BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018705
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
G +YFT ST Y + M G+L KYDP KETT+L + + G +S +
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247
FV+V E +YWL+G + G + ++ +P P NI DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
G +YFT ST Y + M G+L KYDP KETT+L + + G +S +
Sbjct: 129 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 188
Query: 203 FVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247
FV+V E +YWL+G + G + ++ +P P NI DG FW+
Sbjct: 189 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 235
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
G +YFT ST Y + G+L KYDP KETT+L + + G +S +
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247
FV+V E +YWL+G + G + ++ +P P NI DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 103 KDGGVILC-----DNEKGLLKVTEEG--VEAIVPDASFT---NDVIAASDGTLYFTVAST 152
KDG + +C + G+ TE G ++ I+ D S ND++ S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCINDMVFDSKGGFYFT---- 151
Query: 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES--- 209
DF P G + P + T + + ANGIALS +E + V E+
Sbjct: 152 -----DFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN 204
Query: 210 -WKRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGL 249
R L+ D I F +P GPD+ + D + ++ +
Sbjct: 205 RLHRIALEDDGVTI-QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 64 GALYTATRDGWVK-YFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE 122
G T +R W K +F+L L+ +++ + L G + I+ + K E
Sbjct: 69 GGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNK------EN 122
Query: 123 GVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTD 158
G++ I+ D +F + D + +F+V S ++ TD
Sbjct: 123 GIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTD 158
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 103 KDGGVILC-----DNEKGLLKVTEEG--VEAIVPDASFT---NDVIAASDGTLYFTVAST 152
KDG + +C + G+ TE G ++ I+ D S +D++ S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT---- 151
Query: 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES--- 209
DF P G + P + T + + ANGIALS +E + V E+
Sbjct: 152 -----DFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN 204
Query: 210 -WKRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGL 249
R L+ D I F +P GPD+ + D + ++ +
Sbjct: 205 RLHRIALEDDGVTI-QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 300 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 342
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 281 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 323
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 268 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 310
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 642 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 684
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 103 KDGGVILC-----DNEKGLLKVTEEG--VEAIVPDASFT---NDVIAASDGTLYFTVAST 152
KDG + +C + G+ TE G ++ I+ D S +D + S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDXVFDSKGGFYFT---- 151
Query: 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209
DF P G + P + T + + ANGIALS +E + V E+
Sbjct: 152 -----DFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 24/128 (18%)
Query: 134 TNDVIAASDGTLYFTVASTKYTPTDFYK--DMAEGKPYGQLRKYDPKLKETTVLHEGFYF 191
ND++A G +F + Y + K +M G + + Y P + V+ EGF F
Sbjct: 167 VNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDF 222
Query: 192 ANGIALSKNEDFVVVC----------ESWKRYWLKGDRAGILDAFIENLPGGPDNINLAP 241
ANGI +S + +V + E + L R D + DNI++ P
Sbjct: 223 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV-------DNISVDP 275
Query: 242 -DGSFWIG 248
G W+G
Sbjct: 276 VTGDLWVG 283
>pdb|1OJQ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus
pdb|1OJZ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus In With
Nad
Length = 212
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 270 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKII 302
L AYPG +LLP G++ VK+ N KII
Sbjct: 172 LTAYPGQQEVLLPRGTEYAVGSVKLSDNKRKII 204
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 190 YFANGIALSKNEDFVVVCESWKRYWLKGDRAG----ILDAFIENLPGGPDNINLAPDGSF 245
+ NG L+K + +R + + G I D+F P+++ LAPDGS
Sbjct: 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL 128
Query: 246 WI 247
W
Sbjct: 129 WF 130
>pdb|4EKJ|A Chain A, Crystal Structure Of A Monomeric Beta-xylosidase From
Caulobacter Crescentus Cb15
Length = 500
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTK----DGGVILCDNEKGLLKVT-EEGVEAI 127
WV F+ H + S S + TT DGG + +EKG+ +A+
Sbjct: 207 AWVPEFLAHVKK--------SGSAVDFVTTHTYGVDGGFL---DEKGVQDTKLSPSPDAV 255
Query: 128 VPDASFTNDVIAASDGT---LYFTVASTKYTPTDFYKD 162
V D + I AS LYFT ST YTP D D
Sbjct: 256 VGDVRRVREQIEASAFPGLPLYFTEWSTSYTPRDSVHD 293
>pdb|3ABO|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABO|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABQ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABQ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABR|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABR|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABS|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ABS|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ANY|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3ANY|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3AO0|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
pdb|3AO0|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
Length = 453
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 90 HIDSQSLLGLTTTKDGGVI---LCDNEKGLLKVTEEGVEAIVPD------ASFTNDVIAA 140
H+ +Q + + GG+I +C +EKGL E GVE + D A F A
Sbjct: 227 HVTTQ-IEAIRRGAPGGLIFQSICGSEKGL---KEFGVELAMLDEARAVGAEFNR---IA 279
Query: 141 SDGTLYFTVA--STKYTPTDFYKDMA--EGKPYGQLRKYDPKLKETTV 184
+ LYF S +F D E + YG R YDP + T V
Sbjct: 280 GENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFIVNTVV 327
>pdb|1U2O|A Chain A, Crystal Structure Of The N-Domain Of Grp94 Lacking The
Charged Domain In Complex With Neca
pdb|1U2O|B Chain B, Crystal Structure Of The N-Domain Of Grp94 Lacking The
Charged Domain In Complex With Neca
pdb|1TBW|A Chain A, Ligand Induced Conformational Shift In The N-Terminal
Domain Of Grp94, Open Conformation
pdb|1TBW|B Chain B, Ligand Induced Conformational Shift In The N-Terminal
Domain Of Grp94, Open Conformation
pdb|1TC0|A Chain A, Ligand Induced Conformational Shifts In The N-Terminal
Domain Of Grp94, Open Conformation Complexed With The
Physiological Partner Atp
pdb|1TC0|B Chain B, Ligand Induced Conformational Shifts In The N-Terminal
Domain Of Grp94, Open Conformation Complexed With The
Physiological Partner Atp
pdb|1TC6|A Chain A, Ligand Induced Conformational Shift In The N-Terminal
Domain Of Grp94, Open Conformation Adp-Complex
pdb|1TC6|B Chain B, Ligand Induced Conformational Shift In The N-Terminal
Domain Of Grp94, Open Conformation Adp-Complex
pdb|1U0Z|A Chain A, N-Domain Of Grp94 Lacking The Charged Domain In Complex
With Radicicol
pdb|1U0Z|B Chain B, N-Domain Of Grp94 Lacking The Charged Domain In Complex
With Radicicol
pdb|1YSZ|A Chain A, Crystal Structure Of The Unliganded Form Of Grp94, The Er
Hsp90: Basis For Nucleotide-Induced Conformational
Change, Grp94n(Delta)41 Apo Crystal Soaked With Neca
pdb|1YT0|A Chain A, Crystal Structure Of The Unliganded Form Of Grp94, The Er
Hsp90: Basis For Nucleotide-Induced Conformational
Change, Grp94n(Delta)41 Apo Crystal Soaked With Adp
pdb|1YT1|A Chain A, Crystal Structure Of The Unliganded Form Of Grp94, The Er
Hsp90: Basis For Nucleotide-Induced Conformational
Change, Grp94n(Delta)41 Apo Crystal
pdb|1YT1|B Chain B, Crystal Structure Of The Unliganded Form Of Grp94, The Er
Hsp90: Basis For Nucleotide-Induced Conformational
Change, Grp94n(Delta)41 Apo Crystal
pdb|2EXL|A Chain A, Grp94 N-Terminal Domain Bound To Geldanamycin
pdb|2EXL|B Chain B, Grp94 N-Terminal Domain Bound To Geldanamycin
pdb|2FYP|A Chain A, Grp94 In Complex With The Novel Hsp90 Inhibitor Radester
Amine
pdb|2FYP|B Chain B, Grp94 In Complex With The Novel Hsp90 Inhibitor Radester
Amine
pdb|2GFD|A Chain A, Grp94 In Complex With The Novel Hsp90 Inhibitor Radamide
pdb|2GFD|B Chain B, Grp94 In Complex With The Novel Hsp90 Inhibitor Radamide
pdb|2GQP|A Chain A, N-Domain Of Grp94 In Complex With The Novel Ligand
N-Propyl Carboxyamido Adenosine
pdb|2GQP|B Chain B, N-Domain Of Grp94 In Complex With The Novel Ligand
N-Propyl Carboxyamido Adenosine
pdb|2HCH|A Chain A, N-Domain Of Grp94 In Complex With The Novel Ligand N-(2-
Amino)ethyl Carboxyamido Adenosine
pdb|2HCH|B Chain B, N-Domain Of Grp94 In Complex With The Novel Ligand N-(2-
Amino)ethyl Carboxyamido Adenosine
pdb|2H8M|A Chain A, N-Domain Of Grp94 In Complex With The 2-Iodo-Neca
pdb|2H8M|B Chain B, N-Domain Of Grp94 In Complex With The 2-Iodo-Neca
pdb|2HG1|A Chain A, N-Domain Of Grp94 In Complex With The Novel Ligand N-(2-
Hydroxyl)ethyl Carboxyamido Adenosine
pdb|2HG1|B Chain B, N-Domain Of Grp94 In Complex With The Novel Ligand N-(2-
Hydroxyl)ethyl Carboxyamido Adenosine
pdb|3O2F|A Chain A, Structure Of The N-Domain Of Grp94 Bound To The Hsp90
Inhibitor Pu-H54
pdb|3O2F|B Chain B, Structure Of The N-Domain Of Grp94 Bound To The Hsp90
Inhibitor Pu-H54
Length = 236
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 108 ILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK 167
I CD EK LL VT+ GV T + + + GT+ K ++F M E +
Sbjct: 72 IKCDKEKNLLHVTDTGV-------GMTREELVKNLGTI------AKSGTSEFLNKMTEAQ 118
Query: 168 PYGQ 171
GQ
Sbjct: 119 EDGQ 122
>pdb|3VHL|A Chain A, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 288
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 165 EGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206
EG+P G+L + + T +H Y I +S+ E+FV+
Sbjct: 124 EGRPRGELHEQHRRNTVLTTMHAFPYIKTRIRVSQKEEFVLT 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,117,670
Number of Sequences: 62578
Number of extensions: 496400
Number of successful extensions: 1200
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 35
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)