|.||..||++|.+... ...||+|
T Consensus 1 C~iC~~~-~~~~-------~~~~~C~H~fC~~C~~~~~~~~~---------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEP-FEDP-------VILLPCGHSFCRDCLRKWLENSG---------SVKCPLC 41 (41)
T ss_dssp ETTTSSB-CSSE-------EEETTTSEEEEHHHHHHHHHHTS---------SSBTTTT
T ss_pred CCcCCcc-ccCC-------CEEecCCCcchHHHHHHHHHhcC---------CccCCcC
Confidence 8999996 5544 34667999999999999998632 2579998
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.60 E-value=2.2e-08 Score=77.35 Aligned_cols=51 Identities=25% Similarity=0.747 Sum_probs=35.6
Q ss_pred cCccccccccccccCC-----cccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcc
Q 018703 193 QEIECSVCLDRVLSKP-----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~-----~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (351)
.+..|+||++.+.+.. +..+..+ .+..|+|.|...||.+|.+.+ .+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i-~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPI-VWGPCGHIFHFHCISQWLKQN-----------NTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-E-EEETTSEEEEHHHHHHHHTTS-----------SB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccce-EecccCCCEEHHHHHHHHhcC-----------CcCCCCC
Confidence 3456999999874321 0123343 445699999999999999765 4999998
No 16
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.59 E-value=1.9e-08 Score=90.48 Aligned_cols=102 Identities=26% Similarity=0.655 Sum_probs=64.9
Q ss_pred CccC-chhhcCCCCCCCCCcccCCCCCCcCCcccccCCChHHHHHHHHHHHHHHHHHHHHhcccC-----cccccccccc
Q 018703 131 RSIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQE-----IECSVCLDRV 204 (351)
Q Consensus 131 ~~~C-~~~~~G~C~~G~~C~~~Hg~~c~~c~~~~LhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~-----~~C~IC~e~i 204 (351)
..+| +|-++|+|.||+.|.|+|.-. +.=--|-| |.+ .. .++.++...+.+ ..|+||-+.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~-D~KtGWkL---n~E--------Wn--A~~Ee~~v~~~~~e~IPF~C~iCKkd- 205 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRS-DFKTGWKL---NQE--------WN--AEYEEAPVISGPGEKIPFLCGICKKD- 205 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhh-hhhccccc---chh--------hc--chhhhcccccCCCCCCceeehhchhh-
Confidence 3679 677999999999999999633 00000000 111 11 112222222222 479999997
Q ss_pred ccCCcccccceeecCCCCCcCcHHH-HHHHhhhCCCCCCccccccccCCCcccccceeecCcccccCc
Q 018703 205 LSKPTAAERKFGLLSECDHPFCISC-IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (351)
Q Consensus 205 ~~k~~~~~~~fgil~~C~H~FC~~C-I~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~~ 271 (351)
|+.| |..+|+|.||-.| |+++++.. .|-+|-+..+ ..+||...
T Consensus 206 y~sp--------vvt~CGH~FC~~Cai~~y~kg~------------~C~~Cgk~t~----G~f~V~~d 249 (259)
T COG5152 206 YESP--------VVTECGHSFCSLCAIRKYQKGD------------ECGVCGKATY----GRFWVVSD 249 (259)
T ss_pred ccch--------hhhhcchhHHHHHHHHHhccCC------------cceecchhhc----cceeHHhh
Confidence 5554 6778999999999 77777543 8999988764 46788654
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.3e-08 Score=91.16 Aligned_cols=57 Identities=30% Similarity=0.874 Sum_probs=46.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc--eeecC
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~vips 264 (351)
...+.+|.||||. .++| |++.|+|.||..||.+|...+.. .+.||+|+..+. .|||-
T Consensus 44 ~~~~FdCNICLd~-akdP--------VvTlCGHLFCWpClyqWl~~~~~--------~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDL-AKDP--------VVTLCGHLFCWPCLYQWLQTRPN--------SKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccc-cCCC--------EEeecccceehHHHHHHHhhcCC--------CeeCCccccccccceEEee
Confidence 4567899999996 4444 77889999999999999998753 368999998776 57875
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.9e-08 Score=92.50 Aligned_cols=50 Identities=38% Similarity=0.872 Sum_probs=39.8
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
....+-.|.||||. .+.| ... .|||+||..||..|-..++ .||+||..+.
T Consensus 235 i~~a~~kC~LCLe~-~~~p-------SaT-pCGHiFCWsCI~~w~~ek~-----------eCPlCR~~~~ 284 (293)
T KOG0317|consen 235 IPEATRKCSLCLEN-RSNP-------SAT-PCGHIFCWSCILEWCSEKA-----------ECPLCREKFQ 284 (293)
T ss_pred CCCCCCceEEEecC-CCCC-------CcC-cCcchHHHHHHHHHHcccc-----------CCCcccccCC
Confidence 34456889999997 4445 233 5999999999999999874 6999999874
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.47 E-value=1.2e-07 Score=74.95 Aligned_cols=60 Identities=23% Similarity=0.521 Sum_probs=41.2
Q ss_pred cCccccccccccccCC----cccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 193 QEIECSVCLDRVLSKP----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~----~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
+|..||||...+-.-- .|++.---++-.|+|.|.+.||.+|.++... ...||+||.+..|
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~--------~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS--------KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC--------CCCCCCcCCeeee
Confidence 4889999998643211 1122211244579999999999999986521 2499999998764
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.7e-08 Score=84.77 Aligned_cols=50 Identities=34% Similarity=0.800 Sum_probs=39.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+.-..|+|||+.+-+|- -+-.+|||+||..||+.-++.. ..||+||+.++
T Consensus 129 ~~~~~CPiCl~~~sek~-------~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV-------PVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhcc-------ccccccchhHHHHHHHHHHHhC-----------CCCCCcccccc
Confidence 34478999999876653 2557899999999999999765 59999997543
No 21
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.43 E-value=2.9e-07 Score=90.05 Aligned_cols=95 Identities=24% Similarity=0.592 Sum_probs=69.8
Q ss_pred cccccccc-ccCCCCCCCCCCCCC-CC----------------CCCCCCCccC-CCCCCC-CCCCcCCCCCCCCCCcccC
Q 018703 5 VLCKFFAH-GACLKGEHCEFSHDW-KD----------------PPNNICTYYQ-KGFCSY-GSRCRYEHVKPSRSESAAS 64 (351)
Q Consensus 5 ~~Cr~f~~-G~C~~G~~C~f~H~~-~~----------------~~~~~C~~fl-~G~C~~-G~~C~y~H~~~~~~~~~~~ 64 (351)
..|.+++. |.|..+..|++.|.. .. .++++|++|. .|.|+| |++|+|+|.......+...
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~ 166 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSE 166 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccc
Confidence 46887765 999999999999974 11 2356899998 799999 9999999987744322100
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCccCchh-hcCCCC
Q 018703 65 SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFA-AAGNCP 143 (351)
Q Consensus 65 ~~~~~~~s~~~t~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~C~~~-~~G~C~ 143 (351)
.........++.+|.+| ..|.|+
T Consensus 167 --------------------------------------------------------~~~~~~~~~kt~lC~~f~~tG~C~ 190 (332)
T KOG1677|consen 167 --------------------------------------------------------NQVGNPPKYKTKLCPKFQKTGLCK 190 (332)
T ss_pred --------------------------------------------------------hhhcCCCCCCCcCCCccccCCCCC
Confidence 00011235677899655 669999
Q ss_pred CCCCCcccCCCC
Q 018703 144 RGEKCPHIHGDT 155 (351)
Q Consensus 144 ~G~~C~~~Hg~~ 155 (351)
||..|+|+|+..
T Consensus 191 yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 191 YGSRCRFIHGEP 202 (332)
T ss_pred CCCcCeecCCCc
Confidence 999999999977
No 22
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.41 E-value=3.5e-07 Score=87.50 Aligned_cols=54 Identities=41% Similarity=0.928 Sum_probs=50.0
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCC--CCCCCcc-CCCCCCCCCCCcCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPP--NNICTYY-QKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~~~~~~--~~~C~~f-l~G~C~~G~~C~y~H~~~ 56 (351)
..++|++|+.|.|+.|..|.|+|..+-.. ...|++| +.|.|..|..|.|.|.+|
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp 159 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDP 159 (285)
T ss_pred CCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCc
Confidence 57899999999999999999999988766 7889999 799999999999999986
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=2.9e-07 Score=92.15 Aligned_cols=67 Identities=31% Similarity=0.668 Sum_probs=46.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~ 270 (351)
...+..|+||++. +..| ++..|+|+||..||+.|.... ..||+||..+... -+..
T Consensus 23 Le~~l~C~IC~d~-~~~P--------vitpCgH~FCs~CI~~~l~~~-----------~~CP~Cr~~~~~~-----~Lr~ 77 (397)
T TIGR00599 23 LDTSLRCHICKDF-FDVP--------VLTSCSHTFCSLCIRRCLSNQ-----------PKCPLCRAEDQES-----KLRS 77 (397)
T ss_pred cccccCCCcCchh-hhCc--------cCCCCCCchhHHHHHHHHhCC-----------CCCCCCCCccccc-----cCcc
Confidence 4457899999995 5555 345799999999999999653 3899999987531 0112
Q ss_pred chhHHHHHHHHH
Q 018703 271 PEEKQEIIDSYK 282 (351)
Q Consensus 271 ~~ek~~li~~yk 282 (351)
...-+.||+.|+
T Consensus 78 N~~L~~iVe~~~ 89 (397)
T TIGR00599 78 NWLVSEIVESFK 89 (397)
T ss_pred chHHHHHHHHHH
Confidence 222345666665
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.2e-07 Score=92.92 Aligned_cols=76 Identities=28% Similarity=0.666 Sum_probs=51.1
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH-HhhhCCCCCCccccccccCCCcccccce--eecCc
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSYF--VIPSV 265 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~ 265 (351)
+--+.+..|+|||+. | .++.+.+|||+||..||-+ |...+ .+.-+.||+||..++. +-|-
T Consensus 181 v~~~t~~~CPICL~~----~-----~~p~~t~CGHiFC~~CiLqy~~~s~-------~~~~~~CPiC~s~I~~kdl~pv- 243 (513)
T KOG2164|consen 181 VYGSTDMQCPICLEP----P-----SVPVRTNCGHIFCGPCILQYWNYSA-------IKGPCSCPICRSTITLKDLLPV- 243 (513)
T ss_pred hhcCcCCcCCcccCC----C-----CcccccccCceeeHHHHHHHHhhhc-------ccCCccCCchhhhccccceeee-
Confidence 333449999999996 1 3578889999999999877 55442 2335799999999986 5553
Q ss_pred ccccCchhHHHHHHHHHh
Q 018703 266 IWYYTPEEKQEIIDSYKS 283 (351)
Q Consensus 266 ~w~~~~~ek~~li~~yk~ 283 (351)
+|..+ .|++-++.+-.
T Consensus 244 ~~e~~--qkke~l~~~~~ 259 (513)
T KOG2164|consen 244 FIEDD--QKKEELKLHQD 259 (513)
T ss_pred eeccc--cccHHHHHHhc
Confidence 45443 22222555543
No 25
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.34 E-value=3.5e-07 Score=63.65 Aligned_cols=44 Identities=39% Similarity=1.016 Sum_probs=33.2
Q ss_pred cccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccc
Q 018703 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (351)
Q Consensus 196 ~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (351)
.|+||++.+ + .++++.++ +|+|+||.+||.++. .. ...||+||+
T Consensus 1 ~C~~C~~~~-~----~~~~~~l~-~CgH~~C~~C~~~~~-~~----------~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-S----EERRPRLT-SCGHIFCEKCLKKLK-GK----------SVKCPICRK 44 (44)
T ss_pred CCcCcCccc-c----CCCCeEEc-ccCCHHHHHHHHhhc-CC----------CCCCcCCCC
Confidence 499999975 2 13444555 699999999999999 22 158999985
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.2e-07 Score=86.04 Aligned_cols=56 Identities=29% Similarity=0.889 Sum_probs=45.7
Q ss_pred HHHhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 187 ~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
.+++.....+|.|||+.+. | ..++.+|| |+|.|...||.+|...-. ..||+||+..
T Consensus 316 ~~~ea~~GveCaICms~fi-K----~d~~~vlP-C~H~FH~~Cv~kW~~~y~----------~~CPvCrt~i 371 (374)
T COG5540 316 RAVEADKGVECAICMSNFI-K----NDRLRVLP-CDHRFHVGCVDKWLLGYS----------NKCPVCRTAI 371 (374)
T ss_pred hHHhcCCCceEEEEhhhhc-c----cceEEEec-cCceechhHHHHHHhhhc----------ccCCccCCCC
Confidence 3566777899999999875 4 24588997 999999999999998442 4899999874
No 27
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.1e-06 Score=85.87 Aligned_cols=58 Identities=26% Similarity=0.763 Sum_probs=44.1
Q ss_pred cccCccccccccccccCCc-----ccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPT-----AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~-----~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
.+.|..|.||||.+++.+. ..+.+---|| |+|+|.+.|++.|...+| +||+||.+.-|
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQ-----------TCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQ-----------TCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhcc-----------CCCcccCcccc
Confidence 6778999999999776431 0111113465 999999999999998876 99999999654
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.27 E-value=9.7e-07 Score=65.30 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=37.4
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+..|+||++. ++.| .++ .|+|+||.+||.+|...+ ..||+|+....
T Consensus 1 ~~~Cpi~~~~-~~~P-------v~~-~~G~v~~~~~i~~~~~~~-----------~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEV-MKDP-------VIL-PSGQTYERRAIEKWLLSH-----------GTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCc-CCCC-------EEC-CCCCEEeHHHHHHHHHHC-----------CCCCCCcCCCC
Confidence 4679999995 5556 455 699999999999999763 48999999874
No 29
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.25 E-value=2.1e-06 Score=82.77 Aligned_cols=54 Identities=31% Similarity=0.635 Sum_probs=45.5
Q ss_pred cccccccccccCCCCCC-CCCCCCCCC-----CCCCCCCccCCCCCCCCCCCcCCCCCCCC
Q 018703 4 RVLCKFFAHGACLKGEH-CEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (351)
Q Consensus 4 ~~~Cr~f~~G~C~~G~~-C~f~H~~~~-----~~~~~C~~fl~G~C~~G~~C~y~H~~~~~ 58 (351)
-.+||-|++|+|++|+. |+|.|.... -+...|..|++|.|. .++|+|.|.....
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCs-R~nCkylHpp~hl 96 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCS-RENCKYLHPPQHL 96 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccC-cccceecCCChhh
Confidence 36899999999999998 999997543 234469999999999 7889999998764
No 30
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.24 E-value=6e-07 Score=82.58 Aligned_cols=85 Identities=33% Similarity=0.768 Sum_probs=73.7
Q ss_pred CCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcCCCCCCCCCCcccCCCCCcCCCCCCCCCCCC
Q 018703 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGIT 81 (351)
Q Consensus 2 tk~~~Cr~f~~G~C~~G~~C~f~H~~~~~~~~~C~~fl~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~s~~~t~~~~~ 81 (351)
|+..+|..|++|.|.+.++|..+|.++.++.+.|+||+-|.|. +++|+|.|..-..
T Consensus 231 trkticpkflngrcnkaedcnlsheldprripacryfllgkcn-npncryvhihyse----------------------- 286 (377)
T KOG1492|consen 231 TRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCN-NPNCRYVHIHYSE----------------------- 286 (377)
T ss_pred cccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCC-CCCceEEEEeecC-----------------------
Confidence 3567899999999999999999999999999999999999998 7999999987511
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCccC-chhhcCCCCCCCCCcccCCCCCCc
Q 018703 82 KVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSIC-SFAAAGNCPRGEKCPHIHGDTCPT 158 (351)
Q Consensus 82 ~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~C-~~~~~G~C~~G~~C~~~Hg~~c~~ 158 (351)
..++| .|+.-|+|..|..|.-.|-..|..
T Consensus 287 ------------------------------------------------napicfefakygfcelgtscknqhilqctd 316 (377)
T KOG1492|consen 287 ------------------------------------------------NAPICFEFAKYGFCELGTSCKNQHILQCTD 316 (377)
T ss_pred ------------------------------------------------CCceeeeehhcceeccccccccceeeeecc
Confidence 01456 788999999999999999888763
No 31
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.20 E-value=1e-06 Score=86.20 Aligned_cols=57 Identities=42% Similarity=0.999 Sum_probs=48.6
Q ss_pred Cccccccccc-ccCCC-CCCCCCCCCCCC---------------CCCCCCCccCC-CCCCCCCCCcCCCCCCCCC
Q 018703 3 KRVLCKFFAH-GACLK-GEHCEFSHDWKD---------------PPNNICTYYQK-GFCSYGSRCRYEHVKPSRS 59 (351)
Q Consensus 3 k~~~Cr~f~~-G~C~~-G~~C~f~H~~~~---------------~~~~~C~~fl~-G~C~~G~~C~y~H~~~~~~ 59 (351)
|+.+|++|.. |.|++ |++|+|.|.... .++.+|.+|++ |.|.||.+|+|.|......
T Consensus 131 kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 131 KTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred cCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 7899998875 99999 999999997432 24678999995 9999999999999987544
No 32
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.5e-07 Score=87.39 Aligned_cols=54 Identities=30% Similarity=0.752 Sum_probs=42.5
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
.+|.||||. |++ +-+.++|| |+|.|...||..|..... +.||+|+..+.....+
T Consensus 230 ~~CaIClEd-Y~~----GdklRiLP-C~H~FH~~CIDpWL~~~r----------~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 230 DTCAICLED-YEK----GDKLRILP-CSHKFHVNCIDPWLTQTR----------TFCPVCKRDIRTDSGS 283 (348)
T ss_pred ceEEEeecc-ccc----CCeeeEec-CCCchhhccchhhHhhcC----------ccCCCCCCcCCCCCCC
Confidence 489999998 554 34678996 999999999999998652 4799999976544333
No 33
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.14 E-value=1.7e-06 Score=56.49 Aligned_cols=39 Identities=49% Similarity=1.200 Sum_probs=29.6
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
|+||++. ... ..++ .|+|.||..||..|.+.. ...||+|
T Consensus 1 C~iC~~~-~~~-------~~~~-~C~H~~c~~C~~~~~~~~----------~~~CP~C 39 (39)
T smart00184 1 CPICLEE-LKD-------PVVL-PCGHTFCRSCIRKWLKSG----------NNTCPIC 39 (39)
T ss_pred CCcCccC-CCC-------cEEe-cCCChHHHHHHHHHHHhC----------cCCCCCC
Confidence 7899996 222 2455 599999999999999722 1479987
No 34
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=98.06 E-value=5.1e-07 Score=83.31 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=40.9
Q ss_pred CCCCcccC----C----CCCCCCCC-CceeeccCCCCCcchhccccccCCCCCeeeccccchhhhcccccc
Q 018703 288 IDCKHFNF----G----NGNCPFGT-SCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRFTNLSQLTVT 349 (351)
Q Consensus 288 ~~c~~f~~----~----~g~Cpfg~-~C~y~H~~~~g~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (351)
+.|+||-+ | .+.||||+ .|.|+|.+|+|.+......+.. ..-.|.|++|||.+|.
T Consensus 142 ~VCkffieA~e~GkYgw~W~CPng~~~C~y~H~Lp~GyVLsrdk~Kd~-------tq~eislEefIE~eR~ 205 (299)
T COG5252 142 RVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPDGYVLSRDKIKDS-------TQVEISLEEFIELERQ 205 (299)
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCceeeeeeccCccceecccccccc-------ccccccHHHHHHHHhc
Confidence 45666653 2 37999996 6999999999998776654422 2234999999999874
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.03 E-value=2.1e-06 Score=83.10 Aligned_cols=45 Identities=33% Similarity=0.980 Sum_probs=37.4
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+.|+||.|. +.-| ++..|+|+||--|||+....+. .||.|++++.
T Consensus 24 LRC~IC~ey-f~ip--------~itpCsHtfCSlCIR~~L~~~p-----------~CP~C~~~~~ 68 (442)
T KOG0287|consen 24 LRCGICFEY-FNIP--------MITPCSHTFCSLCIRKFLSYKP-----------QCPTCCVTVT 68 (442)
T ss_pred HHHhHHHHH-hcCc--------eeccccchHHHHHHHHHhccCC-----------CCCceecccc
Confidence 679999994 5544 4445999999999999998773 8999999875
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.2e-06 Score=79.42 Aligned_cols=49 Identities=33% Similarity=0.889 Sum_probs=38.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH-HhhhCCCCCCccccccccCCCcccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..|..|.||||. .++| .-. .|+|+||+.||.. |-..+- .-||+||..++
T Consensus 213 ~~d~kC~lC~e~-~~~p-------s~t-~CgHlFC~~Cl~~~~t~~k~----------~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEE-PEVP-------SCT-PCGHLFCLSCLLISWTKKKY----------EFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecc-cCCc-------ccc-cccchhhHHHHHHHHHhhcc----------ccCchhhhhcc
Confidence 557889999996 5555 333 5999999999999 987652 36999999764
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.95 E-value=1.4e-05 Score=61.55 Aligned_cols=66 Identities=20% Similarity=0.413 Sum_probs=46.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCcccccC
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~~~ 270 (351)
++..|+|+.+ |+.+| .+++ ++|+|+..+|.+|..... .+||+++..... ++|+
T Consensus 3 ~~f~CpIt~~-lM~dP-------Vi~~-~G~tyer~~I~~~l~~~~----------~~~P~t~~~l~~~~l~pn------ 57 (73)
T PF04564_consen 3 DEFLCPITGE-LMRDP-------VILP-SGHTYERSAIERWLEQNG----------GTDPFTRQPLSESDLIPN------ 57 (73)
T ss_dssp GGGB-TTTSS-B-SSE-------EEET-TSEEEEHHHHHHHHCTTS----------SB-TTT-SB-SGGGSEE-------
T ss_pred cccCCcCcCc-HhhCc-------eeCC-cCCEEcHHHHHHHHHcCC----------CCCCCCCCcCCcccceEC------
Confidence 4678999999 57777 6775 779999999999998732 599999887653 4444
Q ss_pred chhHHHHHHHHHhh
Q 018703 271 PEEKQEIIDSYKSK 284 (351)
Q Consensus 271 ~~ek~~li~~yk~~ 284 (351)
..-+..|+.|.+.
T Consensus 58 -~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 58 -RALKSAIEEWCAE 70 (73)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 4566788888765
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.94 E-value=4.9e-06 Score=57.83 Aligned_cols=35 Identities=29% Similarity=0.769 Sum_probs=20.6
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhC
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~ 237 (351)
|+||.| +.+. +..-.+|+ |+|+||.+||.+|.+..
T Consensus 1 CpIc~e-~~~~----~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTE----ENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TT----SS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCC----CCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 4332 22226676 99999999999999865
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=1e-05 Score=78.31 Aligned_cols=54 Identities=22% Similarity=0.489 Sum_probs=39.8
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
.|..|+||....+-.| .-+|-|. .|+|.||.+||........ ..||.|+.++..
T Consensus 2 d~~~CP~Ck~~~y~np---~~kl~i~-~CGH~~C~sCv~~l~~~~~----------~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGS----------GSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCc---ccccccC-CCCCcccHHHHHHHhcCCC----------CCCCCCCCccch
Confidence 3568999999877655 3344444 6999999999999443221 389999998764
No 40
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.5e-06 Score=62.83 Aligned_cols=51 Identities=31% Similarity=0.725 Sum_probs=38.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCc-CcHHH-HHHHhhhCCCCCCccccccccCCCcccccceee
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISC-IRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~C-I~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vi 262 (351)
+-+.+|.||+|.-.+ .+|--|+|. .|++| |+.|+..+ ..||+||.+..-||
T Consensus 5 ~~~dECTICye~pvd---------sVlYtCGHMCmCy~Cg~rl~~~~~-----------g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 5 QWSDECTICYEHPVD---------SVLYTCGHMCMCYACGLRLKKALH-----------GCCPICRAPIKDVI 57 (62)
T ss_pred ccccceeeeccCcch---------HHHHHcchHHhHHHHHHHHHHccC-----------CcCcchhhHHHHHH
Confidence 345889999997544 356679996 69999 77888644 38999999875443
No 41
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.5e-06 Score=87.33 Aligned_cols=52 Identities=31% Similarity=0.671 Sum_probs=40.1
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (351)
....+..|.||+|.+..-+. ..--.|+ |+|+|+..|+++|...++ +||+||.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~---~~~~rL~-C~Hifh~~CL~~W~er~q-----------tCP~CR~ 338 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHN---ITPKRLP-CGHIFHDSCLRSWFERQQ-----------TCPTCRT 338 (543)
T ss_pred hhhcCCeeeeechhhccccc---cccceee-cccchHHHHHHHHHHHhC-----------cCCcchh
Confidence 44558899999998665311 1113564 999999999999999864 9999999
No 42
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.89 E-value=2.8e-06 Score=53.11 Aligned_cols=24 Identities=46% Similarity=1.144 Sum_probs=16.7
Q ss_pred Cccccccccc-ccCCCCCCCCCCCC
Q 018703 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 (351)
Q Consensus 3 k~~~Cr~f~~-G~C~~G~~C~f~H~ 26 (351)
|+.+|++|+. |.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 5778887776 88888888888886
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.84 E-value=4.6e-06 Score=62.45 Aligned_cols=45 Identities=40% Similarity=1.042 Sum_probs=23.0
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
+-+.|+||.+ ++..| ..|.+|.|+||..||+.-.. ..||+|+++.
T Consensus 6 ~lLrCs~C~~-~l~~p-------v~l~~CeH~fCs~Ci~~~~~-------------~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFD-ILKEP-------VCLGGCEHIFCSSCIRDCIG-------------SECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S---SS--------B---SSS--B-TTTGGGGTT-------------TB-SSS--B-
T ss_pred HhcCCcHHHH-HhcCC-------ceeccCccHHHHHHhHHhcC-------------CCCCCcCChH
Confidence 3478999999 57777 67889999999999966221 2599999875
No 44
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.80 E-value=2.4e-06 Score=81.12 Aligned_cols=56 Identities=39% Similarity=1.017 Sum_probs=45.5
Q ss_pred CcccccccccccCCCCCCCCCCCCCCC------------CCCC------------------------CCCccCC----C-
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHDWKD------------PPNN------------------------ICTYYQK----G- 41 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~~~~------------~~~~------------------------~C~~fl~----G- 41 (351)
|.++|-+|.+|+|.+|+.|.|+|++.. .+.. ||+||+. |
T Consensus 91 KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~k 170 (343)
T KOG1763|consen 91 KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGK 170 (343)
T ss_pred hHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC
Confidence 688999999999999999999998652 1122 8999973 2
Q ss_pred -----CCCCCC-CCcCCCCCCCC
Q 018703 42 -----FCSYGS-RCRYEHVKPSR 58 (351)
Q Consensus 42 -----~C~~G~-~C~y~H~~~~~ 58 (351)
.|++|. .|-|.|..|..
T Consensus 171 YGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 171 YGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred ccceeECCCCCCeeeeeecCCcc
Confidence 499965 89999999854
No 45
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.9e-05 Score=73.17 Aligned_cols=69 Identities=23% Similarity=0.573 Sum_probs=49.4
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~ 269 (351)
...++.+|+||++. +..| .+| .|+|+||..||..|.. . ...||.||. ... ++.
T Consensus 9 ~~~~~~~C~iC~~~-~~~p-------~~l-~C~H~~c~~C~~~~~~-~----------~~~Cp~cr~-~~~------~~~ 61 (386)
T KOG2177|consen 9 VLQEELTCPICLEY-FREP-------VLL-PCGHNFCRACLTRSWE-G----------PLSCPVCRP-PSR------NLR 61 (386)
T ss_pred hccccccChhhHHH-hhcC-------ccc-cccchHhHHHHHHhcC-C----------CcCCcccCC-chh------ccC
Confidence 44577999999996 5554 466 5999999999999887 1 159999994 211 333
Q ss_pred CchhHHHHHHHHHhhc
Q 018703 270 TPEEKQEIIDSYKSKL 285 (351)
Q Consensus 270 ~~~ek~~li~~yk~~~ 285 (351)
.......+++.++...
T Consensus 62 ~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 62 PNVLLANLVERLRQLR 77 (386)
T ss_pred ccHHHHHHHHHHHhcC
Confidence 4555667777776543
No 46
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.79 E-value=1.4e-05 Score=49.35 Aligned_cols=24 Identities=50% Similarity=1.131 Sum_probs=18.6
Q ss_pred CcccccccccccCCCCCCCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHD 26 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~ 26 (351)
|+.+|++|+.|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 556788777788888888888885
No 47
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=97.68 E-value=3e-05 Score=75.84 Aligned_cols=55 Identities=33% Similarity=0.821 Sum_probs=46.5
Q ss_pred CCccccccc-ccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 2 SKRVLCKFF-AHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 2 tk~~~Cr~f-~~G~C~~G~~C~f~H~~~~~~~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
+|...|.|| +.|-|..|.+|.|.|.-.......|.+|..|+|..|+.|++.|...
T Consensus 103 ~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~ 158 (325)
T KOG1040|consen 103 TKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERK 158 (325)
T ss_pred cccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcc
Confidence 455567765 5699999999999997644557899999999999999999999865
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.66 E-value=1.3e-05 Score=61.39 Aligned_cols=65 Identities=22% Similarity=0.464 Sum_probs=28.1
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+.+|+||++.+.+... .-...--.+.|+.+|.+.|+.+|.............+...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~-~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGE-IPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCC-cCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 5789999998662211 1112222358999999999999987543221112234568999999864
No 49
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.57 E-value=5.2e-05 Score=58.99 Aligned_cols=55 Identities=22% Similarity=0.564 Sum_probs=38.3
Q ss_pred ccccccccccccCC--------cccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee
Q 018703 195 IECSVCLDRVLSKP--------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (351)
Q Consensus 195 ~~C~IC~e~i~~k~--------~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (351)
..|+||-..|++-= +..+.. .+---|+|.|...||.+|.+++ ..||++|+++.+-
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~-v~wG~CnHaFH~HCI~rWL~Tk-----------~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECP-VVWGVCNHAFHDHCIYRWLDTK-----------GVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcce-EEEEecchHHHHHHHHHHHhhC-----------CCCCCCCceeEEe
Confidence 56888877665421 112222 2333499999999999999986 3899999997653
No 50
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.49 E-value=1.5e-05 Score=49.77 Aligned_cols=25 Identities=28% Similarity=1.107 Sum_probs=19.1
Q ss_pred CCCCCCccCC-CCCCCCCCCcCCCCC
Q 018703 31 PNNICTYYQK-GFCSYGSRCRYEHVK 55 (351)
Q Consensus 31 ~~~~C~~fl~-G~C~~G~~C~y~H~~ 55 (351)
++.+|++|++ |.|.+|++|+|+|..
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 4679999985 999999999999973
No 51
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=2.4e-05 Score=74.63 Aligned_cols=96 Identities=21% Similarity=0.540 Sum_probs=58.9
Q ss_pred ccC-chhhcCCCCCCCCCcccCCCCCCcCCcccccCCChHHHHHHHHHHHHHHHHHHHHhcccC---ccccccccccccC
Q 018703 132 SIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQE---IECSVCLDRVLSK 207 (351)
Q Consensus 132 ~~C-~~~~~G~C~~G~~C~~~Hg~~c~~c~~~~LhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~---~~C~IC~e~i~~k 207 (351)
.+| .|-++|+|.||++|.|+|.-.+=-=| |-|+- + ..+ ..+..-.+..-.+ ..|.||-+.+++
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~DyK~G-Wqi~~---e-~d~-------~ke~~~~~~~D~~~~Pf~c~icr~~f~~- 253 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSDYKAG-WQIEF---E-WDS-------AKEKKRVKIEDIELLPFKCFICRKYFYR- 253 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhhcccc-ceeeh---h-hhc-------cccccceecCCcccCCcccccccccccc-
Confidence 579 57799999999999999976632111 11111 1 100 0011111112122 349999998554
Q ss_pred CcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 208 PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 208 ~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
| |.++|+|.||-.|--+=.+.. ..|++|-...+
T Consensus 254 p--------Vvt~c~h~fc~~ca~~~~qk~-----------~~c~vC~~~t~ 286 (313)
T KOG1813|consen 254 P--------VVTKCGHYFCEVCALKPYQKG-----------EKCYVCSQQTH 286 (313)
T ss_pred c--------hhhcCCceeehhhhccccccC-----------Ccceecccccc
Confidence 3 677899999999954433322 38999988765
No 52
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.47 E-value=9.4e-05 Score=45.53 Aligned_cols=25 Identities=32% Similarity=1.254 Sum_probs=22.4
Q ss_pred CCCCCCccCCCCCCCCCCCcCCCCC
Q 018703 31 PNNICTYYQKGFCSYGSRCRYEHVK 55 (351)
Q Consensus 31 ~~~~C~~fl~G~C~~G~~C~y~H~~ 55 (351)
++.+|++|++|.|.+|++|+|+|..
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCcC
Confidence 4568999999999999999999963
No 53
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00022 Score=71.99 Aligned_cols=24 Identities=8% Similarity=-0.143 Sum_probs=20.9
Q ss_pred ccCchhhcCCCCCCCCCcccCCCC
Q 018703 132 SICSFAAAGNCPRGEKCPHIHGDT 155 (351)
Q Consensus 132 ~~C~~~~~G~C~~G~~C~~~Hg~~ 155 (351)
..|-++..|+|..+|-|.++|...
T Consensus 119 ~P~l~~~K~~e~~~D~~s~Lh~P~ 142 (667)
T KOG4791|consen 119 SPQLRSVKKVESSEDVPSPLHPPV 142 (667)
T ss_pred chHHHHhhhhhhhccccccCCCCc
Confidence 448899999999999999999764
No 54
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.24 E-value=0.00014 Score=69.31 Aligned_cols=52 Identities=31% Similarity=0.722 Sum_probs=40.9
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee-ecCcc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV-IPSVI 266 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v-ips~~ 266 (351)
+.|-||-+.| .- -++..|+|+||.-|||.....+. .||+||....++ .++..
T Consensus 26 lrC~IC~~~i-~i--------p~~TtCgHtFCslCIR~hL~~qp-----------~CP~Cr~~~~esrlr~~s 78 (391)
T COG5432 26 LRCRICDCRI-SI--------PCETTCGHTFCSLCIRRHLGTQP-----------FCPVCREDPCESRLRGSS 78 (391)
T ss_pred HHhhhhhhee-ec--------ceecccccchhHHHHHHHhcCCC-----------CCccccccHHhhhcccch
Confidence 5799999964 33 46778999999999999998763 799999998763 34443
No 55
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.15 E-value=0.00014 Score=70.45 Aligned_cols=25 Identities=28% Similarity=0.800 Sum_probs=22.6
Q ss_pred CCCCCccCCCCCCCCCC-CcCCCCCC
Q 018703 32 NNICTYYQKGFCSYGSR-CRYEHVKP 56 (351)
Q Consensus 32 ~~~C~~fl~G~C~~G~~-C~y~H~~~ 56 (351)
..|||-||+|.|+.|++ |+|.|...
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCC
Confidence 45899999999999999 99999865
No 56
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=8e-05 Score=72.70 Aligned_cols=48 Identities=38% Similarity=0.771 Sum_probs=37.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
.++.|.|||+. +.+. .....|.|-||.+||-+-..... +.||.||+..
T Consensus 42 ~~v~c~icl~l-lk~t-------mttkeClhrfc~~ci~~a~r~gn----------~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSL-LKKT-------MTTKECLHRFCFDCIWKALRSGN----------NECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHH-HHhh-------cccHHHHHHHHHHHHHHHHHhcC----------CCCchHHhhc
Confidence 46789999995 4443 45668999999999977665443 6999999875
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00022 Score=75.69 Aligned_cols=48 Identities=29% Similarity=0.749 Sum_probs=39.9
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
.-+.|+.|-+.--+ .+++.|+|+||..||++-...++ +.||.|-..|.
T Consensus 642 ~~LkCs~Cn~R~Kd---------~vI~kC~H~FC~~Cvq~r~etRq----------RKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD---------AVITKCGHVFCEECVQTRYETRQ----------RKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchhh---------HHHHhcchHHHHHHHHHHHHHhc----------CCCCCCCCCCC
Confidence 34789999975222 68889999999999999888876 79999999875
No 58
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.86 E-value=0.00036 Score=70.09 Aligned_cols=50 Identities=38% Similarity=0.882 Sum_probs=37.9
Q ss_pred cccCccccccccccccCCcccccceeec-CCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil-~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..+--+|+||||.+-+..+ ||| .-|+|+|--.|+.+|.. .+||+||-...
T Consensus 172 ~tELPTCpVCLERMD~s~~------gi~t~~c~Hsfh~~cl~~w~~-------------~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTT------GILTILCNHSFHCSCLMKWWD-------------SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCcccc------ceeeeecccccchHHHhhccc-------------CcChhhhhhcC
Confidence 3455789999998655432 332 24999999999999986 38999997654
No 59
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00058 Score=65.54 Aligned_cols=50 Identities=30% Similarity=0.636 Sum_probs=37.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+..+.+|.||+.+.. -| ..| .|+|.||+-||+.-.... .++||+||.++.
T Consensus 4 ~~~~~eC~IC~nt~n-~P-------v~l-~C~HkFCyiCiKGsy~nd----------k~~CavCR~pid 53 (324)
T KOG0824|consen 4 RTKKKECLICYNTGN-CP-------VNL-YCFHKFCYICIKGSYKND----------KKTCAVCRFPID 53 (324)
T ss_pred cccCCcceeeeccCC-cC-------ccc-cccchhhhhhhcchhhcC----------CCCCceecCCCC
Confidence 346788999999733 33 456 599999999998743322 158999999876
No 60
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00045 Score=69.77 Aligned_cols=51 Identities=35% Similarity=0.750 Sum_probs=42.3
Q ss_pred ccccccccccCCCCCCCCCCCCCCCC-CCCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 5 VLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 5 ~~Cr~f~~G~C~~G~~C~f~H~~~~~-~~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
..|.||+.-.|++++.|.|+|.-+.. ...+|.+|+.+.|- .+.|+|.|..-
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C-~k~C~YRHSe~ 55 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCC-RKVCRYRHSEI 55 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcCcchhhhhhhcCcc-cccccchhhHH
Confidence 35899999999999999999986653 35689999988765 35999999865
No 61
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.62 E-value=0.0029 Score=60.87 Aligned_cols=53 Identities=34% Similarity=0.875 Sum_probs=44.6
Q ss_pred cccccc-ccccCCC---CCCCCCC---CCCCC---------CCCCCCCccC-CCCCCCCCCCcCCCCCCC
Q 018703 5 VLCKFF-AHGACLK---GEHCEFS---HDWKD---------PPNNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (351)
Q Consensus 5 ~~Cr~f-~~G~C~~---G~~C~f~---H~~~~---------~~~~~C~~fl-~G~C~~G~~C~y~H~~~~ 57 (351)
.+|.-| ..|.|.. |+.|.|+ |.+.. .++..|.-|+ -|+|.||.+|.|+|....
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~ 300 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChh
Confidence 678766 4699999 9999999 98764 3567899888 699999999999999763
No 62
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.60 E-value=0.0038 Score=60.12 Aligned_cols=53 Identities=32% Similarity=0.757 Sum_probs=48.9
Q ss_pred ccccccc-ccccCCCCCCCCCCCCCCCCCCCCCCccC---CCCCCCCCCCcCCCCCC
Q 018703 4 RVLCKFF-AHGACLKGEHCEFSHDWKDPPNNICTYYQ---KGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 4 ~~~Cr~f-~~G~C~~G~~C~f~H~~~~~~~~~C~~fl---~G~C~~G~~C~y~H~~~ 56 (351)
...|++| +.|.|..|..|.|.|...+.....|.+|. .++|.+|..|++.|...
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~ 190 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLK 190 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCccccccccc
Confidence 5679999 89999999999999988777788999999 79999999999999976
No 63
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.56 E-value=0.00024 Score=65.91 Aligned_cols=55 Identities=35% Similarity=0.936 Sum_probs=44.8
Q ss_pred CcccccccccccCCCCCCCCCCCCCCC----------------------------CCCCCCCccCC----C------CCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHDWKD----------------------------PPNNICTYYQK----G------FCS 44 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~~~~----------------------------~~~~~C~~fl~----G------~C~ 44 (351)
|+++|-.|+.+.|.+|+.|.|+|+... ....+|+||+. | .|+
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CP 163 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCP 163 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCC
Confidence 688999999999999999999998431 01347999963 2 599
Q ss_pred CC-CCCcCCCCCCC
Q 018703 45 YG-SRCRYEHVKPS 57 (351)
Q Consensus 45 ~G-~~C~y~H~~~~ 57 (351)
+| .+|-|.|..|.
T Consensus 164 ng~~~C~y~H~Lp~ 177 (299)
T COG5252 164 NGNMRCSYIHKLPD 177 (299)
T ss_pred CCCceeeeeeccCc
Confidence 96 78999999985
No 64
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0006 Score=52.73 Aligned_cols=36 Identities=31% Similarity=0.803 Sum_probs=29.4
Q ss_pred ecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 217 LLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 217 il~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
++--|.|.|-.-||.+|...+... ..||+||+++.|
T Consensus 47 v~G~C~h~fh~hCI~~wl~~~tsq--------~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 47 VWGYCLHAFHAHCILKWLNTPTSQ--------GQCPMCRQTWQF 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc--------ccCCcchheeEe
Confidence 444699999999999999876432 489999998765
No 65
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0032 Score=62.80 Aligned_cols=54 Identities=30% Similarity=0.695 Sum_probs=44.1
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..+|+||++.+. ++.+++..+| -|+|.|=-+||++|.. + +.+..||.|.....+
T Consensus 4 g~tcpiclds~~---~~g~hr~vsl-~cghlFgs~cie~wl~-k--------~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYT---TAGNHRIVSL-QCGHLFGSQCIEKWLG-K--------KTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeee---ecCceEEeee-cccccccHHHHHHHHh-h--------hhhhhCcccCChhHH
Confidence 478999999854 4578998888 5999999999999995 3 235789999988764
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.42 E-value=0.0013 Score=63.99 Aligned_cols=57 Identities=28% Similarity=0.651 Sum_probs=44.9
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV 265 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~ 265 (351)
+...-.+|.+|-..+.+ + -.++.|-|+||.+||-+..... +.||+|.+...-..|..
T Consensus 11 ~~n~~itC~LC~GYliD-A-------TTI~eCLHTFCkSCivk~l~~~-----------~~CP~C~i~ih~t~pl~ 67 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLID-A-------TTITECLHTFCKSCIVKYLEES-----------KYCPTCDIVIHKTHPLL 67 (331)
T ss_pred hcccceehhhccceeec-c-------hhHHHHHHHHHHHHHHHHHHHh-----------ccCCccceeccCccccc
Confidence 34456899999997665 4 3566899999999999988753 69999999988766654
No 67
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.41 E-value=0.0013 Score=69.94 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=49.9
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCc-----cccc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV-----IWYY 269 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~-----~w~~ 269 (351)
..|+||+-...+.. -+.-..|.|.||-.||..|-... .+||+||+.|..|++.. -||.
T Consensus 124 ~~CP~Ci~s~~DqL------~~~~k~c~H~FC~~Ci~sWsR~a-----------qTCPiDR~EF~~v~V~eS~~~~~~vR 186 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQL------EESEKHTAHYFCEECVGSWSRCA-----------QTCPVDRGEFGEVKVLESTGIEANVR 186 (1134)
T ss_pred hhhhHHHHHHHHHh------hccccccccccHHHHhhhhhhhc-----------ccCchhhhhhheeeeeccccccceeE
Confidence 45999998654432 23334699999999999999765 49999999999888764 3443
Q ss_pred --CchhHHHHHHH
Q 018703 270 --TPEEKQEIIDS 280 (351)
Q Consensus 270 --~~~ek~~li~~ 280 (351)
..+|++.++++
T Consensus 187 ~lP~EEs~~~~e~ 199 (1134)
T KOG0825|consen 187 CLPSEESENILEK 199 (1134)
T ss_pred ecchhhhhhhhhh
Confidence 34666665554
No 68
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0018 Score=65.89 Aligned_cols=55 Identities=25% Similarity=0.760 Sum_probs=38.1
Q ss_pred cCccccccccccccCCcccc---------cceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAE---------RKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~---------~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
....|.|||..|--.-+.++ +-| +++.|.|+|...|+.+|++.-. ..||.||.+.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nY-m~tPC~HifH~~CL~~WMd~yk----------l~CPvCR~pL 633 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNY-MLTPCHHIFHRQCLLQWMDTYK----------LICPVCRCPL 633 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccc-cccchHHHHHHHHHHHHHhhhc----------ccCCccCCCC
Confidence 34679999987642211111 124 4456999999999999998431 3899999874
No 69
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0031 Score=63.58 Aligned_cols=75 Identities=24% Similarity=0.555 Sum_probs=50.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC-
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT- 270 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~- 270 (351)
..+.+|.||+..++ +| ..+ +|+|+||..||.+-.+.. .-||.||..+.- .+...-...
T Consensus 82 ~sef~c~vc~~~l~-~p-------v~t-pcghs~c~~Cl~r~ld~~-----------~~cp~Cr~~l~e-~~~~~~~~~~ 140 (398)
T KOG4159|consen 82 RSEFECCVCSRALY-PP-------VVT-PCGHSFCLECLDRSLDQE-----------TECPLCRDELVE-LPALEQALSL 140 (398)
T ss_pred cchhhhhhhHhhcC-CC-------ccc-cccccccHHHHHHHhccC-----------CCCccccccccc-chHHHHHHHH
Confidence 56789999999644 55 445 799999999988844321 489999998763 111111111
Q ss_pred chhHHHHHHHHHhhcCC
Q 018703 271 PEEKQEIIDSYKSKLKS 287 (351)
Q Consensus 271 ~~ek~~li~~yk~~~~~ 287 (351)
+-.+.++|.+|.+....
T Consensus 141 ~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 141 NRLLCKLITKFLEGSSS 157 (398)
T ss_pred HHHHHHHHHHhhhhhhc
Confidence 34555778877766655
No 70
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.25 E-value=0.0064 Score=62.55 Aligned_cols=54 Identities=24% Similarity=0.603 Sum_probs=45.3
Q ss_pred cccccccccccCCCCCCCCCCCCCCC-------CCCCCCCccCCCCCCCCCCCcCCCCCCCCCC
Q 018703 4 RVLCKFFAHGACLKGEHCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60 (351)
Q Consensus 4 ~~~Cr~f~~G~C~~G~~C~f~H~~~~-------~~~~~C~~fl~G~C~~G~~C~y~H~~~~~~~ 60 (351)
-++|.-|.+|.|++||+|.|+|..-. +++..|+.= |.|.. .-|.|+|.......
T Consensus 236 ~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~R-rvCfFAH~~eqLR~ 296 (528)
T KOG1595|consen 236 STPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG--GYCPR-RVCFFAHSPEQLRP 296 (528)
T ss_pred CccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC--CCCcc-ceEeeecChHHhcc
Confidence 57899999999999999999997543 578888875 89996 88999999876643
No 71
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.24 E-value=0.003 Score=68.54 Aligned_cols=62 Identities=27% Similarity=0.634 Sum_probs=44.9
Q ss_pred HHHhcccCccccccccccc--cCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee
Q 018703 187 EALRRSQEIECSVCLDRVL--SKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (351)
Q Consensus 187 ~~~~~s~~~~C~IC~e~i~--~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (351)
...+-+.-.+|+||..++- +..-|+.| -+-|.|.|.-.|+-+|..+... .+||+||..+.|+
T Consensus 1462 i~~~fsG~eECaICYsvL~~vdr~lPskr----C~TCknKFH~~CLyKWf~Ss~~---------s~CPlCRseitfv 1525 (1525)
T COG5219 1462 IDEKFSGHEECAICYSVLDMVDRSLPSKR----CATCKNKFHTRCLYKWFASSAR---------SNCPLCRSEITFV 1525 (1525)
T ss_pred hhhhcCCcchhhHHHHHHHHHhccCCccc----cchhhhhhhHHHHHHHHHhcCC---------CCCCccccccccC
Confidence 3466778899999998643 12112222 2359999999999999987752 5899999877664
No 72
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.09 E-value=0.0049 Score=63.38 Aligned_cols=51 Identities=27% Similarity=0.509 Sum_probs=39.5
Q ss_pred CcccccccccccCCCCCCCCCCC-CCCC---------CCCCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSH-DWKD---------PPNNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H-~~~~---------~~~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
|+..|. ++.|.-+-.|+|.| .-++ +....|.-|.+|.|..||.|-|+|...
T Consensus 200 Kir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvf 260 (528)
T KOG1595|consen 200 KIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVF 260 (528)
T ss_pred eecccC---CccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCcccccccee
Confidence 555553 23788889999999 3333 224589999999999999999999875
No 73
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0053 Score=60.36 Aligned_cols=47 Identities=32% Similarity=0.766 Sum_probs=37.7
Q ss_pred cCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...+|-|||....+ -.||| |.|. -|-+|-...|-.. +.||+||.++.
T Consensus 289 ~gkeCVIClse~rd--------t~vLP-CRHLCLCs~Ca~~Lr~q~-----------n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRD--------TVVLP-CRHLCLCSGCAKSLRYQT-----------NNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcc--------eEEec-chhhehhHhHHHHHHHhh-----------cCCCccccchH
Confidence 36899999997443 27886 9996 6999999999543 58999999875
No 74
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.85 E-value=0.0043 Score=62.60 Aligned_cols=50 Identities=28% Similarity=0.782 Sum_probs=40.5
Q ss_pred cccCccccccccccccCCcccccceeec-CCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil-~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..++..|+||+.+ +..| +. +.|+|.||..||.+|...++ .||.||.....
T Consensus 18 ~~~~l~C~~C~~v-l~~p--------~~~~~cgh~fC~~C~~~~~~~~~-----------~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSV-LRDP--------VQTTTCGHRFCAGCLLESLSNHQ-----------KCPVCRQELTQ 68 (391)
T ss_pred CcccccCcccccc-ccCC--------CCCCCCCCcccccccchhhccCc-----------CCcccccccch
Confidence 4567999999996 5555 44 48999999999999998743 89999888763
No 75
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0044 Score=61.42 Aligned_cols=52 Identities=33% Similarity=0.940 Sum_probs=39.4
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
...|.||.+- +| ..+-.|-+.-|+|+|...|+.+|...... .+.||+||...
T Consensus 4 ~A~C~Ic~d~---~p--~~~~l~~i~~cGhifh~~cl~qwfe~~Ps--------~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDG---RP--NDHELGPIGTCGHIFHTTCLTQWFEGDPS--------NRGCPICQIKL 55 (465)
T ss_pred cceeeEeccC---Cc--cccccccccchhhHHHHHHHHHHHccCCc--------cCCCCceeecc
Confidence 3579999553 33 35667888779999999999999976531 27999999544
No 76
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.81 E-value=0.0055 Score=35.15 Aligned_cols=18 Identities=50% Similarity=1.172 Sum_probs=11.1
Q ss_pred cccccccccCCCCCCCCCCC
Q 018703 6 LCKFFAHGACLKGEHCEFSH 25 (351)
Q Consensus 6 ~Cr~f~~G~C~~G~~C~f~H 25 (351)
+|+||.+ |+.|++|.|+|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 3665555 66666666666
No 77
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.60 E-value=0.013 Score=41.82 Aligned_cols=44 Identities=23% Similarity=0.625 Sum_probs=30.9
Q ss_pred cccccccccccCCcccccceeecCCCC-----CcCcHHHHHHHhhhCCCCCCccccccccCCCcc
Q 018703 196 ECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (351)
Q Consensus 196 ~C~IC~e~i~~k~~~~~~~fgil~~C~-----H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (351)
.|-||++. .+ + +.. -++ .|. |.+..+|+.+|...+.. .+||+|.
T Consensus 1 ~CrIC~~~-~~-~---~~~-l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~---------~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GD-E---GDP-LVS-PCRCKGSLKYVHQECLERWINESGN---------KTCEICK 49 (49)
T ss_pred CccCCCCC-CC-C---CCe-eEe-ccccCCchhHHHHHHHHHHHHHcCC---------CcCCCCC
Confidence 48899982 11 1 222 244 485 99999999999987642 4899995
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.57 E-value=0.039 Score=53.20 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=69.1
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccCchhH
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEK 274 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~~~ek 274 (351)
+.|+.|--. +..| .-.+.|+|.||-+||..-.-..+ ..||.|-..--. +-+ +..+.+|
T Consensus 275 LkCplc~~L-lrnp-------~kT~cC~~~fc~eci~~al~dsD----------f~CpnC~rkdvl-ld~---l~pD~dk 332 (427)
T COG5222 275 LKCPLCHCL-LRNP-------MKTPCCGHTFCDECIGTALLDSD----------FKCPNCSRKDVL-LDG---LTPDIDK 332 (427)
T ss_pred ccCcchhhh-hhCc-------ccCccccchHHHHHHhhhhhhcc----------ccCCCcccccch-hhc---cCccHHH
Confidence 799999985 4444 33468999999999998776654 589999764221 111 2334567
Q ss_pred HHHHHHHHhhcCCCCCCcccCCCCCCCCCCCceeeccCCCCCcchhccccccCCCCCeeeccccchhhh
Q 018703 275 QEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRFTNL 343 (351)
Q Consensus 275 ~~li~~yk~~~~~~~c~~f~~~~g~Cpfg~~C~y~H~~~~g~~~~~~~r~~~~~~~~~~~~~~~~l~~~ 343 (351)
++-|+.+.++-..+ .| .-.||...+...|+..+..|.+.+-+.-.+-.|
T Consensus 333 ~~EvE~~lkkq~~~--------~g------------ts~d~n~p~s~k~k~~dp~~sa~~~~~ta~pa~ 381 (427)
T COG5222 333 KLEVEKALKKQRKK--------VG------------TSDDNNTPMSEKRKREDPNSSAVFSKATAEPAF 381 (427)
T ss_pred HHHHHHHHHHHHHh--------cC------------CCCCCCCchhhhhhccCCCcchhhccccccchh
Confidence 77777765544332 11 114666666777888777777776665555444
No 79
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.34 E-value=0.0068 Score=60.42 Aligned_cols=26 Identities=46% Similarity=0.893 Sum_probs=22.5
Q ss_pred cccccccccccCCCCCCCCCCCCCCC
Q 018703 4 RVLCKFFAHGACLKGEHCEFSHDWKD 29 (351)
Q Consensus 4 ~~~Cr~f~~G~C~~G~~C~f~H~~~~ 29 (351)
..+|.||+.|.|++|++|+|+|.+..
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccchHhhccccccCcccccccCccc
Confidence 46899999999999999999998664
No 80
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.32 E-value=0.0077 Score=61.49 Aligned_cols=54 Identities=31% Similarity=0.792 Sum_probs=43.1
Q ss_pred cccccccccc---cCCCCCCCCCCCCCCCC---C----CCCCCccC-CCCCCCCCCCcCCCCCCC
Q 018703 4 RVLCKFFAHG---ACLKGEHCEFSHDWKDP---P----NNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (351)
Q Consensus 4 ~~~Cr~f~~G---~C~~G~~C~f~H~~~~~---~----~~~C~~fl-~G~C~~G~~C~y~H~~~~ 57 (351)
..+|.-..+| .|.+|++|+|.||.+.. + .+.|.+|. .|+|.+|-.|||+-.+..
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld 140 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLD 140 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhcccC
Confidence 5678877776 79999999999997641 1 35699998 799999999999755443
No 81
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.30 E-value=0.016 Score=57.72 Aligned_cols=51 Identities=29% Similarity=0.732 Sum_probs=41.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (351)
..++-|+.|-|.|-.|+. +.--|| |.|+|.++|+.+..... ..++||-||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e----~LqALp-CsHIfH~rCl~e~L~~n---------~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNE----RLQALP-CSHIFHLRCLQEILENN---------GTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcc----cccccc-hhHHHHHHHHHHHHHhC---------CCCCCccHHH
Confidence 346789999999988873 445675 99999999999998544 2489999994
No 82
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.18 E-value=0.013 Score=43.10 Aligned_cols=46 Identities=20% Similarity=0.518 Sum_probs=29.7
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI 253 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~ 253 (351)
...+..|+|.+.. +++| ..-..|+|+|-.+-|.+|.+.+. ...||+
T Consensus 8 ~~~~~~CPiT~~~-~~~P-------V~s~~C~H~fek~aI~~~i~~~~---------~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQP-FEDP-------VKSKKCGHTFEKEAILQYIQRNG---------SKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB--SSE-------EEESSS--EEEHHHHHHHCTTTS----------EE-SC
T ss_pred cEeccCCCCcCCh-hhCC-------cCcCCCCCeecHHHHHHHHHhcC---------CCCCCC
Confidence 4456899999995 6667 45558999999999999994332 368998
No 83
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.014 Score=47.80 Aligned_cols=29 Identities=31% Similarity=0.779 Sum_probs=25.3
Q ss_pred CCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 220 ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 220 ~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
.|+|.|.+-||.+|.++++ .||+|-+.-.
T Consensus 80 ~CNHaFH~hCisrWlktr~-----------vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-----------VCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-----------cCCCcCccee
Confidence 5999999999999999874 8999987643
No 84
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.85 E-value=0.027 Score=60.83 Aligned_cols=62 Identities=27% Similarity=0.674 Sum_probs=44.1
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
.....-.+|-||+|.|... ...|.-- +|-|+|.|.||++|..+.+..+ ..+-.||.|+..+.
T Consensus 186 ~l~~~~yeCmIC~e~I~~t----~~~WSC~-sCYhVFHl~CI~~WArs~ek~~----~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRT----APVWSCK-SCYHVFHLNCIKKWARSSEKTG----QDGWRCPACQSVSK 247 (950)
T ss_pred HHhcCceEEEEeeeecccc----CCceecc-hhhhhhhHHHHHHHHHHhhhcc----CccccCCcccchhc
Confidence 3445568999999987643 2344444 5999999999999998754322 23468999996554
No 85
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.0096 Score=56.58 Aligned_cols=67 Identities=25% Similarity=0.564 Sum_probs=44.7
Q ss_pred cccCccccccccccccCCcc---cccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce-eecCcc
Q 018703 191 RSQEIECSVCLDRVLSKPTA---AERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF-VIPSVI 266 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~---~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~-vips~~ 266 (351)
.-+|..|.||-..+...-.. -|..| .| +|+|+|...|||.|---.. .-+||-|+..+.. -.+|+-
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty-~L-sCnHvFHEfCIrGWcivGK---------kqtCPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTY-KL-SCNHVFHEFCIRGWCIVGK---------KQTCPYCKEKVDLKRMFSNP 289 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhhe-ee-ecccchHHHhhhhheeecC---------CCCCchHHHHhhHhhhccCc
Confidence 34567899998765542100 01222 24 4999999999999986432 1499999998874 556766
Q ss_pred cc
Q 018703 267 WY 268 (351)
Q Consensus 267 w~ 268 (351)
|-
T Consensus 290 We 291 (328)
T KOG1734|consen 290 WE 291 (328)
T ss_pred cc
Confidence 64
No 86
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=94.77 E-value=0.016 Score=57.85 Aligned_cols=25 Identities=28% Similarity=0.876 Sum_probs=22.9
Q ss_pred CCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 32 NNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 32 ~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
+.+|.||+.|.|+||.+|||+|...
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hccchHhhccccccCcccccccCcc
Confidence 4589999999999999999999865
No 87
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.64 E-value=0.026 Score=32.34 Aligned_cols=19 Identities=26% Similarity=0.873 Sum_probs=16.2
Q ss_pred CCCccCCCCCCCCCCCcCCCC
Q 018703 34 ICTYYQKGFCSYGSRCRYEHV 54 (351)
Q Consensus 34 ~C~~fl~G~C~~G~~C~y~H~ 54 (351)
.|+|+.. |.+|+.|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4888765 999999999994
No 88
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.037 Score=55.48 Aligned_cols=58 Identities=26% Similarity=0.650 Sum_probs=41.8
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
.-..|.||++.-. +...|-.|| |+|+||.+|.+.+....-.++. .+ ...||.+.-.+.
T Consensus 183 slf~C~ICf~e~~-----G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~-v~--~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 183 SLFDCCICFEEQM-----GQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQ-VS--CLKCPDPKCGSV 240 (445)
T ss_pred hcccceeeehhhc-----Ccceeeecc-cchHHHHHHHHHHHHHhhhcce-ee--eecCCCCCCccc
Confidence 3467999999633 346777886 9999999999999876544331 11 247998877654
No 89
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.03 Score=53.38 Aligned_cols=54 Identities=28% Similarity=0.587 Sum_probs=38.9
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...+.+.+|++|-+. |+ -.+.+. .|+|+||.-||++=+.... ..+||.|-....
T Consensus 234 s~~t~~~~C~~Cg~~----Pt---iP~~~~-~C~HiyCY~Ci~ts~~~~a---------sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEP----PT---IPHVIG-KCGHIYCYYCIATSRLWDA---------SFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCC----CC---CCeeec-cccceeehhhhhhhhcchh---------hcccCccCCCCc
Confidence 345678999999995 22 123444 5999999999998665332 259999988754
No 90
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.28 E-value=0.019 Score=57.19 Aligned_cols=47 Identities=30% Similarity=0.798 Sum_probs=36.4
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..|-||-|. +|. .-+..|+|..|-.|+..|..+... .+||.||-...
T Consensus 370 eLCKICaen--dKd-------vkIEPCGHLlCt~CLa~WQ~sd~g---------q~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAEN--DKD-------VKIEPCGHLLCTSCLAAWQDSDEG---------QTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhcc--CCC-------cccccccchHHHHHHHhhcccCCC---------CCCCceeeEec
Confidence 469999995 342 334469999999999999965532 48999998876
No 91
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.69 E-value=0.037 Score=62.64 Aligned_cols=66 Identities=21% Similarity=0.565 Sum_probs=44.3
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceee
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vi 262 (351)
.+..|..|-||+..-+.-+. +|--+|+|+|.+.|.|.-...+-. |....-.--+||+|..+.+-++
T Consensus 3482 kQD~DDmCmICFTE~L~AAP------~IqL~C~HiFHlqC~R~vLE~RW~-GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAP------AIQLDCSHIFHLQCCRRVLENRWL-GPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCc------ceecCCccchhHHHHHHHHHhccc-CCeeEEeeeecccccchhhhHH
Confidence 55568889999987665432 676689999999999874443321 1111112248999999988644
No 92
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.52 E-value=0.029 Score=57.84 Aligned_cols=55 Identities=29% Similarity=0.632 Sum_probs=41.1
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+...+.+|++|-|. .++ .|.+.|-|.||.-||.++...-.. ....+||.|-+...
T Consensus 532 enk~~~~C~lc~d~-aed--------~i~s~ChH~FCrlCi~eyv~~f~~------~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDP-AED--------YIESSCHHKFCRLCIKEYVESFME------NNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCCh-hhh--------hHhhhhhHHHHHHHHHHHHHhhhc------ccCCCCcccccccc
Confidence 34456899999995 443 477889999999999998865421 11269999988764
No 93
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.09 E-value=0.045 Score=47.10 Aligned_cols=48 Identities=23% Similarity=0.603 Sum_probs=31.3
Q ss_pred HHHHHHhcc-cCcccccccccccc-CCcccccceeecC-----CCCCcCcHHHHHHHhhhC
Q 018703 184 KHLEALRRS-QEIECSVCLDRVLS-KPTAAERKFGLLS-----ECDHPFCISCIRNWRSSS 237 (351)
Q Consensus 184 ~~~~~~~~s-~~~~C~IC~e~i~~-k~~~~~~~fgil~-----~C~H~FC~~CI~~W~~~~ 237 (351)
++++..+-. ...+|.||++.|.+ +- ...++ +=-|.||.+|+.+|+...
T Consensus 15 ~~lf~~~w~~~~~EC~IC~~~I~~~~G------vV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 15 ERLFNDQWPRCTVECQICFDRIDNNDG------VVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred HHHHHHHccccCeeehhhhhhhhcCCC------EEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 344444433 37999999999876 21 12222 224899999999996544
No 94
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.52 E-value=0.22 Score=47.45 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=50.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCcccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~ 268 (351)
......|+|....+-. ..+|..|-.|||+|+.++|++-. +. ..||+|-.++.- |||-.
T Consensus 110 ~~~~~~CPvt~~~~~~-----~~~fv~l~~cG~V~s~~alke~k--~~----------~~Cp~c~~~f~~~DiI~Ln--- 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNG-----KHKFVYLRPCGCVFSEKALKELK--KS----------KKCPVCGKPFTEEDIIPLN--- 169 (260)
T ss_pred CCceeECCCCCcccCC-----ceeEEEEcCCCCEeeHHHHHhhc--cc----------ccccccCCccccCCEEEec---
Confidence 3455789999987532 46899999999999999999985 21 379999999873 55432
Q ss_pred cCchhHHHHHHHH
Q 018703 269 YTPEEKQEIIDSY 281 (351)
Q Consensus 269 ~~~~ek~~li~~y 281 (351)
...+|.+.+.+..
T Consensus 170 p~~ee~~~l~~~~ 182 (260)
T PF04641_consen 170 PPEEELEKLRERM 182 (260)
T ss_pred CCccHHHHHHHHH
Confidence 2233555554444
No 95
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.91 E-value=0.16 Score=36.12 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=22.6
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
|++|+|.+-. .+..|.-= .|++..|+.|-..-+.... ..||-||.+.
T Consensus 1 cp~C~e~~d~----~d~~~~PC-~Cgf~IC~~C~~~i~~~~~----------g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE----TDKDFYPC-ECGFQICRFCYHDILENEG----------GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C----CCTT--SS-TTS----HHHHHHHTTSS-----------SB-TTT--B-
T ss_pred CCCccccccc----CCCccccC-cCCCcHHHHHHHHHHhccC----------CCCCCCCCCC
Confidence 7899998622 34454444 6999999999777665321 4999999875
No 96
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=0.1 Score=52.69 Aligned_cols=56 Identities=27% Similarity=0.567 Sum_probs=38.2
Q ss_pred Cccccccc-cccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 194 EIECSVCL-DRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 194 ~~~C~IC~-e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..+|+||+ +.+. .+.-|- ...|+|-||.+|.++-...+... .++-+||.=+=++.+
T Consensus 146 ~~~C~iC~~e~~~-----~~~~f~-~~~C~H~fC~~C~k~~iev~~~~-----~~~~~C~~~~C~~~l 202 (384)
T KOG1812|consen 146 KEECGICFVEDPE-----AEDMFS-VLKCGHRFCKDCVKQHIEVKLLS-----GTVIRCPHDGCESRL 202 (384)
T ss_pred cccCccCcccccc-----HhhhHH-HhcccchhhhHHhHHHhhhhhcc-----CCCccCCCCCCCccC
Confidence 57899999 5422 245555 45799999999999999877543 344578654444433
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.056 Score=52.40 Aligned_cols=35 Identities=29% Similarity=0.755 Sum_probs=26.9
Q ss_pred cceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 213 RKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 213 ~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..||-|-.|.|+|||+|.|.=- +|.||.|-..+..
T Consensus 101 ~IYGRmIPCkHvFCl~CAr~~~-------------dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 101 AIYGRMIPCKHVFCLECARSDS-------------DKICPLCDDRVQR 135 (389)
T ss_pred eeeecccccchhhhhhhhhcCc-------------cccCcCcccHHHH
Confidence 3578888899999999976422 3799999776653
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.03 E-value=0.26 Score=43.56 Aligned_cols=14 Identities=36% Similarity=0.562 Sum_probs=11.4
Q ss_pred ccccCCCcccccce
Q 018703 247 ALRACPICRKLSYF 260 (351)
Q Consensus 247 ~~~~CP~CR~~~~~ 260 (351)
+...||+||..+.-
T Consensus 79 ~~L~CPLCRG~V~G 92 (162)
T PF07800_consen 79 PELACPLCRGEVKG 92 (162)
T ss_pred ccccCccccCceec
Confidence 46789999998863
No 99
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=89.91 E-value=0.22 Score=29.96 Aligned_cols=19 Identities=32% Similarity=1.086 Sum_probs=8.6
Q ss_pred CCCccCCC-CCCCCCCCcCCC
Q 018703 34 ICTYYQKG-FCSYGSRCRYEH 53 (351)
Q Consensus 34 ~C~~fl~G-~C~~G~~C~y~H 53 (351)
+|.|-++| .|. .+.|.|+|
T Consensus 2 lC~yEl~Gg~Cn-d~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCN-DPDCEFQH 21 (23)
T ss_pred CCccccCCCeeC-CCCCCccc
Confidence 34444444 444 34455544
No 100
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=0.38 Score=41.42 Aligned_cols=64 Identities=20% Similarity=0.610 Sum_probs=37.8
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHh-hhCCCCCCccccccccCCCcccccceeecCcccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR-SSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~-~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~ 268 (351)
..|.+|+||...-+. .+|+|. |..|-.+.- .-.....+..+++.-.|-+||.....+..+.-|+
T Consensus 63 ~ddatC~IC~KTKFA------------DG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf 127 (169)
T KOG3799|consen 63 GDDATCGICHKTKFA------------DGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWF 127 (169)
T ss_pred CcCcchhhhhhcccc------------cccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHH
Confidence 568999999997443 367775 444422211 1111111223566678888888777776676665
No 101
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.95 E-value=0.28 Score=48.99 Aligned_cols=67 Identities=18% Similarity=0.474 Sum_probs=39.3
Q ss_pred hcccCccccccccccccCCcc-----------cccceeecCCCCC-----cCcHHHHHHHhhhCCCCCCccc--cccccC
Q 018703 190 RRSQEIECSVCLDRVLSKPTA-----------AERKFGLLSECDH-----PFCISCIRNWRSSSPTSGMDVN--TALRAC 251 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~-----------~~~~fgil~~C~H-----~FC~~CI~~W~~~~~~~~~~~~--~~~~~C 251 (351)
..++...|--||..- |+. .+.....++.|.. ..|++|+-+|..++|+..-... ...-.|
T Consensus 267 ~~~e~e~CigC~~~~---~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~C 343 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQ---PNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPC 343 (358)
T ss_pred CccccCCccccccCC---CCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCC
Confidence 456677888898741 111 0001112233444 4489999999999885321111 123489
Q ss_pred CCcccccc
Q 018703 252 PICRKLSY 259 (351)
Q Consensus 252 P~CR~~~~ 259 (351)
|+||++|-
T Consensus 344 PtCRa~FC 351 (358)
T PF10272_consen 344 PTCRAKFC 351 (358)
T ss_pred CCCcccce
Confidence 99999874
No 102
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.91 E-value=0.15 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=23.6
Q ss_pred ccccccccccCCCCCCCCCCCCCCC
Q 018703 5 VLCKFFAHGACLKGEHCEFSHDWKD 29 (351)
Q Consensus 5 ~~Cr~f~~G~C~~G~~C~f~H~~~~ 29 (351)
.+|+||..|.|+.|+.|+|+|++.+
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcccccccccceeeeeccCch
Confidence 7999999999999999999999874
No 103
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.43 E-value=0.18 Score=47.40 Aligned_cols=46 Identities=30% Similarity=0.873 Sum_probs=31.4
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
+-|.-|.-. | +...|-| ++|.|+||..|...=.. ..||+||+....
T Consensus 4 VhCn~C~~~----~--~~~~f~L-TaC~HvfC~~C~k~~~~-------------~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRF----P--SQDPFFL-TACRHVFCEPCLKASSP-------------DVCPLCKKSIRI 49 (233)
T ss_pred EEecccccc----C--CCCceee-eechhhhhhhhcccCCc-------------cccccccceeee
Confidence 457777663 2 2456645 47999999999753221 389999999653
No 104
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=88.41 E-value=0.27 Score=29.63 Aligned_cols=20 Identities=40% Similarity=0.938 Sum_probs=17.5
Q ss_pred ccccccccc-cCCCCCCCCCCC
Q 018703 5 VLCKFFAHG-ACLKGEHCEFSH 25 (351)
Q Consensus 5 ~~Cr~f~~G-~C~~G~~C~f~H 25 (351)
.+|.|.+.| .|. .++|.|.|
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QH 21 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQH 21 (23)
T ss_pred CCCccccCCCeeC-CCCCCccc
Confidence 479999998 998 48999999
No 105
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=88.15 E-value=0.44 Score=46.26 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=45.4
Q ss_pred Cccccccccc-ccCCCCCCCCCCCCCCC-----------CCCCCCCccC-CCCCCCCCCCcCCCCCCCCC
Q 018703 3 KRVLCKFFAH-GACLKGEHCEFSHDWKD-----------PPNNICTYYQ-KGFCSYGSRCRYEHVKPSRS 59 (351)
Q Consensus 3 k~~~Cr~f~~-G~C~~G~~C~f~H~~~~-----------~~~~~C~~fl-~G~C~~G~~C~y~H~~~~~~ 59 (351)
++.+|.-|.. |.|..|..|.|.|.-.. +....|+-++ .|.|.+|.+|.++|.+...+
T Consensus 273 rTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~ 342 (351)
T COG5063 273 RTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLD 342 (351)
T ss_pred ccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhh
Confidence 6788988864 99999999999996322 2245798887 68999999999999876443
No 106
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=88.05 E-value=0.19 Score=45.94 Aligned_cols=24 Identities=33% Similarity=1.172 Sum_probs=21.6
Q ss_pred CCCCccC-CCCCCCCCCCcCCCCCC
Q 018703 33 NICTYYQ-KGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 33 ~~C~~fl-~G~C~~G~~C~y~H~~~ 56 (351)
.+|+-|. +|+|-||+.|+|+|.+.
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhh
Confidence 4798886 99999999999999976
No 107
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=0.32 Score=48.14 Aligned_cols=53 Identities=23% Similarity=0.597 Sum_probs=41.4
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceee
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vi 262 (351)
..++|..|+||.-.-.. ++...|+|--|..||.+-.-.. +.|=.|.++...++
T Consensus 418 p~sEd~lCpICyA~pi~---------Avf~PC~H~SC~~CI~qHlmN~-----------k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPIN---------AVFAPCSHRSCYGCITQHLMNC-----------KRCFFCKTTVIDVI 470 (489)
T ss_pred CCcccccCcceecccch---------hhccCCCCchHHHHHHHHHhcC-----------CeeeEecceeeehh
Confidence 45899999999985322 5666799999999999987654 48999998876433
No 108
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.20 E-value=0.11 Score=50.09 Aligned_cols=43 Identities=33% Similarity=0.799 Sum_probs=30.1
Q ss_pred CccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
+..|.|||+...+ -.+| .|+|. -|.+|-.. ...||+||+.+..
T Consensus 300 ~~LC~ICmDaP~D--------CvfL-eCGHmVtCt~CGkr---------------m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD--------CVFL-ECGHMVTCTKCGKR---------------MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc--------eEEe-ecCcEEeehhhccc---------------cccCchHHHHHHH
Confidence 5779999997443 2455 59995 58887321 2489999986543
No 109
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=85.91 E-value=0.34 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.874 Sum_probs=20.1
Q ss_pred CCCCCccCCC---CCCCCCCCcCCCCCC
Q 018703 32 NNICTYYQKG---FCSYGSRCRYEHVKP 56 (351)
Q Consensus 32 ~~~C~~fl~G---~C~~G~~C~y~H~~~ 56 (351)
..+|.-...| .|.||++|+|.|...
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ 103 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIE 103 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHH
Confidence 3468777665 799999999999864
No 110
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.46 E-value=0.84 Score=43.92 Aligned_cols=52 Identities=27% Similarity=0.640 Sum_probs=39.0
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
-.+|.||-+.+-.. ..++.-.+|. |+|+||..|+.+-..... -.||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~--~~~~~p~~l~-c~h~~c~~c~~~l~~~~~----------i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSE--DGDHIPRVLK-CGHTICQNCASKLLGNSR----------ILCPFCRETT 54 (296)
T ss_pred CCceeecCcccccc--CcccCCcccc-cCceehHhHHHHHhcCce----------eeccCCCCcc
Confidence 35799999975433 3455556774 999999999998776542 3789999987
No 111
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.15 E-value=0.33 Score=48.04 Aligned_cols=50 Identities=32% Similarity=0.608 Sum_probs=35.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
.+....|.||++.-++ +..+| |+|+-| |+---..- .+||+||.....+++
T Consensus 302 ~~~p~lcVVcl~e~~~--------~~fvp-cGh~cc--ct~cs~~l------------~~CPvCR~rI~~~~k 351 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS--------AVFVP-CGHVCC--CTLCSKHL------------PQCPVCRQRIRLVRK 351 (355)
T ss_pred cCCCCceEEecCCccc--------eeeec-CCcEEE--chHHHhhC------------CCCchhHHHHHHHHH
Confidence 3445789999997443 35664 999977 88765532 479999998765443
No 112
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.96 E-value=0.97 Score=42.79 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=46.5
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc--eeecC
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~vips 264 (351)
...|+-..|+||-+.+.+- -+.++|..|+|+||++|..+..... ..||+|-.+.. -||+-
T Consensus 216 ~a~s~ryiCpvtrd~LtNt-----~~ca~Lr~sg~Vv~~ecvEklir~D-----------~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 216 IAASKRYICPVTRDTLTNT-----TPCAVLRPSGHVVTKECVEKLIRKD-----------MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred hhhccceecccchhhhcCc-----cceEEeccCCcEeeHHHHHHhcccc-----------ccccCCCCcCcccceEee
Confidence 3455778999999976543 3568999999999999999998643 48999988775 35553
No 113
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.23 E-value=0.52 Score=37.89 Aligned_cols=36 Identities=28% Similarity=0.594 Sum_probs=29.3
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHH
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIR 231 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~ 231 (351)
+.-+++..|+||-..|..+ .|.+.| |+|+|...|++
T Consensus 73 v~i~~~~~C~vC~k~l~~~------~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNS------VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCc------eEEEeC-CCeEEeccccc
Confidence 4456778899999988764 578886 88999999985
No 114
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.56 E-value=1.1 Score=44.27 Aligned_cols=55 Identities=22% Similarity=0.608 Sum_probs=40.2
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (351)
.+.+++..|-||-+.+. |.-+..|+|--|.-|--..|.-- ..+.||+||+.-.-|
T Consensus 56 dtDEen~~C~ICA~~~T---------Ys~~~PC~H~~CH~Ca~RlRALY---------~~K~C~~CrTE~e~V 110 (493)
T COG5236 56 DTDEENMNCQICAGSTT---------YSARYPCGHQICHACAVRLRALY---------MQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccceeEEecCCce---------EEEeccCCchHHHHHHHHHHHHH---------hccCCCccccccceE
Confidence 45667789999999754 34444599999999976655422 137999999987643
No 115
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=81.92 E-value=1.8 Score=38.40 Aligned_cols=61 Identities=18% Similarity=0.432 Sum_probs=41.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcC---cHHHHHHHhhhCCCCCCccccccccCCCccccccee---ecCc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPF---CISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV---IPSV 265 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~F---C~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v---ips~ 265 (351)
..+..|=||.+.- .+ +. -.=.|..+. ..+|+++|.+.+. ..+|++|..++.+. -|-.
T Consensus 6 ~~~~~CRIC~~~~--~~---~~---~PC~CkGs~k~VH~sCL~rWi~~s~---------~~~CeiC~~~Y~i~~~~kpl~ 68 (162)
T PHA02825 6 LMDKCCWICKDEY--DV---VT---NYCNCKNENKIVHKECLEEWINTSK---------NKSCKICNGPYNIKKNYKKCT 68 (162)
T ss_pred CCCCeeEecCCCC--CC---cc---CCcccCCCchHHHHHHHHHHHhcCC---------CCcccccCCeEEEEEecCCCc
Confidence 4567899999861 11 11 123466644 8899999998763 26899999999864 2445
Q ss_pred cccc
Q 018703 266 IWYY 269 (351)
Q Consensus 266 ~w~~ 269 (351)
.|.-
T Consensus 69 ~W~~ 72 (162)
T PHA02825 69 KWRC 72 (162)
T ss_pred cccc
Confidence 5643
No 116
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=81.56 E-value=0.7 Score=49.95 Aligned_cols=46 Identities=30% Similarity=0.857 Sum_probs=34.9
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..|.||++ .+. .++..|+|.||.+|+.+-...... ..||+||....
T Consensus 455 ~~c~ic~~--~~~--------~~it~c~h~~c~~c~~~~i~~~~~---------~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDS--------FFITRCGHDFCVECLKKSIQQSEN---------APCPLCRNVLK 500 (674)
T ss_pred cccccccc--ccc--------ceeecccchHHHHHHHhccccccC---------CCCcHHHHHHH
Confidence 89999999 443 355679999999999886544321 27999998764
No 117
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=80.34 E-value=0.49 Score=50.68 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=37.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
.++.+|+||++.+++. ++..|+|.||..|+..-...+.. -..||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~p---------~~~kc~~~~l~~~~n~~f~~~~~--------~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP---------SLLKCDHIFLKFCLNKLFESKKG--------PKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeecc---------chhhhhHHHHhhhhhceeeccCc--------cccchhhhhhh
Confidence 3578999999998874 56689999999998774433321 36899999544
No 118
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=79.23 E-value=0.94 Score=46.04 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=29.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHh
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (351)
++++.|+||.. +|+.| -||+ |+|..|.-|.+.-.
T Consensus 2 eeelkc~vc~~-f~~ep-------iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGS-FYREP-------IILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehh-hccCc-------eEee-cccHHHHHHHHhhc
Confidence 47889999999 78887 6776 99999999998754
No 119
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.57 E-value=1.4 Score=42.03 Aligned_cols=71 Identities=20% Similarity=0.408 Sum_probs=48.7
Q ss_pred cccCccccccccccccCCcccccceeecCCC-----CCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSEC-----DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV 265 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C-----~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~ 265 (351)
.+.|..|=||+.. -++ .++-.-...| .|--..+||..|.+.|+. + .....-+||+|++....+.|..
T Consensus 17 ~e~eR~CWiCF~T-deD----n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~--n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 17 QELERCCWICFAT-DED----NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-G--NPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred cccceeEEEEecc-Ccc----cchhhhcccccccCccHHHHHHHHHHHHhHHhc-C--CCCceeechhhcchheeecccc
Confidence 3456789999996 222 1222233346 366778999999999874 2 1223459999999999999987
Q ss_pred cccc
Q 018703 266 IWYY 269 (351)
Q Consensus 266 ~w~~ 269 (351)
-|+.
T Consensus 89 ~~~~ 92 (293)
T KOG3053|consen 89 GPFD 92 (293)
T ss_pred ChHH
Confidence 7654
No 120
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=78.38 E-value=1.8 Score=42.80 Aligned_cols=52 Identities=25% Similarity=0.586 Sum_probs=37.2
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+|..|+.|||.|. .+++-|--- .|+...|.-|-..-++.-. ..||-||....
T Consensus 13 eed~cplcie~md----itdknf~pc-~cgy~ic~fc~~~irq~ln----------grcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMD----ITDKNFFPC-PCGYQICQFCYNNIRQNLN----------GRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccc----cccCCcccC-CcccHHHHHHHHHHHhhcc----------CCChHhhhhcc
Confidence 3445999999753 245556444 4999999999777776432 48999998775
No 121
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=2.7 Score=43.14 Aligned_cols=60 Identities=18% Similarity=0.460 Sum_probs=39.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...+.+|+||++.... ..+..+|+|.||..|++.....+-..+.... +.-.-+-|+....
T Consensus 67 ~~~~~~c~ic~~~~~~--------~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~-i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--------EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK-IKCPAHGCPALVG 126 (444)
T ss_pred CCccccCCcccCCCcc--------hhhhcCCCcHHHHHHHHHHhhheeecccccc-ccCCCCCccccCC
Confidence 4566899999997421 2455579999999999999988765432111 2112334666554
No 122
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.82 E-value=1.4 Score=36.94 Aligned_cols=90 Identities=21% Similarity=0.383 Sum_probs=51.1
Q ss_pred CCCCCcCCcccccCCChHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccCCcc------cccceeecCCCCCcCc
Q 018703 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTA------AERKFGLLSECDHPFC 226 (351)
Q Consensus 153 g~~c~~c~~~~LhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~~~C~IC~e~i~~k~~~------~~~~fgil~~C~H~FC 226 (351)
+..|+.||+....+++-+ |+-|----...-+.....+......|--|+..+.+.+.. ..-+|. =+.|.+.||
T Consensus 15 P~~CpiCgLtLVss~HLA-RSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~-C~~C~~~FC 92 (112)
T TIGR00622 15 PVECPICGLTLILSTHLA-RSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYV-CAVCKNVFC 92 (112)
T ss_pred CCcCCcCCCEEeccchHH-HhhhccCCCcccccccccccCCCCcccCcCCCCCCccccccccccccccee-CCCCCCccc
Confidence 467889999876665554 444421111111111111222345699999976554310 112333 357999999
Q ss_pred HHHHHHHhhhCCCCCCccccccccCCCcc
Q 018703 227 ISCIRNWRSSSPTSGMDVNTALRACPICR 255 (351)
Q Consensus 227 ~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (351)
++|=.-|... ...||-|-
T Consensus 93 ~dCD~fiHe~-----------Lh~CPGC~ 110 (112)
T TIGR00622 93 VDCDVFVHES-----------LHCCPGCI 110 (112)
T ss_pred cccchhhhhh-----------ccCCcCCC
Confidence 9997666653 25899986
No 123
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=76.44 E-value=2.6 Score=40.65 Aligned_cols=97 Identities=27% Similarity=0.550 Sum_probs=61.5
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccc
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~ 268 (351)
++.+.+..|+||.|.++.- ...-+.| .|+|.--+.|.+.-.... .+||+|-+ .... +.+|-
T Consensus 153 ~e~~~~~ncPic~e~l~~s----~~~~~~~-~CgH~~h~~cf~e~~~~~-----------y~CP~C~~-~~d~--~~~~~ 213 (276)
T KOG1940|consen 153 VERSSEFNCPICKEYLFLS----FEDAGVL-KCGHYMHSRCFEEMICEG-----------YTCPICSK-PGDM--SHYFR 213 (276)
T ss_pred hhhcccCCCchhHHHhccc----cccCCcc-CcccchHHHHHHHHhccC-----------CCCCcccc-hHHH--HHHHH
Confidence 4556667799999988753 3444667 499999988888776543 59999998 3321 23332
Q ss_pred cCchhHHHHHHH------HHhhcCCCCCCcccCCCCCCCCCCCceeeccCCCC
Q 018703 269 YTPEEKQEIIDS------YKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDG 315 (351)
Q Consensus 269 ~~~~ek~~li~~------yk~~~~~~~c~~f~~~~g~Cpfg~~C~y~H~~~~g 315 (351)
. -+++|.. |+..+..+-|. .|.+|.+=.|--.+..+
T Consensus 214 --~--~d~~l~~~~~p~~y~~~~~~i~cn-------dC~~~~~~k~~~l~~kc 255 (276)
T KOG1940|consen 214 --K--LDKELAGSPMPEEYKNKTQDILCN-------DCGSGTNVKYHILYHKC 255 (276)
T ss_pred --H--HHHHHhcCCCCchhhchhheeecc-------CCCCCCccceehhhhhC
Confidence 1 2344444 88777767665 45555555554444433
No 124
>PHA02862 5L protein; Provisional
Probab=76.40 E-value=1.5 Score=38.26 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=32.7
Q ss_pred CccccccccccccCCcccccceeecCCC-----CCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSEC-----DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C-----~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
+..|=||.+.- + + . + ..| .---..+|+.+|.+.++ ...||+|+.++.+
T Consensus 2 ~diCWIC~~~~-~-e----~---~-~PC~C~GS~K~VHq~CL~~WIn~S~---------k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-D-E----R---N-NFCGCNEEYKVVHIKCMQLWINYSK---------KKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-C-C----C---c-ccccccCcchhHHHHHHHHHHhcCC---------CcCccCCCCeEEE
Confidence 46799999962 1 1 1 1 123 23445899999997654 3699999999874
No 125
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=76.33 E-value=1.6 Score=42.88 Aligned_cols=37 Identities=27% Similarity=0.598 Sum_probs=29.3
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhC
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~ 237 (351)
....|+||+..+.+ | .+|.-=+.+||..||-+.....
T Consensus 299 ~~~~CpvClk~r~N-p-------tvl~vSGyVfCY~Ci~~Yv~~~ 335 (357)
T KOG0826|consen 299 DREVCPVCLKKRQN-P-------TVLEVSGYVFCYPCIFSYVVNY 335 (357)
T ss_pred ccccChhHHhccCC-C-------ceEEecceEEeHHHHHHHHHhc
Confidence 44789999998665 3 3555569999999999999855
No 126
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=74.99 E-value=0.89 Score=32.71 Aligned_cols=27 Identities=37% Similarity=0.860 Sum_probs=18.8
Q ss_pred cCCCcccccceeecCcccccCchhHHHHHHHHHhhcCC
Q 018703 250 ACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKS 287 (351)
Q Consensus 250 ~CP~CR~~~~~vips~~w~~~~~ek~~li~~yk~~~~~ 287 (351)
.||+|..++ +.+.++.||+.|+..+..
T Consensus 22 ~CPlC~r~l-----------~~e~~~~li~~~~~~i~~ 48 (54)
T PF04423_consen 22 CCPLCGRPL-----------DEEHRQELIKKYKSEIEE 48 (54)
T ss_dssp E-TTT--EE------------HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCC-----------CHHHHHHHHHHHHHHHHh
Confidence 899999976 456779999999987654
No 127
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=73.15 E-value=1.5 Score=32.13 Aligned_cols=45 Identities=31% Similarity=0.617 Sum_probs=32.8
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
+..|-.|... -.+ +++..|+|.-|..|-.-|+. ..||.|-+++.+
T Consensus 7 ~~~~~~~~~~-~~~--------~~~~pCgH~I~~~~f~~~rY-------------ngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFV-GTK--------GTVLPCGHLICDNCFPGERY-------------NGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccc-ccc--------cccccccceeeccccChhhc-------------cCCCCCCCcccC
Confidence 4556666663 222 56667999999999877775 379999998764
No 128
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=73.13 E-value=3.2 Score=28.61 Aligned_cols=40 Identities=23% Similarity=0.678 Sum_probs=22.0
Q ss_pred ccccccccccCCcccccceeecC---CCCCcCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLS---ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~---~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
|.+|.|.|.. |++= +|+=.+...|+.++.+.... ..||.|
T Consensus 1 C~~C~~iv~~---------G~~C~~~~C~~r~H~~C~~~y~r~~~~---------~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---------GQRCSNRDCNVRLHDDCFKKYFRHRSN---------PKCPNC 43 (43)
T ss_dssp -TTT-SB-SS---------SEE-SS--S--EE-HHHHHHHTTT-SS----------B-TTT
T ss_pred CcccchhHee---------eccCCCCccCchHHHHHHHHHHhcCCC---------CCCcCC
Confidence 6788897654 5542 37778999999998876531 379987
No 129
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=73.00 E-value=2.5 Score=29.69 Aligned_cols=42 Identities=33% Similarity=0.751 Sum_probs=24.1
Q ss_pred ccccccccccCCcccccceeecCCCCC-----cCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDH-----PFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H-----~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
|=||++.-.+.+ .++..|.= .-..+|+++|...+. ..+|++|
T Consensus 1 CrIC~~~~~~~~-------~li~pC~C~Gs~~~vH~~CL~~W~~~~~---------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-------PLISPCRCKGSMKYVHRSCLERWIRESG---------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--------EE-SSS-SSCCGSEECCHHHHHHHHHT----------SB-TTT
T ss_pred CeEeCCcCCCCC-------ceecccccCCCcchhHHHHHHHHHHhcC---------CCcCCCC
Confidence 668998633321 23334542 346789999998753 2579887
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=72.27 E-value=4.1 Score=31.88 Aligned_cols=61 Identities=25% Similarity=0.419 Sum_probs=27.2
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
.....|-||-|.|--.. ....|..-..|+-.-|..|..-=++... ..||+|++.+...--+
T Consensus 7 ~~~qiCqiCGD~VGl~~--~Ge~FVAC~eC~fPvCr~CyEYErkeg~----------q~CpqCkt~ykr~kgs 67 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTE--NGEVFVACHECAFPVCRPCYEYERKEGN----------QVCPQCKTRYKRHKGS 67 (80)
T ss_dssp -SS-B-SSS--B--B-S--SSSB--S-SSS-----HHHHHHHHHTS-----------SB-TTT--B----TT-
T ss_pred cCCcccccccCccccCC--CCCEEEEEcccCCccchhHHHHHhhcCc----------ccccccCCCcccccCC
Confidence 34578999999987654 5678999999999999999876665432 5999999887754333
No 131
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=70.06 E-value=1.7 Score=41.07 Aligned_cols=57 Identities=30% Similarity=0.628 Sum_probs=45.4
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCC--Ccccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP--ICRKLSY 259 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP--~CR~~~~ 259 (351)
++.+|..|+||-...|-.| +-+|-|-|.|-|--|-+|...-.+..+ -.|| .|-+...
T Consensus 6 ~~~~d~~CPvCksDrYLnP---dik~linPECyHrmCESCvdRIFs~Gp----------AqCP~~gC~kILR 64 (314)
T COG5220 6 EEMEDRRCPVCKSDRYLNP---DIKILINPECYHRMCESCVDRIFSRGP----------AQCPYKGCGKILR 64 (314)
T ss_pred hhhhcccCCccccccccCC---CeEEEECHHHHHHHHHHHHHHHhcCCC----------CCCCCccHHHHHH
Confidence 3456778999999999877 457778888999999999999887654 3899 8866543
No 132
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.87 E-value=1.5 Score=42.60 Aligned_cols=24 Identities=38% Similarity=1.185 Sum_probs=21.7
Q ss_pred CCCCccC-CCCCCCCCCCcCCCCCC
Q 018703 33 NICTYYQ-KGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 33 ~~C~~fl-~G~C~~G~~C~y~H~~~ 56 (351)
.+|+-|. +|+|.||+.|+|.|.+.
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~ 211 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRS 211 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhh
Confidence 4798887 99999999999999976
No 133
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=68.20 E-value=1.9 Score=42.02 Aligned_cols=56 Identities=27% Similarity=0.637 Sum_probs=38.9
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHH------------------HhhhCCCCCCccccccccCCCc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN------------------WRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~------------------W~~~~~~~~~~~~~~~~~CP~C 254 (351)
....|.|||=-+.++| -|.+ ..|.|-|.+.|+.. |++... .+..-.||+|
T Consensus 114 p~gqCvICLygfa~~~-----~ft~-T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~------~~~eavcpVc 181 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSP-----AFTV-TACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMK------EQVEAVCPVC 181 (368)
T ss_pred CCCceEEEEEeecCCC-----ceee-ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHhhhhhHh
Confidence 4578999999887776 2444 46999999999754 554321 1122359999
Q ss_pred ccccce
Q 018703 255 RKLSYF 260 (351)
Q Consensus 255 R~~~~~ 260 (351)
|....+
T Consensus 182 re~i~~ 187 (368)
T KOG4445|consen 182 RERIKI 187 (368)
T ss_pred hhhccc
Confidence 988754
No 134
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=64.01 E-value=6.8 Score=38.32 Aligned_cols=67 Identities=25% Similarity=0.665 Sum_probs=44.0
Q ss_pred cCccccccccccccCCcccccceeecCCC--CCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSEC--DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C--~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~ 270 (351)
+-++|+||.+.| ..| |. -| +|.-|-+|-.+-. ..||.||.++..+ -
T Consensus 47 ~lleCPvC~~~l-~~P--------i~-QC~nGHlaCssC~~~~~--------------~~CP~Cr~~~g~~-R------- 94 (299)
T KOG3002|consen 47 DLLDCPVCFNPL-SPP--------IF-QCDNGHLACSSCRTKVS--------------NKCPTCRLPIGNI-R------- 94 (299)
T ss_pred hhccCchhhccC-ccc--------ce-ecCCCcEehhhhhhhhc--------------ccCCccccccccH-H-------
Confidence 347899999975 444 44 37 5999999976322 4899999987633 1
Q ss_pred chhHHHHHHHHHhhcCCCCCCcccCC
Q 018703 271 PEEKQEIIDSYKSKLKSIDCKHFNFG 296 (351)
Q Consensus 271 ~~ek~~li~~yk~~~~~~~c~~f~~~ 296 (351)
.-..+++|+.- -.+|||-..|
T Consensus 95 ~~amEkV~e~~-----~vpC~~~~~G 115 (299)
T KOG3002|consen 95 CRAMEKVAEAV-----LVPCKNAKLG 115 (299)
T ss_pred HHHHHHHHHhc-----eecccccccC
Confidence 12334444433 3788876655
No 135
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=63.94 E-value=2.5 Score=48.25 Aligned_cols=51 Identities=31% Similarity=0.777 Sum_probs=40.2
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
...+.-..|.||++.+-. +|.+..|+|.+|-.|+.-|...+ ..||+|....
T Consensus 1148 ~~~~~~~~c~ic~dil~~--------~~~I~~cgh~~c~~c~~~~l~~~-----------s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRN--------QGGIAGCGHEPCCRCDELWLYAS-----------SRCPICKSIK 1198 (1394)
T ss_pred HHhhcccchHHHHHHHHh--------cCCeeeechhHhhhHHHHHHHHh-----------ccCcchhhhh
Confidence 456677799999997543 34555799999999999999877 4899998543
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=63.29 E-value=3.4 Score=40.95 Aligned_cols=24 Identities=33% Similarity=1.017 Sum_probs=16.3
Q ss_pred ccccccccccCCCCCCCCCCCCCC
Q 018703 5 VLCKFFAHGACLKGEHCEFSHDWK 28 (351)
Q Consensus 5 ~~Cr~f~~G~C~~G~~C~f~H~~~ 28 (351)
.+|-+|..|.|++|++|.|.|+..
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred ccccceeeccccccccccccccCC
Confidence 467777777777777777777543
No 137
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.39 E-value=6.1 Score=35.76 Aligned_cols=65 Identities=20% Similarity=0.469 Sum_probs=39.8
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
-..||||+-.-++-.-+ +.. ---..|+-.|..-|+..|...-..+...-+-+-..||-|-.+...
T Consensus 165 ~~~cgicyayqldGTip-Dqt-CdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIP-DQT-CDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhcccceeeeecCCccc-ccc-ccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 36799998754432111 111 122369999999999999975432221122344589999988753
No 138
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.43 E-value=4.1 Score=44.92 Aligned_cols=37 Identities=27% Similarity=0.556 Sum_probs=30.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhh
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (351)
..+..|.||+-.++.+| |-+-+ |+|.|..+||.+=..
T Consensus 815 ep~d~C~~C~~~ll~~p------F~vf~-CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKP------FYVFP-CGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCc------ceeee-ccchHHHHHHHHHHH
Confidence 45688999999999876 66665 999999999877443
No 139
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.33 E-value=0.6 Score=41.48 Aligned_cols=60 Identities=25% Similarity=0.530 Sum_probs=37.2
Q ss_pred CCCCCcCCcccccCCChHHHHHHHHHHHHHHH--HHHHHhcccCccccccccccccCCcccccceeecCCCC
Q 018703 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQK--HLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECD 222 (351)
Q Consensus 153 g~~c~~c~~~~LhP~~~~~~~~h~~~c~~~~~--~~~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~ 222 (351)
|..|+.|.+.++.- |. +-|.-.|+.+-+ +.+.+.....-+|.||||.+..- ...+-|| |-
T Consensus 138 g~KCPvC~K~V~sD-d~---e~HlvMCLtkPrlsYNdDVL~ddkGECvICLEdL~~G-----dtIARLP-CL 199 (205)
T KOG0801|consen 138 GMKCPVCHKVVPSD-DA---EIHLVMCLTKPRLSYNDDVLKDDKGECVICLEDLEAG-----DTIARLP-CL 199 (205)
T ss_pred CccCCccccccCCC-cc---eEEEEEEecccccccccchhcccCCcEEEEhhhccCC-----Cceeccc-eE
Confidence 56788898876632 22 245555654443 33556666668999999986542 3456675 54
No 140
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=60.31 E-value=18 Score=38.74 Aligned_cols=25 Identities=32% Similarity=0.829 Sum_probs=15.1
Q ss_pred CccCchhhcCCCCCCCCCcccCCCCCCc
Q 018703 131 RSICSFAAAGNCPRGEKCPHIHGDTCPT 158 (351)
Q Consensus 131 ~~~C~~~~~G~C~~G~~C~~~Hg~~c~~ 158 (351)
..+|.|+ |+|.. -.|+|.|+..|..
T Consensus 625 ~~~CrY~--pnCrn-m~C~F~HPk~cRf 649 (681)
T KOG3702|consen 625 RGLCRYR--PNCRN-MQCKFYHPKTCRF 649 (681)
T ss_pred cccceec--cCcCC-ccccccCCccccc
Confidence 3556664 33443 4578888877654
No 141
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=59.20 E-value=9 Score=37.18 Aligned_cols=50 Identities=28% Similarity=0.626 Sum_probs=39.4
Q ss_pred cccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 196 ~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
.|++|-..+|-.|. -+..+..|+|.-|-+|...-....+ ..||.|-+...
T Consensus 2 ~Cp~CKt~~Y~np~----lk~~in~C~H~lCEsCvd~iF~~g~----------~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD----LKLMINECGHRLCESCVDRIFSLGP----------AQCPECMVILR 51 (300)
T ss_pred CCcccccceecCcc----ceeeeccccchHHHHHHHHHHhcCC----------CCCCcccchhh
Confidence 59999998887663 3345557999999999999887654 48999988654
No 142
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.25 E-value=5 Score=28.54 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=22.4
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (351)
+.|+|-...| +-| +-..+|.|.-|++ +..|...... +..-.||+|.++
T Consensus 3 L~CPls~~~i-~~P-------~Rg~~C~H~~CFD-l~~fl~~~~~------~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI-RIP-------VRGKNCKHLQCFD-LESFLESNQR------TPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB--SSE-------EEETT--SS--EE-HHHHHHHHHH------S---B-TTT---
T ss_pred eeCCCCCCEE-EeC-------ccCCcCcccceEC-HHHHHHHhhc------cCCeECcCCcCc
Confidence 5789998865 345 5556899998876 4555554321 112589999863
No 143
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=56.58 E-value=8 Score=38.15 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=48.0
Q ss_pred CCCCCcCCcccccCCChHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH
Q 018703 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232 (351)
Q Consensus 153 g~~c~~c~~~~LhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~ 232 (351)
+..|+.|++...... ...|+-|--...+............+.-|=.|.+....++ +|.-- .|.+.||++|=.=
T Consensus 290 P~eCpiC~ltLVss~-hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~-----~y~C~-~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 290 PIECPICSLTLVSSP-HLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSG-----RYRCE-SCKNVFCLDCDVF 362 (378)
T ss_pred CccCCccceeEecch-HHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCC-----cEEch-hccceeeccchHH
Confidence 567999998733222 2345555322222222222222223445999977655443 45444 6999999999544
Q ss_pred HhhhCCCCCCccccccccCCCcc
Q 018703 233 WRSSSPTSGMDVNTALRACPICR 255 (351)
Q Consensus 233 W~~~~~~~~~~~~~~~~~CP~CR 255 (351)
-..+- -.||-|-
T Consensus 363 iHesL-----------h~CpgCe 374 (378)
T KOG2807|consen 363 IHESL-----------HNCPGCE 374 (378)
T ss_pred HHhhh-----------hcCCCcC
Confidence 33321 3799886
No 144
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=56.01 E-value=3.8 Score=41.37 Aligned_cols=42 Identities=29% Similarity=0.767 Sum_probs=0.0
Q ss_pred ccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 212 ~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
.+.|..| +|+|++=+ ..|...+. .+...+.||+||+...+ +|
T Consensus 301 ~qP~VYl-~CGHVhG~---h~Wg~~~~-----~~~~~r~CPlCr~~g~~-V~ 342 (416)
T PF04710_consen 301 RQPWVYL-NCGHVHGY---HNWGQDSD-----RDPRSRTCPLCRQVGPY-VP 342 (416)
T ss_dssp ----------------------------------------------------
T ss_pred cCceeec-cccceeee---cccccccc-----cccccccCCCccccCCc-ee
Confidence 4567777 69998754 46765432 12236899999999987 44
No 145
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.16 E-value=6.6 Score=38.20 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=26.6
Q ss_pred CCCcCcHHHHHHHhhhCCCCCCccc---cccccCCCcccccc
Q 018703 221 CDHPFCISCIRNWRSSSPTSGMDVN---TALRACPICRKLSY 259 (351)
Q Consensus 221 C~H~FC~~CI~~W~~~~~~~~~~~~---~~~~~CP~CR~~~~ 259 (351)
|.-..|.+|+-+|.-..|+. .+.. ...-+||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~-v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDN-VYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccc-hhHHHHHhcCCCCcchhhceE
Confidence 56777899999999887742 1100 12358999999874
No 146
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=52.17 E-value=9.5 Score=41.74 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=36.0
Q ss_pred CccccccccccccCCcccccceee--cCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGL--LSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgi--l~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..+|.||.-..-. + .-.|++ +.+|.|.||..||.+|++.-. ..++.-.|+.|..-+.
T Consensus 96 s~Ss~~C~~E~S~-~---~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~-----~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSP-D---VDSSNICPVQTHVENQCPNCLKSCNDQLE-----ESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCC-c---ccccCcCchhhhhhhhhhHHHHHHHHHhh-----ccccccccccHHHHhh
Confidence 3456666544221 2 123455 458999999999999998543 2234457888876654
No 147
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.81 E-value=39 Score=31.84 Aligned_cols=60 Identities=23% Similarity=0.480 Sum_probs=39.9
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+..-+-.|..|-..+.+..+ .-| .|-|.|..+|+.+|...-... ..-.-..||-|-+++.
T Consensus 46 DsDY~pNC~LC~t~La~gdt------~RL-vCyhlfHW~ClneraA~lPan---TAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDT------TRL-VCYHLFHWKCLNERAANLPAN---TAPAGYQCPCCSQEIF 105 (299)
T ss_pred hcCCCCCCceeCCccccCcc------eee-hhhhhHHHHHhhHHHhhCCCc---CCCCcccCCCCCCccC
Confidence 33445779999887655432 234 699999999999998653210 1112358999998753
No 148
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=49.57 E-value=8.3 Score=38.32 Aligned_cols=25 Identities=44% Similarity=1.112 Sum_probs=23.4
Q ss_pred CCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 32 NNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 32 ~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
..+|.||..|.|..|+.|.|.|.+|
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred CccccceeeccccccccccccccCC
Confidence 3489999999999999999999999
No 149
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=47.89 E-value=29 Score=30.04 Aligned_cols=56 Identities=23% Similarity=0.621 Sum_probs=39.0
Q ss_pred HhcccCccccccccccccCCcccccceee-cCCCCCcCcHHHHHH-HhhhCCCCCCccccccccCCCcccccc
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGL-LSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgi-l~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+....-.+|.||-|.-. |.+|-- -.-|+..-|--|--+ |.-.+. -..||.|++.+.
T Consensus 75 F~d~~lYeCnIC~etS~------ee~FLKPneCCgY~iCn~Cya~LWK~~~~---------ypvCPvCkTSFK 132 (140)
T PF05290_consen 75 FLDPKLYECNICKETSA------EERFLKPNECCGYSICNACYANLWKFCNL---------YPVCPVCKTSFK 132 (140)
T ss_pred ecCCCceeccCcccccc------hhhcCCcccccchHHHHHHHHHHHHHccc---------CCCCCccccccc
Confidence 34457789999999633 334422 235999999999655 765542 358999999875
No 150
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.53 E-value=12 Score=23.13 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=6.3
Q ss_pred ccccccccccc
Q 018703 196 ECSVCLDRVLS 206 (351)
Q Consensus 196 ~C~IC~e~i~~ 206 (351)
+|+-|-..|..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 46666665543
No 151
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=45.03 E-value=9.5 Score=36.37 Aligned_cols=22 Identities=32% Similarity=0.889 Sum_probs=11.9
Q ss_pred cccccccccccCCCCCCCCCCC
Q 018703 4 RVLCKFFAHGACLKGEHCEFSH 25 (351)
Q Consensus 4 ~~~Cr~f~~G~C~~G~~C~f~H 25 (351)
..+|+.|..+.|.+|..|.|.|
T Consensus 152 ea~C~~~e~~~C~rG~~CnFmH 173 (260)
T KOG2202|consen 152 EAICGQFERTECSRGGACNFMH 173 (260)
T ss_pred hhhhcccccccCCCCCcCcchh
Confidence 3445555555555555555555
No 152
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=36.70 E-value=15 Score=26.21 Aligned_cols=32 Identities=41% Similarity=0.823 Sum_probs=22.0
Q ss_pred eecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 216 GLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 216 gil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
|++.-=+|-.|+.|+..-.+.+ ..||+|..+.
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s-----------~~C~iC~~~L 45 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRS-----------DRCPICGKPL 45 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSS-----------SEETTTTEE-
T ss_pred CeeeecchhHHHHHHHHHhccc-----------cCCCcccCcC
Confidence 5664336999999999988765 3899998764
No 153
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=36.19 E-value=35 Score=36.75 Aligned_cols=52 Identities=29% Similarity=0.678 Sum_probs=30.1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCC---C------------CCCCCccCCCCCCCCCCCcCCCCCCCCCCcc
Q 018703 5 VLCKFFAHGACLKGEHCEFSHDWKDP---P------------NNICTYYQKGFCSYGSRCRYEHVKPSRSESA 62 (351)
Q Consensus 5 ~~Cr~f~~G~C~~G~~C~f~H~~~~~---~------------~~~C~~fl~G~C~~G~~C~y~H~~~~~~~~~ 62 (351)
.-|+|=.+ |.. .+|.|+|..... + ...|+|+ |.|. ...|+|.|.+.-.....
T Consensus 586 p~Ck~~~k--Cta-sDC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~--pnCr-nm~C~F~HPk~cRf~~~ 652 (681)
T KOG3702|consen 586 PGCKFGKK--CTA-SDCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYR--PNCR-NMQCKFYHPKTCRFNTN 652 (681)
T ss_pred cccccccc--ccc-ccCcccccCCCCCCccccCCCCCCCCCccccceec--cCcC-CccccccCCcccccccc
Confidence 34555544 555 678888864431 1 2246664 5565 56788888877544333
No 154
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=24 Score=34.82 Aligned_cols=40 Identities=23% Similarity=0.555 Sum_probs=25.2
Q ss_pred cCcccc--ccccccccCCcccccceeecCCCCCcCcHHHHHHHh
Q 018703 193 QEIECS--VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (351)
Q Consensus 193 ~~~~C~--IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (351)
..+.|+ -|---++-. |..++----.+|+-+||.+|...+.
T Consensus 314 gGVlCP~pgCG~gll~E--PD~rkvtC~~gCgf~FCR~C~e~yh 355 (446)
T KOG0006|consen 314 GGVLCPRPGCGAGLLPE--PDQRKVTCEGGCGFAFCRECKEAYH 355 (446)
T ss_pred CCEecCCCCCCcccccC--CCCCcccCCCCchhHhHHHHHhhhc
Confidence 355554 354444433 3566655555699999999998543
No 155
>PLN02189 cellulose synthase
Probab=34.79 E-value=39 Score=38.42 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=46.8
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~ 269 (351)
.....|.||-|.|--+ ..+..|..-..|+-.-|..|-.-=|+.. ..+||+|++.....-.|. ||.
T Consensus 32 ~~~~~C~iCgd~vg~~--~~g~~fvaC~~C~fpvCr~Cyeyer~eg----------~q~CpqCkt~Y~r~kgs~-~v~ 96 (1040)
T PLN02189 32 LDGQVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYERREG----------TQNCPQCKTRYKRLKGSP-RVE 96 (1040)
T ss_pred ccCccccccccccCcC--CCCCEEEeeccCCCccccchhhhhhhcC----------CccCcccCCchhhccCCC-CcC
Confidence 3456899999997654 3567888887899999999985444332 259999999998654443 344
No 156
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=34.62 E-value=10 Score=41.72 Aligned_cols=34 Identities=21% Similarity=0.621 Sum_probs=25.2
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHh
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (351)
...|-.|.-.++.- .-+=+-|++.+|+.|++.|.
T Consensus 229 ~~mC~~C~~tlfn~-------hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLFNI-------HWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcccccce-------eEEccccCCeeeecchhhcc
Confidence 45688887765431 24556799999999999993
No 157
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.45 E-value=21 Score=29.43 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=24.0
Q ss_pred CCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 222 DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 222 ~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
.=.||..||..+......+.+ ....-.||.||..=
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~--~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVL--EDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHh--cCCceECCCCCCee
Confidence 778999999999876432211 12235899999843
No 158
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=32.84 E-value=26 Score=26.66 Aligned_cols=14 Identities=29% Similarity=1.042 Sum_probs=10.3
Q ss_pred cCcHHHHHHHhhhC
Q 018703 224 PFCISCIRNWRSSS 237 (351)
Q Consensus 224 ~FC~~CI~~W~~~~ 237 (351)
-||..|+.+|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999864
No 159
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=31.90 E-value=24 Score=25.45 Aligned_cols=13 Identities=38% Similarity=1.099 Sum_probs=7.6
Q ss_pred cCCCCCcCcHHHH
Q 018703 218 LSECDHPFCISCI 230 (351)
Q Consensus 218 l~~C~H~FC~~CI 230 (351)
=+.|.+.||++|=
T Consensus 24 C~~C~~~FC~dCD 36 (51)
T PF07975_consen 24 CPKCKNHFCIDCD 36 (51)
T ss_dssp -TTTT--B-HHHH
T ss_pred CCCCCCccccCcC
Confidence 3579999999993
No 160
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=31.57 E-value=32 Score=24.52 Aligned_cols=40 Identities=20% Similarity=0.503 Sum_probs=26.0
Q ss_pred cccc--ccccccccCCcccccceeecCCCCCcCcHHHHHHHhh
Q 018703 195 IECS--VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (351)
Q Consensus 195 ~~C~--IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (351)
.-|+ =|.-.|..... .......-+.|+|.||+.|-..|..
T Consensus 19 ~~CP~~~C~~~~~~~~~-~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 19 KWCPAPDCSAAIIVTEE-EGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred cCCCCCCCcceEEecCC-CCCCeeECCCCCCeECCCCCCcCCC
Confidence 4588 78665443211 1233455668999999999999853
No 161
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.54 E-value=23 Score=32.72 Aligned_cols=40 Identities=43% Similarity=0.833 Sum_probs=27.1
Q ss_pred ccccccccccCCcccccceeecCCCCC-cCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDH-PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H-~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
|-+|-+. +.. .+|-.|+| ++|-.|=.. .+.||+|+.+..-
T Consensus 161 Cr~C~~~--------~~~-VlllPCrHl~lC~~C~~~---------------~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER--------EAT-VLLLPCRHLCLCGICDES---------------LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC--------Cce-EEeecccceEeccccccc---------------CccCCCCcChhhc
Confidence 8888885 223 44445998 578777443 2589999987653
No 162
>PLN02195 cellulose synthase A
Probab=30.29 E-value=57 Score=36.91 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=43.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
|....|-||-|.|--+ ..+..|..-..|+-.-|..|-.==|+.. ...||+|.+...
T Consensus 4 ~~~~~c~~cgd~~~~~--~~g~~fvaC~eC~~pvCrpCyeyer~eg----------~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVD--SNGEAFVACHECSYPLCKACLEYEIKEG----------RKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcC--CCCCeEEEeccCCCccccchhhhhhhcC----------CccCCccCCccc
Confidence 4456899999987654 3466888888899999999995444332 259999999987
No 163
>PLN02436 cellulose synthase A
Probab=30.29 E-value=51 Score=37.66 Aligned_cols=62 Identities=24% Similarity=0.478 Sum_probs=45.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
......|-||-|.|--. ..+..|.-=..|+-.-|..|-.-=|+.. ..+||+|++.....-.|
T Consensus 33 ~~~~~iCqICGD~Vg~t--~dGe~FVACn~C~fpvCr~Cyeyer~eg----------~~~Cpqckt~Y~r~kgs 94 (1094)
T PLN02436 33 ELSGQTCQICGDEIELT--VDGEPFVACNECAFPVCRPCYEYERREG----------NQACPQCKTRYKRIKGS 94 (1094)
T ss_pred ccCCccccccccccCcC--CCCCEEEeeccCCCccccchhhhhhhcC----------CccCcccCCchhhccCC
Confidence 33456899999998654 4567888877899999999985444332 25999999999855444
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=29.51 E-value=25 Score=33.62 Aligned_cols=26 Identities=35% Similarity=0.764 Sum_probs=23.2
Q ss_pred CCCccCCCCCCCCCCCcCCCCCCCCC
Q 018703 34 ICTYYQKGFCSYGSRCRYEHVKPSRS 59 (351)
Q Consensus 34 ~C~~fl~G~C~~G~~C~y~H~~~~~~ 59 (351)
+|..|.++.|.+|..|.|.|.+..+.
T Consensus 154 ~C~~~e~~~C~rG~~CnFmH~k~~sr 179 (260)
T KOG2202|consen 154 ICGQFERTECSRGGACNFMHVKRLSR 179 (260)
T ss_pred hhcccccccCCCCCcCcchhhhhhhH
Confidence 69999999999999999999986543
No 165
>PF14353 CpXC: CpXC protein
Probab=25.13 E-value=49 Score=27.69 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=20.9
Q ss_pred cCCCcccccceeecCcccccC-chhHHHHHH
Q 018703 250 ACPICRKLSYFVIPSVIWYYT-PEEKQEIID 279 (351)
Q Consensus 250 ~CP~CR~~~~~vips~~w~~~-~~ek~~li~ 279 (351)
+||.|..++.+-+...+-+.. .+-|++|++
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~ 33 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILD 33 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc
Confidence 899999999987776544332 345666663
No 166
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.08 E-value=65 Score=36.74 Aligned_cols=66 Identities=24% Similarity=0.363 Sum_probs=47.4
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccCc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~~ 271 (351)
....|-||-|.|--. +.+..|..-..|+-.-|..|..-=|+.. ..+||+|++.....-.|. ||..+
T Consensus 14 ~~~~c~iCGd~vg~~--~~Ge~FVAC~eC~fpvCr~cyeye~~~g----------~~~cp~c~t~y~~~~~~~-~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVK--EDGQPFVACHVCGFPVCKPCYEYERSEG----------NQCCPQCNTRYKRHKGCP-RVEGD 79 (1044)
T ss_pred CcchhhccccccCcC--CCCCEEEEeccCCCccccchhhhhhhcC----------CccCCccCCchhhhcCCC-CccCC
Confidence 446799999998654 4566888888899999999984333222 259999999998655443 45543
No 167
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=78 Score=32.03 Aligned_cols=42 Identities=19% Similarity=0.508 Sum_probs=27.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhC
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~ 237 (351)
..-..|++|.-.| ++. .+.-...=. |+|-||..|-..|+...
T Consensus 304 ~~wr~CpkC~~~i-e~~--~GCnhm~Cr-C~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 304 KRWRQCPKCKFMI-ELS--EGCNHMTCR-CGHQFCYMCGGDWKTHN 345 (384)
T ss_pred HhcCcCcccceee-eec--CCcceEEee-ccccchhhcCcchhhCC
Confidence 4567899998854 443 122222333 88889999999998754
No 168
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.85 E-value=10 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.773 Sum_probs=15.6
Q ss_pred eecCCCCCcCcHHHHHHHhh
Q 018703 216 GLLSECDHPFCISCIRNWRS 235 (351)
Q Consensus 216 gil~~C~H~FC~~CI~~W~~ 235 (351)
..=+.|++.||..|-..|..
T Consensus 41 ~~C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 41 VTCPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp CCTTSCCSEECSSSTSESCT
T ss_pred eECCCCCCcCccccCcccCC
Confidence 34445999999999998843
No 169
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.83 E-value=86 Score=35.91 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=46.8
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~ 270 (351)
....|-||-|.|--. ..+..|..-..|+-.-|..|-.==|+.. ..+||+|++.....-.|. +|+.
T Consensus 16 ~~qiCqICGD~vg~~--~~Ge~FVAC~eC~FPVCrpCYEYEr~eG----------~q~CPqCktrYkr~kgsp-rv~g 80 (1079)
T PLN02638 16 GGQVCQICGDNVGKT--VDGEPFVACDVCAFPVCRPCYEYERKDG----------NQSCPQCKTKYKRHKGSP-AILG 80 (1079)
T ss_pred CCceeeecccccCcC--CCCCEEEEeccCCCccccchhhhhhhcC----------CccCCccCCchhhhcCCC-CcCc
Confidence 445899999998654 4566888888899999999984333322 249999999998654443 3543
No 170
>PLN02400 cellulose synthase
Probab=21.75 E-value=71 Score=36.57 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=47.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~ 270 (351)
......|-||-|.|--. .....|..-..|+-.-|..|-.==|+.. ..+||+|++.+...-.|. +|+.
T Consensus 33 ~~~gqiCqICGD~VG~t--~dGe~FVAC~eCaFPVCRpCYEYERkeG----------nq~CPQCkTrYkR~Kgsp-rV~G 99 (1085)
T PLN02400 33 NLNGQICQICGDDVGVT--ETGDVFVACNECAFPVCRPCYEYERKDG----------TQCCPQCKTRYRRHKGSP-RVEG 99 (1085)
T ss_pred ccCCceeeecccccCcC--CCCCEEEEEccCCCccccchhheecccC----------CccCcccCCccccccCCC-CCCc
Confidence 33456899999998654 4566888888899999999984322222 249999999998654333 3543
No 171
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=21.56 E-value=31 Score=36.49 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHHHhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 185 HLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 185 ~~~~~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
..+..+......|++|+.. .+.. + .=+++.+|+|-++..|+..|..... .|+.+++.+.+++-.
T Consensus 251 ~~~~deq~~~~~~~~~~~~-~~~~---e-qk~l~~~~~~~~g~tsl~~e~~~~~-----------v~~~~~tk~~~~~~e 314 (553)
T KOG4430|consen 251 KRELDEQENKNACGLCLSE-ADAK---E-QKGLEGNNQRQTGATSLMEEEAVES-----------VCPLRVTKVRTISKE 314 (553)
T ss_pred hhhhhhhhcccchhhchhh-HhHH---H-hhhhhhcccchhhhhhhhhhhhhhh-----------hhhcccccccccccc
Confidence 3444446667889999984 3332 1 2289999999999999999997643 799999998876543
No 172
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=44 Score=36.06 Aligned_cols=37 Identities=22% Similarity=0.575 Sum_probs=26.9
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhh
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (351)
-+-|.||+..++. ++.--+-..|+|+-|..|..+--.
T Consensus 11 ~l~c~ic~n~f~~-----~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 11 LLLCDICLNLFVV-----QRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred HhhchHHHHHHHH-----HhcCcccccccchHHHHHHHhHhh
Confidence 3569999776543 234445557999999999998764
No 173
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.94 E-value=88 Score=24.70 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=10.5
Q ss_pred ccccCchhHHHHHHHHH
Q 018703 266 IWYYTPEEKQEIIDSYK 282 (351)
Q Consensus 266 ~w~~~~~ek~~li~~yk 282 (351)
+|+. ..|-++||+.-+
T Consensus 30 VWLD-rGELdKli~r~r 45 (88)
T COG3809 30 VWLD-RGELDKLIERSR 45 (88)
T ss_pred Eeec-chhHHHHHHHhc
Confidence 5875 456778887653
No 174
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.56 E-value=1.6e+02 Score=33.01 Aligned_cols=41 Identities=27% Similarity=0.653 Sum_probs=29.2
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (351)
..|.+|--. ++=|. ..- .|+|.|...|.. .+. ..||.|+..
T Consensus 841 skCs~C~~~-LdlP~------VhF-~CgHsyHqhC~e----~~~----------~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGT-LDLPF------VHF-LCGHSYHQHCLE----DKE----------DKCPKCLPE 881 (933)
T ss_pred eeecccCCc-cccce------eee-ecccHHHHHhhc----cCc----------ccCCccchh
Confidence 378888764 45552 333 599999999998 222 489999983
No 175
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.39 E-value=1.1e+02 Score=21.54 Aligned_cols=37 Identities=35% Similarity=0.767 Sum_probs=20.9
Q ss_pred CCCcCCcccccCCChHHHHHHHHHHHHHHHHHHHHhcccCccccccccc
Q 018703 155 TCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDR 203 (351)
Q Consensus 155 ~c~~c~~~~LhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~~~C~IC~e~ 203 (351)
.|+.|++ -+ +...=.+|. ...| ....+...|+||-..
T Consensus 4 ~CP~C~~-~~---~~~~L~~H~---~~~H-----~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 4 TCPYCGK-GF---SESSLVEHC---EDEH-----RSESKNVVCPICSSR 40 (54)
T ss_pred CCCCCCC-cc---CHHHHHHHH---HhHC-----cCCCCCccCCCchhh
Confidence 4777887 32 334334452 2233 223457899999875
Done!