BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018704
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 179/310 (57%), Gaps = 31/310 (10%)
Query: 52 SGLGPT----------KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101
SG GPT + ++KP V++LGSGW +K IDT Y+V +SPR++ +FTP
Sbjct: 22 SGAGPTSFKTMKVIDPQHSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTP 81
Query: 102 LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRT 161
LL S VGT++ +S+ EPI A+ ++ ++ + I+ D + V ++++ +
Sbjct: 82 LLPSAPVGTVDEKSIIEPIVNF--ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQL 139
Query: 162 LEPWKF---------KISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212
+P +I YD L+ A+GAE +TFGI GV + FL+E+ ++ EIRR
Sbjct: 140 YQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAA 199
Query: 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272
NL +++ + E+ RLL VVVGGGPTGVE +GEL D++ +D+R+ + + + + L
Sbjct: 200 NLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHL 259
Query: 273 IEANEI-LSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILN----DG--TE--V 322
+EA I L+ F+ +L YA + L + +++ +R V V+ ++L+ DG TE +
Sbjct: 260 VEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETI 319
Query: 323 PYGLLVWSTG 332
PYG L+W+TG
Sbjct: 320 PYGTLIWATG 329
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 173/292 (59%), Gaps = 21/292 (7%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
++KP V++LGSGW +K IDT Y+V +SPR++ +FTPLL S VGT++ +S+ EP
Sbjct: 9 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEP 68
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKF---------KIS 170
I A+ ++ ++ + I+ D + V ++++ + +P +I
Sbjct: 69 IVNF--ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIK 126
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
YD L+ A+GAE +TFGI GV + FL+E+ ++ EIRR NL +++ + E+ RL
Sbjct: 127 YDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRL 186
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSFDDRLRHY 289
L VVVGGGPTGVE +GEL D++ +D+R+ + + + + L+EA I L+ F+ +L Y
Sbjct: 187 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSY 246
Query: 290 ATTQLSKSGVRL-VRGIVKDVDSQKLILN----DG--TE--VPYGLLVWSTG 332
A + L + +++ +R V V+ ++L+ DG TE +PYG L+W+TG
Sbjct: 247 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATG 298
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN 147
+ +S R + FTP +G +F ++ P+A + P + E F ID D
Sbjct: 30 ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE----FINEKAESIDPDA 85
Query: 148 HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIR 207
+ V ++ KI YD LVIA G + FG G +EN+T + HA E +
Sbjct: 86 NTVTTQSGK-----------KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQ 133
Query: 208 RKLLL------NLMLSDVPGIS 223
+KL +++ +PG+S
Sbjct: 134 KKLQELYANPGPVVIGAIPGVS 155
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN 147
+ +S R + FTP +G +F ++ P+A + P + E F ID D
Sbjct: 30 ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE----FINEKAESIDPDA 85
Query: 148 HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIR 207
+ V ++ KI YD LVIA G + FG G +EN+T + HA E +
Sbjct: 86 NTVTTQSGK-----------KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQ 133
Query: 208 RKLLL------NLMLSDVPGIS 223
+KL +++ +PG+S
Sbjct: 134 KKLQELYANPGPVVIGAIPGVS 155
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 121/299 (40%), Gaps = 61/299 (20%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N VV++G+G AG + G+ S ++ + V L L ++ AE
Sbjct: 2 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAES 61
Query: 120 I-ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
+ R A + + + I+ D + + + R L+ YD+LV+A
Sbjct: 62 LYLRTPDAYAAQNIQLLGGTQVTAINRDRQ----QVILSDGRALD-------YDRLVLAT 110
Query: 179 GAEASTF----GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234
G G G N +LR + A+ IRR+L+ + +RL V
Sbjct: 111 GGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD--------------NRL---V 153
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL--------SSFDDR 285
V+GGG G+E + + +K +HVTL++ A +L S+F +
Sbjct: 154 VIGGGYIGLEVAA--------------TAIKANMHVTLLDTAARVLERVTAPPVSAFYEH 199
Query: 286 LRHYATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPSTLVKS 341
L A + ++G + V G D QK ++ DGT +P L++ G+ P+ + S
Sbjct: 200 LHREAGVDI-RTGTQ-VCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 121/299 (40%), Gaps = 61/299 (20%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N VV++G+G AG + G+ S ++ + V L L ++ AE
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAES 60
Query: 120 I-ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
+ R A + + + I+ D + + + R L+ YD+LV+A
Sbjct: 61 LYLRTPDAYAAQNIQLLGGTQVTAINRDRQ----QVILSDGRALD-------YDRLVLAT 109
Query: 179 GAEASTF----GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234
G G G N +LR + A+ IRR+L+ + +RL V
Sbjct: 110 GGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD--------------NRL---V 152
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL--------SSFDDR 285
V+GGG G+E + + +K +HVTL++ A +L S+F +
Sbjct: 153 VIGGGYIGLEVAA--------------TAIKANMHVTLLDTAARVLERVTAPPVSAFYEH 198
Query: 286 LRHYATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPSTLVKS 341
L A + ++G + V G D QK ++ DGT +P L++ G+ P+ + S
Sbjct: 199 LHREAGVDI-RTGTQ-VCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 255
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 19/126 (15%)
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 283
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 284 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 338 LVKSLD 343
LD
Sbjct: 312 QALQLD 317
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 19/126 (15%)
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 283
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 284 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 338 LVKSLD 343
LD
Sbjct: 312 QALQLD 317
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 47/219 (21%)
Query: 143 IDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREV 200
ID H V E + T E RTL+ YDKLV+ALG++A+ + G+ T + +
Sbjct: 92 IDRAAHTVEIENLRTGERRTLK-------YDKLVLALGSKANRPPVEGMDLAGVTPVTNL 144
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260
A+ ++ IS E S+ V+VGGG G+E + L+D
Sbjct: 145 DEAEFVQH------------AISAGEVSK---AVIVGGGFIGLEMAVSLADMW------- 182
Query: 261 YSHVKDYIHVTLIE-ANEILSSFDDR-----LRH--YATTQLSKSGVRLVRGIVKDVDSQ 312
I T++E A++I+ F + LRH + +G ++VR + +
Sbjct: 183 ------GIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVR-LEGENGKV 235
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG 350
++ D + L++ + GV P+T L + L P G
Sbjct: 236 ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRG 274
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
QL+ +G++++ + + D S+ + G ++ + L++ + G P T
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT 291
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 191 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 239
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
QL+ +G++++ + + D S+ + G ++ + L++ + G P T
Sbjct: 240 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT 290
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
QL+ +G++++ + + D S+ + G ++ + L++ + G P T
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT 291
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 193 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 241
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
QL+ +G++++ + + D S+ + G ++ + L++ + G P T
Sbjct: 242 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT 292
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VV+GGG G+E ++F + VT++E A EILS F+ ++
Sbjct: 174 VVIGGGYIGIELGTAYANFGTK--------------VTILEGAGEILSGFEKQMAAIIKK 219
Query: 293 QLSKSGVRLV-RGIVKDVDSQKLILNDGTEVPY 324
+L K GV +V + K + ++ DG V Y
Sbjct: 220 RLKKKGVEVVTNALAKGAEERE----DGVTVTY 248
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 42/215 (19%)
Query: 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-NAT 195
LS I+ + + + VT + +YD L+++ GA+ I G++E A
Sbjct: 113 LSEVVKINKEEKTITIKNVTTN------ETYNEAYDVLILSPGAKPIVPSIPGIEEAKAL 166
Query: 196 F-LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254
F LR V I+ + +E+K R H V+GGG GVE +
Sbjct: 167 FTLRNVPDTDRIKAYI-------------DEKKPR--HATVIGGGFIGVEX--------V 203
Query: 255 RDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRLV--RGIVKDVDS 311
++R+R I VTL+E AN++ D Y V LV G+ ++
Sbjct: 204 ENLRER------GIEVTLVEXANQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDALEEN 257
Query: 312 QKLI-LNDGTEVPYGLLVWSTGVGP-STLVKSLDL 344
++ L G+ + L+ + GV P S+L K L
Sbjct: 258 GAVVRLKSGSVIQTDXLILAIGVQPESSLAKGAGL 292
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 102/272 (37%), Gaps = 28/272 (10%)
Query: 64 RVVVLGSGWAG---CRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+V+VLG + +K + S DV ++ F P L +G R V E
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGV---RDVDELK 59
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
+ A+ E G F ID + +V+ + E YD +++ +GA
Sbjct: 60 VDLSEALP-EKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEE-------YDYVIVGIGA 111
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLL----NLMLSDVPGIS-EEEKSRLLHCVV 235
+T + G + + E A ++R KL N+ + P K ++ V
Sbjct: 112 HLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFV 171
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVK---DYIHVTLIEANEILSSFDDRLRHYATT 292
+ + E F M + Y K D +HVT+ E LS R +
Sbjct: 172 -----PNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVAS 226
Query: 293 QLSKSGVRLVRGI-VKDVDSQKLILNDGTEVP 323
++ G++LV +K++ +++ G +P
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVDEKGNTIP 258
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 290
H VVVGGG G+E ++ K V+++EA E IL ++D L
Sbjct: 173 HLVVVGGGYIGLELG--------------IAYRKLGAQVSVVEARERILPTYDSELTAPV 218
Query: 291 TTQLSKSGVRLVRG-IVKDVDSQKLILNDG 319
L K G+ L G V+ ++ L+ NDG
Sbjct: 219 AESLKKLGIALHLGHSVEGYENGCLLANDG 248
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 308 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 308 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 26/170 (15%)
Query: 169 ISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEK 227
I Y LV+A GA + + +LR + ++ +R+++ ++K
Sbjct: 97 IEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRM-------------PDKK 143
Query: 228 SRLLHCVVVGGGPTGVEFSGEL-SDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL 286
H VV+G G G+EF+ + + DV + V + + EI S F D
Sbjct: 144 ----HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV-----MARVVTPEISSYFHD-- 192
Query: 287 RHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336
RH GVR + ++L+DG +P L+V GV P+
Sbjct: 193 RHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPN 242
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 251 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFXIRGALNAVR 65
Query: 311 S 311
S
Sbjct: 66 S 66
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 251 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVR 65
Query: 311 S 311
S
Sbjct: 66 S 66
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 37/175 (21%)
Query: 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 229
+YDKL++ G++ + I G+ + +L + ++ +KL EE +
Sbjct: 105 AYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDA---KKLF-------------EEAPK 148
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLR 287
++G G G E + S+ Q Y +V LI+ +E + FD
Sbjct: 149 AKTITIIGSGYIGAELAEAYSN-------QNY-------NVNLIDGHERVLYKYFDKEFT 194
Query: 288 HYATTQLSKSGVRLVRG----IVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPST 337
GV LV G ++VD + + DG E+ + + G P+T
Sbjct: 195 DILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNT 249
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 31/147 (21%)
Query: 160 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSD 218
R L+ +++ SYD L+++ GA I GV T LR + I + + +N
Sbjct: 95 RLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMN----- 149
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 277
+ H VVGGG G+E L H+ I TL+E A++
Sbjct: 150 ----------NVEHATVVGGGFIGLEMMESL------------HHLG--IKTTLLELADQ 185
Query: 278 ILSSFDDRLRHYATTQLSKSGVRLVRG 304
+++ D + +A + GV L G
Sbjct: 186 VMTPVDREMAGFAHQAIRDQGVDLRLG 212
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 316 LNDGTEVPYGLLVWSTGVGPSTL 338
L DG+ + YG L+W+TG P L
Sbjct: 100 LGDGSAIEYGKLIWATGGDPRRL 122
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 34/144 (23%)
Query: 212 LNLMLSDVPGI----SEEEKSRLL--------HCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
L+ + +D+ G+ ++E+ RL+ + VV+GGG G+E + L+ F
Sbjct: 122 LSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKF------- 174
Query: 260 RYSHVKDYIHVTLIEA-NEILSSF-DDRLRHYATTQLSKSGVRLVRGIVKDV---DSQKL 314
++VTL+EA +L+ + L + + GV L G D D K+
Sbjct: 175 -------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV 227
Query: 315 I---LNDGTEVPYGLLVWSTGVGP 335
+ DG+ +P +++ G+ P
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVP 251
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 36/76 (47%)
Query: 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248
G+ + ++E + +EI K+ L+ ++E+E +C+ + P+G G
Sbjct: 13 GLVPRGSHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGH 72
Query: 249 LSDFIMRDVRQRYSHV 264
+ ++ + DV RY +
Sbjct: 73 VRNYTIGDVIARYQRM 88
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
++G G G+E +G L F + V +E + +L FD L
Sbjct: 169 VAIIGAGYIGIELAGLLRSF------------GSEVTVVALE-DRLLFQFDPLLSATLAE 215
Query: 293 QLSKSGVR-----LVRGIVKDVDSQKLILNDGTEVP-YGLLVWSTGVGPST 337
+ G+ V + +D L+ DGT + + ++W+ G P+T
Sbjct: 216 NMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 30/115 (26%)
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-------ANEILSSF--- 282
V+VG GP G E + +LS Q Y VT+I+ + +LS +
Sbjct: 11 VVIVGNGPGGFELAKQLS--------QTY-------EVTVIDKEPVPYYSKPMLSHYIAG 55
Query: 283 ---DDRLRHYATTQLSKSGVRL-VRGIVKDVD-SQKLILNDGTEVPYGLLVWSTG 332
+RL Y+ K G+ + + K +D +K+++ + EVPY LV +TG
Sbjct: 56 FIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATG 110
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 26/152 (17%)
Query: 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIAR 122
+VV++G+G G L K + + Y+V + ++ P+L+ G + P R
Sbjct: 10 KVVIVGNGPGGFELAKQLSQT-YEVTVIDKEPVPYYSKPMLSHYIAGFI-------PRNR 61
Query: 123 IQPA---ISREPGSYFFLSHCAG-IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
+ P R+ G L+ A ID VV E K ++ YD LV+A
Sbjct: 62 LFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITE------------KGEVPYDTLVLAT 109
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKL 210
GA A I G KE LR + A I+ +
Sbjct: 110 GARAREPQIKG-KEYLLTLRTIFDADRIKESI 140
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-SFDDR--- 285
+ H V++G G G+ + E+ + + DY + +N + + +R
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ--FVPSNPWVGVGWKERDDI 58
Query: 286 ---LRHYATTQLSKSGVRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTG 332
+RHY + + G+ + + +D+ Q + L DG V Y L+ +TG
Sbjct: 59 AFPIRHY----VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATG 106
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-SFDDR--- 285
+ H V++G G G+ + E+ + + DY + +N + + +R
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ--FVPSNPWVGVGWKERDDI 58
Query: 286 ---LRHYATTQLSKSGVRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTG 332
+RHY + + G+ + + +D+ Q + L DG V Y L+ +TG
Sbjct: 59 AFPIRHY----VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATG 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,078,146
Number of Sequences: 62578
Number of extensions: 399682
Number of successful extensions: 1132
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 59
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)