Query 018703
Match_columns 351
No_of_seqs 348 out of 1813
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.5 8.9E-15 3E-19 113.1 3.9 56 3-59 9-65 (77)
2 2rhk_C Cleavage and polyadenyl 99.5 7.5E-15 2.6E-19 112.1 2.0 55 3-58 15-70 (72)
3 2cqe_A KIAA1064 protein; CCCH 99.3 2.8E-12 9.5E-17 103.5 4.2 49 3-56 12-61 (98)
4 1m9o_A Tristetraproline; Cys3H 99.2 3.4E-12 1.2E-16 98.0 2.6 54 3-56 11-75 (77)
5 3d2q_A Muscleblind-like protei 99.2 1.7E-12 5.8E-17 98.5 0.6 54 3-57 5-66 (70)
6 3ztg_A E3 ubiquitin-protein li 99.2 1.8E-11 6.3E-16 96.3 6.3 73 191-284 10-82 (92)
7 1iym_A EL5; ring-H2 finger, ub 99.1 2.1E-11 7.2E-16 86.8 3.7 52 192-259 3-54 (55)
8 2e5s_A Otthump00000018578; ZF- 99.1 1.9E-12 6.5E-17 104.5 -2.1 55 3-58 19-81 (98)
9 1t1h_A Gspef-atpub14, armadill 99.1 4E-11 1.4E-15 91.5 5.1 69 191-285 5-75 (78)
10 2kiz_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 89.3 4.9 58 190-264 10-67 (69)
11 2yur_A Retinoblastoma-binding 99.1 3.4E-11 1.2E-15 91.4 3.8 51 191-258 12-62 (74)
12 2djb_A Polycomb group ring fin 99.1 4.1E-11 1.4E-15 90.3 4.1 51 191-260 12-62 (72)
13 3ng2_A RNF4, snurf, ring finge 99.1 2.8E-11 9.6E-16 90.4 2.8 58 189-259 5-62 (71)
14 2y43_A E3 ubiquitin-protein li 99.1 6.8E-11 2.3E-15 94.5 5.0 68 192-285 20-89 (99)
15 2csy_A Zinc finger protein 183 99.1 6.8E-11 2.3E-15 91.1 4.7 49 191-259 12-60 (81)
16 2ckl_A Polycomb group ring fin 99.1 7.3E-11 2.5E-15 95.9 5.0 53 190-261 11-63 (108)
17 2ea6_A Ring finger protein 4; 99.1 4.2E-11 1.4E-15 88.7 3.1 56 191-259 12-67 (69)
18 4ayc_A E3 ubiquitin-protein li 99.1 2.8E-10 9.5E-15 96.6 8.1 51 192-262 51-101 (138)
19 2xeu_A Ring finger protein 4; 99.1 4.7E-11 1.6E-15 87.2 2.7 54 193-259 2-55 (64)
20 2ep4_A Ring finger protein 24; 99.1 8.8E-11 3E-15 88.7 4.2 54 191-261 12-65 (74)
21 2ecl_A Ring-box protein 2; RNF 99.1 8.2E-11 2.8E-15 91.1 4.0 57 193-260 14-76 (81)
22 3lrq_A E3 ubiquitin-protein li 99.1 1.3E-10 4.4E-15 93.4 5.1 52 190-259 18-69 (100)
23 2ecm_A Ring finger and CHY zin 99.0 1.2E-10 4E-15 82.8 3.9 51 192-258 3-53 (55)
24 1g25_A CDK-activating kinase a 99.0 1.3E-10 4.4E-15 85.8 4.0 53 193-259 2-54 (65)
25 1chc_A Equine herpes virus-1 r 99.0 1.4E-10 4.8E-15 86.1 3.8 54 192-264 3-56 (68)
26 3fl2_A E3 ubiquitin-protein li 99.0 2.3E-10 8E-15 95.1 5.2 72 191-285 49-120 (124)
27 1jm7_A BRCA1, breast cancer ty 99.0 3.4E-10 1.2E-14 91.9 5.6 78 192-286 19-98 (112)
28 1x4j_A Ring finger protein 38; 99.0 1.5E-10 5.3E-15 87.8 3.0 52 191-259 20-71 (75)
29 2d8t_A Dactylidin, ring finger 99.0 1.3E-10 4.6E-15 87.2 2.5 49 191-259 12-60 (71)
30 3d2n_A Muscleblind-like protei 99.0 1.2E-10 4.2E-15 91.1 2.1 54 3-57 8-67 (83)
31 2l0b_A E3 ubiquitin-protein li 99.0 2.3E-10 7.8E-15 90.4 3.5 51 192-259 38-88 (91)
32 2ecy_A TNF receptor-associated 99.0 3.2E-10 1.1E-14 83.8 4.0 50 191-259 12-61 (66)
33 1v87_A Deltex protein 2; ring- 99.0 3.2E-10 1.1E-14 92.7 4.2 65 190-261 21-95 (114)
34 2ysl_A Tripartite motif-contai 99.0 3.6E-10 1.2E-14 84.9 4.0 52 191-259 17-68 (73)
35 2ect_A Ring finger protein 126 98.9 3.1E-10 1.1E-14 86.5 3.3 53 191-260 12-64 (78)
36 2kr4_A Ubiquitin conjugation f 98.9 1.3E-09 4.6E-14 85.2 6.2 66 192-284 12-79 (85)
37 2ct2_A Tripartite motif protei 98.9 6.8E-10 2.3E-14 86.1 4.4 56 191-259 12-67 (88)
38 2egp_A Tripartite motif-contai 98.9 3E-10 1E-14 86.5 2.2 56 191-259 9-64 (79)
39 1z6u_A NP95-like ring finger p 98.9 6.9E-10 2.3E-14 95.9 4.5 72 192-286 76-147 (150)
40 2cqe_A KIAA1064 protein; CCCH 98.9 1.6E-09 5.5E-14 87.3 6.2 33 22-54 2-35 (98)
41 2ysj_A Tripartite motif-contai 98.9 9.6E-10 3.3E-14 80.4 4.2 47 191-254 17-63 (63)
42 3l11_A E3 ubiquitin-protein li 98.9 2.9E-10 9.8E-15 93.3 1.5 50 192-260 13-62 (115)
43 2yu4_A E3 SUMO-protein ligase 98.9 1.9E-09 6.7E-14 85.7 6.3 75 192-286 5-84 (94)
44 2ecw_A Tripartite motif-contai 98.9 1.2E-09 4E-14 83.9 4.6 55 191-259 16-70 (85)
45 1jm7_B BARD1, BRCA1-associated 98.9 1.7E-09 5.9E-14 89.1 5.1 66 192-283 20-85 (117)
46 2ckl_B Ubiquitin ligase protei 98.9 1.2E-09 4E-14 95.2 4.3 69 193-283 53-121 (165)
47 2ecv_A Tripartite motif-contai 98.8 1.3E-09 4.5E-14 83.6 3.8 55 191-259 16-70 (85)
48 3dpl_R Ring-box protein 1; ubi 98.8 1.6E-09 5.6E-14 88.4 4.4 56 193-260 36-101 (106)
49 2kre_A Ubiquitin conjugation f 98.8 3E-09 1E-13 85.8 5.9 68 192-286 27-96 (100)
50 2ecn_A Ring finger protein 141 98.8 4.7E-10 1.6E-14 83.7 0.8 49 191-260 12-60 (70)
51 1wgm_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 84.8 5.9 67 192-285 20-89 (98)
52 2rpp_A Muscleblind-like protei 98.8 4.3E-10 1.5E-14 89.0 0.3 53 4-57 17-75 (89)
53 1e4u_A Transcriptional repress 98.8 2.1E-09 7.2E-14 82.9 4.1 55 191-260 8-62 (78)
54 2ecj_A Tripartite motif-contai 98.8 2.8E-09 9.4E-14 76.3 3.9 47 191-254 12-58 (58)
55 1m9o_A Tristetraproline; Cys3H 98.8 1.9E-09 6.4E-14 82.6 3.2 27 30-56 10-37 (77)
56 4ap4_A E3 ubiquitin ligase RNF 98.8 1.6E-09 5.4E-14 89.9 2.7 56 192-260 5-60 (133)
57 2rhk_C Cleavage and polyadenyl 98.8 2.7E-09 9.3E-14 81.2 3.4 27 30-56 14-40 (72)
58 1bor_A Transcription factor PM 98.8 8.6E-10 2.9E-14 79.4 0.4 47 191-260 3-49 (56)
59 3hct_A TNF receptor-associated 98.8 2.8E-09 9.6E-14 87.9 3.6 51 191-260 15-65 (118)
60 1rmd_A RAG1; V(D)J recombinati 98.8 4.4E-09 1.5E-13 86.2 4.7 48 193-259 22-69 (116)
61 2d9n_A Cleavage and polyadenyl 98.8 5E-09 1.7E-13 80.7 4.5 27 30-56 8-34 (77)
62 2vje_A E3 ubiquitin-protein li 98.7 4.1E-09 1.4E-13 78.0 2.5 56 190-264 4-61 (64)
63 3knv_A TNF receptor-associated 98.7 4.4E-09 1.5E-13 89.9 2.3 51 190-259 27-77 (141)
64 4a0k_B E3 ubiquitin-protein li 98.7 2.6E-09 9E-14 88.7 0.2 57 193-260 47-112 (117)
65 4ic3_A E3 ubiquitin-protein li 98.7 7.7E-09 2.6E-13 78.5 2.6 48 192-263 22-70 (74)
66 2c2l_A CHIP, carboxy terminus 98.7 2E-08 6.8E-13 93.3 5.7 67 192-284 206-274 (281)
67 4ap4_A E3 ubiquitin ligase RNF 98.6 9.1E-09 3.1E-13 85.2 2.5 56 191-259 69-124 (133)
68 2y1n_A E3 ubiquitin-protein li 98.6 3.1E-08 1.1E-12 97.6 5.0 55 190-263 328-382 (389)
69 2vje_B MDM4 protein; proto-onc 98.6 2.1E-08 7E-13 74.0 2.7 55 191-263 4-59 (63)
70 3d2q_A Muscleblind-like protei 98.5 4.6E-08 1.6E-12 73.9 3.4 25 32-56 6-31 (70)
71 2f42_A STIP1 homology and U-bo 98.5 9.6E-08 3.3E-12 84.9 5.6 67 192-284 104-172 (179)
72 2d8s_A Cellular modulator of i 98.5 5.9E-08 2E-12 75.1 3.5 54 191-260 12-70 (80)
73 2e5s_A Otthump00000018578; ZF- 98.5 3.4E-08 1.2E-12 79.5 1.4 26 31-56 19-45 (98)
74 1wim_A KIAA0161 protein; ring 98.5 4.4E-08 1.5E-12 77.5 1.9 58 192-258 3-62 (94)
75 2ecg_A Baculoviral IAP repeat- 98.5 6.4E-08 2.2E-12 73.5 2.7 47 193-263 24-71 (75)
76 3hcs_A TNF receptor-associated 98.5 7.5E-08 2.6E-12 84.0 3.5 51 191-260 15-65 (170)
77 3htk_C E3 SUMO-protein ligase 98.4 2.9E-07 9.8E-12 86.1 5.1 70 191-284 178-251 (267)
78 2ct0_A Non-SMC element 1 homol 98.4 3.4E-07 1.2E-11 69.9 4.5 55 193-264 14-68 (74)
79 2yho_A E3 ubiquitin-protein li 98.3 1.2E-07 4.2E-12 72.9 1.9 48 192-263 16-64 (79)
80 3d2n_A Muscleblind-like protei 98.3 5.1E-07 1.7E-11 70.4 3.9 26 31-56 8-34 (83)
81 2rpp_A Muscleblind-like protei 98.2 5.4E-07 1.8E-11 71.2 3.6 38 18-56 4-42 (89)
82 2ea5_A Cell growth regulator w 98.2 8.9E-07 3.1E-11 66.2 3.5 50 190-263 11-61 (68)
83 3vk6_A E3 ubiquitin-protein li 98.1 1.7E-06 5.9E-11 69.2 3.3 47 197-261 4-50 (101)
84 3t6p_A Baculoviral IAP repeat- 98.0 1.9E-06 6.7E-11 83.8 2.0 49 191-263 292-341 (345)
85 3u9g_A Zinc finger CCCH-type a 97.9 1.3E-05 4.3E-10 73.0 6.3 49 5-54 90-177 (229)
86 3k1l_B Fancl; UBC, ring, RWD, 97.9 4.1E-06 1.4E-10 81.0 2.2 66 193-259 307-372 (381)
87 2bay_A PRE-mRNA splicing facto 97.8 8.4E-06 2.9E-10 59.7 3.0 52 194-264 3-56 (61)
88 1vyx_A ORF K3, K3RING; zinc-bi 97.8 1.4E-05 4.8E-10 58.3 3.8 53 191-260 3-59 (60)
89 2d9m_A Zinc finger CCCH-type d 96.6 0.0012 4.1E-08 49.3 2.9 26 130-155 19-44 (69)
90 3u9g_A Zinc finger CCCH-type a 96.6 0.00089 3.1E-08 60.9 2.5 44 4-57 151-199 (229)
91 2d9m_A Zinc finger CCCH-type d 96.5 0.00084 2.9E-08 50.2 1.7 26 32-57 20-45 (69)
92 3nw0_A Non-structural maintena 95.9 0.013 4.5E-07 53.9 6.8 54 193-264 179-233 (238)
93 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.0062 2.1E-07 48.0 1.6 35 193-234 2-38 (101)
94 2fc6_A Nuclear, target of EGR1 94.6 0.027 9.3E-07 39.1 3.3 29 129-157 18-47 (50)
95 2fc6_A Nuclear, target of EGR1 94.4 0.011 3.8E-07 41.1 1.0 25 4-28 20-45 (50)
96 3u1l_A PRE-mRNA-splicing facto 92.7 0.028 9.6E-07 51.7 0.9 24 5-28 71-94 (240)
97 3u1l_A PRE-mRNA-splicing facto 92.0 0.032 1.1E-06 51.3 0.4 27 32-58 70-96 (240)
98 2lhn_A Nuclear polyadenylated 89.1 0.067 2.3E-06 41.0 0.0 42 4-54 9-50 (80)
99 2lhn_A Nuclear polyadenylated 81.9 0.31 1.1E-05 37.3 0.0 42 5-56 32-73 (80)
100 1weo_A Cellulose synthase, cat 76.1 3.8 0.00013 31.8 4.8 57 192-260 14-70 (93)
101 2ko5_A Ring finger protein Z; 63.3 2.4 8.3E-05 33.3 1.2 44 195-259 29-72 (99)
102 3ql9_A Transcriptional regulat 52.0 13 0.00046 30.6 3.9 51 191-257 54-111 (129)
103 2jmo_A Parkin; IBR, E3 ligase, 50.2 1.5 5E-05 33.1 -2.0 16 220-235 55-70 (80)
104 3m62_A Ubiquitin conjugation f 46.4 39 0.0013 36.8 7.4 69 190-284 887-957 (968)
105 2lri_C Autoimmune regulator; Z 42.1 16 0.00056 26.3 2.7 51 192-258 10-60 (66)
106 3v33_A Ribonuclease ZC3H12A; r 40.7 5.8 0.0002 35.9 0.0 24 130-155 191-214 (223)
107 2lbm_A Transcriptional regulat 33.8 42 0.0014 28.0 4.3 34 191-233 60-93 (142)
108 3a1b_A DNA (cytosine-5)-methyl 32.5 28 0.00095 29.8 3.0 68 191-268 76-147 (159)
109 2ysm_A Myeloid/lymphoid or mix 32.0 11 0.00037 29.8 0.3 38 191-234 4-41 (111)
110 2ct7_A Ring finger protein 31; 30.0 4 0.00014 31.0 -2.5 20 218-237 46-65 (86)
111 1z60_A TFIIH basal transcripti 29.8 19 0.00064 25.7 1.2 30 195-230 16-45 (59)
112 1zbd_B Rabphilin-3A; G protein 26.0 54 0.0019 27.0 3.6 67 192-270 53-120 (134)
113 2o35_A Hypothetical protein DU 24.9 28 0.00094 27.5 1.5 14 224-237 42-55 (105)
114 3fyb_A Protein of unknown func 24.7 28 0.00096 27.4 1.5 14 224-237 41-54 (104)
115 3mjh_B Early endosome antigen 20.1 22 0.00075 22.5 0.0 14 192-205 3-16 (34)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.9e-15 Score=113.11 Aligned_cols=56 Identities=38% Similarity=0.902 Sum_probs=52.3
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCCCccCC-CCCCCCCCCcCCCCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSRS 59 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~~~~~~~~~C~~fl~-G~C~~G~~C~y~H~~~~~~ 59 (351)
|+++|+||++|.|++|++|+|+|+++..++++|+||++ |.|. |+.|+|+|..+...
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred cceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 78999999999999999999999998888899999998 9999 99999999988544
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.47 E-value=7.5e-15 Score=112.14 Aligned_cols=55 Identities=38% Similarity=0.918 Sum_probs=51.3
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCCCccCC-CCCCCCCCCcCCCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSR 58 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~~~~~~~~~C~~fl~-G~C~~G~~C~y~H~~~~~ 58 (351)
++++|+||++|.|++|++|+|+|+++..++++|+||++ |.|.+ +.|+|.|..|+.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred cCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 78999999999999999999999998888899999999 99998 999999998843
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.25 E-value=2.8e-12 Score=103.52 Aligned_cols=49 Identities=37% Similarity=0.885 Sum_probs=46.0
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCCCccC-CCCCCCCCCCcCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~~C~f~H~~~~~~~~~C~~fl-~G~C~~G~~C~y~H~~~ 56 (351)
|+.+|+||++|.|++|++|+|+|+ ..+|++|+ +|.|.+|++|+|+|...
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~-----~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS-----SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCccCcccccCcCCCCCCCCCCCC-----CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 789999999999999999999998 67899995 99999999999999965
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.21 E-value=3.4e-12 Score=97.98 Aligned_cols=54 Identities=33% Similarity=0.893 Sum_probs=25.1
Q ss_pred Ccccccccc-cccCCCCCCCCCCCCCCCC---------CCCCCCccC-CCCCCCCCCCcCCCCCC
Q 018703 3 KRVLCKFFA-HGACLKGEHCEFSHDWKDP---------PNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 3 k~~~Cr~f~-~G~C~~G~~C~f~H~~~~~---------~~~~C~~fl-~G~C~~G~~C~y~H~~~ 56 (351)
|+.+|++|+ .|.|++|++|+|+|+.... ++.+|++|. .|.|.+|++|+|+|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 789999996 8999999999999998653 256898655 89999999999999864
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.21 E-value=1.7e-12 Score=98.45 Aligned_cols=54 Identities=33% Similarity=0.790 Sum_probs=47.1
Q ss_pred CcccccccccccCCCCC-CCCCCCCCC-------CCCCCCCCccCCCCCCCCCCCcCCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGE-HCEFSHDWK-------DPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~-~C~f~H~~~-------~~~~~~C~~fl~G~C~~G~~C~y~H~~~~ 57 (351)
|..+|++|++|.|++|+ .|+|+|+.+ ..++++|++|++|.|.+| .|+|.|..+.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~ 66 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAH 66 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCC-CcCeeCCHHH
Confidence 56799999999999999 599999764 345679999999999998 9999998763
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.20 E-value=1.8e-11 Score=96.34 Aligned_cols=73 Identities=21% Similarity=0.534 Sum_probs=52.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~ 270 (351)
..++.+|+||++. +.+| .+++.|+|+||..||.+|..... ...||+||..+.. +.. +..
T Consensus 10 ~~~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~~--~~~--~~~ 68 (92)
T 3ztg_A 10 IPDELLCLICKDI-MTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQNDVS--PDA--LIA 68 (92)
T ss_dssp CCTTTEETTTTEE-CSSC-------EECTTTCCEECHHHHHHHHHHCT---------TCCCTTTCCSSCC--TTS--CEE
T ss_pred CCcCCCCCCCChh-hcCc-------eECCCCCCHHHHHHHHHHHHhcC---------CCcCcCCCCcCCC--ccc--cCc
Confidence 3567899999995 5566 57766999999999999997542 1589999998621 111 122
Q ss_pred chhHHHHHHHHHhh
Q 018703 271 PEEKQEIIDSYKSK 284 (351)
Q Consensus 271 ~~ek~~li~~yk~~ 284 (351)
...-+.+|+.|+..
T Consensus 69 n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 69 NKFLRQAVNNFKNE 82 (92)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 33456788888764
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.14 E-value=2.1e-11 Score=86.79 Aligned_cols=52 Identities=31% Similarity=0.788 Sum_probs=41.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
+++.+|+||++.+.+. ....+++.|+|.||..||.+|...+ .+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~-----~~~~~~~~C~H~f~~~Ci~~w~~~~-----------~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-----EEARFLPRCGHGFHAECVDMWLGSH-----------STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTT-----SCCEECSSSCCEECTTHHHHTTTTC-----------CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCC-----CceEECCCCCCcccHHHHHHHHHcC-----------CcCcCCCCEeE
Confidence 4678999999975442 2336777899999999999999654 48999998753
No 8
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.9e-12 Score=104.46 Aligned_cols=55 Identities=33% Similarity=0.741 Sum_probs=48.5
Q ss_pred CcccccccccccCCCCC-CCCCCCCCCC-------CCCCCCCccCCCCCCCCCCCcCCCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~-~C~f~H~~~~-------~~~~~C~~fl~G~C~~G~~C~y~H~~~~~ 58 (351)
|..+|++|++|.|++|+ +|+|+|+.+. .+.++|.+|++|.|.+| .|+|.|..+..
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence 45799999999999999 8999999753 45679999999999988 99999998743
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.13 E-value=4e-11 Score=91.51 Aligned_cols=69 Identities=14% Similarity=0.383 Sum_probs=52.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCcccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~ 268 (351)
..++..|+||++. +.+| .++ .|+|+||..||.+|..... .+||+||..+.. ++|+
T Consensus 5 ~~~~~~C~IC~~~-~~~P-------v~~-~CgH~fc~~Ci~~~~~~~~----------~~CP~C~~~~~~~~l~~n---- 61 (78)
T 1t1h_A 5 FPEYFRCPISLEL-MKDP-------VIV-STGQTYERSSIQKWLDAGH----------KTCPKSQETLLHAGLTPN---- 61 (78)
T ss_dssp CSSSSSCTTTSCC-CSSE-------EEE-TTTEEEEHHHHHHHHTTTC----------CBCTTTCCBCSSCCCEEC----
T ss_pred CcccCCCCCcccc-ccCC-------EEc-CCCCeecHHHHHHHHHHCc----------CCCCCCcCCCChhhCccC----
Confidence 4567899999995 6666 456 5999999999999997422 589999998752 3443
Q ss_pred cCchhHHHHHHHHHhhc
Q 018703 269 YTPEEKQEIIDSYKSKL 285 (351)
Q Consensus 269 ~~~~ek~~li~~yk~~~ 285 (351)
..-+.+|++|++.-
T Consensus 62 ---~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 62 ---YVLKSLIALWCESN 75 (78)
T ss_dssp ---TTTHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHc
Confidence 23467899998653
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=89.32 Aligned_cols=58 Identities=29% Similarity=0.663 Sum_probs=45.0
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
....+.+|+||++.+... ....+| .|+|.||..||.+|...+ .+||+||..+...+|+
T Consensus 10 ~~~~~~~C~IC~~~~~~~-----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEG-----EDVRRL-PCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQLPS 67 (69)
T ss_dssp STTCCCSBTTTTBCCCSS-----SCEEEC-TTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCCCC
T ss_pred cCCCCCCCeeCCccccCC-----CcEEEe-CCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcCCC
Confidence 345678899999975432 123556 599999999999999865 3799999999877765
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.11 E-value=3.4e-11 Score=91.42 Aligned_cols=51 Identities=25% Similarity=0.649 Sum_probs=41.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
..++.+|+||++. +.+| .+++.|+|+||..||.+|...+. ...||+||..+
T Consensus 12 ~~~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDI-MTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQND 62 (74)
T ss_dssp SCGGGSCSSSCCC-CTTC-------EECSSSCCEECTTHHHHHHHHSS---------SSCCSSSCCSS
T ss_pred CCCCCCCcCCChH-HhCC-------eEcCCCCCHHHHHHHHHHHHhcC---------CCcCCCCCCcC
Confidence 3467899999996 5555 56766999999999999998652 25899999964
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.1e-11 Score=90.34 Aligned_cols=51 Identities=33% Similarity=0.611 Sum_probs=41.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..++.+|+||++. +.+| .++..|+|+||..||.+|...+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 62 (72)
T 2djb_A 12 LTPYILCSICKGY-LIDA-------TTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQ 62 (72)
T ss_dssp CCGGGSCTTTSSC-CSSC-------EECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCS
T ss_pred cCCCCCCCCCChH-HHCc-------CEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCc
Confidence 3457899999996 4445 5666799999999999999764 489999998764
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.10 E-value=2.8e-11 Score=90.41 Aligned_cols=58 Identities=33% Similarity=0.720 Sum_probs=42.8
Q ss_pred HhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 189 ~~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...+++.+|+||++.+.+ |...++. .++..|+|+||..||.+|...+ .+||+||..+.
T Consensus 5 ~~~~~~~~C~IC~~~~~~-~~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 62 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSE-IVQNGRL-IVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 62 (71)
T ss_dssp -CCTTCCBCTTTCCBHHH-HHTTTCC-EEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCcccChhhhc-cccccCC-eEeCCCCChHhHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 345678999999997543 2111222 3555799999999999999765 48999999876
No 14
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=6.8e-11 Score=94.49 Aligned_cols=68 Identities=21% Similarity=0.533 Sum_probs=50.3
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~~ 269 (351)
.++.+|+||++. +.+| .++..|+|+||..||.+|...+ .+||+||..+.. +.|
T Consensus 20 ~~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~l~~------ 74 (99)
T 2y43_A 20 DDLLRCGICFEY-FNIA-------MIIPQCSHNYCSLCIRKFLSYK-----------TQCPTCCVTVTEPDLKN------ 74 (99)
T ss_dssp HHHTBCTTTCSB-CSSE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCGGGCEE------
T ss_pred CCCCCcccCChh-hCCc-------CEECCCCCHhhHHHHHHHHHCC-----------CCCCCCCCcCChhhCCc------
Confidence 346889999996 4455 4565799999999999999753 489999998763 233
Q ss_pred CchhHHHHHHHHHhhc
Q 018703 270 TPEEKQEIIDSYKSKL 285 (351)
Q Consensus 270 ~~~ek~~li~~yk~~~ 285 (351)
...-+.+|+.|++.-
T Consensus 75 -n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 75 -NRILDELVKSLNFAR 89 (99)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHH
Confidence 233457788887543
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.8e-11 Score=91.08 Aligned_cols=49 Identities=24% Similarity=0.591 Sum_probs=39.7
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...+.+|+||++.+ .+| .++ .|+|+||..||.+|.... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~-~~p-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF-QNP-------VVT-KCRHYFCESCALEHFRAT-----------PRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC-CSE-------EEC-TTSCEEEHHHHHHHHHHC-----------SBCSSSCCBCC
T ss_pred CCCCCCCcCCCchh-cCe-------eEc-cCCCHhHHHHHHHHHHCC-----------CcCCCcCcccc
Confidence 34568999999964 444 344 699999999999999754 48999999986
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.08 E-value=7.3e-11 Score=95.87 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=42.7
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (351)
...++..|+||++. +.+| .++..|+|+||..||.+|...+ .+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGY-FIDA-------TTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSB-CSSE-------EEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChH-HhCc-------CEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCcccccc
Confidence 34568899999996 4555 5665799999999999999754 4899999998753
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.2e-11 Score=88.75 Aligned_cols=56 Identities=30% Similarity=0.685 Sum_probs=41.2
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++.+. ++....+.+.++ .|+|+||..||.+|...+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~-~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYS-EIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHH-HHTTTTCCEEEC-SSSCEEEHHHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred CCCCCCCcccCcccc-ccccccCCeEeC-CCCChhcHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 346789999999754 332222333444 699999999999999864 48999999764
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.07 E-value=2.8e-10 Score=96.61 Aligned_cols=51 Identities=33% Similarity=0.802 Sum_probs=40.3
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceee
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vi 262 (351)
.++.+|+||++. +.+| .++ .|+|+||..||.+|...+ .+||+||..+....
T Consensus 51 ~~~~~C~iC~~~-~~~~-------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 51 ENELQCIICSEY-FIEA-------VTL-NCAHSFCSYCINEWMKRK-----------IECPICRKDIKSKT 101 (138)
T ss_dssp HHHSBCTTTCSB-CSSE-------EEE-TTSCEEEHHHHHHHTTTC-----------SBCTTTCCBCCCEE
T ss_pred cccCCCcccCcc-cCCc-------eEC-CCCCCccHHHHHHHHHcC-----------CcCCCCCCcCCCCC
Confidence 346789999996 4454 456 599999999999999754 48999999886443
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.06 E-value=4.7e-11 Score=87.16 Aligned_cols=54 Identities=30% Similarity=0.696 Sum_probs=40.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
++.+|+||++.+. ++..+.+...++ .|+|+||..||.+|...+ .+||+||..+.
T Consensus 2 ~~~~C~IC~~~~~-~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYS-EIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHH-HHHHTTCCEEEE-TTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCT
T ss_pred CCCCCCccChhhh-CccccCCCEEeC-CCCCchhHHHHHHHHHcC-----------CCCCCCCccCC
Confidence 5789999999743 332222333444 699999999999999864 49999999875
No 20
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.8e-11 Score=88.70 Aligned_cols=54 Identities=24% Similarity=0.685 Sum_probs=42.2
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (351)
...+.+|+||++.+.+ + ....+|+ |+|.||..||.+|...+ .+||+||..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~-~----~~~~~~~-C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKP-R----DELGICP-CKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCS-S----SCEEEET-TTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCC-C----CcEEEcC-CCCEecHHHHHHHHHcC-----------CcCCCcCcccccc
Confidence 4567899999997543 2 2345665 99999999999999865 3899999987643
No 21
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.2e-11 Score=91.15 Aligned_cols=57 Identities=23% Similarity=0.595 Sum_probs=41.7
Q ss_pred cCccccccccccccC------CcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 193 QEIECSVCLDRVLSK------PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k------~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
++.+|+||++.+.+. +...+....+|+.|+|.|+..||.+|...+ .+||+||..+.+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----------NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----------CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----------CCCCCcCCCcch
Confidence 567899999976431 000122335676899999999999999765 399999998764
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=93.43 Aligned_cols=52 Identities=29% Similarity=0.779 Sum_probs=41.6
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...++..|+||++. +.+| .++..|+|+||..||.+|...+. ..||+||..+.
T Consensus 18 ~l~~~~~C~IC~~~-~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (100)
T 3lrq_A 18 SIAEVFRCFICMEK-LRDA-------RLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQ 69 (100)
T ss_dssp HHHHHTBCTTTCSB-CSSE-------EECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred cCCCCCCCccCCcc-ccCc-------cccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCC
Confidence 34467899999996 4455 45357999999999999998762 48999999975
No 23
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.04 E-value=1.2e-10 Score=82.77 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=39.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
+.+.+|+||++.+.+. +....++ .|+|+||..||.+|...+ .+||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTS----RVVAHVL-PCGHLLHRTCYEEMLKEG-----------YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTT----TSCEEEC-TTSCEEETTHHHHHHHHT-----------CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCC----CcCeEec-CCCCcccHHHHHHHHHcC-----------CcCCCCCCcC
Confidence 4578899999986442 2233455 599999999999999865 4899999875
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=1.3e-10 Score=85.78 Aligned_cols=53 Identities=23% Similarity=0.513 Sum_probs=39.4
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
++.+|+||++.++.+|. ..+.++ .|+|+||..||.+|..... ..||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~---~~~~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPS---LKLMVN-VCGHTLCESCVDLLFVRGA----------GNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSS---CCEEEC-TTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCc---cCeecC-CCCCHhHHHHHHHHHHcCC----------CcCCCCCCccc
Confidence 46889999994454441 233344 6999999999999976432 48999999875
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.02 E-value=1.4e-10 Score=86.06 Aligned_cols=54 Identities=26% Similarity=0.709 Sum_probs=42.5
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
..+.+|+||++.+. .+ .++..|+|+||..||.+|...+ .+||+||..+..++..
T Consensus 3 ~~~~~C~IC~~~~~-~~-------~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLEDPS-NY-------SMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSCCC-SC-------EEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEECC
T ss_pred CCCCCCeeCCcccc-CC-------cEecCCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhhhc
Confidence 45678999999743 33 2344699999999999999755 4899999998876654
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=95.12 Aligned_cols=72 Identities=17% Similarity=0.348 Sum_probs=50.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~ 270 (351)
..++.+|+||++. +.+| .++ .|+|+||..||..|..... ..||+||..+... .. +..
T Consensus 49 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~--~~--~~~ 105 (124)
T 3fl2_A 49 VEETFQCICCQEL-VFRP-------ITT-VCQHNVCKDCLDRSFRAQV----------FSCPACRYDLGRS--YA--MQV 105 (124)
T ss_dssp HHHHTBCTTTSSB-CSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT--CC--CCC
T ss_pred CccCCCCCcCChH-HcCc-------EEe-eCCCcccHHHHHHHHhHCc----------CCCCCCCccCCCC--CC--CCC
Confidence 3456899999996 5555 455 6999999999999997432 4999999987530 11 223
Q ss_pred chhHHHHHHHHHhhc
Q 018703 271 PEEKQEIIDSYKSKL 285 (351)
Q Consensus 271 ~~ek~~li~~yk~~~ 285 (351)
...-..+|++|....
T Consensus 106 n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 106 NQPLQTVLNQLFPGY 120 (124)
T ss_dssp CHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHHcccc
Confidence 344567777775443
No 27
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=3.4e-10 Score=91.89 Aligned_cols=78 Identities=24% Similarity=0.503 Sum_probs=50.8
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~~ 269 (351)
.++.+|+||++. +..| .++ .|+|+||..||.+|...+.. ...||+||..+.. +.++...-.
T Consensus 19 ~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~~~~~~~~~~l~~ 81 (112)
T 1jm7_A 19 QKILECPICLEL-IKEP-------VST-KCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDITKRSLQESTRFSQ 81 (112)
T ss_dssp HHHTSCSSSCCC-CSSC-------CBC-TTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCCTTTCBCCCSSSH
T ss_pred cCCCCCcccChh-hcCe-------EEC-CCCCHHHHHHHHHHHHhCCC--------CCCCcCCCCcCCHhhcCccHHHHH
Confidence 346789999996 5555 344 69999999999999986421 2589999998763 333322111
Q ss_pred CchhHHHHHHHHHhhcC
Q 018703 270 TPEEKQEIIDSYKSKLK 286 (351)
Q Consensus 270 ~~~ek~~li~~yk~~~~ 286 (351)
.-++-.++++.|...++
T Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (112)
T 1jm7_A 82 LVEELLKIICAFQLDTG 98 (112)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 12333455566665554
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-10 Score=87.76 Aligned_cols=52 Identities=35% Similarity=0.827 Sum_probs=40.6
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
.+++.+|+|||+.+.+. ....+|+ |+|.||..||.+|...+ .+||+||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~~-----~~~~~l~-C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-----QLLRVLP-CNHEFHAKCVDKWLKAN-----------RTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBT-----CEEEEET-TTEEEETTHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCC-----CeEEEEC-CCCHhHHHHHHHHHHcC-----------CcCcCcCCcCC
Confidence 34678899999975432 2445675 99999999999999765 48999998763
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=87.24 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=39.6
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++.+ .+| .++ .|+|+||..||.+|.... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~-~~~-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTC-VHP-------VSL-PCKHVFCYLCVKGASWLG-----------KRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBC-SSE-------EEE-TTTEEEEHHHHHHCTTCS-----------SBCSSSCCBCC
T ss_pred CCCCCCCccCCccc-CCC-------EEc-cCCCHHHHHHHHHHHHCC-----------CcCcCcCchhC
Confidence 45678999999964 443 456 599999999999999643 48999999875
No 30
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=91.08 Aligned_cols=54 Identities=31% Similarity=0.653 Sum_probs=47.2
Q ss_pred CcccccccccccCCCCC-CCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCcCCCCCCC
Q 018703 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (351)
Q Consensus 3 k~~~Cr~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~fl~G~C~~G~~C~y~H~~~~ 57 (351)
+..+|++|++|.|.+|+ .|+|+|+... ...++|.+|++|.|..+ .|+|.|..+.
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCC-CcceeCChHH
Confidence 45789999999999997 9999999753 34679999999999987 9999999764
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=90.40 Aligned_cols=51 Identities=29% Similarity=0.686 Sum_probs=40.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
.++.+|+|||+.+.+. ....+|+ |+|.||..||.+|...+ .+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~-----~~~~~l~-C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG-----DVATELP-CHHYFHKPCVSIWLQKS-----------GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTT-----CEEEEET-TTEEEEHHHHHHHHTTT-----------CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCC-----CcEEecC-CCChHHHHHHHHHHHcC-----------CcCcCcCccCC
Confidence 4568899999976442 2345676 99999999999999754 48999998763
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=83.83 Aligned_cols=50 Identities=32% Similarity=0.626 Sum_probs=39.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++. +.+| .++ .|+|+||..||.+|.... ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLV-LCSP-------KQT-ECGHRFCESCMAALLSSS----------SPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCE-ESSC-------CCC-SSSCCCCHHHHHHHHTTS----------SCCCTTTCCCCC
T ss_pred CCcCCCCCCCChH-hcCe-------eEC-CCCCHHHHHHHHHHHHhC----------cCCCCCCCcCCC
Confidence 3567899999996 4454 334 799999999999999632 158999999864
No 33
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.96 E-value=3.2e-10 Score=92.68 Aligned_cols=65 Identities=18% Similarity=0.508 Sum_probs=44.0
Q ss_pred hcccCccccccccccccCCc----------ccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPT----------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~----------~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
....+.+|+|||+.+.+ +. ......+.+..|+|+||..||.+|...... ....+||+||..+.
T Consensus 21 ~~~~~~~C~ICl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~------~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 21 KVAPEEDCIICMEKLAV-ASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK------DGSLQCPSCKTIYG 93 (114)
T ss_dssp SSCCSCEETTTTEETTS-CCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC------SSCCBCTTTCCBSS
T ss_pred cCCCCCcCccCChhhcC-cccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC------CCCCcCCCCCCccC
Confidence 34456799999998543 21 011233445679999999999999964321 11359999999886
Q ss_pred ee
Q 018703 260 FV 261 (351)
Q Consensus 260 ~v 261 (351)
..
T Consensus 94 ~~ 95 (114)
T 1v87_A 94 EK 95 (114)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 34
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.6e-10 Score=84.88 Aligned_cols=52 Identities=35% Similarity=0.863 Sum_probs=40.2
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++. +.+| .++ .|+|+||..||.+|..... ....||+||..+.
T Consensus 17 ~~~~~~C~IC~~~-~~~~-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDI-LQKP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSB-CSSE-------EEC-TTCCEEEHHHHHHHCSSSC--------SCCCCSSSCCCCC
T ss_pred CccCCEeccCCcc-cCCe-------EEc-CCCChhhHHHHHHHHHcCC--------CCCCCCCCCCcCC
Confidence 4567899999996 4454 455 6999999999999997321 1258999999875
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.95 E-value=3.1e-10 Score=86.53 Aligned_cols=53 Identities=32% Similarity=0.656 Sum_probs=40.7
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
...+.+|+||++.+.+ + ....+| .|+|+||..||.+|...+ .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-~----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYAL-G----ESVRQL-PCNHLFHDSCIVPWLEQH-----------DSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCT-T----SCEEEC-TTSCEEETTTTHHHHTTT-----------CSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccC-C----CCEEEe-CCCCeecHHHHHHHHHcC-----------CcCcCcCCccCC
Confidence 3457899999997543 2 233456 499999999999999644 489999998763
No 36
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.92 E-value=1.3e-09 Score=85.15 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=51.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~~ 269 (351)
.++..|+||++ ++.+| .+++ |||+||..||.+|.... .+||+||.++.. ++|+
T Consensus 12 p~~~~CpI~~~-~m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~~l~pn----- 66 (85)
T 2kr4_A 12 PDEFRDPLMDT-LMTDP-------VRLP-SGTVMDRSIILRHLLNS-----------PTDPFNRQMLTESMLEPV----- 66 (85)
T ss_dssp CTTTBCTTTCS-BCSSE-------EECT-TSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC-----
T ss_pred chheECcccCc-hhcCC-------eECC-CCCEECHHHHHHHHhcC-----------CCCCCCcCCCChHhcchH-----
Confidence 46789999999 57777 6776 99999999999999853 489999998753 3333
Q ss_pred CchhHHHHHHHHHhh
Q 018703 270 TPEEKQEIIDSYKSK 284 (351)
Q Consensus 270 ~~~ek~~li~~yk~~ 284 (351)
..-..+|+.|++.
T Consensus 67 --~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 67 --PELKEQIQAWMRE 79 (85)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3456788888654
No 37
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.8e-10 Score=86.11 Aligned_cols=56 Identities=27% Similarity=0.683 Sum_probs=41.9
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++.+.+. ++...+| .|+|+||..||.+|...+. ....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEE----QLRPKLL-HCGHTICRQCLEKLLASSI--------NGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTT----SSCEEEC-SSSCEEEHHHHHHHHHHCS--------SCBCCTTTCCCBC
T ss_pred ccCCCCCccCCcccccc----CCCeEEC-CCCChhhHHHHHHHHHcCC--------CCcCCCCCCCccc
Confidence 45678999999975432 2223566 5999999999999998652 1259999999865
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.92 E-value=3e-10 Score=86.52 Aligned_cols=56 Identities=30% Similarity=0.698 Sum_probs=41.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++. +.+| .+| .|+|+||..||.+|....... ......||+||..+.
T Consensus 9 ~~~~~~C~IC~~~-~~~p-------~~l-~CgH~fC~~Ci~~~~~~~~~~----~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLEL-LTEP-------LSL-DCGHSLCRACITVSNKEAVTS----MGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEE-CSSC-------CCC-SSSCCCCHHHHSCCCCCCSSS----CCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcc-cCCe-------eEC-CCCCHHHHHHHHHHHHhcccC----CCCCCcCCCCCCcCC
Confidence 4567899999996 5555 345 599999999999999764211 112369999999875
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=6.9e-10 Score=95.87 Aligned_cols=72 Identities=24% Similarity=0.423 Sum_probs=51.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccCc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~~ 271 (351)
.++..|+||++. +.+| .++ .|+|+||..||.+|..... ..||+||..+... .. +...
T Consensus 76 ~~~~~C~IC~~~-~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~---~~-l~~n 132 (150)
T 1z6u_A 76 EQSFMCVCCQEL-VYQP-------VTT-ECFHNVCKDCLQRSFKAQV----------FSCPACRHDLGQN---YI-MIPN 132 (150)
T ss_dssp HHHTBCTTTSSB-CSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT---CC-CCBC
T ss_pred ccCCEeecCChh-hcCC-------EEc-CCCCchhHHHHHHHHHhCC----------CcCCCCCccCCCC---CC-CCCC
Confidence 456899999995 5555 455 6999999999999997542 4899999987632 01 1223
Q ss_pred hhHHHHHHHHHhhcC
Q 018703 272 EEKQEIIDSYKSKLK 286 (351)
Q Consensus 272 ~ek~~li~~yk~~~~ 286 (351)
..-+.||+.|.....
T Consensus 133 ~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 133 EILQTLLDLFFPGYS 147 (150)
T ss_dssp HHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHhhHhh
Confidence 345678888875443
No 40
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.90 E-value=1.6e-09 Score=87.26 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=29.9
Q ss_pred CCCCCCCC-CCCCCCCccCCCCCCCCCCCcCCCC
Q 018703 22 EFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHV 54 (351)
Q Consensus 22 ~f~H~~~~-~~~~~C~~fl~G~C~~G~~C~y~H~ 54 (351)
.|+|+... .++.+|+||++|.|.+|+.|+|+|.
T Consensus 2 ~~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 2 SSGSSGELPKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccccCCCCCCCccCcccccCcCCCCCCCCCCCC
Confidence 37899876 6788999999999999999999997
No 41
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.6e-10 Score=80.43 Aligned_cols=47 Identities=38% Similarity=0.969 Sum_probs=36.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
..++.+|+||++. +.+| .+| .|+|+||..||.+|..... ....||+|
T Consensus 17 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDI-LQKP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSB-CSSC-------EEC-TTSSEECHHHHHHHHHHCS--------SCCCCSCC
T ss_pred CccCCCCCcCCch-hCCe-------EEe-CCCCcchHHHHHHHHHcCC--------CCCcCcCC
Confidence 4567899999996 5555 456 6999999999999998532 12589998
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.89 E-value=2.9e-10 Score=93.27 Aligned_cols=50 Identities=28% Similarity=0.765 Sum_probs=40.2
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
.++.+|+||++. +.+| .+| .|+|+||..||.+|..... ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEI-LVEP-------VTL-PCNHTLCKPCFQSTVEKAS----------LCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSB-CSSC-------EEC-TTSCEECHHHHCCCCCTTT----------SBCTTTCCBCHH
T ss_pred CCCCCCccCCcc-cCce-------eEc-CCCCHHhHHHHHHHHhHCc----------CCCCCCCcccCc
Confidence 346889999996 5555 566 6999999999999996432 589999999863
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=1.9e-09 Score=85.70 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=54.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC--cccc---cceeecCcc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKL---SYFVIPSVI 266 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~---~~~vips~~ 266 (351)
.++..|+||++ ++.+| .+++.|+|+||..||.+|...... .....+||+ |+.. ..-++|+
T Consensus 5 ~~~~~CPI~~~-~~~dP-------V~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~~~L~pn-- 69 (94)
T 2yu4_A 5 SSGFTCPITKE-EMKKP-------VKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRKSDLIQD-- 69 (94)
T ss_dssp SSCCBCTTTCS-BCSSE-------EEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCGGGEEEC--
T ss_pred CcEeECcCcCc-hhcCC-------EEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCHhhCcCC--
Confidence 46789999999 57777 677679999999999999976410 011358999 9954 4445555
Q ss_pred cccCchhHHHHHHHHHhhcC
Q 018703 267 WYYTPEEKQEIIDSYKSKLK 286 (351)
Q Consensus 267 w~~~~~ek~~li~~yk~~~~ 286 (351)
..-..+|+.|++...
T Consensus 70 -----~~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 70 -----EALRRAIENHNKKRH 84 (94)
T ss_dssp -----HHHHHHHHHHHTTCC
T ss_pred -----HHHHHHHHHHHHHhc
Confidence 345688999986654
No 44
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.89 E-value=1.2e-09 Score=83.91 Aligned_cols=55 Identities=31% Similarity=0.728 Sum_probs=41.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++. +.+| .++ .|+|+||..||.+|...... ......||+||..+.
T Consensus 16 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLEL-LKEP-------VSA-DCNHSFCRACITLNYESNRN-----TDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSC-CSSC-------EEC-TTSCCBCHHHHHHHHHHSBC-----TTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChh-hCcc-------eeC-CCCCHHHHHHHHHHHHhccC-----CCCCCCCCCCCCcCC
Confidence 3457899999996 4555 355 59999999999999987421 112369999999876
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=1.7e-09 Score=89.07 Aligned_cols=66 Identities=23% Similarity=0.622 Sum_probs=47.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccCc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~~ 271 (351)
.++.+|+||++. +.+| .++..|+|+||..||..|.. ..||+||..+.. +. +...
T Consensus 20 ~~~~~C~IC~~~-~~~p-------v~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~--~~---~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNI-LREP-------VCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWI--QD---LKIN 73 (117)
T ss_dssp HHTTSCSSSCSC-CSSC-------BCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSC--SS---CCCC
T ss_pred hhCCCCCCCChH-hhCc-------cEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCcc--cc---cccc
Confidence 467999999995 5566 56647999999999999985 289999999743 11 1222
Q ss_pred hhHHHHHHHHHh
Q 018703 272 EEKQEIIDSYKS 283 (351)
Q Consensus 272 ~ek~~li~~yk~ 283 (351)
..-..||+.|+.
T Consensus 74 ~~l~~l~~~~~~ 85 (117)
T 1jm7_B 74 RQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334566666654
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.86 E-value=1.2e-09 Score=95.24 Aligned_cols=69 Identities=29% Similarity=0.526 Sum_probs=47.3
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccCch
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE 272 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~~~ 272 (351)
++..|+||++. +.+| .++..|+|+||..||.+|..... ..||+||..+... . -+....
T Consensus 53 ~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~--~--~l~~~~ 110 (165)
T 2ckl_B 53 SELMCPICLDM-LKNT-------MTTKECLHRFCADCIITALRSGN----------KECPTCRKKLVSK--R--SLRPDP 110 (165)
T ss_dssp HHHBCTTTSSB-CSSE-------EEETTTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCCSG--G--GEEECH
T ss_pred CCCCCcccChH-hhCc-------CEeCCCCChhHHHHHHHHHHhCc----------CCCCCCCCcCCCc--c--cCCcCH
Confidence 45789999996 4445 45657999999999999997532 5899999987420 0 012223
Q ss_pred hHHHHHHHHHh
Q 018703 273 EKQEIIDSYKS 283 (351)
Q Consensus 273 ek~~li~~yk~ 283 (351)
.-+.||+.++.
T Consensus 111 ~l~~~i~~~~~ 121 (165)
T 2ckl_B 111 NFDALISKIYP 121 (165)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHc
Confidence 34567777754
No 47
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.3e-09 Score=83.60 Aligned_cols=55 Identities=31% Similarity=0.781 Sum_probs=40.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++.+|+||++. +.+| .++ .|+|+||..||.+|...... ......||+||..+.
T Consensus 16 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLEL-LTQP-------LSL-DCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSC-CSSC-------BCC-SSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcc-cCCc-------eeC-CCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccC
Confidence 3467899999996 4444 345 69999999999999876210 011358999999886
No 48
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.85 E-value=1.6e-09 Score=88.39 Aligned_cols=56 Identities=21% Similarity=0.578 Sum_probs=40.2
Q ss_pred cCccccccccccccCC---------ccc-ccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 193 QEIECSVCLDRVLSKP---------TAA-ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~---------~~~-~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
++.+|+||++.+.+.- .++ +....++ .|+|.|+..||.+|...+ .+||+||..+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE-TTSCEEEHHHHHHHHTTC-----------SBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeec-ccCcEECHHHHHHHHHcC-----------CcCcCCCCccee
Confidence 5678999999765420 011 2223344 699999999999999764 489999998654
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.84 E-value=3e-09 Score=85.83 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=52.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~~ 269 (351)
.++..|+||++ ++.+| .+++ |+|+||..||.+|.... .+||+||.++.. ++|+
T Consensus 27 p~~~~CpI~~~-~m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~~L~pn----- 81 (100)
T 2kre_A 27 PDEFRDPLMDT-LMTDP-------VRLP-SGTIMDRSIILRHLLNS-----------PTDPFNRQTLTESMLEPV----- 81 (100)
T ss_dssp STTTBCTTTCS-BCSSE-------EEET-TTEEEEHHHHHHHTTSC-----------SBCSSSCCBCCTTSSEEC-----
T ss_pred cHhhCCcCccC-cccCC-------eECC-CCCEEchHHHHHHHHcC-----------CCCCCCCCCCChhhceEC-----
Confidence 35789999999 57777 6776 99999999999999742 489999998752 3333
Q ss_pred CchhHHHHHHHHHhhcC
Q 018703 270 TPEEKQEIIDSYKSKLK 286 (351)
Q Consensus 270 ~~~ek~~li~~yk~~~~ 286 (351)
..-..+|+.|++.-.
T Consensus 82 --~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 82 --PELKEQIQAWMREKQ 96 (100)
T ss_dssp --HHHHHHHHHHHHTTT
T ss_pred --HHHHHHHHHHHHHhh
Confidence 456688999986543
No 50
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.7e-10 Score=83.72 Aligned_cols=49 Identities=39% Similarity=0.901 Sum_probs=39.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..++.+|+||++.+.+ .++ .|+|.||..||.+|...+ .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---------LIL-PCAHSFCQKCIDKWSDRH-----------RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS---------EEE-TTTEEECHHHHHHSSCCC-----------SSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC---------ccc-CCCCcccHHHHHHHHHCc-----------CcCCCcCCcccC
Confidence 4567899999997432 455 599999999999999733 589999998764
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.83 E-value=3.9e-09 Score=84.85 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=51.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCC-CcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCcccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECD-HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~-H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~ 268 (351)
.++..|+||++ ++.+| .++ .|+ |+||..||.+|.... .+||+||.++.. ++|
T Consensus 20 p~~~~CpI~~~-~m~dP-------V~~-~cG~htf~r~cI~~~l~~~-----------~~cP~~~~~l~~~~L~p----- 74 (98)
T 1wgm_A 20 CDEFLDPIMST-LMCDP-------VVL-PSSRVTVDRSTIARHLLSD-----------QTDPFNRSPLTMDQIRP----- 74 (98)
T ss_dssp CTTTBCTTTCS-BCSSE-------EEC-TTTCCEEEHHHHHHHTTTS-----------CBCTTTCSBCCTTTSEE-----
T ss_pred cHhcCCcCccc-cccCC-------eEC-CCCCeEECHHHHHHHHHhC-----------CCCCCCCCCCChhhceE-----
Confidence 45789999999 57777 566 488 999999999999752 489999998753 333
Q ss_pred cCchhHHHHHHHHHhhc
Q 018703 269 YTPEEKQEIIDSYKSKL 285 (351)
Q Consensus 269 ~~~~ek~~li~~yk~~~ 285 (351)
...-..+|+.|++.-
T Consensus 75 --n~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 75 --NTELKEKIQRWLAER 89 (98)
T ss_dssp --CHHHHHHHHHHHHHS
T ss_pred --cHHHHHHHHHHHHHc
Confidence 345667899997654
No 52
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.83 E-value=4.3e-10 Score=89.03 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=46.9
Q ss_pred cccccccccccCCCCC-CCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCcCCCCCCC
Q 018703 4 RVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (351)
Q Consensus 4 ~~~Cr~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~fl~G~C~~G~~C~y~H~~~~ 57 (351)
..+|+.|++|.|.+|+ .|+|+|+.+. .+.++|.+|++|.|..+ .|+|.|..+.
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCC-CcceecCHHH
Confidence 5689999999999998 9999998764 35689999999999976 9999999764
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=2.1e-09 Score=82.95 Aligned_cols=55 Identities=24% Similarity=0.546 Sum_probs=40.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..++.+|+||||.+..+ +..|.-+ .|+|.||..||.+|.... ...||+||.++..
T Consensus 8 ~~~~~~CpICle~~~~~----d~~~~p~-~CGH~fC~~Cl~~~~~~~----------~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEID----DINFFPC-TCGYQICRFCWHRIRTDE----------NGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTT----TTTCCSS-TTSCCCCHHHHHHHTTSS----------CSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccc----ccccccc-CCCCCcCHHHHHHHHhcC----------CCCCCCCCCccCC
Confidence 35678999999975322 1233333 499999999999987532 2599999998863
No 54
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.8e-09 Score=76.28 Aligned_cols=47 Identities=40% Similarity=0.981 Sum_probs=35.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (351)
..++.+|+||++. +.+| .+| .|+|+||..||.+|..... ...+||+|
T Consensus 12 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEY-LKEP-------VII-ECGHNFCKACITRWWEDLE--------RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCB-CSSC-------CCC-SSCCCCCHHHHHHHTTSSC--------CSCCCSCC
T ss_pred cccCCCCccCCcc-cCcc-------EeC-CCCCccCHHHHHHHHHhcC--------CCCCCCCC
Confidence 3467899999996 4444 345 6999999999999976421 13589998
No 55
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.80 E-value=1.9e-09 Score=82.56 Aligned_cols=27 Identities=30% Similarity=0.839 Sum_probs=24.2
Q ss_pred CCCCCCCccC-CCCCCCCCCCcCCCCCC
Q 018703 30 PPNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 30 ~~~~~C~~fl-~G~C~~G~~C~y~H~~~ 56 (351)
.++.+|++|+ .|.|.+|++|+|+|...
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCCh
Confidence 4678999996 89999999999999875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=1.6e-09 Score=89.86 Aligned_cols=56 Identities=30% Similarity=0.704 Sum_probs=41.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
+++.+|+||++.+. +|..+++. .++..|+|+||.+||.+|...+ .+||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~-~~~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYS-EIVQNGRL-IVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHH-HHHHTTCC-EEEETTCCEEEHHHHHHHHTTC-----------SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhh-CccccccC-eEecCCCChhhHHHHHHHHHhC-----------CCCCCCCCcCcc
Confidence 56789999999743 33111222 3444799999999999999754 499999999863
No 57
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=81.19 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=24.3
Q ss_pred CCCCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 30 PPNNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 30 ~~~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
.+..+|+||++|.|.+|+.|+|+|...
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccccc
Confidence 567899999999999999999999853
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=8.6e-10 Score=79.38 Aligned_cols=47 Identities=30% Similarity=0.665 Sum_probs=37.2
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..++.+|+||++. +.+| .+|+ |+|+||..||.+|. ..||+||..+..
T Consensus 3 e~~~~~C~IC~~~-~~~p-------~~l~-CgH~fC~~Ci~~~~--------------~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAE-AKCP-------KLLP-CLHTLCSGCLEASG--------------MQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSS-CBCC-------SCST-TSCCSBTTTCSSSS--------------SSCSSCCSSSSC
T ss_pred cccCCCceEeCCc-cCCe-------EEcC-CCCcccHHHHccCC--------------CCCCcCCcEeec
Confidence 3567899999996 5555 4665 99999999998841 489999998753
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=2.8e-09 Score=87.91 Aligned_cols=51 Identities=25% Similarity=0.572 Sum_probs=40.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..++..|+||++. +.+| .++ .|+|+||..||.+|...+. .+||+||..+..
T Consensus 15 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMA-LREA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCG
T ss_pred CCCCCCCCcCChh-hcCe-------EEC-CcCChhhHHHHHHHHhhCC----------CCCCCCCCCcCH
Confidence 4567899999996 4454 445 6999999999999998653 389999998753
No 60
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.77 E-value=4.4e-09 Score=86.23 Aligned_cols=48 Identities=31% Similarity=0.707 Sum_probs=38.9
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
++..|+||++. +.+| .++ .|+|+||..||.+|..... .+||+||..+.
T Consensus 22 ~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHI-LADP-------VET-SCKHLFCRICILRCLKVMG----------SYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCCCCcH-hcCc-------EEc-CCCCcccHHHHHHHHhHCc----------CcCCCCCCCCC
Confidence 46889999996 5555 344 6999999999999998642 48999999875
No 61
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5e-09 Score=80.65 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=24.5
Q ss_pred CCCCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 30 PPNNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 30 ~~~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
.+..+|+||++|.|.+|+.|+|+|...
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYD 34 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred CcceeCHhHccCcCCCCCCCCCccccc
Confidence 567899999999999999999999864
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.72 E-value=4.1e-09 Score=78.01 Aligned_cols=56 Identities=18% Similarity=0.570 Sum_probs=41.6
Q ss_pred hcccCccccccccccccCCcccccceeec-CCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil-~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
..+++.+|.|||+...+ + .++ ..|+|. ||.+|+.+|...+ ..||+||.++..+++-
T Consensus 4 ~~~~~~~C~IC~~~~~~-~-------~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKN-G-------CIVHGKTGHLMACFTCAKKLKKRN-----------KPCPVCRQPIQMIVLT 61 (64)
T ss_dssp -CGGGSCCTTTSSSCSC-E-------EEEETTEEEEEECHHHHHHHHHTT-----------CCCTTTCCCCCEEEEE
T ss_pred CCCCcCCCCcCCCCCCC-E-------EEECCCCCChhhHHHHHHHHHHcC-----------CcCCCcCcchhceEee
Confidence 34567899999996322 1 333 159999 8999999999743 4899999999876653
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=4.4e-09 Score=89.92 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=40.0
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...++.+|+||++. +.+| .. ..|+|+||..||.+|..... .+||+||....
T Consensus 27 ~l~~~~~C~IC~~~-~~~p-------v~-~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNV-LRRP-------FQ-AQCGHRYCSFCLASILSSGP----------QNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSB-CSSE-------EE-CTTSCEEEHHHHHHHGGGSC----------EECHHHHHTTC
T ss_pred cCCcCcCCCCCChh-hcCc-------EE-CCCCCccCHHHHHHHHhcCC----------CCCCCCCCccc
Confidence 44567899999995 5555 34 47999999999999997542 48999999753
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.67 E-value=2.6e-09 Score=88.70 Aligned_cols=57 Identities=21% Similarity=0.545 Sum_probs=0.9
Q ss_pred cCccccccccccccCCc---------ccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 193 QEIECSVCLDRVLSKPT---------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~---------~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
.+.+|+||++.+.+.-. +++.--.++..|+|.|+..||.+|...+ .+||+||..+.|
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF 112 (117)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-----------CcCCCCCCeeee
Confidence 35689999998654200 0111123445799999999999999765 489999998654
No 65
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.66 E-value=7.7e-09 Score=78.54 Aligned_cols=48 Identities=27% Similarity=0.694 Sum_probs=38.2
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
.++.+|.||++... .+ .+| .|+|. ||..||.+| . .||+||..+..++.
T Consensus 22 ~~~~~C~iC~~~~~-~~-------~~~-pCgH~~~C~~C~~~~---~------------~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 22 QEEKLCKICMDRNI-AI-------VFV-PCGHLVTCKQCAEAV---D------------KCPMCYTVITFKQK 70 (74)
T ss_dssp HHHTBCTTTSSSBC-CE-------EEE-TTCCBCCCHHHHTTC---S------------BCTTTCCBCSEEEE
T ss_pred ccCCCCCCCCCCCC-CE-------EEc-CCCChhHHHHhhhcC---c------------cCCCcCcCccCcEE
Confidence 45678999999643 33 455 59999 999999999 1 89999999886654
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=2e-08 Score=93.26 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=51.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc--eeecCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIWYY 269 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~vips~~w~~ 269 (351)
..+..|+||++ ++.+| .+++ |+|+||..||..|..... .+||+||.++. -++|+
T Consensus 206 ~~~~~c~i~~~-~~~dP-------v~~~-~gh~f~~~~i~~~~~~~~----------~~cP~~~~~~~~~~l~~n----- 261 (281)
T 2c2l_A 206 PDYLCGKISFE-LMREP-------CITP-SGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQEQLIPN----- 261 (281)
T ss_dssp CSTTBCTTTCS-BCSSE-------EECS-SCCEEETTHHHHHHHHTC----------SSCTTTCCCCCGGGCEEC-----
T ss_pred CcccCCcCcCC-HhcCC-------eECC-CCCEECHHHHHHHHHHCC----------CCCcCCCCCCchhcCccc-----
Confidence 45789999999 57777 5665 999999999999998643 35999999885 24443
Q ss_pred CchhHHHHHHHHHhh
Q 018703 270 TPEEKQEIIDSYKSK 284 (351)
Q Consensus 270 ~~~ek~~li~~yk~~ 284 (351)
..-..+|+.|.+.
T Consensus 262 --~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 262 --LAMKEVIDAFISE 274 (281)
T ss_dssp --HHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHH
Confidence 3456889988754
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=9.1e-09 Score=85.20 Aligned_cols=56 Identities=30% Similarity=0.699 Sum_probs=41.6
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..++..|+||++.+. ++....+. .++..|+|+||..||.+|...+ ++||+||..+.
T Consensus 69 ~~~~~~C~iC~~~~~-~~~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYS-EIVQNGRL-IVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHH-HHHHTTCC-EEEETTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccc-cccccCcc-eEeCCCCChhhHHHHHHHHHcC-----------CCCCCCCCcCC
Confidence 356789999999744 33222222 3445799999999999999865 59999999875
No 68
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.58 E-value=3.1e-08 Score=97.63 Aligned_cols=55 Identities=27% Similarity=0.627 Sum_probs=41.6
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
..+.+.+|+||++.+ .+| .++ .|+|.||..||..|..... .+||+||..+.....
T Consensus 328 ~~~~~~~C~ICle~~-~~p-------v~l-pCGH~FC~~Ci~~wl~~~~----------~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 328 MGSTFQLCKICAEND-KDV-------KIE-PCGHLMCTSCLTSWQESEG----------QGCPFCRCEIKGTEP 382 (389)
T ss_dssp TTTSSSBCTTTSSSB-CCE-------EEE-TTCCEECHHHHHHHHHHTC----------SBCTTTCCBCCEEEE
T ss_pred hcCCCCCCCccCcCC-CCe-------EEe-CCCChhhHHHHHHHHhcCC----------CCCCCCCCccCCcee
Confidence 334457999999974 333 445 6999999999999997432 589999999875433
No 69
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.57 E-value=2.1e-08 Score=73.96 Aligned_cols=55 Identities=27% Similarity=0.559 Sum_probs=40.4
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
.+.+.+|.|||+...+ + .+.+ ..|+|. ||..|+.+|.... ..||+||.++..++.
T Consensus 4 ~~~~~~C~IC~~~~~~-~-----~~~~-~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRD-G-----NIIH-GRTGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVIK 59 (63)
T ss_dssp GGGGSBCTTTSSSBSC-E-----EEEE-TTEEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEEE
T ss_pred CCcCCCCcccCCcCCC-e-----EEEe-cCCCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceEE
Confidence 3456789999996322 1 1222 359998 9999999998643 489999999887654
No 70
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.52 E-value=4.6e-08 Score=73.90 Aligned_cols=25 Identities=36% Similarity=0.903 Sum_probs=22.5
Q ss_pred CCCCCccCCCCCCCCC-CCcCCCCCC
Q 018703 32 NNICTYYQKGFCSYGS-RCRYEHVKP 56 (351)
Q Consensus 32 ~~~C~~fl~G~C~~G~-~C~y~H~~~ 56 (351)
..+|++|++|.|.+|+ .|+|+|...
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 4689999999999999 599999865
No 71
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.50 E-value=9.6e-08 Score=84.85 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=51.8
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce--eecCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--vips~~w~~ 269 (351)
..+..|+||++ ++.+| .++ .|||+||..||..|..... .+||+||.++.. ++|+
T Consensus 104 p~~f~CPI~~e-lm~DP-------V~~-~~Ghtfer~~I~~~l~~~~----------~tcP~t~~~l~~~~L~pN----- 159 (179)
T 2f42_A 104 PDYLCGKISFE-LMREP-------CIT-PSGITYDRKDIEEHLQRVG----------HFDPVTRSPLTQDQLIPN----- 159 (179)
T ss_dssp CGGGBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCGGGCEEC-----
T ss_pred cHhhcccCccc-cCCCC-------eEC-CCCCEECHHHHHHHHHhCC----------CCCCCCcCCCChhhCcch-----
Confidence 46689999999 57777 566 5999999999999997642 279999998753 4444
Q ss_pred CchhHHHHHHHHHhh
Q 018703 270 TPEEKQEIIDSYKSK 284 (351)
Q Consensus 270 ~~~ek~~li~~yk~~ 284 (351)
..-..+|+.|+..
T Consensus 160 --~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 160 --LAMKEVIDAFIQE 172 (179)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3456788888754
No 72
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=5.9e-08 Score=75.14 Aligned_cols=54 Identities=22% Similarity=0.484 Sum_probs=40.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCC-----CcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~-----H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
.+++.+|.||++.+.+. .. -+++ |+ |.|+.+||.+|...+. ..+||+||..+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~-----~~-l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDE-----SP-LITP-CHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSS-----SC-EECS-SSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCC-----Ce-eEec-cccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeeec
Confidence 45568899999874321 22 2554 86 9999999999998753 2599999998864
No 73
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.4e-08 Score=79.47 Aligned_cols=26 Identities=31% Similarity=0.829 Sum_probs=23.4
Q ss_pred CCCCCCccCCCCCCCCC-CCcCCCCCC
Q 018703 31 PNNICTYYQKGFCSYGS-RCRYEHVKP 56 (351)
Q Consensus 31 ~~~~C~~fl~G~C~~G~-~C~y~H~~~ 56 (351)
+..+|++|++|.|..|+ .|+|+|...
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 35799999999999999 799999875
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=4.4e-08 Score=77.47 Aligned_cols=58 Identities=22% Similarity=0.554 Sum_probs=39.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC--ccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLS 258 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~~ 258 (351)
++..+|+||++.+. .+ ....|.+|+|.||.+||++|...+...+ ......||. ||..+
T Consensus 3 ~~~~~C~IC~~~~~-~~-----~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYP-VE-----QMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCB-GG-----GEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccc-cc-----cceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCCC
Confidence 46789999999743 22 2233457999999999999887542111 012358999 99873
No 75
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6.4e-08 Score=73.47 Aligned_cols=47 Identities=28% Similarity=0.663 Sum_probs=35.5
Q ss_pred cCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
++.+|.||++. +.+| .++ .|+|. ||..||.++ ..||+||..+..++.
T Consensus 24 ~~~~C~IC~~~-~~~~-------~~~-pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 24 EEKLCKICMDR-NIAI-------VFV-PCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQK 71 (75)
T ss_dssp HHHSCSSSCSS-CCCB-------CCS-SSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCCB
T ss_pred CCCCCCcCCCC-CCCE-------EEe-cCCCHHHHHHHhhCC---------------CCCccCCceecCcEE
Confidence 45789999996 3333 445 59999 999999532 489999999876543
No 76
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.45 E-value=7.5e-08 Score=84.02 Aligned_cols=51 Identities=25% Similarity=0.572 Sum_probs=40.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
..++..|+||++. +.+| .++ .|+|+||..||.+|...+. .+||+||..+..
T Consensus 15 ~~~~~~C~IC~~~-~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMA-LREA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChh-hcCc-------EEC-CCCCHHHHHHHHHHHHhCC----------CCCCCCccCcch
Confidence 4567899999995 5555 344 6999999999999997652 389999998753
No 77
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.9e-07 Score=86.12 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=49.4
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC--cccccce--eecCcc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLSYF--VIPSVI 266 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~~~~--vips~~ 266 (351)
...+..|+||++. +..| .++..|+|+||..||.+|..... ..+||+ ||..+.. ++|+.
T Consensus 178 ~~~el~CPIcl~~-f~DP-------Vts~~CGHsFcR~cI~~~~~~~~---------~~~CPvtGCr~~l~~~dL~pN~- 239 (267)
T 3htk_C 178 GKIELTCPITCKP-YEAP-------LISRKCNHVFDRDGIQNYLQGYT---------TRDCPQAACSQVVSMRDFVRDP- 239 (267)
T ss_dssp SBCCSBCTTTSSB-CSSE-------EEESSSCCEEEHHHHHHHSTTCS---------CEECSGGGCSCEECGGGEEECH-
T ss_pred CceeeECcCccCc-ccCC-------eeeCCCCCcccHHHHHHHHHhCC---------CCCCCcccccCcCchhhCCcCH-
Confidence 4567899999995 6677 45557999999999999986432 258999 9997642 44442
Q ss_pred cccCchhHHHHHHHHHhh
Q 018703 267 WYYTPEEKQEIIDSYKSK 284 (351)
Q Consensus 267 w~~~~~ek~~li~~yk~~ 284 (351)
.-..+|+.++.+
T Consensus 240 ------~L~~lve~~k~r 251 (267)
T 3htk_C 240 ------IMELRCKIAKMK 251 (267)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH
Confidence 334555555543
No 78
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=3.4e-07 Score=69.92 Aligned_cols=55 Identities=18% Similarity=0.473 Sum_probs=41.8
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
...+|.||.+.|... . .-+.|+|.|...||.+|.+.++ ..+||+||....+-+|.
T Consensus 14 ~i~~C~IC~~~i~~g----~----~C~~C~h~fH~~Ci~kWl~~~~---------~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 14 AVKICNICHSLLIQG----Q----SCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSCBCSSSCCBCSSS----E----ECSSSCCEECHHHHHHHSTTCS---------SCCCTTTCSCCCSCCCC
T ss_pred CCCcCcchhhHcccC----C----ccCCCCchhhHHHHHHHHHhcC---------CCCCCCCcCcCCCCCCC
Confidence 347899999987632 1 1237999999999999997653 15899999988765554
No 79
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.34 E-value=1.2e-07 Score=72.95 Aligned_cols=48 Identities=27% Similarity=0.713 Sum_probs=37.3
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
.++.+|.||++... ++ .++ .|+|. ||..|+..|. .||+||..+..++.
T Consensus 16 ~~~~~C~IC~~~~~-~~-------v~~-pCgH~~~C~~C~~~~~---------------~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 16 KEAMLCMVCCEEEI-NS-------TFC-PCGHTVCCESCAAQLQ---------------SCPVCRSRVEHVQH 64 (79)
T ss_dssp HHHTBCTTTSSSBC-CE-------EEE-TTCBCCBCHHHHTTCS---------------BCTTTCCBCCEEEE
T ss_pred CCCCEeEEeCcccC-cE-------EEE-CCCCHHHHHHHHHhcC---------------cCCCCCchhhCeEE
Confidence 34578999999633 22 455 59999 9999998762 79999999987654
No 80
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.27 E-value=5.1e-07 Score=70.43 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=23.2
Q ss_pred CCCCCCccCCCCCCCCC-CCcCCCCCC
Q 018703 31 PNNICTYYQKGFCSYGS-RCRYEHVKP 56 (351)
Q Consensus 31 ~~~~C~~fl~G~C~~G~-~C~y~H~~~ 56 (351)
+..+|++|++|.|..|+ .|+|+|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 35799999999999997 999999865
No 81
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.25 E-value=5.4e-07 Score=71.19 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCC-CCcCCCCCC
Q 018703 18 GEHCEFSHDWKDPPNNICTYYQKGFCSYGS-RCRYEHVKP 56 (351)
Q Consensus 18 G~~C~f~H~~~~~~~~~C~~fl~G~C~~G~-~C~y~H~~~ 56 (351)
|..+.+.++... +..+|++|++|.|..|+ .|+|+|...
T Consensus 4 ~~~~~~~~~~~~-~~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 4 GSSGPVRDTKWL-TLEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp CCCSCCCSCSSS-EECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred cccccccCCCcc-hhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 556666664332 36799999999999998 999999865
No 82
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=8.9e-07 Score=66.18 Aligned_cols=50 Identities=26% Similarity=0.704 Sum_probs=37.6
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
.+.++.+|.|||+...+ + .+| .|+|. ||..|+.. . +.||+||..+..++.
T Consensus 11 ~~~~~~~C~IC~~~~~~-~-------v~~-pCgH~~~C~~C~~~----~-----------~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN-W-------VLL-PCRHTCLCDGCVKY----F-----------QQCPMCRQFVQESFA 61 (68)
T ss_dssp SCCCSSCCSSSSSSCCC-C-------EET-TTTBCCSCTTHHHH----C-----------SSCTTTCCCCCCEEC
T ss_pred cCCCCCCCCCcCcCCCC-E-------EEE-CCCChhhhHHHHhc----C-----------CCCCCCCcchhceEE
Confidence 34567899999996322 1 445 59999 99999983 1 489999999886554
No 83
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.08 E-value=1.7e-06 Score=69.25 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=37.0
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccccee
Q 018703 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (351)
Q Consensus 197 C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (351)
|.+|-=.|. .||-+..|.|+||++|+..|.+.++ ++||+||.++..|
T Consensus 4 C~~C~~Pi~--------iygRmIPCkHvFCydCa~~~~~~~~----------k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 4 CDKCGLPIK--------VYGRMIPCKHVFCYDCAILHEKKGD----------KMCPGCSDPVQRI 50 (101)
T ss_dssp CTTTCSBCS--------EEEEEETTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCSEE
T ss_pred cCccCCCeE--------EEeeeccccccHHHHHHHHHHhccC----------CCCcCcCCeeeee
Confidence 666666544 3466667999999999999997654 6999999999864
No 84
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.96 E-value=1.9e-06 Score=83.80 Aligned_cols=49 Identities=31% Similarity=0.731 Sum_probs=38.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCcccccceeec
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vip 263 (351)
..++..|.|||+.. ..| .+| .|+|. ||..||..| ..||+||.++..++.
T Consensus 292 l~~~~~C~IC~~~~-~~~-------v~l-pCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 292 LQEERTCKVCMDKE-VSV-------VFI-PCGHLVVCQECAPSL---------------RKCPICRGIIKGTVR 341 (345)
T ss_dssp HHTTCBCTTTSSSB-CCE-------EEE-TTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEE
T ss_pred CcCCCCCCccCCcC-Cce-------EEc-CCCChhHhHHHHhcC---------------CcCCCCCCCccCeEE
Confidence 34678999999964 333 456 59999 999999988 189999999886654
No 85
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.91 E-value=1.3e-05 Score=73.05 Aligned_cols=49 Identities=35% Similarity=0.731 Sum_probs=36.6
Q ss_pred ccccccccccC----CCCCCCCCCCCCCC-------------------------CC-----CCCCCccCCC-----CCCC
Q 018703 5 VLCKFFAHGAC----LKGEHCEFSHDWKD-------------------------PP-----NNICTYYQKG-----FCSY 45 (351)
Q Consensus 5 ~~Cr~f~~G~C----~~G~~C~f~H~~~~-------------------------~~-----~~~C~~fl~G-----~C~~ 45 (351)
-+||||+-|.| ..+..|+|+||+.+ ++ ..+|.+| +| .|.+
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~ 168 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ 168 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred eechhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence 47999999999 34578999998753 12 3589999 74 7887
Q ss_pred CCCCcCCCC
Q 018703 46 GSRCRYEHV 54 (351)
Q Consensus 46 G~~C~y~H~ 54 (351)
++.|...|+
T Consensus 169 ~~~C~kLHI 177 (229)
T 3u9g_A 169 PQPCERLHI 177 (229)
T ss_dssp SSCCCSBCS
T ss_pred CCCCcceec
Confidence 777777664
No 86
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.86 E-value=4.1e-06 Score=81.02 Aligned_cols=66 Identities=15% Similarity=0.388 Sum_probs=42.3
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
...+|+||++.+.+.....++. --.+.|+|.|...||.+|..+.......-+.+..+||.||.+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~-C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVS-CDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBC-CSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCcccc-ccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4468999999876521100111 11347999999999999997532111112345679999999754
No 87
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.83 E-value=8.4e-06 Score=59.66 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=41.0
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc--eeecC
Q 018703 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (351)
Q Consensus 194 ~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~vips 264 (351)
...|+|+++ ++++| .+++.++|+|+..||.+|.... .+||+.+.+.. -+||.
T Consensus 3 ~~~CpIs~~-~m~dP-------V~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGK-VPRRP-------VLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCS-CCSSE-------EEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCC-CCCCC-------EEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence 467999999 46666 6665799999999999999854 36999999875 35554
No 88
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.81 E-value=1.4e-05 Score=58.32 Aligned_cols=53 Identities=21% Similarity=0.463 Sum_probs=38.3
Q ss_pred cccCccccccccccccCCcccccceeecC-CCCC---cCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS-ECDH---PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~-~C~H---~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
.+++..|-||++.. +. .+ ++| +|.| .|..+||.+|...+. ..+||+||..+.+
T Consensus 3 ~~~~~~CrIC~~~~-~~------~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL-GN------ER-FRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC-SC------CC-CCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC-CC------ce-ecCcCCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCeeec
Confidence 45678899999962 21 12 454 3445 899999999998653 1599999998753
No 89
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=49.31 Aligned_cols=26 Identities=38% Similarity=0.838 Sum_probs=23.0
Q ss_pred CCccCchhhcCCCCCCCCCcccCCCC
Q 018703 130 DRSICSFAAAGNCPRGEKCPHIHGDT 155 (351)
Q Consensus 130 ~~~~C~~~~~G~C~~G~~C~~~Hg~~ 155 (351)
+..+|..|..|.|++|++|.|+||..
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHH
Confidence 45899877999999999999999964
No 90
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.56 E-value=0.00089 Score=60.93 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=39.5
Q ss_pred ccccccccc-----ccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcCCCCCCC
Q 018703 4 RVLCKFFAH-----GACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (351)
Q Consensus 4 ~~~Cr~f~~-----G~C~~G~~C~f~H~~~~~~~~~C~~fl~G~C~~G~~C~y~H~~~~ 57 (351)
..+|.+| + |.|+.++.|...| ||++|++|.|.+ ..|+.+|....
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH--------IC~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLH--------ICEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBC--------SCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred chHHHHh-CCCCCCCcCCCCCCCccee--------ccchhhcCCcCC-CCccCccCccC
Confidence 3689999 6 5999999999999 999999999999 89999999753
No 91
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.00084 Score=50.17 Aligned_cols=26 Identities=31% Similarity=0.811 Sum_probs=17.6
Q ss_pred CCCCCccCCCCCCCCCCCcCCCCCCC
Q 018703 32 NNICTYYQKGFCSYGSRCRYEHVKPS 57 (351)
Q Consensus 32 ~~~C~~fl~G~C~~G~~C~y~H~~~~ 57 (351)
..+|+.|++|.|.||++|.|+|....
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred cccCcccCcCCCCCCCccCCcCCHHH
Confidence 36777777777777777777776543
No 92
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.93 E-value=0.013 Score=53.88 Aligned_cols=54 Identities=20% Similarity=0.522 Sum_probs=42.0
Q ss_pred cCccccccccccccCCcccccceee-cCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecC
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGL-LSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgi-l~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips 264 (351)
.-..|.||.+.|.. |+ =++|+|.|...|+.+|.+... ...||.|+.....-+|.
T Consensus 179 ~i~~C~iC~~iv~~---------g~~C~~C~~~~H~~C~~~~~~~~~---------~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQ---------GQSCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSS---------CEECSSSCCEECHHHHHHHTTTCS---------SCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhC---------CcccCccChHHHHHHHHHHHHhCC---------CCCCCCCCCCCCCCCCC
Confidence 46789999998763 33 235999999999999987543 25899999987766665
No 93
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.19 E-value=0.0062 Score=47.96 Aligned_cols=35 Identities=14% Similarity=0.512 Sum_probs=26.0
Q ss_pred cCccccccccccccCCcccccceee-cCCCCCcCcHHHHHH-Hh
Q 018703 193 QEIECSVCLDRVLSKPTAAERKFGL-LSECDHPFCISCIRN-WR 234 (351)
Q Consensus 193 ~~~~C~IC~e~i~~k~~~~~~~fgi-l~~C~H~FC~~CI~~-W~ 234 (351)
+++.|.||++.+..+| .. =..|+|.||..||+. |.
T Consensus 2 ee~~C~~C~~~~~~~a-------v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA-------VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC-------CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc-------eEECCcCChHHhHHHCHHHhc
Confidence 5689999998544443 22 036999999999998 54
No 94
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.62 E-value=0.027 Score=39.10 Aligned_cols=29 Identities=45% Similarity=0.926 Sum_probs=24.8
Q ss_pred CCCccC-chhhcCCCCCCCCCcccCCCCCC
Q 018703 129 ADRSIC-SFAAAGNCPRGEKCPHIHGDTCP 157 (351)
Q Consensus 129 ~~~~~C-~~~~~G~C~~G~~C~~~Hg~~c~ 157 (351)
....+| .|++-|+|++|.+|++.|....+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 456889 79999999999999999987644
No 95
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.39 E-value=0.011 Score=41.06 Aligned_cols=25 Identities=40% Similarity=0.729 Sum_probs=12.2
Q ss_pred ccccccc-ccccCCCCCCCCCCCCCC
Q 018703 4 RVLCKFF-AHGACLKGEHCEFSHDWK 28 (351)
Q Consensus 4 ~~~Cr~f-~~G~C~~G~~C~f~H~~~ 28 (351)
+.+|.-| ..|-|..|.+|+++||.+
T Consensus 20 ~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp SCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cchhhhccccccCCCCCCCCccccCC
Confidence 3455433 235555555555555543
No 96
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.69 E-value=0.028 Score=51.72 Aligned_cols=24 Identities=42% Similarity=0.987 Sum_probs=14.7
Q ss_pred ccccccccccCCCCCCCCCCCCCC
Q 018703 5 VLCKFFAHGACLKGEHCEFSHDWK 28 (351)
Q Consensus 5 ~~Cr~f~~G~C~~G~~C~f~H~~~ 28 (351)
.+|-||..|.|++|++|+|+|.+.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred eEcCccccCCCCCCCCCCccCCCC
Confidence 356666666666666666666543
No 97
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.99 E-value=0.032 Score=51.33 Aligned_cols=27 Identities=33% Similarity=0.926 Sum_probs=24.3
Q ss_pred CCCCCccCCCCCCCCCCCcCCCCCCCC
Q 018703 32 NNICTYYQKGFCSYGSRCRYEHVKPSR 58 (351)
Q Consensus 32 ~~~C~~fl~G~C~~G~~C~y~H~~~~~ 58 (351)
..+|.||.+|.|.+|+.|+|.|..|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCCCH
T ss_pred CeEcCccccCCCCCCCCCCccCCCCCc
Confidence 458999999999999999999998853
No 98
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=89.06 E-value=0.067 Score=41.04 Aligned_cols=42 Identities=26% Similarity=0.644 Sum_probs=32.7
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcCCCC
Q 018703 4 RVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHV 54 (351)
Q Consensus 4 ~~~Cr~f~~G~C~~G~~C~f~H~~~~~~~~~C~~fl~G~C~~G~~C~y~H~ 54 (351)
...||||.+ |+. ..|+|.|... ...|+|+. .|.+ ..|.|.|.
T Consensus 9 ~e~CKf~~~--Ctn-~~C~f~Hp~~---~~~Cr~g~--~C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH--CTN-KRCKYRHARS---HIMCREGA--NCTR-IDCLFGHP 50 (80)
Confidence 467999984 887 9999999543 35799874 7885 77999995
No 99
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=81.91 E-value=0.31 Score=37.26 Aligned_cols=42 Identities=26% Similarity=0.599 Sum_probs=30.6
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcCCCCCC
Q 018703 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKP 56 (351)
Q Consensus 5 ~~Cr~f~~G~C~~G~~C~f~H~~~~~~~~~C~~fl~G~C~~G~~C~y~H~~~ 56 (351)
+.|+|++ .|++ .+|.|.|.. ...|+|+. .|.+ ..|.|.|...
T Consensus 32 ~~Cr~g~--~C~~-~~C~f~HP~----~~~Crf~~--~C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 32 IMCREGA--NCTR-IDCLFGHPI----NEDCRFGV--NCKN-IYCLFRHPPG 73 (80)
Confidence 4677775 4776 789999952 35798875 6775 7899999643
No 100
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.14 E-value=3.8 Score=31.83 Aligned_cols=57 Identities=23% Similarity=0.456 Sum_probs=45.5
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccce
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (351)
+....|.||-|.|--.. ....|..-..|+-.-|..|..-=|+... .+||+|.+.+..
T Consensus 14 ~~~qiCqiCGD~VG~~~--~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTV--EGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCS--SSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCC
T ss_pred cCCCccccccCccccCC--CCCEEEeeeccCChhhHHHHHHHHhccC----------ccccccCCcccc
Confidence 34578999999987654 4568888889999999999887665442 599999999864
No 101
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=63.33 E-value=2.4 Score=33.31 Aligned_cols=44 Identities=32% Similarity=0.647 Sum_probs=35.2
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (351)
..|-.|.-. .| |++.-.+|-+|+.|+..-.+.+ ..||+|..+.-
T Consensus 29 ~nCKsCWf~--~k--------~LV~C~dHYLCl~CLtlmL~~S-----------drCpIC~~pLP 72 (99)
T 2ko5_A 29 QFCKSCWFE--NK--------GLVECNNHYLCLNCLTLLLSVS-----------NRCPICKMPLP 72 (99)
T ss_dssp CCCCSSCSC--CS--------SEEECSSCEEEHHHHHHTCSSS-----------SEETTTTEECC
T ss_pred ccChhhccc--cC--------CeeeecchhhHHHHHHHHHhhc-----------cCCcccCCcCC
Confidence 458888864 22 7888889999999999988765 38999998764
No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=51.96 E-value=13 Score=30.61 Aligned_cols=51 Identities=20% Similarity=0.459 Sum_probs=32.2
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH------HhhhC-CCCCCccccccccCCCcccc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN------WRSSS-PTSGMDVNTALRACPICRKL 257 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~------W~~~~-~~~~~~~~~~~~~CP~CR~~ 257 (351)
...+..|.||.+- . ..-.=.+|-.+||.+||.. +.+.. ... .-.|++|+-.
T Consensus 54 Dg~~~~C~vC~dG--------G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~-------~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG--------G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENN-------QWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC--------S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTS-------CCCCTTTCCG
T ss_pred CCCCCcCeecCCC--------C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCC-------CeEcCCcCCH
Confidence 3455679999984 0 0112368999999999985 33321 111 2489999654
No 103
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.17 E-value=1.5 Score=33.13 Aligned_cols=16 Identities=25% Similarity=0.868 Sum_probs=14.8
Q ss_pred CCCCcCcHHHHHHHhh
Q 018703 220 ECDHPFCISCIRNWRS 235 (351)
Q Consensus 220 ~C~H~FC~~CI~~W~~ 235 (351)
+|++.||+.|-..|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999999976
No 104
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=46.44 E-value=39 Score=36.79 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=51.5
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc--eeecCccc
Q 018703 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIW 267 (351)
Q Consensus 190 ~~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~vips~~w 267 (351)
+..++..|+|=++ |+.+| .++++=+++|=...|.+|.... .+||.=|.+.. -++|+
T Consensus 887 ~iP~~F~cPIs~~-lM~DP-------VilpsG~~TydR~~I~~wl~~~-----------~tdP~Tr~~L~~~~liPN--- 944 (968)
T 3m62_A 887 DVPDEFLDPLMYT-IMKDP-------VILPASKMNIDRSTIKAHLLSD-----------STDPFNRMPLKLEDVTPN--- 944 (968)
T ss_dssp CSCGGGBCTTTCS-BCSSE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCGGGCEEC---
T ss_pred CCcHHhCCcchhh-HHhCC-------eEcCCCCEEECHHHHHHHHhcC-----------CCCCCCCCCCCccccccc---
Confidence 4455688999999 68888 7886444799999999999753 48999998875 35665
Q ss_pred ccCchhHHHHHHHHHhh
Q 018703 268 YYTPEEKQEIIDSYKSK 284 (351)
Q Consensus 268 ~~~~~ek~~li~~yk~~ 284 (351)
.+-+..|+.|.+.
T Consensus 945 ----~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 945 ----EELRQKILCFKKQ 957 (968)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 3455677777643
No 105
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=42.14 E-value=16 Score=26.35 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=34.5
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCccccc
Q 018703 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (351)
Q Consensus 192 s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (351)
..+..|.||.+. . ...+=..|...|.+.|+.-....... ..-.||.|+...
T Consensus 10 ~~~~~C~vC~~~--~-------~ll~Cd~C~~~~H~~Cl~P~l~~~P~-------g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG--T-------DVLRCTHCAAAFHWRCHFPAGTSRPG-------TGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC--T-------TCEECSSSCCEECHHHHCTTTCCCCS-------SSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC--C-------eEEECCCCCCceecccCCCccCcCCC-------CCEECccccCCC
Confidence 345779999863 1 23556789999999999766543321 124899998653
No 106
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=40.70 E-value=5.8 Score=35.88 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=0.0
Q ss_pred CCccCchhhcCCCCCCCCCcccCCCC
Q 018703 130 DRSICSFAAAGNCPRGEKCPHIHGDT 155 (351)
Q Consensus 130 ~~~~C~~~~~G~C~~G~~C~~~Hg~~ 155 (351)
+.+.|||.. .|.||.+|.|.|++-
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCcc
Confidence 457799965 599999999999865
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.79 E-value=42 Score=28.01 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=25.0
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHH
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNW 233 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W 233 (351)
...+..|.||.+- ...-.-..|--+||+.||..=
T Consensus 60 Dg~~d~C~vC~~G---------G~LlcCD~Cpr~Fh~~Cl~p~ 93 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---------GNLICCDFCHNAFCKKCILRN 93 (142)
T ss_dssp TSCBCSCSSSCCC---------SSEEECSSSCCEEEHHHHHHH
T ss_pred CCCCCeecccCCC---------CcEEeCCCCCCeeeHhhcCCC
Confidence 4456889999984 112345679999999999853
No 108
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.52 E-value=28 Score=29.77 Aligned_cols=68 Identities=15% Similarity=0.426 Sum_probs=40.2
Q ss_pred cccCccccccccccccCCcccccceeecC--CCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccc--eeecCcc
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS--ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVI 266 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~--~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~vips~~ 266 (351)
...+..|.||-+- ...-+=. +|...||.+||..+........+ .....-.|=+|.-..- .+.+-.-
T Consensus 76 DG~~~yC~wC~~G---------g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i-~~~d~W~Cy~C~P~~l~~ll~~R~d 145 (159)
T 3a1b_A 76 DGYQSYCTICCGG---------REVLMCGNNNCCRCFCVECVDLLVGPGAAQAA-IKEDPWNCYMCGHKGTYGLLRRRED 145 (159)
T ss_dssp TSSBSSCTTTSCC---------SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHH-HTSSSCCCTTTCSSCEETTEEBCTT
T ss_pred CCCcceeeEecCC---------CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHH-hccCCCEEEecCCccHHHHhhhhhh
Confidence 3456789999984 1112222 58899999999998865321100 0011236888876542 4555555
Q ss_pred cc
Q 018703 267 WY 268 (351)
Q Consensus 267 w~ 268 (351)
|.
T Consensus 146 w~ 147 (159)
T 3a1b_A 146 WP 147 (159)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 109
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.96 E-value=11 Score=29.75 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=26.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHh
Q 018703 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (351)
Q Consensus 191 ~s~~~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (351)
...+..|.||.+. -+. ..+..=..|...|.+.|+.-+.
T Consensus 4 ~~~~~~C~~C~~~-g~~-----~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSP-GDL-----LDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCC-CCT-----TTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCCcCCCCC-CCC-----cCCeECCCCCCCcChHHhCCcc
Confidence 3567889999885 111 1223447899999999997654
No 110
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.98 E-value=4 Score=30.98 Aligned_cols=20 Identities=30% Similarity=1.079 Sum_probs=15.9
Q ss_pred cCCCCCcCcHHHHHHHhhhC
Q 018703 218 LSECDHPFCISCIRNWRSSS 237 (351)
Q Consensus 218 l~~C~H~FC~~CI~~W~~~~ 237 (351)
=+.|++.||+.|-..|...+
T Consensus 46 C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 46 CPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CTTTCCEECSSSCSBCCTTT
T ss_pred eCCCCCccccccCCchhhcC
Confidence 34699999999999995444
No 111
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=29.77 E-value=19 Score=25.67 Aligned_cols=30 Identities=20% Similarity=0.617 Sum_probs=21.1
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHH
Q 018703 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCI 230 (351)
Q Consensus 195 ~~C~IC~e~i~~k~~~~~~~fgil~~C~H~FC~~CI 230 (351)
..|--|...+.++. +| .=+.|++.||++|=
T Consensus 16 ~~C~~C~~~~~~~~-----~y-~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQH-----VY-VCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSE-----EE-CCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCc-----cE-ECCccCcCcccchh
Confidence 45888888754321 23 35689999999994
No 112
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.01 E-value=54 Score=26.96 Aligned_cols=67 Identities=15% Similarity=0.386 Sum_probs=41.6
Q ss_pred ccCcccccccccc-ccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCcccccceeecCcccccC
Q 018703 192 SQEIECSVCLDRV-LSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (351)
Q Consensus 192 s~~~~C~IC~e~i-~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~vips~~w~~~ 270 (351)
..+..|.||...+ +-.. +-.+=.+|.|.+|-+|-..-... .++..-.|=+|+..-...+-+..|+-+
T Consensus 53 ~~~~~C~~C~~~~g~l~~-----~g~~C~~C~~~VC~~C~~~~~~~-------~~~~~W~C~vC~k~rel~~kSG~Wf~~ 120 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGS-----ASVVCEDCKKNVCTKCGVETSNN-------RPHPVWLCKICLEQREVWKRSGAWFFK 120 (134)
T ss_dssp CSSSBCSSSCCBCSTTSC-----CEEECTTTCCEEETTSEEECCCS-------SSSCCEEEHHHHHHHHHHHHTSHHHHT
T ss_pred CCCccccccCCCcccccC-----CCCCCCCCCcccccccCCccCCC-------CCccceechhhHHHHHHHHhhhHHHHh
Confidence 4567899999975 2211 11345579999999884321111 112345788888877777777777643
No 113
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.94 E-value=28 Score=27.54 Aligned_cols=14 Identities=36% Similarity=1.113 Sum_probs=12.2
Q ss_pred cCcHHHHHHHhhhC
Q 018703 224 PFCISCIRNWRSSS 237 (351)
Q Consensus 224 ~FC~~CI~~W~~~~ 237 (351)
-||..|+.+|....
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999864
No 114
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=24.66 E-value=28 Score=27.44 Aligned_cols=14 Identities=29% Similarity=1.016 Sum_probs=12.1
Q ss_pred cCcHHHHHHHhhhC
Q 018703 224 PFCISCIRNWRSSS 237 (351)
Q Consensus 224 ~FC~~CI~~W~~~~ 237 (351)
-||..|+.+|....
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999853
No 115
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.06 E-value=22 Score=22.50 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=10.7
Q ss_pred ccCccccccccccc
Q 018703 192 SQEIECSVCLDRVL 205 (351)
Q Consensus 192 s~~~~C~IC~e~i~ 205 (351)
++...|+|||..+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 45688999998643
Done!