Query 018704
Match_columns 351
No_of_seqs 201 out of 2426
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 2.5E-41 5.4E-46 300.8 22.4 288 58-350 51-344 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 3.7E-39 7.9E-44 294.5 28.3 272 61-351 2-279 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 2.4E-37 5.2E-42 292.9 31.6 280 60-351 8-296 (424)
4 PRK13512 coenzyme A disulfide 100.0 1.9E-32 4E-37 260.6 26.9 249 63-350 2-257 (438)
5 TIGR03169 Nterm_to_SelD pyridi 100.0 5.5E-32 1.2E-36 252.2 27.2 254 64-350 1-258 (364)
6 PRK14989 nitrite reductase sub 100.0 1.4E-30 3E-35 262.5 25.4 243 62-350 3-261 (847)
7 PRK09754 phenylpropionate diox 100.0 6.4E-30 1.4E-34 240.5 25.9 239 62-347 3-254 (396)
8 PRK09564 coenzyme A disulfide 100.0 7.1E-30 1.5E-34 244.1 25.9 249 64-350 2-262 (444)
9 PRK04965 NADH:flavorubredoxin 100.0 7.8E-30 1.7E-34 238.6 25.1 238 63-347 3-252 (377)
10 COG1249 Lpd Pyruvate/2-oxoglut 100.0 8.2E-30 1.8E-34 238.9 21.4 243 61-351 3-291 (454)
11 TIGR02374 nitri_red_nirB nitri 100.0 1.9E-29 4.1E-34 254.4 24.7 237 65-347 1-251 (785)
12 PRK06116 glutathione reductase 100.0 8.1E-29 1.8E-33 236.9 21.0 236 62-350 4-283 (450)
13 PRK08010 pyridine nucleotide-d 100.0 9.7E-29 2.1E-33 235.8 21.2 242 62-350 3-272 (441)
14 PRK07251 pyridine nucleotide-d 100.0 1.2E-28 2.7E-33 234.9 21.3 241 62-350 3-271 (438)
15 TIGR01421 gluta_reduc_1 glutat 100.0 1.2E-28 2.5E-33 235.1 20.6 236 62-350 2-283 (450)
16 PLN02507 glutathione reductase 100.0 1.4E-28 3.1E-33 236.8 21.1 244 60-350 23-318 (499)
17 TIGR01424 gluta_reduc_2 glutat 100.0 9.8E-29 2.1E-33 235.8 19.5 238 62-350 2-281 (446)
18 COG0492 TrxB Thioredoxin reduc 100.0 1.9E-28 4E-33 219.3 19.9 239 61-350 2-253 (305)
19 PRK05249 soluble pyridine nucl 100.0 4.2E-28 9.1E-33 232.8 22.7 244 61-350 4-290 (461)
20 PLN02546 glutathione reductase 100.0 8E-28 1.7E-32 232.9 23.4 239 60-350 77-368 (558)
21 PTZ00052 thioredoxin reductase 100.0 5.2E-28 1.1E-32 233.1 21.3 242 62-350 5-296 (499)
22 PRK14694 putative mercuric red 100.0 1.4E-27 3.1E-32 229.1 22.8 240 60-346 4-287 (468)
23 PRK06370 mercuric reductase; V 100.0 1.6E-27 3.5E-32 228.6 23.1 239 61-350 4-289 (463)
24 PRK10262 thioredoxin reductase 100.0 1.7E-27 3.8E-32 218.0 21.7 240 60-346 4-259 (321)
25 TIGR01423 trypano_reduc trypan 100.0 1.5E-27 3.3E-32 228.4 21.0 249 61-350 2-306 (486)
26 KOG0404 Thioredoxin reductase 100.0 3.8E-28 8.3E-33 199.0 14.3 242 62-350 8-270 (322)
27 TIGR01292 TRX_reduct thioredox 100.0 1.8E-27 3.9E-32 215.8 19.6 239 63-350 1-253 (300)
28 PRK06416 dihydrolipoamide dehy 100.0 2E-27 4.3E-32 228.2 20.5 242 61-350 3-289 (462)
29 TIGR01438 TGR thioredoxin and 100.0 2.2E-27 4.8E-32 227.7 20.2 240 62-348 2-295 (484)
30 PRK07845 flavoprotein disulfid 100.0 7.4E-27 1.6E-31 223.9 23.0 244 63-350 2-292 (466)
31 PRK13748 putative mercuric red 100.0 1.2E-26 2.6E-31 227.9 24.9 244 61-350 97-383 (561)
32 PRK06467 dihydrolipoamide dehy 100.0 3.3E-27 7.2E-32 226.4 19.5 242 62-350 4-292 (471)
33 TIGR02053 MerA mercuric reduct 100.0 4.1E-27 8.8E-32 226.0 19.9 238 63-350 1-284 (463)
34 KOG4716 Thioredoxin reductase 100.0 1.1E-27 2.5E-32 207.4 14.0 229 60-336 17-301 (503)
35 PRK07846 mycothione reductase; 100.0 1.6E-26 3.4E-31 220.4 22.3 236 63-350 2-280 (451)
36 PTZ00058 glutathione reductase 99.9 7.8E-27 1.7E-31 225.9 19.6 229 60-339 46-341 (561)
37 PLN02172 flavin-containing mon 99.9 6.2E-27 1.3E-31 222.4 17.9 233 61-343 9-297 (461)
38 PRK14727 putative mercuric red 99.9 5.7E-26 1.2E-30 218.5 23.9 244 61-350 15-301 (479)
39 TIGR01350 lipoamide_DH dihydro 99.9 4.8E-26 1.1E-30 218.6 22.8 240 63-350 2-287 (461)
40 TIGR01316 gltA glutamate synth 99.9 4.2E-27 9E-32 224.3 15.0 269 28-350 103-403 (449)
41 PRK06912 acoL dihydrolipoamide 99.9 2.9E-26 6.4E-31 219.5 20.9 240 64-350 2-286 (458)
42 PRK06115 dihydrolipoamide dehy 99.9 6.2E-26 1.3E-30 217.5 22.5 243 62-350 3-294 (466)
43 KOG0405 Pyridine nucleotide-di 99.9 1.3E-26 2.9E-31 201.5 16.1 243 61-350 19-305 (478)
44 PRK05976 dihydrolipoamide dehy 99.9 3.8E-26 8.3E-31 219.6 20.8 231 61-336 3-282 (472)
45 TIGR03140 AhpF alkyl hydropero 99.9 3.2E-26 7E-31 221.8 20.2 240 60-350 210-465 (515)
46 PRK06327 dihydrolipoamide dehy 99.9 3.7E-26 8.1E-31 219.6 20.1 243 62-350 4-302 (475)
47 PRK12831 putative oxidoreducta 99.9 9E-27 2E-31 222.4 15.1 271 27-350 110-413 (464)
48 PRK07818 dihydrolipoamide dehy 99.9 6.2E-26 1.4E-30 217.8 19.9 241 62-350 4-291 (466)
49 PRK06292 dihydrolipoamide dehy 99.9 6.7E-26 1.5E-30 217.5 19.2 238 61-350 2-286 (460)
50 KOG1336 Monodehydroascorbate/f 99.9 3.3E-25 7.2E-30 201.5 22.2 239 62-349 74-327 (478)
51 TIGR03385 CoA_CoA_reduc CoA-di 99.9 3.1E-25 6.7E-30 211.0 22.4 236 76-350 1-249 (427)
52 PRK15317 alkyl hydroperoxide r 99.9 1.6E-25 3.5E-30 217.1 19.9 236 60-350 209-464 (517)
53 TIGR03143 AhpF_homolog putativ 99.9 1.2E-25 2.6E-30 219.4 18.8 240 62-350 4-261 (555)
54 PRK09853 putative selenate red 99.9 3.7E-25 7.9E-30 222.3 20.4 276 14-350 495-795 (1019)
55 TIGR03452 mycothione_red mycot 99.9 1.6E-24 3.4E-29 206.9 22.7 237 62-350 2-283 (452)
56 PRK12779 putative bifunctional 99.9 6.9E-25 1.5E-29 223.3 19.3 242 61-350 305-579 (944)
57 PTZ00153 lipoamide dehydrogena 99.9 2.8E-24 6.1E-29 210.8 19.6 144 168-348 272-443 (659)
58 PF00743 FMO-like: Flavin-bind 99.9 3E-25 6.6E-30 213.5 12.4 240 63-345 2-343 (531)
59 PRK11749 dihydropyrimidine deh 99.9 1.5E-24 3.3E-29 207.6 17.1 236 60-350 138-404 (457)
60 COG1251 NirB NAD(P)H-nitrite r 99.9 2.6E-24 5.6E-29 204.4 17.8 241 62-348 3-257 (793)
61 PRK12775 putative trifunctiona 99.9 9.5E-25 2.1E-29 224.1 15.7 283 14-350 389-703 (1006)
62 TIGR03315 Se_ygfK putative sel 99.9 4E-24 8.7E-29 215.9 19.5 275 14-350 493-792 (1012)
63 PRK12778 putative bifunctional 99.9 1.6E-24 3.4E-29 218.8 16.6 241 60-350 429-703 (752)
64 PRK12810 gltD glutamate syntha 99.9 4.8E-24 1E-28 204.6 16.7 289 9-350 95-417 (471)
65 KOG1335 Dihydrolipoamide dehyd 99.9 9.7E-24 2.1E-28 185.9 16.5 245 61-351 38-333 (506)
66 PRK12814 putative NADPH-depend 99.9 6.4E-24 1.4E-28 210.5 16.7 233 60-350 191-453 (652)
67 TIGR01372 soxA sarcosine oxida 99.9 7.6E-23 1.6E-27 211.2 23.5 245 61-346 162-423 (985)
68 PRK12769 putative oxidoreducta 99.9 2.1E-23 4.5E-28 207.6 17.9 273 27-350 296-601 (654)
69 PRK12770 putative glutamate sy 99.9 2.7E-23 5.9E-28 192.5 16.6 251 61-350 17-303 (352)
70 TIGR01318 gltD_gamma_fam gluta 99.9 8.6E-23 1.9E-27 195.4 17.1 285 14-350 98-415 (467)
71 PRK12809 putative oxidoreducta 99.9 1.3E-22 2.9E-27 201.0 17.3 272 27-350 279-584 (639)
72 TIGR01317 GOGAT_sm_gam glutama 99.9 1.5E-21 3.2E-26 187.5 17.5 247 61-350 142-431 (485)
73 PLN02852 ferredoxin-NADP+ redu 99.9 1.9E-21 4.1E-26 184.5 17.7 159 61-252 25-188 (491)
74 PRK06567 putative bifunctional 99.9 6E-21 1.3E-25 189.9 19.4 168 59-251 380-571 (1028)
75 KOG1399 Flavin-containing mono 99.9 3E-21 6.4E-26 180.5 13.8 234 61-344 5-279 (448)
76 PRK13984 putative oxidoreducta 99.9 9.1E-21 2E-25 187.6 17.8 233 60-340 281-544 (604)
77 COG3634 AhpF Alkyl hydroperoxi 99.8 1.5E-20 3.3E-25 163.9 10.8 233 60-350 209-467 (520)
78 KOG1346 Programmed cell death 99.8 6.4E-19 1.4E-23 157.1 18.0 251 61-349 177-464 (659)
79 COG0446 HcaD Uncharacterized N 99.8 2.2E-18 4.7E-23 163.2 22.9 229 65-342 1-245 (415)
80 PF13434 K_oxygenase: L-lysine 99.8 7.4E-20 1.6E-24 167.5 12.3 178 62-277 2-225 (341)
81 PRK12771 putative glutamate sy 99.8 2.1E-19 4.6E-24 176.3 16.2 232 60-350 135-396 (564)
82 COG2072 TrkA Predicted flavopr 99.8 8.3E-20 1.8E-24 173.1 12.5 175 60-277 6-208 (443)
83 PF13738 Pyr_redox_3: Pyridine 99.8 2.4E-20 5.1E-25 159.5 6.1 167 66-277 1-200 (203)
84 COG0493 GltD NADPH-dependent g 99.8 1.2E-18 2.6E-23 163.9 13.3 244 60-351 121-404 (457)
85 KOG0399 Glutamate synthase [Am 99.8 9.8E-19 2.1E-23 171.0 7.4 215 4-254 1732-1948(2142)
86 COG3486 IucD Lysine/ornithine 99.7 5.9E-17 1.3E-21 145.2 15.4 252 60-350 3-359 (436)
87 COG1148 HdrA Heterodisulfide r 99.7 1.6E-14 3.5E-19 131.7 20.3 174 164-350 294-495 (622)
88 PTZ00188 adrenodoxin reductase 99.6 5.4E-15 1.2E-19 138.6 14.0 38 61-98 38-76 (506)
89 KOG3851 Sulfide:quinone oxidor 99.6 1E-14 2.2E-19 126.4 11.1 251 61-344 38-305 (446)
90 KOG2755 Oxidoreductase [Genera 99.6 2.3E-14 4.9E-19 121.0 11.3 160 64-277 1-165 (334)
91 PF07992 Pyr_redox_2: Pyridine 99.6 2.1E-15 4.6E-20 128.5 4.1 149 64-237 1-159 (201)
92 KOG1800 Ferredoxin/adrenodoxin 99.5 1.7E-13 3.8E-18 121.6 12.7 180 63-276 21-213 (468)
93 COG2081 Predicted flavoprotein 99.4 7.7E-12 1.7E-16 112.9 16.6 80 268-347 93-189 (408)
94 PF00070 Pyr_redox: Pyridine n 99.3 2.2E-11 4.9E-16 87.5 10.1 74 232-319 1-80 (80)
95 COG4529 Uncharacterized protei 99.3 2.1E-10 4.6E-15 106.1 17.8 176 63-277 2-231 (474)
96 PRK09897 hypothetical protein; 99.2 4.8E-10 1E-14 108.3 13.7 185 63-278 2-246 (534)
97 PF03486 HI0933_like: HI0933-l 99.1 3.9E-10 8.5E-15 105.6 10.4 63 283-345 108-186 (409)
98 PF01266 DAO: FAD dependent ox 99.1 1.6E-09 3.6E-14 100.2 13.1 86 256-344 120-212 (358)
99 PLN02463 lycopene beta cyclase 99.1 1.3E-09 2.9E-14 103.5 11.5 117 60-185 26-172 (447)
100 COG0579 Predicted dehydrogenas 99.0 5.9E-09 1.3E-13 97.1 12.3 64 284-347 153-223 (429)
101 PTZ00383 malate:quinone oxidor 99.0 1.3E-08 2.8E-13 97.9 14.5 61 284-345 211-283 (497)
102 PRK05329 anaerobic glycerol-3- 99.0 4.8E-09 1E-13 98.7 10.7 91 234-336 219-319 (422)
103 TIGR03364 HpnW_proposed FAD de 98.9 1.4E-08 3.1E-13 94.7 13.8 56 284-340 145-202 (365)
104 TIGR01377 soxA_mon sarcosine o 98.9 7.5E-08 1.6E-12 90.3 17.2 60 284-344 145-209 (380)
105 TIGR02032 GG-red-SF geranylger 98.9 5.9E-09 1.3E-13 94.0 9.1 35 63-97 1-35 (295)
106 COG0644 FixC Dehydrogenases (f 98.9 7.3E-09 1.6E-13 97.7 9.0 40 61-100 2-41 (396)
107 PRK08773 2-octaprenyl-3-methyl 98.9 4.6E-08 9.9E-13 92.2 14.4 52 285-336 114-170 (392)
108 PRK11728 hydroxyglutarate oxid 98.9 4.9E-08 1.1E-12 92.1 14.4 61 284-345 149-214 (393)
109 PF01134 GIDA: Glucose inhibit 98.9 6.7E-09 1.5E-13 95.6 8.0 109 64-180 1-150 (392)
110 PRK11259 solA N-methyltryptoph 98.9 7.1E-08 1.5E-12 90.3 14.9 59 284-343 149-212 (376)
111 PLN02697 lycopene epsilon cycl 98.8 2.1E-08 4.7E-13 96.9 11.5 115 60-182 106-248 (529)
112 PRK05192 tRNA uridine 5-carbox 98.8 1.5E-08 3.3E-13 98.3 10.4 113 61-181 3-156 (618)
113 COG1635 THI4 Ribulose 1,5-bisp 98.8 1.2E-08 2.7E-13 84.8 7.7 40 62-101 30-69 (262)
114 PRK12842 putative succinate de 98.8 1.5E-09 3.3E-14 107.0 2.8 39 60-98 7-45 (574)
115 TIGR01790 carotene-cycl lycope 98.8 2E-08 4.3E-13 94.5 9.5 110 64-182 1-141 (388)
116 PRK07364 2-octaprenyl-6-methox 98.8 3.5E-08 7.5E-13 93.7 11.0 36 61-96 17-52 (415)
117 PRK12409 D-amino acid dehydrog 98.8 1E-07 2.2E-12 90.4 14.1 34 63-96 2-35 (410)
118 PRK10157 putative oxidoreducta 98.8 2.4E-08 5.2E-13 95.1 9.7 36 61-96 4-39 (428)
119 TIGR01292 TRX_reduct thioredox 98.8 6E-08 1.3E-12 87.7 11.7 91 232-336 2-113 (300)
120 PF01946 Thi4: Thi4 family; PD 98.8 1.3E-08 2.8E-13 85.0 6.6 38 61-98 16-53 (230)
121 PRK10015 oxidoreductase; Provi 98.8 2.6E-08 5.7E-13 94.7 9.4 37 61-97 4-40 (429)
122 PF05834 Lycopene_cycl: Lycope 98.8 5.5E-08 1.2E-12 91.0 10.6 111 64-183 1-143 (374)
123 PLN00093 geranylgeranyl diphos 98.7 6.8E-08 1.5E-12 92.3 11.3 37 59-95 36-72 (450)
124 PRK04176 ribulose-1,5-biphosph 98.7 5.3E-08 1.1E-12 86.0 9.7 37 61-97 24-60 (257)
125 PRK06847 hypothetical protein; 98.7 4.8E-08 1E-12 91.5 9.9 35 62-96 4-38 (375)
126 PF13454 NAD_binding_9: FAD-NA 98.7 4.6E-08 9.9E-13 79.8 8.4 106 66-180 1-155 (156)
127 PRK00711 D-amino acid dehydrog 98.7 2.2E-07 4.8E-12 88.3 14.3 59 284-343 201-265 (416)
128 TIGR01373 soxB sarcosine oxida 98.7 2E-07 4.3E-12 88.4 13.7 60 284-344 183-249 (407)
129 TIGR02023 BchP-ChlP geranylger 98.7 3.7E-08 8E-13 92.7 8.6 32 63-94 1-32 (388)
130 PRK07608 ubiquinone biosynthes 98.7 7.3E-08 1.6E-12 90.7 10.5 37 61-97 4-40 (388)
131 PRK13339 malate:quinone oxidor 98.7 1.8E-07 3.9E-12 89.8 13.3 62 284-345 184-257 (497)
132 PRK07843 3-ketosteroid-delta-1 98.7 1.9E-08 4.1E-13 98.8 6.8 96 232-341 162-277 (557)
133 TIGR00292 thiazole biosynthesi 98.7 9.1E-08 2E-12 84.2 9.9 37 61-97 20-56 (254)
134 PRK07494 2-octaprenyl-6-methox 98.7 9.2E-08 2E-12 90.0 10.4 36 61-96 6-41 (388)
135 TIGR01320 mal_quin_oxido malat 98.7 2E-07 4.3E-12 89.8 12.4 62 284-345 178-250 (483)
136 TIGR00275 flavoprotein, HI0933 98.7 3.2E-07 6.9E-12 86.6 13.0 67 268-335 87-160 (400)
137 PRK06834 hypothetical protein; 98.7 1.3E-07 2.7E-12 91.6 9.9 35 62-96 3-37 (488)
138 PRK13977 myosin-cross-reactive 98.6 6.5E-07 1.4E-11 86.3 14.1 38 61-98 21-62 (576)
139 TIGR03329 Phn_aa_oxid putative 98.6 1E-06 2.2E-11 84.8 15.7 55 284-339 183-241 (460)
140 KOG2820 FAD-dependent oxidored 98.6 6.9E-07 1.5E-11 79.0 12.8 85 254-340 122-217 (399)
141 PRK07333 2-octaprenyl-6-methox 98.6 1.2E-07 2.5E-12 89.8 8.6 35 62-96 1-37 (403)
142 PLN02661 Putative thiazole syn 98.6 3.2E-07 7E-12 83.4 10.9 38 60-97 90-128 (357)
143 PRK09126 hypothetical protein; 98.6 2E-07 4.4E-12 87.8 9.9 36 61-96 2-37 (392)
144 TIGR03378 glycerol3P_GlpB glyc 98.6 2.1E-06 4.5E-11 80.2 16.2 60 283-342 262-330 (419)
145 COG3380 Predicted NAD/FAD-depe 98.6 9.9E-08 2.1E-12 81.9 6.6 33 63-95 2-34 (331)
146 PRK11101 glpA sn-glycerol-3-ph 98.6 2.8E-07 6.1E-12 90.4 10.6 87 255-343 122-219 (546)
147 PRK06184 hypothetical protein; 98.6 2E-07 4.4E-12 90.7 9.4 35 62-96 3-37 (502)
148 PRK05714 2-octaprenyl-3-methyl 98.6 3E-07 6.6E-12 87.0 10.3 34 62-95 2-35 (405)
149 PRK05732 2-octaprenyl-6-methox 98.6 3E-07 6.5E-12 86.7 10.0 34 61-94 2-38 (395)
150 PRK07236 hypothetical protein; 98.6 2.9E-07 6.2E-12 86.6 9.7 36 61-96 5-40 (386)
151 PRK01747 mnmC bifunctional tRN 98.6 7.2E-07 1.6E-11 89.7 12.8 56 284-340 408-468 (662)
152 PRK08849 2-octaprenyl-3-methyl 98.6 4.2E-07 9.1E-12 85.4 10.5 34 62-95 3-36 (384)
153 TIGR02028 ChlP geranylgeranyl 98.6 2.8E-07 6.1E-12 87.0 9.3 34 63-96 1-34 (398)
154 TIGR01984 UbiH 2-polyprenyl-6- 98.6 3E-07 6.6E-12 86.3 9.4 33 64-96 1-34 (382)
155 PRK08163 salicylate hydroxylas 98.6 3.3E-07 7.2E-12 86.5 9.6 37 61-97 3-39 (396)
156 PRK08020 ubiF 2-octaprenyl-3-m 98.5 5.4E-07 1.2E-11 84.9 10.9 35 61-95 4-38 (391)
157 PRK09754 phenylpropionate diox 98.5 5.3E-07 1.1E-11 85.1 10.6 94 231-336 4-113 (396)
158 PRK05257 malate:quinone oxidor 98.5 9.8E-07 2.1E-11 85.2 12.6 62 284-345 183-256 (494)
159 PRK08244 hypothetical protein; 98.5 3.3E-07 7.1E-12 89.1 9.3 35 62-96 2-36 (493)
160 PF13450 NAD_binding_8: NAD(P) 98.5 9.3E-08 2E-12 66.1 3.9 31 67-97 1-31 (68)
161 PRK06753 hypothetical protein; 98.5 4.4E-07 9.5E-12 84.9 9.6 35 63-97 1-35 (373)
162 PRK07251 pyridine nucleotide-d 98.5 6.7E-07 1.5E-11 85.6 10.6 100 62-186 157-257 (438)
163 PRK11445 putative oxidoreducta 98.5 6.3E-07 1.4E-11 83.2 10.1 33 63-96 2-34 (351)
164 PRK08850 2-octaprenyl-6-methox 98.5 6.4E-07 1.4E-11 84.9 10.1 33 62-94 4-36 (405)
165 PRK07045 putative monooxygenas 98.5 7.1E-07 1.5E-11 84.0 10.1 37 61-97 4-40 (388)
166 PRK06185 hypothetical protein; 98.5 5.8E-07 1.3E-11 85.2 9.6 36 61-96 5-40 (407)
167 COG0654 UbiH 2-polyprenyl-6-me 98.5 5.4E-07 1.2E-11 84.8 9.2 33 62-94 2-34 (387)
168 PLN02464 glycerol-3-phosphate 98.5 3.4E-06 7.5E-11 83.9 15.1 88 254-343 199-304 (627)
169 PRK06126 hypothetical protein; 98.5 9.8E-07 2.1E-11 86.9 11.1 37 60-96 5-41 (545)
170 TIGR03169 Nterm_to_SelD pyridi 98.5 7.1E-07 1.5E-11 83.3 9.7 94 232-336 1-108 (364)
171 PRK06912 acoL dihydrolipoamide 98.5 9.1E-07 2E-11 85.1 10.6 102 62-186 170-272 (458)
172 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.2E-06 2.6E-11 83.1 11.0 105 61-187 172-277 (454)
173 PRK07588 hypothetical protein; 98.5 7E-07 1.5E-11 84.2 9.5 35 63-97 1-35 (391)
174 TIGR00136 gidA glucose-inhibit 98.5 1.1E-06 2.4E-11 85.4 10.8 33 63-95 1-33 (617)
175 PTZ00318 NADH dehydrogenase-li 98.5 8.2E-07 1.8E-11 84.6 9.8 95 228-336 8-126 (424)
176 PRK06134 putative FAD-binding 98.5 2.8E-07 6.2E-12 91.0 6.9 38 60-97 10-47 (581)
177 PF12831 FAD_oxidored: FAD dep 98.5 1.3E-07 2.9E-12 89.9 4.3 34 64-97 1-34 (428)
178 TIGR01350 lipoamide_DH dihydro 98.4 1.1E-06 2.4E-11 84.7 10.4 102 62-185 170-272 (461)
179 PRK05868 hypothetical protein; 98.4 1.5E-06 3.2E-11 81.4 10.9 35 63-97 2-36 (372)
180 TIGR01988 Ubi-OHases Ubiquinon 98.4 8.3E-07 1.8E-11 83.3 9.3 33 64-96 1-33 (385)
181 PRK07190 hypothetical protein; 98.4 1.1E-06 2.3E-11 85.1 10.1 36 61-96 4-39 (487)
182 PRK06183 mhpA 3-(3-hydroxyphen 98.4 1.5E-06 3.3E-11 85.3 11.2 37 60-96 8-44 (538)
183 PRK08243 4-hydroxybenzoate 3-m 98.4 1.4E-06 3.1E-11 82.1 10.6 35 62-96 2-36 (392)
184 PRK09564 coenzyme A disulfide 98.4 1.5E-06 3.2E-11 83.4 10.8 93 232-336 2-116 (444)
185 PLN02985 squalene monooxygenas 98.4 2E-06 4.3E-11 83.6 11.5 37 59-95 40-76 (514)
186 PRK04965 NADH:flavorubredoxin 98.4 1.6E-06 3.5E-11 81.3 10.6 100 62-184 141-241 (377)
187 PRK08401 L-aspartate oxidase; 98.4 1.6E-06 3.5E-11 83.5 10.7 33 63-95 2-34 (466)
188 PRK05976 dihydrolipoamide dehy 98.4 1.7E-06 3.6E-11 83.7 10.8 103 62-186 180-285 (472)
189 PRK08132 FAD-dependent oxidore 98.4 1.7E-06 3.8E-11 85.1 11.2 36 61-96 22-57 (547)
190 PRK06416 dihydrolipoamide dehy 98.4 1.6E-06 3.5E-11 83.6 10.7 104 62-186 172-276 (462)
191 TIGR03219 salicylate_mono sali 98.4 1.3E-06 2.8E-11 83.0 9.7 35 63-97 1-36 (414)
192 KOG2853 Possible oxidoreductas 98.4 1.7E-06 3.6E-11 76.7 9.4 92 252-344 210-329 (509)
193 PRK12779 putative bifunctional 98.4 1.1E-06 2.5E-11 90.8 9.1 92 228-336 304-406 (944)
194 COG2509 Uncharacterized FAD-de 98.4 1.3E-05 2.9E-10 73.9 14.9 70 278-347 167-246 (486)
195 PF00070 Pyr_redox: Pyridine n 98.4 1.3E-06 2.8E-11 62.5 6.9 73 64-151 1-74 (80)
196 PRK07846 mycothione reductase; 98.4 2.6E-06 5.6E-11 81.8 10.9 101 62-187 166-267 (451)
197 TIGR02053 MerA mercuric reduct 98.4 1.9E-06 4.2E-11 83.0 10.1 104 62-186 166-270 (463)
198 TIGR01424 gluta_reduc_2 glutat 98.4 3.7E-06 8E-11 80.7 11.3 91 232-336 4-143 (446)
199 TIGR01789 lycopene_cycl lycope 98.3 2.2E-06 4.7E-11 80.0 9.4 32 64-95 1-34 (370)
200 PRK06370 mercuric reductase; V 98.3 3.3E-06 7.1E-11 81.4 10.7 101 62-185 171-274 (463)
201 PF04820 Trp_halogenase: Trypt 98.3 7.8E-06 1.7E-10 78.3 12.9 53 284-336 154-212 (454)
202 KOG0029 Amine oxidase [Seconda 98.3 5.4E-07 1.2E-11 86.6 4.7 39 60-98 13-51 (501)
203 PRK05249 soluble pyridine nucl 98.3 3.4E-06 7.4E-11 81.3 10.3 100 62-185 175-275 (461)
204 PRK06116 glutathione reductase 98.3 3.7E-06 8.1E-11 80.8 10.5 90 232-336 6-144 (450)
205 TIGR03140 AhpF alkyl hydropero 98.3 5.5E-06 1.2E-10 80.9 11.5 94 229-336 211-324 (515)
206 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 1.5E-06 3.1E-11 81.6 7.1 34 63-96 1-34 (433)
207 COG1252 Ndh NADH dehydrogenase 98.3 3.6E-06 7.7E-11 78.1 9.4 94 231-336 4-112 (405)
208 TIGR03385 CoA_CoA_reduc CoA-di 98.3 4.1E-06 9E-11 79.9 10.1 99 62-185 137-236 (427)
209 COG0445 GidA Flavin-dependent 98.3 9.7E-07 2.1E-11 83.0 5.3 112 62-181 4-157 (621)
210 PRK07818 dihydrolipoamide dehy 98.3 5.9E-06 1.3E-10 79.7 10.9 103 62-185 172-276 (466)
211 PRK15317 alkyl hydroperoxide r 98.3 7.9E-06 1.7E-10 79.8 11.8 92 231-336 212-323 (517)
212 PRK14694 putative mercuric red 98.3 5.6E-06 1.2E-10 79.9 10.6 99 62-186 178-277 (468)
213 PRK06327 dihydrolipoamide dehy 98.3 7E-06 1.5E-10 79.4 11.2 104 62-186 183-288 (475)
214 TIGR03452 mycothione_red mycot 98.3 7.3E-06 1.6E-10 78.7 10.9 100 62-186 169-269 (452)
215 PF01494 FAD_binding_3: FAD bi 98.3 7.6E-07 1.6E-11 82.3 4.0 35 63-97 2-36 (356)
216 PRK06475 salicylate hydroxylas 98.2 7.4E-06 1.6E-10 77.5 10.5 34 63-96 3-36 (400)
217 TIGR02374 nitri_red_nirB nitri 98.2 7.3E-06 1.6E-10 83.8 11.0 93 233-336 1-109 (785)
218 PRK14989 nitrite reductase sub 98.2 1.1E-05 2.5E-10 82.6 12.3 96 231-336 4-114 (847)
219 PRK09853 putative selenate red 98.2 5.8E-06 1.3E-10 84.9 10.1 89 228-336 537-636 (1019)
220 PRK06996 hypothetical protein; 98.2 5.5E-06 1.2E-10 78.3 9.2 36 60-95 9-48 (398)
221 TIGR01421 gluta_reduc_1 glutat 98.2 6.5E-06 1.4E-10 79.0 9.7 102 62-186 166-269 (450)
222 PLN02507 glutathione reductase 98.2 7.8E-06 1.7E-10 79.4 10.3 101 62-186 203-304 (499)
223 PRK06115 dihydrolipoamide dehy 98.2 8.5E-06 1.8E-10 78.6 10.5 103 62-185 174-279 (466)
224 COG1233 Phytoene dehydrogenase 98.2 1.2E-06 2.6E-11 84.8 4.5 50 284-333 224-279 (487)
225 PRK06175 L-aspartate oxidase; 98.2 1.3E-05 2.8E-10 76.5 11.3 35 61-96 3-37 (433)
226 PRK11749 dihydropyrimidine deh 98.2 5.7E-06 1.2E-10 79.6 8.9 89 228-334 138-236 (457)
227 PRK07845 flavoprotein disulfid 98.2 9.3E-06 2E-10 78.3 10.3 101 62-186 177-278 (466)
228 PRK08013 oxidoreductase; Provi 98.2 1.6E-06 3.4E-11 82.0 4.8 35 62-96 3-37 (400)
229 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 1.7E-06 3.6E-11 81.5 4.3 35 62-96 2-36 (390)
230 PF13738 Pyr_redox_3: Pyridine 98.2 1.4E-05 3.1E-10 67.8 9.7 86 234-333 1-136 (203)
231 PRK06847 hypothetical protein; 98.2 2.4E-05 5.1E-10 73.3 11.9 52 285-336 108-164 (375)
232 PTZ00058 glutathione reductase 98.1 1.3E-05 2.8E-10 78.6 10.1 101 62-185 237-339 (561)
233 PRK08010 pyridine nucleotide-d 98.1 1.5E-05 3.3E-10 76.3 10.5 99 62-185 158-257 (441)
234 COG0446 HcaD Uncharacterized N 98.1 9.3E-06 2E-10 76.8 8.7 100 62-183 136-238 (415)
235 PRK10262 thioredoxin reductase 98.1 2.4E-05 5.1E-10 71.7 11.1 94 229-336 5-118 (321)
236 PRK06467 dihydrolipoamide dehy 98.1 1.8E-05 3.9E-10 76.4 10.2 102 62-186 174-278 (471)
237 PRK14727 putative mercuric red 98.1 1.9E-05 4.1E-10 76.4 10.3 99 62-186 188-287 (479)
238 TIGR00551 nadB L-aspartate oxi 98.1 2E-05 4.4E-10 76.4 10.5 34 62-96 2-35 (488)
239 TIGR01316 gltA glutamate synth 98.1 8.7E-06 1.9E-10 78.1 7.8 91 228-336 131-232 (449)
240 PRK13748 putative mercuric red 98.1 1.9E-05 4.2E-10 78.0 10.5 99 62-186 270-369 (561)
241 PRK07208 hypothetical protein; 98.1 3.2E-06 6.9E-11 81.9 4.8 38 61-98 3-40 (479)
242 PRK13512 coenzyme A disulfide 98.1 1.7E-05 3.7E-10 75.9 9.7 96 62-185 148-244 (438)
243 PRK12831 putative oxidoreducta 98.1 1.1E-05 2.4E-10 77.6 8.3 93 227-336 137-242 (464)
244 PRK11883 protoporphyrinogen ox 98.1 2.9E-06 6.2E-11 81.5 4.2 36 63-98 1-38 (451)
245 PRK12770 putative glutamate sy 98.1 1.2E-05 2.7E-10 74.6 8.2 94 229-336 17-132 (352)
246 PLN02268 probable polyamine ox 98.1 3.7E-06 8.1E-11 80.4 4.6 37 63-99 1-37 (435)
247 TIGR03143 AhpF_homolog putativ 98.1 2.9E-05 6.4E-10 76.5 11.0 90 232-336 6-115 (555)
248 PTZ00052 thioredoxin reductase 98.1 2.6E-05 5.7E-10 75.8 10.4 100 62-186 182-282 (499)
249 TIGR01423 trypano_reduc trypan 98.1 2.4E-05 5.1E-10 75.7 9.9 100 62-185 187-291 (486)
250 PRK06292 dihydrolipoamide dehy 98.1 2.8E-05 6.2E-10 74.9 10.5 102 62-186 169-272 (460)
251 COG3349 Uncharacterized conser 98.1 3.6E-06 7.7E-11 79.2 4.0 35 63-97 1-35 (485)
252 PRK12778 putative bifunctional 98.0 1.2E-05 2.7E-10 82.0 8.3 92 228-336 429-531 (752)
253 PLN02463 lycopene beta cyclase 98.0 3.9E-05 8.4E-10 73.3 10.9 91 232-336 30-170 (447)
254 PRK12775 putative trifunctiona 98.0 1.1E-05 2.5E-10 84.2 7.8 91 229-336 429-531 (1006)
255 PLN02852 ferredoxin-NADP+ redu 98.0 1.5E-05 3.2E-10 76.6 8.0 92 228-336 24-127 (491)
256 TIGR01438 TGR thioredoxin and 98.0 2.8E-05 6.1E-10 75.2 9.9 102 63-186 181-283 (484)
257 PRK06617 2-octaprenyl-6-methox 98.0 5E-06 1.1E-10 77.9 4.5 32 63-94 2-33 (374)
258 PF01134 GIDA: Glucose inhibit 98.0 4.2E-05 9E-10 70.9 10.4 88 232-333 1-150 (392)
259 PRK07233 hypothetical protein; 98.0 4.4E-06 9.5E-11 79.7 4.1 50 284-333 198-252 (434)
260 KOG2852 Possible oxidoreductas 98.0 7E-05 1.5E-09 65.2 10.8 36 62-97 10-51 (380)
261 PRK07538 hypothetical protein; 98.0 5E-06 1.1E-10 79.0 4.3 34 63-96 1-34 (413)
262 PRK05335 tRNA (uracil-5-)-meth 98.0 5.5E-06 1.2E-10 77.4 4.4 35 62-96 2-36 (436)
263 PLN02172 flavin-containing mon 98.0 6.4E-05 1.4E-09 72.1 11.8 94 229-336 9-176 (461)
264 KOG2844 Dimethylglycine dehydr 98.0 2.4E-05 5.2E-10 75.2 8.5 87 255-344 158-252 (856)
265 TIGR03315 Se_ygfK putative sel 98.0 2E-05 4.4E-10 81.3 8.6 90 228-336 535-634 (1012)
266 PLN02576 protoporphyrinogen ox 98.0 6.7E-06 1.5E-10 80.0 4.8 38 61-98 11-49 (496)
267 TIGR02733 desat_CrtD C-3',4' d 98.0 7.2E-06 1.6E-10 79.7 4.5 35 63-97 2-36 (492)
268 TIGR00562 proto_IX_ox protopor 98.0 7E-06 1.5E-10 79.2 4.4 35 63-97 3-41 (462)
269 COG0665 DadA Glycine/D-amino a 98.0 8E-06 1.7E-10 76.7 4.6 37 61-97 3-39 (387)
270 PF07992 Pyr_redox_2: Pyridine 98.0 8E-06 1.7E-10 69.3 4.1 91 232-336 1-123 (201)
271 TIGR01318 gltD_gamma_fam gluta 97.9 2.7E-05 5.8E-10 75.1 8.1 90 228-336 139-239 (467)
272 TIGR01989 COQ6 Ubiquinone bios 97.9 8.2E-06 1.8E-10 78.1 4.5 32 63-94 1-36 (437)
273 PTZ00367 squalene epoxidase; P 97.9 9.8E-06 2.1E-10 79.5 5.1 35 61-95 32-66 (567)
274 PRK12266 glpD glycerol-3-phosp 97.9 1E-05 2.2E-10 78.8 4.9 36 61-96 5-40 (508)
275 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.1E-05 2.3E-10 75.0 4.6 35 63-97 2-36 (377)
276 COG1232 HemY Protoporphyrinoge 97.9 8.6E-06 1.9E-10 76.7 4.0 35 63-97 1-37 (444)
277 PRK01438 murD UDP-N-acetylmura 97.9 3.3E-05 7.2E-10 74.9 8.2 85 230-346 16-105 (480)
278 PLN02546 glutathione reductase 97.9 6.4E-05 1.4E-09 73.8 9.9 100 62-185 252-353 (558)
279 PRK08274 tricarballylate dehyd 97.9 1.1E-05 2.5E-10 77.8 4.7 35 61-95 3-37 (466)
280 PRK13369 glycerol-3-phosphate 97.9 1.2E-05 2.6E-10 78.2 4.8 36 61-96 5-40 (502)
281 KOG1336 Monodehydroascorbate/f 97.9 6.7E-05 1.4E-09 69.8 9.2 104 62-188 213-319 (478)
282 PLN02927 antheraxanthin epoxid 97.9 1.1E-05 2.5E-10 79.8 4.5 36 60-95 79-114 (668)
283 KOG1335 Dihydrolipoamide dehyd 97.9 5.1E-05 1.1E-09 68.6 8.1 105 61-186 210-318 (506)
284 PTZ00153 lipoamide dehydrogena 97.9 8.2E-05 1.8E-09 74.2 10.5 110 62-186 312-431 (659)
285 PF00890 FAD_binding_2: FAD bi 97.9 1.3E-05 2.9E-10 76.2 4.7 34 64-97 1-34 (417)
286 PLN00128 Succinate dehydrogena 97.9 1.4E-05 3.1E-10 79.6 5.1 35 61-95 49-83 (635)
287 PRK06481 fumarate reductase fl 97.9 2.5E-05 5.5E-10 76.0 6.6 37 60-96 59-95 (506)
288 TIGR01317 GOGAT_sm_gam glutama 97.9 3.9E-05 8.4E-10 74.3 7.8 91 228-336 141-242 (485)
289 COG0492 TrxB Thioredoxin reduc 97.9 0.00014 3E-09 65.7 10.8 90 232-336 5-116 (305)
290 TIGR02734 crtI_fam phytoene de 97.9 1E-05 2.3E-10 78.8 3.7 51 284-334 219-275 (502)
291 PRK08294 phenol 2-monooxygenas 97.9 2.2E-05 4.7E-10 78.4 6.0 36 61-96 31-67 (634)
292 PLN02487 zeta-carotene desatur 97.9 2.1E-05 4.6E-10 77.0 5.8 38 60-97 73-110 (569)
293 PRK12416 protoporphyrinogen ox 97.9 1.4E-05 2.9E-10 77.2 4.2 36 63-98 2-43 (463)
294 KOG2311 NAD/FAD-utilizing prot 97.8 2.2E-05 4.9E-10 72.7 5.2 35 60-94 26-60 (679)
295 PLN02568 polyamine oxidase 97.8 1.9E-05 4.2E-10 77.1 5.1 37 61-97 4-45 (539)
296 PRK12810 gltD glutamate syntha 97.8 4.5E-05 9.8E-10 73.7 7.6 89 228-334 141-239 (471)
297 TIGR02730 carot_isom carotene 97.8 1.6E-05 3.4E-10 77.4 4.3 53 284-336 229-287 (493)
298 KOG2665 Predicted FAD-dependen 97.8 9.1E-05 2E-09 65.3 8.4 39 60-98 46-86 (453)
299 PF00732 GMC_oxred_N: GMC oxid 97.8 3.3E-05 7.3E-10 69.8 6.1 36 63-98 1-37 (296)
300 TIGR02731 phytoene_desat phyto 97.8 1.6E-05 3.4E-10 76.5 4.2 35 64-98 1-35 (453)
301 PRK07121 hypothetical protein; 97.8 3E-05 6.6E-10 75.3 6.0 37 61-97 19-55 (492)
302 COG1231 Monoamine oxidase [Ami 97.8 2.6E-05 5.7E-10 72.3 5.1 41 60-100 5-45 (450)
303 COG0029 NadB Aspartate oxidase 97.8 7.5E-05 1.6E-09 69.9 8.0 33 64-97 9-41 (518)
304 KOG2415 Electron transfer flav 97.8 2E-05 4.3E-10 71.8 4.1 39 59-97 73-117 (621)
305 TIGR02032 GG-red-SF geranylger 97.8 0.00026 5.6E-09 63.6 11.4 91 232-336 2-149 (295)
306 PRK12814 putative NADPH-depend 97.8 5.1E-05 1.1E-09 76.1 7.3 91 228-336 191-291 (652)
307 PRK12809 putative oxidoreducta 97.8 7.9E-05 1.7E-09 74.7 8.0 90 228-336 308-408 (639)
308 PRK07236 hypothetical protein; 97.7 0.00017 3.6E-09 67.9 9.7 92 231-336 7-155 (386)
309 PLN02529 lysine-specific histo 97.7 3.2E-05 6.8E-10 77.7 4.9 39 60-98 158-196 (738)
310 KOG1298 Squalene monooxygenase 97.7 0.00011 2.4E-09 66.5 7.7 116 59-181 42-207 (509)
311 TIGR01813 flavo_cyto_c flavocy 97.7 3E-05 6.6E-10 74.2 4.1 33 64-96 1-34 (439)
312 PRK06834 hypothetical protein; 97.7 0.00043 9.3E-09 67.2 11.9 50 287-336 103-157 (488)
313 TIGR01789 lycopene_cycl lycope 97.7 0.00028 6E-09 66.0 10.2 93 232-336 1-139 (370)
314 KOG2614 Kynurenine 3-monooxyge 97.7 4.1E-05 8.8E-10 70.1 4.3 35 62-96 2-36 (420)
315 TIGR01790 carotene-cycl lycope 97.7 0.00039 8.5E-09 65.4 11.2 90 232-335 1-141 (388)
316 PRK12769 putative oxidoreducta 97.7 0.00012 2.6E-09 73.7 8.0 90 228-335 325-424 (654)
317 PRK05192 tRNA uridine 5-carbox 97.7 0.00045 9.6E-09 67.7 11.5 91 232-336 6-158 (618)
318 PRK08641 sdhA succinate dehydr 97.7 3.8E-05 8.3E-10 76.1 4.3 34 62-95 3-36 (589)
319 PLN02676 polyamine oxidase 97.7 4.7E-05 1E-09 73.7 4.8 38 61-98 25-63 (487)
320 PRK07804 L-aspartate oxidase; 97.7 5.7E-05 1.2E-09 74.1 5.3 36 61-96 15-50 (541)
321 PRK12837 3-ketosteroid-delta-1 97.7 4.1E-05 8.9E-10 74.7 4.2 35 61-96 6-40 (513)
322 PLN02328 lysine-specific histo 97.7 5.7E-05 1.2E-09 76.3 5.2 38 60-97 236-273 (808)
323 TIGR02732 zeta_caro_desat caro 97.6 4.3E-05 9.2E-10 73.8 4.0 34 64-97 1-34 (474)
324 PRK12834 putative FAD-binding 97.6 5.3E-05 1.1E-09 74.6 4.6 35 61-95 3-37 (549)
325 PRK12835 3-ketosteroid-delta-1 97.6 6.7E-05 1.5E-09 74.2 5.4 37 61-97 10-46 (584)
326 PRK07057 sdhA succinate dehydr 97.6 6.2E-05 1.4E-09 74.6 5.1 35 61-95 11-45 (591)
327 PRK06452 sdhA succinate dehydr 97.6 5.1E-05 1.1E-09 74.9 4.4 35 61-95 4-38 (566)
328 PLN02612 phytoene desaturase 97.6 6.9E-05 1.5E-09 73.9 5.2 49 284-332 308-363 (567)
329 COG2907 Predicted NAD/FAD-bind 97.6 5.5E-05 1.2E-09 67.6 3.8 38 62-100 8-45 (447)
330 PRK07573 sdhA succinate dehydr 97.6 6.2E-05 1.3E-09 75.3 4.6 36 60-95 33-68 (640)
331 PRK07803 sdhA succinate dehydr 97.6 5E-05 1.1E-09 75.8 4.0 36 61-96 7-42 (626)
332 PRK08255 salicylyl-CoA 5-hydro 97.6 5.2E-05 1.1E-09 77.5 4.2 35 63-97 1-37 (765)
333 PRK07395 L-aspartate oxidase; 97.6 7.4E-05 1.6E-09 73.4 4.9 36 60-96 7-42 (553)
334 PRK09078 sdhA succinate dehydr 97.6 6.7E-05 1.5E-09 74.5 4.6 35 61-95 11-45 (598)
335 PRK08163 salicylate hydroxylas 97.6 0.00061 1.3E-08 64.3 10.9 49 288-336 113-167 (396)
336 PTZ00139 Succinate dehydrogena 97.6 6.3E-05 1.4E-09 74.9 4.3 36 61-96 28-63 (617)
337 PTZ00363 rab-GDP dissociation 97.6 8.1E-05 1.8E-09 70.9 4.8 53 284-336 232-291 (443)
338 PRK06567 putative bifunctional 97.6 0.00016 3.5E-09 73.8 7.2 36 227-276 380-415 (1028)
339 KOG0685 Flavin-containing amin 97.6 7.4E-05 1.6E-09 69.5 4.3 38 61-98 20-58 (498)
340 TIGR00292 thiazole biosynthesi 97.6 0.00089 1.9E-08 59.0 10.9 91 232-336 23-171 (254)
341 PTZ00188 adrenodoxin reductase 97.6 0.00022 4.8E-09 67.9 7.5 89 229-336 38-139 (506)
342 TIGR00136 gidA glucose-inhibit 97.6 0.00075 1.6E-08 66.1 11.2 91 232-336 2-155 (617)
343 PRK06069 sdhA succinate dehydr 97.6 6.5E-05 1.4E-09 74.4 4.1 36 61-96 4-42 (577)
344 PRK08958 sdhA succinate dehydr 97.6 7.1E-05 1.5E-09 74.1 4.3 36 61-96 6-41 (588)
345 PF00743 FMO-like: Flavin-bind 97.6 0.0006 1.3E-08 66.6 10.6 90 231-334 2-149 (531)
346 TIGR01812 sdhA_frdA_Gneg succi 97.6 6.3E-05 1.4E-09 74.4 4.0 32 64-95 1-32 (566)
347 PRK04176 ribulose-1,5-biphosph 97.6 0.001 2.2E-08 58.8 11.2 91 232-336 27-174 (257)
348 COG3075 GlpB Anaerobic glycero 97.6 8E-05 1.7E-09 66.0 4.1 34 61-94 1-34 (421)
349 PRK07333 2-octaprenyl-6-methox 97.6 0.00071 1.5E-08 64.0 11.0 60 285-345 112-176 (403)
350 PRK08626 fumarate reductase fl 97.5 7.1E-05 1.5E-09 75.0 4.1 36 61-96 4-39 (657)
351 PRK06854 adenylylsulfate reduc 97.5 6.9E-05 1.5E-09 74.6 3.9 35 62-96 11-47 (608)
352 PRK12845 3-ketosteroid-delta-1 97.5 0.00012 2.7E-09 72.0 5.5 39 60-99 14-52 (564)
353 PRK09126 hypothetical protein; 97.5 0.0008 1.7E-08 63.4 10.8 41 296-336 123-168 (392)
354 COG0493 GltD NADPH-dependent g 97.5 0.00016 3.5E-09 68.8 5.9 89 228-334 121-219 (457)
355 PRK12844 3-ketosteroid-delta-1 97.5 9.2E-05 2E-09 73.0 4.3 37 61-97 5-41 (557)
356 PRK05714 2-octaprenyl-3-methyl 97.5 0.00084 1.8E-08 63.6 10.7 49 288-336 116-169 (405)
357 PLN02697 lycopene epsilon cycl 97.5 0.00093 2E-08 65.1 10.9 92 231-336 109-249 (529)
358 PRK05945 sdhA succinate dehydr 97.5 9.4E-05 2E-09 73.2 4.2 35 62-96 3-39 (575)
359 PRK08275 putative oxidoreducta 97.5 9.5E-05 2.1E-09 72.9 4.1 36 61-96 8-45 (554)
360 PRK07608 ubiquinone biosynthes 97.5 0.0013 2.8E-08 61.8 11.6 50 286-336 113-168 (388)
361 TIGR02462 pyranose_ox pyranose 97.5 9.1E-05 2E-09 72.0 3.7 36 63-98 1-36 (544)
362 PLN02815 L-aspartate oxidase 97.5 0.00013 2.9E-09 72.1 4.9 36 61-97 28-63 (594)
363 KOG2404 Fumarate reductase, fl 97.5 0.00055 1.2E-08 60.7 7.9 31 64-94 11-41 (477)
364 PRK05868 hypothetical protein; 97.5 0.0012 2.7E-08 61.7 11.0 41 296-336 116-161 (372)
365 PRK07588 hypothetical protein; 97.4 0.0011 2.5E-08 62.4 10.7 40 297-336 115-159 (391)
366 PRK13984 putative oxidoreducta 97.4 0.00037 8E-09 69.6 7.7 89 228-335 281-380 (604)
367 TIGR02061 aprA adenosine phosp 97.4 0.00013 2.7E-09 72.4 4.2 33 64-96 1-37 (614)
368 PRK02106 choline dehydrogenase 97.4 0.00016 3.5E-09 71.4 4.9 36 61-96 4-40 (560)
369 COG0562 Glf UDP-galactopyranos 97.4 0.00017 3.7E-09 63.9 4.4 35 63-97 2-36 (374)
370 PRK12839 hypothetical protein; 97.4 0.00017 3.6E-09 71.2 4.9 37 61-97 7-43 (572)
371 KOG0399 Glutamate synthase [Am 97.4 0.00043 9.4E-09 70.4 7.5 94 222-334 1777-1881(2142)
372 PRK08071 L-aspartate oxidase; 97.4 0.00016 3.5E-09 70.4 4.3 34 62-96 3-36 (510)
373 PRK06263 sdhA succinate dehydr 97.4 0.00015 3.1E-09 71.4 4.0 34 61-95 6-39 (543)
374 PRK06184 hypothetical protein; 97.4 0.0015 3.1E-08 63.8 10.9 51 286-336 111-169 (502)
375 COG0578 GlpA Glycerol-3-phosph 97.4 0.00021 4.6E-09 68.5 4.9 37 61-97 11-47 (532)
376 PRK10157 putative oxidoreducta 97.4 0.0017 3.7E-08 62.0 11.1 57 287-344 111-172 (428)
377 PRK01438 murD UDP-N-acetylmura 97.4 0.00039 8.5E-09 67.4 6.6 34 62-95 16-49 (480)
378 PRK07364 2-octaprenyl-6-methox 97.3 0.0021 4.5E-08 61.1 11.3 50 287-336 124-182 (415)
379 PRK09231 fumarate reductase fl 97.3 0.00017 3.6E-09 71.5 3.8 36 61-96 3-40 (582)
380 KOG1276 Protoporphyrinogen oxi 97.3 0.00019 4.1E-09 65.9 3.8 37 61-97 10-48 (491)
381 TIGR01988 Ubi-OHases Ubiquinon 97.3 0.0023 5E-08 60.0 11.3 50 287-336 109-164 (385)
382 PF01494 FAD_binding_3: FAD bi 97.3 0.0016 3.4E-08 60.0 10.1 52 285-336 112-173 (356)
383 PRK08244 hypothetical protein; 97.3 0.0016 3.6E-08 63.3 10.5 51 286-336 102-160 (493)
384 COG0654 UbiH 2-polyprenyl-6-me 97.3 0.0021 4.5E-08 60.5 10.9 91 232-336 4-163 (387)
385 PRK07045 putative monooxygenas 97.3 0.0024 5.2E-08 60.1 10.9 51 286-336 108-166 (388)
386 PLN03000 amine oxidase 97.3 0.0003 6.5E-09 71.4 4.9 38 61-98 183-220 (881)
387 TIGR01176 fum_red_Fp fumarate 97.3 0.00022 4.7E-09 70.6 3.9 35 62-96 3-39 (580)
388 PRK08205 sdhA succinate dehydr 97.3 0.00025 5.3E-09 70.4 4.3 33 62-95 5-37 (583)
389 PRK08020 ubiF 2-octaprenyl-3-m 97.3 0.0029 6.2E-08 59.6 11.3 51 286-336 114-170 (391)
390 PRK09077 L-aspartate oxidase; 97.3 0.00027 5.8E-09 69.4 4.5 35 61-96 7-41 (536)
391 PRK06753 hypothetical protein; 97.3 0.0027 5.9E-08 59.3 11.0 39 298-336 110-153 (373)
392 PRK12771 putative glutamate sy 97.3 0.00078 1.7E-08 66.7 7.6 89 228-336 135-235 (564)
393 PTZ00306 NADH-dependent fumara 97.3 0.00031 6.7E-09 75.0 5.0 38 60-97 407-444 (1167)
394 PF13454 NAD_binding_9: FAD-NA 97.3 0.0026 5.6E-08 51.7 9.4 35 299-333 117-155 (156)
395 PF05834 Lycopene_cycl: Lycope 97.2 0.002 4.3E-08 60.4 9.8 92 233-336 2-143 (374)
396 PRK08849 2-octaprenyl-3-methyl 97.2 0.0029 6.3E-08 59.5 10.9 40 297-336 124-168 (384)
397 PRK12843 putative FAD-binding 97.2 0.00043 9.2E-09 68.6 5.4 38 60-97 14-51 (578)
398 PRK13800 putative oxidoreducta 97.2 0.00026 5.7E-09 73.7 4.1 36 61-96 12-47 (897)
399 PRK07190 hypothetical protein; 97.2 0.0027 5.9E-08 61.6 10.8 51 286-336 111-166 (487)
400 TIGR00137 gid_trmFO tRNA:m(5)U 97.2 0.00053 1.1E-08 64.6 5.5 31 232-276 2-32 (433)
401 TIGR01811 sdhA_Bsu succinate d 97.2 0.00023 5E-09 70.7 3.3 31 65-95 1-31 (603)
402 PLN02976 amine oxidase 97.2 0.00056 1.2E-08 72.3 6.0 37 61-97 692-728 (1713)
403 KOG2960 Protein involved in th 97.2 0.00016 3.6E-09 60.1 1.5 36 62-97 76-113 (328)
404 COG1053 SdhA Succinate dehydro 97.2 0.00036 7.8E-09 68.3 4.1 36 61-96 5-40 (562)
405 PRK08013 oxidoreductase; Provi 97.2 0.0043 9.4E-08 58.6 11.4 49 288-336 115-169 (400)
406 PRK08850 2-octaprenyl-6-methox 97.2 0.0045 9.7E-08 58.6 11.3 46 291-336 118-169 (405)
407 COG3573 Predicted oxidoreducta 97.1 0.00058 1.3E-08 60.9 4.7 35 61-95 4-38 (552)
408 PRK07512 L-aspartate oxidase; 97.1 0.00048 1E-08 67.2 4.7 35 60-96 7-41 (513)
409 KOG0404 Thioredoxin reductase 97.1 0.0044 9.6E-08 52.2 9.3 105 232-336 10-125 (322)
410 PLN02785 Protein HOTHEAD 97.1 0.00063 1.4E-08 67.3 4.9 35 61-96 54-88 (587)
411 PRK09897 hypothetical protein; 97.1 0.0065 1.4E-07 59.3 11.8 41 296-336 119-167 (534)
412 COG2072 TrkA Predicted flavopr 97.1 0.0073 1.6E-07 57.8 12.0 91 231-335 9-144 (443)
413 TIGR01372 soxA sarcosine oxida 97.1 0.0044 9.5E-08 65.3 11.3 93 230-336 163-287 (985)
414 PF13434 K_oxygenase: L-lysine 97.1 0.0013 2.8E-08 60.6 6.6 38 60-97 188-227 (341)
415 TIGR01984 UbiH 2-polyprenyl-6- 97.1 0.008 1.7E-07 56.4 11.9 51 286-336 107-163 (382)
416 COG2303 BetA Choline dehydroge 97.1 0.00072 1.6E-08 66.4 4.9 37 60-96 5-41 (542)
417 PRK06475 salicylate hydroxylas 97.0 0.006 1.3E-07 57.7 11.1 51 286-336 109-168 (400)
418 COG1635 THI4 Ribulose 1,5-bisp 97.0 0.009 2E-07 50.4 10.4 91 232-336 32-179 (262)
419 PRK07494 2-octaprenyl-6-methox 97.0 0.0059 1.3E-07 57.4 10.8 49 287-336 114-168 (388)
420 TIGR01810 betA choline dehydro 97.0 0.00059 1.3E-08 67.1 4.1 33 64-96 1-34 (532)
421 PRK10015 oxidoreductase; Provi 97.0 0.0065 1.4E-07 58.0 10.8 51 286-336 110-165 (429)
422 COG0445 GidA Flavin-dependent 97.0 0.0012 2.6E-08 62.7 5.6 91 232-336 6-159 (621)
423 COG1004 Ugd Predicted UDP-gluc 97.0 0.0043 9.3E-08 56.9 8.7 34 63-96 1-34 (414)
424 PRK05732 2-octaprenyl-6-methox 97.0 0.0091 2E-07 56.2 11.5 46 291-336 119-170 (395)
425 TIGR02023 BchP-ChlP geranylger 96.9 0.0089 1.9E-07 56.3 11.0 49 288-336 96-156 (388)
426 PRK06185 hypothetical protein; 96.9 0.0097 2.1E-07 56.4 11.2 51 286-336 110-170 (407)
427 KOG2495 NADH-dehydrogenase (ub 96.9 0.0047 1E-07 57.0 8.3 96 228-337 53-172 (491)
428 KOG1399 Flavin-containing mono 96.9 0.0079 1.7E-07 57.2 10.1 92 231-336 7-156 (448)
429 TIGR02028 ChlP geranylgeranyl 96.8 0.011 2.4E-07 55.8 10.9 48 289-336 98-161 (398)
430 PRK06183 mhpA 3-(3-hydroxyphen 96.8 0.01 2.3E-07 58.4 11.0 51 286-336 115-175 (538)
431 PRK06617 2-octaprenyl-6-methox 96.8 0.011 2.3E-07 55.4 10.6 49 287-336 107-161 (374)
432 TIGR03219 salicylate_mono sali 96.8 0.0098 2.1E-07 56.5 10.4 38 299-336 118-160 (414)
433 KOG2311 NAD/FAD-utilizing prot 96.8 0.0048 1E-07 57.7 7.4 39 298-336 139-187 (679)
434 TIGR01989 COQ6 Ubiquinone bios 96.7 0.017 3.7E-07 55.3 11.3 49 288-336 121-184 (437)
435 COG1251 NirB NAD(P)H-nitrite r 96.7 0.01 2.2E-07 58.6 9.5 94 232-336 5-114 (793)
436 PRK06996 hypothetical protein; 96.7 0.015 3.2E-07 55.0 10.7 50 285-334 116-173 (398)
437 COG0644 FixC Dehydrogenases (f 96.7 0.015 3.3E-07 54.9 10.7 99 232-345 5-161 (396)
438 PF06039 Mqo: Malate:quinone o 96.7 0.011 2.3E-07 55.7 9.1 34 61-94 2-37 (488)
439 PLN00093 geranylgeranyl diphos 96.7 0.02 4.3E-07 55.0 11.4 49 288-336 136-200 (450)
440 PRK08132 FAD-dependent oxidore 96.7 0.017 3.6E-07 57.1 11.2 51 286-336 127-186 (547)
441 TIGR01470 cysG_Nterm siroheme 96.6 0.003 6.5E-08 53.8 4.8 73 229-334 8-80 (205)
442 PRK08243 4-hydroxybenzoate 3-m 96.6 0.026 5.7E-07 53.2 11.7 49 288-336 107-164 (392)
443 PLN02661 Putative thiazole syn 96.6 0.025 5.5E-07 51.9 10.9 32 232-276 94-125 (357)
444 PF13241 NAD_binding_7: Putati 96.5 0.0032 6.9E-08 47.3 3.9 35 61-95 6-40 (103)
445 PF01946 Thi4: Thi4 family; PD 96.5 0.04 8.7E-07 46.7 10.6 91 232-336 19-166 (230)
446 PRK06481 fumarate reductase fl 96.5 0.023 5.1E-07 55.5 10.7 56 285-340 191-258 (506)
447 COG1148 HdrA Heterodisulfide r 96.5 0.0048 1E-07 57.8 5.5 67 231-311 125-206 (622)
448 TIGR02485 CobZ_N-term precorri 96.5 0.0017 3.6E-08 62.2 2.6 30 67-96 1-30 (432)
449 KOG2755 Oxidoreductase [Genera 96.5 0.0076 1.6E-07 52.1 6.2 90 233-336 2-105 (334)
450 KOG4254 Phytoene desaturase [C 96.4 0.0029 6.3E-08 58.7 3.7 49 284-332 264-318 (561)
451 KOG3851 Sulfide:quinone oxidor 96.4 0.0021 4.5E-08 57.1 2.6 99 232-342 41-153 (446)
452 PRK11445 putative oxidoreducta 96.4 0.045 9.8E-07 50.8 11.7 41 296-336 110-158 (351)
453 KOG1238 Glucose dehydrogenase/ 96.4 0.0068 1.5E-07 59.0 5.9 38 60-97 55-93 (623)
454 COG4529 Uncharacterized protei 96.4 0.028 6E-07 53.1 9.7 21 232-252 3-23 (474)
455 PF01210 NAD_Gly3P_dh_N: NAD-d 96.3 0.0042 9.2E-08 50.5 3.9 32 64-95 1-32 (157)
456 PF12831 FAD_oxidored: FAD dep 96.3 0.0041 8.9E-08 59.4 4.3 98 232-345 1-158 (428)
457 TIGR01470 cysG_Nterm siroheme 96.3 0.0063 1.4E-07 51.8 4.8 35 62-96 9-43 (205)
458 TIGR02360 pbenz_hydroxyl 4-hyd 96.3 0.04 8.6E-07 52.0 10.5 49 288-336 107-164 (390)
459 PLN02985 squalene monooxygenas 96.3 0.046 9.9E-07 53.5 11.2 51 286-336 149-209 (514)
460 PRK14106 murD UDP-N-acetylmura 96.2 0.015 3.2E-07 55.9 7.7 80 230-339 5-85 (450)
461 PRK06126 hypothetical protein; 96.2 0.031 6.8E-07 55.1 10.1 51 286-336 128-189 (545)
462 KOG0405 Pyridine nucleotide-di 96.2 0.01 2.2E-07 53.4 5.8 103 60-186 187-291 (478)
463 COG1206 Gid NAD(FAD)-utilizing 96.2 0.0044 9.5E-08 55.3 3.4 33 62-94 3-35 (439)
464 KOG1346 Programmed cell death 96.2 0.01 2.2E-07 54.6 5.8 101 61-185 346-452 (659)
465 PRK06719 precorrin-2 dehydroge 96.1 0.0085 1.8E-07 48.7 4.6 34 61-94 12-45 (157)
466 COG0569 TrkA K+ transport syst 96.1 0.0058 1.3E-07 52.8 3.8 34 63-96 1-34 (225)
467 PRK07538 hypothetical protein; 96.1 0.047 1E-06 51.8 10.3 22 232-253 2-23 (413)
468 PF02737 3HCDH_N: 3-hydroxyacy 96.1 0.0068 1.5E-07 50.5 3.8 33 64-96 1-33 (180)
469 PF03721 UDPG_MGDP_dh_N: UDP-g 96.0 0.0061 1.3E-07 51.0 3.3 34 63-96 1-34 (185)
470 COG3634 AhpF Alkyl hydroperoxi 96.0 0.029 6.2E-07 50.6 7.3 102 228-334 209-324 (520)
471 KOG1800 Ferredoxin/adrenodoxin 95.9 0.04 8.8E-07 50.3 8.3 88 232-336 22-121 (468)
472 PRK02705 murD UDP-N-acetylmura 95.9 0.008 1.7E-07 58.0 4.2 34 64-97 2-35 (459)
473 PRK06718 precorrin-2 dehydroge 95.9 0.018 4E-07 48.9 5.7 33 229-275 9-41 (202)
474 KOG0042 Glycerol-3-phosphate d 95.9 0.0041 8.9E-08 59.0 1.9 38 60-97 65-102 (680)
475 PRK08401 L-aspartate oxidase; 95.9 0.11 2.4E-06 50.2 11.8 51 285-336 121-176 (466)
476 PRK05562 precorrin-2 dehydroge 95.9 0.017 3.6E-07 49.6 5.4 53 229-304 24-76 (223)
477 KOG3855 Monooxygenase involved 95.8 0.0083 1.8E-07 55.2 3.6 34 61-94 35-72 (481)
478 PF02558 ApbA: Ketopantoate re 95.8 0.034 7.5E-07 44.6 6.9 75 233-334 1-78 (151)
479 COG1086 Predicted nucleoside-d 95.8 0.035 7.7E-07 53.4 7.7 95 228-341 248-343 (588)
480 PRK06718 precorrin-2 dehydroge 95.8 0.014 3.1E-07 49.5 4.6 34 61-94 9-42 (202)
481 PRK14106 murD UDP-N-acetylmura 95.7 0.013 2.9E-07 56.3 4.6 34 62-95 5-38 (450)
482 PRK08255 salicylyl-CoA 5-hydro 95.6 0.038 8.2E-07 56.8 7.9 34 232-277 2-35 (765)
483 KOG2614 Kynurenine 3-monooxyge 95.5 0.078 1.7E-06 49.1 8.3 31 232-276 4-34 (420)
484 PF01262 AlaDh_PNT_C: Alanine 95.4 0.019 4.1E-07 47.3 4.0 35 61-95 19-53 (168)
485 PRK04148 hypothetical protein; 95.4 0.018 3.8E-07 45.1 3.5 34 62-96 17-50 (134)
486 PF13450 NAD_binding_8: NAD(P) 95.3 0.031 6.8E-07 38.3 4.3 31 235-279 1-31 (68)
487 KOG4716 Thioredoxin reductase 95.3 0.012 2.7E-07 52.7 2.7 102 62-185 198-303 (503)
488 TIGR03862 flavo_PP4765 unchara 95.3 0.1 2.2E-06 48.7 8.8 70 277-346 77-162 (376)
489 PF13478 XdhC_C: XdhC Rossmann 95.2 0.021 4.6E-07 45.1 3.5 32 65-96 1-32 (136)
490 PRK07819 3-hydroxybutyryl-CoA 95.0 0.032 7E-07 50.1 4.5 34 63-96 6-39 (286)
491 PF02558 ApbA: Ketopantoate re 94.9 0.034 7.4E-07 44.7 4.1 31 65-95 1-31 (151)
492 TIGR00518 alaDH alanine dehydr 94.9 0.039 8.4E-07 51.6 4.9 35 61-95 166-200 (370)
493 PRK06129 3-hydroxyacyl-CoA deh 94.9 0.028 6E-07 51.2 3.9 34 63-96 3-36 (308)
494 PLN02572 UDP-sulfoquinovose sy 94.9 0.053 1.1E-06 52.0 5.9 34 60-93 45-79 (442)
495 PRK07066 3-hydroxybutyryl-CoA 94.9 0.041 8.9E-07 50.2 4.8 34 63-96 8-41 (321)
496 PF01488 Shikimate_DH: Shikima 94.8 0.043 9.3E-07 43.4 4.3 35 61-95 11-46 (135)
497 PRK09424 pntA NAD(P) transhydr 94.8 0.031 6.7E-07 54.1 4.1 36 61-96 164-199 (509)
498 COG3486 IucD Lysine/ornithine 94.8 0.15 3.2E-06 47.2 8.1 42 138-185 299-343 (436)
499 PRK07530 3-hydroxybutyryl-CoA 94.7 0.041 8.8E-07 49.7 4.4 35 62-96 4-38 (292)
500 PRK06249 2-dehydropantoate 2-r 94.7 0.045 9.7E-07 50.0 4.7 34 62-95 5-38 (313)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=2.5e-41 Score=300.75 Aligned_cols=288 Identities=52% Similarity=0.848 Sum_probs=263.6
Q ss_pred CCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 58 ~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
....+++|||+|+|++|.+.++.|...-++|+||+|++++.|+|+++..+.|..+..++.+++..+.... ..+++++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k--~~~~~y~e 128 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKK--NGEVKYLE 128 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhcc--CCCceEEe
Confidence 4456789999999999999999999999999999999999999999999999999999999998886533 33788999
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+++..+|++.+.+++.....+. .++.+.+.||+||+|+|+.+..+++||..+++....+++++.+++.++..+++..
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~---~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a 205 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADS---SDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA 205 (491)
T ss_pred cccEeecccccEEEEeeeccCC---CcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999998765443 1456799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~ 296 (351)
+.|+...+++++..+++|||||++|+|+|.+|.++...|+++.||+.++..+||+++..+ +|+.|+..+.+..++.+.+
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999986 8999999999999999999
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCC----cEEeccEEEEecCCCCccccccCCCCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 350 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g----~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~G 350 (351)
.||.+..++ |+.++++.+..+.+ +++++.+++|+||..|.++.+.|--.+++.|
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~ 344 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQG 344 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccC
Confidence 999999995 99999988887654 5799999999999999988888766666655
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=3.7e-39 Score=294.55 Aligned_cols=272 Identities=36% Similarity=0.567 Sum_probs=238.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
++++|||||||++||.+|..|.+.. .+|++||+++++.|.|+++....|.........+++.. +....++.++.+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~---~~~~~~v~~~~~ 78 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL---LRKSGNVQFVQG 78 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHH---hcccCceEEEEE
Confidence 3578999999999999999999864 89999999999999999999999999888777777666 333446999999
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|++||++.+.+.+.. +. .+.||.||+|+|+.+.++++||+.++++...+++++.++++++...|...+
T Consensus 79 ~V~~ID~~~k~V~~~~---~~--------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~ 147 (405)
T COG1252 79 EVTDIDRDAKKVTLAD---LG--------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147 (405)
T ss_pred EEEEEcccCCEEEeCC---Cc--------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998843 34 899999999999999999999999999999999999999999987777776
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhc
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (351)
.+..+ .....++|||||++|+|+|.+|.++..+.+.. |.....+.+|+++++. +++|.+++++.+..++.|++.
T Consensus 148 ~~~~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 148 QEEDD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL 222 (405)
T ss_pred ccccc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC
Confidence 43211 23457999999999999999999987655554 4443447899999998 599999999999999999999
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcE-EeccEEEEecCCCCccccccC-CCCCCCCCC
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKSL-DLPKSPGGR 351 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~-gl~~~~~G~ 351 (351)
||++++++ |+++++++|++++|.+ +++|.+|||+|.+++++++++ |++.|+.||
T Consensus 223 GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Gr 279 (405)
T COG1252 223 GVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGR 279 (405)
T ss_pred CCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCC
Confidence 99999996 9999999999999985 999999999999999999995 888888886
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=292.95 Aligned_cols=280 Identities=45% Similarity=0.790 Sum_probs=234.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
+.+++|||||||+||+.+|..|.+.+++|+|||+++++.|.|+++....+...+.....++... ....++.++.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~~~~~i~~~ 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA----LAKLPNRYLRAV 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH----hccCCeEEEEEE
Confidence 4557999999999999999999888899999999999999999888877766655444443333 233468899999
Q ss_pred eeeEeCCCCEEEEEee-------cCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHH
Q 018704 140 CAGIDTDNHVVHCETV-------TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (351)
|++||++.+.+.+... .++. ++.||+||||||+.|..+++||.+++.+..+++.++..+++.+..
T Consensus 84 V~~Id~~~~~v~~~~~~~~~~~~~~g~--------~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~ 155 (424)
T PTZ00318 84 VYDVDFEEKRVKCGVVSKSNNANVNTF--------SVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQ 155 (424)
T ss_pred EEEEEcCCCEEEEecccccccccCCce--------EecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999987321 1233 799999999999999999999998888889999999999888876
Q ss_pred hhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHH
Q 018704 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYAT 291 (351)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~ 291 (351)
++.....|....+..++.++++|||||.+|+|+|.+|..+..+...+.|+...++.+|+++++. ++++.+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~ 235 (424)
T PTZ00318 156 CIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQ 235 (424)
T ss_pred HHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHH
Confidence 6555554444444455567999999999999999999987766666667776778999999997 578889999999999
Q ss_pred HHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCccccccCCCCCCCCCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~G~ 351 (351)
+.|++.||+++.+. |.++.++.+++++|+++++|.+|+++|.+|+++++.++++++++|+
T Consensus 236 ~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~ 296 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGR 296 (424)
T ss_pred HHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCc
Confidence 99999999999995 9999999999999999999999999999999999999988877663
No 4
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.9e-32 Score=260.61 Aligned_cols=249 Identities=19% Similarity=0.290 Sum_probs=194.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccch-hhhhhhcccccccccccchhccchhhhcCCCeEEE-EE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LS 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 138 (351)
++|||||||+||++||..|++. +.+|+|||+++++.|.+ .++....+...... ..+......+....++.++ ..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~--~~~~~~~~~~~~~~~i~v~~~~ 79 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRK--YALAYTPEKFYDRKQITVKTYH 79 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHH--HcccCCHHHHHHhCCCEEEeCC
Confidence 4899999999999999999875 67899999999888774 33333322221110 1111111223344577765 47
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|+.||.+.+.+.+.+..+++ ...+.||+||||||+.|+.|++++ +.+++.+++.++..+.+.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~~~~------~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------ 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKTNE------QFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------ 145 (438)
T ss_pred EEEEEECCCCEEEEEECCCCc------EEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh------
Confidence 999999999999886532222 235799999999999998887664 566777888888877776531
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhc
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++. .+++.+++++.+.+.+.+++.
T Consensus 146 ---------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~ 202 (438)
T PRK13512 146 ---------NQVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKR 202 (438)
T ss_pred ---------cCCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhc
Confidence 12359999999999999999998877 899999997 467788999999999999999
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
||+++.+. |+++++..+++.+|+++++|.|++|+|++|+ ++++..|++++++|
T Consensus 203 gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G 257 (438)
T PRK13512 203 EIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKG 257 (438)
T ss_pred CCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCC
Confidence 99999995 9999888899988989999999999999999 88998899888766
No 5
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=5.5e-32 Score=252.17 Aligned_cols=254 Identities=22% Similarity=0.387 Sum_probs=200.3
Q ss_pred cEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 64 RVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
+|||||||+||+.+|..|++ .+.+|+|||+++++.|.+.++....+......+..... .+....++.++.++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~gv~~~~~~v 76 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLR----RLARQAGARFVIAEA 76 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHH----HHHHhcCCEEEEEEE
Confidence 59999999999999999964 46899999999999888877766555444333333322 223345788999999
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (351)
+.+|.+.+.+.+ .+++ ++.||+||||||+.|..|.+||..++++.+++..++..+.+.+...+.. .
T Consensus 77 ~~id~~~~~V~~---~~g~--------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 142 (364)
T TIGR03169 77 TGIDPDRRKVLL---ANRP--------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADA--P- 142 (364)
T ss_pred EEEecccCEEEE---CCCC--------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhc--C-
Confidence 999999998776 3555 7999999999999999999999777888888888877755554322110 0
Q ss_pred CCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcE
Q 018704 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (351)
Q Consensus 221 ~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (351)
...++++|||+|.+|+|+|..|.+... ......+|+++....+++.+++.+.+.+.+.+++.||+
T Consensus 143 -------~~~~~vvVvG~G~~g~E~A~~l~~~~~--------~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~ 207 (364)
T TIGR03169 143 -------PGTKRLAVVGGGAAGVEIALALRRRLP--------KRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIE 207 (364)
T ss_pred -------CCCceEEEECCCHHHHHHHHHHHHHHH--------hcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 123599999999999999999976431 10112589999555677778888999999999999999
Q ss_pred EEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCccccccCCCCCCCCC
Q 018704 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 350 (351)
Q Consensus 301 ~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~G 350 (351)
++.+. +++++.+.+.+.+|.++++|.||+|+|.+|++++...+++++++|
T Consensus 208 v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g 258 (364)
T TIGR03169 208 VHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDG 258 (364)
T ss_pred EEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCC
Confidence 99995 999988889999999999999999999999987877788877665
No 6
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.98 E-value=1.4e-30 Score=262.50 Aligned_cols=243 Identities=21% Similarity=0.386 Sum_probs=192.6
Q ss_pred CCcEEEECCchhHHHHHHhhhc----cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+++|||||+|+||+.+|..|++ .+++|+||++++++.|.+.......+..... .+......+....++.++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~----~l~~~~~~~~~~~gI~~~~ 78 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAE----ELSLVREGFYEKHGIKVLV 78 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHH----HccCCCHHHHHhCCCEEEc
Confidence 3589999999999999999975 3589999999999887653222222211111 1111122233445788776
Q ss_pred E-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 ~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
. .|+.+|.+.+.+.+ .++. .+.||+||||||+.|..|++||.+ ..++.++++.++..++..+
T Consensus 79 g~~V~~Id~~~~~V~~---~~G~--------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~----- 142 (847)
T PRK14989 79 GERAITINRQEKVIHS---SAGR--------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA----- 142 (847)
T ss_pred CCEEEEEeCCCcEEEE---CCCc--------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH-----
Confidence 5 69999998887765 3455 899999999999999999999986 4567788899888887664
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQ 293 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~ 293 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++.+ +++ .++++..+.+.+.
T Consensus 143 ------------~~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~~ 196 (847)
T PRK14989 143 ------------RRSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRRK 196 (847)
T ss_pred ------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHHH
Confidence 33469999999999999999999887 8999999975 454 5889999999999
Q ss_pred hhhcCcEEEcCe-EEEEeCC------eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~------~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+++.||+++++. ++++..+ .+.+.||+++++|.||+|+|++|+ .+++..|++++++|
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G 261 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRG 261 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCC
Confidence 999999999995 8888542 467889999999999999999999 78888899888765
No 7
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=6.4e-30 Score=240.47 Aligned_cols=239 Identities=18% Similarity=0.312 Sum_probs=183.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccc-hhhhh-hhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLAS-TCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
..+|||||||+||++||..|++.|. +|+|++++++++|. +.+.. ...+.. .... .+ ....+....++.++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~-~~~~--~~--~~~~~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDS-PQLQ--QV--LPANWWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCC-cccc--cc--CCHHHHHHCCCEEEc
Confidence 3689999999999999999999876 69999999888774 33332 222211 1100 01 111222335777776
Q ss_pred E-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 ~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
. .|..+|.+.+.+.+ .++. .+.||+||||||+.|+.+++++.. ++++++++..++..+++.+
T Consensus 78 g~~V~~id~~~~~v~~---~~g~--------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~----- 141 (396)
T PRK09754 78 GVTIKTLGRDTRELVL---TNGE--------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL----- 141 (396)
T ss_pred CCEEEEEECCCCEEEE---CCCC--------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHh-----
Confidence 5 78999999888766 3555 899999999999999887766543 5677788888888887764
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQ 293 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~ 293 (351)
..+++++|||||.+|+|+|..|.+.+ .+|+++++.+ +++ .+++.+.+.+.+.
T Consensus 142 ------------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 195 (396)
T PRK09754 142 ------------QPERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQR 195 (396)
T ss_pred ------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHH
Confidence 23469999999999999999998876 8999999974 554 3677888889999
Q ss_pred hhhcCcEEEcCe-EEEEeCC---eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~---~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
+++.||+++.+. |++++.+ .+.+.+|+++++|.||+|+|.+|+ .|++.+|++.+
T Consensus 196 l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~ 254 (396)
T PRK09754 196 HQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA 254 (396)
T ss_pred HHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC
Confidence 999999999995 8888753 356788999999999999999999 67777777653
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=7.1e-30 Score=244.08 Aligned_cols=249 Identities=21% Similarity=0.308 Sum_probs=185.5
Q ss_pred cEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEEE-EEE
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSH 139 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 139 (351)
+|||||||+||+++|..|++.+ .+|+|||+++.+.|.+. ++....+... .....+......+ ...++.++ ..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~gv~~~~~~~ 78 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFD--DPNTMIARTPEEF-IKSGIDVKTEHE 78 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccC--CHHHhhcCCHHHH-HHCCCeEEecCE
Confidence 7999999999999999999864 58999999998876542 2221111111 0011111122222 23467765 569
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
|+.++.+.+.+.+....++. ...+.||+||||||+.|..|++||.+ ++++++.++.++..+++.+..
T Consensus 79 V~~id~~~~~v~~~~~~~~~------~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~------ 146 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGS------IFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD------ 146 (444)
T ss_pred EEEEECCCCEEEEEECCCCC------EEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh------
Confidence 99999999999886433343 12344999999999999999999986 567777788777777765421
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~ 296 (351)
...++++|||||.+|+|+|..+.+.+ .+|+++++.+ +++ .+++++.+.+.+.+++
T Consensus 147 ---------~~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~ 203 (444)
T PRK09564 147 ---------EEIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEELRE 203 (444)
T ss_pred ---------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHHHH
Confidence 23469999999999999999998776 8899999874 555 5789999999999999
Q ss_pred cCcEEEcCe-EEEEeCCe---EEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~---v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.++ |.+++.+. ....++.++++|.||+|+|++|+ +++++.|++++++|
T Consensus 204 ~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g 262 (444)
T PRK09564 204 NGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNG 262 (444)
T ss_pred CCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCC
Confidence 999999995 98886532 22234557999999999999999 89999999887666
No 9
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=7.8e-30 Score=238.56 Aligned_cols=238 Identities=21% Similarity=0.328 Sum_probs=184.4
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcccc-chhhhhhhcccccccccccchhccchhhhcCCCeEEEE-E
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (351)
++|||||||+||+++|..|++. ..+|+||++++...| .+.+.....+......+ .......+....++.++. .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~gv~~~~~~ 79 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDL---TRQSAGEFAEQFNLRLFPHT 79 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHh---hcCCHHHHHHhCCCEEECCC
Confidence 6899999999999999999874 567999999987766 35444433332221111 111122233445777764 6
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|+.+|.+.+.+.+ ++. .+.||+||||||+.|..|++||.+. ++.++++.++..+.+.+
T Consensus 80 ~V~~id~~~~~v~~----~~~--------~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~-------- 138 (377)
T PRK04965 80 WVTDIDAEAQVVKS----QGN--------QWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL-------- 138 (377)
T ss_pred EEEEEECCCCEEEE----CCe--------EEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh--------
Confidence 89999998887764 344 8999999999999999999999744 67777887877766654
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC-CcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-FDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~l~~ 296 (351)
...++++|||||++|+|+|..|.+.+ .+|+++++.+ +++. +++.+.+.+.+.+++
T Consensus 139 ---------~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~ 195 (377)
T PRK04965 139 ---------RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTE 195 (377)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHh
Confidence 23469999999999999999998766 8999999974 4444 578888899999999
Q ss_pred cCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.||+++.+. |++++.+ .+.+.+|+++++|.||+|+|.+|+ .+++.+|++.+
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~ 252 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN 252 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC
Confidence 999999984 9888753 467788999999999999999999 78888888764
No 10
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=8.2e-30 Score=238.86 Aligned_cols=243 Identities=23% Similarity=0.310 Sum_probs=177.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----------hhhhhhh-----------ccc------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----------PLLASTC-----------VGT------LEF 113 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----------~~~~~~~-----------~~~------~~~ 113 (351)
.++|+||||+||+|..||.++++.|.+|.|+|+...+... .++.... .|. .++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 4699999999999999999999999999999998532111 0000000 000 011
Q ss_pred cccc-------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 114 RSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 114 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+. .........+....++.++.+...-++ .+++.+... +.+ ++.++++|||||++|+.|+
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~-~~~--------~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE-DKE--------TITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC-Cce--------EEEeCEEEEcCCCCCcCCC
Confidence 1111 111112223344456777777666555 677776432 223 9999999999999999999
Q ss_pred CCCcccc-ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++++++. .+..++. +.+..+|. +++|||||.+|+|+|..+.++|
T Consensus 152 ~~~~~~~~~~~s~~~-------------l~~~~lP~----------~lvIiGgG~IGlE~a~~~~~LG------------ 196 (454)
T COG1249 152 GPGIDGARILDSSDA-------------LFLLELPK----------SLVIVGGGYIGLEFASVFAALG------------ 196 (454)
T ss_pred CCCCCCCeEEechhh-------------cccccCCC----------EEEEECCCHHHHHHHHHHHHcC------------
Confidence 9998643 2333222 12225664 9999999999999999999998
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCc--EEeccEEEEecCCCCc-
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPS- 336 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~--~~~~D~vi~a~G~~p~- 336 (351)
.+||++++. .++|.+|+++.+.+.+.|++.|++++++. ++.++.+ .+.+++|. ++++|.|++|+|++||
T Consensus 197 --~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 197 --SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred --CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 999999997 68999999999999999999999999995 8888653 36667776 6899999999999999
Q ss_pred c--ccccCCCCCCCCCC
Q 018704 337 T--LVKSLDLPKSPGGR 351 (351)
Q Consensus 337 ~--~~~~~gl~~~~~G~ 351 (351)
+ -+++.|+++|++|.
T Consensus 275 ~~LgLe~~Gv~~~~rg~ 291 (454)
T COG1249 275 DGLGLENAGVELDDRGF 291 (454)
T ss_pred CCCChhhcCceECCCCC
Confidence 4 46778899988763
No 11
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.9e-29 Score=254.38 Aligned_cols=237 Identities=21% Similarity=0.380 Sum_probs=189.2
Q ss_pred EEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccch-hhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 65 VVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
|||||+|+||+++|..|++ .+++|+|||+++++.|.+ .++....+......+.....+ +....++.++.. +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~----~~~~~gv~~~~g~~ 76 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKD----WYEKHGITLYTGET 76 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHH----HHHHCCCEEEcCCe
Confidence 6999999999999999876 357999999999987763 344444333333322222222 223357887764 8
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
|+.||++.+.+.+ .++. .+.||+||||||+.|+.|++||.+ ++++.++++.++..+++.+
T Consensus 77 V~~Id~~~k~V~~---~~g~--------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~-------- 137 (785)
T TIGR02374 77 VIQIDTDQKQVIT---DAGR--------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA-------- 137 (785)
T ss_pred EEEEECCCCEEEE---CCCc--------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh--------
Confidence 9999999888766 3555 899999999999999999999986 4677788888888877754
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~ 296 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++.+ +++ .+++.+.+.+.+.+++
T Consensus 138 ---------~~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 138 ---------QRFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 34469999999999999999999877 8999999874 443 4788889999999999
Q ss_pred cCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.||+++++. ++++.++ +|.+.||+++++|.||+|+|++|+ .+++.+|++++
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~ 251 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN 251 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC
Confidence 999999995 8888653 578899999999999999999999 78888888765
No 12
>PRK06116 glutathione reductase; Validated
Probab=99.96 E-value=8.1e-29 Score=236.91 Aligned_cols=236 Identities=21% Similarity=0.315 Sum_probs=168.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------h--------hhhhh------hccc------cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P--------LLAST------CVGT------LEFR 114 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~--------~~~~~------~~~~------~~~~ 114 (351)
.+||+||||||||++||..|++.|++|+|||+.. +... | .+... ..+. ..+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 5899999999999999999999999999999862 2110 0 00000 0000 0000
Q ss_pred ccccc-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
.+... +...........++.++.+.+..++. +.+.+ ++. .+.||+||||||+.|+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~----~g~--------~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV----NGE--------RYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 00000 01111112334578888888877763 55554 344 79999999999999999999
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
||.+ .+++..++. ..... .++++|||+|.+|+|+|..|.+++
T Consensus 149 ~g~~-~~~~~~~~~-------------~~~~~----------~~~vvViGgG~~g~E~A~~l~~~g-------------- 190 (450)
T PRK06116 149 PGAE-YGITSDGFF-------------ALEEL----------PKRVAVVGAGYIAVEFAGVLNGLG-------------- 190 (450)
T ss_pred CCcc-eeEchhHhh-------------Ccccc----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9873 333222111 11112 249999999999999999998877
Q ss_pred cEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCc-cc-
Q 018704 268 IHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 268 ~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++.+ +++.+++++.+.+.+.+++.||+++.+. |++++. + .+.+.+|+++++|.||+|+|++|+ ++
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l 270 (450)
T PRK06116 191 SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL 270 (450)
T ss_pred CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence 8999999974 6788899999999999999999999995 988863 2 356678888999999999999999 53
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 271 ~l~~~g~~~~~~G 283 (450)
T PRK06116 271 GLENAGVKLNEKG 283 (450)
T ss_pred CchhcCceECCCC
Confidence 566778777666
No 13
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.96 E-value=9.7e-29 Score=235.78 Aligned_cols=242 Identities=19% Similarity=0.277 Sum_probs=168.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhc----------ccccccccc-------cchh-cc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV----------GTLEFRSVA-------EPIA-RI 123 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~----------~~~~~~~~~-------~~~~-~~ 123 (351)
.+||+||||||||++||.+|++.|.+|+|||+.+......+....|. ....+.... ..++ ..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 48999999999999999999999999999998753211111111110 000110000 0010 01
Q ss_pred chhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc--cccccCCHH
Q 018704 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE--NATFLREVH 201 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~~~~~~~~ 201 (351)
...+....++.++.+++..++.. .+.+.. .++. ..+.||+||||||+.|..|++||+++ .+++. .
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~-~~g~-------~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~---~ 149 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNH--SLRVHR-PEGN-------LEIHGEKIFINTGAQTVVPPIPGITTTPGVYDS---T 149 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCC--EEEEEe-CCCe-------EEEEeCEEEEcCCCcCCCCCCCCccCCCCEECh---h
Confidence 12233445788888888888754 444433 2331 26899999999999999999999742 22222 1
Q ss_pred HHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC
Q 018704 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 280 (351)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~ 280 (351)
+ +.. +.. ..++++|||+|.+|+|+|..|.+++ .+|++++++ .+++
T Consensus 150 ~---~~~-------~~~----------~~~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~ 195 (441)
T PRK08010 150 G---LLN-------LKE----------LPGHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLP 195 (441)
T ss_pred H---hhc-------ccc----------cCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCC
Confidence 1 111 111 2249999999999999999999877 899999997 4778
Q ss_pred CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEEec-CCcEEeccEEEEecCCCCc-cc--cccCCCCCCCCC
Q 018704 281 SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 281 ~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~~~-~g~~~~~D~vi~a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
.+++++.+.+.+.+++.||+++.+. |++++. +.+.+. ++.++++|.|++|+|.+|+ ++ ++.+|++++++|
T Consensus 196 ~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G 272 (441)
T PRK08010 196 REDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERG 272 (441)
T ss_pred CcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCC
Confidence 8889999999999999999999994 988864 344432 2336899999999999999 44 456778877666
No 14
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.96 E-value=1.2e-28 Score=234.87 Aligned_cols=241 Identities=19% Similarity=0.327 Sum_probs=165.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc-ccchhhhhhhcc----------cccccccccc-------hhcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPLLASTCVG----------TLEFRSVAEP-------IARI 123 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~-------~~~~ 123 (351)
.+||+||||||||++||..|++.|.+|+|||+++.. ... ++...|.- ...+..+... +...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~-c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGT-CINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCccccee-eecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999997642 111 00000100 0011111110 1111
Q ss_pred chhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc--cccccCCHH
Q 018704 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE--NATFLREVH 201 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~~~~~~~~ 201 (351)
........++.++...+..+ +.+.+.+....+. ..+.||+||||||+.|+.|++||.++ .+++. .
T Consensus 82 ~~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~~--------~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~---~ 148 (438)
T PRK07251 82 NYAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDEK--------IELTAETIVINTGAVSNVLPIPGLADSKHVYDS---T 148 (438)
T ss_pred HHHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCCc--------EEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEch---H
Confidence 11223345788887776544 4566766431112 27999999999999999999999742 23322 1
Q ss_pred HHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC
Q 018704 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 280 (351)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~ 280 (351)
++..+ .. ..++++|||||++|+|+|..+.+++ .+|+++++. .+++
T Consensus 149 ~~~~~----------~~----------~~~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~ 194 (438)
T PRK07251 149 GIQSL----------ET----------LPERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILP 194 (438)
T ss_pred HHhcc----------hh----------cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCC
Confidence 22111 11 2249999999999999999998876 899999997 4777
Q ss_pred CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--eEE-ecCCcEEeccEEEEecCCCCc-cc--cccCCCCCCCCC
Q 018704 281 SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 281 ~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~v~-~~~g~~~~~D~vi~a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
..++++.+.+.+.+++.||+++.+. |++++.+ ++. ..+|+++++|.||+|+|++|+ +. ++..+++.+++|
T Consensus 195 ~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g 271 (438)
T PRK07251 195 REEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERG 271 (438)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCC
Confidence 7888999999999999999999994 8888643 343 346778999999999999999 43 333455555544
No 15
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.96 E-value=1.2e-28 Score=235.14 Aligned_cols=236 Identities=19% Similarity=0.252 Sum_probs=165.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----hhhh------hh----------hcccc-------ccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLA------ST----------CVGTL-------EFR 114 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----~~~~------~~----------~~~~~-------~~~ 114 (351)
++||+||||||+|++||..|++.|.+|+|||+.. +... .+.+ .. ..|.. .+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 4899999999999999999999999999999853 1111 0000 00 00000 000
Q ss_pred cccc-------chhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC-C
Q 018704 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF-G 186 (351)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p-~ 186 (351)
.+.. .+...........++.++.+..... +.+.+.+ ++. .+.||+||||||+.|+.| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~--~~~~v~v----~~~--------~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFT--KDGTVEV----NGR--------DYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 0000 1111112223344677777665433 3455544 333 799999999999999999 8
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
+||.+ ...+. ++.. .+...| ++++|||||++|+|+|..|.+++
T Consensus 147 i~g~~-~~~~~---~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g------------- 189 (450)
T TIGR01421 147 IPGAE-LGTDS---DGFF----------ALEELP----------KRVVIVGAGYIAVELAGVLHGLG------------- 189 (450)
T ss_pred CCCCc-eeEcH---HHhh----------CccccC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 99863 22211 1111 111223 49999999999999999999887
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecCC-cEEeccEEEEecCCCCc-c
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~g-~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. ++++.+++++.+.+.+.+++.||+++.+. |++++.+ .+.+.+| .++++|.||+|+|++|+ +
T Consensus 190 -~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 190 -SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999997 57888999999999999999999999994 8888642 3566677 56999999999999999 5
Q ss_pred c--cccCCCCCCCCC
Q 018704 338 L--VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~--~~~~gl~~~~~G 350 (351)
+ ++.+|++++++|
T Consensus 269 ~l~l~~~g~~~~~~G 283 (450)
T TIGR01421 269 GLGLENVGIKLNEKG 283 (450)
T ss_pred cCCccccCcEECCCC
Confidence 4 577788887766
No 16
>PLN02507 glutathione reductase
Probab=99.96 E-value=1.4e-28 Score=236.80 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=171.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCC---------Cccccch----hhh------hhh----------ccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTP----LLA------STC----------VGT 110 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~---------~~~~~~~----~~~------~~~----------~~~ 110 (351)
..++||+||||||+|++||.++++.|.+|+|||+. ..+.... +.+ ... .|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 34689999999999999999999999999999962 2221110 000 000 001
Q ss_pred c-------cccccccc-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEE
Q 018704 111 L-------EFRSVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (351)
Q Consensus 111 ~-------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lvi 176 (351)
. .+..+... +......+....++.++.+++..++.....+.. .+++ ...+.||+|||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~---~~g~------~~~~~~d~LII 173 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQ---LDGT------KLRYTAKHILI 173 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEe---CCCc------EEEEEcCEEEE
Confidence 0 00000000 011111233446788999998888766444432 2333 12689999999
Q ss_pred ecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHH
Q 018704 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (351)
Q Consensus 177 AtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~ 256 (351)
|||+.|..|++||.+ ... +..++..+. ...++++|||||.+|+|+|..+..++
T Consensus 174 ATGs~p~~p~ipG~~-~~~---~~~~~~~l~--------------------~~~k~vvVIGgG~ig~E~A~~l~~~G--- 226 (499)
T PLN02507 174 ATGSRAQRPNIPGKE-LAI---TSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRGMG--- 226 (499)
T ss_pred ecCCCCCCCCCCCcc-cee---chHHhhhhh--------------------hcCCeEEEECCcHHHHHHHHHHHHcC---
Confidence 999999999999863 222 222222211 11249999999999999999998877
Q ss_pred HHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEe
Q 018704 257 VRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWS 330 (351)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a 330 (351)
.+|+++++.+ +++.+++++.+.+.+.+++.||+++.+. |++++. ++ +.+.+|+++++|.|++|
T Consensus 227 -----------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a 295 (499)
T PLN02507 227 -----------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFA 295 (499)
T ss_pred -----------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEe
Confidence 8999999974 7788999999999999999999999994 888864 33 55567888999999999
Q ss_pred cCCCCc-cc--cccCCCCCCCCC
Q 018704 331 TGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 331 ~G~~p~-~~--~~~~gl~~~~~G 350 (351)
+|++|+ .+ ++.+|++++++|
T Consensus 296 ~G~~pn~~~l~l~~~gl~~~~~G 318 (499)
T PLN02507 296 TGRAPNTKRLNLEAVGVELDKAG 318 (499)
T ss_pred ecCCCCCCCCCchhhCcEECCCC
Confidence 999999 54 567788877766
No 17
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.96 E-value=9.8e-29 Score=235.76 Aligned_cols=238 Identities=19% Similarity=0.305 Sum_probs=169.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhh-----------hh-----ccc------ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS-----------TC-----VGT------LEFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~-----------~~-----~~~------~~~~~ 115 (351)
++||+||||||||++||..+++.|.+|+|+|+.. +...- +.+. .. .+. ..+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 4899999999999999999999999999999842 21110 0000 00 000 00000
Q ss_pred c-------ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 116 V-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 116 ~-------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
+ ...+...........++.++.+++..++.. .+.+. .++. .+.||+||||||+.|..|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~--~~g~--------~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVL--QDGT--------TYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEe--cCCe--------EEEcCEEEEecCCcCCCCCCC
Confidence 0 011112222234456788888888888764 44432 2344 799999999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
|.+ ...+. .+... +.. ..++++|||+|.+|+|+|..+.+++ .
T Consensus 149 G~~-~~~~~---~~~~~----------l~~----------~~~~vvVIGgG~~g~E~A~~l~~~G--------------~ 190 (446)
T TIGR01424 149 GHE-LGITS---NEAFH----------LPT----------LPKSILILGGGYIAVEFAGIWRGLG--------------V 190 (446)
T ss_pred Ccc-ceech---HHhhc----------ccc----------cCCeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 863 22221 12111 111 2349999999999999999998877 8
Q ss_pred EEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc-cc--c
Q 018704 269 HVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TL--V 339 (351)
Q Consensus 269 ~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~-~~--~ 339 (351)
+|+++++.+ +++.+++++.+.+.+.+++.||+++.+. |.+++. + .+.+.+|+++++|.||+|+|++|+ +. +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l 270 (446)
T TIGR01424 191 QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL 270 (446)
T ss_pred eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc
Confidence 999999974 6788899999999999999999999994 888863 2 355667888999999999999999 43 5
Q ss_pred ccCCCCCCCCC
Q 018704 340 KSLDLPKSPGG 350 (351)
Q Consensus 340 ~~~gl~~~~~G 350 (351)
+.+|++++++|
T Consensus 271 ~~~g~~~~~~G 281 (446)
T TIGR01424 271 EAAGVELNDAG 281 (446)
T ss_pred cccCeEECCCC
Confidence 67788777665
No 18
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=219.31 Aligned_cols=239 Identities=18% Similarity=0.218 Sum_probs=170.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCccccchhhhhhhcccccccc--cccchhccchhhhcCCCeEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+.+||+|||||||||+||.+++|.+++ ++|+|......+..... ..-+.+.+.. ....+...........++.+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~-~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT-DVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce-eecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE
Confidence 458999999999999999999999999 77777653321111111 1112222221 2334444555556677888888
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
..|..++.....+.+.+ +++ ++.++.||||||..++.|.+||..+ +.-+.+..+..+.+ +
T Consensus 81 ~~v~~v~~~~~~F~v~t-~~~---------~~~ak~vIiAtG~~~~~~~~~~e~e--~~g~gv~yc~~cdg-~------- 140 (305)
T COG0492 81 DEVEKVELEGGPFKVKT-DKG---------TYEAKAVIIATGAGARKLGVPGEEE--FEGKGVSYCATCDG-F------- 140 (305)
T ss_pred EEEEEEeecCceEEEEE-CCC---------eEEEeEEEECcCCcccCCCCCcchh--hcCCceEEeeecCc-c-------
Confidence 99999998875666643 233 6999999999999999999987542 11112222222222 1
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhc
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~ 297 (351)
.+.|+|+|||||++|+|.|..|.+++ .+|++++|++.++. .+.+.+.+++.
T Consensus 141 ----------~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~l~~~ 191 (305)
T COG0492 141 ----------FKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVERLKKN 191 (305)
T ss_pred ----------ccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHHHHhc
Confidence 23459999999999999999999998 88999999876653 33444555555
Q ss_pred -CcEEEcC-eEEEEeC---CeEEecCCc----EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 298 -GVRLVRG-IVKDVDS---QKLILNDGT----EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 298 -gV~~~~~-~v~~v~~---~~v~~~~g~----~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+|+++++ .++++.+ .+|.+++.+ .+++|.|++++|..|+ .|++.+++ ++++|
T Consensus 192 ~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g 253 (305)
T COG0492 192 VKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENG 253 (305)
T ss_pred CCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCC
Confidence 8999999 4999988 477887642 6889999999999999 88888776 66665
No 19
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.96 E-value=4.2e-28 Score=232.85 Aligned_cols=244 Identities=18% Similarity=0.196 Sum_probs=169.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhhh--------hc---ccccc--------cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAST--------CV---GTLEF--------RSVA 117 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~~--------~~---~~~~~--------~~~~ 117 (351)
..+||+||||||+|++||++|++.|.+|+|||+++.+.... ..+.- .. ....+ .++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 45899999999999999999999999999999865432110 00000 00 00000 0000
Q ss_pred c---c-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 118 E---P-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 118 ~---~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
. . ..+.........++.++.+++..++.. .+.+.. .++. ...+.||+||||||+.|+.|++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVEC-PDGE------VETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCCCCC
Confidence 0 0 001111223345788888888777654 454433 2232 1379999999999999999887
Q ss_pred CCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
++.+ +.+++. ..+... . ...++++|||||.+|+|+|..+.+++
T Consensus 155 ~~~~~~~v~~~------~~~~~~-------~----------~~~~~v~IiGgG~~g~E~A~~l~~~g------------- 198 (461)
T PRK05249 155 VDFDHPRIYDS------DSILSL-------D----------HLPRSLIIYGAGVIGCEYASIFAALG------------- 198 (461)
T ss_pred CCCCCCeEEcH------HHhhch-------h----------hcCCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 7754 222222 222111 1 12359999999999999999999887
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc-cc-
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. ++ +.+.+|+++++|.||+|+|++|+ ++
T Consensus 199 -~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 277 (461)
T PRK05249 199 -VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGL 277 (461)
T ss_pred -CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCC
Confidence 899999997 57888999999999999999999999994 888863 33 44567888999999999999999 53
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 278 ~l~~~g~~~~~~G 290 (461)
T PRK05249 278 NLENAGLEADSRG 290 (461)
T ss_pred CchhhCcEecCCC
Confidence 567788777665
No 20
>PLN02546 glutathione reductase
Probab=99.96 E-value=8e-28 Score=232.87 Aligned_cols=239 Identities=18% Similarity=0.281 Sum_probs=167.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCC---------Cccc---------------cchhhhhh-----hccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMV---------------FTPLLAST-----CVGT 110 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~---------~~~~---------------~~~~~~~~-----~~~~ 110 (351)
..++||+||||||+|+.||..+++.|.+|+|+|+. ..+. +...+... ..|.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34589999999999999999999999999999951 1110 00000000 0010
Q ss_pred -------cccccc-------ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEE
Q 018704 111 -------LEFRSV-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (351)
Q Consensus 111 -------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lvi 176 (351)
+++..+ ...+...........++.++.++++.++.. .+.+ +++ .+.||+|||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v----~G~--------~~~~D~LVI 222 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDV----DGK--------LYTARNILI 222 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEE----CCE--------EEECCEEEE
Confidence 011111 011112222333456788998888888763 4543 344 799999999
Q ss_pred ecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHH
Q 018704 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (351)
Q Consensus 177 AtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~ 256 (351)
|||+.|..|++||.+ .+++ ..++..+ . ...++++|||||.+|+|+|..|..++
T Consensus 223 ATGs~p~~P~IpG~~-~v~~---~~~~l~~----------~----------~~~k~V~VIGgG~iGvE~A~~L~~~g--- 275 (558)
T PLN02546 223 AVGGRPFIPDIPGIE-HAID---SDAALDL----------P----------SKPEKIAIVGGGYIALEFAGIFNGLK--- 275 (558)
T ss_pred eCCCCCCCCCCCChh-hccC---HHHHHhc----------c----------ccCCeEEEECCCHHHHHHHHHHHhcC---
Confidence 999999999999973 2222 2221111 1 12359999999999999999998877
Q ss_pred HHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---CeEE--ecCCcEEeccEEEE
Q 018704 257 VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QKLI--LNDGTEVPYGLLVW 329 (351)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~~v~--~~~g~~~~~D~vi~ 329 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++. +.++.. +.+. +.+++...+|.||+
T Consensus 276 -----------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viv 344 (558)
T PLN02546 276 -----------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMF 344 (558)
T ss_pred -----------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEE
Confidence 899999987 47888999999999999999999999995 888853 3333 34444455899999
Q ss_pred ecCCCCc-cc--cccCCCCCCCCC
Q 018704 330 STGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 330 a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
|+|++|+ ++ ++++|++++++|
T Consensus 345 a~G~~Pnt~~L~le~~gl~~d~~G 368 (558)
T PLN02546 345 ATGRKPNTKNLGLEEVGVKMDKNG 368 (558)
T ss_pred eeccccCCCcCChhhcCCcCCCCC
Confidence 9999999 54 578888888776
No 21
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.96 E-value=5.2e-28 Score=233.09 Aligned_cols=242 Identities=19% Similarity=0.252 Sum_probs=165.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC----c----cccc-------h---hhhh-----------hhccc--
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN----H----MVFT-------P---LLAS-----------TCVGT-- 110 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~----~----~~~~-------~---~~~~-----------~~~~~-- 110 (351)
.+||+||||||||++||.+|++.|.+|+|||+.. . +... | ++.. ...|.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 4899999999999999999999999999999621 1 1110 1 0000 00011
Q ss_pred ---ccccccccchhccch-------hhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC
Q 018704 111 ---LEFRSVAEPIARIQP-------AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (351)
Q Consensus 111 ---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 180 (351)
..+..+......... ......++.++.+.+... +.+.+.+.....+. .+.||+||||||+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~--~~~~v~v~~~~~~~--------~i~~d~lIIATGs 154 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLK--DEHTVSYGDNSQEE--------TITAKYILIATGG 154 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEc--cCCEEEEeeCCCce--------EEECCEEEEecCC
Confidence 011111111111110 111223566666655543 44566654211222 7999999999999
Q ss_pred CcCCC-CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHh
Q 018704 181 EASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (351)
Q Consensus 181 ~p~~p-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~ 259 (351)
.|+.| .+||.++..++. .+... ....| ++++|||||++|+|+|..|.+++
T Consensus 155 ~p~~p~~i~G~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 205 (499)
T PTZ00052 155 RPSIPEDVPGAKEYSITS---DDIFS----------LSKDP----------GKTLIVGASYIGLETAGFLNELG------ 205 (499)
T ss_pred CCCCCCCCCCccceeecH---HHHhh----------hhcCC----------CeEEEECCCHHHHHHHHHHHHcC------
Confidence 99988 489875433222 22211 11122 49999999999999999999887
Q ss_pred hhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCC
Q 018704 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 260 ~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
.+|+++++..+++.+++++.+.+.+.|++.||+++.+. +.+++. + .+.+.+|+++++|.|++|+|++
T Consensus 206 --------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 206 --------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred --------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 89999998777788999999999999999999999994 777753 2 4566788889999999999999
Q ss_pred Cc-ccc--ccCCCCCCCCC
Q 018704 335 PS-TLV--KSLDLPKSPGG 350 (351)
Q Consensus 335 p~-~~~--~~~gl~~~~~G 350 (351)
|+ +++ +.+|++++++|
T Consensus 278 pn~~~l~l~~~g~~~~~~G 296 (499)
T PTZ00052 278 PDIKGLNLNAIGVHVNKSN 296 (499)
T ss_pred CCccccCchhcCcEECCCC
Confidence 99 654 57788887766
No 22
>PRK14694 putative mercuric reductase; Provisional
Probab=99.96 E-value=1.4e-27 Score=229.10 Aligned_cols=240 Identities=16% Similarity=0.217 Sum_probs=167.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhh----------------------cccc------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC----------------------VGTL------ 111 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~----------------------~~~~------ 111 (351)
..++||+||||||||++||..|++.|.+|+|||++.. ... ++...| .|..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~-GGt-c~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI-GGT-CVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc-ccc-eecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 4568999999999999999999999999999998641 110 000000 0110
Q ss_pred cccccccchhcc---------chhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 112 EFRSVAEPIARI---------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 112 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
++..+....... ...+....++.++.+.+..++.+.+.+.+. ++. ..++.||+||||||+.|
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~---~g~------~~~~~~d~lViATGs~p 152 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLN---DGG------EQTVHFDRAFIGTGARP 152 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEec---CCC------eEEEECCEEEEeCCCCC
Confidence 000111011111 011223447899999999998776555542 332 12799999999999999
Q ss_pred CCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhc
Q 018704 183 STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (351)
Q Consensus 183 ~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~ 262 (351)
+.|++||.+...+ + +..+...+ .. ..++++|||+|.+|+|+|..|.+++
T Consensus 153 ~~p~i~G~~~~~~-~-~~~~~~~l----------~~----------~~~~vvViG~G~~G~E~A~~l~~~g--------- 201 (468)
T PRK14694 153 AEPPVPGLAETPY-L-TSTSALEL----------DH----------IPERLLVIGASVVALELAQAFARLG--------- 201 (468)
T ss_pred CCCCCCCCCCCce-E-cchhhhch----------hc----------CCCeEEEECCCHHHHHHHHHHHHcC---------
Confidence 9999999853211 1 11122111 11 1249999999999999999999887
Q ss_pred CCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC--eEEe-cCCcEEeccEEEEecCCCCc-c
Q 018704 263 HVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLIL-NDGTEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 263 ~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~--~v~~-~~g~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++.++++.+++++.+.+.+.+++.||+++.+ .|.+++.+ .+.+ .++.++++|.||+|+|.+|+ +
T Consensus 202 -----~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 202 -----SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred -----CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 8999999888888889999999999999999999999 48888642 2322 23447999999999999999 5
Q ss_pred cc--ccCCCCC
Q 018704 338 LV--KSLDLPK 346 (351)
Q Consensus 338 ~~--~~~gl~~ 346 (351)
++ +.+|++.
T Consensus 277 ~l~l~~~g~~~ 287 (468)
T PRK14694 277 NLNLESIGVET 287 (468)
T ss_pred CCCchhcCccc
Confidence 43 4566664
No 23
>PRK06370 mercuric reductase; Validated
Probab=99.96 E-value=1.6e-27 Score=228.63 Aligned_cols=239 Identities=20% Similarity=0.246 Sum_probs=164.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc---chhhh----------------hhhcccc-------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF---TPLLA----------------STCVGTL-------EFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~---~~~~~----------------~~~~~~~-------~~~ 114 (351)
.++||+||||||+|++||.+|++.|++|+|||+...... ..+.+ ....|.. ++.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 358999999999999999999999999999998632110 00000 0001111 111
Q ss_pred ccccch-------hccchhhhcC-CCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 115 SVAEPI-------ARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 115 ~~~~~~-------~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.+.... .......... .++.++.+.... .+.+.+.+ ++. .+.||+||||||+.|+.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~--~~~~~v~v----~~~--------~~~~d~lViATGs~p~~p~ 149 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF--ESPNTVRV----GGE--------TLRAKRIFINTGARAAIPP 149 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE--ccCCEEEE----CcE--------EEEeCEEEEcCCCCCCCCC
Confidence 010000 0111112223 377777766543 34556654 233 7899999999999999999
Q ss_pred CCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
+||.+. ..++.. +... .... .++++|||||++|+|+|..|.+++
T Consensus 150 i~G~~~~~~~~~~---~~~~----------~~~~----------~~~vvVIGgG~~g~E~A~~l~~~G------------ 194 (463)
T PRK06370 150 IPGLDEVGYLTNE---TIFS----------LDEL----------PEHLVIIGGGYIGLEFAQMFRRFG------------ 194 (463)
T ss_pred CCCCCcCceEcch---HhhC----------cccc----------CCEEEEECCCHHHHHHHHHHHHcC------------
Confidence 999753 222221 1111 1112 259999999999999999999877
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC--e--EEec---CCcEEeccEEEEecCCCCc
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~--~--v~~~---~g~~~~~D~vi~a~G~~p~ 336 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|.+++.+ + +.+. ++.++++|.||+|+|++|+
T Consensus 195 --~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 195 --SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred --CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 899999997 4777888899999999999999999999 48888752 2 3332 3457999999999999999
Q ss_pred -c-c-cccCCCCCCCCC
Q 018704 337 -T-L-VKSLDLPKSPGG 350 (351)
Q Consensus 337 -~-~-~~~~gl~~~~~G 350 (351)
+ + ++..|++++++|
T Consensus 273 ~~~l~l~~~g~~~~~~G 289 (463)
T PRK06370 273 TDDLGLEAAGVETDARG 289 (463)
T ss_pred CCCcCchhhCceECCCC
Confidence 5 4 567788777666
No 24
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=1.7e-27 Score=218.05 Aligned_cols=240 Identities=19% Similarity=0.193 Sum_probs=161.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc---cccchhhhhhhcccccccccccchhccchhhhcCCCeEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---MVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
...+||+|||||||||+||..|++.|+++++||.... +.+.+...... +....... ..+.+.........+..+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLTG-PLLMERMHEHATKFETEII 81 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCCH-HHHHHHHHHHHHHCCCEEE
Confidence 3468999999999999999999999999999985432 11111111111 10010001 1112222222333345566
Q ss_pred EEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhc
Q 018704 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 137 ~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
...|..++...+.+.+.. +.. .+.||+||+|||+.|+.|++||.+.. ....+..+..+....
T Consensus 82 ~~~v~~v~~~~~~~~v~~--~~~--------~~~~d~vilAtG~~~~~~~i~g~~~~--~~~~v~~~~~~~~~~------ 143 (321)
T PRK10262 82 FDHINKVDLQNRPFRLTG--DSG--------EYTCDALIIATGASARYLGLPSEEAF--KGRGVSACATCDGFF------ 143 (321)
T ss_pred eeEEEEEEecCCeEEEEe--cCC--------EEEECEEEECCCCCCCCCCCCCHHHc--CCCcEEEeecCCHHH------
Confidence 667888888888877643 223 68999999999999999999996421 111111111111111
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
..+++++|||+|++|+|+|..|.+++ .+|+++++...+. .++.+.+.+.+.+++
T Consensus 144 -----------~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~l~~ 197 (321)
T PRK10262 144 -----------YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVEN 197 (321)
T ss_pred -----------cCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhhccC
Confidence 23469999999999999999999887 8999999975332 345677888888999
Q ss_pred cCcEEEcCe-EEEEeCC-----eEEecCC------cEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~-----~v~~~~g------~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
.||+++++. ++++.++ ++++.++ +++++|.||+++|++|+ .++.. ++++
T Consensus 198 ~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~ 259 (321)
T PRK10262 198 GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLEL 259 (321)
T ss_pred CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccc
Confidence 999999994 9999764 3666532 36999999999999999 55442 4444
No 25
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.96 E-value=1.5e-27 Score=228.36 Aligned_cols=249 Identities=22% Similarity=0.301 Sum_probs=168.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc-CceEEEEcCC--------Cccccchhhhhhh---------------------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPR--------NHMVFTPLLASTC---------------------VGT 110 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~--------~~~~~~~~~~~~~---------------------~~~ 110 (351)
..+||+||||||+|+.||..+++. |.+|+|||++ ..+... ++...| .|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGt-Cln~GCiPsK~l~~~a~~~~~~~~~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGT-CVNVGCVPKKLMVTGAQYMDTLRESAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCe-ecCcCCccHHHHHHHHHHHHHHHHhhccCe
Confidence 358999999999999999999996 9999999973 222111 000000 010
Q ss_pred c--------ccccccc-------chhccchhhhcC-CCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEE
Q 018704 111 L--------EFRSVAE-------PIARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174 (351)
Q Consensus 111 ~--------~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~l 174 (351)
. ++..+.. .+.......... .++.++.+...-+ +.+++.+....++. ..+...+.||+|
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~--~~~~v~V~~~~~~~---~~~~~~~~~d~l 155 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALE--DKNVVLVRESADPK---SAVKERLQAEHI 155 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEc--cCCEEEEeeccCCC---CCcceEEECCEE
Confidence 0 0000000 011111112223 4788888875544 45677764321111 000237999999
Q ss_pred EEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHH
Q 018704 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (351)
Q Consensus 175 viAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~ 254 (351)
|||||+.|..|++||.+ .+++.. +... +... .++++|||||++|+|+|..+..+.
T Consensus 156 IIATGs~p~~p~i~G~~-~~~~~~---~~~~----------~~~~----------~~~vvIIGgG~iG~E~A~~~~~l~- 210 (486)
T TIGR01423 156 LLATGSWPQMLGIPGIE-HCISSN---EAFY----------LDEP----------PRRVLTVGGGFISVEFAGIFNAYK- 210 (486)
T ss_pred EEecCCCCCCCCCCChh-heechh---hhhc----------cccC----------CCeEEEECCCHHHHHHHHHHHHhc-
Confidence 99999999999999973 333221 2111 1112 259999999999999998887652
Q ss_pred HHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEE
Q 018704 255 RDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLL 327 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~v 327 (351)
+.+.+|+++++. .+++.+++++.+.+.+.|++.||+++++. +++++. + .+.+.+|+++++|.|
T Consensus 211 ----------~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~v 280 (486)
T TIGR01423 211 ----------PRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVV 280 (486)
T ss_pred ----------cCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEE
Confidence 123899999997 57888999999999999999999999995 888863 2 466678888999999
Q ss_pred EEecCCCCc-cc--cccCCCCCCCCC
Q 018704 328 VWSTGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 328 i~a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
++|+|++|+ .+ ++.+|++++++|
T Consensus 281 l~a~G~~Pn~~~l~l~~~gl~~~~~G 306 (486)
T TIGR01423 281 MMAIGRVPRTQTLQLDKVGVELTKKG 306 (486)
T ss_pred EEeeCCCcCcccCCchhhCceECCCC
Confidence 999999999 43 456778777666
No 26
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-28 Score=198.98 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=180.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC--------CccccchhhhhhhcccccccccccchhccchhhhcCCCe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR--------NHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGS 133 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (351)
+.+|+|||+|||+.+||+++++..++.+|+|.. .++.......+. .|.|+- -....+.+.+.......+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNf-PGFPdg-i~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENF-PGFPDG-ITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccC-CCCCcc-cccHHHHHHHHHHHHhhcc
Confidence 458999999999999999999999999999942 222111111100 011111 1123344555556777799
Q ss_pred EEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHh
Q 018704 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 134 ~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
.++...|.++|.+.+.+.+.+ +.. .+.+|.||+|||+..+.+.+||..+..+|.+.+..+.-+.+..
T Consensus 86 ~i~tEtVskv~~sskpF~l~t--d~~--------~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaa--- 152 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWT--DAR--------PVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAA--- 152 (322)
T ss_pred eeeeeehhhccccCCCeEEEe--cCC--------ceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcc---
Confidence 999999999999999998875 333 8999999999999999999999855558888887776665542
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHH-
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT- 292 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~- 292 (351)
|. -+.|..+|||||++|+|.|.+|..++ .+|++++|++.+ +..+.+++
T Consensus 153 ------pi------frnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~f-----RAs~~Mq~r 201 (322)
T KOG0404|consen 153 ------PI------FRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHF-----RASKIMQQR 201 (322)
T ss_pred ------hh------hcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhh-----hHHHHHHHH
Confidence 21 45579999999999999999999998 999999998655 34455544
Q ss_pred HhhhcCcEEEcCe-EEEEeCC-----eEEe-----cCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 293 QLSKSGVRLVRGI-VKDVDSQ-----KLIL-----NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 293 ~l~~~gV~~~~~~-v~~v~~~-----~v~~-----~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
..+..+|+++++. +.+..++ ++.+ .+.+.++++.+++++|+.|+ .|++. ++++|++|
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~G 270 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDG 270 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCc
Confidence 4556699999996 5555443 3333 33456999999999999999 88887 89999887
No 27
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.96 E-value=1.8e-27 Score=215.82 Aligned_cols=239 Identities=19% Similarity=0.222 Sum_probs=158.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccc--cccchhccchhhhcCCCeEEEEEEe
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
+||+|||||+|||+||..|++.|++|+|||++.... ...........+.+.. ....+...........++.++..+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v 79 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGG-QLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV 79 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCc-ceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 589999999999999999999999999999875210 0000000000111100 0011222222233344677777999
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (351)
+.++.+.+.+.++. .++. .+.||+||+|||..|+.|.+||.+... ...+.....+...
T Consensus 80 ~~v~~~~~~~~v~~-~~~~--------~~~~d~liiAtG~~~~~~~i~g~~~~~--~~~~~~~~~~~~~----------- 137 (300)
T TIGR01292 80 IKVDLSDRPFKVKT-GDGK--------EYTAKAVIIATGASARKLGIPGEDEFL--GRGVSYCATCDGP----------- 137 (300)
T ss_pred EEEEecCCeeEEEe-CCCC--------EEEeCEEEECCCCCcccCCCCChhhcC--CccEEEeeecChh-----------
Confidence 99999887777654 3444 899999999999999999999864211 0000000000001
Q ss_pred CCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhc-Cc
Q 018704 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GV 299 (351)
Q Consensus 221 ~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~-gV 299 (351)
....++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+. ....+.+.+++. ||
T Consensus 138 ------~~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~-----~~~~~~~~l~~~~gv 192 (300)
T TIGR01292 138 ------FFKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFR-----AEKILLDRLRKNPNI 192 (300)
T ss_pred ------hcCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccC-----cCHHHHHHHHhCCCe
Confidence 023469999999999999999998776 8999999975332 123445566676 99
Q ss_pred EEEcCe-EEEEeCC----eEEec---CC--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 300 RLVRGI-VKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 300 ~~~~~~-v~~v~~~----~v~~~---~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+++.+. +++++.+ .+++. +| .++++|.||+|+|++|+ ++++.+ ++.+++|
T Consensus 193 ~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g 253 (300)
T TIGR01292 193 EFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGG 253 (300)
T ss_pred EEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCC
Confidence 999994 9888764 24443 23 56999999999999999 687776 5555554
No 28
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=2e-27 Score=228.19 Aligned_cols=242 Identities=21% Similarity=0.303 Sum_probs=164.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----hhhhh-----------h-----hccc------cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLAS-----------T-----CVGT------LEFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----~~~~~-----------~-----~~~~------~~~~ 114 (351)
..+||+||||||||++||..|++.|.+|+|||++. +... ...+. . ..+. ..+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999875 2111 00000 0 0000 0111
Q ss_pred ccccchhc-------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 115 SVAEPIAR-------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 115 ~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
.+...... -........++.++.+.++.++.. .+.+...+++. .+.||+||||||+.|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~--~~~v~~~~~~~--------~~~~d~lViAtGs~p~~~-- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPN--TVRVMTEDGEQ--------TYTAKNIILATGSRPREL-- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEEecCCCcE--------EEEeCEEEEeCCCCCCCC--
Confidence 11111000 011233456888888888877654 44443222223 899999999999998754
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
||.+.....+.+..+...+. . ..++++|||||++|+|+|..|.+++
T Consensus 150 pg~~~~~~~v~~~~~~~~~~----------~----------~~~~vvVvGgG~~g~E~A~~l~~~g-------------- 195 (462)
T PRK06416 150 PGIEIDGRVIWTSDEALNLD----------E----------VPKSLVVIGGGYIGVEFASAYASLG-------------- 195 (462)
T ss_pred CCCCCCCCeEEcchHhhCcc----------c----------cCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 45432211222222222111 1 1259999999999999999998876
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--e--EEecCC---cEEeccEEEEecCCCCc-c
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~--v~~~~g---~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ + +.+.+| +++++|.||+|+|++|+ .
T Consensus 196 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 196 AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999996 57788899999999999999999999994 9888753 3 344555 67999999999999999 5
Q ss_pred cc--ccCCCCCCCCC
Q 018704 338 LV--KSLDLPKSPGG 350 (351)
Q Consensus 338 ~~--~~~gl~~~~~G 350 (351)
++ +.+|++++ +|
T Consensus 276 ~l~l~~~gl~~~-~g 289 (462)
T PRK06416 276 NLGLEELGVKTD-RG 289 (462)
T ss_pred CCCchhcCCeec-CC
Confidence 53 56677765 44
No 29
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.95 E-value=2.2e-27 Score=227.72 Aligned_cols=240 Identities=19% Similarity=0.209 Sum_probs=166.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC--------ccccchhhhhhh---------------------cccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLLASTC---------------------VGTL- 111 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~--------~~~~~~~~~~~~---------------------~~~~- 111 (351)
++||+||||||+|+.+|..+++.|.+|+|||+.. .+... ++...| .|..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGt-c~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGT-CVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccc-ccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 4799999999999999999999999999999631 11100 000000 0000
Q ss_pred cc---cccc----------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEec
Q 018704 112 EF---RSVA----------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 112 ~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAt 178 (351)
.. .++. ..+...........++.++.+...-++. +.+.+... ++. ...+.||+|||||
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~-~g~------~~~~~~d~lVIAT 151 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNK-KGK------EKIYSAERFLIAT 151 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEecc-CCC------ceEEEeCEEEEec
Confidence 00 0010 0011111123445578888887776654 45655322 221 1279999999999
Q ss_pred CCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH
Q 018704 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (351)
Q Consensus 179 G~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~ 258 (351)
|+.|+.|++||.++..++. ++... +...| ++++|||||.+|+|+|..|.+++
T Consensus 152 Gs~p~~p~ipG~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G----- 203 (484)
T TIGR01438 152 GERPRYPGIPGAKELCITS---DDLFS----------LPYCP----------GKTLVVGASYVALECAGFLAGIG----- 203 (484)
T ss_pred CCCCCCCCCCCccceeecH---HHhhc----------ccccC----------CCEEEECCCHHHHHHHHHHHHhC-----
Confidence 9999999999975433222 12111 11223 38999999999999999999887
Q ss_pred hhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCC---cEEeccEEEEe
Q 018704 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDG---TEVPYGLLVWS 330 (351)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g---~~~~~D~vi~a 330 (351)
.+|+++++..+++.+++++.+.+.+.|++.||+++++. +.+++. + .+.+.++ .++++|.||+|
T Consensus 204 ---------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a 274 (484)
T TIGR01438 204 ---------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLA 274 (484)
T ss_pred ---------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEE
Confidence 89999998778899999999999999999999999994 777753 2 3555555 37999999999
Q ss_pred cCCCCc-cc--cccCCCCCCC
Q 018704 331 TGVGPS-TL--VKSLDLPKSP 348 (351)
Q Consensus 331 ~G~~p~-~~--~~~~gl~~~~ 348 (351)
+|++|+ ++ ++.+|+++++
T Consensus 275 ~G~~pn~~~l~l~~~gv~~~~ 295 (484)
T TIGR01438 275 IGRDACTRKLNLENVGVKINK 295 (484)
T ss_pred ecCCcCCCcCCcccccceecC
Confidence 999999 54 4677777654
No 30
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.95 E-value=7.4e-27 Score=223.85 Aligned_cols=244 Identities=21% Similarity=0.289 Sum_probs=170.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc---------cchhhhhh----------hcccc---------ccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV---------FTPLLAST----------CVGTL---------EFR 114 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~---------~~~~~~~~----------~~~~~---------~~~ 114 (351)
++|+|||||++|+.||..+++.|.+|+|||++.... .-.++... ..|.. ++.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 589999999999999999999999999999864210 00011000 00110 000
Q ss_pred ccccch-------hccchhhhcCCCeEEEEEEeeeEe--CCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 115 SVAEPI-------ARIQPAISREPGSYFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 115 ~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~i~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.+.... ...........++.++.+.+..++ .+.+.+.+.. .++. ...+.||+||||||+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~-~~g~------~~~~~~d~lViATGs~p~~~ 154 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTT-ADGG------EETLDADVVLIATGASPRIL 154 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEe-CCCc------eEEEecCEEEEcCCCCCCCC
Confidence 000000 111112233457899999888865 5567776643 2332 12689999999999999877
Q ss_pred CCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 GIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
++++.+ +.++++.++.+. ...| ++++|||+|.+|+|+|..|.+++
T Consensus 155 p~~~~~~~~v~~~~~~~~~-------------~~~~----------~~vvVIGgG~ig~E~A~~l~~~g----------- 200 (466)
T PRK07845 155 PTAEPDGERILTWRQLYDL-------------DELP----------EHLIVVGSGVTGAEFASAYTELG----------- 200 (466)
T ss_pred CCCCCCCceEEeehhhhcc-------------cccC----------CeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 655432 234433322211 1122 49999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc-c
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.+. |.+++. ++ +.+.+|+++++|.||+|+|++|+ .
T Consensus 201 ---~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 201 ---VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred ---CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 899999986 57788899999999999999999999994 888853 33 45578889999999999999999 4
Q ss_pred c--cccCCCCCCCCC
Q 018704 338 L--VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~--~~~~gl~~~~~G 350 (351)
+ ++++|++++++|
T Consensus 278 ~l~l~~~gl~~~~~G 292 (466)
T PRK07845 278 GLGLEEAGVELTPSG 292 (466)
T ss_pred CCCchhhCceECCCC
Confidence 3 577888887766
No 31
>PRK13748 putative mercuric reductase; Provisional
Probab=99.95 E-value=1.2e-26 Score=227.93 Aligned_cols=244 Identities=15% Similarity=0.169 Sum_probs=167.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhh---------------hhh--cccc------cc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLA---------------STC--VGTL------EF 113 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~---------------~~~--~~~~------~~ 113 (351)
..+||+||||||+|++||..|++.|.+|+|||++ .+.... +.+ ... .|.. .+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 4689999999999999999999999999999986 321110 000 000 0110 00
Q ss_pred cccccchhc---------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 114 RSVAEPIAR---------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 114 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..+...... +...+....++.++.+.+..++.. .+.+.. .++. ...+.||+||||||+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQ--TLIVRL-NDGG------ERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCC
Confidence 000000000 001122233788888888877654 454432 2332 1379999999999999999
Q ss_pred CCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 185 p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
|++||.+...+ +... + .+. ... ..++++|||||.+|+|+|..|.+++
T Consensus 247 p~i~g~~~~~~-~~~~-~--~~~--------~~~----------~~~~vvViGgG~ig~E~A~~l~~~g----------- 293 (561)
T PRK13748 247 PPIPGLKETPY-WTST-E--ALV--------SDT----------IPERLAVIGSSVVALELAQAFARLG----------- 293 (561)
T ss_pred CCCCCCCccce-EccH-H--Hhh--------ccc----------CCCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 99999753211 1111 1 111 111 2259999999999999999999887
Q ss_pred CCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEEec-CCcEEeccEEEEecCCCCc-cc-
Q 018704 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 265 ~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~~~-~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++.++++.+++++.+.+.+.+++.||+++.+. |++++. +.+.+. ++.++++|.||+|+|++|+ .+
T Consensus 294 ---~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 294 ---SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSL 370 (561)
T ss_pred ---CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCc
Confidence 89999999877777899999999999999999999994 888864 333332 2346999999999999999 54
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++++|++++++|
T Consensus 371 ~l~~~g~~~~~~g 383 (561)
T PRK13748 371 ALDAAGVTVNAQG 383 (561)
T ss_pred CchhcCceECCCC
Confidence 467788887766
No 32
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=3.3e-27 Score=226.40 Aligned_cols=242 Identities=18% Similarity=0.212 Sum_probs=164.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhh------h----------hccc------ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS------T----------CVGT------LEFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~------~----------~~~~------~~~~~ 115 (351)
++||+||||||+|++||..|++.|.+|+|||+.+.+.... +.+. . ..|. .++..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDK 83 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence 5899999999999999999999999999999865432110 0000 0 0000 00111
Q ss_pred cccch-------hccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC-CCC
Q 018704 116 VAEPI-------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST-FGI 187 (351)
Q Consensus 116 ~~~~~-------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~-p~i 187 (351)
+.... ......+....++.++.+.+..++ .+.+.+.. .+++ ...+.||+||||||+.|+. |.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~p~~ 154 (471)
T PRK06467 84 MRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTG-EDGK------TTVIEFDNAIIAAGSRPIQLPFI 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEec-CCCc------eEEEEcCEEEEeCCCCCCCCCCC
Confidence 10000 001112234457888888777654 46666643 2331 1279999999999999974 556
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
++..+.+++. .++.. +...| ++++|||||.+|+|+|..+.+++
T Consensus 155 ~~~~~~v~~~---~~~~~----------~~~~~----------~~vvIiGgG~iG~E~A~~l~~~G-------------- 197 (471)
T PRK06467 155 PHDDPRIWDS---TDALE----------LKEVP----------KRLLVMGGGIIGLEMGTVYHRLG-------------- 197 (471)
T ss_pred CCCCCcEECh---HHhhc----------cccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 6543333322 22221 11122 49999999999999999999887
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecC--C--cEEeccEEEEecCCCCc-
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILND--G--TEVPYGLLVWSTGVGPS- 336 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~--g--~~~~~D~vi~a~G~~p~- 336 (351)
.+|+++++. .+++.+++++.+.+.+.+++. |+++++. |.+++. ++ +.+.+ | +++++|.||+|+|++|+
T Consensus 198 ~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 198 SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 899999997 578889999999999999888 9999994 888863 33 33433 2 36999999999999999
Q ss_pred cc--cccCCCCCCCCC
Q 018704 337 TL--VKSLDLPKSPGG 350 (351)
Q Consensus 337 ~~--~~~~gl~~~~~G 350 (351)
++ ++..|++++++|
T Consensus 277 ~~l~~~~~gl~~~~~G 292 (471)
T PRK06467 277 KLLDAEKAGVEVDERG 292 (471)
T ss_pred CccChhhcCceECCCC
Confidence 53 456678877766
No 33
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.95 E-value=4.1e-27 Score=225.99 Aligned_cols=238 Identities=22% Similarity=0.258 Sum_probs=165.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------h---hh-----hhhh----cc------cccccccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LL-----ASTC----VG------TLEFRSVA 117 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~---~~-----~~~~----~~------~~~~~~~~ 117 (351)
+||+||||||+|++||.+|++.|.+|+|||++... .. | ++ .... .+ .+++..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~G-G~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLG-GTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccc-CCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 58999999999999999999999999999986421 11 0 00 0000 00 00111000
Q ss_pred cc-------hhc-cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 118 EP-------IAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 118 ~~-------~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
.. +.. ....+....++.++.+++..++ .+.+.+. ++. ..+.||+||||||+.|+.|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~---~g~-------~~~~~~~lIiATGs~p~~p~i~G 147 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVD---LGR-------EVRGAKRFLIATGARPAIPPIPG 147 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEc---CCe-------EEEEeCEEEEcCCCCCCCCCCCC
Confidence 00 111 0112334457888888776554 4566552 221 26899999999999999999999
Q ss_pred cccc-ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 190 VKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 190 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
.+.. .++. .++.. .... .++++|||+|.+|+|+|..|.+++ .
T Consensus 148 ~~~~~~~~~---~~~~~----------~~~~----------~~~vvIIGgG~~g~E~A~~l~~~g--------------~ 190 (463)
T TIGR02053 148 LKEAGYLTS---EEALA----------LDRI----------PESLAVIGGGAIGVELAQAFARLG--------------S 190 (463)
T ss_pred cccCceECc---hhhhC----------cccC----------CCeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 7532 2222 12111 1111 249999999999999999999877 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEec---CCcEEeccEEEEecCCCCc-c-
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILN---DGTEVPYGLLVWSTGVGPS-T- 337 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~---~g~~~~~D~vi~a~G~~p~-~- 337 (351)
+|+++++. .+++.+++++...+.+.+++.||+++.+. |++++.+ .+.+. +++++++|.||+|+|++|+ +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 99999997 57788899999999999999999999995 9888642 23333 2357999999999999999 5
Q ss_pred c-cccCCCCCCCCC
Q 018704 338 L-VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~-~~~~gl~~~~~G 350 (351)
+ ++..|++++++|
T Consensus 271 l~l~~~g~~~~~~G 284 (463)
T TIGR02053 271 LGLEKAGVKLDERG 284 (463)
T ss_pred CCccccCCEECCCC
Confidence 4 677778777665
No 34
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=207.39 Aligned_cols=229 Identities=22% Similarity=0.361 Sum_probs=164.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEc---CCCccccchhhhhhhcc---------------------------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVS---PRNHMVFTPLLASTCVG--------------------------- 109 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie---~~~~~~~~~~~~~~~~~--------------------------- 109 (351)
.-.+|.+|||||.+||+||++++..|.+|.++| |.+. ...+.+.+.|.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~-GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQ-GTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCC-CCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 456999999999999999999999999999999 2221 112223333322
Q ss_pred -------cccccccccchhccchhhhcCCCeE---EEEEEeeeEeC-----CCCEEEEEeecCccccCCCceeEeeccEE
Q 018704 110 -------TLEFRSVAEPIARIQPAISREPGSY---FFLSHCAGIDT-----DNHVVHCETVTDELRTLEPWKFKISYDKL 174 (351)
Q Consensus 110 -------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~d~l 174 (351)
..++..+.+.+++ .+......+ .+..+|..++. +.+.+..+.. .++ .+.++++.+
T Consensus 96 ~~~e~~ikhdW~~l~~sVqn---hI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~-~gk------~~~~ta~~f 165 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQN---HIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK-KGK------ERFLTAENF 165 (503)
T ss_pred CCccccccccHHHHHHHHHH---HhhhccceEEEEeccceeeeeecceeecccceEEEecC-CCc------eEEeecceE
Confidence 0011111112222 222222222 23335555542 3445554332 332 358999999
Q ss_pred EEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHH
Q 018704 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (351)
Q Consensus 175 viAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~ 254 (351)
|||||.+|++|+|||..+.+++++++ |.+...|+ +.+|||+|++|+|+|.+|..+|
T Consensus 166 vIatG~RPrYp~IpG~~Ey~ITSDDl-------------Fsl~~~PG----------kTLvVGa~YVaLECAgFL~gfg- 221 (503)
T KOG4716|consen 166 VIATGLRPRYPDIPGAKEYGITSDDL-------------FSLPYEPG----------KTLVVGAGYVALECAGFLKGFG- 221 (503)
T ss_pred EEEecCCCCCCCCCCceeeeeccccc-------------ccccCCCC----------ceEEEccceeeeehhhhHhhcC-
Confidence 99999999999999988888888766 66778888 9999999999999999999988
Q ss_pred HHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE---EeCCeEEe--c---CCc--EEe
Q 018704 255 RDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD---VDSQKLIL--N---DGT--EVP 323 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~---v~~~~v~~--~---~g~--~~~ 323 (351)
.+|+++.|+-++++||.++++.+.++|+++||++.... +.+ ++..++.. + .++ +-+
T Consensus 222 -------------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ 288 (503)
T KOG4716|consen 222 -------------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEE 288 (503)
T ss_pred -------------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccch
Confidence 89999999999999999999999999999999999883 444 44444222 1 222 356
Q ss_pred ccEEEEecCCCCc
Q 018704 324 YGLLVWSTGVGPS 336 (351)
Q Consensus 324 ~D~vi~a~G~~p~ 336 (351)
+|.|+||+|..+.
T Consensus 289 ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 289 YDTVLWAIGRKAL 301 (503)
T ss_pred hhhhhhhhccccc
Confidence 9999999999998
No 35
>PRK07846 mycothione reductase; Reviewed
Probab=99.95 E-value=1.6e-26 Score=220.41 Aligned_cols=236 Identities=19% Similarity=0.245 Sum_probs=161.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc---cchhhhh-----------h-----hccc------ccccccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV---FTPLLAS-----------T-----CVGT------LEFRSVA 117 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~---~~~~~~~-----------~-----~~~~------~~~~~~~ 117 (351)
+||+||||||+|.+||..+ .|.+|+|||++.... +..+.+. . ..|. .++..+.
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 7999999999999998764 599999999753210 0000000 0 0011 0111111
Q ss_pred cch----hcc----chhh-hcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 118 EPI----ARI----QPAI-SREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 118 ~~~----~~~----~~~~-~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
... .++ .... ....++.++.++...+ +.+++.+ .+++ .+.||+||||||+.|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v---~~g~--------~~~~d~lViATGs~p~~p~i~ 146 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRT---GDGE--------EITADQVVIAAGSRPVIPPVI 146 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEE---CCCC--------EEEeCEEEEcCCCCCCCCCCC
Confidence 111 111 1111 3345677777776665 4667766 2454 799999999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
|.+.. .+.+.++...+.. ..++++|||||++|+|+|..|.+++ .
T Consensus 147 g~~~~--~~~~~~~~~~l~~--------------------~~~~vvIIGgG~iG~E~A~~l~~~G--------------~ 190 (451)
T PRK07846 147 ADSGV--RYHTSDTIMRLPE--------------------LPESLVIVGGGFIAAEFAHVFSALG--------------V 190 (451)
T ss_pred CcCCc--cEEchHHHhhhhh--------------------cCCeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 86422 1223333322211 1249999999999999999999877 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-ccc--
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLV-- 339 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~-- 339 (351)
+|+++++. .+++.+++++.+.+.+.+ +.+|+++.+. |++++.+ .+.+.+|+++++|.|++|+|++|+ +++
T Consensus 191 ~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~ 269 (451)
T PRK07846 191 RVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDA 269 (451)
T ss_pred eEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCc
Confidence 99999997 577888999888777655 5679999994 8888642 355668889999999999999999 664
Q ss_pred ccCCCCCCCCC
Q 018704 340 KSLDLPKSPGG 350 (351)
Q Consensus 340 ~~~gl~~~~~G 350 (351)
+.+|++++++|
T Consensus 270 ~~~gl~~~~~G 280 (451)
T PRK07846 270 AAAGVDVDEDG 280 (451)
T ss_pred hhcCceECCCC
Confidence 56788887766
No 36
>PTZ00058 glutathione reductase; Provisional
Probab=99.95 E-value=7.8e-27 Score=225.86 Aligned_cols=229 Identities=14% Similarity=0.230 Sum_probs=156.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhh---------------------ccc-----ccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------------------VGT-----LEF 113 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~---------------------~~~-----~~~ 113 (351)
..++||+|||||++|++||..+++.|.+|+|||++. +... ++...| .|. .++
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGt-Cln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGT-CVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-cccc-ccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 466899999999999999999999999999999753 1110 000000 010 011
Q ss_pred cccc-------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEE--------------------EE-----eecCcccc
Q 018704 114 RSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVH--------------------CE-----TVTDELRT 161 (351)
Q Consensus 114 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~--------------------~~-----~~~~~~~~ 161 (351)
..+. ..+.+.........++.++.+...-++ .+++. +. ...++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~--~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~-- 199 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLS--ENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ-- 199 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEec--CCEEEeeccccccccccccccccceeeeccceecCCCc--
Confidence 1100 011111122334457777776554333 22222 21 112333
Q ss_pred CCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChH
Q 018704 162 LEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (351)
Q Consensus 162 ~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~ 241 (351)
.+.||+||||||+.|+.|++||.+ .+++. ++.. + + ...++++|||||.+
T Consensus 200 ------~i~ad~lVIATGS~P~~P~IpG~~-~v~ts---~~~~---~-------l-----------~~pk~VvIIGgG~i 248 (561)
T PTZ00058 200 ------VIEGKNILIAVGNKPIFPDVKGKE-FTISS---DDFF---K-------I-----------KEAKRIGIAGSGYI 248 (561)
T ss_pred ------EEECCEEEEecCCCCCCCCCCCce-eEEEH---HHHh---h-------c-----------cCCCEEEEECCcHH
Confidence 799999999999999999999963 33322 1211 1 1 11359999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---eE--
Q 018704 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KL-- 314 (351)
Q Consensus 242 a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---~v-- 314 (351)
|+|+|..+.+++ .+|+++++. ++++.+++++.+.+.+.+++.||+++++. |.+++++ ++
T Consensus 249 GlE~A~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v 314 (561)
T PTZ00058 249 AVELINVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTI 314 (561)
T ss_pred HHHHHHHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEE
Confidence 999999999887 899999997 57888999999999999999999999995 8888742 23
Q ss_pred EecCC-cEEeccEEEEecCCCCc-ccc
Q 018704 315 ILNDG-TEVPYGLLVWSTGVGPS-TLV 339 (351)
Q Consensus 315 ~~~~g-~~~~~D~vi~a~G~~p~-~~~ 339 (351)
.+.++ +++++|.|++|+|++|+ +++
T Consensus 315 ~~~~~~~~i~aD~VlvA~Gr~Pn~~~L 341 (561)
T PTZ00058 315 YLSDGRKYEHFDYVIYCVGRSPNTEDL 341 (561)
T ss_pred EECCCCEEEECCEEEECcCCCCCcccc
Confidence 33344 57999999999999999 544
No 37
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.95 E-value=6.2e-27 Score=222.36 Aligned_cols=233 Identities=14% Similarity=0.158 Sum_probs=154.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh-----------------------hhhhcc-------c
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL-----------------------ASTCVG-------T 110 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~-----------------------~~~~~~-------~ 110 (351)
..++|+|||||+|||+||++|++.|++|+|+|+++........ ...... .
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3589999999999999999999999999999988754321111 000000 0
Q ss_pred ccc---cc------------cccchhccchhhhcCCCeE---EEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeecc
Q 018704 111 LEF---RS------------VAEPIARIQPAISREPGSY---FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172 (351)
Q Consensus 111 ~~~---~~------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d 172 (351)
.++ .. ....+.++...+....++. .++.+|+.++...+.|.++....+. ...+..||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~-----~~~~~~~d 163 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG-----FSKDEIFD 163 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC-----ceEEEEcC
Confidence 000 00 0112333333344444433 4567999999888888876543221 12257899
Q ss_pred EEEEecC--CCcCCCCCCCccc---cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHH
Q 018704 173 KLVIALG--AEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (351)
Q Consensus 173 ~lviAtG--~~p~~p~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~ 247 (351)
+||+||| ..|+.|.+||.+. ..+++..+..... .++|+|+|||+|++|+|+|.
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~----------------------~~gk~VvVVG~G~Sg~diA~ 221 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDP----------------------FKNEVVVVIGNFASGADISR 221 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccc----------------------cCCCEEEEECCCcCHHHHHH
Confidence 9999999 5699999999853 2234433332222 34569999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC-CeEEecCCcEEecc
Q 018704 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS-QKLILNDGTEVPYG 325 (351)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~-~~v~~~~g~~~~~D 325 (351)
+|...+ .+|+++.|....... ..+.....+++.+ .|..+.+ ++|+++||+.+++|
T Consensus 222 ~L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D 278 (461)
T PLN02172 222 DIAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYAD 278 (461)
T ss_pred HHHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcccceecCCeEEECCCCCccCC
Confidence 999887 899999986422100 1111122334444 4655543 56999999999999
Q ss_pred EEEEecCCCCc-cccccCC
Q 018704 326 LLVWSTGVGPS-TLVKSLD 343 (351)
Q Consensus 326 ~vi~a~G~~p~-~~~~~~g 343 (351)
.||+|||++++ +|++..+
T Consensus 279 ~Ii~~TGy~~~~pfL~~~~ 297 (461)
T PLN02172 279 TIVHCTGYKYHFPFLETNG 297 (461)
T ss_pred EEEECCcCCccccccCccc
Confidence 99999999999 9998755
No 38
>PRK14727 putative mercuric reductase; Provisional
Probab=99.95 E-value=5.7e-26 Score=218.47 Aligned_cols=244 Identities=16% Similarity=0.169 Sum_probs=165.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh---------------hhh-----cccccc---cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---------------STC-----VGTLEF---RSVA 117 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~---------------~~~-----~~~~~~---~~~~ 117 (351)
.++||+|||||++|+++|+.|++.|.+|+|||+++.+....... ... .|.... .++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 45899999999999999999999999999999874332111000 000 011000 0010
Q ss_pred cch-------hc-----cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 118 EPI-------AR-----IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 118 ~~~-------~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
... .. +...+....++.++.+...-++ .+.+.+.. .+++ ..++.||+||||||+.|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRL-HDGG------ERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEe-CCCc------eEEEEeCEEEEecCCCCCCC
Confidence 000 00 0111111236777777765554 45565543 2332 13799999999999999999
Q ss_pred CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 186 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++||.+...++ .. .+. +. ....| ++++|||+|.+|+|+|..+.+++
T Consensus 166 ~i~G~~~~~~~-~~-~~~--l~--------~~~~~----------k~vvVIGgG~iG~E~A~~l~~~G------------ 211 (479)
T PRK14727 166 PIPGLMDTPYW-TS-TEA--LF--------SDELP----------ASLTVIGSSVVAAEIAQAYARLG------------ 211 (479)
T ss_pred CCCCcCcccee-cc-hHH--hc--------cccCC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 99997432111 11 111 11 11122 59999999999999999999887
Q ss_pred CccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEE--ecCCcEEeccEEEEecCCCCc-cc-
Q 018704 266 DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 266 ~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~--~~~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++.++++.+++++.+.+.+.+++.||+++.+. |++++. +.+. +.++ ++++|.||+|+|++|+ .+
T Consensus 212 --~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l 288 (479)
T PRK14727 212 --SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDL 288 (479)
T ss_pred --CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCC
Confidence 89999999878888899999999999999999999994 888753 3333 3344 6999999999999999 54
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 289 ~l~~~g~~~~~~G 301 (479)
T PRK14727 289 NLEAVGVTTDTSG 301 (479)
T ss_pred CchhhCceecCCC
Confidence 466688777666
No 39
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.95 E-value=4.8e-26 Score=218.64 Aligned_cols=240 Identities=18% Similarity=0.218 Sum_probs=164.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----hhhh---------------hhh-cccccccccccchh-
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLA---------------STC-VGTLEFRSVAEPIA- 121 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----~~~~---------------~~~-~~~~~~~~~~~~~~- 121 (351)
+||+||||||||++||.+|++.|.+|+|||+ +.+... ...+ ... .+. ........+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGI-EVENVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCC-CCCCCcCCHHH
Confidence 7999999999999999999999999999998 433111 0000 000 000 0000000000
Q ss_pred -------------ccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 122 -------------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 122 -------------~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
.....+....++.++.+.+..++ .+.+.+....... .+.||+||||||+.|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~--------~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PGTVLVTGENGEE--------TLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcE--------EEEeCEEEEcCCCCCCCCCCC
Confidence 01112333456788888777665 4455554321113 799999999999999988776
Q ss_pred -CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 189 -GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 189 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
+.+.. .+.+..+...+ . ...++++|||||.+|+|+|..|.+++
T Consensus 150 ~~~~~~--~~~~~~~~~~~----------~----------~~~~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (461)
T TIGR01350 150 FDFDGE--VVITSTGALNL----------K----------EVPESLVIIGGGVIGIEFASIFASLG-------------- 193 (461)
T ss_pred CCCCCc--eEEcchHHhcc----------c----------cCCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 43211 12222222211 1 12259999999999999999998876
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEE--ecCC--cEEeccEEEEecCCCCc-c-
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLI--LNDG--TEVPYGLLVWSTGVGPS-T- 337 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~--~~~g--~~~~~D~vi~a~G~~p~-~- 337 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++. +++. +.+| +++++|.||+|+|.+|+ +
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 899999997 47788889999999999999999999994 887753 4443 3466 47999999999999999 5
Q ss_pred -ccccCCCCCCCCC
Q 018704 338 -LVKSLDLPKSPGG 350 (351)
Q Consensus 338 -~~~~~gl~~~~~G 350 (351)
+++.++++++++|
T Consensus 274 l~~~~~gl~~~~~g 287 (461)
T TIGR01350 274 LGLENLGVELDERG 287 (461)
T ss_pred CCcHhhCceECCCC
Confidence 5777788777665
No 40
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.95 E-value=4.2e-27 Score=224.25 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=163.7
Q ss_pred cceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhh
Q 018704 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC 107 (351)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~ 107 (351)
....+.++++..+..... .............++|+|||||++||++|..|++.|++|+|||+.+...... .
T Consensus 103 ~v~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l-----~ 173 (449)
T TIGR01316 103 PVSIGALERFVADWERQH----GIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV-----T 173 (449)
T ss_pred CccHHHHHHHHHhHHHhc----CCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe-----e
Confidence 345666777766543211 1111111223456899999999999999999999999999999876532110 0
Q ss_pred cccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCCC
Q 018704 108 VGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFG 186 (351)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~ 186 (351)
.+.+.+. +...+...........++.++...+. .+.+.+ . +. ...||+||||||+ .|+.|+
T Consensus 174 ~gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~~v-----~~~v~~---~-~~--------~~~yd~viiAtGa~~p~~~~ 235 (449)
T TIGR01316 174 YGIPEFR-LPKEIVVTEIKTLKKLGVTFRMNFLV-----GKTATL---E-EL--------FSQYDAVFIGTGAGLPKLMN 235 (449)
T ss_pred ecCCCcc-CCHHHHHHHHHHHHhCCcEEEeCCcc-----CCcCCH---H-HH--------HhhCCEEEEeCCCCCCCcCC
Confidence 1111111 11111111112223446777665433 122222 1 11 3469999999998 699999
Q ss_pred CCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
+||.+ .++++..++.....+. ...+.|... .....+++|+|||||++|+|+|..+.++|
T Consensus 236 ipG~~~~gv~~~~~~l~~~~~~-------~~~~~~~~~-~~~~~gk~VvVIGgG~~a~d~A~~l~~~G------------ 295 (449)
T TIGR01316 236 IPGEELCGVYSANDFLTRANLM-------KAYEFPHAD-TPVYAGKSVVVIGGGNTAVDSARTALRLG------------ 295 (449)
T ss_pred CCCCCCCCcEEHHHHHHHHhhc-------ccccccccC-CcccCCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 99975 2333322222111110 011111000 00124579999999999999999999887
Q ss_pred CccEEEEEeCCCC--CCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEec---------CC--------
Q 018704 266 DYIHVTLIEANEI--LSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILN---------DG-------- 319 (351)
Q Consensus 266 ~~~~v~~~~~~~~--l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~~---------~g-------- 319 (351)
.+|+++++... ++.. ....+.+++.||+++++. ++++.. + +|.+. +|
T Consensus 296 --~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~ 368 (449)
T TIGR01316 296 --AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCG 368 (449)
T ss_pred --CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecC
Confidence 78999998632 2221 223356788899999984 777753 1 23332 23
Q ss_pred ---cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 320 ---TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 320 ---~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 369 ~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G 403 (449)
T TIGR01316 369 DAECKLEADAVIVAIGNGSNPIMAETTRLKTSERG 403 (449)
T ss_pred CceEEEECCEEEECCCCCCCchhhhccCcccCCCC
Confidence 26899999999999999 78888888888766
No 41
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.95 E-value=2.9e-26 Score=219.47 Aligned_cols=240 Identities=22% Similarity=0.292 Sum_probs=163.5
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc---c---h---hhhh----------hhcccccc-----cccccc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF---T---P---LLAS----------TCVGTLEF-----RSVAEP 119 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~---~---~---~~~~----------~~~~~~~~-----~~~~~~ 119 (351)
+|+||||||||++||.+|++.|.+|+|||++....- . | ++.. ...|.... .++..-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 799999999999999999999999999998643210 0 0 0000 00111100 011100
Q ss_pred h----------hccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 120 I----------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 120 ~----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
. ..-...+....++.++.+++..++ .+.+.+.. +++. .++.||+||||||+.|+.|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~-~~~~-------~~~~~d~lviATGs~p~~~p~~~ 151 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEY-GDKE-------EVVDAEQFIIAAGSEPTELPFAP 151 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc--CCEEEEee-CCCc-------EEEECCEEEEeCCCCCCCCCCCC
Confidence 0 011122334557888888887775 45555543 2221 27999999999999998887777
Q ss_pred cc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 190 VK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 190 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
.+ ..+++. .++.. +...| ++++|||||++|+|+|..+.+++ .
T Consensus 152 ~~~~~v~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g--------------~ 194 (458)
T PRK06912 152 FDGKWIINS---KHAMS----------LPSIP----------SSLLIVGGGVIGCEFASIYSRLG--------------T 194 (458)
T ss_pred CCCCeEEcc---hHHhC----------ccccC----------CcEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 64 223322 12211 12223 49999999999999999998776 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--eEEec-CC--cEEeccEEEEecCCCCc-cc--
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPS-TL-- 338 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~v~~~-~g--~~~~~D~vi~a~G~~p~-~~-- 338 (351)
+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++.+ .+.+. +| .++++|.||+|+|.+|+ ++
T Consensus 195 ~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~ 274 (458)
T PRK06912 195 KVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN 274 (458)
T ss_pred eEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC
Confidence 99999997 57788889999999999999999999995 8888653 34443 44 36899999999999999 43
Q ss_pred cccCCCCCCCCC
Q 018704 339 VKSLDLPKSPGG 350 (351)
Q Consensus 339 ~~~~gl~~~~~G 350 (351)
++..|++.+++|
T Consensus 275 l~~~gv~~~~~g 286 (458)
T PRK06912 275 LEKAGVQFSNKG 286 (458)
T ss_pred chhcCceecCCC
Confidence 355566655443
No 42
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=6.2e-26 Score=217.46 Aligned_cols=243 Identities=21% Similarity=0.268 Sum_probs=157.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----------hh-----hhhhc-------cccc--ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----------LL-----ASTCV-------GTLE--FRSVA 117 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----------~~-----~~~~~-------~~~~--~~~~~ 117 (351)
++||+||||||||++||.++++.|.+|+|||++..+...- ++ ..... |... ..++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 4899999999999999999999999999999744322110 00 00000 0000 00010
Q ss_pred cch----------hccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 118 EPI----------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 118 ~~~----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
..+ ..-........++.++.+.. .++ +.+.+.+.. .+++ ..++.||+||||||+.|. .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~-~~~~v~v~~-~~g~------~~~~~~d~lVIATGs~p~--~i 151 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLD-GVGKVVVKA-EDGS------ETQLEAKDIVIATGSEPT--PL 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc-cCCEEEEEc-CCCc------eEEEEeCEEEEeCCCCCC--CC
Confidence 000 01111222334577776654 232 234455432 2332 127999999999999885 35
Q ss_pred CCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
||.+ +....+ +..++. .+... .++++|||||.+|+|+|..+.+++
T Consensus 152 pg~~~~~~~~~-~~~~~~----------~~~~~----------~~~vvIIGgG~ig~E~A~~l~~~G------------- 197 (466)
T PRK06115 152 PGVTIDNQRII-DSTGAL----------SLPEV----------PKHLVVIGAGVIGLELGSVWRRLG------------- 197 (466)
T ss_pred CCCCCCCCeEE-CHHHHh----------CCccC----------CCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 6653 111111 111111 11122 359999999999999999999877
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE--Eec---C--CcEEeccEEEEecCCCC
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILN---D--GTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v--~~~---~--g~~~~~D~vi~a~G~~p 335 (351)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++. |++++. +++ .+. + ++++++|.||+|+|++|
T Consensus 198 -~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 198 -AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred -CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 899999986 57888999999999999999999999994 888874 343 332 2 35799999999999999
Q ss_pred c-cc--cccCCCCCCCCC
Q 018704 336 S-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 336 ~-~~--~~~~gl~~~~~G 350 (351)
+ .. ++..|++++++|
T Consensus 277 n~~~l~~~~~g~~~~~~G 294 (466)
T PRK06115 277 YTQGLGLETVGLETDKRG 294 (466)
T ss_pred ccccCCcccccceeCCCC
Confidence 9 53 455567666554
No 43
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.3e-26 Score=201.45 Aligned_cols=243 Identities=19% Similarity=0.237 Sum_probs=172.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC---------------Cccccchhhhhhh-----ccccc----cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------------NHMVFTPLLASTC-----VGTLE----FRSV 116 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~---------------~~~~~~~~~~~~~-----~~~~~----~~~~ 116 (351)
..+|.+|||||..|+++|++.+..|.++.|+|.. .-|+|...+.... .|++. .++|
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 4689999999999999999999999999999943 3333332221111 11111 1223
Q ss_pred ccchhccchhhhcCCC----------eEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 117 AEPIARIQPAISREPG----------SYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~----------~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..-.+....++.+..+ +..+.+...-+++.+-.+.+ .++. +..+++.+++||||..|.+|+
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~---~d~~------~~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEV---NDGT------KIVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEe---cCCe------eEEEecceEEEEeCCccCCCC
Confidence 2223333333333333 33444444434443334433 2342 236999999999999999999
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
|||. +..+.++...+ +.+.| ||++|||+|++|+|+|..++.+|
T Consensus 170 IpG~-E~gidSDgff~-------------Lee~P----------kr~vvvGaGYIavE~Agi~~gLg------------- 212 (478)
T KOG0405|consen 170 IPGA-ELGIDSDGFFD-------------LEEQP----------KRVVVVGAGYIAVEFAGIFAGLG------------- 212 (478)
T ss_pred CCch-hhccccccccc-------------hhhcC----------ceEEEEccceEEEEhhhHHhhcC-------------
Confidence 9998 66676665543 33444 39999999999999999999998
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCc---
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS--- 336 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~--- 336 (351)
.+++++.|. ..|+.||+.+...+.++++..||++|.++ ++++.. + .+....|....+|.++||+|+.|+
T Consensus 213 -sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 213 -SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred -CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc
Confidence 999999997 58999999999999999999999999995 777754 2 334455654559999999999999
Q ss_pred cccccCCCCCCCCC
Q 018704 337 TLVKSLDLPKSPGG 350 (351)
Q Consensus 337 ~~~~~~gl~~~~~G 350 (351)
--++..|+++|+.|
T Consensus 292 L~le~vGVk~~~~g 305 (478)
T KOG0405|consen 292 LNLENVGVKTDKNG 305 (478)
T ss_pred ccchhcceeeCCCC
Confidence 23456678888776
No 44
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.95 E-value=3.8e-26 Score=219.60 Aligned_cols=231 Identities=24% Similarity=0.288 Sum_probs=157.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------hh---hh------h----hhcccc------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL---LA------S----TCVGTL------EFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~~---~~------~----~~~~~~------~~~ 114 (351)
..+||+||||||||++||.+|++.|.+|+|||+.. +... |. +. . ...|.. ++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 35899999999999999999999999999999853 2111 00 00 0 000100 110
Q ss_pred ccccc-------hhccchhhhcCCCeEEEEEEeeeEeCC-----CCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
.+... +......+....++.++.+.+..++.. .+.+.+.. .++. ...+.||+||||||+.|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~-~~g~------~~~~~~d~lViATGs~p 154 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVET-ETGE------NEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEe-CCCc------eEEEEcCEEEEeCCCCC
Confidence 00000 111112233456899999999988876 33565543 2331 12799999999999998
Q ss_pred CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 018704 183 STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (351)
Q Consensus 183 ~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~ 261 (351)
..++....+ ..+++ ..++.. +...| ++++|||||++|+|+|..|.+++
T Consensus 155 ~~~p~~~~~~~~~~~---~~~~~~----------~~~~~----------~~vvIIGgG~~G~E~A~~l~~~g-------- 203 (472)
T PRK05976 155 VELPGLPFDGEYVIS---SDEALS----------LETLP----------KSLVIVGGGVIGLEWASMLADFG-------- 203 (472)
T ss_pred CCCCCCCCCCceEEc---chHhhC----------ccccC----------CEEEEECCCHHHHHHHHHHHHcC--------
Confidence 754222111 11222 222211 11122 49999999999999999999877
Q ss_pred cCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEe---CCeE---EecCCc--EEeccEEEEec
Q 018704 262 SHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD---SQKL---ILNDGT--EVPYGLLVWST 331 (351)
Q Consensus 262 ~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~---~~~v---~~~~g~--~~~~D~vi~a~ 331 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++ .+++ .+.+|+ ++++|.||+|+
T Consensus 204 ------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 204 ------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred ------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 899999997 57788899999999999999999999995 88886 3433 234663 69999999999
Q ss_pred CCCCc
Q 018704 332 GVGPS 336 (351)
Q Consensus 332 G~~p~ 336 (351)
|.+|+
T Consensus 278 G~~p~ 282 (472)
T PRK05976 278 GRRPN 282 (472)
T ss_pred CCccC
Confidence 99999
No 45
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.94 E-value=3.2e-26 Score=221.77 Aligned_cols=240 Identities=17% Similarity=0.200 Sum_probs=158.1
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc--chhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF--TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
...+||+|||||||||+||.+|++.|++|+|||..-.... ...+... .+.+. ... ..+.+.........++.++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~-~~~~~-~~~-~~l~~~l~~~l~~~gv~i~~ 286 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENL-ISVPY-TTG-SQLAANLEEHIKQYPIDLME 286 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccc-cccCC-CCH-HHHHHHHHHHHHHhCCeEEc
Confidence 4468999999999999999999999999999975311000 0001100 01110 111 11122222222334666654
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
.+|+.++.+.+.+.+.. .++. .+.||+||+|||+.|+.|++||..+.. ...+.....+.+.+
T Consensus 287 ~~~V~~I~~~~~~~~v~~-~~g~--------~i~~d~lIlAtGa~~~~~~ipG~~~~~--~~~v~~~~~~~~~~------ 349 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTL-ESGE--------VLKAKSVIVATGARWRKLGVPGEKEYI--GKGVAYCPHCDGPF------ 349 (515)
T ss_pred CCEEEEEEecCCeEEEEE-CCCC--------EEEeCEEEECCCCCcCCCCCCCHHHcC--CCeEEEeeccChhh------
Confidence 58888987776666543 4555 799999999999999999999863211 11110000000111
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
..+++|+|||||++|+|+|..|..++ .+|+++++.+.+. ....+.+.+++
T Consensus 350 -----------~~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~~l~~ 399 (515)
T TIGR03140 350 -----------FKGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQDKLKS 399 (515)
T ss_pred -----------cCCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHHHHhc
Confidence 23469999999999999999998876 8999999865332 12345666665
Q ss_pred -cCcEEEcCe-EEEEeCC-----eEEecC---C--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 -SGVRLVRGI-VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 -~gV~~~~~~-v~~v~~~-----~v~~~~---g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.+. ++++.++ +|.+.+ | +++++|.||+|+|++|+ ++++.+ ++++++|
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G 465 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRG 465 (515)
T ss_pred CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCC
Confidence 699999995 8888764 366643 2 46899999999999999 788765 7766655
No 46
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.94 E-value=3.7e-26 Score=219.60 Aligned_cols=243 Identities=19% Similarity=0.231 Sum_probs=162.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcC------CCccccc-------hh---hh------hh-----hcccccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP------RNHMVFT-------PL---LA------ST-----CVGTLEF- 113 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~------~~~~~~~-------~~---~~------~~-----~~~~~~~- 113 (351)
.+||+||||||||++||.++++.|.+|+|||+ ...+... |. +. .. ..|....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 58999999999999999999999999999998 1111110 10 00 00 0010000
Q ss_pred --ccccc----------chhccchhhhcCCCeEEEEEEeeeEeCC--CCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 114 --RSVAE----------PIARIQPAISREPGSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 114 --~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
.++.. .+......+....++.++.+.+..++.. .+.+.+.. .++. .+.||+||||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~-~~~~--------~~~~d~lViATG 154 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTG-EDET--------VITAKHVIIATG 154 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEec-CCCe--------EEEeCEEEEeCC
Confidence 00000 0111122334456788888888877744 34454421 2233 799999999999
Q ss_pred CCcCCCC-CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH
Q 018704 180 AEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (351)
Q Consensus 180 ~~p~~p~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~ 258 (351)
+.|+.++ ++......+.. .+... +... .++++|||+|++|+|+|..+.+++
T Consensus 155 s~p~~~p~~~~~~~~~~~~---~~~~~----------~~~~----------~~~vvVvGgG~~g~E~A~~l~~~g----- 206 (475)
T PRK06327 155 SEPRHLPGVPFDNKIILDN---TGALN----------FTEV----------PKKLAVIGAGVIGLELGSVWRRLG----- 206 (475)
T ss_pred CCCCCCCCCCCCCceEECc---HHHhc----------cccc----------CCeEEEECCCHHHHHHHHHHHHcC-----
Confidence 9987543 32211112221 11111 1112 259999999999999999998877
Q ss_pred hhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC--e--EEecC--C--cEEeccEEE
Q 018704 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND--G--TEVPYGLLV 328 (351)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~--~--v~~~~--g--~~~~~D~vi 328 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+ +|++++.+ + +.+.+ | .++++|.|+
T Consensus 207 ---------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl 277 (475)
T PRK06327 207 ---------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLI 277 (475)
T ss_pred ---------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEE
Confidence 899999997 4677788999999999999999999999 49888643 3 34444 3 469999999
Q ss_pred EecCCCCc-c--ccccCCCCCCCCC
Q 018704 329 WSTGVGPS-T--LVKSLDLPKSPGG 350 (351)
Q Consensus 329 ~a~G~~p~-~--~~~~~gl~~~~~G 350 (351)
+|+|++|+ + .++.+|++++++|
T Consensus 278 ~a~G~~p~~~~l~~~~~g~~~~~~G 302 (475)
T PRK06327 278 VSIGRVPNTDGLGLEAVGLKLDERG 302 (475)
T ss_pred EccCCccCCCCCCcHhhCceeCCCC
Confidence 99999999 5 3456778777665
No 47
>PRK12831 putative oxidoreductase; Provisional
Probab=99.94 E-value=9e-27 Score=222.38 Aligned_cols=271 Identities=17% Similarity=0.188 Sum_probs=163.0
Q ss_pred CcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhh
Q 018704 27 SNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST 106 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~ 106 (351)
.++....++++..+.+.... +.. ..+.....++|+|||||||||+||.+|++.|++|+|+|+.+......
T Consensus 110 ~~v~I~~l~r~~~~~~~~~~----~~~-~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l----- 179 (464)
T PRK12831 110 EPVAIGKLERFVADWARENG----IDL-SETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL----- 179 (464)
T ss_pred CCeehhHHHHHHHHHHHHcC----CCC-CCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCee-----
Confidence 34556677777766433211 111 12223456899999999999999999999999999999876532110
Q ss_pred hcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCC
Q 018704 107 CVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTF 185 (351)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p 185 (351)
..+.+.+......+...........++.++.....+ +.+.+ ++.. ..+.||+||||||+ .|+.+
T Consensus 180 ~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~---~~~~-------~~~~~d~viiAtGa~~~~~l 244 (464)
T PRK12831 180 VYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTI---DELL-------EEEGFDAVFIGSGAGLPKFM 244 (464)
T ss_pred eecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCH---HHHH-------hccCCCEEEEeCCCCCCCCC
Confidence 012222211111122211122333467766554331 12211 1111 14579999999998 59999
Q ss_pred CCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 GIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
++||.+ +++++..++.....+... +. +.. ......+++|+|||||++|+|+|..+.++|
T Consensus 245 ~ipG~~~~gV~~~~~~l~~~~~~~~------~~--~~~-~~~~~~gk~VvVIGgG~va~d~A~~l~r~G----------- 304 (464)
T PRK12831 245 GIPGENLNGVFSANEFLTRVNLMKA------YK--PEY-DTPIKVGKKVAVVGGGNVAMDAARTALRLG----------- 304 (464)
T ss_pred CCCCcCCcCcEEHHHHHHHHHhccc------cc--ccc-cCcccCCCeEEEECCcHHHHHHHHHHHHcC-----------
Confidence 999975 344443332222111100 00 000 001134579999999999999999999988
Q ss_pred CCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C----eEEec------------------
Q 018704 265 KDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q----KLILN------------------ 317 (351)
Q Consensus 265 ~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~----~v~~~------------------ 317 (351)
.+|+++++.. .++....++ +.+++.||+++++. ++++.. + +|.+.
T Consensus 305 ---a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~ 376 (464)
T PRK12831 305 ---AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEI 376 (464)
T ss_pred ---CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceec
Confidence 7899999863 333322221 34567899999984 777642 1 13221
Q ss_pred CCc--EEeccEEEEecCCCCc-ccccc-CCCCCCCCC
Q 018704 318 DGT--EVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGG 350 (351)
Q Consensus 318 ~g~--~~~~D~vi~a~G~~p~-~~~~~-~gl~~~~~G 350 (351)
+|+ ++++|.||+|+|+.|+ .++.. .|++++++|
T Consensus 377 ~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G 413 (464)
T PRK12831 377 EGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRG 413 (464)
T ss_pred CCceEEEECCEEEECCCCCCChhhhcccCCceECCCC
Confidence 222 5899999999999999 66665 678777665
No 48
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=6.2e-26 Score=217.78 Aligned_cols=241 Identities=21% Similarity=0.286 Sum_probs=156.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc------cch---hhhh-----hh------ccccc--ccccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV------FTP---LLAS-----TC------VGTLE--FRSVAEP 119 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~------~~~---~~~~-----~~------~~~~~--~~~~~~~ 119 (351)
.+||+||||||||++||.+|++.|.+|+|||++.... ..| ++.. .. .+... ..++...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 83 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence 4899999999999999999999999999999852110 001 0000 00 00000 0000000
Q ss_pred hhc----------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 120 IAR----------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 120 ~~~----------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
..+ -...+....++..+.+...- .+.+.+.+.. .+++ ..++.||+||||||+.|+.| ||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~--~~~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~--pg 152 (466)
T PRK07818 84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTF--TDANTLEVDL-NDGG------TETVTFDNAIIATGSSTRLL--PG 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE--cCCCEEEEEe-cCCC------eeEEEcCEEEEeCCCCCCCC--CC
Confidence 000 00011112244444443222 3456666643 2221 12799999999999998764 55
Q ss_pred cc--ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 190 VK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 190 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
.+ ..++++ .+. +.....| ++++|||||.+|+|+|..+.+++
T Consensus 153 ~~~~~~v~~~---~~~----------~~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~G-------------- 195 (466)
T PRK07818 153 TSLSENVVTY---EEQ----------ILSRELP----------KSIVIAGAGAIGMEFAYVLKNYG-------------- 195 (466)
T ss_pred CCCCCcEEch---HHH----------hccccCC----------CeEEEECCcHHHHHHHHHHHHcC--------------
Confidence 43 222221 111 0111122 49999999999999999999887
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--e--EEec--CC--cEEeccEEEEecCCCCc-
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS- 336 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~--v~~~--~g--~~~~~D~vi~a~G~~p~- 336 (351)
.+|+++++. ++++.+++++.+.+.+.+++.||+++.+. |++++.+ . +.+. +| +++++|.||+|+|++|+
T Consensus 196 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 196 VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 899999986 57888899999999999999999999994 8888653 2 3443 66 36999999999999999
Q ss_pred cc--cccCCCCCCCCC
Q 018704 337 TL--VKSLDLPKSPGG 350 (351)
Q Consensus 337 ~~--~~~~gl~~~~~G 350 (351)
++ ++..|++++++|
T Consensus 276 ~~l~l~~~g~~~~~~g 291 (466)
T PRK07818 276 EGYGLEKTGVALTDRG 291 (466)
T ss_pred CCCCchhcCcEECCCC
Confidence 53 567777776665
No 49
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.94 E-value=6.7e-26 Score=217.54 Aligned_cols=238 Identities=24% Similarity=0.291 Sum_probs=158.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----------hh---------hh-hccc------cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----------LA---------ST-CVGT------LEFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----------~~---------~~-~~~~------~~~~ 114 (351)
.++||+||||||+|++||.+|++.|.+|+|||++ .+..... +. .. ..+. ..+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 3589999999999999999999999999999984 3211100 00 00 0010 0111
Q ss_pred ccccchhccc--------hhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 115 SVAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 115 ~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.+........ .......++.++.+.+..++. +.+.+ ++. ++.||+||||||+. .|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v----~~~--------~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV----NGE--------RIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE----CcE--------EEEeCEEEEeCCCC--CCC
Confidence 1111111111 111233456677666655543 34443 333 79999999999998 556
Q ss_pred CCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
+||... ....+.+..+...+ . ...++++|||+|++|+|+|..|.+++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~----------~----------~~~k~v~VIGgG~~g~E~A~~l~~~g------------ 192 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL----------D----------KLPKSLAVIGGGVIGLELGQALSRLG------------ 192 (460)
T ss_pred CCCCcccCCCcEECchHHhCc----------c----------ccCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 666521 11111122222111 1 12259999999999999999999887
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---eEEe--cCC--cEEeccEEEEecCCCCc
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---~v~~--~~g--~~~~~D~vi~a~G~~p~ 336 (351)
.+|+++++. .+++.+++++.+.+.+.+++. |+++++. |++++.+ .+.+ .++ .++++|.|++|+|++|+
T Consensus 193 --~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 193 --VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred --CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 899999997 477888999999999999999 9999994 8888643 3553 233 46999999999999999
Q ss_pred -c--ccccCCCCCCCCC
Q 018704 337 -T--LVKSLDLPKSPGG 350 (351)
Q Consensus 337 -~--~~~~~gl~~~~~G 350 (351)
+ .++.+|++++++|
T Consensus 270 ~~~l~l~~~g~~~~~~g 286 (460)
T PRK06292 270 TDGLGLENTGIELDERG 286 (460)
T ss_pred CCCCCcHhhCCEecCCC
Confidence 5 3567788777665
No 50
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=201.52 Aligned_cols=239 Identities=22% Similarity=0.370 Sum_probs=188.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccch-hhhhhhcccccccccccchhccchhhhcCCCeEE-EE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYF-FL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 137 (351)
..+++|||+|++|..|+..+++.|+ +++++-+..+++|.+ .++.... .....+....+.+....++.+ +.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~------~~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLL------TVGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhccccee------eccccccccChhhHhhcCceEEEc
Confidence 5799999999999999999999776 588887777777653 2222221 111222222233344445554 55
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
..|+++|...+++.+ ++|+ ++.|++++||||+.+++|++||.+ +++..+++++++..+...+
T Consensus 148 t~v~~~D~~~K~l~~---~~Ge--------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~------ 210 (478)
T KOG1336|consen 148 TSVVKADLASKTLVL---GNGE--------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAI------ 210 (478)
T ss_pred ceeEEeeccccEEEe---CCCc--------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHh------
Confidence 699999999999987 5677 999999999999999999999997 7788889999888877665
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQL 294 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l 294 (351)
...++|+|+|+|.+|+|+|..|.... .+||++++.. .++ -+.+.+.+.+++++
T Consensus 211 -----------~~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 211 -----------QLGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred -----------ccCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHH
Confidence 23458999999999999999998754 8999999974 333 57789999999999
Q ss_pred hhcCcEEEcCe-EEEEeCC------eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPG 349 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~~------~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~ 349 (351)
+++||+++.++ +.+++.+ .|.+.||++++||.||+.+|.+|+ ++++. |.-.++.
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~ 327 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSK 327 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceeccc
Confidence 99999999997 8888653 578899999999999999999999 77774 4333433
No 51
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.94 E-value=3.1e-25 Score=210.96 Aligned_cols=236 Identities=19% Similarity=0.315 Sum_probs=179.2
Q ss_pred HHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEEE-EEEeeeEeCCCCEEE
Q 018704 76 RLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHCAGIDTDNHVVH 151 (351)
Q Consensus 76 ~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~v~ 151 (351)
+||.+|++. +.+|+|||+++.+.|.+. ++....+...... ..+......+....++.++ ..+|+.++++.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRN--KLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHH--HcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 478888875 578999999999887763 4443333222110 1111111223334467764 679999999999988
Q ss_pred EEeecCccccCCCceeEee--ccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhc
Q 018704 152 CETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~--~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 228 (351)
+....++. .+. ||+||||||+.|+.|++||++ +.++...++.++..+++.+.. .
T Consensus 79 ~~~~~~~~--------~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~ 135 (427)
T TIGR03385 79 VRNNKTNE--------TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------N 135 (427)
T ss_pred EEECCCCC--------EEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------c
Confidence 86433333 566 999999999999999999986 567777888888777766421 2
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C-CCCCcHHHHHHHHHHhhhcCcEEEcCe-
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-LSSFDDRLRHYATTQLSKSGVRLVRGI- 305 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-l~~~~~~~~~~~~~~l~~~gV~~~~~~- 305 (351)
..++|+|||||++|+|+|..|.+.+ .+|+++++.. + .+.+++++.+.+.+.+++.||+++.+.
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~ 201 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE 201 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 3469999999999999999998776 7899999974 4 466888889999999999999999994
Q ss_pred EEEEeCCe--EEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 306 VKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 306 v~~v~~~~--v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
|++++.++ +.+.+|+++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 202 v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G 249 (427)
T TIGR03385 202 VDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETG 249 (427)
T ss_pred EEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCC
Confidence 99987643 36778889999999999999999 89999899887766
No 52
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.94 E-value=1.6e-25 Score=217.13 Aligned_cols=236 Identities=17% Similarity=0.205 Sum_probs=157.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc--hhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
...+||+|||||||||+||.+|++.|++|+||++.....+. ..+... .+. ..... ..+...........++.++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~-~~~-~~~~~-~~l~~~l~~~~~~~gv~i~~ 285 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENF-ISV-PETEG-PKLAAALEEHVKEYDVDIMN 285 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCccccc-CCC-CCCCH-HHHHHHHHHHHHHCCCEEEc
Confidence 34689999999999999999999999999999864111110 001000 000 01111 11222222223333566554
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc----ccccCCHHHHHHHHHHHHH
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN----ATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~----~~~~~~~~~~~~~~~~~~~ 212 (351)
.+|+.++.....+.+.. .++. .+.||.||+|||+.|+.|++||.++. +...... .+..
T Consensus 286 ~~~V~~I~~~~~~~~V~~-~~g~--------~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~------~~~~-- 348 (517)
T PRK15317 286 LQRASKLEPAAGLIEVEL-ANGA--------VLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC------DGPL-- 348 (517)
T ss_pred CCEEEEEEecCCeEEEEE-CCCC--------EEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc------Cchh--
Confidence 58999988766666543 4555 79999999999999999999986421 1111110 0100
Q ss_pred hhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHH
Q 018704 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (351)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~ 292 (351)
.++++|+|||||++|+|+|..|..++ .+|+++++++.+.. .+.+.+
T Consensus 349 ---------------~~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l~~ 394 (517)
T PRK15317 349 ---------------FKGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVLQD 394 (517)
T ss_pred ---------------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHHHH
Confidence 24469999999999999999999876 89999998754321 133445
Q ss_pred Hhhh-cCcEEEcCe-EEEEeCC-----eEEec---CC--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 293 QLSK-SGVRLVRGI-VKDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 293 ~l~~-~gV~~~~~~-v~~v~~~-----~v~~~---~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+.+ .||+++.+. +.++.++ .+.+. +| +++++|.|++++|++|+ +|++.. ++++++|
T Consensus 395 ~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g 464 (517)
T PRK15317 395 KLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRG 464 (517)
T ss_pred HHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCC
Confidence 5554 699999995 8888765 35554 33 35899999999999999 788765 6666655
No 53
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.94 E-value=1.2e-25 Score=219.40 Aligned_cols=240 Identities=17% Similarity=0.175 Sum_probs=154.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhccccccccc-ccchhccchhhhcCCCeEEEEEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
.+||+|||||||||+||.+|++.|++|+|||++......... ......+..... ...+.+.........++.++..+|
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~-~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V 82 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITIT-SEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEV 82 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEec-cccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEE
Confidence 489999999999999999999999999999986532111100 000011111100 011222222233344677888899
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (351)
+.++.+.+.+.+.+ .++ .+.|++||||||+.|+.|++||.+.. ....+..+..+.+..
T Consensus 83 ~~i~~~~~~~~V~~-~~g---------~~~a~~lVlATGa~p~~~~ipG~~~~--~~~~v~~~~~~~~~~---------- 140 (555)
T TIGR03143 83 LDVDFDGDIKTIKT-ARG---------DYKTLAVLIATGASPRKLGFPGEEEF--TGRGVAYCATCDGEF---------- 140 (555)
T ss_pred EEEEecCCEEEEEe-cCC---------EEEEeEEEECCCCccCCCCCCCHHHh--CCceEEEEeecChhh----------
Confidence 99998776555543 223 68899999999999999999996421 111110000000111
Q ss_pred CCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcE
Q 018704 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (351)
Q Consensus 221 ~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (351)
..+++++|||||++|+|+|..|.+++ .+|+++++.+.+. ..... ..+.+++.||+
T Consensus 141 -------~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~-~~~~~---~~~~~~~~gV~ 195 (555)
T TIGR03143 141 -------FTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFT-CAKLI---AEKVKNHPKIE 195 (555)
T ss_pred -------cCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCccc-cCHHH---HHHHHhCCCcE
Confidence 23469999999999999999998876 8999999975321 12222 22334456999
Q ss_pred EEcCe-EEEEeCC-e---EEe---cCCcEE----eccE----EEEecCCCCc-cccccCCCCCCCCC
Q 018704 301 LVRGI-VKDVDSQ-K---LIL---NDGTEV----PYGL----LVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 301 ~~~~~-v~~v~~~-~---v~~---~~g~~~----~~D~----vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
++++. |+++.++ . +.+ .+|++. ++|. ||+|+|++|+ .+++. +++++++|
T Consensus 196 i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G 261 (555)
T TIGR03143 196 VKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRG 261 (555)
T ss_pred EEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCC
Confidence 99995 9998764 2 222 356543 3676 9999999999 66654 56776655
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.93 E-value=3.7e-25 Score=222.35 Aligned_cols=276 Identities=16% Similarity=0.181 Sum_probs=166.6
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|+..+.+... -.++....+.+++.+...... ...+ ..+......++|+|||||||||+||+.|++.|++|+|+|+
T Consensus 495 ~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~-~~~~--~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek 570 (1019)
T PRK09853 495 QCQYNCTRLDY-DEAVNIRELKKVALEKGWDEY-KQRW--HKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFER 570 (1019)
T ss_pred hhHHHhcCCCC-CCCeeccHHHHHHHhhHHHhc-cccc--CCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 45555554432 245566777777765432110 0011 0111224568999999999999999999999999999998
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+..... +. .+.+.+......+...... ....++.+..+....+ .+ .+.. ...||+
T Consensus 571 ~~~~GG~--lr---~~IP~~Rlp~evL~~die~-l~~~GVe~~~gt~Vdi-------~l---e~L~--------~~gYDa 626 (1019)
T PRK09853 571 EENAGGV--VK---NIIPQFRIPAELIQHDIEF-VKAHGVKFEFGCSPDL-------TV---EQLK--------NEGYDY 626 (1019)
T ss_pred ccccCcc--ee---eecccccccHHHHHHHHHH-HHHcCCEEEeCceeEE-------Eh---hhhe--------eccCCE
Confidence 8764211 10 1122222111122222222 2334677765533211 11 1122 567999
Q ss_pred EEEecCCC-cCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH
Q 018704 174 LVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 174 lviAtG~~-p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~ 252 (351)
||||||+. ++.+++||.+++++. .++....+.+. .. ....+++|+|||||++|+|+|..+.++
T Consensus 627 VILATGA~~~~~l~IpG~~~gV~s--aldfL~~~k~~-------~~-------~~~~GKrVVVIGGGnVAmD~Ar~a~Rl 690 (1019)
T PRK09853 627 VVVAIGADKNGGLKLEGGNQNVIK--ALPFLEEYKNK-------GT-------ALKLGKHVVVVGGGNTAMDAARAALRV 690 (1019)
T ss_pred EEECcCCCCCCCCCCCCccCCcee--hHHHHHHHhhh-------cc-------cccCCCEEEEECCChHHHHHHHHHHhc
Confidence 99999997 566688886543332 12222211110 00 013457999999999999999988776
Q ss_pred HHHHHHhhhcCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC-CeEE-------------
Q 018704 253 IMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-QKLI------------- 315 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~-~~v~------------- 315 (351)
+. ..+|++++|+ ..++..+.++.. . .+.||+++.+. +.++.. +.+.
T Consensus 691 gG------------akeVTLVyRr~~~~MPA~~eEle~----A-leeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~G 753 (1019)
T PRK09853 691 PG------------VEKVTVVYRRTKQEMPAWREEYEE----A-LEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESG 753 (1019)
T ss_pred CC------------CceEEEEEccCcccccccHHHHHH----H-HHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCC
Confidence 30 1489999996 355655444322 2 34699999884 666652 2221
Q ss_pred ------ecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 316 ------LNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 316 ------~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
..++.++++|.||+|+|+.|+ ++++..|++++++|
T Consensus 754 r~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G 795 (1019)
T PRK09853 754 RRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKG 795 (1019)
T ss_pred ceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCC
Confidence 123357999999999999999 88888888877766
No 55
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.93 E-value=1.6e-24 Score=206.90 Aligned_cols=237 Identities=18% Similarity=0.232 Sum_probs=155.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc----cc-----hhh-----hhh-----hccc------cccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV----FT-----PLL-----AST-----CVGT------LEFRSV 116 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~----~~-----~~~-----~~~-----~~~~------~~~~~~ 116 (351)
++||+|||+||+|+.||..+ .|.+|+|||++.... +. .++ ... ..|. .++..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 48999999999999987554 699999999753110 00 000 000 0011 011111
Q ss_pred ccchhc-cc-------hhh-h--cCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 117 AEPIAR-IQ-------PAI-S--REPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 117 ~~~~~~-~~-------~~~-~--~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
...... .. ..+ . +..++.++.+...-. +.+.+.+ .++. ++.||+||||||+.|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~---~~g~--------~~~~d~lIiATGs~p~~p 146 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRT---GDGE--------EITGDQIVIAAGSRPYIP 146 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEE---CCCc--------EEEeCEEEEEECCCCCCC
Confidence 111100 00 011 1 124677776654434 4556655 2444 799999999999999888
Q ss_pred CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 186 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++++.. . ..+.+..++..+.. . .++++|||||++|+|+|..|.+++
T Consensus 147 ~~~~~~-~-~~~~~~~~~~~l~~----------~----------~k~vvVIGgG~ig~E~A~~l~~~G------------ 192 (452)
T TIGR03452 147 PAIADS-G-VRYHTNEDIMRLPE----------L----------PESLVIVGGGYIAAEFAHVFSALG------------ 192 (452)
T ss_pred CCCCCC-C-CEEEcHHHHHhhhh----------c----------CCcEEEECCCHHHHHHHHHHHhCC------------
Confidence 654421 1 22334444433321 1 249999999999999999998877
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc-cc
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-TL 338 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~-~~ 338 (351)
.+|+++++. .+++.+++++.+.+.+.+ +.+|+++++ +|++++. ++ +.+.+|+++++|.|++|+|++|+ ++
T Consensus 193 --~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 193 --TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred --CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 899999997 467778888888877655 468999999 4888863 33 45567888999999999999999 66
Q ss_pred --cccCCCCCCCCC
Q 018704 339 --VKSLDLPKSPGG 350 (351)
Q Consensus 339 --~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 270 l~~~~~gl~~~~~G 283 (452)
T TIGR03452 270 LDAEAAGVEVDEDG 283 (452)
T ss_pred cCchhcCeeECCCC
Confidence 356678877665
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.93 E-value=6.9e-25 Score=223.28 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=152.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
..++|+|||||||||+||.+|++.|++|+|||+.+..... ...|.+.+.. ...+.+.........++.|....+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~-----l~yGIP~~rl-p~~vi~~~i~~l~~~Gv~f~~n~~ 378 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV-----LRYGIPEFRL-PNQLIDDVVEKIKLLGGRFVKNFV 378 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce-----EEccCCCCcC-hHHHHHHHHHHHHhhcCeEEEeEE
Confidence 4689999999999999999999999999999997653211 1124444432 222222222233445888877655
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
.+ +.+.+. +.. ...||+||||||+. |+.+++||.+ +++++..++.......... .....
T Consensus 379 vG-----~dit~~---~l~--------~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~---~~~~~ 439 (944)
T PRK12779 379 VG-----KTATLE---DLK--------AAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGL---DDDYE 439 (944)
T ss_pred ec-----cEEeHH---Hhc--------cccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccc---ccccc
Confidence 43 333332 222 45799999999995 9999999965 3343322222111111000 00000
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~ 296 (351)
.+. ....+|+|+|||||++|+|+|..+.++| .+|++++++. .++....+ +.+ +.+
T Consensus 440 ~~~----~~~~Gk~VvVIGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e----~~~-a~e 496 (944)
T PRK12779 440 TPL----PEVKGKEVFVIGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEE----LHH-ALE 496 (944)
T ss_pred ccc----cccCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHH----HHH-HHH
Confidence 000 0125679999999999999999999988 7899999863 33332222 222 346
Q ss_pred cCcEEEcCe-EEEEeCC----eE---Ee---------c--------CC--cEEeccEEEEecCCCCccccc--cCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLVK--SLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~----~v---~~---------~--------~g--~~~~~D~vi~a~G~~p~~~~~--~~gl~~~ 347 (351)
.||+++.+. ++++..+ .+ .+ . +| .+++||.||+|+|+.|++.+. ..|++++
T Consensus 497 eGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~ 576 (944)
T PRK12779 497 EGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTN 576 (944)
T ss_pred CCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceEC
Confidence 799999884 7777432 12 11 1 22 358999999999999994332 3467777
Q ss_pred CCC
Q 018704 348 PGG 350 (351)
Q Consensus 348 ~~G 350 (351)
++|
T Consensus 577 ~~G 579 (944)
T PRK12779 577 KWG 579 (944)
T ss_pred CCC
Confidence 665
No 57
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.92 E-value=2.8e-24 Score=210.76 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=109.0
Q ss_pred EeeccEEEEecCCCcCCCCCCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHH
Q 018704 168 KISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246 (351)
Q Consensus 168 ~~~~d~lviAtG~~p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a 246 (351)
++.||+||||||+.|..|++++.+. .++++ +++..+.. .| ++++|||||.+|+|+|
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts---~d~~~l~~----------lp----------k~VvIVGgG~iGvE~A 328 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQKSVFTS---DTAVKLEG----------LQ----------NYMGIVGMGIIGLEFM 328 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCCCcEEeh---HHhhhhhh----------cC----------CceEEECCCHHHHHHH
Confidence 7999999999999999887666542 23332 33322211 12 4899999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHh-hhcCcEEEcCe-EEEEeCC----eEEe--c
Q 018704 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRGI-VKDVDSQ----KLIL--N 317 (351)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l-~~~gV~~~~~~-v~~v~~~----~v~~--~ 317 (351)
..+..++ .+|+++++. .+++.+++++.+.+.+.+ ++.||+++.+. |++++.+ .+.+ .
T Consensus 329 ~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~ 394 (659)
T PTZ00153 329 DIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHS 394 (659)
T ss_pred HHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEe
Confidence 9998877 899999997 578889999999888875 67899999995 8888653 1433 2
Q ss_pred C-------C--------cEEeccEEEEecCCCCc-cc--cccCCCCCCC
Q 018704 318 D-------G--------TEVPYGLLVWSTGVGPS-TL--VKSLDLPKSP 348 (351)
Q Consensus 318 ~-------g--------~~~~~D~vi~a~G~~p~-~~--~~~~gl~~~~ 348 (351)
+ + +++++|.||+|+|++|+ ++ ++.+++++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~ 443 (659)
T PTZ00153 395 ERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKR 443 (659)
T ss_pred ccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccC
Confidence 1 1 26999999999999999 54 3566666543
No 58
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.92 E-value=3e-25 Score=213.49 Aligned_cols=240 Identities=17% Similarity=0.221 Sum_probs=130.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh------------hhhcc----------ccccccc----
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA------------STCVG----------TLEFRSV---- 116 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~------------~~~~~----------~~~~~~~---- 116 (351)
++|+|||||++||++|+.|.+.|++++++|+++......... ..... .+.+.++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999988764332111 11100 0000000
Q ss_pred -ccchhccchhhhcCCC---eEEEEEEeeeEeCCC-----CEEEEEeecCccccCCCceeEeeccEEEEecCCC--cCCC
Q 018704 117 -AEPIARIQPAISREPG---SYFFLSHCAGIDTDN-----HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTF 185 (351)
Q Consensus 117 -~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~--p~~p 185 (351)
...+.++...++...+ ...++.+|+++.... ..|.+++..++. ..+..||+||+|||.. |++|
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~------~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGK------EETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTE------EEEEEECEEEEEE-SSSCESB-
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCe------EEEEEeCeEEEcCCCcCCCCCC
Confidence 1122233333333222 334567888886532 467776544443 2367799999999964 8888
Q ss_pred C--CCCcc---ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 018704 186 G--IHGVK---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (351)
Q Consensus 186 ~--i~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~ 260 (351)
. +||++ ..++++.++.+... -++|+|+|||+|+||+|+|.+|+..+
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~~~----------------------f~gKrVlVVG~g~Sg~DIa~el~~~a------- 206 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDPEP----------------------FKGKRVLVVGGGNSGADIAVELSRVA------- 206 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TGGG----------------------GTTSEEEEESSSHHHHHHHHHHTTTS-------
T ss_pred hhhhhhhhcCCeeEEccccCcChhh----------------------cCCCEEEEEeCCHhHHHHHHHHHHhc-------
Confidence 4 89986 34566666655433 34569999999999999999998754
Q ss_pred hcCCCCccEEEEEeCCC--CCCCC-----------------------cHHHH----------------------------
Q 018704 261 YSHVKDYIHVTLIEANE--ILSSF-----------------------DDRLR---------------------------- 287 (351)
Q Consensus 261 ~~~~~~~~~v~~~~~~~--~l~~~-----------------------~~~~~---------------------------- 287 (351)
.+|++..|+. +++.+ +..+.
T Consensus 207 -------~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~ 279 (531)
T PF00743_consen 207 -------KKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQ 279 (531)
T ss_dssp -------CCEEEECC-----------------------------------------------------------------
T ss_pred -------CCeEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5566665542 11110 00000
Q ss_pred -----HHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEE-eccEEEEecCCCCc-cccccCCCC
Q 018704 288 -----HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLP 345 (351)
Q Consensus 288 -----~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~-~~D~vi~a~G~~p~-~~~~~~gl~ 345 (351)
+.+...+....|++. ..|+++++++|+++||+++ ++|.||+|||+..+ +|+++.-++
T Consensus 280 ~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~ 343 (531)
T PF00743_consen 280 HPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIK 343 (531)
T ss_dssp -------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 111112223334433 2477888899999999876 69999999999999 998864333
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.92 E-value=1.5e-24 Score=207.56 Aligned_cols=236 Identities=19% Similarity=0.233 Sum_probs=148.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+||||||+||++|..|++.|++|+|+|+.+...... ..+.+.+. +...+...........++.++...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l-----~~gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~ 211 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL-----RYGIPEFR-LPKDIVDREVERLLKLGVEIRTNT 211 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe-----eccCCCcc-CCHHHHHHHHHHHHHcCCEEEeCC
Confidence 456899999999999999999999999999999987642110 01122211 111111211122233467766554
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
... ..+.+ ++. .+.||+||+|||+. |+.+++||.+ .++++. ..+...........
T Consensus 212 ~v~-----~~v~~----~~~--------~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~------~~~l~~~~~~~~~~ 268 (457)
T PRK11749 212 EVG-----RDITL----DEL--------RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSA------VDFLTRVNQAVADY 268 (457)
T ss_pred EEC-----CccCH----HHH--------HhhCCEEEEccCCCCCCCCCCCCccCCCcEEH------HHHHHHHhhccccc
Confidence 331 11211 111 46799999999986 8888899874 222221 12222111000001
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~ 295 (351)
.. ..+++|+|||||++|+|+|..+.+++. .+|+++++.. .++.... ..+.++
T Consensus 269 ~~--------~~g~~VvViGgG~~g~e~A~~l~~~G~-------------~~Vtlv~~~~~~~~~~~~~-----~~~~~~ 322 (457)
T PRK11749 269 DL--------PVGKRVVVIGGGNTAMDAARTAKRLGA-------------ESVTIVYRRGREEMPASEE-----EVEHAK 322 (457)
T ss_pred cC--------CCCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHH-----HHHHHH
Confidence 11 235699999999999999999988761 3899999853 3433222 245677
Q ss_pred hcCcEEEcCe-EEEEeCCe-----EEec-------------------CCcEEeccEEEEecCCCCc-cccc-cCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQK-----LILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SLDLPKSP 348 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~~-----v~~~-------------------~g~~~~~D~vi~a~G~~p~-~~~~-~~gl~~~~ 348 (351)
+.||+++++. ++++.++. |++. ++.++++|.||+|+|++|+ .++. ..++++++
T Consensus 323 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~ 402 (457)
T PRK11749 323 EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNR 402 (457)
T ss_pred HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCC
Confidence 8899999995 88886432 5542 2346999999999999999 5554 45777776
Q ss_pred CC
Q 018704 349 GG 350 (351)
Q Consensus 349 ~G 350 (351)
+|
T Consensus 403 ~g 404 (457)
T PRK11749 403 WG 404 (457)
T ss_pred CC
Confidence 65
No 60
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.92 E-value=2.6e-24 Score=204.35 Aligned_cols=241 Identities=24% Similarity=0.382 Sum_probs=191.5
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccc-hhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
..++||||-|++|..+..++.+ .-++++++-..++..|. .++.....+.-........-. . ++...++..+.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~---d-wy~~~~i~L~~ 78 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRN---D-WYEENGITLYT 78 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccch---h-hHHHcCcEEEc
Confidence 4689999999999999999977 55789999988887765 444444433222222222222 2 23344555554
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
.+|+.||++.+.+.. +.|. .+.||.||+|||+.|..+++||.+ +.++.++++++........
T Consensus 79 ~~~v~~idr~~k~V~t---~~g~--------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a----- 142 (793)
T COG1251 79 GEKVIQIDRANKVVTT---DAGR--------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA----- 142 (793)
T ss_pred CCeeEEeccCcceEEc---cCCc--------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-----
Confidence 589999999999976 4666 999999999999999999999987 6788899999988877652
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCCCcHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLRHYATTQ 293 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--l~~~~~~~~~~~~~~ 293 (351)
+..++-+|||||.-|+|+|..|.+.| .++++++-.+. -..+|+.....+++.
T Consensus 143 ------------r~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 143 ------------RNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred ------------hccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 34457899999999999999999988 88999888753 266888889999999
Q ss_pred hhhcCcEEEcCe-EEEEeC----CeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSP 348 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~----~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~ 348 (351)
+++.|++++++. ..++.+ .++.++||..+++|.||+|+|++|| ++.+..|+.+++
T Consensus 197 le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr 257 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR 257 (793)
T ss_pred HHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC
Confidence 999999999985 444432 5899999999999999999999999 899999998875
No 61
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.92 E-value=9.5e-25 Score=224.13 Aligned_cols=283 Identities=14% Similarity=0.119 Sum_probs=169.1
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|...|.+.... .++....++++..+++... .+.. +......++|+|||||||||+||.+|++.|++|+|||+
T Consensus 389 ~Ce~~C~~~~~~-~pv~I~~ler~~~d~~~~~----~~~~--~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~ 461 (1006)
T PRK12775 389 QCEAQCIIAKKH-ESVGIGRLERFVGDNARAK----PVKP--PRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEA 461 (1006)
T ss_pred CHHHhCcCCCCC-CCeeecHHHHHHHHHHHHc----CCCC--CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 455556544332 4567788888877654321 1111 11223467999999999999999999999999999998
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+..... ...+.+.+....+.+...... ....++.+....+.+. .+.+..+. . ...||+
T Consensus 462 ~~~~GG~-----l~~gip~~rl~~e~~~~~~~~-l~~~Gv~~~~~~~vg~-----~~~~~~l~--~--------~~~yDa 520 (1006)
T PRK12775 462 LHVVGGV-----LQYGIPSFRLPRDIIDREVQR-LVDIGVKIETNKVIGK-----TFTVPQLM--N--------DKGFDA 520 (1006)
T ss_pred CCCCcce-----eeccCCccCCCHHHHHHHHHH-HHHCCCEEEeCCccCC-----ccCHHHHh--h--------ccCCCE
Confidence 7654211 111333332222222223333 3345788877655432 22221110 0 346999
Q ss_pred EEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 174 LVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 174 lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
||||||+. |+.++|||.+ +++++.. .+...+... .....+..+. ....+|+|+|||||++|+|+|..+.+
T Consensus 521 ViIATGa~~pr~l~IpG~~l~gV~~a~------~fL~~~~~~-~~~~~~~~~~-~~~~Gk~VvVIGgG~tA~D~A~~a~r 592 (1006)
T PRK12775 521 VFLGVGAGAPTFLGIPGEFAGQVYSAN------EFLTRVNLM-GGDKFPFLDT-PISLGKSVVVIGAGNTAMDCLRVAKR 592 (1006)
T ss_pred EEEecCCCCCCCCCCCCcCCCCcEEHH------HHHHHHHhc-CccccccccC-CccCCCEEEEECCcHHHHHHHHHHHH
Confidence 99999995 8999999975 3333322 222221100 0000010000 01346799999999999999999998
Q ss_pred HHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEec-----
Q 018704 252 FIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILN----- 317 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~~----- 317 (351)
+|. ..|++++|.. .++....+ .+.+++.||+++++. ++++.. + +|.+.
T Consensus 593 lGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~ 654 (1006)
T PRK12775 593 LGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELG 654 (1006)
T ss_pred cCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEec
Confidence 872 4688888752 23322111 245677899999984 777642 2 23221
Q ss_pred ----CC----------cEEeccEEEEecCCCCc-ccccc-CCCCCCCCC
Q 018704 318 ----DG----------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGG 350 (351)
Q Consensus 318 ----~g----------~~~~~D~vi~a~G~~p~-~~~~~-~gl~~~~~G 350 (351)
+| .++++|.||+|+|+.|+ .++.. .|++++++|
T Consensus 655 ~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G 703 (1006)
T PRK12775 655 EPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWG 703 (1006)
T ss_pred ccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCC
Confidence 12 25899999999999999 55543 367776665
No 62
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.92 E-value=4e-24 Score=215.87 Aligned_cols=275 Identities=16% Similarity=0.164 Sum_probs=163.4
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|+..+.+... -.++....+.+++.+++..... ..+ ..+......++|+|||||||||+||++|++.|++|+|||+
T Consensus 493 ~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~-~~~--~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek 568 (1012)
T TIGR03315 493 QCQYKCTRLDY-DESVNIREMKKVAAEKGYDEYK-TRW--HKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEK 568 (1012)
T ss_pred chHHHhcCCCC-CCCCcccHHHHHHHhhHHHhcC-ccC--CCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 44555544322 2345567777777665321100 011 1111223568999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+...... ..+.+.+......+.+....+. ..++.++.+.. ..+.+ .+.. ...||+
T Consensus 569 ~~~lGG~l-----~~~IP~~rlp~e~l~~~ie~l~-~~GVe~~~g~~-------~d~~v---e~l~--------~~gYDa 624 (1012)
T TIGR03315 569 KEKPGGVV-----KNIIPEFRISAESIQKDIELVK-FHGVEFKYGCS-------PDLTV---AELK--------NQGYKY 624 (1012)
T ss_pred ccccCcee-----eecccccCCCHHHHHHHHHHHH-hcCcEEEEecc-------cceEh---hhhh--------cccccE
Confidence 87642211 0012222111112222222222 34666655421 11222 1111 567999
Q ss_pred EEEecCCC-cCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH
Q 018704 174 LVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 174 lviAtG~~-p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~ 252 (351)
||||||+. ++.+.++|..+.++. .++ +...+.. .. .....+++|+|||||++|+|+|..+.+.
T Consensus 625 VIIATGA~~~~~l~I~G~~~~v~~--ave----fL~~~~~----~~------~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl 688 (1012)
T TIGR03315 625 VILAIGAWKHGPLRLEGGGERVLK--SLE----FLRAFKE----GP------TINPLGKHVVVVGGGNTAMDAARAALRV 688 (1012)
T ss_pred EEECCCCCCCCCCCcCCCCcceee--HHH----HHHHhhc----cc------cccccCCeEEEECCCHHHHHHHHHHHHh
Confidence 99999997 555678875433321 122 2221110 00 0013457999999999999999988765
Q ss_pred -HHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEe------------
Q 018704 253 -IMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLIL------------ 316 (351)
Q Consensus 253 -~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~------------ 316 (351)
|. .+|++++|+. .++..+.++. + +.+.||+++.+. +.+++++++.+
T Consensus 689 ~Ga-------------~kVtLVyRr~~~~Mpa~~eEl~----~-aleeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sG 750 (1012)
T TIGR03315 689 PGV-------------EKVTVVYRRTKRYMPASREELE----E-ALEDGVDFKELLSPESFEDGTLTCEVMKLGEPDASG 750 (1012)
T ss_pred CCC-------------ceEEEEEccCccccccCHHHHH----H-HHHcCCEEEeCCceEEEECCeEEEEEEEeecccCCC
Confidence 31 4799999863 4555544432 2 235699999884 66666443322
Q ss_pred -----cCCc--EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 317 -----NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 317 -----~~g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+|+ ++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 751 r~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G 792 (1012)
T TIGR03315 751 RRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYG 792 (1012)
T ss_pred ceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCC
Confidence 1233 5899999999999999 88888898887766
No 63
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.92 E-value=1.6e-24 Score=218.84 Aligned_cols=241 Identities=20% Similarity=0.234 Sum_probs=149.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+|||||||||+||.+|++.|++|+|||+.+.+... ...+.+.+. +...+.+.........++.+....
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~-----l~~gip~~r-lp~~~~~~~~~~l~~~gv~~~~~~ 502 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV-----LKYGIPEFR-LPKKIVDVEIENLKKLGVKFETDV 502 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe-----eeecCCCCC-CCHHHHHHHHHHHHHCCCEEECCC
Confidence 45689999999999999999999999999999986543211 111233322 112222222222334477776554
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+. .+.+.+ ++.. ...||+||||||+ .|+.+++||.+ +++++..++.....+.... ....
T Consensus 503 ~v-----~~~v~~---~~l~--------~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~---~~~~ 563 (752)
T PRK12778 503 IV-----GKTITI---EELE--------EEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAA---SPDS 563 (752)
T ss_pred EE-----CCcCCH---HHHh--------hcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccc---cccc
Confidence 33 122222 1112 5679999999999 49999999975 3344333222211111100 0000
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC--CCCCCcHHHHHHHHHHh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE--ILSSFDDRLRHYATTQL 294 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~l~~~~~~~~~~~~~~l 294 (351)
..| ...+++|+|||||++|+|+|..+.++| .+ |+++++.. .++....++ +.+
T Consensus 564 ~~~------~~~gk~VvVIGgG~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~ 618 (752)
T PRK12778 564 DTP------IKFGKKVAVVGGGNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHA 618 (752)
T ss_pred cCc------ccCCCcEEEECCcHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHH
Confidence 111 134579999999999999999999887 54 99999863 334322221 346
Q ss_pred hhcCcEEEcCe-EEEEeC---C---eEEec---------CC-----------cEEeccEEEEecCCCCc-cccccC-CCC
Q 018704 295 SKSGVRLVRGI-VKDVDS---Q---KLILN---------DG-----------TEVPYGLLVWSTGVGPS-TLVKSL-DLP 345 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~---~---~v~~~---------~g-----------~~~~~D~vi~a~G~~p~-~~~~~~-gl~ 345 (351)
++.||+++++. ++++.. + +|.+. +| .+++||.||+|+|+.|+ .++..+ |++
T Consensus 619 ~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~ 698 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLE 698 (752)
T ss_pred HHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCce
Confidence 77899999884 766642 1 23331 22 25899999999999999 555554 777
Q ss_pred CCCCC
Q 018704 346 KSPGG 350 (351)
Q Consensus 346 ~~~~G 350 (351)
++++|
T Consensus 699 ~~~~G 703 (752)
T PRK12778 699 LNRKG 703 (752)
T ss_pred ECCCC
Confidence 77665
No 64
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.92 E-value=4.8e-24 Score=204.58 Aligned_cols=289 Identities=19% Similarity=0.222 Sum_probs=169.3
Q ss_pred ccCcccccccCCCCCCCCCcceeccccccccCCCCCccccccc-cCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCce
Q 018704 9 RNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQY-SGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87 (351)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~ 87 (351)
++....|...|.... .-..+.+..++++..++.... .+ .+. .+.....++|+|||||||||++|..|++.|++
T Consensus 95 ~vC~~~Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~----~~~~~~-~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~ 168 (471)
T PRK12810 95 RVCPAPCEGACTLNI-NFGPVTIKNIERYIIDKAFEE----GWVKPD-PPVKRTGKKVAVVGSGPAGLAAADQLARAGHK 168 (471)
T ss_pred CcCCchhHHhccCCC-CCCCccHHHHHHHHHHHHHHc----CCCCCC-CCcCCCCCEEEEECcCHHHHHHHHHHHhCCCc
Confidence 334444666665543 224556777777777643321 11 111 12224567999999999999999999999999
Q ss_pred EEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCcee
Q 018704 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKF 167 (351)
Q Consensus 88 v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~ 167 (351)
|+|||+.+..... ...+.+.+......+..... .....++.++.......+... +..
T Consensus 169 V~vie~~~~~GG~-----l~~gip~~~~~~~~~~~~~~-~~~~~gv~~~~~~~v~~~~~~---------~~~-------- 225 (471)
T PRK12810 169 VTVFERADRIGGL-----LRYGIPDFKLEKEVIDRRIE-LMEAEGIEFRTNVEVGKDITA---------EEL-------- 225 (471)
T ss_pred EEEEecCCCCCce-----eeecCCcccCCHHHHHHHHH-HHHhCCcEEEeCCEECCcCCH---------HHH--------
Confidence 9999998764211 01122222111111222222 233346776655443322110 111
Q ss_pred EeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC-CCCCCHhhhcccCeEEEECCChHHHH
Q 018704 168 KISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD-VPGISEEEKSRLLHCVVVGGGPTGVE 244 (351)
Q Consensus 168 ~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~v~VvGgG~~a~e 244 (351)
...||+||+|||+. |+.+.+||.+ .++++.. .+.....+...... .+. ....+++|+|||||++|+|
T Consensus 226 ~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~------~~l~~~~~~~~~~~~~~~----~~~~gk~VvVIGgG~~g~e 295 (471)
T PRK12810 226 LAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAM------DFLIQNTRRVLGDETEPF----ISAKGKHVVVIGGGDTGMD 295 (471)
T ss_pred HhhCCEEEEecCCCCCCcCCCCCccCCCcEEHH------HHHHHHHhhhcccccccc----ccCCCCEEEEECCcHHHHH
Confidence 45799999999997 8888999975 2333211 11111100000000 000 0134579999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcH-------H-HHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce
Q 018704 245 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD-------R-LRHYATTQLSKSGVRLVRGI-VKDVDS--QK 313 (351)
Q Consensus 245 ~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~-------~-~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~ 313 (351)
+|..+.+.+. .+|+++...... ..+. . ......+.+++.||+++++. ++++.. +.
T Consensus 296 ~A~~~~~~ga-------------~~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~ 361 (471)
T PRK12810 296 CVGTAIRQGA-------------KSVTQRDIMPMP-PSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGK 361 (471)
T ss_pred HHHHHHHcCC-------------CeEEEccccCCC-ccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCE
Confidence 9998887762 478866554321 1111 0 01113456778899999995 888863 22
Q ss_pred E---E-----ecCC---------cEEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 314 L---I-----LNDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 314 v---~-----~~~g---------~~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
+ . +.+| .++++|.||+|+|+.|+ .|++.+|++++++|
T Consensus 362 v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g 417 (471)
T PRK12810 362 VTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERG 417 (471)
T ss_pred EEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCC
Confidence 2 2 2232 46999999999999998 48888888888766
No 65
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.91 E-value=9.7e-24 Score=185.94 Aligned_cols=245 Identities=21% Similarity=0.251 Sum_probs=162.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----------h-----hhhhhc------ccccccccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----------L-----LASTCV------GTLEFRSVAEP 119 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----------~-----~~~~~~------~~~~~~~~~~~ 119 (351)
..+||+|||+||+|..||++.++.|++.+++|++..+..+- + +..... ...........
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 35999999999999999999999999999999865532210 0 000000 00111111111
Q ss_pred hhccc--------------hhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCC
Q 018704 120 IARIQ--------------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-AST 184 (351)
Q Consensus 120 ~~~~~--------------~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~ 184 (351)
++..+ ..+.....+.++.+.-.- .+.+.+.+.. .++. .+.+.++++|||||+. +.+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf--~~p~~V~v~k-~dg~------~~ii~aKnIiiATGSeV~~~ 188 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSF--LDPNKVSVKK-IDGE------DQIIKAKNIIIATGSEVTPF 188 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEee--cCCceEEEec-cCCC------ceEEeeeeEEEEeCCccCCC
Confidence 11111 111112223333332222 2445555543 2333 3489999999999995 444
Q ss_pred CCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 185 p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
|+|.--++.+.++... +.+..+|. +++|||+|.+|+|+..-..++|
T Consensus 189 PGI~IDekkIVSStgA-------------LsL~~vPk----------~~~viG~G~IGLE~gsV~~rLG----------- 234 (506)
T KOG1335|consen 189 PGITIDEKKIVSSTGA-------------LSLKEVPK----------KLTVIGAGYIGLEMGSVWSRLG----------- 234 (506)
T ss_pred CCeEecCceEEecCCc-------------cchhhCcc----------eEEEEcCceeeeehhhHHHhcC-----------
Confidence 4332211334443332 34555664 9999999999999999999998
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEec---CC--cEEeccEEEEecC
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILN---DG--TEVPYGLLVWSTG 332 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~---~g--~~~~~D~vi~a~G 332 (351)
.+||+++.. ++.+.+|.++++.+++.|+..|+++++++ |...+. + .+++. ++ .+++||++++++|
T Consensus 235 ---seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 235 ---SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred ---CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 999999986 57788999999999999999999999995 888764 3 23332 23 3589999999999
Q ss_pred CCCc-c--ccccCCCCCCCCCC
Q 018704 333 VGPS-T--LVKSLDLPKSPGGR 351 (351)
Q Consensus 333 ~~p~-~--~~~~~gl~~~~~G~ 351 (351)
++|- + =++++|++.|++||
T Consensus 312 RrP~t~GLgle~iGi~~D~r~r 333 (506)
T KOG1335|consen 312 RRPFTEGLGLEKIGIELDKRGR 333 (506)
T ss_pred CcccccCCChhhcccccccccc
Confidence 9998 2 34566888888886
No 66
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.91 E-value=6.4e-24 Score=210.51 Aligned_cols=233 Identities=18% Similarity=0.241 Sum_probs=146.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+||||||+||++|..|++.|++|+|||+.+...... ..+.+.+. +...+.+.........++.+....
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l-----~~gip~~~-~~~~~~~~~~~~l~~~Gv~i~~~~ 264 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM-----RYGIPRFR-LPESVIDADIAPLRAMGAEFRFNT 264 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee-----eecCCCCC-CCHHHHHHHHHHHHHcCCEEEeCC
Confidence 355799999999999999999999999999999987642111 01122221 111111111112233466665544
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc-CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p-~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+.+++ +.+ .+. ...||+||+|||+.+ +.+++||.+ ++++. ...+..... ..
T Consensus 265 ~v~~d-----v~~---~~~---------~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~------~~~~l~~~~----~~ 317 (652)
T PRK12814 265 VFGRD-----ITL---EEL---------QKEFDAVLLAVGAQKASKMGIPGEELPGVIS------GIDFLRNVA----LG 317 (652)
T ss_pred cccCc-----cCH---HHH---------HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEe------HHHHHHHhh----cC
Confidence 33222 111 111 335999999999984 577899864 22222 111111110 00
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~ 295 (351)
. ....+++|+|||||++|+|+|..+.+++. .+|+++++.. .++..+.++. + +.
T Consensus 318 ~-------~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei~----~-a~ 372 (652)
T PRK12814 318 T-------ALHPGKKVVVIGGGNTAIDAARTALRLGA-------------ESVTILYRRTREEMPANRAEIE----E-AL 372 (652)
T ss_pred C-------cccCCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH----H-HH
Confidence 0 01345799999999999999999988762 4799999863 4555444332 2 23
Q ss_pred hcCcEEEcCe-EEEEeC--CeE-----Eec---------------CCc--EEeccEEEEecCCCCc-cccccCCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDS--QKL-----ILN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPG 349 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~~v-----~~~---------------~g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~ 349 (351)
+.||+++++. ++++.. +++ .+. +|+ ++++|.||+|+|+.|+ .+++..|++++++
T Consensus 373 ~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~ 452 (652)
T PRK12814 373 AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRN 452 (652)
T ss_pred HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCC
Confidence 5699999984 777653 222 111 122 5899999999999999 7888888888776
Q ss_pred C
Q 018704 350 G 350 (351)
Q Consensus 350 G 350 (351)
|
T Consensus 453 G 453 (652)
T PRK12814 453 G 453 (652)
T ss_pred C
Confidence 6
No 67
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=7.6e-23 Score=211.18 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=158.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (351)
..+||+|||||||||+||.+|++.|++|+|||+++.......... .................++....++.++. .+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~ 238 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---ETIDGKPAADWAAATVAELTAMPEVTLLPRTT 238 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---cccCCccHHHHHHHHHHHHhcCCCcEEEcCCE
Confidence 357999999999999999999999999999999876432111110 01111111112233333444444566554 57
Q ss_pred eeeEeCCCCEEEEEeecCc-----cccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHh
Q 018704 140 CAGIDTDNHVVHCETVTDE-----LRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
|.+++.......+...... .....+....+.|++||||||+.++.|++||.+ +.++....... +....
T Consensus 239 V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~---~l~~~--- 312 (985)
T TIGR01372 239 AFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAART---YLNRY--- 312 (985)
T ss_pred EEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHH---HHHhh---
Confidence 7777654332222211100 000011123689999999999999999999975 34444322222 11110
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~ 293 (351)
.. ..+++|+|||+|++|+++|..|.+.+. ..|+++++.+. +...+.+.
T Consensus 313 ---~~---------~~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~-------~~~~l~~~ 360 (985)
T TIGR01372 313 ---GV---------APGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARAD-------VSPEARAE 360 (985)
T ss_pred ---Cc---------CCCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcc-------hhHHHHHH
Confidence 00 234699999999999999999998761 34778876532 23345677
Q ss_pred hhhcCcEEEcCe-EEEEeCC----eEEec----CCcEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~----~v~~~----~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
+++.||+++.+. |+++.++ +|++. ++++++||.|++++|++|+ +++..+|+++
T Consensus 361 L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~ 423 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKL 423 (985)
T ss_pred HHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCe
Confidence 889999999995 8888764 45554 4567999999999999999 8888877654
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.91 E-value=2.1e-23 Score=207.63 Aligned_cols=273 Identities=15% Similarity=0.197 Sum_probs=160.9
Q ss_pred CcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhh
Q 018704 27 SNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST 106 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~ 106 (351)
..+....++++..+.+.... +...........++|+|||||||||++|..|++.|++|+|||+.+.+... +
T Consensus 296 ~~v~I~~l~r~~~d~~~~~~----~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~--l--- 366 (654)
T PRK12769 296 GAVTIGNIERYISDQALAKG----WRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL--L--- 366 (654)
T ss_pred CCeecCHHHHHHHHHHHHhC----CCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce--e---
Confidence 35667777777766443211 11111111235689999999999999999999999999999987664211 0
Q ss_pred hcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCC
Q 018704 107 CVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTF 185 (351)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p 185 (351)
..+.+.+. +...+...........++.+......+.+ +.++ .. ...||+||+|||+. ++.+
T Consensus 367 ~~gip~~~-l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~----~~--------~~~~DavilAtGa~~~~~l 428 (654)
T PRK12769 367 TFGIPAFK-LDKSLLARRREIFSAMGIEFELNCEVGKD-----ISLE----SL--------LEDYDAVFVGVGTYRSMKA 428 (654)
T ss_pred eecCCCcc-CCHHHHHHHHHHHHHCCeEEECCCEeCCc-----CCHH----HH--------HhcCCEEEEeCCCCCCCCC
Confidence 01222221 22222222222233446666544322111 1110 11 34699999999986 5567
Q ss_pred CCCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 GIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
.+||.+. +++.. ..........+ ..+..... .......+++|+|||||++|+|+|..+.+++.
T Consensus 429 ~i~g~~~~Gv~~a--~~~l~~~~~~~---~~~~~~~~-~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga---------- 492 (654)
T PRK12769 429 GLPNEDAPGVYDA--LPFLIANTKQV---MGLEELPE-EPFINTAGLNVVVLGGGDTAMDCVRTALRHGA---------- 492 (654)
T ss_pred CCCCCCCCCeEEh--HHHHHHHHhhh---ccCccccc-cccccCCCCeEEEECCcHHHHHHHHHHHHcCC----------
Confidence 8888752 22221 11111100010 01110000 00001345799999999999999999888762
Q ss_pred CCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEe---------cCCc------
Q 018704 265 KDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLIL---------NDGT------ 320 (351)
Q Consensus 265 ~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~---------~~g~------ 320 (351)
.+|+++++.. .++..+.+ .+.+++.||+++++. ++++.. + +|++ .+|+
T Consensus 493 ---~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~ 564 (654)
T PRK12769 493 ---SNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPI 564 (654)
T ss_pred ---CeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeC
Confidence 4799999863 24443332 345778899999984 777742 2 2333 1232
Q ss_pred -----EEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 321 -----EVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 321 -----~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 565 ~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G 601 (654)
T PRK12769 565 PGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWG 601 (654)
T ss_pred CCceEEEECCEEEECccCCCCccccccccCCcCCCCC
Confidence 5999999999999998 47888889888776
No 69
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.91 E-value=2.7e-23 Score=192.51 Aligned_cols=251 Identities=22% Similarity=0.215 Sum_probs=148.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
..++|+|||||++|+++|..|++.|++|++||+.+....... .+..........+......+... ++.++.. .
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~-----~~~~~~~~~~~~~~~~~~~l~~~-~i~~~~~~~ 90 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML-----FGIPEFRIPIERVREGVKELEEA-GVVFHTRTK 90 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee-----ecCcccccCHHHHHHHHHHHHhC-CeEEecCcE
Confidence 457999999999999999999999999999999876431110 01111110111122222333333 6666554 3
Q ss_pred eeeEeC----CCCEEEEEeec-CccccCCCceeEeeccEEEEecCC-CcCCCCCCCccc-cccccCCHHHHHHHHHHHHH
Q 018704 140 CAGIDT----DNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKE-NATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 140 v~~i~~----~~~~v~~~~~~-~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~ 212 (351)
+..++. ....+...... ++. .+.||+||||||+ .|+.|++||.+. .++.. ......+......
T Consensus 91 v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~--~~~~~~~~~~~~~ 160 (352)
T PRK12770 91 VCCGEPLHEEEGDEFVERIVSLEEL--------VKKYDAVLIATGTWKSRKLGIPGEDLPGVYSA--LEYLFRIRAAKLG 160 (352)
T ss_pred EeeccccccccccccccccCCHHHH--------HhhCCEEEEEeCCCCCCcCCCCCccccCceeH--HHHHHHhhhcccc
Confidence 333322 11111111000 111 4789999999999 488899998752 23221 1111111110000
Q ss_pred hhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCCCCCcHHHHHHHH
Q 018704 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYAT 291 (351)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~~~~~~~~~~ 291 (351)
.+.....| ...+++++|||+|++|+|+|..|...+ .+ |+++++...... .......
T Consensus 161 ~~~~~~~~------~~~g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~ 217 (352)
T PRK12770 161 YLPWEKVP------PVEGKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEI 217 (352)
T ss_pred cccccccc------ccCCCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHH
Confidence 00011111 123569999999999999999998765 54 999988642211 1113344
Q ss_pred HHhhhcCcEEEcCe-EEEEeCC----eEEec--------------------CCcEEeccEEEEecCCCCc-ccccc-CCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDSQ----KLILN--------------------DGTEVPYGLLVWSTGVGPS-TLVKS-LDL 344 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~~----~v~~~--------------------~g~~~~~D~vi~a~G~~p~-~~~~~-~gl 344 (351)
+.|+++||+++++. +++++++ .+.+. ++.++++|.||+++|++|+ .+..+ +|+
T Consensus 218 ~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~ 297 (352)
T PRK12770 218 ERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI 297 (352)
T ss_pred HHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc
Confidence 56889999999994 8888642 22221 2346999999999999999 56555 677
Q ss_pred CCCCCC
Q 018704 345 PKSPGG 350 (351)
Q Consensus 345 ~~~~~G 350 (351)
+++++|
T Consensus 298 ~~~~~g 303 (352)
T PRK12770 298 ELNRKG 303 (352)
T ss_pred eecCCC
Confidence 766554
No 70
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.90 E-value=8.6e-23 Score=195.35 Aligned_cols=285 Identities=16% Similarity=0.177 Sum_probs=166.5
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|++.|..... -.++....++++..++.... .+...........++|+||||||+||++|..|++.|++|+|+|+
T Consensus 98 ~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~~----~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~ 172 (467)
T TIGR01318 98 LCEGACTLNDE-FGAVTIGNLERYITDTALAM----GWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDR 172 (467)
T ss_pred ChHHhCcCCCC-CCCccHHHHHHHHHHHHHHh----CCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 45556655432 23455677777776644321 11111111223568999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+..... + ..+.+.+. +...+...........++.++...... ..+.+ ++. ...||+
T Consensus 173 ~~~~gG~--l---~~gip~~~-~~~~~~~~~~~~~~~~Gv~~~~~~~v~-----~~~~~----~~~--------~~~~D~ 229 (467)
T TIGR01318 173 HPEIGGL--L---TFGIPSFK-LDKAVLSRRREIFTAMGIEFHLNCEVG-----RDISL----DDL--------LEDYDA 229 (467)
T ss_pred CCCCCce--e---eecCcccc-CCHHHHHHHHHHHHHCCCEEECCCEeC-----CccCH----HHH--------HhcCCE
Confidence 8764211 0 01222221 112222222223334466665432111 11111 111 357999
Q ss_pred EEEecCCCc-CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 174 LVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 174 lviAtG~~p-~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
||+|||+.+ +.+++||.+ +++++. .++........ +.....+.. ......+++++|||+|++|+|+|..+.+
T Consensus 230 vilAtGa~~~~~~~i~g~~~~gV~~a---~~~l~~~~~~~--~~~~~~~~~-~~~~~~gk~VvVIGgG~~a~d~A~~a~~ 303 (467)
T TIGR01318 230 VFLGVGTYRSMRGGLPGEDAPGVLQA---LPFLIANTRQL--MGLPESPEE-PLIDVEGKRVVVLGGGDTAMDCVRTAIR 303 (467)
T ss_pred EEEEeCCCCCCcCCCCCcCCCCcEEH---HHHHHHHHHHh--cCCCccccc-cccccCCCEEEEECCcHHHHHHHHHHHH
Confidence 999999986 456899875 233321 11111101100 001100000 0011245799999999999999999888
Q ss_pred HHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---Ce---EEec-----
Q 018704 252 FIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QK---LILN----- 317 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~~---v~~~----- 317 (351)
++. .+|++++|.. .++..+.++ +.+++.||+++++. ++++.. +. |++.
T Consensus 304 ~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 365 (467)
T TIGR01318 304 LGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG 365 (467)
T ss_pred cCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence 762 4799999863 345444332 34567899999995 878753 12 2321
Q ss_pred ----CC-----------cEEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 318 ----DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 318 ----~g-----------~~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
+| .++++|.||+|+|+.|+ .+++.++++++++|
T Consensus 366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g 415 (467)
T TIGR01318 366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWG 415 (467)
T ss_pred ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCC
Confidence 12 36899999999999998 57777788887766
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.89 E-value=1.3e-22 Score=201.01 Aligned_cols=272 Identities=16% Similarity=0.170 Sum_probs=162.7
Q ss_pred CcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhh
Q 018704 27 SNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST 106 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~ 106 (351)
..+....++++..+++... .+...........++|+||||||+||++|..|++.|++|+|+|+.+..... .
T Consensus 279 ~~v~i~~l~r~~~d~~~~~----~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~-----l 349 (639)
T PRK12809 279 GAVSIGNLERYITDTALAM----GWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-----L 349 (639)
T ss_pred CCcChhHHHHHHHHHHHHh----CCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe-----e
Confidence 3456677777777654321 121211112234689999999999999999999999999999998764211 1
Q ss_pred hcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCC
Q 018704 107 CVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTF 185 (351)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p 185 (351)
..+.+.+. +...+.+.........++.++.....+. .+.+ . .. ...||+||+|||+. ++.+
T Consensus 350 ~~gip~~~-l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~---~-~l--------~~~~DaV~latGa~~~~~~ 411 (639)
T PRK12809 350 TFGIPPFK-LDKTVLSQRREIFTAMGIDFHLNCEIGR-----DITF---S-DL--------TSEYDAVFIGVGTYGMMRA 411 (639)
T ss_pred eccCCccc-CCHHHHHHHHHHHHHCCeEEEcCCccCC-----cCCH---H-HH--------HhcCCEEEEeCCCCCCCCC
Confidence 11233322 2222222222333445777655432211 1111 1 11 45799999999997 5567
Q ss_pred CCCCccc-cccccCCHHHHHHHHHHHHHhh-hccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 018704 186 GIHGVKE-NATFLREVHHAQEIRRKLLLNL-MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (351)
Q Consensus 186 ~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~ 263 (351)
++||.+. .++. +..+.....+.. ..... .........+|+|+|||+|++|+|+|..+.++|.
T Consensus 412 ~i~g~~~~gv~~------a~~~l~~~~~~~~~~~~~-~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga--------- 475 (639)
T PRK12809 412 DLPHEDAPGVIQ------ALPFLTAHTRQLMGLPES-EEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA--------- 475 (639)
T ss_pred CCCCCccCCcEe------HHHHHHHHHHhhccCccc-cccccccCCCCeEEEECCcHHHHHHHHHHHHcCC---------
Confidence 8888752 2222 111111110000 01000 0000112346799999999999999998887762
Q ss_pred CCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---CeE---Ee---c------CC------
Q 018704 264 VKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QKL---IL---N------DG------ 319 (351)
Q Consensus 264 ~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~~v---~~---~------~g------ 319 (351)
.+|++++|+. .++..+.++ ..+++.||+++++. ++++.. +.| .+ . +|
T Consensus 476 ----~~Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~ 546 (639)
T PRK12809 476 ----ASVTCAYRRDEVSMPGSRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRP 546 (639)
T ss_pred ----CeEEEeeecCcccCCCCHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCcccee
Confidence 4799999863 244443333 23567899999995 777752 222 22 1 22
Q ss_pred -----cEEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 320 -----TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 320 -----~~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
.++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 547 ~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G 584 (639)
T PRK12809 547 VAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWG 584 (639)
T ss_pred cCCceEEEECCEEEECcCCCCCccccccccCcccCCCC
Confidence 25899999999999997 57788888888766
No 72
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.88 E-value=1.5e-21 Score=187.55 Aligned_cols=247 Identities=21% Similarity=0.229 Sum_probs=141.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
..++|+|||||++||++|..|++.|++|+|||+.+..... + ..+.+.+. +...+...........++.++....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~--l---~~gip~~~-~~~~~~~~~~~~~~~~Gv~~~~~~~ 215 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGL--L---MYGIPNMK-LDKAIVDRRIDLLSAEGIDFVTNTE 215 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCce--e---eccCCCcc-CCHHHHHHHHHHHHhCCCEEECCCE
Confidence 4579999999999999999999999999999988764211 0 01122211 1111211111223334777665543
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
...+... +.. ...||+||+|||+. |+.+++||.+ +.++.. ..+.....+......
T Consensus 216 v~~~~~~---------~~~--------~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~------~~~l~~~~~~~~~~~ 272 (485)
T TIGR01317 216 IGVDISA---------DEL--------KEQFDAVVLAGGATKPRDLPIPGRELKGIHYA------MEFLPSATKALLGKD 272 (485)
T ss_pred eCCccCH---------HHH--------HhhCCEEEEccCCCCCCcCCCCCcCCCCcEeH------HHHHHHHhhhhcccc
Confidence 3221110 111 46799999999998 8999999975 233321 111111100000000
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC-C---------CCCcHH--H
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-L---------SSFDDR--L 286 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-l---------~~~~~~--~ 286 (351)
. .........+|+|+|||||++|+|+|..+.+++. .+|+++++.+. + +.++.. .
T Consensus 273 ~-~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga-------------~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~ 338 (485)
T TIGR01317 273 F-KDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA-------------ASVHQFEIMPKPPEARAKDNPWPEWPRVYRV 338 (485)
T ss_pred c-cccccccCCCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEEecCCChhhcccccCCCccchhhhh
Confidence 0 0000011345799999999999999988887662 57999987531 1 111111 1
Q ss_pred HHHHHHHhhhcCcEE-EcC-eEEEEeC---C---eEE-----e---cCCc-----------EEeccEEEEecCCC-Cc-c
Q 018704 287 RHYATTQLSKSGVRL-VRG-IVKDVDS---Q---KLI-----L---NDGT-----------EVPYGLLVWSTGVG-PS-T 337 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~-~~~-~v~~v~~---~---~v~-----~---~~g~-----------~~~~D~vi~a~G~~-p~-~ 337 (351)
....++.++..||.+ +++ .++++.. + ++. + ++|+ ++++|.||+|+|+. |+ .
T Consensus 339 ~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~ 418 (485)
T TIGR01317 339 DYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQI 418 (485)
T ss_pred HHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccc
Confidence 122333344456543 333 2555432 1 122 1 1332 69999999999996 77 7
Q ss_pred ccccCCCCCCCCC
Q 018704 338 LVKSLDLPKSPGG 350 (351)
Q Consensus 338 ~~~~~gl~~~~~G 350 (351)
+++.+|++++++|
T Consensus 419 ~~~~~gl~~~~~G 431 (485)
T TIGR01317 419 LLDDFGVKKTRRG 431 (485)
T ss_pred cccccCcccCCCC
Confidence 8888899887766
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.88 E-value=1.9e-21 Score=184.52 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=94.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccchhhhhhhccc-ccccccccchhccchhhhcCCCeEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGT-LEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
..++|+|||||||||+||..|++ .|++|+|||+.+..... + ..+. +++. ....+......+....++.++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl--v---r~gvaP~~~-~~k~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL--V---RSGVAPDHP-ETKNVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce--E---eeccCCCcc-hhHHHHHHHHHHHHHCCeEEEc
Confidence 45789999999999999999986 79999999998764211 1 1111 2222 1122222222334445676665
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc-CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p-~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
....+ +.+.+. +- ...||+||+|||+.+ +.++|||.+ ++++... .+..++....+
T Consensus 99 nv~vg-----~dvtl~---~L---------~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~------~fl~~~ng~~d 155 (491)
T PLN02852 99 NVTLG-----RDVSLS---EL---------RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAR------EFVWWYNGHPD 155 (491)
T ss_pred CEEEC-----ccccHH---HH---------hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHH------HHHHHhhcchh
Confidence 32222 222221 11 447999999999985 788999975 3334322 22222211000
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~ 252 (351)
..... .....+++|+|||+|++|+|+|..|.+.
T Consensus 156 ~~~~~----~~~~~gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 156 CVHLP----PDLKSSDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred hhhhh----hcccCCCEEEEECCCHHHHHHHHHHHhC
Confidence 00000 0012457999999999999999999874
No 74
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.87 E-value=6e-21 Score=189.86 Aligned_cols=168 Identities=15% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc--------------ccchhhhhhh---c-cccccc---ccc
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM--------------VFTPLLASTC---V-GTLEFR---SVA 117 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~--------------~~~~~~~~~~---~-~~~~~~---~~~ 117 (351)
....++|+|||||||||+||++|++.|++|+++|+.+.. .|.+++.... . |...+. .+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~ 459 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWD 459 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccch
Confidence 346789999999999999999999999999999985421 1111111111 1 111111 111
Q ss_pred cchhccch-hhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCCCCCCccc-cc
Q 018704 118 EPIARIQP-AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKE-NA 194 (351)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~-~~ 194 (351)
....+... .+....++.++.+...+.+.+...+ ....||+||||||+ .|+.+++||.+. ++
T Consensus 460 k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl----------------~~~gyDAV~IATGA~kpr~L~IPGeda~GV 523 (1028)
T PRK06567 460 KNNLDILRLILERNNNFKYYDGVALDFNITKEQA----------------FDLGFDHIAFCIGAGQPKVLDIENFEAKGV 523 (1028)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEECccCCHHHH----------------hhcCCCEEEEeCCCCCCCCCCCCCccCCCe
Confidence 11111111 1122234555444333222221111 14679999999999 599999999752 23
Q ss_pred cccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 195 TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
+. ..++....+... .+..... .....+++|+|||||++|+|+|.....
T Consensus 524 ~s---A~DfL~~l~~~~-~~~~~~~-----~~~~~Gk~VVVIGGGnTAmD~ArtAlr 571 (1028)
T PRK06567 524 KT---ASDFLMTLQSGG-AFLKNSN-----TNMVIRMPIAVIGGGLTSLDAATESLY 571 (1028)
T ss_pred EE---HHHHHHHHhhcc-ccccccc-----CcccCCCCEEEEcCcHHHHHHHHHHHh
Confidence 32 222211111100 0000000 001234689999999999999995543
No 75
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=3e-21 Score=180.54 Aligned_cols=234 Identities=15% Similarity=0.160 Sum_probs=150.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh--------h-----------hhcccccc---cc---
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA--------S-----------TCVGTLEF---RS--- 115 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~--------~-----------~~~~~~~~---~~--- 115 (351)
+.++|+|||||+|||++|+.|.+.|++++|+|+.+.....+... . .+.+.+++ ..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 45899999999999999999999999999999887663321111 1 11111111 00
Q ss_pred ---cccchhccchhhhcCCCe---EEEEEEeeeEeCCC-CEEEEEeecCccccCCCceeEeeccEEEEecCCC--cCCCC
Q 018704 116 ---VAEPIARIQPAISREPGS---YFFLSHCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTFG 186 (351)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~--p~~p~ 186 (351)
-...+.++...++...++ ..++.+|..++... ..|.+...+.+.. ....-||.|++|||.. |+.|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-----~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-----IEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-----eeEEEeeEEEEcccCcCCCCCCc
Confidence 011233333444444443 34566778888777 5777765444320 2378899999999976 89998
Q ss_pred CCCc--c---ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 018704 187 IHGV--K---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (351)
Q Consensus 187 i~g~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~ 261 (351)
++|. + ...+++.++..... -..|+|+|||+|+||+|++.+++..+
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~----------------------f~~k~VlVIG~g~SG~DIs~d~~~~a-------- 209 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEK----------------------FRDKVVLVVGCGNSGMDISLDLLRVA-------- 209 (448)
T ss_pred CCCCchhhcCCcceehhhccCccc----------------------ccCceEEEECCCccHHHHHHHHHHhc--------
Confidence 8883 2 23455555543333 33469999999999999999988766
Q ss_pred cCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEe-cCCcEEeccEEEEecCCCCc-ccc
Q 018704 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS-TLV 339 (351)
Q Consensus 262 ~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~-~~g~~~~~D~vi~a~G~~p~-~~~ 339 (351)
.+|++..+..... ... ......++..+.. |+.+++++..+ +++....+|.+|+|||+.-. +|+
T Consensus 210 ------k~v~~~~~~~~~~---~~~-----~~~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl 274 (448)
T KOG1399|consen 210 ------KEVHLSVVSPKVH---VEP-----PEILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFL 274 (448)
T ss_pred ------cCcceeeeccccc---ccc-----cceeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeeccee
Confidence 5666654310000 000 0001123444444 77788887555 55666789999999999988 888
Q ss_pred ccCCC
Q 018704 340 KSLDL 344 (351)
Q Consensus 340 ~~~gl 344 (351)
+..++
T Consensus 275 ~~~~~ 279 (448)
T KOG1399|consen 275 ETLGL 279 (448)
T ss_pred ccCCc
Confidence 87653
No 76
>PRK13984 putative oxidoreductase; Provisional
Probab=99.86 E-value=9.1e-21 Score=187.58 Aligned_cols=233 Identities=18% Similarity=0.215 Sum_probs=134.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+|||+|++|+++|..|++.|++|+|+|+.+....... .+.+.+......+..... .....++.++...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~-----~~i~~~~~~~~~~~~~~~-~~~~~gv~~~~~~ 354 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR-----YGIPSYRLPDEALDKDIA-FIEALGVKIHLNT 354 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe-----ecCCcccCCHHHHHHHHH-HHHHCCcEEECCC
Confidence 4567999999999999999999999999999998775421110 111111111111111122 2233466665443
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCccc-cccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
....+ +.. +.. ...||+||+|||+. |+.+++||.+. +++. ..+....+...+.. ..
T Consensus 355 ~v~~~-----~~~----~~~--------~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~---~~ 412 (604)
T PRK13984 355 RVGKD-----IPL----EEL--------REKHDAVFLSTGFTLGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRG---EG 412 (604)
T ss_pred EeCCc-----CCH----HHH--------HhcCCEEEEEcCcCCCccCCCCCcCCcCeEe--HHHHHHHHHhhhcc---CC
Confidence 22211 111 111 45799999999987 78889999752 2222 22222222222110 00
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CCCCCcHHHHHHHHHHh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---ILSSFDDRLRHYATTQL 294 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~l~~~~~~~~~~~~~~l 294 (351)
.. ...+++|+|||||++|+|+|..+.+++.. .+ ...+|+++...+ .++....+ +.+ +
T Consensus 413 ~~-------~~~~k~VvVIGGG~~g~e~A~~l~r~~~~----~~----g~~~V~v~~~~r~~~~~~~~~~e----~~~-~ 472 (604)
T PRK13984 413 PK-------PKIPRSLVVIGGGNVAMDIARSMARLQKM----EY----GEVNVKVTSLERTFEEMPADMEE----IEE-G 472 (604)
T ss_pred Cc-------CCCCCcEEEECCchHHHHHHHHHHhcccc----cc----CceEEEEeccccCcccCCCCHHH----HHH-H
Confidence 00 02246999999999999999999876410 00 014677764332 23322222 222 3
Q ss_pred hhcCcEEEcCe-EEEEeC--C---eEEec--------CC-----------cEEeccEEEEecCCCCc-cccc
Q 018704 295 SKSGVRLVRGI-VKDVDS--Q---KLILN--------DG-----------TEVPYGLLVWSTGVGPS-TLVK 340 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~--~---~v~~~--------~g-----------~~~~~D~vi~a~G~~p~-~~~~ 340 (351)
.+.||+++++. ++++.. + +|++. +| .++++|.||+|+|+.|+ .++.
T Consensus 473 ~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLP 544 (604)
T ss_pred HHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhh
Confidence 45799999884 666542 1 22221 12 36999999999999998 5553
No 77
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.5e-20 Score=163.94 Aligned_cols=233 Identities=18% Similarity=0.207 Sum_probs=147.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEE-cCCCcc-ccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCV-SPRNHM-VFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vi-e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
...+||+||||||||-+||.+.+|.|.+.-++ |+-.-- .-+..+.+. .+.+.-. ...+....+...+...+...+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENf-Isv~~te--Gpkl~~ale~Hv~~Y~vDimn 285 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENF-ISVPETE--GPKLAAALEAHVKQYDVDVMN 285 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhhe-ecccccc--chHHHHHHHHHHhhcCchhhh
Confidence 45689999999999999999999999986444 331100 000000000 0011100 011111111111222333332
Q ss_pred E-EeeeEeC---CCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc-------cccccCCHHHHHHH
Q 018704 138 S-HCAGIDT---DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-------NATFLREVHHAQEI 206 (351)
Q Consensus 138 ~-~v~~i~~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~-------~~~~~~~~~~~~~~ 206 (351)
. .+.++.+ ....+.+ .+.+|. .+.++.+|+|||++.+..++||.++ +|.+++..
T Consensus 286 ~qra~~l~~a~~~~~l~ev-~l~nGa--------vLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP------ 350 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEV-ELANGA--------VLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP------ 350 (520)
T ss_pred hhhhhcceecCCCCccEEE-EecCCc--------eeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc------
Confidence 2 3333333 2223333 335666 8999999999999999999999863 22222221
Q ss_pred HHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHH
Q 018704 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL 286 (351)
Q Consensus 207 ~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~ 286 (351)
+ -++|+|+|||||+||+|.|..|+..- .+||+++-.+.+ ..
T Consensus 351 ---L-----------------F~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL-----kA 391 (520)
T COG3634 351 ---L-----------------FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL-----KA 391 (520)
T ss_pred ---c-----------------cCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh-----hh
Confidence 1 35579999999999999999999887 899999876443 23
Q ss_pred HHHHHHHhhhc-CcEEEcCe-EEEEeCC-----eEEecC---C--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 287 RHYATTQLSKS-GVRLVRGI-VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 287 ~~~~~~~l~~~-gV~~~~~~-v~~v~~~-----~v~~~~---g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
-+.+++.+... +|.++.+. -+++.++ ++...| | ..++-+.|++-+|..|| +|++.. ++++++|
T Consensus 392 D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rG 467 (520)
T COG3634 392 DAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRG 467 (520)
T ss_pred HHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCc
Confidence 34556666554 89999994 7788764 444432 3 34778999999999999 999986 7777666
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.82 E-value=6.4e-19 Score=157.10 Aligned_cols=251 Identities=20% Similarity=0.316 Sum_probs=175.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccc-hhhhhhhc--cc------ccccccccchhccc-----
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT-PLLASTCV--GT------LEFRSVAEPIARIQ----- 124 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~-~~~~~~~~--~~------~~~~~~~~~~~~~~----- 124 (351)
.+...+|||+|.+..+++..... .+.+|.+|..++.++|. |-+..-.. +. ..+..|.-..+.+.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 45678999999999999888765 67789999988777664 22221111 10 11111111000000
Q ss_pred -------hhhhcCCCeEEEEE-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC-CCc----c
Q 018704 125 -------PAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HGV----K 191 (351)
Q Consensus 125 -------~~~~~~~~~~~~~~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i-~g~----~ 191 (351)
---....++-..++ +|..||...+.+.+ .+|. +|.||.++||||..|+...+ ... .
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~L---nDG~--------~I~YdkcLIATG~~Pk~l~~~~~A~~evk 325 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVIL---NDGT--------TIGYDKCLIATGVRPKKLQVFEEASEEVK 325 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEe---cCCc--------EeehhheeeecCcCcccchhhhhcCHHhh
Confidence 00112234445554 89999999999877 5777 99999999999999887632 221 1
Q ss_pred ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
+.+..++...++..+..-+ ...++|.|||+|..|.|+|+.|.+... ..+.+|+
T Consensus 326 ~kit~fr~p~DF~rlek~~-----------------aek~siTIiGnGflgSELacsl~rk~r----------~~g~eV~ 378 (659)
T KOG1346|consen 326 QKITYFRYPADFKRLEKGL-----------------AEKQSITIIGNGFLGSELACSLKRKYR----------NEGVEVH 378 (659)
T ss_pred hheeEEecchHHHHHHHhh-----------------hhcceEEEEcCcchhhhHHHHHHHhhh----------ccCcEEE
Confidence 4556677777777766544 122599999999999999999987641 2457787
Q ss_pred EEeCC--CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC----CeEEecCCcEEeccEEEEecCCCCc-cccccCC
Q 018704 272 LIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 343 (351)
Q Consensus 272 ~~~~~--~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~----~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~g 343 (351)
-+-.. .+-..++.-+.++..+.++..||.++.+. |.++.. -.+.++||+++..|+||+|+|-.|| ++++..|
T Consensus 379 QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 379 QVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred EeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc
Confidence 66553 22233456788888889999999999995 776643 2567789999999999999999999 8999999
Q ss_pred CCCCCC
Q 018704 344 LPKSPG 349 (351)
Q Consensus 344 l~~~~~ 349 (351)
|++|+.
T Consensus 459 LeiD~~ 464 (659)
T KOG1346|consen 459 LEIDEK 464 (659)
T ss_pred ceeecc
Confidence 999865
No 79
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=163.21 Aligned_cols=229 Identities=25% Similarity=0.316 Sum_probs=168.7
Q ss_pred EEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccc--hhhhhhhcccccccccccchhccchhhhcCCCeE-EEEEE
Q 018704 65 VVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSY-FFLSH 139 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 139 (351)
++|||+|++|+++|..|++ .+.+++++..++...|. +.......+......+..... +....++. +....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-----FNRATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-----hHHhhCCEEeeCCE
Confidence 5899999999999999988 45568877776655443 222222222222221111111 11222444 44468
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (351)
|+.+|...+.+.+. ++ .+.||++|+|||+.|..++ .......+..+...+...+.+...
T Consensus 76 v~~id~~~~~v~~~---~g---------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (415)
T COG0446 76 VTSIDPENKVVLLD---DG---------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAE-------- 134 (415)
T ss_pred EEEecCCCCEEEEC---CC---------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHh--------
Confidence 99999999999873 22 6899999999999999886 221245677888888888777642
Q ss_pred CCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCc-HHHHHHHHHHhhhc
Q 018704 220 PGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKS 297 (351)
Q Consensus 220 p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~-~~~~~~~~~~l~~~ 297 (351)
..++++|||+|..|+++|..+.+.| .+|++++.. ++++.+. +.+.+.+.+.++..
T Consensus 135 ---------~~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (415)
T COG0446 135 ---------PPKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191 (415)
T ss_pred ---------ccCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHC
Confidence 1359999999999999999999887 999999997 4555555 78899999999999
Q ss_pred CcEEEcCe-EEEEeCCe-------EEecCCcEEeccEEEEecCCCCc-cccccC
Q 018704 298 GVRLVRGI-VKDVDSQK-------LILNDGTEVPYGLLVWSTGVGPS-TLVKSL 342 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~-------v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~ 342 (351)
||+++.+. +.+++... +...++..+++|.+++++|.+|+ .+....
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~ 245 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA 245 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhC
Confidence 99999995 89987642 57778889999999999999998 555544
No 80
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.82 E-value=7.4e-20 Score=167.46 Aligned_cols=178 Identities=14% Similarity=0.093 Sum_probs=101.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCccccchhh--hhhhcccc---------------------------
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTL--------------------------- 111 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~~~~~~~--~~~~~~~~--------------------------- 111 (351)
.+|+++||.||++|+.|..|...+ .+++++|+++.+.|++.+ .+.....+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 379999999999999999998865 899999999998887533 22222111
Q ss_pred -------cccccccchhccchhhhcCCCe-EEEEEEeeeEeCCCC----EEEEEee-cCccccCCCceeEeeccEEEEec
Q 018704 112 -------EFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDNH----VVHCETV-TDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 112 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~----~v~~~~~-~~~~~~~~~~~~~~~~d~lviAt 178 (351)
.+......+.++..+.+..... ..+..+|+.|++... .+.+.+. .+|. ...+.+++||+||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~------~~~~~ar~vVla~ 155 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD------GETYRARNVVLAT 155 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-------EEEEEESEEEE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC------eeEEEeCeEEECc
Confidence 0111122223333334433333 455678999887553 3665542 2232 3489999999999
Q ss_pred CCCcCCCCCCC-c--cccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHH
Q 018704 179 GAEASTFGIHG-V--KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (351)
Q Consensus 179 G~~p~~p~i~g-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~ 255 (351)
|..|.+|.+-. . .+.++++.++...... ....++|+|||||.||+|++..|.+.+
T Consensus 156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~--------------------~~~~~~V~VVGgGQSAAEi~~~L~~~~-- 213 (341)
T PF13434_consen 156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQ--------------------SLAGKRVAVVGGGQSAAEIFLDLLRRG-- 213 (341)
T ss_dssp --EE---GGGGGGTT-TTEEEGGGHHHHHT-------------------------EEEEEE-SSHHHHHHHHHHHHH---
T ss_pred CCCCCCCcchhhcCCCCCEEEehHhhhcccc--------------------ccCCCeEEEECCcHhHHHHHHHHHhCC--
Confidence 98898885332 2 1456666555443211 134469999999999999999998765
Q ss_pred HHHhhhcCCCCccEEEEEeCCC
Q 018704 256 DVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+..+|+++.|+.
T Consensus 214 ----------~~~~V~~i~R~~ 225 (341)
T PF13434_consen 214 ----------PEAKVTWISRSP 225 (341)
T ss_dssp ----------TTEEEEEEESSS
T ss_pred ----------CCcEEEEEECCC
Confidence 227899999974
No 81
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.82 E-value=2.1e-19 Score=176.30 Aligned_cols=232 Identities=18% Similarity=0.172 Sum_probs=138.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
....+|+|||+||+||++|..|++.|++|+|+|+.+...... ..+.+.+......+..... .....++.+....
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l-----~~gip~~~~~~~~~~~~l~-~~~~~Gv~~~~~~ 208 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM-----RYGIPAYRLPREVLDAEIQ-RILDLGVEVRLGV 208 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee-----eecCCCccCCHHHHHHHHH-HHHHCCCEEEeCC
Confidence 456799999999999999999999999999999887643211 1122222111111111112 2223455544332
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcccc-ccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
..+.+... +.. ...||.||+|||+. +..+.+++.+.. .+. ...+...... ..
T Consensus 209 ~~~~~~~~---------~~~--------~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~------~~~~l~~~~~---~~ 262 (564)
T PRK12771 209 RVGEDITL---------EQL--------EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLD------AVDFLRAVGE---GE 262 (564)
T ss_pred EECCcCCH---------HHH--------HhhCCEEEEeeCCCCCCcCCCCCCccCCcEE------HHHHHHHhhc---cC
Confidence 11111100 001 34599999999987 455678875421 111 1111111100 00
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~ 295 (351)
....+++++|||+|++|+|++..+.+++. .+|+++++.. .++.....+ +.+.
T Consensus 263 --------~~~~gk~v~ViGgg~~a~d~a~~a~~lga-------------~~v~ii~r~~~~~~~~~~~~~-----~~a~ 316 (564)
T PRK12771 263 --------PPFLGKRVVVIGGGNTAMDAARTARRLGA-------------EEVTIVYRRTREDMPAHDEEI-----EEAL 316 (564)
T ss_pred --------CcCCCCCEEEECChHHHHHHHHHHHHcCC-------------CEEEEEEecCcccCCCCHHHH-----HHHH
Confidence 01235699999999999999988877652 5789988863 334333332 2345
Q ss_pred hcCcEEEcCe-EEEEeCC--e--------EEe----cCC---------cEEeccEEEEecCCCCc-ccccc-CCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ--K--------LIL----NDG---------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPG 349 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~--~--------v~~----~~g---------~~~~~D~vi~a~G~~p~-~~~~~-~gl~~~~~ 349 (351)
+.||+++++. +.++..+ + +.+ .+| .++++|.||+|+|+.|+ +++++ .+++ +++
T Consensus 317 ~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~ 395 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGR 395 (564)
T ss_pred HcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCC
Confidence 6799999984 8787542 1 111 122 36899999999999999 77775 4665 555
Q ss_pred C
Q 018704 350 G 350 (351)
Q Consensus 350 G 350 (351)
|
T Consensus 396 G 396 (564)
T PRK12771 396 G 396 (564)
T ss_pred C
Confidence 5
No 82
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.82 E-value=8.3e-20 Score=173.06 Aligned_cols=175 Identities=18% Similarity=0.169 Sum_probs=114.3
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCccccch---hhhhhhcc-------cc-----------cccccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTP---LLASTCVG-------TL-----------EFRSVA 117 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~~~~---~~~~~~~~-------~~-----------~~~~~~ 117 (351)
.+.+||+|||||++||++|+.|.++|.+ ++|+|++......+ ...+.+.. .+ .+....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 4568999999999999999999999999 99999987553221 11111111 00 000011
Q ss_pred cchhccchhhhcCCCeEEEE-EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC--CcCCCCCCCccc--
Q 018704 118 EPIARIQPAISREPGSYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVKE-- 192 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~~-- 192 (351)
..+..+.+.+.....+.+.. .++...+.+.+.|.++...++. .++.+|+||+|||. .|+.|.++|.++
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-------~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~ 158 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-------GELTADFVVVATGHLSEPYIPDFAGLDEFK 158 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-------eeEecCEEEEeecCCCCCCCCCCCCccCCC
Confidence 12222222222222222222 2444445555678876543332 12779999999996 499999999873
Q ss_pred -cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 193 -NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
..+|..++.+... -++|+|+|||+|+||++++.+|...+ .+|+
T Consensus 159 g~~~HS~~~~~~~~----------------------~~GKrV~VIG~GaSA~di~~~l~~~g--------------a~vt 202 (443)
T COG2072 159 GRILHSADWPNPED----------------------LRGKRVLVIGAGASAVDIAPELAEVG--------------ASVT 202 (443)
T ss_pred ceEEchhcCCCccc----------------------cCCCeEEEECCCccHHHHHHHHHhcC--------------CeeE
Confidence 3455555554444 34469999999999999999999877 8999
Q ss_pred EEeCCC
Q 018704 272 LIEANE 277 (351)
Q Consensus 272 ~~~~~~ 277 (351)
+++|+.
T Consensus 203 ~~qRs~ 208 (443)
T COG2072 203 LSQRSP 208 (443)
T ss_pred EEecCC
Confidence 999974
No 83
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.81 E-value=2.4e-20 Score=159.52 Aligned_cols=167 Identities=21% Similarity=0.208 Sum_probs=95.9
Q ss_pred EEECCchhHHHHHHhhhccCce-EEEEcCCCccccchh------------hhhhhcccccc----------------ccc
Q 018704 66 VVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPL------------LASTCVGTLEF----------------RSV 116 (351)
Q Consensus 66 vIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~~~~~------------~~~~~~~~~~~----------------~~~ 116 (351)
+||||||+||++|.+|.+.|.+ ++|||+++....... ......+...+ ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 999998855421110 00000000000 001
Q ss_pred ccchhccchhhhcCCCeEE-EEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC--CcCCCCCCC-ccc
Q 018704 117 AEPIARIQPAISREPGSYF-FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHG-VKE 192 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~p~~p~i~g-~~~ 192 (351)
...+.++...+....+..+ ...+|+++..+.+.|.++. .++. ++.+|+||+|||. .|+.|.+|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~--------~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGR--------TIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS---------EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecc--------eeeeeeEEEeeeccCCCCcccccccccc
Confidence 1112233333333444433 4468899988877787765 4444 8899999999996 699999999 434
Q ss_pred cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEE
Q 018704 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (351)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~ 272 (351)
..++...+.+... ...|+|+|||+|+||+|++..|.+.+ .+|++
T Consensus 152 ~~~h~~~~~~~~~----------------------~~~k~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRDPED----------------------FKGKRVVVVGGGNSAVDIAYALAKAG--------------KSVTL 195 (203)
T ss_dssp EEEEGGG-STTGG----------------------CTTSEEEEE--SHHHHHHHHHHTTTC--------------SEEEE
T ss_pred ceEehhhcCChhh----------------------cCCCcEEEEcChHHHHHHHHHHHhhC--------------CEEEE
Confidence 4444433322211 34469999999999999999999876 89999
Q ss_pred EeCCC
Q 018704 273 IEANE 277 (351)
Q Consensus 273 ~~~~~ 277 (351)
+.|.+
T Consensus 196 ~~R~~ 200 (203)
T PF13738_consen 196 VTRSP 200 (203)
T ss_dssp EESS-
T ss_pred EecCC
Confidence 99974
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=163.93 Aligned_cols=244 Identities=18% Similarity=0.191 Sum_probs=150.1
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
.+..+|+|||||||||+||..|++.|++|+++|+.+..... ...|.+.+. +...+.+..-.+....++.|....
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-----l~yGIP~~k-l~k~i~d~~i~~l~~~Gv~~~~~~ 194 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-----LLYGIPDFK-LPKDILDRRLELLERSGVEFKLNV 194 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee-----EEecCchhh-ccchHHHHHHHHHHHcCeEEEEcc
Confidence 44589999999999999999999999999999997764211 222455554 333444444444455568887665
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc-
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML- 216 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (351)
..+.+.....+ ...||++++|||+. |+..++||.+ +++. .+..+...+......
T Consensus 195 ~vG~~it~~~L-----------------~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~------~A~dfL~~~~~~~~~~ 251 (457)
T COG0493 195 RVGRDITLEEL-----------------LKEYDAVFLATGAGKPRPLDIPGEDAKGVA------FALDFLTRLNKEVLGD 251 (457)
T ss_pred eECCcCCHHHH-----------------HHhhCEEEEeccccCCCCCCCCCcCCCcch------HHHHHHHHHHHHHhcc
Confidence 55443332222 34569999999986 9999999975 2333 333333222211111
Q ss_pred ---cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--C-CCCCCcHHHHHHH
Q 018704 217 ---SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYA 290 (351)
Q Consensus 217 ---~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~l~~~~~~~~~~~ 290 (351)
...|. ..+|+|+|||||++++|++....++|. ..|+.+++. + -....+.......
T Consensus 252 ~~~~~~~~------~~gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~ 312 (457)
T COG0493 252 FAEDRTPP------AKGKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLE 312 (457)
T ss_pred cccccCCC------CCCCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhh
Confidence 12231 334799999999999999999888884 578888643 1 1121222223444
Q ss_pred HHHhhhcCcEEEcC-eEEEEeC-----------CeEEec--------------CC--cEEeccEEEEecCCCCc--ccc-
Q 018704 291 TTQLSKSGVRLVRG-IVKDVDS-----------QKLILN--------------DG--TEVPYGLLVWSTGVGPS--TLV- 339 (351)
Q Consensus 291 ~~~l~~~gV~~~~~-~v~~v~~-----------~~v~~~--------------~g--~~~~~D~vi~a~G~~p~--~~~- 339 (351)
.+.+.+.|+..+.. .-.++.. ..+... .| ..+++|.|+.|+|+.++ .+.
T Consensus 313 ~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~ 392 (457)
T COG0493 313 VRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLL 392 (457)
T ss_pred hhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccc
Confidence 56667777766654 2333321 122111 12 24789999999999988 322
Q ss_pred ccCCCCCCCCCC
Q 018704 340 KSLDLPKSPGGR 351 (351)
Q Consensus 340 ~~~gl~~~~~G~ 351 (351)
...++..+++|+
T Consensus 393 ~~~~~~~~~~g~ 404 (457)
T COG0493 393 LEFGLKLDKRGR 404 (457)
T ss_pred cccccccCCCCc
Confidence 222566666663
No 85
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.76 E-value=9.8e-19 Score=170.97 Aligned_cols=215 Identities=20% Similarity=0.203 Sum_probs=133.4
Q ss_pred cccccccCcccccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhc
Q 018704 4 FKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDT 83 (351)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~ 83 (351)
.+|-=+..-+.|.-.|... ...++....+.+...-+++-. ..|...-++...+.++|.|||+|||||+||.+|.+
T Consensus 1732 peftgrvcpapcegactlg-iie~pv~iksie~aiid~af~----egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1732 PEFTGRVCPAPCEGACTLG-IIEPPVGIKSIECAIIDKAFE----EGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred ccccCccCCCCcCcceeee-cccCCccccchhhHHHHHHHH----hcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence 3333444445555555333 233344556666665555443 23323333344667999999999999999999999
Q ss_pred cCceEEEEcCCCccccchhhhhhh-cccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccC
Q 018704 84 SLYDVVCVSPRNHMVFTPLLASTC-VGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (351)
Q Consensus 84 ~g~~v~vie~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~ 162 (351)
.|+.|+|+|+.++.. +.. .|.+.. .+.+.+.+.+-.+....++.|+...-.+-+ +.+ ++-
T Consensus 1807 ~gh~v~vyer~dr~g------gll~ygipnm-kldk~vv~rrv~ll~~egi~f~tn~eigk~-----vs~----d~l--- 1867 (2142)
T KOG0399|consen 1807 AGHTVTVYERSDRVG------GLLMYGIPNM-KLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-----VSL----DEL--- 1867 (2142)
T ss_pred cCcEEEEEEecCCcC------ceeeecCCcc-chhHHHHHHHHHHHHhhCceEEeecccccc-----ccH----HHH---
Confidence 999999999988743 222 233333 344445555555666678888765444322 322 222
Q ss_pred CCceeEeeccEEEEecCCC-cCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChH
Q 018704 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (351)
Q Consensus 163 ~~~~~~~~~d~lviAtG~~-p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~ 241 (351)
.-.+|+||+|+|+. |+.+++||-+- ..+..+.++.++-...+-.+..-+. -...++|+|+|||||++
T Consensus 1868 -----~~~~daiv~a~gst~prdlpv~grd~-----kgv~fame~l~~ntk~lld~~~d~~--~~~~~gkkvivigggdt 1935 (2142)
T KOG0399|consen 1868 -----KKENDAIVLATGSTTPRDLPVPGRDL-----KGVHFAMEFLEKNTKSLLDSVLDGN--YISAKGKKVIVIGGGDT 1935 (2142)
T ss_pred -----hhccCeEEEEeCCCCCcCCCCCCccc-----cccHHHHHHHHHhHHhhhccccccc--eeccCCCeEEEECCCCc
Confidence 56799999999986 99999999752 2333444444433222222222111 11245689999999999
Q ss_pred HHHHHHHHHHHHH
Q 018704 242 GVEFSGELSDFIM 254 (351)
Q Consensus 242 a~e~a~~l~~~~~ 254 (351)
|-|+...-.+.|+
T Consensus 1936 g~dcigtsvrhg~ 1948 (2142)
T KOG0399|consen 1936 GTDCIGTSVRHGC 1948 (2142)
T ss_pred cccccccchhhcc
Confidence 9999998888775
No 86
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=5.9e-17 Score=145.18 Aligned_cols=252 Identities=15% Similarity=0.152 Sum_probs=148.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCccccchhh--hhhhcccc-------------------------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTL------------------------- 111 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~~~~~~~--~~~~~~~~------------------------- 111 (351)
+...|++.||-||+-|+.|..|...+ .+...+|+++.+.|+|.. .+.....+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 45689999999999999999999855 789999999999888432 22111111
Q ss_pred ---------cccccccchhccchhhhcCCCeEEEEEEee---eEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 112 ---------EFRSVAEPIARIQPAISREPGSYFFLSHCA---GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
.+........++..+.+.......+..+|+ .++.+..........++. ++.+++||+++|
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~--------~y~ar~lVlg~G 154 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGT--------VYRARNLVLGVG 154 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCc--------EEEeeeEEEccC
Confidence 000111122222222333333333456777 455554443222223444 899999999999
Q ss_pred CCcCCCC-CCCcc-ccccccCCHHH-HHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHH
Q 018704 180 AEASTFG-IHGVK-ENATFLREVHH-AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (351)
Q Consensus 180 ~~p~~p~-i~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~ 256 (351)
.+|.+|+ +..+. +.+++...+.+ ..++ ...++|+|||+|.||+|+-..|..-.
T Consensus 155 ~~P~IP~~f~~l~~~~vfHss~~~~~~~~~---------------------~~~~~V~ViG~GQSAAEi~~~Ll~~~--- 210 (436)
T COG3486 155 TQPYIPPCFRSLIGERVFHSSEYLERHPEL---------------------LQKRSVTVIGSGQSAAEIFLDLLNSQ--- 210 (436)
T ss_pred CCcCCChHHhCcCccceeehHHHHHhhHHh---------------------hcCceEEEEcCCccHHHHHHHHHhCC---
Confidence 9999983 22221 45665444321 1111 12235999999999999988876421
Q ss_pred HHhhhcCCCCccEEEEEeCCC-CCCC---------C-----------cH-------------------HHHHHHHHHhh-
Q 018704 257 VRQRYSHVKDYIHVTLIEANE-ILSS---------F-----------DD-------------------RLRHYATTQLS- 295 (351)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~-~l~~---------~-----------~~-------------------~~~~~~~~~l~- 295 (351)
+. ...++.++.|+. ++|. + ++ +....+.+.|.
T Consensus 211 -----~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 211 -----PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred -----CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 11 113578888863 2221 1 11 11222222222
Q ss_pred ------hcCcEEEcC-eEEEEeCCe---EEec-------CCcEEeccEEEEecCCCCc--cccccCC--CCCCCCC
Q 018704 296 ------KSGVRLVRG-IVKDVDSQK---LILN-------DGTEVPYGLLVWSTGVGPS--TLVKSLD--LPKSPGG 350 (351)
Q Consensus 296 ------~~gV~~~~~-~v~~v~~~~---v~~~-------~g~~~~~D~vi~a~G~~p~--~~~~~~g--l~~~~~G 350 (351)
+..|.++.+ +|..++..+ +.+. +..+++.|.||+|||++.. +|++.+. |..|++|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g 359 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDG 359 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccC
Confidence 345777877 488887632 4441 2346899999999999966 4777653 4445544
No 87
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.66 E-value=1.6e-14 Score=131.67 Aligned_cols=174 Identities=22% Similarity=0.338 Sum_probs=97.2
Q ss_pred CceeEeeccEEEEecCCCcCCCCCCCccccccc-cCCHHHHHHHHHHHHHhhhccCCCC--CCHhhhcccCeEEE---EC
Q 018704 164 PWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPG--ISEEEKSRLLHCVV---VG 237 (351)
Q Consensus 164 ~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~v~V---vG 237 (351)
++..++....+|+|||-.+..+.-.. +..+. +.++-...++-+.+..+ +..-| ..+...+..|+|+. ||
T Consensus 294 ~e~ve~~vGaIIvAtGy~~~Da~~k~--EyGYG~~~nVIT~lElErml~~~---GPT~GkvlrpSdg~~pKrVaFIqCVG 368 (622)
T COG1148 294 PEEVELEVGAIIVATGYKPFDATRKE--EYGYGKYPNVITNLELERMLNPN---GPTGGKVLRPSDGKPPKRVAFIQCVG 368 (622)
T ss_pred CcEEEEEeceEEEEccccccCcchhh--hcCCCCCcchhhHHHHHHHhccC---CCCCceEEecCCCCCCceEEEEEEec
Confidence 34568899999999998876653221 11111 11222223333222100 00000 11223344567776 46
Q ss_pred CCh--------HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEE
Q 018704 238 GGP--------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (351)
Q Consensus 238 gG~--------~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v 309 (351)
+-+ |-+-++..|.+ +..++++||. .+|++++-+- +.++....+...+.-++.||+++.|++.++
T Consensus 369 SRD~~~~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDi--RafG~~yEefY~~~Q~~~gV~fIRGrvaei 440 (622)
T COG1148 369 SRDFQVGNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDI--RAFGKDYEEFYVRSQEDYGVRFIRGRVAEI 440 (622)
T ss_pred CcCcccCChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEe--eccCccHHHHHHhhhhhhchhhhcCChHHh
Confidence 554 33334434433 4567777877 8899887752 222222223333333367999999975555
Q ss_pred e---CCe--EEecC---C--cEEeccEEEEecCCCCc----cccccCCCCCCCCC
Q 018704 310 D---SQK--LILND---G--TEVPYGLLVWSTGVGPS----TLVKSLDLPKSPGG 350 (351)
Q Consensus 310 ~---~~~--v~~~~---g--~~~~~D~vi~a~G~~p~----~~~~~~gl~~~~~G 350 (351)
. +++ |..+| | .++++|+||+++|+.|. .+.+.|||+.+++|
T Consensus 441 ~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~g 495 (622)
T COG1148 441 AEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDG 495 (622)
T ss_pred eeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCC
Confidence 3 344 33332 3 36889999999999986 46677899998877
No 88
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.62 E-value=5.4e-15 Score=138.65 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhh-ccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~-~~g~~v~vie~~~~~~ 98 (351)
..++|+|||||||||+||.+|. +.|++|+|+|+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 3578999999999999999864 6899999999988753
No 89
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.59 E-value=1e-14 Score=126.43 Aligned_cols=251 Identities=16% Similarity=0.213 Sum_probs=164.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCc-eEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLY-DVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
.+++|+|||||.+|+++|..+.+ .+. +|.|+|+.+.+.|.|.+.-...|......-.....+..+ .+..|+..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP-----~~a~wi~e 112 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIP-----KGATWIKE 112 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccccc-----CCcHHHHH
Confidence 56899999999999999999976 443 699999999999999887766665444333333333322 24666778
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-----ccccccCCHHHHHHHHHHHHHh
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-----ENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-----~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
+|...+++.+.+.+ ++|+ +|+||++|||+|.+-++-.|+|+- +.+.+..+.......-..+..
T Consensus 113 kv~~f~P~~N~v~t---~gg~--------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~- 180 (446)
T KOG3851|consen 113 KVKEFNPDKNTVVT---RGGE--------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMN- 180 (446)
T ss_pred HHHhcCCCcCeEEc---cCCc--------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHh-
Confidence 89999999999987 4677 999999999999987777788774 455555565555555444421
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCc-HHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD-DRLRHYATT 292 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~-~~~~~~~~~ 292 (351)
| +.+.-+--.-.+++-|--|.+-.-+..++++++... + .++.++..-.+..-|+ ....+.+++
T Consensus 181 f-------------k~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gv-R--d~a~iiy~Tsl~~iFgVk~Y~~AL~k 244 (446)
T KOG3851|consen 181 F-------------KKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGV-R--DNANIIYNTSLPTIFGVKHYADALEK 244 (446)
T ss_pred c-------------cCCceEEecCCCccccCCCchhhhhhhHHHHHHhCc-c--ccccEEEecCccceecHHHHHHHHHH
Confidence 1 222233334444444433333333334444444322 2 3455555533322333 456678888
Q ss_pred HhhhcCcEEEcCe-EEEEeCC--eEEec---C-C--cEEeccEEEEecCCCCccccccCCC
Q 018704 293 QLSKSGVRLVRGI-VKDVDSQ--KLILN---D-G--TEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 293 ~l~~~gV~~~~~~-v~~v~~~--~v~~~---~-g--~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..++++|++...+ ..+|..+ ..+++ + | .+++++++-+.+...+.+++....+
T Consensus 245 ~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~ 305 (446)
T KOG3851|consen 245 VIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDL 305 (446)
T ss_pred HHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcc
Confidence 8899999998875 7777653 23332 2 4 3588999999998888766665543
No 90
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=121.03 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=108.7
Q ss_pred cEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCe---EEEEE
Q 018704 64 RVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGS---YFFLS 138 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 138 (351)
+.+|||||+||.+||..|+. ...+++|+...+..-...++-... ...+.+++.+.- ....+- .++..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~-~ylekfdv~eq~-------~~elg~~f~~~~~~ 72 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIG-QYLEKFDVKEQN-------CHELGPDFRRFLND 72 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHH-HHHHhcCccccc-------hhhhcccHHHHHHh
Confidence 36899999999999999987 556899988755432111111110 000111110000 000111 12233
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
|..++.+++.+++ .+|. ++.|++|++|||..|.... .|.++.+...++.+.+..++.++
T Consensus 73 -v~~~~s~ehci~t---~~g~--------~~ky~kKOG~tg~kPklq~-E~~n~~Iv~irDtDsaQllq~kl-------- 131 (334)
T KOG2755|consen 73 -VVTWDSSEHCIHT---QNGE--------KLKYFKLCLCTGYKPKLQV-EGINPKIVGIRDTDSAQLLQCKL-------- 131 (334)
T ss_pred -hhhhccccceEEe---cCCc--------eeeEEEEEEecCCCcceee-cCCCceEEEEecCcHHHHHHHHH--------
Confidence 7778888888877 4666 9999999999999998763 33557778888898888888887
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.++|.|.++|.|-+++|++.++.. .+|++...++
T Consensus 132 ---------~kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~ 165 (334)
T KOG2755|consen 132 ---------VKAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDE 165 (334)
T ss_pred ---------hhcceEEEEecCchhHHHHHHhhc----------------ceeEEEecch
Confidence 677899999999999999999875 6677776654
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.56 E-value=2.1e-15 Score=128.55 Aligned_cols=149 Identities=26% Similarity=0.306 Sum_probs=94.5
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch-hhhh-hhcccccccccccchh--ccchhhhcCCCeEE-EEE
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP-LLAS-TCVGTLEFRSVAEPIA--RIQPAISREPGSYF-FLS 138 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 138 (351)
||||||||+|||+||.+|++.+.+++|+|+.+...+.. .+.. ................ .+.+.+ ...++.+ +..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQL-KNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHH-HHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccccccccccccccccccccccccccc-ccceEEEeecc
Confidence 79999999999999999999999999999877654321 1111 1000000000000000 111111 2245666 567
Q ss_pred EeeeEeCCCCEE-----EEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHh
Q 018704 139 HCAGIDTDNHVV-----HCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 139 ~v~~i~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
++..++...+.+ .......+. ..++.||+||+|||..|++|.+||. +.......+.++..+.+..
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~--- 149 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGD------GREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELL--- 149 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTT------EEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHS---
T ss_pred ccccccccccccccCcccceeeccCC------ceEecCCeeeecCccccceeecCCC-ccccccccccccccccccc---
Confidence 889999888853 221111111 2389999999999999999999997 3445557777777777654
Q ss_pred hhccCCCCCCHhhhcccCeEEEEC
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVG 237 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvG 237 (351)
...++++|||
T Consensus 150 --------------~~~~~v~VvG 159 (201)
T PF07992_consen 150 --------------ESPKRVAVVG 159 (201)
T ss_dssp --------------STTSEEEEES
T ss_pred --------------cccccccccc
Confidence 2234999999
No 92
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.51 E-value=1.7e-13 Score=121.55 Aligned_cols=180 Identities=19% Similarity=0.180 Sum_probs=103.4
Q ss_pred CcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
++|+|||+||||+.+|..|.+ .+++|+|+|+.+....- .-++.....++.......+... ++.....|+..--
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAPDHpEvKnvintFt~~----aE~~rfsf~gNv~ 95 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAPDHPEVKNVINTFTKT----AEHERFSFFGNVK 95 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce-eeeccCCCCcchhhHHHHHHHH----hhccceEEEecce
Confidence 589999999999999999977 57899999997753211 0112222222222222222222 2223333332211
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
. +..+.+..+ +-.||+||+|+|+. ++.++|||.+ ..++ .+.++.++. ..
T Consensus 96 v-----G~dvsl~eL------------~~~ydavvLaYGa~~dR~L~IPGe~l~~V~------Sarefv~Wy------ng 146 (468)
T KOG1800|consen 96 V-----GRDVSLKEL------------TDNYDAVVLAYGADGDRRLDIPGEELSGVI------SAREFVGWY------NG 146 (468)
T ss_pred e-----cccccHHHH------------hhcccEEEEEecCCCCcccCCCCcccccce------ehhhhhhhc------cC
Confidence 1 122322221 56799999999987 9999999975 2232 445555553 22
Q ss_pred CCCCC-HhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH-hhhc-------CCCCccEEEEEeCC
Q 018704 219 VPGIS-EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR-QRYS-------HVKDYIHVTLIEAN 276 (351)
Q Consensus 219 ~p~~~-~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~-~~~~-------~~~~~~~v~~~~~~ 276 (351)
.|... .+....+.+|+|||.|++++|+|+.|........+ ..++ ...+-.+|+++-|+
T Consensus 147 ~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRR 213 (468)
T KOG1800|consen 147 LPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRR 213 (468)
T ss_pred CCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEecc
Confidence 23211 01112356999999999999999999763321110 0111 11244678888875
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.43 E-value=7.7e-12 Score=112.87 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=59.9
Q ss_pred cEEEEEeCCCCCCC--CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecC--CCCc--
Q 018704 268 IHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTG--VGPS-- 336 (351)
Q Consensus 268 ~~v~~~~~~~~l~~--~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G--~~p~-- 336 (351)
+..+.=+.+++.|. -...+.+.+...+++.||+++++. |.+++.+ .+.+.+|.++.||.+|+|+| ..|.
T Consensus 93 i~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lG 172 (408)
T COG2081 93 IALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLG 172 (408)
T ss_pred CeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCC
Confidence 44444444466554 236788999999999999999995 9999765 45567888899999999999 5662
Q ss_pred ------cccccCCCCCC
Q 018704 337 ------TLVKSLDLPKS 347 (351)
Q Consensus 337 ------~~~~~~gl~~~ 347 (351)
++++++|+++.
T Consensus 173 stg~gy~iA~~~G~~I~ 189 (408)
T COG2081 173 STGFGYPIARQFGHTIT 189 (408)
T ss_pred CCchhhHHHHHcCCccc
Confidence 57777777653
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.31 E-value=2.2e-11 Score=87.53 Aligned_cols=74 Identities=34% Similarity=0.577 Sum_probs=65.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v 309 (351)
+++|||||++|+|+|..|.+++ .+|+++++++ +++.+++++.+.+.+.+++.||+++++. ++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 5899999999999999999887 9999999984 6688999999999999999999999995 9988
Q ss_pred eC--Ce--EEecCC
Q 018704 310 DS--QK--LILNDG 319 (351)
Q Consensus 310 ~~--~~--v~~~~g 319 (351)
+. ++ |.++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 75 34 777776
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.29 E-value=2.1e-10 Score=106.14 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=101.1
Q ss_pred CcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCcc----ccchhhhhhh-----------------------ccc--
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHM----VFTPLLASTC-----------------------VGT-- 110 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~----~~~~~~~~~~-----------------------~~~-- 110 (351)
++|+|||+|++|+.+|.+|.+ ....+.|||+.+.+ .|.+..+... .+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 689999999999999999976 22239999977654 2221111000 000
Q ss_pred ---------------ccccccccchhccchhhhcCCC---eEEEEEEeeeEeCC--CCEEEEEeecCccccCCCceeEee
Q 018704 111 ---------------LEFRSVAEPIARIQPAISREPG---SYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKIS 170 (351)
Q Consensus 111 ---------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~--~~~v~~~~~~~~~~~~~~~~~~~~ 170 (351)
+...-+..++.+....+..... +.++..+++++..+ ...+.+. ..+|. ...
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~-~~~g~--------~~~ 152 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT-TADGP--------SEI 152 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEe-cCCCC--------eee
Confidence 0001112223333333333333 67778888888776 3344443 35666 889
Q ss_pred ccEEEEecCCCcCCCCCCCcc--ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHH
Q 018704 171 YDKLVIALGAEASTFGIHGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248 (351)
Q Consensus 171 ~d~lviAtG~~p~~p~i~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~ 248 (351)
+|-+|+|||..+-++..-..+ +..-.+.+......+.+ .+..-+|+|+|+|.+-+|....
T Consensus 153 ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~------------------v~~~drVli~GsgLt~~D~v~~ 214 (474)
T COG4529 153 ADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDG------------------VDADDRVLIVGSGLTSIDQVLV 214 (474)
T ss_pred eeEEEEeccCCCCCcchhhhccCCCcceeccccCCccccc------------------ccCCCceEEecCCchhHHHHHH
Confidence 999999999864444321111 00001111111111111 1222379999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 249 LSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
|.+.| ++..+|++.|..
T Consensus 215 l~~~g------------h~g~It~iSRrG 231 (474)
T COG4529 215 LRRRG------------HKGPITAISRRG 231 (474)
T ss_pred HhccC------------CccceEEEeccc
Confidence 98755 347888888853
No 96
>PRK09897 hypothetical protein; Provisional
Probab=99.16 E-value=4.8e-10 Score=108.26 Aligned_cols=185 Identities=12% Similarity=0.081 Sum_probs=100.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcc----ccchhh--hhhhcc-------------------------
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM----VFTPLL--ASTCVG------------------------- 109 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~----~~~~~~--~~~~~~------------------------- 109 (351)
++|+||||||+|+++|..|.+. .++|+|||++..+ .|.+.- ......
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 5899999999999999999764 4589999986543 233210 000000
Q ss_pred --------------cccccccccchhccchhhhc---CCC--eEEE-EEEeeeEeCCCCEEEEEeecCccccCCCceeEe
Q 018704 110 --------------TLEFRSVAEPIARIQPAISR---EPG--SYFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKI 169 (351)
Q Consensus 110 --------------~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (351)
.+....+..++.+....+.. ..+ +.++ ..+|+.++.....+.+...+++. .+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~--------~i 153 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLP--------SE 153 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCe--------EE
Confidence 00000111222222222211 112 3444 45899998887777775433344 78
Q ss_pred eccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHH
Q 018704 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249 (351)
Q Consensus 170 ~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l 249 (351)
.+|+||+|||..+..+ .++. . .+. ...+.... +..+| ..+|+|+|.|-+++|++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~-~-~yi-~~pw~~~~----------~~~i~---------~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEAT-R-TYF-PSPWSGLM----------EAKVD---------ACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhh-c-ccc-CCCCcchh----------hcCCC---------CCeEEEECCCHHHHHHHHHH
Confidence 9999999999753111 1111 1 111 11111100 01111 24999999999999999999
Q ss_pred HHHHHH-------HHHhhhcCCCCccEEEEEeCCCC
Q 018704 250 SDFIMR-------DVRQRYSHVKDYIHVTLIEANEI 278 (351)
Q Consensus 250 ~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~ 278 (351)
...+.. .+.-.|.......+++++-|+.+
T Consensus 211 t~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 211 AIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 854210 00011122235568888888643
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.11 E-value=3.9e-10 Score=105.65 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEe--CCe---EEecCCcEEeccEEEEecCCCCc----------cccccCCCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS----------TLVKSLDLP 345 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~~---v~~~~g~~~~~D~vi~a~G~~p~----------~~~~~~gl~ 345 (351)
..++.+.+.+.+++.||++++++ |.++. +++ |.++++.++.||.||+|+|-... .|++.+|..
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~ 186 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHT 186 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCc
Confidence 36778889999999999999995 99885 344 56667788999999999985432 356666654
No 98
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.08 E-value=1.6e-09 Score=100.22 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=58.2
Q ss_pred HHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C---eEEecCCcEEeccEEE
Q 018704 256 DVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLV 328 (351)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~---~v~~~~g~~~~~D~vi 328 (351)
++.+.+|...+...-.+..... .+ .+..+.+.+.+.+++.|++++.+ +|+++.. + +|.+.+|+ +.+|.||
T Consensus 120 ~~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV 196 (358)
T PF01266_consen 120 ELRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVV 196 (358)
T ss_dssp HHHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEE
T ss_pred hhhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeE
Confidence 3444455544444444544432 11 24678888889999999999999 5998863 3 37788887 9999999
Q ss_pred EecCCCCccccccCCC
Q 018704 329 WSTGVGPSTLVKSLDL 344 (351)
Q Consensus 329 ~a~G~~p~~~~~~~gl 344 (351)
+|+|.+...++..+++
T Consensus 197 ~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 197 LAAGAWSPQLLPLLGL 212 (358)
T ss_dssp E--GGGHHHHHHTTTT
T ss_pred ecccccceeeeecccc
Confidence 9999887777776665
No 99
>PLN02463 lycopene beta cyclase
Probab=99.05 E-value=1.3e-09 Score=103.50 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=73.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhh---hh--cc--------cccc-------------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---TC--VG--------TLEF------------- 113 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~---~~--~~--------~~~~------------- 113 (351)
...+||+||||||||+++|..|++.|++|+|+|+.+...+...+.. .. .+ ....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 3458999999999999999999999999999998764433211100 00 00 0000
Q ss_pred ccc----ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 114 RSV----AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+ ...+.+.........++.+...+|+.++.+...+.+.. ++|. ++.+|.||.|+|......
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~-~dG~--------~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVC-DDGV--------KIQASLVLDATGFSRCLV 172 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEE-CCCC--------EEEcCEEEECcCCCcCcc
Confidence 000 00011111111123467787889999988777666544 4565 899999999999875543
No 100
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.98 E-value=5.9e-09 Score=97.09 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcE-EeccEEEEecCCCCccccccCCCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 347 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~gl~~~ 347 (351)
.++...+.+.++++|++++.++ |++++. + .+.+.+|++ ++|+.||.|.|.-...++...|++.+
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 4567778888888899999994 998864 4 344567766 99999999999988888888777653
No 101
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.97 E-value=1.3e-08 Score=97.90 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhh----cC--cEEEcCe-EEEEeCC-----eEEecCCcEEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSK----SG--VRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~----~g--V~~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+...+.+.+++ .| ++++.++ |++++.+ .|.+.+| ++.+|.||+|+|.+...++..+|+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~ 283 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCC
Confidence 4667778888888 67 8899984 9888642 3555666 6999999999998888777777664
No 102
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.95 E-value=4.8e-09 Score=98.68 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=65.7
Q ss_pred EEECCChHHHHHH-HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEe
Q 018704 234 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD 310 (351)
Q Consensus 234 ~VvGgG~~a~e~a-~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~ 310 (351)
+|++.+.+|+|.+ ..+.++.. .-+.+|+++... +.++.. ++.+.+.+.+++.|++++.+. |.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~----------~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEE----------ALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHH----------HHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 6788899999998 55543210 012899999876 355543 788889999999999999994 88875
Q ss_pred C--CeEE---ecCCc--EEeccEEEEecCCCCc
Q 018704 311 S--QKLI---LNDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 311 ~--~~v~---~~~g~--~~~~D~vi~a~G~~p~ 336 (351)
. +++. ..+|+ .+++|.||+|+|..+.
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence 3 3332 33443 4899999999998766
No 103
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.95 E-value=1.4e-08 Score=94.73 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhc-CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCccccc
Q 018704 284 DRLRHYATTQLSKS-GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 284 ~~~~~~~~~~l~~~-gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 340 (351)
..+...+.+.+.+. |++++.++ |.+++.+.|.+.+|. +.||.||+|+|...+.++.
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s~~l~~ 202 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADFETLFP 202 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCChhhhCc
Confidence 45666777777665 99999984 999987778887774 7899999999987665443
No 104
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.91 E-value=7.5e-08 Score=90.31 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..+.+.+.+.+++.|++++.++ |.+++. +. |.+.+| ++.+|.||+|+|.+...+...+|+
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhccc
Confidence 4566777788888999999994 888864 32 444555 799999999999876655555543
No 105
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.90 E-value=5.9e-09 Score=94.04 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=32.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++|+++|+.|++.|++|+|+|+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 58999999999999999999999999999988653
No 106
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.87 E-value=7.3e-09 Score=97.67 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~ 100 (351)
+++||+||||||||++||+.|++.|++|+|+|+++...+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 4689999999999999999999999999999988765443
No 107
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.87 E-value=4.6e-08 Score=92.24 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|++++.+. |++++. + .+++++|.++.+|.||.|.|..+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 556666777778899999994 888754 3 356678888999999999999885
No 108
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.87 E-value=4.9e-08 Score=92.06 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+.+.+.+.+++.|++++.+ +|.+++. + .|.+.+| ++.+|.||+|+|.+...+++.+|++
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 577888888899999999999 4888753 3 3455555 7999999999999887666665554
No 109
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.86 E-value=6.7e-09 Score=95.62 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=67.7
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEc-CCCccccc---hhhhhhhcc---------------------c--------
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVS-PRNHMVFT---PLLASTCVG---------------------T-------- 110 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie-~~~~~~~~---~~~~~~~~~---------------------~-------- 110 (351)
||+|||||+||+.||+.+++.|++|+|+. ..+.+... |.+.+...+ .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 22222111 111111100 0
Q ss_pred --cccccc------ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC
Q 018704 111 --LEFRSV------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (351)
Q Consensus 111 --~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 180 (351)
+..... ...-......+...+++.++..+|+.+..+.+.+.--...+|. .+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~--------~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGE--------EIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSE--------EEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCC--------EEecCEEEEeccc
Confidence 111111 0111222334556688999999999999887776544446776 9999999999998
No 110
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.85 E-value=7.1e-08 Score=90.33 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
..+...+.+.+.+.|++++.+ +|+++.. + .+.+.+| ++.+|.||+|+|.+...++..++
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~~ 212 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPLE 212 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhccccc
Confidence 455666667778889999998 4888754 2 3555566 79999999999988665555443
No 111
>PLN02697 lycopene epsilon cyclase
Probab=98.85 E-value=2.1e-08 Score=96.92 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=68.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc-----cchhhhhhh-----c----c----cccccc------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV-----FTPLLASTC-----V----G----TLEFRS------ 115 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~-----~~~~~~~~~-----~----~----~~~~~~------ 115 (351)
...+||+||||||||+++|..|++.|++|+|||+..... |...+.... . + ......
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 446899999999999999999999999999999753221 110000000 0 0 000000
Q ss_pred cc-c---chhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 116 VA-E---PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 116 ~~-~---~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
+. . .+.+.........++.++..+|+.+..+...+.+....++. ++.++.||+|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~--------~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGR--------VIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCc--------EEECCEEEECCCcCh
Confidence 00 0 00011111112346777888999988665554332224555 899999999999875
No 112
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.85 E-value=1.5e-08 Score=98.31 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=69.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC-ccccc---hhhhhhh----------cc-c---------cccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT---PLLASTC----------VG-T---------LEFRSV 116 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~-~~~~~---~~~~~~~----------~~-~---------~~~~~~ 116 (351)
..+||+|||||+||+.||..+++.|.+|+|||++. ...+. |...+.. .| . ..+..+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45899999999999999999999999999999873 22211 1111100 00 0 000000
Q ss_pred ---------c--------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 117 ---------A--------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 117 ---------~--------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
. .........+....++.++...|..+..+.+.+.-....+|. .+.++.||+|||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~--------~I~Ak~VIlATG 154 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGL--------EFRAKAVVLTTG 154 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCC--------EEECCEEEEeeC
Confidence 0 000111122334457788888898887666654422224565 899999999999
Q ss_pred CC
Q 018704 180 AE 181 (351)
Q Consensus 180 ~~ 181 (351)
..
T Consensus 155 TF 156 (618)
T PRK05192 155 TF 156 (618)
T ss_pred cc
Confidence 74
No 113
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.2e-08 Score=84.76 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=35.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~ 101 (351)
..||+||||||+||+||++|++.|++|+|||++..+..-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc
Confidence 4699999999999999999999999999999987764433
No 114
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.83 E-value=1.5e-09 Score=106.98 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
....||||||+|++||+||+.+++.|.+|+|+|+.....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g 45 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG 45 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 346899999999999999999999999999999987643
No 115
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.81 E-value=2e-08 Score=94.55 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=66.1
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh---hhh--------h-----cccc--cccc--------c-
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---AST--------C-----VGTL--EFRS--------V- 116 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~---~~~--------~-----~~~~--~~~~--------~- 116 (351)
||+|||||+||+++|+.|++.|++|+|||+++...+...+ ... + .+.. .... +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999987654321000 000 0 0000 0000 0
Q ss_pred c---cchhccchhhhcCCCeEEEEEEeeeEeCC-CCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 117 A---EPIARIQPAISREPGSYFFLSHCAGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 117 ~---~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
. ..+.+.........++.++..+|..+..+ ...+.+.. .++. ++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~-~~g~--------~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYC-AGGQ--------RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEe-CCCC--------EEEeCEEEECCCCch
Confidence 0 00001111111223566777788888766 44454433 3454 899999999999876
No 116
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.80 E-value=3.5e-08 Score=93.74 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 358999999999999999999999999999998754
No 117
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.80 E-value=1e-07 Score=90.43 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+|||||.+|+++|++|++.|.+|+|+|++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999864
No 118
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.79 E-value=2.4e-08 Score=95.09 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++||+||||||||++||+.|++.|++|+|+|+.+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 358999999999999999999999999999998754
No 119
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.79 E-value=6e-08 Score=87.75 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=74.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCCC-----cHHHHHHHHHHh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 294 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~~-----~~~~~~~~~~~l 294 (351)
+|+|||||++|+.+|..|.+.+ .+|+++++.+. .+.+ +.++...+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998876 88999997531 1222 256778888888
Q ss_pred hhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 295 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 295 ~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++.|++++..+|.+++.+ .+.+.+|.++.+|.||+|+|.+|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 899999998668888653 466677888999999999999887
No 120
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.78 E-value=1.3e-08 Score=85.04 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+||||||+||+||++|++.|++|+|||++....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPG 53 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-B
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 34899999999999999999999999999999987654
No 121
>PRK10015 oxidoreductase; Provisional
Probab=98.78 E-value=2.6e-08 Score=94.75 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+||||||||++||+.|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999987653
No 122
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.75 E-value=5.5e-08 Score=90.97 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=69.5
Q ss_pred cEEEECCchhHHHHHHhh--hccCceEEEEcCCCccccchhh------hh------hhcc-cc-------ccc------c
Q 018704 64 RVVVLGSGWAGCRLMKGI--DTSLYDVVCVSPRNHMVFTPLL------AS------TCVG-TL-------EFR------S 115 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L--~~~g~~v~vie~~~~~~~~~~~------~~------~~~~-~~-------~~~------~ 115 (351)
||+|||||+||+++|.+| ++.|.+|+|||+++...|.... .. .... +. ... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7899999999987655222110 00 0000 00 000 0
Q ss_pred c-ccchhccchh---hhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcC
Q 018704 116 V-AEPIARIQPA---ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (351)
Q Consensus 116 ~-~~~~~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~ 183 (351)
+ ...-..+... .....++.++...|..|+.....+.+.. ++|. .+.++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~-~~g~--------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVL-ADGR--------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEE-CCCC--------EEEeeEEEECCCcccc
Confidence 0 0000111111 1123467788889999998888555533 5666 8999999999996544
No 123
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.75 E-value=6.8e-08 Score=92.26 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+++||+||||||||+++|..|++.|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3566999999999999999999999999999999874
No 124
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.75 E-value=5.3e-08 Score=85.99 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||||||+||++|++.|++|+|+|++...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 4589999999999999999999999999999987654
No 125
>PRK06847 hypothetical protein; Provisional
Probab=98.74 E-value=4.8e-08 Score=91.48 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..||+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 57999999999999999999999999999998754
No 126
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.74 E-value=4.6e-08 Score=79.78 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=64.6
Q ss_pred EEECCchhHHHHHHhhhcc-----CceEEEEcCCCcc---ccchh-hhhhhcc----c---------cccccc-------
Q 018704 66 VVLGSGWAGCRLMKGIDTS-----LYDVVCVSPRNHM---VFTPL-LASTCVG----T---------LEFRSV------- 116 (351)
Q Consensus 66 vIIG~G~aGl~aA~~L~~~-----g~~v~vie~~~~~---~~~~~-~~~~~~~----~---------~~~~~~------- 116 (351)
+|||+|++|++++.+|.+. ..+|+|||+++.. .|.+. ......+ . ..+..|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999775 5689999986542 12111 0111111 0 011101
Q ss_pred ----------------ccchhccchhhhcC----CCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEE
Q 018704 117 ----------------AEPIARIQPAISRE----PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (351)
Q Consensus 117 ----------------~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lvi 176 (351)
..++.+....+... ..+.++..+|+.++.....+.+.. .+|. .+.||+||+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~-~~g~--------~~~~d~VvL 151 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVT-ADGQ--------SIRADAVVL 151 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEE-CCCC--------EEEeCEEEE
Confidence 11112222221111 135677889999998888776644 5566 899999999
Q ss_pred ecCC
Q 018704 177 ALGA 180 (351)
Q Consensus 177 AtG~ 180 (351)
|||.
T Consensus 152 a~Gh 155 (156)
T PF13454_consen 152 ATGH 155 (156)
T ss_pred CCCC
Confidence 9996
No 127
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.73 E-value=2.2e-07 Score=88.27 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce---EEecCCcEEeccEEEEecCCCCccccccCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
..+...+.+.+++.|++++.+ +|++++. ++ +.+. +.++.+|.||+|+|.+...++..+|
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 456677778888899999998 4888854 33 4444 4478999999999988766555444
No 128
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.73 E-value=2e-07 Score=88.36 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC---C---eEEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS---Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~---~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..+...+.+.+.+.|++++.+ +|++++. + .|.+.+| ++.+|.||+|+|-....+.+.+++
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~ 249 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGF 249 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCC
Confidence 455666778888999999999 5988852 2 2555566 699999999887665544444443
No 129
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.73 E-value=3.7e-08 Score=92.74 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=30.9
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
+||+||||||||+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
No 130
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.72 E-value=7.3e-08 Score=90.69 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=33.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+++||+||||||+|+++|+.|++.|++|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4579999999999999999999999999999987653
No 131
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.72 E-value=1.8e-07 Score=89.78 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhh-hcCcEEEcCe-EEEEeC--C-e--EE---ecCCc--EEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLS-KSGVRLVRGI-VKDVDS--Q-K--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~-~~gV~~~~~~-v~~v~~--~-~--v~---~~~g~--~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+.+.+.+.+. ..|++++.+. |.+++. + + +. ..+|+ ++++|.||+|.|.+...+++.+|++
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 456677777775 4599999994 888753 2 2 33 23442 6899999999999998888877765
No 132
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.72 E-value=1.9e-08 Score=98.82 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred eEEEECCChHHHHHHHH-------HHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEc
Q 018704 232 HCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 303 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~-------l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~ 303 (351)
..+++|++.++++++.. +.+++ .+|+++... ..+..+...+...+.+.+++.||++++
T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~ 227 (557)
T PRK07843 162 NMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLL 227 (557)
T ss_pred cccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEe
Confidence 78899999999988754 44444 444443332 233345667788888889999999999
Q ss_pred Ce-EEEEeC--C---eEEec-CCc--EEecc-EEEEecC-CCCc-ccccc
Q 018704 304 GI-VKDVDS--Q---KLILN-DGT--EVPYG-LLVWSTG-VGPS-TLVKS 341 (351)
Q Consensus 304 ~~-v~~v~~--~---~v~~~-~g~--~~~~D-~vi~a~G-~~p~-~~~~~ 341 (351)
+. ++++.. + +|+.. +|+ .+.++ .||+|+| +.+| ++++.
T Consensus 228 ~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 228 NTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred CCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 94 777753 2 34443 453 47785 6888775 6676 44443
No 133
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.71 E-value=9.1e-08 Score=84.25 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||||||+||+.|++.|++|+|+|++...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999998764
No 134
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.70 E-value=9.2e-08 Score=90.04 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 457999999999999999999999999999998754
No 135
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.69 E-value=2e-07 Score=89.85 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C-e--EEe---cCC--cEEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~-~--v~~---~~g--~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+...+.+.+++.|++++.+ +|++++. + . +.+ .+| .++.+|.||+|+|.+...+++.+|++
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 567788888888899999999 4988864 2 2 332 223 25899999999999888887777765
No 136
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.67 E-value=3.2e-07 Score=86.60 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=47.4
Q ss_pred cEEEEEeCCCCCCC--CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCC
Q 018704 268 IHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 268 ~~v~~~~~~~~l~~--~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
.+++....+.+.|. ....+.+.+.+.+++.|++++.+. |.++.. + .+.+ ++.++.+|.||+|+|...
T Consensus 87 v~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 87 LELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 55555544443332 346778888889999999999994 888754 2 2333 566799999999999743
No 137
>PRK06834 hypothetical protein; Provisional
Probab=98.65 E-value=1.3e-07 Score=91.55 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 48999999999999999999999999999997753
No 138
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.64 E-value=6.5e-07 Score=86.32 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc----CceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~----g~~v~vie~~~~~~ 98 (351)
.+++|+|||||.|||+||.+|.+. |.+|+|+|+.+...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 357999999999999999999984 78999999988753
No 139
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.64 E-value=1e-06 Score=84.82 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---eEEecCCcEEeccEEEEecCCCCcccc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPSTLV 339 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~ 339 (351)
..+...+.+.+++.|++++.++ |.+++.+ .|.+.+| ++.||.||+|+|.....++
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~ 241 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMASHF 241 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEcccccccccC
Confidence 4667888888899999999995 8888653 2555556 6999999999997654333
No 140
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.63 E-value=6.9e-07 Score=79.03 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=58.2
Q ss_pred HHHHHhhhcC-CC-CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEe----C---CeEEecCCcEE
Q 018704 254 MRDVRQRYSH-VK-DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD----S---QKLILNDGTEV 322 (351)
Q Consensus 254 ~~~~~~~~~~-~~-~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~----~---~~v~~~~g~~~ 322 (351)
.++++++||. .+ +...+-++... .+. ......+.++..+++.|+.++.|+ |+.+. . ..|.+.+|..+
T Consensus 122 seEvrk~fP~~~~l~d~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y 199 (399)
T KOG2820|consen 122 SEEVRKRFPSNIPLPDGWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY 199 (399)
T ss_pred HHHHHHhCCCCccCCcchhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCee
Confidence 4577788883 22 22222222221 111 234567788899999999999995 66554 2 36788899999
Q ss_pred eccEEEEecCCCCccccc
Q 018704 323 PYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 323 ~~D~vi~a~G~~p~~~~~ 340 (351)
.++.+|+++|.+-+.++.
T Consensus 200 ~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 200 HAKKIIFTVGAWINKLLP 217 (399)
T ss_pred ecceEEEEecHHHHhhcC
Confidence 999999999999886665
No 141
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.62 E-value=1.2e-07 Score=89.78 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~ 96 (351)
++||+||||||+||++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 379999999999999999999985 99999998754
No 142
>PLN02661 Putative thiazole synthesis
Probab=98.62 E-value=3.2e-07 Score=83.37 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~ 97 (351)
....||+|||||++|++||+.|++. |++|+|||+....
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3467999999999999999999975 8999999987654
No 143
>PRK09126 hypothetical protein; Provisional
Probab=98.61 E-value=2e-07 Score=87.78 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+++||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 358999999999999999999999999999998764
No 144
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.61 E-value=2.1e-06 Score=80.21 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHhhhcCcEEEcC-eEEEEe--CC---eEEecCC--cEEeccEEEEecCCC-CccccccC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILNDG--TEVPYGLLVWSTGVG-PSTLVKSL 342 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~-~v~~v~--~~---~v~~~~g--~~~~~D~vi~a~G~~-p~~~~~~~ 342 (351)
+.++.+.+.+.+++.|++++.+ +|.++. ++ .+.+.++ .++++|.+|+|+|.+ ...+++.+
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 3678888999999999999999 588865 33 2444554 479999999999999 66666554
No 145
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.60 E-value=9.9e-08 Score=81.87 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=30.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+|+|||+|++||+||+.|+..|+.|+|||+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 469999999999999999999999999999653
No 146
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.59 E-value=2.8e-07 Score=90.38 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=54.9
Q ss_pred HHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C---eEEec---CC--cEEe
Q 018704 255 RDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILN---DG--TEVP 323 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~---~v~~~---~g--~~~~ 323 (351)
+++.+.+|.++++..=.+...+... -+..+...+.+.+.+.|++++++ +|+++.. + +|.+. +| .++.
T Consensus 122 ~e~~~~eP~l~~~~~ga~~~~dg~v--dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~ 199 (546)
T PRK11101 122 QQALILEPAVNPALIGAVKVPDGTV--DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIH 199 (546)
T ss_pred HHHHHhCCCcCccceEEEEecCcEE--CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEE
Confidence 3445556665544333333333211 23566666777788899999999 4888753 3 34442 23 3689
Q ss_pred ccEEEEecCCCCccccccCC
Q 018704 324 YGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 324 ~D~vi~a~G~~p~~~~~~~g 343 (351)
+|.||.|+|.+...+.+..+
T Consensus 200 A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 200 APVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred CCEEEECCChhHHHHHHhcC
Confidence 99999999998876655444
No 147
>PRK06184 hypothetical protein; Provisional
Probab=98.59 E-value=2e-07 Score=90.74 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47999999999999999999999999999998754
No 148
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.58 E-value=3e-07 Score=87.03 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3799999999999999999999999999999875
No 149
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.58 E-value=3e-07 Score=86.71 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc---CceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~---g~~v~vie~~ 94 (351)
..+||+||||||+|+++|+.|++. |++|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 347999999999999999999998 9999999984
No 150
>PRK07236 hypothetical protein; Provisional
Probab=98.57 E-value=2.9e-07 Score=86.64 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+..+|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 458999999999999999999999999999998764
No 151
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.56 E-value=7.2e-07 Score=89.72 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCccccc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~~~~~ 340 (351)
..+...+.+.+.+ |++++.+. |+++.. ++ |.+.+|..+.+|.||+|+|.....++.
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~ 468 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQ 468 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccc
Confidence 5677888888888 99999984 888753 33 455667667899999999988765444
No 152
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.56 E-value=4.2e-07 Score=85.44 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3799999999999999999999999999999764
No 153
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.56 E-value=2.8e-07 Score=86.95 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+||||||||++||+.|++.|++|+|+|++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998743
No 154
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.55 E-value=3e-07 Score=86.30 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred cEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
||+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 7999999999999999999999 99999998754
No 155
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.55 E-value=3.3e-07 Score=86.49 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++.||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 3479999999999999999999999999999987643
No 156
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.54 E-value=5.4e-07 Score=84.88 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 45899999999999999999999999999999875
No 157
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.54 E-value=5.3e-07 Score=85.12 Aligned_cols=94 Identities=18% Similarity=0.306 Sum_probs=69.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----CCCcHHHH-----H----HHHHHhhhc
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDDRLR-----H----YATTQLSKS 297 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----~~~~~~~~-----~----~~~~~l~~~ 297 (351)
++|+|||||+.|+.+|..|.+.+ ...+|+++.+.... +.+...+. + .-.+.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~------------~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQG------------FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQEN 71 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhC------------CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHC
Confidence 48999999999999999998754 23689999876322 12222110 0 012335667
Q ss_pred CcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+|+++.++ |..++. ..+.+.+|+++.+|.+|+|||.+|.
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 99999995 888865 4678888999999999999999986
No 158
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.54 E-value=9.8e-07 Score=85.22 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhcC-cEEEcC-eEEEEeC--C---eEEec---CCc--EEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q---KLILN---DGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~~~~~-~v~~v~~--~---~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+.+.+.+.+++.| ++++.+ +|++++. + .+.+. +|+ ++.+|.||+|.|.+...+++.+|++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 466777888888876 899999 4888763 3 24433 353 5899999999999888777777665
No 159
>PRK08244 hypothetical protein; Provisional
Probab=98.53 E-value=3.3e-07 Score=89.08 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999997654
No 160
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.53 E-value=9.3e-08 Score=66.07 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=28.6
Q ss_pred EECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 67 IIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
|||||++||++|+.|++.|++|+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999998875
No 161
>PRK06753 hypothetical protein; Provisional
Probab=98.53 E-value=4.4e-07 Score=84.92 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+|+|||||++||++|..|++.|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999987653
No 162
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=6.7e-07 Score=85.59 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+|+|||||++|+.+|..|++.|.+|+++++.+.+.-. ....+...........++.++. ..|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------~~~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR---------------EEPSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC---------------CCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 468999999999999999999999999999997763200 0111112222223344677665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.++..+.+.. ++. ++.||.||+|+|..|....
T Consensus 222 ~~i~~~~~~v~v~~--~g~--------~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 222 TEVKNDGDQVLVVT--EDE--------TYRFDALLYATGRKPNTEP 257 (438)
T ss_pred EEEEecCCEEEEEE--CCe--------EEEcCEEEEeeCCCCCccc
Confidence 88887666665532 344 7999999999999988653
No 163
>PRK11445 putative oxidoreductase; Provisional
Probab=98.51 E-value=6.3e-07 Score=83.20 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=31.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 7999999999999999999999 99999998764
No 164
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.50 E-value=6.4e-07 Score=84.85 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.+||+||||||+||++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999985
No 165
>PRK07045 putative monooxygenase; Reviewed
Probab=98.49 E-value=7.1e-07 Score=84.03 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999977653
No 166
>PRK06185 hypothetical protein; Provisional
Probab=98.49 E-value=5.8e-07 Score=85.17 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 558999999999999999999999999999998753
No 167
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.49 E-value=5.4e-07 Score=84.78 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.+||+||||||+||++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999997
No 168
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.48 E-value=3.4e-06 Score=83.91 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHhhhcCCCCc-----cEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC----C---eEEe---c
Q 018704 254 MRDVRQRYSHVKDY-----IHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS----Q---KLIL---N 317 (351)
Q Consensus 254 ~~~~~~~~~~~~~~-----~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~----~---~v~~---~ 317 (351)
..++.+.+|.+.+. ..=.++..+... -+..+...+.+.+++.|++++.+ +|.++.. + +|.+ .
T Consensus 199 ~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~v--dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~ 276 (627)
T PLN02464 199 AKESLELFPTLAKKGKDGSLKGTVVYYDGQM--NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL 276 (627)
T ss_pred HHHHHHhCCCCCccccccceeEEEEecCcEE--cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC
Confidence 44566677776644 332333333222 24577778888899999999999 5888742 2 2343 2
Q ss_pred CCc--EEeccEEEEecCCCCccccccCC
Q 018704 318 DGT--EVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 318 ~g~--~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
+|+ ++.+|.||+|+|.+...+.+.++
T Consensus 277 tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 277 TGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred CCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 344 57999999999988776665553
No 169
>PRK06126 hypothetical protein; Provisional
Probab=98.48 E-value=9.8e-07 Score=86.88 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...++|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3458999999999999999999999999999997653
No 170
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.48 E-value=7.1e-07 Score=83.27 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=70.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CCCc---------HHHHHHHHHHhhhcCc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 299 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 299 (351)
+|+|||||..|+.+|..+.+.. .++.+|++++++... +.++ .++...+.+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 4899999999999988875321 234899999987421 2111 1233334556677899
Q ss_pred EEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 300 ~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.++|++++. ..|.+.+|+++++|.+|+|||..|+
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 999998988875 5788899989999999999999887
No 171
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=9.1e-07 Score=85.15 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=70.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.. . ....+.+.........++.++. ..+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----~----------~d~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----G----------EDEDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----c----------ccHHHHHHHHHHHHHCCCEEEECCEE
Confidence 46899999999999999999999999999998775321 0 0111222222223344777665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+...+.+.. +++ ..++.||.|++|+|..|+...
T Consensus 235 ~~i~~~~~~v~~~~--~g~------~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 235 KGLNSYKKQALFEY--EGS------IQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EEEEEcCCEEEEEE--CCc------eEEEEeCEEEEecCCccCCCC
Confidence 88887666665542 232 126899999999999887653
No 172
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.47 E-value=1.2e-06 Score=83.11 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=73.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
.+.+++|||||+.|+..|..+++.|.+|||+|+.+++.- .....+.+.........++.++.. +
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp---------------~~D~ei~~~~~~~l~~~gv~i~~~~~ 236 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP---------------GEDPEISKELTKQLEKGGVKILLNTK 236 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---------------cCCHHHHHHHHHHHHhCCeEEEccce
Confidence 347899999999999999999999999999999887420 112333333333344456766654 6
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
+..+....+.+.++. .++. ...+.+|.|++|+|-.|+..++
T Consensus 237 v~~~~~~~~~v~v~~-~~g~------~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 237 VTAVEKKDDGVLVTL-EDGE------GGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred EEEEEecCCeEEEEE-ecCC------CCEEEeeEEEEccCCccCCCCC
Confidence 777766555444433 2332 0168899999999999988753
No 173
>PRK07588 hypothetical protein; Provisional
Probab=98.47 E-value=7e-07 Score=84.17 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=32.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 47999999999999999999999999999987643
No 174
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.47 E-value=1.1e-06 Score=85.41 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=31.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+||+|||||+||+.+|..+++.|.+|+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 589999999999999999999999999999864
No 175
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.46 E-value=8.2e-07 Score=84.57 Aligned_cols=95 Identities=25% Similarity=0.368 Sum_probs=69.7
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CCC--------c-HHHHHHHHHHhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF--------D-DRLRHYATTQLS 295 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---~~~--------~-~~~~~~~~~~l~ 295 (351)
...++|+|||||..|+.+|..|.+ .+.+|++|++++.. +.+ + ..+...+.+.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~--------------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 73 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP--------------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALA 73 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc--------------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhc
Confidence 344699999999999999877642 23789999986421 211 1 223333455666
Q ss_pred hcCcEEEcCeEEEEeC--CeEEe----------cCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGIVKDVDS--QKLIL----------NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~--~~v~~----------~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+++++.++|++++. +.|.+ .+|.++++|.+|+|||..|.
T Consensus 74 ~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 74 KLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred cCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 7789999999998875 46777 46778999999999999876
No 176
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.46 E-value=2.8e-07 Score=91.03 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...+||+|||+|.+|+++|..+++.|.+|+|||+.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34689999999999999999999999999999997654
No 177
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.46 E-value=1.3e-07 Score=89.94 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=28.5
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
||||||||+||++||+.+++.|.+|+|||+.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence 7999999999999999999999999999998765
No 178
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.45 E-value=1.1e-06 Score=84.67 Aligned_cols=102 Identities=12% Similarity=0.204 Sum_probs=69.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.- . +...+...........++.++. ..|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--~-------------~~~~~~~~~~~~l~~~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--G-------------EDAEVSKVVAKALKKKGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--C-------------CCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 46899999999999999999999999999999775310 0 0011111111222334676655 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+.+.+.+... ++. ...+.+|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~v~~~-~g~------~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 235 TAVEKNDDQVVYENK-GGE------TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCCEEEEEEe-CCc------EEEEEeCEEEEecCCcccCC
Confidence 888876666655432 331 12799999999999998766
No 179
>PRK05868 hypothetical protein; Validated
Probab=98.45 E-value=1.5e-06 Score=81.39 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++||++|..|++.|++|+|||+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 58999999999999999999999999999977543
No 180
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.45 E-value=8.3e-07 Score=83.33 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=31.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999998864
No 181
>PRK07190 hypothetical protein; Provisional
Probab=98.44 E-value=1.1e-06 Score=85.08 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=33.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+||||||+||++|..|++.|.+|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 347999999999999999999999999999998754
No 182
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.44 E-value=1.5e-06 Score=85.35 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3458999999999999999999999999999998754
No 183
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.43 E-value=1.4e-06 Score=82.07 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.||+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999998864
No 184
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.43 E-value=1.5e-06 Score=83.43 Aligned_cols=93 Identities=22% Similarity=0.436 Sum_probs=67.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------CCC-----c--HHHHHHHHHHhhhc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------SSF-----D--DRLRHYATTQLSKS 297 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l-------~~~-----~--~~~~~~~~~~l~~~ 297 (351)
+|+|||||+.|+.+|..|.+++ ++.+|+++++++.+ +.+ + .++.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998754 23689999997521 111 1 11222334557778
Q ss_pred CcEEEcC-eEEEEeC--CeEEecC---CcEEe--ccEEEEecCCCCc
Q 018704 298 GVRLVRG-IVKDVDS--QKLILND---GTEVP--YGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~-~v~~v~~--~~v~~~~---g~~~~--~D~vi~a~G~~p~ 336 (351)
||+++.+ +|.+++. +.+.+.+ |..++ +|.+|+|||.+|.
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 9999887 5888864 4677654 56666 9999999999987
No 185
>PLN02985 squalene monooxygenase
Probab=98.42 E-value=2e-06 Score=83.64 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3556899999999999999999999999999999764
No 186
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.42 E-value=1.6e-06 Score=81.28 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=69.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. . +...............++.++. ..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------~-----~~~~~~~~l~~~l~~~gV~i~~~~~v 206 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------L-----MPPEVSSRLQHRLTEMGVHLLLKSQL 206 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------h-----CCHHHHHHHHHHHHhCCCEEEECCeE
Confidence 368999999999999999999999999999997763210 0 0011111111223334677654 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..++.+...+.+.. .+++ ++.+|.||+|+|..|+.
T Consensus 207 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 207 QGLEKTDSGIRATL-DSGR--------SIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEEEccCCEEEEEE-cCCc--------EEECCEEEECcCCCcch
Confidence 88887766655543 4565 89999999999998764
No 187
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.42 E-value=1.6e-06 Score=83.51 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=31.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+||||||||.|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999864
No 188
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.42 E-value=1.7e-06 Score=83.68 Aligned_cols=103 Identities=15% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+. + . ....+...........++.++.. .|
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-----~-------~---~~~~~~~~l~~~l~~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-----P-------T---EDAELSKEVARLLKKLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-----C-------c---CCHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 4699999999999999999999999999999877531 0 0 01111111111233446776654 67
Q ss_pred eeEeC--CCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++. +.+...+ ...+++ ...+.||.||+|+|..|....
T Consensus 245 ~~i~~~~~~~~~~~-~~~~g~------~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 245 LGLTLKKDGGVLIV-AEHNGE------EKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEEEEecCCCEEEE-EEeCCc------eEEEEeCEEEEeeCCccCCCC
Confidence 78864 3333322 222332 127999999999999987654
No 189
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.42 E-value=1.7e-06 Score=85.11 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998764
No 190
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=1.6e-06 Score=83.60 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=70.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ....+...........++.++.. .|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~-------------~~~~~~~~l~~~l~~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP--G-------------EDKEISKLAERALKKRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC--c-------------CCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 36899999999999999999999999999999776320 0 01111122222233446776654 78
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+.+.+...+++. ...+.+|.||+|+|..|....
T Consensus 237 ~~i~~~~~~v~v~~~~gg~------~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDGGK------EETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEeCCEEEEEEEeCCe------eEEEEeCEEEEeeCCccCCCC
Confidence 8888766655554322221 127899999999999987654
No 191
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.41 E-value=1.3e-06 Score=83.03 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.3
Q ss_pred CcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~ 97 (351)
.+|+|||||++||++|..|++.| ++|+|+|+.+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999998 599999987653
No 192
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.41 E-value=1.7e-06 Score=76.70 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcCCC-CccEEEEEeCCCCCCCCc-HHHHHHHHHHhhhcCcEEEcCeEEEEeCC-----------------
Q 018704 252 FIMRDVRQRYSHVK-DYIHVTLIEANEILSSFD-DRLRHYATTQLSKSGVRLVRGIVKDVDSQ----------------- 312 (351)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~-~~~~~~~~~~l~~~gV~~~~~~v~~v~~~----------------- 312 (351)
+.+++++.+||-+. +++....+--.. -..++ ..+...+.+.....|+.+..|+|++++-.
T Consensus 210 ls~d~Lt~rfPwlntegVaLa~lG~e~-EGwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~ 288 (509)
T KOG2853|consen 210 LSPDELTKRFPWLNTEGVALASLGVEK-EGWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLR 288 (509)
T ss_pred cCHHHHhhhCCcccccceeeeeccccc-ccccCHHHHHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhh
Confidence 34677888888754 333333222211 12233 46677788888889999999998887521
Q ss_pred -----e--EEecCC--cEEeccEEEEecCCCCccccccCCC
Q 018704 313 -----K--LILNDG--TEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 313 -----~--v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
+ |.+.|+ +.++|+.+|.|.|.+....++..|+
T Consensus 289 ~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAgI 329 (509)
T KOG2853|consen 289 AQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAGI 329 (509)
T ss_pred hcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhcc
Confidence 1 222333 4588999999999887755544433
No 193
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.38 E-value=1.1e-06 Score=90.78 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=72.3
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--------CCC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------l~~--~~~~~~~~~~~~l~~~ 297 (351)
.++|+|+|||||+.|+.+|..|++.| .+|+++++... +|. ++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 45789999999999999999999887 89999998631 122 3566777777788899
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC-Cc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~-p~ 336 (351)
||+++.|...+ ..+.+++.....+|.||+|||.. |.
T Consensus 370 Gv~f~~n~~vG---~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 370 GGRFVKNFVVG---KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred cCeEEEeEEec---cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 99999986432 34666666667899999999984 54
No 194
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.38 E-value=1.3e-05 Score=73.91 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCcccccc----CCCCCC
Q 018704 278 ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKS----LDLPKS 347 (351)
Q Consensus 278 ~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~----~gl~~~ 347 (351)
+-...-+.+.+.+.+.+++.|+++++++ |.+++- + .+.+++|.++++|.||+|+|+..++|+++ +|+...
T Consensus 167 iGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 167 IGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMR 246 (486)
T ss_pred cCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccc
Confidence 3333446888899999999999999995 977753 2 67889999999999999999999866654 466543
No 195
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.38 E-value=1.3e-06 Score=62.54 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=50.8
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEeee
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAG 142 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 142 (351)
+|+|||||+.|+.+|..|++.|.+|+|+++.+.+. + .+...............++.++. ..+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~-------------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--P-------------GFDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--T-------------TSSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--h-------------hcCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 58999999999999999999999999999988743 1 11122222222233344777665 47888
Q ss_pred EeCCCCEEE
Q 018704 143 IDTDNHVVH 151 (351)
Q Consensus 143 i~~~~~~v~ 151 (351)
++.++..+.
T Consensus 66 i~~~~~~~~ 74 (80)
T PF00070_consen 66 IEKDGDGVE 74 (80)
T ss_dssp EEEETTSEE
T ss_pred EEEeCCEEE
Confidence 877665543
No 196
>PRK07846 mycothione reductase; Reviewed
Probab=98.37 E-value=2.6e-06 Score=81.77 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. + . ....+.+....+.. .++.++ ...+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-----~-----~-----~d~~~~~~l~~l~~-~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-----R-----H-----LDDDISERFTELAS-KRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-----c-----c-----cCHHHHHHHHHHHh-cCeEEEeCCEE
Confidence 4689999999999999999999999999999977532 0 0 01111111111222 245554 4578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
+.++.+.+.+.+.. .+++ .+.+|.|++|+|..|+...+
T Consensus 230 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 230 VGVSQDGSGVTLRL-DDGS--------TVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred EEEEEcCCEEEEEE-CCCc--------EeecCEEEEEECCccCcccc
Confidence 88876655554433 3455 89999999999999887643
No 197
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.37 E-value=1.9e-06 Score=83.01 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=69.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+... ....+...........++.++.. +|
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---------------~d~~~~~~l~~~l~~~gV~i~~~~~V 230 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR---------------EEPEISAAVEEALAEEGIEVVTSAQV 230 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc---------------cCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 368999999999999999999999999999987653210 01111122222233456776654 68
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+...+.+....++. ..++.+|.||+|+|..|....
T Consensus 231 ~~i~~~~~~~~v~~~~~~~------~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 231 KAVSVRGGGKIITVEKPGG------QGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEEcCCEEEEEEEeCCC------ceEEEeCEEEEeECCCcCCCC
Confidence 8887655444333211111 127999999999999888763
No 198
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.35 E-value=3.7e-06 Score=80.67 Aligned_cols=91 Identities=24% Similarity=0.361 Sum_probs=69.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---------C---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------S--------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~---------~--------------------- 281 (351)
.|+|||||+.|+.+|..+++.| .+|.+++++.+-. .
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHG--------------AKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGW 69 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCc
Confidence 7999999999999999999887 8999999742110 0
Q ss_pred ------Cc------------HHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEe-cCCcEEeccEEEEecCCCCc
Q 018704 282 ------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 ------~~------------~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~-~~g~~~~~D~vi~a~G~~p~ 336 (351)
++ ..+.+.+++.+++.||+++.+++..++.+.+.. .+|+++++|.||+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 70 TVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCC
Confidence 00 012234445577789999999888887766655 46778999999999999987
No 199
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.35 E-value=2.2e-06 Score=80.03 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=30.3
Q ss_pred cEEEECCchhHHHHHHhhhcc--CceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~ 95 (351)
||+|||||+||+++|..|++. |++|+|+|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 799999999999999999986 99999999976
No 200
>PRK06370 mercuric reductase; Validated
Probab=98.34 E-value=3.3e-06 Score=81.44 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. ....+.+.........++.++. ..|
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~---------------~~~~~~~~l~~~l~~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR---------------EDEDVAAAVREILEREGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc---------------cCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 479999999999999999999999999999997763210 0111111222223345777665 478
Q ss_pred eeEeCCCCEEEEEee--cCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~--~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.++..+.+... .++. .+.+|.||+|+|..|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~~~~~--------~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 236 IRVERDGDGIAVGLDCNGGAP--------EITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEcCCEEEEEEEeCCCce--------EEEeCEEEECcCCCcCCC
Confidence 888776554433221 1223 799999999999998865
No 201
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.33 E-value=7.8e-06 Score=78.33 Aligned_cols=53 Identities=19% Similarity=0.431 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhcCcEEEcCeEEEEe--CC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
....+.+.+...+.||+++.++|.++. ++ .|++++|+++++|.||=|+|+...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 366777888888999999999876663 22 577889999999999999998655
No 202
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=5.4e-07 Score=86.57 Aligned_cols=39 Identities=26% Similarity=0.513 Sum_probs=35.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+++|+|||||+|||+||++|.+.|++|+|+|.+++..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 456899999999999999999999999999999888754
No 203
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.32 E-value=3.4e-06 Score=81.31 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . +...+...........++.++. ..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------~-----~d~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS----------F-----LDDEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC----------c-----CCHHHHHHHHHHHHHcCCEEEECCEE
Confidence 47899999999999999999999999999998775310 0 0111111111122334676654 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+.++.++..+.++. .++. ++.+|.||+|+|..|+..
T Consensus 240 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 240 EKVEGGDDGVIVHL-KSGK--------KIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEeCCeEEEEE-CCCC--------EEEeCEEEEeecCCcccc
Confidence 88876555555542 4455 799999999999998765
No 204
>PRK06116 glutathione reductase; Validated
Probab=98.31 E-value=3.7e-06 Score=80.75 Aligned_cols=90 Identities=28% Similarity=0.472 Sum_probs=68.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CC---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~--------------------- 281 (351)
.|+|||||+.|+.+|..+++.| .+|.++++..+. |.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G--------------~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g 71 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYG--------------AKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYG 71 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcC
Confidence 7999999999999999999887 899999985320 00
Q ss_pred -------Cc-HH-----------HHHHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 282 -------FD-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 -------~~-~~-----------~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++ .. +.+.+.+.+++.||+++.++++.++...|.+ +|+++.+|.||+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 72 FDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPS 144 (450)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 00 00 1111233456679999999887787788888 7778999999999999987
No 205
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.31 E-value=5.5e-06 Score=80.86 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=74.0
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CCC------------CCCcHHHHHHHHHH
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL------------SSFDDRLRHYATTQ 293 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~l------------~~~~~~~~~~~~~~ 293 (351)
...+|+|||||+.|+.+|..+++.| .+|+++... .+. ....+++.+.+.+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEH 276 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHH
Confidence 3469999999999999999999877 889888641 111 11335677788888
Q ss_pred hhhcCcEEEcC-eEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~-~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.||+++.+ +|.+++.+ .+.+++|..+.+|.+|+|+|..|.
T Consensus 277 l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 277 IKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 88999999998 48888543 456678888999999999998876
No 206
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.30 E-value=1.5e-06 Score=81.60 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+|||||.+|+.+|..|++.|++|+|||+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3799999999999999999999999999997665
No 207
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.30 E-value=3.6e-06 Score=78.15 Aligned_cols=94 Identities=28% Similarity=0.452 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC---CCC--------C-cHHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LSS--------F-DDRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---l~~--------~-~~~~~~~~~~~l~~~g 298 (351)
++|+|||||..|+..+..|.+.- ++.+++++++... .|. + ..++...+.+.++..+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~------------~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~ 71 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL------------PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG 71 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC------------CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC
Confidence 49999999999999998887531 1378999999742 111 1 2344455666677555
Q ss_pred -cEEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 -VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 -V~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++|++|+. .+|.++++.++++|.+|+|+|..++
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETN 112 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCC
Confidence 9999999999875 5899999888999999999999988
No 208
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.29 E-value=4.1e-06 Score=79.90 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=67.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+++++.+..... .+...+...........++.++. ..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--------------~~~~~~~~~~~~~l~~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--------------LFDEEMNQIVEEELKKHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--------------ccCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 368999999999999999999999999999987653100 00111111112223344677664 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+...+.+ .+++ ++.||.||+|+|..|...
T Consensus 203 ~~i~~~~~~v~~---~~g~--------~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 203 DSIEGEERVKVF---TSGG--------VYQADMVILATGIKPNSE 236 (427)
T ss_pred EEEecCCCEEEE---cCCC--------EEEeCEEEECCCccCCHH
Confidence 888876553222 3455 899999999999987754
No 209
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=9.7e-07 Score=83.02 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC----ccccchhhhhhhcccc--------------------cc----
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN----HMVFTPLLASTCVGTL--------------------EF---- 113 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~----~~~~~~~~~~~~~~~~--------------------~~---- 113 (351)
.+||+|||||.||+.||...+|.|.++.++--+. .++..|.+.+...|.. .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 4899999999999999999999999998886442 2223343433333311 00
Q ss_pred -------c------ccccchhccchhhhcCCCeEEEEEEeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 114 -------R------SVAEPIARIQPAISREPGSYFFLSHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 114 -------~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
. +-..+-......+....+...+.+.|+.+..++. .+.-.....|. .+.++.||++||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~--------~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP--------EFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC--------eeecCEEEEeec
Confidence 0 0011112222335556678888888888877544 34433446777 999999999999
Q ss_pred CC
Q 018704 180 AE 181 (351)
Q Consensus 180 ~~ 181 (351)
..
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 64
No 210
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.27 E-value=5.9e-06 Score=79.71 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+... + .. ...+...........++.++. ..|
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~-------~~---d~~~~~~l~~~l~~~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-----P-------NE---DAEVSKEIAKQYKKLGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-----C-------cc---CHHHHHHHHHHHHHCCCEEEECCEE
Confidence 4689999999999999999999999999999866531 0 00 111111212223344777665 478
Q ss_pred eeEeCCCCEEEEEee-cCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+.++.+...+.+... .++. ..++.+|.||+|+|..|+..
T Consensus 237 ~~i~~~~~~~~v~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKDGK------AQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEeCCeEEEEEEecCCC------eEEEEeCEEEECcCcccCCC
Confidence 888766554443221 2332 13799999999999988765
No 211
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.27 E-value=7.9e-06 Score=79.83 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=73.6
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CC--------CC----CCcHHHHHHHHHHhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATTQLS 295 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~--------l~----~~~~~~~~~~~~~l~ 295 (351)
.+|+|||||+.|+.+|..+++.| .+|+++... .+ ++ .....+.+.+.++++
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 277 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVK 277 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999887 888888652 11 11 123577788888999
Q ss_pred hcCcEEEcC-eEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~-~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|++++.+ +|.+++.. .+.+.+|.++.+|.||+|+|..|+
T Consensus 278 ~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 278 EYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999998 48888642 456678888999999999998776
No 212
>PRK14694 putative mercuric reductase; Provisional
Probab=98.27 E-value=5.6e-06 Score=79.94 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=68.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++++...+. . ....+...........++.++. ..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~------~----------~~~~~~~~l~~~l~~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS------Q----------EDPAVGEAIEAAFRREGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC------C----------CCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999999999998743211 0 0111122222223345777766 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.++..+.+.. ++. ++.+|.||+|+|..|+...
T Consensus 242 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 242 SEVDYNGREFILET--NAG--------TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EEEEEcCCEEEEEE--CCC--------EEEeCEEEEccCCCCCcCC
Confidence 88887666555432 333 7999999999999987753
No 213
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=7e-06 Score=79.40 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+... . ...+...........++.++. ..|
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~-----d~~~~~~~~~~l~~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------A-----DEQVAKEAAKAFTKQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc----------C-----CHHHHHHHHHHHHHcCcEEEeCcEE
Confidence 469999999999999999999999999999997753210 0 011111111122234677665 478
Q ss_pred eeEeCCCCEEEEEeec-CccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~-~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+...+.+...+ +++ ...+.+|.|++|+|..|....
T Consensus 248 ~~i~~~~~~v~v~~~~~~g~------~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDADGE------AQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEEEcCCEEEEEEEeCCCc------eeEEEcCEEEEccCCccCCCC
Confidence 8888766555443212 121 137999999999999988763
No 214
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.25 E-value=7.3e-06 Score=78.70 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=68.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
..+++|||||+.|+.+|..|++.|.+|++|++.+.+.- ..+ ..+...+. .+.. .++.++ ...|
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~----------~~d-~~~~~~l~----~~~~-~gI~i~~~~~V 232 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR----------HLD-EDISDRFT----EIAK-KKWDIRLGRNV 232 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc----------ccC-HHHHHHHH----HHHh-cCCEEEeCCEE
Confidence 46899999999999999999999999999998765310 000 01111111 1122 245555 4578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+...+.+.. .+++ .+.+|.|++|+|..|+...
T Consensus 233 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 233 TAVEQDGDGVTLTL-DDGS--------TVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEEEEcCCeEEEEE-cCCC--------EEEcCEEEEeeccCcCCCC
Confidence 88876655555533 3455 7999999999999987753
No 215
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.25 E-value=7.6e-07 Score=82.28 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=30.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+||||||+||++|..|++.|++|+|||+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 68999999999999999999999999999987654
No 216
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.24 E-value=7.4e-06 Score=77.47 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=31.9
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999997764
No 217
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.24 E-value=7.3e-06 Score=83.81 Aligned_cols=93 Identities=23% Similarity=0.391 Sum_probs=69.1
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----CCc---------HHHHHHHHHHhhhcCc
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD---------DRLRHYATTQLSKSGV 299 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----~~~---------~~~~~~~~~~l~~~gV 299 (351)
|+|||||+.|+.+|..|.++. ..+.+|+++.+.+.++ .++ .++.....+.+++.||
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~-----------~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN-----------RHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC-----------CCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCC
Confidence 589999999999999887643 2347999999864321 111 1111122345677899
Q ss_pred EEEcC-eEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 300 RLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 300 ~~~~~-~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.+ +|+.++. ..|.+.+|+++++|.||+|||..|.
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 99999 4888875 4688889989999999999999887
No 218
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.23 E-value=1.1e-05 Score=82.64 Aligned_cols=96 Identities=19% Similarity=0.307 Sum_probs=69.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---C-Cc--------HHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---S-FD--------DRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~---~-~~--------~~~~~~~~~~l~~~g 298 (351)
++|+|||+|+.|+.+|..|.+... ..+.+|+++.+.+.++ . +. ..+.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 389999999999999998875420 1347999998864321 0 11 111112234566789
Q ss_pred cEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++ |..++. ..|.+.+|+++++|.+|+|||.+|.
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC
Confidence 9999995 888865 3567788889999999999999887
No 219
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.23 E-value=5.8e-06 Score=84.93 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=67.1
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
.++|+|+|||||++|+.+|..|++.| .+|+++++.+.+ |. ++.+......+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 56789999999999999999999877 899999986321 22 2344555555677888
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.+. + . +.+.+.+...+|.||+|||.++.
T Consensus 603 GVe~~~gt~V-d-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSP-D-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCcee-E-----EEhhhheeccCCEEEECcCCCCC
Confidence 99999995 4 2 33344455669999999998754
No 220
>PRK06996 hypothetical protein; Provisional
Probab=98.22 E-value=5.5e-06 Score=78.30 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccC----ceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSL----YDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g----~~v~vie~~~ 95 (351)
.+.+||+||||||+|+++|..|++.| ++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34589999999999999999999986 5799999864
No 221
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.22 E-value=6.5e-06 Score=79.00 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=67.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+|+|||||+.|+.+|..|++.|.+|+|+++.+... . .+...+...........++.++. ..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-----~----------~~d~~~~~~~~~~l~~~gI~i~~~~~v 230 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-----R----------SFDSMISETITEEYEKEGINVHKLSKP 230 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----c----------ccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 4699999999999999999999999999999876531 0 01111222222223344676665 467
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.+..+.. .+.+.. +++. ..+.+|.|++|+|..|+...
T Consensus 231 ~~i~~~~~~~~~v~~-~~g~-------~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 231 VKVEKTVEGKLVIHF-EDGK-------SIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred EEEEEeCCceEEEEE-CCCc-------EEEEcCEEEEeeCCCcCccc
Confidence 77765432 233322 2341 27999999999999988753
No 222
>PLN02507 glutathione reductase
Probab=98.22 E-value=7.8e-06 Score=79.39 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+... . .+...+...........++.++.. .|
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~----------~~d~~~~~~l~~~l~~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----R----------GFDDEMRAVVARNLEGRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----c----------ccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999999999999866421 0 011112222222233446776554 77
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+.+.+.. .++. .+.+|.|++|+|..|....
T Consensus 268 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 268 TQLTKTEGGIKVIT-DHGE--------EFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEEEEeCCeEEEEE-CCCc--------EEEcCEEEEeecCCCCCCC
Confidence 88876545554433 3455 7999999999999988753
No 223
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.21 E-value=8.5e-06 Score=78.59 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.++.. +. ....+...........++.++. ..+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~~----------~d~~~~~~l~~~l~~~gV~i~~~~~V 238 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----PG----------TDTETAKTLQKALTKQGMKFKLGSKV 238 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----CC----------CCHHHHHHHHHHHHhcCCEEEECcEE
Confidence 4789999999999999999999999999999876531 00 0111111111123334777664 478
Q ss_pred eeEeCCCCEEEEE--eecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCE--TVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~--~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+..+...+.+. ...++. ...+.+|.|++|+|..|+..
T Consensus 239 ~~i~~~~~~v~v~~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAGGA------AETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEEEcCCeEEEEEEEcCCCc------eeEEEeCEEEEccCCccccc
Confidence 8887654444332 111221 12799999999999988764
No 224
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.21 E-value=1.2e-06 Score=84.80 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC-----CeEEecCCcEEeccEEEEecCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS-----QKLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~-----~~v~~~~g~~~~~D~vi~a~G~ 333 (351)
..+.+.+.+.+++.|++|+++ +|++|.. .+++..+|..+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 467888999999999999999 4998863 2456666767899999998876
No 225
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.20 E-value=1.3e-05 Score=76.54 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||+|.|||+||..++ .|.+|+|||+...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 3579999999999999999985 6999999998654
No 226
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.20 E-value=5.7e-06 Score=79.60 Aligned_cols=89 Identities=21% Similarity=0.317 Sum_probs=67.1
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||||+.|+.+|..|.+.+ .+|+++++...+ +. .+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 45579999999999999999998776 899999986422 21 3456777777888889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
||+++.+... ...+.+.+.. +.+|.||+|||..
T Consensus 204 gv~~~~~~~v---~~~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEV---GRDITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEE---CCccCHHHHH-hhCCEEEEccCCC
Confidence 9999999632 1223333333 7899999999985
No 227
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.20 E-value=9.3e-06 Score=78.31 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+++|||+|+.|+.+|..|++.|.+|+++++.+...-. ................++.++. .++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~---------------~d~~~~~~l~~~L~~~gV~i~~~~~v 241 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG---------------EDADAAEVLEEVFARRGMTVLKRSRA 241 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC---------------CCHHHHHHHHHHHHHCCcEEEcCCEE
Confidence 368999999999999999999999999999987653110 0111111222223345777664 477
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+.+.+.. .++. .+.+|.|++|+|..|+...
T Consensus 242 ~~v~~~~~~~~v~~-~~g~--------~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 242 ESVERTGDGVVVTL-TDGR--------TVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEEEeCCEEEEEE-CCCc--------EEEecEEEEeecCCcCCCC
Confidence 88865555554433 3455 8999999999999988753
No 228
>PRK08013 oxidoreductase; Provisional
Probab=98.19 E-value=1.6e-06 Score=82.02 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998764
No 229
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.16 E-value=1.7e-06 Score=81.53 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999998774
No 230
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.16 E-value=1.4e-05 Score=67.85 Aligned_cols=86 Identities=24% Similarity=0.408 Sum_probs=58.7
Q ss_pred EEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC-CC--------------CC-C--------------
Q 018704 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE-IL--------------SS-F-------------- 282 (351)
Q Consensus 234 ~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~l--------------~~-~-------------- 282 (351)
+|||||++|+-+|..|.+.+ .+ +.+++++. +. +. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999999877 56 88888752 10 00 0
Q ss_pred --------------cHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCC
Q 018704 283 --------------DDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 283 --------------~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.+++.+.+++.+++.++++..+. |+++..+ .|.+.+++++.||.||+|||.
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 02345667777888899999985 8888642 578888888999999999997
No 231
>PRK06847 hypothetical protein; Provisional
Probab=98.15 E-value=2.4e-05 Score=73.28 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|++++.+ +|++++. + .+.+.+|+++.+|.||.|+|.++.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 45566677777789999999 4888764 2 466778989999999999998876
No 232
>PTZ00058 glutathione reductase; Provisional
Probab=98.14 E-value=1.3e-05 Score=78.57 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+. + . +...+.+.........++.++. ..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~----------~---~d~~i~~~l~~~L~~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--R----------K---FDETIINELENDMKKNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--c----------c---CCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 5789999999999999999999999999999876521 0 0 0111111111122334666554 367
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+.. .+.+....++. .+.+|.|++|+|..|...
T Consensus 302 ~~I~~~~~~~v~v~~~~~~~--------~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 302 EEIEKVKEKNLTIYLSDGRK--------YEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEecCCCcEEEEECCCCE--------EEECCEEEECcCCCCCcc
Confidence 77765432 23332212233 799999999999888765
No 233
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.14 E-value=1.5e-05 Score=76.34 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=68.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.-. . ...+...........++.++. ..+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------~---~~~~~~~l~~~l~~~gV~v~~~~~v 222 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------E---DRDIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------c---CHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 468999999999999999999999999999997653100 0 011111112223345777664 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.++..+.+.. ++. ++.+|.|++|+|..|+..
T Consensus 223 ~~i~~~~~~v~v~~--~~g--------~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 223 ERISHHENQVQVHS--EHA--------QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEcCCEEEEEE--cCC--------eEEeCEEEEeecCCcCCC
Confidence 88876665555532 223 688999999999998764
No 234
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.13 E-value=9.3e-06 Score=76.76 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEE-EEEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF-FLSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 140 (351)
..+++|||+|++||.+|..|++.|++|+++|..++....... ..+...........++.+ ....+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------PEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------HHHHHHHHHHHHHCCcEEEeCCce
Confidence 479999999999999999999999999999998874321100 122222222344445665 45578
Q ss_pred eeEeCCCCEEEE--EeecCccccCCCceeEeeccEEEEecCCCcC
Q 018704 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (351)
Q Consensus 141 ~~i~~~~~~v~~--~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~ 183 (351)
..++...+.... .....+. .+.+|.+++++|..|+
T Consensus 202 ~~i~~~~~~~~~~~~~~~~~~--------~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 202 VGVEGKGNTLVVERVVGIDGE--------EIKADLVIIGPGERPN 238 (415)
T ss_pred EEEEcccCcceeeEEEEeCCc--------EEEeeEEEEeeccccc
Confidence 888887665432 1223454 8999999999999885
No 235
>PRK10262 thioredoxin reductase; Provisional
Probab=98.13 E-value=2.4e-05 Score=71.71 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=66.2
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCC-----CcHHHHHHHH
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSS-----FDDRLRHYAT 291 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~-----~~~~~~~~~~ 291 (351)
+.++|+|||||+.|+.+|..+.+.+ .++.+++..+. ++. ..+.+.+.+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g--------------~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH 70 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHH
Confidence 4469999999999999999999876 56777653211 011 1234566677
Q ss_pred HHhhhcCcEEEcCeEEEEeC--CeEEec-CCcEEeccEEEEecCCCCc
Q 018704 292 TQLSKSGVRLVRGIVKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 292 ~~l~~~gV~~~~~~v~~v~~--~~v~~~-~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+...++++..++|.+++. +.+.+. +..++.+|.||+|||..|+
T Consensus 71 ~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 71 EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR 118 (321)
T ss_pred HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC
Confidence 77777788888877666643 444443 2346899999999999887
No 236
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=1.8e-05 Score=76.43 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhcc-chhhhcCCCeEEE-EEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARI-QPAISREPGSYFF-LSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 139 (351)
..+|+|||||+.|+.+|..|++.|.+|+|||+.+...- . +...+... ...+... +.++ ...
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------------~---~d~~~~~~~~~~l~~~--v~i~~~~~ 236 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------------A---ADKDIVKVFTKRIKKQ--FNIMLETK 236 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------------c---CCHHHHHHHHHHHhhc--eEEEcCCE
Confidence 36899999999999999999999999999998775310 0 01111111 1112222 3433 346
Q ss_pred eeeEeCCCCEEEEEeec-CccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 140 CAGIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~-~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
|+.+....+.+.+...+ ++. ..++.+|.||+|+|..|+...
T Consensus 237 v~~i~~~~~~~~v~~~~~~~~------~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 237 VTAVEAKEDGIYVTMEGKKAP------AEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred EEEEEEcCCEEEEEEEeCCCc------ceEEEeCEEEEeecccccCCc
Confidence 77776554544443211 121 126999999999999988753
No 237
>PRK14727 putative mercuric reductase; Provisional
Probab=98.10 E-value=1.9e-05 Score=76.43 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=66.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+|+++...+.. ....+...........++.++. ..|
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----------------~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----------------EDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----------------chHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 46899999999999999999999999999987432110 0011111112223344676664 577
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.+..+...+.+.. ++. ++.+|.||+|+|..|+...
T Consensus 252 ~~i~~~~~~~~v~~--~~g--------~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 252 SLVEHDDNGFVLTT--GHG--------ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EEEEEeCCEEEEEE--cCC--------eEEeCEEEEccCCCCCccC
Confidence 77776555555432 233 6889999999999987653
No 238
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.10 E-value=2e-05 Score=76.45 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..||||||+|.|||+||..+++.|. |+|+|+.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 3699999999999999999999997 999998743
No 239
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.10 E-value=8.7e-06 Score=78.09 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=67.8
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
.+.++|+|||+|+.|+.+|..|.+.+ .+|+++++...+ + .++.++.....+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 45579999999999999999998876 899999986311 2 24556666667778889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCC-CCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~-~p~ 336 (351)
||+++.+.+. ...+.+.+. ..++|.||+|||. .|.
T Consensus 197 gv~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 197 GVTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred CcEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 9999999632 223444433 3469999999997 565
No 240
>PRK13748 putative mercuric reductase; Provisional
Probab=98.10 E-value=1.9e-05 Score=78.04 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++...+. . ....+...........++.++. ..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~------~----------~d~~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF------R----------EDPAIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc------c----------cCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 4689999999999999999999999999999743211 0 0011111112223344666654 477
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+..+...+.+.. ++. .+.+|.|++|+|..|+...
T Consensus 334 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 334 SQVAHVDGEFVLTT--GHG--------ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred EEEEecCCEEEEEe--cCC--------eEEeCEEEEccCCCcCCCC
Confidence 77776555554432 233 6899999999999988753
No 241
>PRK07208 hypothetical protein; Provisional
Probab=98.09 E-value=3.2e-06 Score=81.93 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+|||||++||+||+.|++.|++|+|+|+.++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45799999999999999999999999999999988753
No 242
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.09 E-value=1.7e-05 Score=75.85 Aligned_cols=96 Identities=10% Similarity=0.165 Sum_probs=65.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. +...+...........++.++. ..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~~-------------~d~~~~~~l~~~l~~~gI~i~~~~~v 212 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--KL-------------MDADMNQPILDELDKREIPYRLNEEI 212 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--hh-------------cCHHHHHHHHHHHHhcCCEEEECCeE
Confidence 3689999999999999999999999999999877532 00 0111111222223344677654 577
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++. ..+.+ .+++ .+.+|.|++|+|..|+..
T Consensus 213 ~~i~~--~~v~~---~~g~--------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 213 DAING--NEVTF---KSGK--------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred EEEeC--CEEEE---CCCC--------EEEeCEEEECcCCCcChH
Confidence 77763 34433 3455 789999999999988764
No 243
>PRK12831 putative oxidoreductase; Provisional
Probab=98.08 E-value=1.1e-05 Score=77.61 Aligned_cols=93 Identities=19% Similarity=0.362 Sum_probs=67.1
Q ss_pred hcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcH-HHHHHHHHHhh
Q 018704 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDD-RLRHYATTQLS 295 (351)
Q Consensus 227 ~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~-~~~~~~~~~l~ 295 (351)
..+.++|+|||||+.|+.+|..|.+.+ .+|+++++...+ +. ++. .+.....+.++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~ 202 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIK 202 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHH
Confidence 356789999999999999999999877 899999975321 11 222 25555667788
Q ss_pred hcCcEEEcCeEEEEeCCeEEecCC-cEEeccEEEEecCC-CCc
Q 018704 296 KSGVRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~~~v~~~~g-~~~~~D~vi~a~G~-~p~ 336 (351)
+.||+++.+... ...+.+.+. +.+.+|.||+|||. .|.
T Consensus 203 ~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 203 KLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred HcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 889999999632 122334333 33569999999997 565
No 244
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.08 E-value=2.9e-06 Score=81.49 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=32.6
Q ss_pred CcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~ 98 (351)
++|+|||||+|||+||+.|++.| ++|+|+|++++..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999999987 8999999987753
No 245
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.07 E-value=1.2e-05 Score=74.58 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=62.8
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------C--CcHHHHHHHHHHhhhcC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------S--FDDRLRHYATTQLSKSG 298 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--------~--~~~~~~~~~~~~l~~~g 298 (351)
..++|+|||+|++|+++|..|.+.+ .+|+++++.+.+. . .+.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 4469999999999999999998766 8999999964221 1 22233333445566779
Q ss_pred cEEEcCe-EEEEeC------CeEE--e--cCCcEEeccEEEEecCCC-Cc
Q 018704 299 VRLVRGI-VKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 299 V~~~~~~-v~~v~~------~~v~--~--~~g~~~~~D~vi~a~G~~-p~ 336 (351)
++++.+. +..+.. +... . .++..+++|.||+|||.. |.
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 9999995 543321 1111 1 112247899999999984 44
No 246
>PLN02268 probable polyamine oxidase
Probab=98.06 E-value=3.7e-06 Score=80.40 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=34.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~ 99 (351)
++|+|||||.|||+||+.|.+.|++|+|+|++++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 4799999999999999999999999999999988643
No 247
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.06 E-value=2.9e-05 Score=76.46 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=68.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------------CC----CcHHHHHHHHHHhh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQLS 295 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------------~~----~~~~~~~~~~~~l~ 295 (351)
.|+|||||+.|+.+|..+.+.+ .+|++++++.+. +. ....+.+.+.+.++
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~ 71 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQ 71 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHH
Confidence 8999999999999999998866 889999875321 11 12456677777788
Q ss_pred hcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|++++.++|..++.+ .+.+.+| ++.+|.||+|||.+|.
T Consensus 72 ~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 72 DFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 88999987778777642 3445444 6899999999999887
No 248
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.06 E-value=2.6e-05 Score=75.78 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++...+. . +...+.+.........++.++.. .+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~---~-------------~d~~~~~~l~~~l~~~GV~i~~~~~v 245 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR---G-------------FDRQCSEKVVEYMKEQGTLFLEGVVP 245 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc---c-------------CCHHHHHHHHHHHHHcCCEEEcCCeE
Confidence 3589999999999999999999999999998632110 0 01111111122233346766554 55
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+......+.+.. .+++ ++.+|.|++|+|..|+...
T Consensus 246 ~~v~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 246 INIEKMDDKIKVLF-SDGT--------TELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEEEEcCCeEEEEE-CCCC--------EEEcCEEEEeeCCCCCccc
Confidence 56654433343332 3455 7899999999999988654
No 249
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.05 E-value=2.4e-05 Score=75.69 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL- 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (351)
..+|+|||||+.|+.+|..++. .|.+|+|+++.+...- . +...+.+.........++.++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~------------~---~d~~~~~~l~~~L~~~GI~i~~~ 251 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR------------G---FDSTLRKELTKQLRANGINIMTN 251 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc------------c---cCHHHHHHHHHHHHHcCCEEEcC
Confidence 4689999999999999976654 4999999998776310 0 1111111212223334666655
Q ss_pred EEeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 138 SHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 138 ~~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+..+.. ...+.. .++. .+.+|.|++|+|..|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTF-ESGK--------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEEEEEcCCceEEEEE-cCCC--------EEEcCEEEEeeCCCcCcc
Confidence 46777765422 223322 3454 799999999999988765
No 250
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=2.8e-05 Score=74.90 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=66.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+...- . ....+........... +.++ ...+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~-------------~d~~~~~~~~~~l~~~-I~i~~~~~v 232 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP--L-------------EDPEVSKQAQKILSKE-FKIKLGAKV 232 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc--c-------------hhHHHHHHHHHHHhhc-cEEEcCCEE
Confidence 47899999999999999999999999999999775320 0 0111111111112223 5544 3577
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+ .+.+.. .+++ ...+.+|.|++|+|..|+...
T Consensus 233 ~~i~~~~~~~v~~~~-~~~~------~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 233 TSVEKSGDEKVEELE-KGGK------TETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEEEcCCceEEEEE-cCCc------eEEEEeCEEEEccCCccCCCC
Confidence 77765543 344321 1221 127999999999999888763
No 251
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=3.6e-06 Score=79.23 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=33.0
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++|+|+|||.|||+||++|+++|++|+|+|.++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 48999999999999999999999999999998874
No 252
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.05 E-value=1.2e-05 Score=81.97 Aligned_cols=92 Identities=21% Similarity=0.387 Sum_probs=69.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--------CCC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------l~~--~~~~~~~~~~~~l~~~ 297 (351)
.++++|+|||||+.|+.+|..|.+.| .+|+++++... ++. ++.++.....+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 46789999999999999999999877 89999998531 121 2455666666778889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCC-CCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~-~p~ 336 (351)
||+++.+... ...+.+++..+..+|.||+|||. .|.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999998633 23355555455679999999998 465
No 253
>PLN02463 lycopene beta cyclase
Probab=98.04 E-value=3.9e-05 Score=73.26 Aligned_cols=91 Identities=24% Similarity=0.421 Sum_probs=66.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--C-C---------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--S-S--------------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--~-~--------------------------- 281 (351)
.|+|||||++|+-+|..|++.| .+|.++++.+.. + .
T Consensus 30 DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 8999999999999999998755 667777664210 0 0
Q ss_pred ---------------C-cHHHHHHHHHHhhhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 282 ---------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 ---------------~-~~~~~~~~~~~l~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+ ...+.+.+.+.+.+.||+++..+|++++.+ .|.+++|.++++|.||.|+|..+.
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 122334555666778999987778887642 577789989999999999998764
No 254
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.04 E-value=1.1e-05 Score=84.18 Aligned_cols=91 Identities=20% Similarity=0.393 Sum_probs=67.8
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhcC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKSG 298 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~g 298 (351)
++++|+|||||+.|+.+|..|++.| .+|+++++.+.+ +. .+.++.....+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 4689999999999999999999887 899999986422 21 35677777778889999
Q ss_pred cEEEcCeEEEEeCCeEEecCCc-EEeccEEEEecCCC-Cc
Q 018704 299 VRLVRGIVKDVDSQKLILNDGT-EVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 299 V~~~~~~v~~v~~~~v~~~~g~-~~~~D~vi~a~G~~-p~ 336 (351)
|+++++.+.+ ..+.+.+-. ...+|.||+|||.. |.
T Consensus 495 v~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 495 VKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CEEEeCCccC---CccCHHHHhhccCCCEEEEecCCCCCC
Confidence 9999996432 223332211 24589999999984 55
No 255
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.03 E-value=1.5e-05 Score=76.56 Aligned_cols=92 Identities=21% Similarity=0.279 Sum_probs=63.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CCCc--HHHHHHHHHHhhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSFD--DRLRHYATTQLSK 296 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~~~--~~~~~~~~~~l~~ 296 (351)
...++|+|||+|+.|+.+|..|.... .+.+|+++++.+.+ |... ..+...+.+.+..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~ 91 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATD 91 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHH
Confidence 34569999999999999999997511 23899999997422 1111 2344455666777
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+|+++.+. + +..+.+.+-. ..+|.||+|+|..+.
T Consensus 92 ~~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 92 DRVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred CCeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 889998874 3 2234444432 469999999998764
No 256
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.03 E-value=2.8e-05 Score=75.23 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=63.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Eee
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (351)
.+++|||||+.|+.+|..|++.|.+|+|+++...+. . +...+...........++.++.. .+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~---~-------------~d~~~~~~l~~~L~~~gV~i~~~~~v~ 244 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR---G-------------FDQDCANKVGEHMEEHGVKFKRQFVPI 244 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc---c-------------cCHHHHHHHHHHHHHcCCEEEeCceEE
Confidence 579999999999999999999999999998732110 0 01111112122233446776654 455
Q ss_pred eEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 142 ~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.+......+.++. .++. ...++.+|.|++|+|..|+...
T Consensus 245 ~v~~~~~~~~v~~-~~~~-----~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 245 KVEQIEAKVKVTF-TDST-----NGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred EEEEcCCeEEEEE-ecCC-----cceEEEeCEEEEEecCCcCCCc
Confidence 6654444433322 1221 0127899999999999887653
No 257
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=5e-06 Score=77.90 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 68999999999999999999999999999975
No 258
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.02 E-value=4.2e-05 Score=70.85 Aligned_cols=88 Identities=28% Similarity=0.469 Sum_probs=61.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C-C--C---CC-----------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-I--L---SS----------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~--l---~~----------------------- 281 (351)
.|+|||||..|+|.|..+++.| .+|.++... + + + +.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 4899999999999999999988 888888432 2 1 1 10
Q ss_pred -------------------------Cc-HHHHHHHHHHhhh-cCcEEEcCeEEEEeC-----CeEEecCCcEEeccEEEE
Q 018704 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVDS-----QKLILNDGTEVPYGLLVW 329 (351)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~~~~~~v~~v~~-----~~v~~~~g~~~~~D~vi~ 329 (351)
.| ....+.+.+.+++ .+++++.++|+++.. .+|.+.+|..+.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 01 1123444455555 689999888988853 378899999999999999
Q ss_pred ecCC
Q 018704 330 STGV 333 (351)
Q Consensus 330 a~G~ 333 (351)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9998
No 259
>PRK07233 hypothetical protein; Provisional
Probab=98.02 E-value=4.4e-06 Score=79.73 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE--EecCCcEEeccEEEEecCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v--~~~~g~~~~~D~vi~a~G~ 333 (351)
..+.+.+.+.+++.|++++.+. |++++. +++ ...+|..+++|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence 4677888888989999999995 888863 333 3456778999999999975
No 260
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.01 E-value=7e-05 Score=65.19 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccC------ceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g------~~v~vie~~~~~ 97 (351)
.++|+|||||..|..+|++|++.+ .+|+|||...-.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA 51 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA 51 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence 379999999999999999999866 789999976543
No 261
>PRK07538 hypothetical protein; Provisional
Probab=98.01 E-value=5e-06 Score=78.97 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+|||||++||++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4899999999999999999999999999998764
No 262
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.01 E-value=5.5e-06 Score=77.35 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.||+|||||++|+.+|+.|++.|++|+|+|+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36999999999999999999999999999996544
No 263
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.01 E-value=6.4e-05 Score=72.13 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=66.1
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-----CC------------------------
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-----IL------------------------ 279 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~l------------------------ 279 (351)
..++|+|||||.+|+-+|..|.+.| .+|++++++. +.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y 74 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVY 74 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhh
Confidence 3469999999999999999998765 7788887742 10
Q ss_pred -----------------CC-------------C--cHHHHHHHHHHhhhcCcE--EEcC-eEEEEeC--C--eEEecCC-
Q 018704 280 -----------------SS-------------F--DDRLRHYATTQLSKSGVR--LVRG-IVKDVDS--Q--KLILNDG- 319 (351)
Q Consensus 280 -----------------~~-------------~--~~~~~~~~~~~l~~~gV~--~~~~-~v~~v~~--~--~v~~~~g- 319 (351)
|. + ..++.++++++++..|+. +..+ +|++++. + .|.+.++
T Consensus 75 ~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~ 154 (461)
T PLN02172 75 ESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG 154 (461)
T ss_pred hhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC
Confidence 00 0 034667777778888887 7777 4888864 2 3444432
Q ss_pred -c--EEeccEEEEecC--CCCc
Q 018704 320 -T--EVPYGLLVWSTG--VGPS 336 (351)
Q Consensus 320 -~--~~~~D~vi~a~G--~~p~ 336 (351)
. +..+|.||+|+| ..|+
T Consensus 155 ~~~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 155 GFSKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred CceEEEEcCEEEEeccCCCCCc
Confidence 2 357999999999 4565
No 264
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.00 E-value=2.4e-05 Score=75.21 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=58.1
Q ss_pred HHHHhhhcCCC-CccEEEEEeCCCCCCCCcH-HHHHHHHHHhhhcCcEEEcCe-EEEEeC-----CeEEecCCcEEeccE
Q 018704 255 RDVRQRYSHVK-DYIHVTLIEANEILSSFDD-RLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILNDGTEVPYGL 326 (351)
Q Consensus 255 ~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~~-~~~~~~~~~l~~~gV~~~~~~-v~~v~~-----~~v~~~~g~~~~~D~ 326 (351)
.+.++.||.+. ++..-.+..+.+ ..+|| .+-+.+...+++.|+.++.+. |+++.- .+|.+.-|. +++.+
T Consensus 158 ee~~~~~pLLn~d~v~g~Ly~P~D--G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~ 234 (856)
T KOG2844|consen 158 EETQELFPLLNVDDVYGGLYSPGD--GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETEC 234 (856)
T ss_pred HHHHHhCcccchhHheeeeecCCC--cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecce
Confidence 34555666644 344445554432 12343 556677778888999999995 888753 368887774 99999
Q ss_pred EEEecCCCCccccccCCC
Q 018704 327 LVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 327 vi~a~G~~p~~~~~~~gl 344 (351)
||-|+|++.++.-...|+
T Consensus 235 ~VNaaGvWAr~Vg~m~gv 252 (856)
T KOG2844|consen 235 VVNAAGVWAREVGAMAGV 252 (856)
T ss_pred EEechhHHHHHhhhhcCC
Confidence 999999998744333333
No 265
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.99 E-value=2e-05 Score=81.30 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=65.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||||+.|+.+|..|++.| .+|+++++.+.+ |. .+.+......+.+.+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH 600 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence 45679999999999999999999877 899999986321 21 2344555555667788
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.|.-. .+.+.+.+...+|.||+|||.++.
T Consensus 601 GVe~~~g~~~-----d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 601 GVEFKYGCSP-----DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred CcEEEEeccc-----ceEhhhhhcccccEEEECCCCCCC
Confidence 9999888311 122333445669999999998754
No 266
>PLN02576 protoporphyrinogen oxidase
Probab=97.98 E-value=6.7e-06 Score=80.02 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=34.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~~ 98 (351)
..+||+|||||++||+||++|.+. |++|+|+|++++..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 346899999999999999999999 99999999988753
No 267
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.96 E-value=7.2e-06 Score=79.71 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=33.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.||||||||++||+||..|++.|++|+|+|+++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 68999999999999999999999999999998765
No 268
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.96 E-value=7e-06 Score=79.15 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=32.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc----CceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~----g~~v~vie~~~~~ 97 (351)
+||+|||||++||+||+.|++. |++|+|+|++++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 6899999999999999999998 9999999998875
No 269
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.96 E-value=8e-06 Score=76.74 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+++||+|||||.+|+++|++|++.|.+|+++|++...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 5689999999999999999999999999999987653
No 270
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.95 E-value=8e-06 Score=69.26 Aligned_cols=91 Identities=29% Similarity=0.445 Sum_probs=63.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----CCCcH-----------HHH--H--HHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 292 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----~~~~~-----------~~~--~--~~~~ 292 (351)
+|+|||||+.|+.+|..|.+.+ .+++++++.... ..+.. ... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999765 899999765311 10000 011 1 3344
Q ss_pred HhhhcCcEEEcC-eEEEEeC--Ce-------E---EecCCcEEeccEEEEecCCCCc
Q 018704 293 QLSKSGVRLVRG-IVKDVDS--QK-------L---ILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 293 ~l~~~gV~~~~~-~v~~v~~--~~-------v---~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+...+++++.+ ++.+++. .. + ...++.++.+|.||+|+|..|+
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 457789999777 4777754 21 1 2235567999999999998877
No 271
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.95 E-value=2.7e-05 Score=75.07 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=66.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
.+.++|+|||+|++|+.+|..|.+.| .+|+++++.+.+ + .++.++.....+.+++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 204 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAM 204 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHC
Confidence 45679999999999999999998876 889999886422 2 13456666666778889
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.+. +.. .+.+.+ ....+|.||+|||..+.
T Consensus 205 Gv~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 205 GIEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CCEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 99999985 421 122221 22479999999998764
No 272
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.94 E-value=8.2e-06 Score=78.08 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=30.2
Q ss_pred CcEEEECCchhHHHHHHhhhc----cCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~ 94 (351)
+||+||||||+|+++|..|++ .|++|+|||++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 589999999999999999998 89999999984
No 273
>PTZ00367 squalene epoxidase; Provisional
Probab=97.94 E-value=9.8e-06 Score=79.46 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999875
No 274
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.93 E-value=1e-05 Score=78.77 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+|||||..|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 458999999999999999999999999999998643
No 275
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.92 E-value=1.1e-05 Score=75.01 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=32.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++|+++|..|++.|.+|+|+|++++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 68999999999999999999999999999997664
No 276
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.92 E-value=8.6e-06 Score=76.72 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=32.3
Q ss_pred CcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~ 97 (351)
++|+|||||++||+||++|++.+ .+++|+|++++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 47999999999999999999998 999999998764
No 277
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.92 E-value=3.3e-05 Score=74.85 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=64.4
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
.++|+|||+|.+|+++|..|...| .+|+++++.+ ......+.+.+++.||+++.+. +.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc-
Confidence 358999999999999999998877 8899998753 1233445567888899999884 32
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCCCc-cc---cccCCCCC
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS-TL---VKSLDLPK 346 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~---~~~~gl~~ 346 (351)
....+|.||+++|..|+ ++ +++.|+++
T Consensus 75 -----------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 -----------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred -----------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 12459999999999999 65 34556654
No 278
>PLN02546 glutathione reductase
Probab=97.90 E-value=6.4e-05 Score=73.78 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+... . .+...+...........++.++. ..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~----------~~d~~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----R----------GFDEEVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----c----------ccCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 4699999999999999999999999999999876521 0 01122222222223345777664 467
Q ss_pred eeEeCC-CCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+... ...+.+.. .++. ...+|.||+|+|..|+..
T Consensus 317 ~~i~~~~~g~v~v~~-~~g~--------~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 317 QAIIKSADGSLSLKT-NKGT--------VEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEEEcCCCEEEEEE-CCeE--------EEecCEEEEeeccccCCC
Confidence 777542 33344432 2232 455899999999988765
No 279
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.90 E-value=1.1e-05 Score=77.78 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||+|++||+||+.+++.|.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999875
No 280
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=1.2e-05 Score=78.25 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++||+|||||+.|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 458999999999999999999999999999998753
No 281
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.89 E-value=6.7e-05 Score=69.80 Aligned_cols=104 Identities=18% Similarity=0.336 Sum_probs=76.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE-e
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH-C 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 140 (351)
...|+|+|+|..|+.+|..|...+.+||+|++++... ..-+...+.+....+.+..++.++.+. +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~--------------~~lf~~~i~~~~~~y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL--------------PRLFGPSIGQFYEDYYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch--------------hhhhhHHHHHHHHHHHHhcCeEEEEecce
Confidence 4679999999999999999999999999999977531 112334455555666777889988764 4
Q ss_pred eeEeCCC--CEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 141 AGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 141 ~~i~~~~--~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
.++.... +...+ .+.++. .+.+|-||+.+|+.|......
T Consensus 279 s~l~~~~~Gev~~V-~l~dg~--------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEV-KLKDGK--------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEE-EeccCC--------EeccCeEEEeecccccccccc
Confidence 4444333 33333 446676 999999999999999988655
No 282
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.89 E-value=1.1e-05 Score=79.80 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.+|+|||||++||++|..|++.|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999865
No 283
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.89 E-value=5.1e-05 Score=68.57 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (351)
.+.+++|||||..||..+.--.+.|.+||++|-.++. +. . +...+......+....++.|.. .+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i---------~~-~-----mD~Eisk~~qr~L~kQgikF~l~tk 274 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQI---------GG-V-----MDGEISKAFQRVLQKQGIKFKLGTK 274 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhh---------cc-c-----cCHHHHHHHHHHHHhcCceeEeccE
Confidence 4578999999999999999999999999999986552 11 1 1122333333345556777765 48
Q ss_pred eeeEeCCCC-E--EEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 140 CAGIDTDNH-V--VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 140 v~~i~~~~~-~--v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
|.++..... . +.++...+++ +.++.+|.+.+|+|.+|..-+
T Consensus 275 v~~a~~~~dg~v~i~ve~ak~~k------~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 275 VTSATRNGDGPVEIEVENAKTGK------KETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred EEEeeccCCCceEEEEEecCCCc------eeEEEeeEEEEEccCcccccC
Confidence 888887766 4 4444444444 458999999999999988764
No 284
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.89 E-value=8.2e-05 Score=74.16 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=67.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchh-hhcCCCeEEEE-EE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA-ISREPGSYFFL-SH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 139 (351)
..+|+|||||+.|+..|..|++.|.+|+|||+.+++.- . +...+...... +....++.++. ..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~------------~---~d~eis~~l~~~ll~~~GV~I~~~~~ 376 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP------------L---LDADVAKYFERVFLKSKPVRVHLNTL 376 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc------------c---CCHHHHHHHHHHHhhcCCcEEEcCCE
Confidence 46899999999999999999999999999999776320 0 11112222111 22334666654 46
Q ss_pred eeeEeCCCC--EEEEEeecC--cccc----CCCceeEeeccEEEEecCCCcCCCC
Q 018704 140 CAGIDTDNH--VVHCETVTD--ELRT----LEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 140 v~~i~~~~~--~v~~~~~~~--~~~~----~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
|..++.+.. .+.+...+. ++.. ...+..++.+|.|++|+|..|+...
T Consensus 377 V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 377 IEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 777765442 244322110 1000 0001137999999999999988754
No 285
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.88 E-value=1.3e-05 Score=76.16 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=30.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
||||||+|.|||+||+.+++.|.+|+|||+.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence 7999999999999999999999999999998763
No 286
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.88 E-value=1.4e-05 Score=79.58 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||..+++.|.+|+|||+..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 45799999999999999999999999999999764
No 287
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.88 E-value=2.5e-05 Score=76.04 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+..+||||||+|.||++||+.+++.|.+|+|||+.+.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3468999999999999999999999999999998764
No 288
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.87 E-value=3.9e-05 Score=74.30 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=65.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
..+++|+|||+|++|+.+|..|.+.+ .+|+++++...+ +. ++.++.....+.+++.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAE 206 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhC
Confidence 45579999999999999999998876 889999886421 21 3455666666778889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC-Cc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~-p~ 336 (351)
||+++.+.....+ +.. ++...++|.||+|||.. |.
T Consensus 207 Gv~~~~~~~v~~~---~~~-~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 207 GIDFVTNTEIGVD---ISA-DELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred CCEEECCCEeCCc---cCH-HHHHhhCCEEEEccCCCCCC
Confidence 9999999622211 111 12235799999999987 44
No 289
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00014 Score=65.73 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=69.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCC------------CCC-----CcHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LSS-----FDDRLRHYATTQ 293 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~------------l~~-----~~~~~~~~~~~~ 293 (351)
.|+|||||+.|+-.|-++.+.+ .+ +.+++.... .|. ..+++.+.+.++
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 8999999999999999999876 55 444444210 122 346788888888
Q ss_pred hhhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
....++++....|..++.. .|.+.+|. ++++.||+|||..+.
T Consensus 71 a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 8889999999778888765 35556666 999999999998877
No 290
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.87 E-value=1e-05 Score=78.83 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
..+.+.+.+.+++.|++++.++ |.++.. + +|++.+|+++.+|.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 4677888888999999999994 888753 3 5777888889999999998853
No 291
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.86 E-value=2.2e-05 Score=78.40 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~ 96 (351)
...||+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 35799999999999999999999 4999999997653
No 292
>PLN02487 zeta-carotene desaturase
Probab=97.86 E-value=2.1e-05 Score=77.01 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+++|+|||||++||++|+.|++.|++|+|+|+.+..
T Consensus 73 g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 73 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 34579999999999999999999999999999988764
No 293
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.85 E-value=1.4e-05 Score=77.20 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=31.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc------CceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~------g~~v~vie~~~~~~ 98 (351)
++|+|||||++||+||+.|++. |++|+|+|++++..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 5799999999999999999985 48999999988753
No 294
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=2.2e-05 Score=72.65 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
...+||||||||.||..||...+|.|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 35689999999999999999999999999988754
No 295
>PLN02568 polyamine oxidase
Probab=97.84 E-value=1.9e-05 Score=77.13 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=33.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-----ceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-----~~v~vie~~~~~ 97 (351)
+.+||+|||||++||+||..|++.| ++|+|+|++...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 3479999999999999999999877 899999998765
No 296
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.84 E-value=4.5e-05 Score=73.67 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=64.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------C--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------S--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--------~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||+|+.|+.+|..|.+.+ .+|+++++...+. . ++.++.....+.+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 45679999999999999999999876 8899999864221 1 2445555566678888
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
||+++.++....+ +.. +.....+|.||+|||..
T Consensus 207 gv~~~~~~~v~~~---~~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 207 GIEFRTNVEVGKD---ITA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred CcEEEeCCEECCc---CCH-HHHHhhCCEEEEecCCC
Confidence 9999999633221 111 11235799999999997
No 297
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.83 E-value=1.6e-05 Score=77.39 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+++.|++++.++ |+++.. + +|.+.+|+++++|.||+++|....
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 4677888899999999999995 888753 2 677888989999999999986543
No 298
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.82 E-value=9.1e-05 Score=65.31 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhh--ccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGID--TSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~--~~g~~v~vie~~~~~~ 98 (351)
...+|+||||||..|++.|++|. ..+.+|.|+|+...+.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 45699999999999999999985 4699999999987754
No 299
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.82 E-value=3.3e-05 Score=69.81 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=30.6
Q ss_pred CcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~~ 98 (351)
+|+||||+|++|..+|.+|++.+ .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 59999999999999999999987 7999999987643
No 300
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.82 E-value=1.6e-05 Score=76.54 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.4
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
+|+|||||++||+||+.|.+.|++|+|+|+.+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 58999999999999999999999999999987643
No 301
>PRK07121 hypothetical protein; Validated
Probab=97.81 E-value=3e-05 Score=75.34 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||||||+|.|||+||+.+++.|.+|+|+|+....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4689999999999999999999999999999987653
No 302
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.81 E-value=2.6e-05 Score=72.28 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=36.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~ 100 (351)
....||+|||+|.+||++|+.|.+.|++|+|+|.+++...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 34589999999999999999999999999999998887544
No 303
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.81 E-value=7.5e-05 Score=69.91 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=30.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
||+|||+|.|||++|..|.+. ++|+|+.+.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999999 999999976554
No 304
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.80 E-value=2e-05 Score=71.83 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhc------cCceEEEEcCCCcc
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHM 97 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~------~g~~v~vie~~~~~ 97 (351)
....+||+|||||||||+||++|.+ ..++|+|+|+....
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~ 117 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV 117 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence 3456899999999999999999965 35689999976543
No 305
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.79 E-value=0.00026 Score=63.63 Aligned_cols=91 Identities=25% Similarity=0.387 Sum_probs=66.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~------------------------------ 281 (351)
.|+|||||.+|+-+|..|++.| .+|+++++......
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 6999999999999999998766 78888887632100
Q ss_pred --------------------Cc-HHHHHHHHHHhhhcCcEEEcC-eEEEEe--CCe--EEecC-CcEEeccEEEEecCCC
Q 018704 282 --------------------FD-DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 334 (351)
Q Consensus 282 --------------------~~-~~~~~~~~~~l~~~gV~~~~~-~v~~v~--~~~--v~~~~-g~~~~~D~vi~a~G~~ 334 (351)
++ ..+.+.+.+.+++.|++++.+ +++++. +++ +.+.+ +.++++|.||.|+|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 11 245566777788889999998 487754 343 33343 4579999999999986
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 54
No 306
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.79 E-value=5.1e-05 Score=76.12 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=66.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||+|+.|+.+|..|.+.| .+|+++++...+ +. ++.++.....+.+.+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM 256 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHc
Confidence 45679999999999999999999876 889999986422 21 3455666666778888
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|++++.+...+.+ +.+.+. ...+|.||+|||..+.
T Consensus 257 Gv~i~~~~~v~~d---v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 257 GAEFRFNTVFGRD---ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CCEEEeCCcccCc---cCHHHH-HhhcCEEEEEcCCCCC
Confidence 9999998643221 222222 2359999999998753
No 307
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.75 E-value=7.9e-05 Score=74.69 Aligned_cols=90 Identities=14% Similarity=0.271 Sum_probs=66.3
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
.++++|+|||+|++|+.+|..|.+.| .+|+++++.+.+ +. ++..+.+...+.+++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 373 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAM 373 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHC
Confidence 35789999999999999999999877 889999987422 11 4556666666778889
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.+. +.. .+.+.+ ....+|.||+|+|..+.
T Consensus 374 Gv~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 374 GIDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred CeEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 99999985 421 122222 23468999999998643
No 308
>PRK07236 hypothetical protein; Provisional
Probab=97.75 E-value=0.00017 Score=67.92 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=64.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC------CcHHHHHHHHH-----------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYATT----------- 292 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~------~~~~~~~~~~~----------- 292 (351)
.+|+|||||.+|+.+|..|.+.| .+|+++++.+ .... +.+...+.+.+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 38999999999999999999876 8899998863 2211 12222222221
Q ss_pred --------------------------------Hhhh--cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 293 --------------------------------QLSK--SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 293 --------------------------------~l~~--~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.|.+ .+++++.+. |++++. + .+.+++|+++.+|.||.|-|.
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 1111 135688884 888864 2 367789999999999999997
Q ss_pred CCc
Q 018704 334 GPS 336 (351)
Q Consensus 334 ~p~ 336 (351)
...
T Consensus 153 ~S~ 155 (386)
T PRK07236 153 RST 155 (386)
T ss_pred Cch
Confidence 665
No 309
>PLN02529 lysine-specific histone demethylase 1
Probab=97.74 E-value=3.2e-05 Score=77.66 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=35.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
...++|+|||||++||+||..|++.|++|+|+|++++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence 346799999999999999999999999999999987643
No 310
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.74 E-value=0.00011 Score=66.53 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=73.0
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------hh----hhh----hhc---------c-----
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL----LAS----TCV---------G----- 109 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~~----~~~----~~~---------~----- 109 (351)
.+...||+|||||.+|-+.|+.|++.|.+|.|||++-..+-+ |. +.. -|. |
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk 121 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK 121 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence 355689999999999999999999999999999965221100 00 000 000 0
Q ss_pred ------cccc------------cccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEE---EEeecCccccCCCceeE
Q 018704 110 ------TLEF------------RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVH---CETVTDELRTLEPWKFK 168 (351)
Q Consensus 110 ------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~---~~~~~~~~~~~~~~~~~ 168 (351)
.+.+ ..-...+++.++.....+++.+..+.|+.+-.++..+. ..+ +.++ ..+
T Consensus 122 ~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~-k~ge------e~~ 194 (509)
T KOG1298|consen 122 DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKN-KEGE------EVE 194 (509)
T ss_pred CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEec-CCCc------eEE
Confidence 0000 01123345556667778889999999988877776543 222 2232 236
Q ss_pred eeccEEEEecCCC
Q 018704 169 ISYDKLVIALGAE 181 (351)
Q Consensus 169 ~~~d~lviAtG~~ 181 (351)
..+.-=|+|-|..
T Consensus 195 ~~ApLTvVCDGcf 207 (509)
T KOG1298|consen 195 AFAPLTVVCDGCF 207 (509)
T ss_pred EecceEEEecchh
Confidence 6677789999964
No 311
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.71 E-value=3e-05 Score=74.23 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=31.1
Q ss_pred cEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
||||||||.|||+||+.+++.| .+|+|||+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 7999999999999999999999 99999998754
No 312
>PRK06834 hypothetical protein; Provisional
Probab=97.70 E-value=0.00043 Score=67.17 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+++.||+++.+. +++++. + .+++.+|.++.+|.||.|.|.++.
T Consensus 103 e~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 103 ERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 3445556677799999994 888754 3 355567888999999999998875
No 313
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.70 E-value=0.00028 Score=65.97 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=62.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------CCcHHHH--------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------SFDDRLR-------------- 287 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----------~~~~~~~-------------- 287 (351)
.|+|||||..|+.+|..|.+. .++.+|.++++.+... ..++...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~ 68 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGY 68 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCC
Confidence 389999999999999988753 1238899998864111 1111110
Q ss_pred --------------------HHHHHHh-hhcCcEEEcC-eEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 288 --------------------HYATTQL-SKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 --------------------~~~~~~l-~~~gV~~~~~-~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+ ++.+..++.+ +|.+++.+++++.+|+++.+|.||.|.|..+.
T Consensus 69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCC
Confidence 0111221 1113335556 58899888899999999999999999998875
No 314
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.69 E-value=4.1e-05 Score=70.07 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|||||||.+||++|..|.+.|++|+|+|+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 46899999999999999999999999999997544
No 315
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.68 E-value=0.00039 Score=65.40 Aligned_cols=90 Identities=24% Similarity=0.409 Sum_probs=63.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
.|+|||||.+|+-+|..|++.| .+|.++++.+..+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence 3899999999999999988755 6677766532000
Q ss_pred --------------CC-cHHHHHHHHHHhhhcCcEEEcCeEEEEeCC-----eEEecCCcEEeccEEEEecCCCC
Q 018704 281 --------------SF-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 281 --------------~~-~~~~~~~~~~~l~~~gV~~~~~~v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
.. ...+.+.+.+.+.+.|++++.+++..+..+ .|.+.+|.++.+|.||.|+|..+
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00 022334555556677899987777777532 35667888899999999999876
No 316
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.68 E-value=0.00012 Score=73.68 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
.++++|+|||+|++|+.+|..|.+.| .+|+++++...+ +. ++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 45789999999999999999999877 889999986422 21 3455555556677888
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
||+++.+..... .+.+.+ ....+|.||+|+|...
T Consensus 391 Gv~~~~~~~v~~---~i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 391 GIEFELNCEVGK---DISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred CeEEECCCEeCC---cCCHHH-HHhcCCEEEEeCCCCC
Confidence 999999852211 122211 1236999999999754
No 317
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.67 E-value=0.00045 Score=67.72 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=63.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC---C---C---------------C-------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL---S---S---------------F------- 282 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l---~---~---------------~------- 282 (351)
.|+|||||+.|+++|..+++.| .+|.++++.. .+ + . +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 7999999999999999999877 7788887751 11 0 0 0
Q ss_pred --------------------------cH-HHHHHHHHHhhhc-CcEEEcCeEEEEe--CC---eEEecCCcEEeccEEEE
Q 018704 283 --------------------------DD-RLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (351)
Q Consensus 283 --------------------------~~-~~~~~~~~~l~~~-gV~~~~~~v~~v~--~~---~v~~~~g~~~~~D~vi~ 329 (351)
|. .....+.+.+++. |++++.++|.++. ++ +|.+.+|..+.|+.||+
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 00 0122333344443 8888877777764 22 57788999999999999
Q ss_pred ecCCCCc
Q 018704 330 STGVGPS 336 (351)
Q Consensus 330 a~G~~p~ 336 (351)
|+|...+
T Consensus 152 ATGTFL~ 158 (618)
T PRK05192 152 TTGTFLR 158 (618)
T ss_pred eeCcchh
Confidence 9996543
No 318
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.67 E-value=3.8e-05 Score=76.10 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.||||||+|.|||+||..+++.|.+|+|+|+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4699999999999999999999999999999654
No 319
>PLN02676 polyamine oxidase
Probab=97.67 E-value=4.7e-05 Score=73.68 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=34.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~~ 98 (351)
..+||+|||||++||+||++|++.|. +|+|+|+++...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 35799999999999999999999998 599999988753
No 320
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.66 E-value=5.7e-05 Score=74.15 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||+|.|||+||..+++.|.+|+|+|+...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 458999999999999999999999999999998764
No 321
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.66 E-value=4.1e-05 Score=74.72 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||+| +||+||+.+++.|.+|+|||+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 35899999999 999999999999999999997754
No 322
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.65 E-value=5.7e-05 Score=76.30 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=34.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
....+|+|||||++||+||+.|.+.|++|+|+|++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 44689999999999999999999999999999998765
No 323
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.64 E-value=4.3e-05 Score=73.84 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.9
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+|+|||||++||++|+.|++.|++|+|+|+++..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 5899999999999999999999999999998764
No 324
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.63 E-value=5.3e-05 Score=74.64 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||+|.|||+||..+++.|.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45899999999999999999999999999999877
No 325
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.63 E-value=6.7e-05 Score=74.25 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=34.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+.||||||+|.|||+||+.+++.|.+|+|+|+....
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 4589999999999999999999999999999988654
No 326
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.63 E-value=6.2e-05 Score=74.63 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||..+++.|.+|+|||+..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 45799999999999999999999999999999863
No 327
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.63 E-value=5.1e-05 Score=74.90 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||..+++.|.+|+|+|+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 45799999999999999999999999999999764
No 328
>PLN02612 phytoene desaturase
Probab=97.61 E-value=6.9e-05 Score=73.93 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce----EEecCCcEEeccEEEEecC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK----LILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~----v~~~~g~~~~~D~vi~a~G 332 (351)
..+.+.+.+++++.|++++++. |++|.. ++ +.+.+|+++++|.||+|+.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 4677888888888999999995 998863 33 6677898899999999985
No 329
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.60 E-value=5.5e-05 Score=67.55 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=33.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~ 100 (351)
.++|+|||+|++||+||+.|.++ .+||++|.+.+...+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 47899999999999999999998 799999998876543
No 330
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=6.2e-05 Score=75.25 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
....||||||||.|||+||..+++.|.+|+|+|++.
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 346799999999999999999999999999999754
No 331
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=5e-05 Score=75.80 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||||.|||+||..+++.|.+|+|||+...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 457999999999999999999999999999998643
No 332
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.60 E-value=5.2e-05 Score=77.46 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=31.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~ 97 (351)
++|+|||||||||++|+.|++. |++|+|+|+.+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 4799999999999999999997 8999999988753
No 333
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.59 E-value=7.4e-05 Score=73.44 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+||||||+|.|||+||+.+++ |.+|+|||+...
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence 445899999999999999999974 999999998754
No 334
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.59 E-value=6.7e-05 Score=74.52 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||+.+++.|.+|+|+|+..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 45799999999999999999999999999999764
No 335
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.58 E-value=0.00061 Score=64.29 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. +|+++.+ ++++++. + .+.+.+|+++.+|.||.|.|....
T Consensus 113 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 3344445444 5999999 4888864 2 355678888999999999998765
No 336
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.58 E-value=6.3e-05 Score=74.92 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||.|||+||+.+++.|.+|+|+|+...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 457999999999999999999999999999997654
No 337
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.58 E-value=8.1e-05 Score=70.86 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEe--CC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.++.+.+.+.++..|.+++.++ |+++. ++ +|++.+|+++.|+.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4788888888899999999995 99884 22 377889999999999999888877
No 338
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.57 E-value=0.00016 Score=73.83 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=32.2
Q ss_pred hcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 227 ~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..++|+|+|||+|+.|+.+|..|++.| .+|+++++.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 357789999999999999999999877 899999974
No 339
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.57 E-value=7.4e-05 Score=69.46 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~~ 98 (351)
...+|||||||.|||+||.+|-+.|+ +++|+|..++..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 34689999999999999999997666 599999887753
No 340
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.56 E-value=0.00089 Score=59.05 Aligned_cols=91 Identities=19% Similarity=0.316 Sum_probs=65.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------C-------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-----------~------------------- 281 (351)
.|+|||||++|+-+|..+++.+ .+|.++++...+. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 8999999999999999998866 7888888853210 0
Q ss_pred ---------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C-----eEEec-----------CCcEEeccEEEEecCC
Q 018704 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-----KLILN-----------DGTEVPYGLLVWSTGV 333 (351)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~-----~v~~~-----------~g~~~~~D~vi~a~G~ 333 (351)
...++.+.+.+.+.+.|++++.+. +.++.. + +++++ |...++++.||.|||.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 012344555666778899999994 777642 2 44443 2246899999999998
Q ss_pred CCc
Q 018704 334 GPS 336 (351)
Q Consensus 334 ~p~ 336 (351)
...
T Consensus 169 ~a~ 171 (254)
T TIGR00292 169 DAE 171 (254)
T ss_pred Cch
Confidence 765
No 341
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.56 E-value=0.00022 Score=67.90 Aligned_cols=89 Identities=12% Similarity=0.189 Sum_probs=57.5
Q ss_pred ccCeEEEECCChHHHHHHHHHHH-HHHHHHHhhhcCCCCccEEEEEeCCCCC---------CCCc--HHHHHHHHHHhhh
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSFD--DRLRHYATTQLSK 296 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~~~--~~~~~~~~~~l~~ 296 (351)
+.++|+|||+|++|+.+|..|.. .+ .+|+++++.+.+ |... ..+.+.+.+.+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g--------------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~ 103 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER--------------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLS 103 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC--------------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhh
Confidence 34699999999999999997653 33 889999997422 1111 2344455555666
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++++.+. |- ..+.+++= .-.+|.||+|+|..+.
T Consensus 104 ~~v~f~gnv~VG----~Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 104 PNYRFFGNVHVG----VDLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred CCeEEEeeeEec----CccCHHHH-HhcCCEEEEEcCCCCC
Confidence 788887442 21 11222211 2368999999998765
No 342
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.56 E-value=0.00075 Score=66.09 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=63.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC----CC------------------C---------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE----IL------------------S--------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~l------------------~--------- 280 (351)
.|+|||+|.+|+++|..+++.+ .+|.++++.. .+ .
T Consensus 2 DViVIGaG~AGl~aA~ala~~G--------------~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~ 67 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMG--------------AKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA 67 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCC--------------CCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH
Confidence 6899999999999999999876 5666666531 00 0
Q ss_pred ------------------------CCcH-HHHHHHHHHhhhc-CcEEEcCeEEEEe---CC---eEEecCCcEEeccEEE
Q 018704 281 ------------------------SFDD-RLRHYATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLV 328 (351)
Q Consensus 281 ------------------------~~~~-~~~~~~~~~l~~~-gV~~~~~~v~~v~---~~---~v~~~~g~~~~~D~vi 328 (351)
.+|. .+...+.+.+++. ++.++.+++.++. ++ +|.+.+|..+.||.||
T Consensus 68 ~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VI 147 (617)
T TIGR00136 68 ADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVI 147 (617)
T ss_pred HHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEE
Confidence 0111 1123444555555 8999888776663 22 5788889899999999
Q ss_pred EecCCCCc
Q 018704 329 WSTGVGPS 336 (351)
Q Consensus 329 ~a~G~~p~ 336 (351)
+|+|...+
T Consensus 148 LATGtfL~ 155 (617)
T TIGR00136 148 ITTGTFLR 155 (617)
T ss_pred EccCcccC
Confidence 99998865
No 343
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.56 E-value=6.5e-05 Score=74.40 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC---ceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g---~~v~vie~~~~ 96 (351)
...||+|||||.|||+||..+++.| .+|+|+|+...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 4579999999999999999999998 89999997643
No 344
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.56 E-value=7.1e-05 Score=74.13 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||.|||+||..+++.|.+|+|+|+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 357999999999999999999999999999998743
No 345
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.56 E-value=0.0006 Score=66.58 Aligned_cols=90 Identities=22% Similarity=0.351 Sum_probs=60.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------------------------- 279 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------------------------------- 279 (351)
|+|+|||||.+|+-.+..|.+.| .+++++++++-+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 59999999999999999998876 899999885311
Q ss_pred -CCCc-----------HHHHHHHHHHhhhcCc--EEEcCe-EEEEeC--C-------eEEec-CCc--EEeccEEEEecC
Q 018704 280 -SSFD-----------DRLRHYATTQLSKSGV--RLVRGI-VKDVDS--Q-------KLILN-DGT--EVPYGLLVWSTG 332 (351)
Q Consensus 280 -~~~~-----------~~~~~~~~~~l~~~gV--~~~~~~-v~~v~~--~-------~v~~~-~g~--~~~~D~vi~a~G 332 (351)
+.++ .++.++++.++++.++ .+.+++ |.+++. + .|++. +|+ +..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 0011 3567788888887776 477784 887753 1 35554 343 346899999999
Q ss_pred CC
Q 018704 333 VG 334 (351)
Q Consensus 333 ~~ 334 (351)
.-
T Consensus 148 ~~ 149 (531)
T PF00743_consen 148 HF 149 (531)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 346
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.55 E-value=6.3e-05 Score=74.41 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=30.4
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
||||||||.|||+||..+++.|.+|+|||+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 79999999999999999999999999999865
No 347
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.55 E-value=0.001 Score=58.80 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=64.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------C-------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-----------~------------------- 281 (351)
.|+|||||++|+-+|..+++.+ .+|.++++...+. .
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 8999999999999999998766 8888888753110 0
Q ss_pred ---------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEe--CC----eEEec-----------CCcEEeccEEEEecCCC
Q 018704 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~----~v~~~-----------~g~~~~~D~vi~a~G~~ 334 (351)
-...+...+.+.+.+.|++++.+. |.++. ++ ++... +...+.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 012344556666778899999994 77764 23 22221 22468999999999976
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 173 a~ 174 (257)
T PRK04176 173 AE 174 (257)
T ss_pred cH
Confidence 65
No 348
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.55 E-value=8e-05 Score=66.05 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
+++||+|||||.|||+||..|.+.|.++.||...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 4589999999999999999999999999999855
No 349
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.55 E-value=0.00071 Score=63.97 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCCC
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
.+.+.+.+.+.+.|++++.+. |++++. + .+++.+|.++.+|.||.|.|.++. +.+.+|++
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence 455666677777899999984 888854 3 356678888999999999998766 23334443
No 350
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.54 E-value=7.1e-05 Score=75.00 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||.|||.||..+++.|.+|+|+|+...
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 457999999999999999999999999999997654
No 351
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.53 E-value=6.9e-05 Score=74.55 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
..||||||||.|||+||..+++. |.+|+|||+...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 47999999999999999999997 999999998753
No 352
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.52 E-value=0.00012 Score=71.99 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~ 99 (351)
+..+||||||+| +|++||..+++.|.+|+|||+.+....
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 457899999999 899999999999999999999866533
No 353
>PRK09126 hypothetical protein; Provisional
Probab=97.52 E-value=0.0008 Score=63.37 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=33.0
Q ss_pred hcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..|++++.+. |++++. + .|.+++|+++++|.||.|.|..+.
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 4589999994 887753 3 466678889999999999998776
No 354
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.51 E-value=0.00016 Score=68.83 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=66.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
..+++|+|||+|+.|+.+|..|++.| ..|+++++.... |. ++.++.+...+.|++.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~ 186 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERS 186 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHc
Confidence 45579999999999999999999887 899999885321 22 4567788888899999
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
|++|+.+.-.+. .+.+++= .-++|.|++|+|..
T Consensus 187 Gv~~~~~~~vG~---~it~~~L-~~e~Dav~l~~G~~ 219 (457)
T COG0493 187 GVEFKLNVRVGR---DITLEEL-LKEYDAVFLATGAG 219 (457)
T ss_pred CeEEEEcceECC---cCCHHHH-HHhhCEEEEecccc
Confidence 999999853322 1333221 23469999999964
No 355
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.50 E-value=9.2e-05 Score=72.96 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.++||||||+|.+||++|..+++.|.+|+|||+....
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999987543
No 356
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.50 E-value=0.00084 Score=63.56 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+++.|++++.+ ++.+++. + .|.+.+|+++.+|.||.|.|....
T Consensus 116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 34445566678999988 4888754 3 356678888999999999998765
No 357
>PLN02697 lycopene epsilon cyclase
Probab=97.49 E-value=0.00093 Score=65.07 Aligned_cols=92 Identities=23% Similarity=0.382 Sum_probs=64.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC------------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------------------------------ 279 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l------------------------------ 279 (351)
..|+|||||++|+-+|..+++.| .+|.++++.. +.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 38999999999999999998755 5566655421 10
Q ss_pred ---------CC---Cc-HHHHHHHHHHhhhcCcEEEcCeEEEEeC--Ce---EEecCCcEEeccEEEEecCCCCc
Q 018704 280 ---------SS---FD-DRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 280 ---------~~---~~-~~~~~~~~~~l~~~gV~~~~~~v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.. ++ ..+.+.+.+.+.+.|++++..+|+++.. ++ +.+.+|.++.+|.||.|+|..+.
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 00 01 2233555566677799996667888853 33 35577888999999999998774
No 358
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.49 E-value=9.4e-05 Score=73.22 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
.+||||||||.|||+||+.+++. |.+|+|+|+...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 47999999999999999999976 589999998754
No 359
>PRK08275 putative oxidoreductase; Provisional
Probab=97.48 E-value=9.5e-05 Score=72.89 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
..+||||||||.|||+||..+++. |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 457999999999999999999976 789999998764
No 360
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.47 E-value=0.0013 Score=61.84 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhcC-cEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~g-V~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.| ++++ + +++++.. + .+.+.+|.++.+|.||.|.|....
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 3445555666666 8888 6 5887753 3 456678888999999999998765
No 361
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.47 E-value=9.1e-05 Score=71.99 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
+||+|||+||+|+.+|+.|++.|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 589999999999999999999999999999987754
No 362
>PLN02815 L-aspartate oxidase
Probab=97.46 E-value=0.00013 Score=72.07 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...||||||+|.|||+||+.+++.| +|+|+|+....
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 4579999999999999999999999 99999987653
No 363
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.45 E-value=0.00055 Score=60.69 Aligned_cols=31 Identities=29% Similarity=0.271 Sum_probs=28.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.|||||+|.|||+|+..+-..|-.|+++|+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~ 41 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKA 41 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEecc
Confidence 6999999999999999999887789999944
No 364
>PRK05868 hypothetical protein; Validated
Probab=97.45 E-value=0.0012 Score=61.71 Aligned_cols=41 Identities=7% Similarity=0.269 Sum_probs=32.9
Q ss_pred hcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..|++++.+. |++++. + .+.+++|.++++|+||-|-|.+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 3578899884 888753 3 466789999999999999998776
No 365
>PRK07588 hypothetical protein; Provisional
Probab=97.44 E-value=0.0011 Score=62.37 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=32.2
Q ss_pred cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++++.+. |++++. + .+.+++|+++++|.||-|-|.+..
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 479999994 888764 3 366789988999999999998765
No 366
>PRK13984 putative oxidoreductase; Provisional
Probab=97.44 E-value=0.00037 Score=69.59 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=64.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
.+.++|+|||+|+.|+.+|..|.+.| .+|+++++.+.. + .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 56789999999999999999999877 899999886422 1 12345555555678888
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
|++++.+. |.. .+.+++ ...++|.||+|||..+
T Consensus 347 gv~~~~~~~v~~----~~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCC----cCCHHH-HHhcCCEEEEEcCcCC
Confidence 99999995 421 111221 2357999999999763
No 367
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.43 E-value=0.00013 Score=72.39 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.1
Q ss_pred cEEEECCchhHHHHHHhhh----ccCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~----~~g~~v~vie~~~~ 96 (351)
||||||||.|||+||+.++ +.|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999998653
No 368
>PRK02106 choline dehydrogenase; Validated
Probab=97.42 E-value=0.00016 Score=71.43 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=33.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~ 96 (351)
..+|+||||||.+|+.+|.+|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34899999999999999999999 8999999999864
No 369
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.42 E-value=0.00017 Score=63.85 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=33.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.|++|||||.+|+.+|..|++.|.+|+|||++++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 68999999999999999999999999999999885
No 370
>PRK12839 hypothetical protein; Provisional
Probab=97.41 E-value=0.00017 Score=71.24 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...||+|||+|.+|+++|+.+++.|.+|+|||+....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999987543
No 371
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00043 Score=70.37 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=70.6
Q ss_pred CCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--------CCC--CcHHHHHHHH
Q 018704 222 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS--FDDRLRHYAT 291 (351)
Q Consensus 222 ~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------l~~--~~~~~~~~~~ 291 (351)
+.++...++++|+|||+|++|+-+|..|.+.| ..|++.+|.+- .|. +|..+.++-.
T Consensus 1777 p~pp~~rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv 1842 (2142)
T KOG0399|consen 1777 PCPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRV 1842 (2142)
T ss_pred cCCcccccCcEEEEEccCchhhhHHHHHhhcC--------------cEEEEEEecCCcCceeeecCCccchhHHHHHHHH
Confidence 34567788999999999999999999999887 89999999631 122 4556666667
Q ss_pred HHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
+.|.+.||+++++. |-. .+. -|+-.-+.|.||+|+|..
T Consensus 1843 ~ll~~egi~f~tn~eigk----~vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1843 DLLEQEGIRFVTNTEIGK----HVS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred HHHHhhCceEEeeccccc----ccc-HHHHhhccCeEEEEeCCC
Confidence 78899999999884 421 122 234445689999999965
No 372
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.38 E-value=0.00016 Score=70.44 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..||||||+|.|||+||..+++ |.+|+|+|+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4799999999999999999987 899999997754
No 373
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.38 E-value=0.00015 Score=71.45 Aligned_cols=34 Identities=32% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||+|.|||+||..+ +.|.+|+|+|+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 347999999999999999999 8999999999864
No 374
>PRK06184 hypothetical protein; Provisional
Probab=97.38 E-value=0.0015 Score=63.84 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEe---cCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~---~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+.|++++.+ ++++++. ++ +.+ .+++++.+|.||.|.|.+..
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 3455667777789999999 4888864 33 344 45667999999999998765
No 375
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.37 E-value=0.00021 Score=68.50 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...||+|||||..|+.+|..++.+|++|+|+|+++.-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence 5689999999999999999999999999999987654
No 376
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.37 E-value=0.0017 Score=61.96 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=39.3
Q ss_pred HHHHHHHhhhcCcEEEcC-eEEEEe--CCeE--EecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 287 RHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~-~v~~v~--~~~v--~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
.+.+.+.+++.|++++.+ +|+++. ++.+ ...+|.++.||.||.|+|.... +.+.+|+
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~-l~~~lgl 172 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSI-LAEKLGM 172 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHH-HHHHcCC
Confidence 345666677789999999 488764 3333 3356778999999999997543 3344444
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.35 E-value=0.00039 Score=67.39 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+|+|||+|.+|+++|..|++.|++|+++|..+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999754
No 378
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.34 E-value=0.0021 Score=61.06 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHhhh-cCcEEEcC-eEEEEeC--C--eEEecC-C--cEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILND-G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~-g--~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+ .+|+++.+ ++++++. + .+.+.+ + .++++|+||.|.|....
T Consensus 124 ~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 124 LEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 3344444444 37999988 4888754 3 355543 2 36999999999998765
No 379
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.34 E-value=0.00017 Score=71.51 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
...||||||||.|||+||+.+++. |.+|+|+|+...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 347999999999999999999976 579999997643
No 380
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.33 E-value=0.00019 Score=65.91 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce--EEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~--v~vie~~~~~ 97 (351)
..++|+|+|||.+||++|++|++++.+ ++|+|.+++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 457999999999999999999998776 5669998875
No 381
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.33 E-value=0.0023 Score=59.96 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcC-cEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~g-V~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+.| ++++.+ +|++++. + .+.+++|+++.+|.||.|.|....
T Consensus 109 ~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 109 QQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 344445555666 899988 4888753 3 356678888999999999997655
No 382
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.32 E-value=0.0016 Score=60.02 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEec---CCc--EEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILN---DGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~---~g~--~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|++++.+. +.+++. ++ +.+. +|+ ++++|+||-|-|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 345566667777889999994 776643 33 2332 343 6899999999998875
No 383
>PRK08244 hypothetical protein; Provisional
Probab=97.32 E-value=0.0016 Score=63.31 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--CeE--Eec--CC-cEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILN--DG-TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~v--~~~--~g-~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.|++++.+ ++++++. +++ .+. +| .++++|.||-|.|.++.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 3455556677789999999 4888753 333 343 45 46999999999998875
No 384
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.32 E-value=0.0021 Score=60.52 Aligned_cols=91 Identities=27% Similarity=0.400 Sum_probs=67.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--CCCCC-----Cc---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSS-----FD--------------------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~l~~-----~~--------------------- 283 (351)
+|+|||||++|+-+|..|.+.| .+|+++++. +..+. +.
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 7999999999999999999876 778887775 11100 00
Q ss_pred ----------------------------------HHHHHHHHHHhhhcC-cEEEcC-eEEEEeCC----eEEec-CCcEE
Q 018704 284 ----------------------------------DRLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILN-DGTEV 322 (351)
Q Consensus 284 ----------------------------------~~~~~~~~~~l~~~g-V~~~~~-~v~~v~~~----~v~~~-~g~~~ 322 (351)
..+.+.+.+.+.+.+ |+++.+ +|+.++.+ .++++ ||+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~ 149 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETL 149 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEE
Confidence 123344555555554 899998 48888753 37777 99999
Q ss_pred eccEEEEecCCCCc
Q 018704 323 PYGLLVWSTGVGPS 336 (351)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (351)
.||+||-|=|....
T Consensus 150 ~a~llVgADG~~S~ 163 (387)
T COG0654 150 DADLLVGADGANSA 163 (387)
T ss_pred ecCEEEECCCCchH
Confidence 99999999997665
No 385
>PRK07045 putative monooxygenase; Reviewed
Probab=97.28 E-value=0.0024 Score=60.10 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=37.8
Q ss_pred HHHHHHHHhh-hcCcEEEcCe-EEEEeC--C----eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLS-KSGVRLVRGI-VKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~-~~gV~~~~~~-v~~v~~--~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. ..|++++.+. +++++. + .|.+.+|+++.+|.||-|.|....
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 3444555554 3579999994 888754 2 467788999999999999998875
No 386
>PLN03000 amine oxidase
Probab=97.28 E-value=0.0003 Score=71.43 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
...+|+|||||++||++|..|++.|++|+|+|++++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 45899999999999999999999999999999987653
No 387
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.28 E-value=0.00022 Score=70.57 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
..||+|||||.|||+||..+++. |.+|+|+|+...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 47999999999999999999976 689999997644
No 388
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.27 E-value=0.00025 Score=70.38 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..||||||||.|||+||+.+++. .+|+|+|+..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 47999999999999999999976 8999999764
No 389
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.27 E-value=0.0029 Score=59.62 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++. |++++.+ +++++.. + .|.+.+|.++.+|.||.|.|....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 334455555555 8999988 4888753 3 356678888999999999998775
No 390
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.27 E-value=0.00027 Score=69.41 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||+|.|||+||..+++. .+|+|+|+...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 457999999999999999999886 89999997653
No 391
>PRK06753 hypothetical protein; Provisional
Probab=97.26 E-value=0.0027 Score=59.31 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=29.9
Q ss_pred CcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+++++. |++++. + .+++++|+++++|+||-|-|.+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 35677784 888754 2 466788989999999999997765
No 392
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.26 E-value=0.00078 Score=66.68 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=62.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
..+++|+|||+|++|+-+|..|.+.| .+|+++++.+.+ + .++.+....-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 56789999999999999999998877 789999975322 1 12344445445567788
Q ss_pred CcEEEcCe-E-EEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-V-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v-~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|++++.+. + .++..+. ....+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHH------HHhhCCEEEEeeCCCCC
Confidence 99998884 4 3321111 11248999999998754
No 393
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.25 E-value=0.00031 Score=75.01 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+.||||||+|.|||+||..+++.|.+|+|+|+.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 44689999999999999999999999999999987654
No 394
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.25 E-value=0.0026 Score=51.71 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=26.8
Q ss_pred cEEEcCeEEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 299 VRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 299 V~~~~~~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
|+++..+|+++.. + .+.+.+|..+.+|.||+|+|.
T Consensus 117 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 117 VRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 4444456877764 2 477789999999999999996
No 395
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.25 E-value=0.002 Score=60.35 Aligned_cols=92 Identities=20% Similarity=0.390 Sum_probs=63.3
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--C----------CCc-----------------
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--S----------SFD----------------- 283 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--~----------~~~----------------- 283 (351)
|+|||||++|+-+|..|.+. +.+.+|.++++.... + ..+
T Consensus 2 viIvGaGpAGlslA~~l~~~------------~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA------------RPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc------------CCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 89999999999999999321 123788888764211 0 000
Q ss_pred -----------------HHHHHHHHHHhhhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 -----------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 -----------------~~~~~~~~~~l~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+.+.++.++...|.+++.+ .+++++|+++.++.||-|.|..+.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 12334445555555776666678888764 457889999999999999996544
No 396
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.24 E-value=0.0029 Score=59.50 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=32.4
Q ss_pred cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++++.+. +++++. + .+.+++|.++++|+||.|.|..+.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 368888884 888753 3 567788999999999999998776
No 397
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.23 E-value=0.00043 Score=68.64 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+.++||+|||+|.+|+++|..+++.|.+|+|||+....
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34679999999999999999999999999999987543
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.23 E-value=0.00026 Score=73.68 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||||.|||+||..+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999998753
No 399
>PRK07190 hypothetical protein; Provisional
Probab=97.23 E-value=0.0027 Score=61.59 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+...+.+.+++.|++++.+ +|++++. ++ +.+.+|+++.|+.||.|.|.+..
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 3344556677889999999 4888853 33 45567888999999999998654
No 400
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.21 E-value=0.00053 Score=64.61 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+|+|||||.+|+++|..|++.| .+|++++++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 7999999999999999999877 899999875
No 401
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.21 E-value=0.00023 Score=70.71 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=29.7
Q ss_pred EEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
|||||+|.|||+||..+++.|.+|+|+|+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999876
No 402
>PLN02976 amine oxidase
Probab=97.20 E-value=0.00056 Score=72.27 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..++|+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 4589999999999999999999999999999987664
No 403
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.17 E-value=0.00016 Score=60.11 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~ 97 (351)
..||+|||+|.+||++|+.+++ ..++|.|||..-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 4699999999999999999974 67899999976443
No 404
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.17 E-value=0.00036 Score=68.29 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++||||||||.|||.||..++..|.+|+|+|+...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 458999999999999999999999999999996543
No 405
>PRK08013 oxidoreductase; Provisional
Probab=97.17 E-value=0.0043 Score=58.65 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHhhhc-CcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKS-GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~-gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. ||+++.+. +.+++. + .+.+.+|+++.+|+||-|-|....
T Consensus 115 ~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 115 YALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 3444445553 78999884 887753 3 456678989999999999998765
No 406
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.16 E-value=0.0045 Score=58.64 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=33.9
Q ss_pred HHHhhh-cCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 291 TTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 291 ~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+ .||+++.+ +|++++. + .|.+.+|+++.+|+||-|.|....
T Consensus 118 ~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 118 LEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 333433 47889888 4887743 2 567788999999999999997654
No 407
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.14 E-value=0.00058 Score=60.86 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||+|||+|.|||.||.+|+..|.+|+|+|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 35799999999999999999999999999999654
No 408
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.14 E-value=0.00048 Score=67.25 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
....||||||+|.|||+||..++ +.+|+|+|+...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 34589999999999999999997 569999998765
No 409
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0044 Score=52.25 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=66.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHH-hhh--cCCCCccEEEEEeCCCCCCCC-----cHHHHHHHHHHhhhcCcEEEc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVR-QRY--SHVKDYIHVTLIEANEILSSF-----DDRLRHYATTQLSKSGVRLVR 303 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~-~~~--~~~~~~~~v~~~~~~~~l~~~-----~~~~~~~~~~~l~~~gV~~~~ 303 (351)
+|+|||+|+.|...|..+++.--+.+. +-+ ....++-+++--..-+-.|+| .+++.+.+.++..+.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 899999999999999888763200000 000 001112222211111112333 368889999999999999999
Q ss_pred CeEEEEeCC---eEEecCCcEEeccEEEEecCCCCc
Q 018704 304 GIVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 304 ~~v~~v~~~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+|.+++.. -..+.|.+.+.+|.||+|||....
T Consensus 90 EtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 90 ETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred eehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence 888777653 123346677999999999998766
No 410
>PLN02785 Protein HOTHEAD
Probab=97.09 E-value=0.00063 Score=67.26 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|+||||||.||+.+|.+|++ +.+|+|||+.+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 45999999999999999999999 689999999864
No 411
>PRK09897 hypothetical protein; Provisional
Probab=97.09 E-value=0.0065 Score=59.30 Aligned_cols=41 Identities=22% Similarity=0.176 Sum_probs=28.5
Q ss_pred hcC--cEEEcC-eEEEEeC--Ce--EEecC-CcEEeccEEEEecCCCCc
Q 018704 296 KSG--VRLVRG-IVKDVDS--QK--LILND-GTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~g--V~~~~~-~v~~v~~--~~--v~~~~-g~~~~~D~vi~a~G~~p~ 336 (351)
+.| ++++.+ +|++++. ++ +.+.+ |..+.+|.||+|+|..+.
T Consensus 119 ~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 119 QQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 445 677777 5888854 33 34444 467899999999997543
No 412
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0073 Score=57.82 Aligned_cols=91 Identities=21% Similarity=0.338 Sum_probs=61.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC-CC----------------------CC--C--
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE-IL----------------------SS--F-- 282 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~l----------------------~~--~-- 282 (351)
.+|+|||||.+|+-+|..|.+.+ .. +.+++++. +- +. +
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 38999999999999999999887 44 77777752 10 00 1
Q ss_pred ----c--HHHHHHHHHHhhhcCcEEEcC-----eEEEEeCC----eEEecCCcE--EeccEEEEecCCCC
Q 018704 283 ----D--DRLRHYATTQLSKSGVRLVRG-----IVKDVDSQ----KLILNDGTE--VPYGLLVWSTGVGP 335 (351)
Q Consensus 283 ----~--~~~~~~~~~~l~~~gV~~~~~-----~v~~v~~~----~v~~~~g~~--~~~D~vi~a~G~~p 335 (351)
+ ..+..++.+++++.++..... ++...+.+ .|++++|.+ +.+|.||+|||+-.
T Consensus 75 ~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 75 DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred cccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 1 125677777777776654432 23333332 577777765 45999999999743
No 413
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.08 E-value=0.0044 Score=65.33 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=63.6
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------CCc-HHHHHHHHHHhhhc
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------SFD-DRLRHYATTQLSKS 297 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-----------~~~-~~~~~~~~~~l~~~ 297 (351)
.++|+|||||+.|+..|..+.+.+ .+|++++....+. ..+ .+....+.+.+...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 358999999999999999998876 8999999853211 111 23334455555555
Q ss_pred -CcEEEcCe-EEEEeCCe-EEe----c-------CC------cEEeccEEEEecCCCCc
Q 018704 298 -GVRLVRGI-VKDVDSQK-LIL----N-------DG------TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 -gV~~~~~~-v~~v~~~~-v~~----~-------~g------~~~~~D~vi~a~G~~p~ 336 (351)
+|+++.++ |..+.... +.. . ++ .++.+|.||+|||..+.
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 59999884 77765421 110 0 11 15889999999998876
No 414
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.08 E-value=0.0013 Score=60.62 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~ 97 (351)
...++|+|||||.++..++..|.+.+ .+|+++-+...+
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 34579999999999999999998865 489999877544
No 415
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.06 E-value=0.008 Score=56.35 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=38.3
Q ss_pred HHHHHHHHhhh-cCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .|++++.+ +|++++. + .+.+++|.++.+|.||.|.|....
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 44555566666 49999988 4888853 3 366678888999999999997754
No 416
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00072 Score=66.35 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|+||||+|.+|..+|.+|++.|++|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999998754
No 417
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.05 E-value=0.006 Score=57.68 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHHhhh-cCcEEEcCe-EEEEeC--Ce--EEe---cCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRGI-VKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~~-v~~v~~--~~--v~~---~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .+++++.+. |++++. ++ +++ .+++++++|+||-|-|....
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 34445555544 479999994 888854 33 334 33457999999999998765
No 418
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.009 Score=50.42 Aligned_cols=91 Identities=21% Similarity=0.357 Sum_probs=61.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------CCC--Cc--------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------LSS--FD-------------------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------l~~--~~-------------------- 283 (351)
.|+|||+|++|+-+|.+|++.+ .+|.+++|+-. +.+ |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 8999999999999999999876 99999999621 111 11
Q ss_pred -----------HHHHHHHHHHhhhcCcEEEcCe-EEEEe--CC----eEEec-----------CCcEEeccEEEEecCCC
Q 018704 284 -----------DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~----~v~~~-----------~g~~~~~D~vi~a~G~~ 334 (351)
.++...+....-+.|.++..+. |.++. ++ +++++ |--.++++.||=|||+.
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 1112222223335578888773 66652 22 33332 33468899999999998
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 178 a~ 179 (262)
T COG1635 178 AE 179 (262)
T ss_pred hH
Confidence 77
No 419
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.03 E-value=0.0059 Score=57.39 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+. ++. +.+ +|.+++. + .+.+++|+++.+|.||.|.|....
T Consensus 114 ~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 114 NRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 34444455554 455 556 4777743 3 356678888999999999998765
No 420
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.03 E-value=0.00059 Score=67.06 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.7
Q ss_pred cEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
|+||||||.||+.+|.+|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999988 79999999864
No 421
>PRK10015 oxidoreductase; Provisional
Probab=96.99 E-value=0.0065 Score=58.02 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--CeEE--ecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~v~--~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.|++++.+ +|+++.. +++. ..++.++.||.||.|.|....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSM 165 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchh
Confidence 3345666777889999999 4877643 3433 234567999999999997543
No 422
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.0012 Score=62.70 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=61.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C---CC---CC---------------Cc------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E---IL---SS---------------FD------ 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~l---~~---------------~~------ 283 (351)
.|+|||||..|+|.|...+++| .++.++.-+ + .+ |. ++
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG--------------~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~ 71 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMG--------------AKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKA 71 (621)
T ss_pred ceEEECCCccchHHHHhhhccC--------------CeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHh
Confidence 7999999999999999999987 666666543 1 11 10 01
Q ss_pred ---------------------------HH-HHHHHHHHhh-hcCcEEEcCeEEEEeC------CeEEecCCcEEeccEEE
Q 018704 284 ---------------------------DR-LRHYATTQLS-KSGVRLVRGIVKDVDS------QKLILNDGTEVPYGLLV 328 (351)
Q Consensus 284 ---------------------------~~-~~~~~~~~l~-~~gV~~~~~~v~~v~~------~~v~~~~g~~~~~D~vi 328 (351)
.. ....+++.++ ..++.++.++|.++.. .+|++.+|..+.|+.||
T Consensus 72 ~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV 151 (621)
T COG0445 72 ADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVV 151 (621)
T ss_pred hhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEE
Confidence 01 1122333333 3478888886665432 37889999999999999
Q ss_pred EecCCCCc
Q 018704 329 WSTGVGPS 336 (351)
Q Consensus 329 ~a~G~~p~ 336 (351)
++||.--.
T Consensus 152 lTTGTFL~ 159 (621)
T COG0445 152 LTTGTFLR 159 (621)
T ss_pred Eeeccccc
Confidence 99996444
No 423
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.97 E-value=0.0043 Score=56.92 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|+.||..|.-|++.|++|+++|-++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999997653
No 424
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.97 E-value=0.0091 Score=56.21 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHhhh-cCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 291 TTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 291 ~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+ .|++++.+ +++++.. + .+.+.+|..+.+|.||.|.|.+..
T Consensus 119 ~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 119 FALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 333433 47888888 4877753 3 356678888999999999998765
No 425
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.92 E-value=0.0089 Score=56.28 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=33.7
Q ss_pred HHHHHHhhhcCcEEEcCeEEEEeC--C--eEEecC------C--cEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGIVKDVDS--Q--KLILND------G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~v~~v~~--~--~v~~~~------g--~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.|++++.++++++.. + .+.+.+ | .++.+|.||-|.|....
T Consensus 96 ~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 96 SYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 445556667799998777777643 2 344442 2 36899999999997654
No 426
>PRK06185 hypothetical protein; Provisional
Probab=96.91 E-value=0.0097 Score=56.35 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHHHHhhh-cCcEEEcC-eEEEEeC--Ce---EEe--cCCc-EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LIL--NDGT-EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~-~v~~v~~--~~---v~~--~~g~-~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .|++++.+ ++.++.. +. +.+ .+|+ ++.+|.||.|.|....
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 34455555554 48999988 4887743 32 333 3564 6999999999998764
No 427
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.90 E-value=0.0047 Score=57.03 Aligned_cols=96 Identities=21% Similarity=0.304 Sum_probs=64.5
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC------CCCCC------cHHHHHHHHHHhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE------ILSSF------DDRLRHYATTQLS 295 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~l~~~------~~~~~~~~~~~l~ 295 (351)
.+.|+|+|+|+|-.|+-++..|.... .+|+++.++. ++|.. -..+.+-+.....
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~--------------YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r 118 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSL--------------YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIAR 118 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccc--------------cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhh
Confidence 34469999999999999988776543 7899998874 23221 2345555544444
Q ss_pred hc--CcEEEcCeEEEEeC--CeEEe----cCC----cEEeccEEEEecCCCCcc
Q 018704 296 KS--GVRLVRGIVKDVDS--QKLIL----NDG----TEVPYGLLVWSTGVGPST 337 (351)
Q Consensus 296 ~~--gV~~~~~~v~~v~~--~~v~~----~~g----~~~~~D~vi~a~G~~p~~ 337 (351)
.. +++++..+-..++. ..|.. +++ -.+.+|.+|+|+|..++.
T Consensus 119 ~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 119 KKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred ccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 33 67787776555544 33333 344 358899999999999983
No 428
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.88 E-value=0.0079 Score=57.21 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=61.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC-----C------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-----S------------------------ 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l-----~------------------------ 280 (351)
++|+|||+|++|+-.|..|.+.| .++++++|.+ +. .
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~ 72 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMG 72 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhc
Confidence 59999999999999999998865 7788877742 10 0
Q ss_pred --CC----------c--HHHHHHHHHHhhhcCcE--EEcC-eEEEEeC-----CeEEecCC----cEEeccEEEEecCCC
Q 018704 281 --SF----------D--DRLRHYATTQLSKSGVR--LVRG-IVKDVDS-----QKLILNDG----TEVPYGLLVWSTGVG 334 (351)
Q Consensus 281 --~~----------~--~~~~~~~~~~l~~~gV~--~~~~-~v~~v~~-----~~v~~~~g----~~~~~D~vi~a~G~~ 334 (351)
.+ + .++.++++.++++-++. +..+ +|..++. -.|.+.++ ++.-+|.|++|+|.-
T Consensus 73 ~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 73 YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 00 0 14566777777777753 3344 2444432 25666543 345699999999976
Q ss_pred --Cc
Q 018704 335 --PS 336 (351)
Q Consensus 335 --p~ 336 (351)
|+
T Consensus 153 ~~P~ 156 (448)
T KOG1399|consen 153 VEPR 156 (448)
T ss_pred CCCC
Confidence 55
No 429
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.85 E-value=0.011 Score=55.85 Aligned_cols=48 Identities=17% Similarity=0.396 Sum_probs=32.5
Q ss_pred HHHHHhhhcCcEEEcCeEEEEeC-----C--eEEe--cC-----C--cEEeccEEEEecCCCCc
Q 018704 289 YATTQLSKSGVRLVRGIVKDVDS-----Q--KLIL--ND-----G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 289 ~~~~~l~~~gV~~~~~~v~~v~~-----~--~v~~--~~-----g--~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.|++++.+++.++.. + +|.+ .+ | .++++|.||-|.|..+.
T Consensus 98 ~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 98 FLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred HHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchH
Confidence 45555677899999887665531 1 3433 11 3 36899999999997665
No 430
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.83 E-value=0.01 Score=58.38 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHHHHHhhh-cCcEEEcC-eEEEEeC--Ce--EEec--CC--cEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK--LILN--DG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~-~v~~v~~--~~--v~~~--~g--~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .|++++.+ ++++++. ++ +.++ +| .++.+|.||-|.|....
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 33445555555 48999999 5888864 33 4444 56 46899999999998765
No 431
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.83 E-value=0.011 Score=55.42 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=33.4
Q ss_pred HHHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+. +++++.+ +++++.. + .+.+.++ ++.+|+||-|-|....
T Consensus 107 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 107 KKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 34444444454 4888888 4777643 2 4566665 8999999999998766
No 432
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.82 E-value=0.0098 Score=56.51 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=28.9
Q ss_pred cEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.++.+ +|++++. + .+.+++|.++++|.||.|.|.+..
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 456667 4777753 2 466788989999999999997765
No 433
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0048 Score=57.70 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.4
Q ss_pred CcEEEcCeEEEEe---C-------CeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGIVKDVD---S-------QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~---~-------~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+..+..+.|.++. + .+|++.||..+.++.||+.||.--.
T Consensus 139 nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~ 187 (679)
T KOG2311|consen 139 NLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLR 187 (679)
T ss_pred cchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeecccee
Confidence 5667777665542 1 3789999999999999999995433
No 434
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.72 E-value=0.017 Score=55.30 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=36.3
Q ss_pred HHHHHHhhhc---CcEEEcC-eEEEEe---------CC--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKS---GVRLVRG-IVKDVD---------SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~---gV~~~~~-~v~~v~---------~~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. +++++.+ ++.+++ .+ .+.+.+|+++.+|+||-|-|....
T Consensus 121 ~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 121 NSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 3344455554 4999999 488874 12 566788999999999999998766
No 435
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.71 E-value=0.01 Score=58.58 Aligned_cols=94 Identities=23% Similarity=0.374 Sum_probs=67.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-------CCC-CCc-----HHHHHHHHHHhhhcC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-------ILS-SFD-----DRLRHYATTQLSKSG 298 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~l~-~~~-----~~~~~~~~~~l~~~g 298 (351)
+++|||.|..|.-+..++.+.. +.-.++|++-..+ .++ .+. .++...-.+-.+++|
T Consensus 5 klvvvGnGmag~r~iEell~~~-----------~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESA-----------PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred eEEEEecccchhhHHHHHHhcC-----------cccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcC
Confidence 8999999999999998887743 2336778775431 111 111 122222234467889
Q ss_pred cEEEcCe-EEEEeCC--eEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGI-VKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++ +..++.+ .|+.++|.++.+|-+|+|||..|.
T Consensus 74 i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred cEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 9999996 9888763 677788999999999999998887
No 436
>PRK06996 hypothetical protein; Provisional
Probab=96.71 E-value=0.015 Score=54.96 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEecCC---cEEeccEEEEecCCC
Q 018704 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG---TEVPYGLLVWSTGVG 334 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~~~g---~~~~~D~vi~a~G~~ 334 (351)
.+.+.+.+.+.+.|++++.+ ++.+++. ++ +.+.+| +++.+|+||-|-|..
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCC
Confidence 45566777778889999999 4877754 34 444543 579999999999954
No 437
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.70 E-value=0.015 Score=54.88 Aligned_cols=99 Identities=23% Similarity=0.402 Sum_probs=65.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----C--------------CCc---------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----S--------------SFD--------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l-----~--------------~~~--------- 283 (351)
.|+|||+|++|.-+|..|++.| .+|.++++.... . ...
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 7999999999999999999876 677777764210 0 000
Q ss_pred ------------------------HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE---EecCCcEEeccEEEEecCC
Q 018704 284 ------------------------DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL---ILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 284 ------------------------~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v---~~~~g~~~~~D~vi~a~G~ 333 (351)
..+-+++.+..++.|++++.+. ++.+.. +++ +..++.++.++.||.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 1223445566677889999884 776652 222 2233468999999999996
Q ss_pred CCccccccCCCC
Q 018704 334 GPSTLVKSLDLP 345 (351)
Q Consensus 334 ~p~~~~~~~gl~ 345 (351)
... +.+.+|+.
T Consensus 151 ~s~-l~~~lg~~ 161 (396)
T COG0644 151 NSA-LARKLGLK 161 (396)
T ss_pred chH-HHHHhCCC
Confidence 554 33344443
No 438
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.69 E-value=0.011 Score=55.69 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=29.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhc--cCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~ 94 (351)
..+|||+||||+.|.+.+..|++ ...+|.|+|+-
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl 37 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERL 37 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 35899999999999999999998 56789999943
No 439
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.68 E-value=0.02 Score=54.97 Aligned_cols=49 Identities=12% Similarity=0.333 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCcEEEcCeEEEEeC-----C--eEEecC-------C--cEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGIVKDVDS-----Q--KLILND-------G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~v~~v~~-----~--~v~~~~-------g--~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.|++++.+.+++++. + .+.+.+ | .++++|.||-|.|....
T Consensus 136 ~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 136 SFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred HHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchH
Confidence 345555667799998877666641 2 244432 3 47999999999997654
No 440
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.68 E-value=0.017 Score=57.12 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhc-CcEEEcCe-EEEEeC--CeE--Ee--cCCc-EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKS-GVRLVRGI-VKDVDS--QKL--IL--NDGT-EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~-gV~~~~~~-v~~v~~--~~v--~~--~~g~-~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+. +++++.+. +++++. +++ .+ .+|. ++.+|.||.|.|....
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 334455555554 79999994 888864 333 33 3454 6899999999998776
No 441
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.63 E-value=0.003 Score=53.75 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEE
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~ 308 (351)
.+++|+|||||.+|..-+..|.+.| .+|+++.+. +.++ +.+..++.+|+++.+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~----l~~l~~~~~i~~~~~~~~~ 64 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESE----LTLLAEQGGITWLARCFDA 64 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHH----HHHHHHcCCEEEEeCCCCH
Confidence 3469999999999999999999877 899999753 1223 2333344456665543210
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCC
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
+.--.+|.||.|||-.
T Consensus 65 ----------~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 65 ----------DILEGAFLVIAATDDE 80 (205)
T ss_pred ----------HHhCCcEEEEECCCCH
Confidence 1111377888888775
No 442
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.62 E-value=0.026 Score=53.19 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=34.9
Q ss_pred HHHHHHhhhcCcEEEcCe-EEEEeC---C--eEEe-cCCc--EEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGI-VKDVDS---Q--KLIL-NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~-v~~v~~---~--~v~~-~~g~--~~~~D~vi~a~G~~p~ 336 (351)
+.+.+...+.|++++.+. +++++. + .|.+ .+|+ ++.+|+||-|-|....
T Consensus 107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 344444566789999994 777753 2 4566 4664 5899999999998765
No 443
>PLN02661 Putative thiazole synthesis
Probab=96.61 E-value=0.025 Score=51.89 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|.+|+-+|..|++. ++.+|+++++.
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~ 125 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQS 125 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecC
Confidence 899999999999999999853 12788888885
No 444
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.54 E-value=0.0032 Score=47.27 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+..+|+|||||..|..-+..|.+.|.+|+|+.++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35799999999999999999999999999999854
No 445
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.51 E-value=0.04 Score=46.69 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=55.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------CC--Cc--------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------SS--FD-------------------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------~~--~~-------------------- 283 (351)
.|+|||+|++|+-+|..|++.+ .+|.+++++... .. |+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 8999999999999999999887 999999986311 10 10
Q ss_pred -----------HHHHHHHHHHhhhcCcEEEcCe-EEEEe--C-C---eEEec-----------CCcEEeccEEEEecCCC
Q 018704 284 -----------DRLRHYATTQLSKSGVRLVRGI-VKDVD--S-Q---KLILN-----------DGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~-~---~v~~~-----------~g~~~~~D~vi~a~G~~ 334 (351)
.++...+....-+.|+++.... |.++- + + +++++ |--.+++..||=|||+.
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 1122333333345889998884 76652 2 2 33332 22468999999999998
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 165 a~ 166 (230)
T PF01946_consen 165 AE 166 (230)
T ss_dssp SS
T ss_pred hH
Confidence 76
No 446
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.49 E-value=0.023 Score=55.46 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEe--cCC--cEEeccEEEEecC-CCCc-cccc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLIL--NDG--TEVPYGLLVWSTG-VGPS-TLVK 340 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~--~~g--~~~~~D~vi~a~G-~~p~-~~~~ 340 (351)
.+...+.+.+++.||+++++. ++++.. + ++.+ .+| ..+.+|.||+|+| +..+ ++++
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHH
Confidence 345556666778899999984 877753 2 2444 333 3588999999997 6666 4444
No 447
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.49 E-value=0.0048 Score=57.82 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=49.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC--------CcH------HHHHHHHHHhhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FDD------RLRHYATTQLSK 296 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~--------~~~------~~~~~~~~~l~~ 296 (351)
++++|||||.+|++.|.+|++.| .+|+++++.+.+.+ |+. -+...+.+.-..
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~h 190 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNH 190 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccC
Confidence 69999999999999999999988 99999999754322 221 123344445556
Q ss_pred cCcEEEcC-eEEEEeC
Q 018704 297 SGVRLVRG-IVKDVDS 311 (351)
Q Consensus 297 ~gV~~~~~-~v~~v~~ 311 (351)
.+|++++. +|+++.+
T Consensus 191 p~i~l~TyaeV~ev~G 206 (622)
T COG1148 191 PNIELITYAEVEEVSG 206 (622)
T ss_pred Cceeeeeeeeeeeecc
Confidence 68999988 4887643
No 448
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.48 E-value=0.0017 Score=62.17 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=28.3
Q ss_pred EECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 67 IIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
|||+|.+||+||..+++.|.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999998764
No 449
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.47 E-value=0.0076 Score=52.11 Aligned_cols=90 Identities=26% Similarity=0.300 Sum_probs=59.2
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEE-----c----
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLV-----R---- 303 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~-----~---- 303 (351)
.+|||||..|+-+|..|+.+. +..++.++..+.+... -.-.+.+.+++++-.|+=- .
T Consensus 2 fivvgggiagvscaeqla~~~------------psa~illitass~vks--vtn~~~i~~ylekfdv~eq~~~elg~~f~ 67 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKS--VTNYQKIGQYLEKFDVKEQNCHELGPDFR 67 (334)
T ss_pred eEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHH--HhhHHHHHHHHHhcCccccchhhhcccHH
Confidence 689999999999999998753 3468888887653321 1222333344443333211 0
Q ss_pred ---CeEEEEe--CCeEEecCCcEEeccEEEEecCCCCc
Q 018704 304 ---GIVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 304 ---~~v~~v~--~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|+..+ +.-+++++|.++.++.+++|+|++|-
T Consensus 68 ~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 68 RFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc
Confidence 1122221 24789999999999999999999998
No 450
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.43 E-value=0.0029 Score=58.70 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC-----CeEEecCCcEEeccEEEEecC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~-----~~v~~~~g~~~~~D~vi~a~G 332 (351)
..++..+.+-+++.|-++.+.. |.+|.- .+|.++||+++.+..|+--++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCc
Confidence 3567778888899999999984 888753 389999999999977766554
No 451
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.42 E-value=0.0021 Score=57.09 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=63.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CCCCC---cHHHHHHHH-----HHhhhcCcE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---ILSSF---DDRLRHYAT-----TQLSKSGVR 300 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~l~~~---~~~~~~~~~-----~~l~~~gV~ 300 (351)
+|+|||||.-|+.+|..+.+.. ..-+|.+++..+ ..|.+ +..+...-. ..+.-.|.+
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl------------~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~ 108 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKL------------GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGAT 108 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhc------------CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcH
Confidence 8999999999999998887643 226788888753 22221 111111100 001111233
Q ss_pred EEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc-cccccC
Q 018704 301 LVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSL 342 (351)
Q Consensus 301 ~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~ 342 (351)
.+...|+++++ +.|.+.+|++|.+|.+|+|.|..-+ ..++.+
T Consensus 109 wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 109 WIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred HHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence 33334677765 5899999999999999999998777 555554
No 452
>PRK11445 putative oxidoreductase; Provisional
Probab=96.42 E-value=0.045 Score=50.77 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.7
Q ss_pred hcCcEEEcCe-EEEEeC--Ce--EEe-cCCc--EEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVDS--QK--LIL-NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~~--v~~-~~g~--~~~~D~vi~a~G~~p~ 336 (351)
..||+++.+. +++++. ++ +.+ .+|+ ++.+|.||.|.|....
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 4679999984 777753 33 343 4664 6899999999998654
No 453
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.36 E-value=0.0068 Score=58.99 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=34.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~~ 97 (351)
...+|.+|||||.||...|.+|.+ ..++|+|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 456999999999999999999998 57899999988765
No 454
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.028 Score=53.08 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEEECCChHHHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~ 252 (351)
+|+|||||.+|+.+|..|.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred eEEEECCchHHHHHHHHHHhC
Confidence 899999999999999999864
No 455
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.34 E-value=0.0042 Score=50.51 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=30.4
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+|+|||||..|.++|..|++.|.+|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999876
No 456
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.34 E-value=0.0041 Score=59.36 Aligned_cols=98 Identities=30% Similarity=0.414 Sum_probs=26.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC---------C--------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS---------F-------------------- 282 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~---------~-------------------- 282 (351)
.|+|||||..|+-.|..+++.| .+|.++++...+.+ +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~ 66 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR 66 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH
Confidence 3899999999999999999987 89999998653311 0
Q ss_pred ---------------------cHH-HHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecC---CcEEeccEEEEec
Q 018704 283 ---------------------DDR-LRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILND---GTEVPYGLLVWST 331 (351)
Q Consensus 283 ---------------------~~~-~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~---g~~~~~D~vi~a~ 331 (351)
+++ ....+.+.+.+.||+++.++ |.++..+ +|++.+ ..++.|+.||=||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaT 146 (428)
T PF12831_consen 67 LRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDAT 146 (428)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 01122334556788888885 7766532 455543 3568999999999
Q ss_pred CCCCccccccCCCC
Q 018704 332 GVGPSTLVKSLDLP 345 (351)
Q Consensus 332 G~~p~~~~~~~gl~ 345 (351)
|- . .++...|++
T Consensus 147 G~-g-~l~~~aG~~ 158 (428)
T PF12831_consen 147 GD-G-DLAALAGAP 158 (428)
T ss_dssp --------------
T ss_pred cc-c-ccccccccc
Confidence 93 2 344444444
No 457
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.29 E-value=0.0063 Score=51.79 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|+|||||.+|+.-|..|.+.|.+|+|++++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 46899999999999999999999999999998643
No 458
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.26 E-value=0.04 Score=51.96 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHhhhcCcEEEcCe-EEEEeC-----CeEEec-CCc--EEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGI-VKDVDS-----QKLILN-DGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~-v~~v~~-----~~v~~~-~g~--~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.|+.++.+. ++.+.. ..|.+. +|+ ++++|+||-|-|....
T Consensus 107 ~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 107 RDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 334445556678888773 555421 367775 775 6899999999997765
No 459
>PLN02985 squalene monooxygenase
Probab=96.26 E-value=0.046 Score=53.47 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhc-CcEEEcCeEEEEeC--C---eEEe--cCCcE--EeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKS-GVRLVRGIVKDVDS--Q---KLIL--NDGTE--VPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~-gV~~~~~~v~~v~~--~---~v~~--~~g~~--~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+. +|+++.++++++.. + +|++ .+|++ +.+|+||.|.|....
T Consensus 149 l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 149 FVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence 344455555444 78888887665532 2 3554 35654 568999999998766
No 460
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.015 Score=55.94 Aligned_cols=80 Identities=29% Similarity=0.318 Sum_probs=56.9
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEE
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v 309 (351)
.|+++|+|+|.+|+.+|..|+..| .+|+++++... ..+ +...+.+...|++++.+....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE-----DQL-KEALEELGELGIELVLGEYPE- 63 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-----HHH-HHHHHHHHhcCCEEEeCCcch-
Confidence 469999999999999999999887 89999988531 122 222344566688877664322
Q ss_pred eCCeEEecCCcEEeccEEEEecCCCCc-ccc
Q 018704 310 DSQKLILNDGTEVPYGLLVWSTGVGPS-TLV 339 (351)
Q Consensus 310 ~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~ 339 (351)
...-.+|.||.++|..++ +++
T Consensus 64 ---------~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 64 ---------EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ---------hHhhcCCEEEECCCCCCCCHHH
Confidence 111248999999999887 544
No 461
>PRK06126 hypothetical protein; Provisional
Probab=96.23 E-value=0.031 Score=55.13 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHHHHhhh-cCcEEEcCe-EEEEeC--Ce--EEe---cCCc--EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRGI-VKDVDS--QK--LIL---NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~~-v~~v~~--~~--v~~---~~g~--~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++ .+++++++. +++++. ++ +.+ .+|+ ++.+|.||.|.|.+..
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 33445555554 489999994 888864 33 333 3454 6899999999998765
No 462
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.22 E-value=0.01 Score=53.42 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-E
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (351)
..+++++|||||+.++..|--++..|.++-++=+++... +.+.+.+++.........++++.. .
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL---------------R~FD~~i~~~v~~~~~~~ginvh~~s 251 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL---------------RGFDEMISDLVTEHLEGRGINVHKNS 251 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh---------------cchhHHHHHHHHHHhhhcceeecccc
Confidence 346899999999999999999999999988887766531 112223333333333444666554 2
Q ss_pred EeeeEeCCCCE-EEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 139 HCAGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 139 ~v~~i~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.++.+...... ..+.+ +.+. ....|.|+-|+|..|+.-.
T Consensus 252 ~~~~v~K~~~g~~~~i~-~~~~--------i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 252 SVTKVIKTDDGLELVIT-SHGT--------IEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred cceeeeecCCCceEEEE-eccc--------cccccEEEEEecCCCCccc
Confidence 44444333222 22211 3444 5669999999999888764
No 463
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.0044 Score=55.31 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
...|-|||||.||-.||++++++|..|.++|-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR 35 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence 467999999999999999999999999999944
No 464
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.19 E-value=0.01 Score=54.62 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=65.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhc----cCceE-EEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDV-VCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~----~g~~v-~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
.+..|.|||.|+-|-..|..|.+ .|.+| -||+.+..+. .-+.+++.++--+-.+..++.+
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------kiLPeyls~wt~ekir~~GV~V 410 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------KILPEYLSQWTIEKIRKGGVDV 410 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------hhhHHHHHHHHHHHHHhcCcee
Confidence 34789999999999888888865 46665 4555433221 0011222222222334456766
Q ss_pred EE-EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 136 FL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 136 ~~-~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+. ..|.++....+.+.+. +++|. ++..|.||+|+|..|+..
T Consensus 411 ~pna~v~sv~~~~~nl~lk-L~dG~--------~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 411 RPNAKVESVRKCCKNLVLK-LSDGS--------ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred ccchhhhhhhhhccceEEE-ecCCC--------eeeeeeEEEEecCCCchh
Confidence 65 4677777777766663 47787 999999999999998864
No 465
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.14 E-value=0.0085 Score=48.68 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
...+|+|||||..|+.-|..|.+.|.+|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3578999999999999999999999999999754
No 466
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0058 Score=52.84 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=31.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++++|||+|..|.+.|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999764
No 467
>PRK07538 hypothetical protein; Provisional
Probab=96.10 E-value=0.047 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEECCChHHHHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFI 253 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~ 253 (351)
+|+|||||..|+-+|..|.+.|
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G 23 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG 23 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCC
Confidence 7999999999999999998754
No 468
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.07 E-value=0.0068 Score=50.51 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999765
No 469
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.02 E-value=0.0061 Score=51.02 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|..||..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998765
No 470
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.029 Score=50.64 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=69.6
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHH--HHhhhcCCCCccEEE--E-EeCC-CCCCCCcHHHHHHHHHHhhhcCcEE
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRD--VRQRYSHVKDYIHVT--L-IEAN-EILSSFDDRLRHYATTQLSKSGVRL 301 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~--~~~~~~~~~~~~~v~--~-~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~ 301 (351)
+..-.|+|||||+.|.-.|-+.++.|-+. +.++|. -+|- + ++.- .......+.+...+++++++..|.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-----GQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDi 283 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-----GQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDV 283 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-----CeeccccchhheeccccccchHHHHHHHHHHhhcCchh
Confidence 44458999999999999999988876211 111221 1110 0 0000 0112345788999999999999998
Q ss_pred EcCe-EEEEeC-------CeEEecCCcEEeccEEEEecCCC
Q 018704 302 VRGI-VKDVDS-------QKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 302 ~~~~-v~~v~~-------~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
+... .+.+++ -.|++++|-.+++..+|++||.+
T Consensus 284 mn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 284 MNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 8873 555543 26889999999999999999965
No 471
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.04 Score=50.30 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=58.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC---------CCCCc--HHHHHHHHHHhhhcCcE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---------LSSFD--DRLRHYATTQLSKSGVR 300 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------l~~~~--~~~~~~~~~~l~~~gV~ 300 (351)
+|+|||+|+.|+=.|..|.+. .++.+|++++..+. .|+.+ +.+.+.+.+.+++....
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~------------~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKR------------HPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred eEEEECCCchHHHHHHHHHhc------------CCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceE
Confidence 899999999999998888752 13489999998642 23222 34566677777777777
Q ss_pred EEcC-eEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 301 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 301 ~~~~-~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+..| .| ++-+.+.+ -+-.+|+||+|.|....
T Consensus 90 f~gNv~v----G~dvsl~e-L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 90 FFGNVKV----GRDVSLKE-LTDNYDAVVLAYGADGD 121 (468)
T ss_pred EEeccee----cccccHHH-HhhcccEEEEEecCCCC
Confidence 7666 23 11122221 12358899999987655
No 472
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.94 E-value=0.008 Score=57.96 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=31.2
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+|+|||.|++|+++|..|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999987643
No 473
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.89 E-value=0.018 Score=48.86 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (351)
.+++|+|||||.+|...+..|...+ .+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcC
Confidence 3469999999999999999998766 88999965
No 474
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.88 E-value=0.0041 Score=58.99 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=34.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
....||+|||||..|-.||...+.+|+++.++|.++.-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 45689999999999999999999999999999977543
No 475
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.88 E-value=0.11 Score=50.21 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhcCcEEEcCeEEEEe--CCe---EEecCCcEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGIVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~v~~v~--~~~---v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.||+++.+.++.+. ++. +.. +|..+.+|.||+|||-...
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 34455555666778888776555543 222 333 5667899999999997766
No 476
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.87 E-value=0.017 Score=49.55 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=37.3
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~ 304 (351)
+.++|+|||||.+|..=+..|.+.+ .+|+++-+. +.+++ .+..+...|+++..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap~-----i~~el----~~l~~~~~i~~~~r 76 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSKK-----FSKEF----LDLKKYGNLKLIKG 76 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcCC-----CCHHH----HHHHhCCCEEEEeC
Confidence 3469999999999999888888876 899999642 22333 33344456666553
No 477
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.85 E-value=0.0083 Score=55.19 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhc----cCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~ 94 (351)
..+|||||||||+|++.|..|.. ...+|+|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 36899999999999999999975 45689999965
No 478
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.83 E-value=0.034 Score=44.64 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=49.0
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 311 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~ 311 (351)
|+|+|+|.+|+-+|..|...+ .+|+++.|. . ..+.+++.|+.+.... -..+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~--------~----~~~~~~~~g~~~~~~~~~~~~~- 53 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRS--------P----RLEAIKEQGLTITGPDGDETVQ- 53 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESH--------H----HHHHHHHHCEEEEETTEEEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEcc--------c----cHHhhhheeEEEEecccceecc-
Confidence 689999999999999998866 899999883 1 2234677788887764 11111
Q ss_pred CeEEecCC--cEEeccEEEEecCCC
Q 018704 312 QKLILNDG--TEVPYGLLVWSTGVG 334 (351)
Q Consensus 312 ~~v~~~~g--~~~~~D~vi~a~G~~ 334 (351)
......+. ..-++|.||+|+=..
T Consensus 54 ~~~~~~~~~~~~~~~D~viv~vKa~ 78 (151)
T PF02558_consen 54 PPIVISAPSADAGPYDLVIVAVKAY 78 (151)
T ss_dssp EEEEESSHGHHHSTESEEEE-SSGG
T ss_pred cccccCcchhccCCCcEEEEEeccc
Confidence 11222221 234689999997543
No 479
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.035 Score=53.37 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=55.7
Q ss_pred cccCeEEEECC-ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeE
Q 018704 228 SRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIV 306 (351)
Q Consensus 228 ~~~~~v~VvGg-G~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v 306 (351)
-++|+|.|-|| |-+|-+++..+++.++ .++.++.+++..- ..+...+.+......++.+.|.|
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p-------------~~i~l~~~~E~~~---~~i~~el~~~~~~~~~~~~igdV 311 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNP-------------KEIILFSRDEYKL---YLIDMELREKFPELKLRFYIGDV 311 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCC-------------CEEEEecCchHHH---HHHHHHHHhhCCCcceEEEeccc
Confidence 35589999886 5689999999988653 7888998874210 12222222222223444444444
Q ss_pred EEEeCCeEEecCCcEEeccEEEEecCCCCcccccc
Q 018704 307 KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKS 341 (351)
Q Consensus 307 ~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~ 341 (351)
.+.+. +.-. =+.+..|.|+.|.-++.-|+++.
T Consensus 312 rD~~~--~~~~-~~~~kvd~VfHAAA~KHVPl~E~ 343 (588)
T COG1086 312 RDRDR--VERA-MEGHKVDIVFHAAALKHVPLVEY 343 (588)
T ss_pred ccHHH--HHHH-HhcCCCceEEEhhhhccCcchhc
Confidence 32211 1000 02366899999998887665554
No 480
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.77 E-value=0.014 Score=49.48 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
..++|+|||||-.|...|..|.+.|.+|+|++++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3479999999999999999999999999999874
No 481
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.013 Score=56.26 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|||+|.+|+++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999864
No 482
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.63 E-value=0.038 Score=56.82 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=28.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|+|||||+.|+-+|..|.+.+ ++.+|+++++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCC
Confidence 7999999999999999998761 127888888864
No 483
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.46 E-value=0.078 Score=49.07 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+|+|||||..|+-.|..|.+.| .+|.+++.+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~~ 34 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKG--------------IDVVVLESR 34 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeec
Confidence 8999999999999999999987 888888775
No 484
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.43 E-value=0.019 Score=47.27 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=29.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.+|+|+|+|.+|..||..|...|.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34799999999999999999999999999999754
No 485
>PRK04148 hypothetical protein; Provisional
Probab=95.41 E-value=0.018 Score=45.14 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 999999999999999999998765
No 486
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.35 E-value=0.031 Score=38.32 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.4
Q ss_pred EECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC
Q 018704 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 279 (351)
Q Consensus 235 VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l 279 (351)
|||+|.+|+-+|..|.+.+ .+|+++++.+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCccc
Confidence 7999999999999999866 899999997543
No 487
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.012 Score=52.69 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=62.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE---
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS--- 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 138 (351)
+-+.+|||||..+|.||-.|+..|++|++.=+.=. .+-+...+...........++.|...
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~----------------LrGFDqdmae~v~~~m~~~Gikf~~~~vp 261 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL----------------LRGFDQDMAELVAEHMEERGIKFLRKTVP 261 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEee----------------cccccHHHHHHHHHHHHHhCCceeecccc
Confidence 35789999999999999999999999988766321 11122233333333344456666543
Q ss_pred -EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 139 -~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.|+.++...-.+.......++ .....||.|+.|.|..+...
T Consensus 262 ~~Veq~~~g~l~v~~k~t~t~~------~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 262 ERVEQIDDGKLRVFYKNTNTGE------EGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred eeeeeccCCcEEEEeecccccc------cccchhhhhhhhhccccchh
Confidence 555555443222222212222 12677999999999876654
No 488
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.30 E-value=0.1 Score=48.70 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=50.9
Q ss_pred CCCCC--CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--eEEecCC-cEEeccEEEEecCCCCc----------cccc
Q 018704 277 EILSS--FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLILNDG-TEVPYGLLVWSTGVGPS----------TLVK 340 (351)
Q Consensus 277 ~~l~~--~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~v~~~~g-~~~~~D~vi~a~G~~p~----------~~~~ 340 (351)
++.|. -..++.+.+.+.+++.||+++++. |++++++ .+.+.++ ..++||.||+|+|-.+. .+++
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~ 156 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLD 156 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHH
Confidence 44443 347888999999999999999995 9999554 3444333 46999999999997542 3566
Q ss_pred cCCCCC
Q 018704 341 SLDLPK 346 (351)
Q Consensus 341 ~~gl~~ 346 (351)
++|..+
T Consensus 157 ~lGh~i 162 (376)
T TIGR03862 157 QRGVSV 162 (376)
T ss_pred HCCCcc
Confidence 666554
No 489
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.22 E-value=0.021 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.2
Q ss_pred EEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|+|+.+.+.|..++..|++|+++|+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999764
No 490
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.98 E-value=0.032 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|.|||+|..|...|..+++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999998765
No 491
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.94 E-value=0.034 Score=44.67 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=29.2
Q ss_pred EEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
|+|||+|..|...|..|++.|.+|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999855
No 492
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.91 E-value=0.039 Score=51.55 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=31.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999854
No 493
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.028 Score=51.17 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=31.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|..|.+.|..|++.|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998754
No 494
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.90 E-value=0.053 Score=52.01 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=30.3
Q ss_pred CCCCcEEEECC-chhHHHHHHhhhccCceEEEEcC
Q 018704 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 60 ~~~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
-+.++|+|.|| |..|...+..|.+.|++|+++|+
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 34578999996 99999999999999999999984
No 495
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.85 E-value=0.041 Score=50.17 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=31.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|.|||+|..|...|..++..|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 496
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.84 E-value=0.043 Score=43.35 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~ 95 (351)
...+++|||+|-+|-+++..|...|.+ ++|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 357999999999999999999999987 99998854
No 497
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.83 E-value=0.031 Score=54.09 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+|||+|++||.++..++..|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999998654
No 498
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.82 E-value=0.15 Score=47.24 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=28.3
Q ss_pred EEeeeEeCCCCE-EEEEe--ecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 138 SHCAGIDTDNHV-VHCET--VTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 138 ~~v~~i~~~~~~-v~~~~--~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.+|..+...+.. +.+.. ...++ .+++.+|.||+|||-....|
T Consensus 299 ~ev~~~~~~G~g~~~l~~~~~~~~~------~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 299 SEVQSVEPAGDGRYRLTLRHHETGE------LETVETDAVILATGYRRAVP 343 (436)
T ss_pred cceeeeecCCCceEEEEEeeccCCC------ceEEEeeEEEEecccccCCc
Confidence 477888777643 44432 22233 35899999999999886666
No 499
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.71 E-value=0.041 Score=49.68 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 36799999999999999999999999999998654
No 500
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.70 E-value=0.045 Score=49.95 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|||+|..|...|..|++.|++|+++.+++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999998854
Done!