Query 018705
Match_columns 351
No_of_seqs 209 out of 2148
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 5.4E-46 1.2E-50 334.1 29.7 304 36-342 49-376 (376)
2 COG3386 Gluconolactonase [Carb 100.0 1.6E-25 3.6E-30 203.3 29.5 236 51-335 24-279 (307)
3 PF08450 SGL: SMP-30/Gluconola 99.9 1.8E-25 3.8E-30 199.7 25.8 223 54-331 2-245 (246)
4 COG4257 Vgb Streptogramin lyas 99.8 3.8E-19 8.2E-24 152.9 22.6 242 43-343 53-306 (353)
5 PF03088 Str_synth: Strictosid 99.8 8.3E-19 1.8E-23 128.7 7.8 84 135-218 1-89 (89)
6 PLN02919 haloacid dehalogenase 99.8 1.8E-15 4E-20 158.9 33.9 240 50-345 566-891 (1057)
7 COG4257 Vgb Streptogramin lyas 99.7 1.5E-14 3.3E-19 124.8 24.1 247 37-342 89-347 (353)
8 KOG4499 Ca2+-binding protein R 99.7 2.8E-14 6E-19 120.5 21.6 227 55-331 18-274 (310)
9 PF08450 SGL: SMP-30/Gluconola 99.6 9.4E-14 2E-18 123.9 18.8 176 53-250 41-245 (246)
10 TIGR02604 Piru_Ver_Nterm putat 99.6 4.1E-12 8.9E-17 120.0 27.5 164 43-211 4-204 (367)
11 PLN02919 haloacid dehalogenase 99.6 1.9E-12 4.2E-17 136.3 27.4 182 51-251 623-878 (1057)
12 PF10282 Lactonase: Lactonase, 99.4 5.8E-10 1.3E-14 104.5 26.8 246 38-342 25-322 (345)
13 PRK11028 6-phosphogluconolacto 99.4 1.5E-09 3.1E-14 101.2 28.5 247 38-343 23-305 (330)
14 COG2706 3-carboxymuconate cycl 99.2 6.2E-08 1.4E-12 87.2 28.0 251 37-344 27-323 (346)
15 COG3386 Gluconolactonase [Carb 99.2 5.6E-09 1.2E-13 95.4 21.0 174 54-251 69-276 (307)
16 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 1.9E-07 4.1E-12 84.7 31.0 236 52-346 31-283 (300)
17 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 2.5E-07 5.4E-12 83.9 31.3 163 65-248 2-174 (300)
18 COG3292 Predicted periplasmic 99.1 1.9E-09 4.2E-14 101.9 16.3 228 54-344 167-406 (671)
19 PF10282 Lactonase: Lactonase, 99.1 2.6E-07 5.7E-12 86.6 30.1 226 65-343 1-276 (345)
20 PF03022 MRJP: Major royal jel 99.1 2.4E-08 5.2E-13 90.8 21.7 178 95-330 3-253 (287)
21 PRK11028 6-phosphogluconolacto 99.1 1E-07 2.2E-12 88.8 25.3 180 52-250 80-293 (330)
22 TIGR02604 Piru_Ver_Nterm putat 98.9 5.3E-08 1.2E-12 92.0 17.9 137 92-251 13-203 (367)
23 COG3391 Uncharacterized conser 98.9 2.2E-06 4.8E-11 81.4 28.3 239 52-343 31-284 (381)
24 COG3292 Predicted periplasmic 98.9 2.9E-08 6.3E-13 94.1 15.0 188 57-251 211-438 (671)
25 COG2706 3-carboxymuconate cycl 98.9 1.8E-06 4E-11 77.8 24.4 196 38-251 76-310 (346)
26 PF07995 GSDH: Glucose / Sorbo 98.9 9E-07 2E-11 82.4 22.6 153 52-211 2-202 (331)
27 KOG4659 Uncharacterized conser 98.8 1.5E-06 3.3E-11 89.0 24.7 175 53-251 408-681 (1899)
28 cd00200 WD40 WD40 domain, foun 98.8 1.4E-05 3.1E-10 70.5 28.1 176 53-249 11-196 (289)
29 cd00200 WD40 WD40 domain, foun 98.8 1.2E-05 2.5E-10 71.1 27.1 224 55-338 55-287 (289)
30 COG3391 Uncharacterized conser 98.8 1.7E-06 3.7E-11 82.2 22.1 178 52-249 74-271 (381)
31 KOG1520 Predicted alkaloid syn 98.8 7.4E-08 1.6E-12 88.1 12.0 142 51-211 114-285 (376)
32 PRK04792 tolB translocation pr 98.8 6.2E-06 1.4E-10 80.1 26.2 176 55-248 221-410 (448)
33 KOG0291 WD40-repeat-containing 98.8 8.8E-06 1.9E-10 79.6 26.3 188 51-257 350-547 (893)
34 KOG1214 Nidogen and related ba 98.8 3E-07 6.4E-12 90.3 16.3 180 52-250 1025-1215(1289)
35 TIGR02658 TTQ_MADH_Hv methylam 98.8 3.9E-05 8.4E-10 71.4 29.5 244 63-344 12-332 (352)
36 PRK04922 tolB translocation pr 98.7 1.7E-05 3.8E-10 76.7 25.4 174 55-246 207-393 (433)
37 KOG1446 Histone H3 (Lys4) meth 98.7 7.4E-05 1.6E-09 66.3 26.6 236 52-346 15-266 (311)
38 KOG4659 Uncharacterized conser 98.7 7.6E-06 1.7E-10 84.1 22.9 153 50-214 473-686 (1899)
39 TIGR03606 non_repeat_PQQ dehyd 98.6 4.2E-06 9.1E-11 80.1 19.8 165 43-211 22-250 (454)
40 PRK05137 tolB translocation pr 98.6 3.6E-05 7.8E-10 74.5 25.8 174 54-245 204-390 (435)
41 PRK02889 tolB translocation pr 98.6 5.2E-05 1.1E-09 73.3 26.7 174 56-247 200-386 (427)
42 PRK03629 tolB translocation pr 98.6 6.7E-05 1.5E-09 72.5 27.3 177 55-249 202-391 (429)
43 PF02239 Cytochrom_D1: Cytochr 98.6 5.4E-05 1.2E-09 71.5 25.8 169 63-250 5-190 (369)
44 PRK00178 tolB translocation pr 98.6 5.4E-05 1.2E-09 73.2 26.6 175 55-247 202-389 (430)
45 KOG1214 Nidogen and related ba 98.6 5.7E-06 1.2E-10 81.6 19.2 144 92-252 1024-1178(1289)
46 PRK05137 tolB translocation pr 98.5 0.00015 3.3E-09 70.2 28.0 156 74-246 183-348 (435)
47 PRK03629 tolB translocation pr 98.5 0.00028 6.1E-09 68.2 28.7 158 74-248 180-347 (429)
48 PRK11138 outer membrane biogen 98.5 6.2E-05 1.4E-09 71.9 23.9 129 168-342 264-394 (394)
49 KOG0279 G protein beta subunit 98.5 0.00023 4.9E-09 62.4 24.4 221 63-344 28-264 (315)
50 PRK04792 tolB translocation pr 98.5 0.0003 6.5E-09 68.4 28.3 156 74-246 199-364 (448)
51 TIGR03300 assembly_YfgL outer 98.5 0.00049 1.1E-08 65.3 29.2 108 55-183 59-168 (377)
52 TIGR03032 conserved hypothetic 98.4 0.00013 2.9E-09 65.5 22.6 233 37-308 38-301 (335)
53 PF01731 Arylesterase: Arylest 98.4 1E-06 2.2E-11 64.4 7.6 73 135-211 1-75 (86)
54 TIGR02800 propeller_TolB tol-p 98.4 0.00027 5.8E-09 67.9 26.8 175 56-248 194-382 (417)
55 KOG0315 G-protein beta subunit 98.4 6.3E-05 1.4E-09 64.9 19.2 177 55-251 87-278 (311)
56 TIGR03300 assembly_YfgL outer 98.4 0.00018 3.8E-09 68.3 23.9 127 167-339 248-376 (377)
57 PF02239 Cytochrom_D1: Cytochr 98.4 0.00029 6.2E-09 66.6 24.6 158 42-217 28-200 (369)
58 PRK02889 tolB translocation pr 98.4 0.00066 1.4E-08 65.6 27.4 155 74-245 177-341 (427)
59 PRK01742 tolB translocation pr 98.3 0.00032 6.8E-09 67.9 24.7 175 54-250 206-390 (429)
60 PRK00178 tolB translocation pr 98.3 0.001 2.2E-08 64.3 27.8 166 63-245 163-344 (430)
61 PRK04922 tolB translocation pr 98.3 0.00078 1.7E-08 65.2 27.0 155 74-245 185-349 (433)
62 PRK04043 tolB translocation pr 98.3 0.00078 1.7E-08 64.8 26.3 173 56-248 192-385 (419)
63 KOG0266 WD40 repeat-containing 98.3 0.00057 1.2E-08 66.6 25.7 175 55-249 163-352 (456)
64 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00067 1.5E-08 63.2 24.6 194 52-305 105-338 (352)
65 KOG0279 G protein beta subunit 98.3 0.00083 1.8E-08 59.0 23.3 192 37-251 49-252 (315)
66 KOG1446 Histone H3 (Lys4) meth 98.3 0.00025 5.4E-09 63.1 20.5 147 45-211 94-254 (311)
67 PRK11138 outer membrane biogen 98.3 0.00026 5.6E-09 67.6 22.8 215 63-343 120-354 (394)
68 KOG0266 WD40 repeat-containing 98.3 7.7E-05 1.7E-09 72.7 18.2 150 48-215 200-362 (456)
69 TIGR03606 non_repeat_PQQ dehyd 98.2 0.00017 3.6E-09 69.3 19.7 112 124-252 22-166 (454)
70 KOG0318 WD40 repeat stress pro 98.2 0.0025 5.4E-08 60.5 26.0 185 44-251 313-507 (603)
71 PF03022 MRJP: Major royal jel 98.2 0.00022 4.7E-09 65.0 18.9 177 55-251 4-255 (287)
72 PF06977 SdiA-regulated: SdiA- 98.2 0.00038 8.2E-09 61.8 19.6 181 51-250 21-240 (248)
73 TIGR02800 propeller_TolB tol-p 98.2 0.003 6.4E-08 60.6 27.5 160 73-249 170-339 (417)
74 PF06977 SdiA-regulated: SdiA- 98.2 0.0017 3.7E-08 57.6 23.4 193 92-340 21-248 (248)
75 COG2133 Glucose/sorbosone dehy 98.2 0.0021 4.6E-08 60.5 24.9 162 43-211 59-260 (399)
76 PTZ00421 coronin; Provisional 98.2 0.0053 1.2E-07 60.3 28.7 136 54-207 78-229 (493)
77 PF13360 PQQ_2: PQQ-like domai 98.1 0.0025 5.3E-08 56.0 24.1 166 58-249 32-219 (238)
78 KOG0272 U4/U6 small nuclear ri 98.1 0.00028 6E-09 65.1 17.5 182 48-250 214-407 (459)
79 KOG2055 WD40 repeat protein [G 98.1 0.00095 2.1E-08 62.3 21.1 180 53-251 215-406 (514)
80 PRK01029 tolB translocation pr 98.1 0.0032 7E-08 60.8 25.4 177 55-248 188-388 (428)
81 PRK04043 tolB translocation pr 98.1 0.0067 1.4E-07 58.4 26.9 166 64-249 156-336 (419)
82 PF05096 Glu_cyclase_2: Glutam 98.1 0.00073 1.6E-08 59.8 18.4 135 51-208 89-249 (264)
83 COG3204 Uncharacterized protei 98.0 0.003 6.6E-08 56.2 21.5 181 51-250 85-302 (316)
84 KOG0263 Transcription initiati 98.0 0.0012 2.5E-08 65.3 20.6 193 92-343 451-650 (707)
85 KOG0286 G-protein beta subunit 98.0 0.0025 5.4E-08 56.4 20.5 176 48-244 142-328 (343)
86 PF13360 PQQ_2: PQQ-like domai 98.0 0.0085 1.8E-07 52.5 24.3 210 72-344 2-232 (238)
87 PRK01742 tolB translocation pr 98.0 0.0059 1.3E-07 59.1 24.8 154 73-246 184-347 (429)
88 KOG1273 WD40 repeat protein [G 98.0 0.0035 7.5E-08 56.1 20.5 196 53-250 25-268 (405)
89 KOG0291 WD40-repeat-containing 97.9 0.011 2.3E-07 58.7 24.9 219 64-340 278-506 (893)
90 PF05787 DUF839: Bacterial pro 97.9 0.0003 6.6E-09 69.2 14.5 75 132-207 436-519 (524)
91 KOG4499 Ca2+-binding protein R 97.9 0.00041 8.9E-09 59.6 13.2 132 58-209 115-274 (310)
92 KOG0286 G-protein beta subunit 97.9 0.016 3.5E-07 51.5 25.3 202 45-251 49-293 (343)
93 KOG0275 Conserved WD40 repeat- 97.9 0.00079 1.7E-08 60.2 15.3 149 48-215 210-376 (508)
94 PF05096 Glu_cyclase_2: Glutam 97.9 0.0041 8.9E-08 55.1 19.8 155 132-343 45-204 (264)
95 KOG0275 Conserved WD40 repeat- 97.8 0.00044 9.5E-09 61.8 12.6 227 54-339 266-505 (508)
96 KOG0318 WD40 repeat stress pro 97.8 0.032 7E-07 53.3 25.3 192 54-249 193-423 (603)
97 KOG0278 Serine/threonine kinas 97.8 0.0029 6.2E-08 54.9 16.7 141 57-217 149-297 (334)
98 PTZ00421 coronin; Provisional 97.8 0.049 1.1E-06 53.5 28.6 101 93-211 76-190 (493)
99 PF07995 GSDH: Glucose / Sorbo 97.8 0.00046 9.9E-09 64.3 12.6 148 93-252 2-202 (331)
100 KOG0296 Angio-associated migra 97.7 0.034 7.3E-07 50.8 24.3 148 56-223 69-224 (399)
101 PLN00181 protein SPA1-RELATED; 97.7 0.074 1.6E-06 55.7 29.7 140 54-211 486-640 (793)
102 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.028 6.1E-07 49.3 21.4 66 58-123 100-167 (354)
103 PLN00181 protein SPA1-RELATED; 97.7 0.1 2.2E-06 54.7 31.0 176 54-250 535-727 (793)
104 PF03088 Str_synth: Strictosid 97.7 0.00016 3.6E-09 53.2 6.5 54 98-151 2-77 (89)
105 PF05787 DUF839: Bacterial pro 97.7 0.0063 1.4E-07 60.0 19.3 168 40-211 233-456 (524)
106 KOG0271 Notchless-like WD40 re 97.6 0.002 4.4E-08 58.9 14.0 184 43-251 239-471 (480)
107 PF07433 DUF1513: Protein of u 97.6 0.051 1.1E-06 49.3 27.5 228 74-345 29-288 (305)
108 KOG0294 WD40 repeat-containing 97.6 0.05 1.1E-06 48.9 21.6 169 55-249 47-226 (362)
109 KOG1539 WD repeat protein [Gen 97.5 0.0066 1.4E-07 60.7 17.3 147 52-216 449-647 (910)
110 COG4946 Uncharacterized protei 97.5 0.006 1.3E-07 57.5 15.8 133 65-211 373-510 (668)
111 KOG0289 mRNA splicing factor [ 97.5 0.055 1.2E-06 50.6 21.8 187 95-339 305-502 (506)
112 PRK13684 Ycf48-like protein; P 97.5 0.085 1.8E-06 49.2 24.2 185 94-340 133-329 (334)
113 KOG2106 Uncharacterized conser 97.5 0.071 1.5E-06 50.8 22.5 169 55-251 250-427 (626)
114 KOG0271 Notchless-like WD40 re 97.5 0.0032 6.8E-08 57.7 13.4 184 64-251 218-429 (480)
115 TIGR03118 PEPCTERM_chp_1 conse 97.5 0.035 7.6E-07 50.0 19.6 217 93-342 23-279 (336)
116 PF14583 Pectate_lyase22: Olig 97.4 0.031 6.7E-07 52.3 19.7 152 65-217 50-222 (386)
117 KOG0315 G-protein beta subunit 97.4 0.022 4.7E-07 49.6 17.0 165 68-251 15-187 (311)
118 KOG0282 mRNA splicing factor [ 97.4 0.0083 1.8E-07 56.5 15.6 180 52-250 259-451 (503)
119 PRK02888 nitrous-oxide reducta 97.4 0.01 2.2E-07 58.7 16.6 83 170-252 296-395 (635)
120 PTZ00420 coronin; Provisional 97.4 0.19 4E-06 50.2 27.1 101 93-211 75-189 (568)
121 PRK01029 tolB translocation pr 97.4 0.16 3.4E-06 49.2 28.3 157 73-246 165-341 (428)
122 KOG0263 Transcription initiati 97.4 0.0097 2.1E-07 59.0 16.2 178 56-254 456-642 (707)
123 KOG0284 Polyadenylation factor 97.4 0.0043 9.3E-08 57.2 12.9 176 55-251 100-284 (464)
124 PF07433 DUF1513: Protein of u 97.3 0.028 6.1E-07 51.0 17.5 176 58-250 57-275 (305)
125 COG3823 Glutamine cyclotransfe 97.3 0.023 5E-07 48.2 15.7 40 169-208 195-247 (262)
126 KOG0285 Pleiotropic regulator 97.3 0.038 8.1E-07 50.5 18.0 104 47-151 147-255 (460)
127 KOG0643 Translation initiation 97.3 0.1 2.3E-06 45.9 19.9 149 43-210 42-210 (327)
128 PF14870 PSII_BNR: Photosynthe 97.3 0.14 3E-06 46.9 22.7 176 52-250 17-205 (302)
129 PRK13684 Ycf48-like protein; P 97.3 0.15 3.3E-06 47.5 29.1 176 53-250 47-233 (334)
130 COG4946 Uncharacterized protei 97.3 0.11 2.3E-06 49.4 21.2 84 166-250 377-461 (668)
131 COG3211 PhoX Predicted phospha 97.3 0.0026 5.7E-08 61.4 10.9 70 132-207 500-571 (616)
132 PTZ00420 coronin; Provisional 97.3 0.13 2.9E-06 51.3 23.3 113 52-183 75-202 (568)
133 KOG1274 WD40 repeat protein [G 97.3 0.11 2.3E-06 53.0 22.2 143 53-214 15-165 (933)
134 KOG2106 Uncharacterized conser 97.2 0.066 1.4E-06 51.0 19.3 138 51-211 329-469 (626)
135 PRK02888 nitrous-oxide reducta 97.2 0.012 2.5E-07 58.4 14.8 104 43-149 228-392 (635)
136 KOG0272 U4/U6 small nuclear ri 97.2 0.0096 2.1E-07 55.2 13.1 148 49-214 301-457 (459)
137 cd00216 PQQ_DH Dehydrogenases 97.2 0.29 6.3E-06 48.2 26.0 255 63-344 110-426 (488)
138 KOG0293 WD40 repeat-containing 97.2 0.0079 1.7E-07 55.7 12.2 156 51-207 312-500 (519)
139 KOG0316 Conserved WD40 repeat- 97.1 0.086 1.9E-06 45.6 17.4 96 55-151 21-121 (307)
140 KOG2055 WD40 repeat protein [G 97.1 0.0067 1.4E-07 56.9 11.7 180 53-252 305-504 (514)
141 KOG0646 WD40 repeat protein [G 97.1 0.046 9.9E-07 51.4 16.8 143 55-216 85-244 (476)
142 KOG0289 mRNA splicing factor [ 97.1 0.14 3E-06 48.0 19.7 177 56-251 308-496 (506)
143 COG2133 Glucose/sorbosone dehy 97.0 0.085 1.8E-06 49.9 17.9 151 98-251 181-386 (399)
144 KOG0282 mRNA splicing factor [ 97.0 0.004 8.6E-08 58.5 8.8 148 45-212 295-455 (503)
145 KOG0273 Beta-transducin family 96.9 0.38 8.2E-06 45.6 23.1 94 56-151 281-379 (524)
146 KOG0278 Serine/threonine kinas 96.9 0.02 4.3E-07 49.8 12.0 175 54-251 103-287 (334)
147 PF08662 eIF2A: Eukaryotic tra 96.9 0.16 3.4E-06 43.5 17.2 119 73-209 39-163 (194)
148 KOG0772 Uncharacterized conser 96.9 0.38 8.2E-06 46.2 20.6 71 53-123 169-245 (641)
149 TIGR03032 conserved hypothetic 96.8 0.028 6.2E-07 50.9 12.2 133 54-209 105-260 (335)
150 PF01436 NHL: NHL repeat; Int 96.7 0.0034 7.3E-08 35.5 3.8 20 132-151 2-21 (28)
151 PF01436 NHL: NHL repeat; Int 96.7 0.0027 5.8E-08 35.9 3.3 26 189-215 1-27 (28)
152 PF13449 Phytase-like: Esteras 96.7 0.17 3.6E-06 47.1 17.1 126 51-179 19-193 (326)
153 KOG1407 WD40 repeat protein [F 96.7 0.21 4.5E-06 44.0 16.1 144 56-217 111-259 (313)
154 COG3204 Uncharacterized protei 96.6 0.51 1.1E-05 42.4 20.9 190 93-342 86-312 (316)
155 KOG0645 WD40 repeat protein [G 96.6 0.49 1.1E-05 41.9 18.0 153 46-215 56-223 (312)
156 KOG2048 WD40 repeat protein [G 96.5 0.96 2.1E-05 44.8 23.0 144 55-217 29-182 (691)
157 KOG1274 WD40 repeat protein [G 96.5 0.24 5.2E-06 50.5 17.9 174 56-250 61-251 (933)
158 cd00216 PQQ_DH Dehydrogenases 96.5 0.41 8.8E-06 47.2 19.6 190 56-252 221-458 (488)
159 KOG0316 Conserved WD40 repeat- 96.5 0.49 1.1E-05 41.1 18.2 128 68-217 76-211 (307)
160 KOG2048 WD40 repeat protein [G 96.5 1 2.2E-05 44.6 24.0 145 49-214 67-230 (691)
161 KOG0296 Angio-associated migra 96.5 0.71 1.5E-05 42.5 21.5 71 52-123 149-222 (399)
162 KOG0640 mRNA cleavage stimulat 96.4 0.035 7.5E-07 49.8 10.2 135 95-251 114-281 (430)
163 PF08662 eIF2A: Eukaryotic tra 96.4 0.35 7.7E-06 41.3 16.3 115 115-251 40-163 (194)
164 KOG0268 Sof1-like rRNA process 96.4 0.025 5.4E-07 51.6 9.3 144 55-216 191-344 (433)
165 KOG0303 Actin-binding protein 96.4 0.086 1.9E-06 48.8 12.8 174 23-211 101-285 (472)
166 KOG0285 Pleiotropic regulator 96.4 0.8 1.7E-05 42.1 19.7 141 49-209 191-338 (460)
167 KOG0283 WD40 repeat-containing 96.3 0.056 1.2E-06 54.2 12.2 143 54-215 412-574 (712)
168 KOG0293 WD40 repeat-containing 96.3 0.62 1.3E-05 43.6 18.0 135 98-251 274-415 (519)
169 COG3211 PhoX Predicted phospha 96.3 0.4 8.6E-06 46.8 17.2 119 132-252 417-575 (616)
170 PF02333 Phytase: Phytase; In 96.3 0.58 1.2E-05 44.1 18.0 79 171-251 130-228 (381)
171 PF14870 PSII_BNR: Photosynthe 96.3 0.9 2E-05 41.6 24.4 173 56-251 66-252 (302)
172 PF06433 Me-amine-dh_H: Methyl 96.2 0.86 1.9E-05 42.1 18.5 116 144-308 4-137 (342)
173 KOG1407 WD40 repeat protein [F 96.2 0.77 1.7E-05 40.5 20.6 176 49-249 18-207 (313)
174 KOG1538 Uncharacterized conser 96.2 1.5 3.3E-05 43.6 21.4 66 53-120 14-80 (1081)
175 KOG0639 Transducin-like enhanc 96.2 0.19 4E-06 48.1 14.1 154 39-214 409-578 (705)
176 PLN00033 photosystem II stabil 96.2 1.2 2.7E-05 42.4 24.8 108 191-339 282-396 (398)
177 COG0823 TolB Periplasmic compo 96.1 1.4 3E-05 42.6 20.6 127 66-208 208-344 (425)
178 COG1520 FOG: WD40-like repeat 96.1 1.3 2.9E-05 41.8 22.1 104 59-183 65-176 (370)
179 PF06433 Me-amine-dh_H: Methyl 96.0 0.6 1.3E-05 43.1 16.4 163 136-346 40-217 (342)
180 KOG1009 Chromatin assembly com 96.0 0.46 9.9E-06 44.2 15.5 92 93-202 66-178 (434)
181 KOG0650 WD40 repeat nucleolar 96.0 1.5 3.2E-05 43.1 19.5 81 23-105 369-453 (733)
182 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 2 4.4E-05 42.7 23.6 108 63-184 69-195 (527)
183 KOG0299 U3 snoRNP-associated p 95.9 0.35 7.7E-06 45.6 14.3 177 55-251 248-446 (479)
184 KOG0306 WD40-repeat-containing 95.8 0.25 5.5E-06 49.4 13.8 143 55-215 512-662 (888)
185 KOG0292 Vesicle coat complex C 95.8 2.7 5.9E-05 43.3 21.0 143 53-214 11-162 (1202)
186 KOG0301 Phospholipase A2-activ 95.8 2 4.4E-05 42.8 19.7 133 62-216 70-207 (745)
187 KOG0299 U3 snoRNP-associated p 95.8 1.7 3.6E-05 41.3 18.3 237 56-346 207-460 (479)
188 PF02333 Phytase: Phytase; In 95.7 1 2.2E-05 42.5 16.8 131 65-214 70-232 (381)
189 KOG0319 WD40-repeat-containing 95.6 0.58 1.3E-05 46.8 15.1 143 54-211 65-214 (775)
190 KOG0288 WD40 repeat protein Ti 95.6 0.54 1.2E-05 43.9 14.1 122 69-209 318-451 (459)
191 KOG0268 Sof1-like rRNA process 95.5 0.4 8.7E-06 44.1 12.8 178 49-251 64-249 (433)
192 KOG0295 WD40 repeat-containing 95.4 0.79 1.7E-05 42.2 14.4 160 49-214 191-361 (406)
193 KOG0273 Beta-transducin family 95.4 2.5 5.5E-05 40.3 21.3 142 53-215 237-387 (524)
194 KOG0646 WD40 repeat protein [G 95.4 1.7 3.7E-05 41.2 17.0 204 93-341 82-306 (476)
195 KOG0283 WD40 repeat-containing 95.4 1.1 2.4E-05 45.3 16.7 95 98-211 374-473 (712)
196 KOG0973 Histone transcription 95.3 0.4 8.7E-06 49.6 13.6 95 54-149 132-237 (942)
197 KOG0771 Prolactin regulatory e 95.3 0.53 1.2E-05 43.9 13.1 177 55-248 148-341 (398)
198 KOG2139 WD40 repeat protein [G 95.2 0.56 1.2E-05 43.2 12.9 95 132-244 196-293 (445)
199 KOG2096 WD40 repeat protein [G 95.1 1.9 4.2E-05 39.2 15.8 62 190-251 332-393 (420)
200 KOG0319 WD40-repeat-containing 95.1 2.6 5.6E-05 42.4 18.0 97 53-150 106-211 (775)
201 KOG1273 WD40 repeat protein [G 95.0 2.6 5.7E-05 38.3 17.1 54 98-151 28-85 (405)
202 KOG0640 mRNA cleavage stimulat 95.0 0.17 3.7E-06 45.5 8.8 133 55-206 176-322 (430)
203 KOG0772 Uncharacterized conser 94.9 0.51 1.1E-05 45.3 12.1 120 49-180 315-447 (641)
204 KOG0973 Histone transcription 94.9 0.71 1.5E-05 47.9 13.9 100 51-151 69-191 (942)
205 KOG0303 Actin-binding protein 94.8 3.5 7.6E-05 38.6 18.8 82 169-251 153-236 (472)
206 PF14517 Tachylectin: Tachylec 94.7 0.051 1.1E-06 47.2 4.8 124 36-179 65-207 (229)
207 KOG0643 Translation initiation 94.7 2.9 6.4E-05 37.1 18.8 97 93-206 10-110 (327)
208 KOG0292 Vesicle coat complex C 94.7 6.3 0.00014 40.8 21.3 129 49-207 248-383 (1202)
209 COG4247 Phy 3-phytase (myo-ino 94.7 2.9 6.4E-05 36.9 17.2 150 171-331 127-297 (364)
210 PRK13616 lipoprotein LpqB; Pro 94.6 5.7 0.00012 40.1 24.6 222 65-340 322-565 (591)
211 COG3490 Uncharacterized protei 94.6 2.3 5.1E-05 38.2 14.7 58 92-150 161-244 (366)
212 KOG0310 Conserved WD40 repeat- 94.6 4.5 9.6E-05 38.7 18.7 187 53-260 28-225 (487)
213 KOG2096 WD40 repeat protein [G 94.5 3.6 7.8E-05 37.5 21.3 140 53-211 88-250 (420)
214 TIGR02276 beta_rpt_yvtn 40-res 94.5 0.19 4.1E-06 30.8 6.0 41 141-198 1-42 (42)
215 KOG2110 Uncharacterized conser 94.5 1.1 2.4E-05 41.3 12.8 93 58-151 134-238 (391)
216 PF08553 VID27: VID27 cytoplas 94.4 0.88 1.9E-05 47.0 13.3 139 52-208 481-637 (794)
217 TIGR03118 PEPCTERM_chp_1 conse 94.2 4.2 9.1E-05 37.0 18.9 148 69-222 106-282 (336)
218 PF14583 Pectate_lyase22: Olig 94.2 1.5 3.2E-05 41.4 13.5 123 169-306 59-185 (386)
219 PF00058 Ldl_recept_b: Low-den 94.1 0.28 6.1E-06 30.5 5.9 40 143-199 1-42 (42)
220 KOG0310 Conserved WD40 repeat- 93.7 3.3 7.1E-05 39.6 14.6 139 52-211 154-301 (487)
221 TIGR02276 beta_rpt_yvtn 40-res 93.6 0.42 9.1E-06 29.2 6.2 41 61-102 1-42 (42)
222 KOG0288 WD40 repeat protein Ti 93.5 6.7 0.00015 36.9 16.5 66 54-120 178-246 (459)
223 KOG0308 Conserved WD40 repeat- 93.5 4.4 9.5E-05 40.3 15.5 170 57-250 30-232 (735)
224 KOG2139 WD40 repeat protein [G 93.3 6.9 0.00015 36.3 23.5 183 54-253 143-367 (445)
225 PF00930 DPPIV_N: Dipeptidyl p 93.3 7.3 0.00016 36.5 18.2 136 171-346 159-320 (353)
226 KOG2394 WD40 protein DMR-N9 [G 93.2 1.5 3.3E-05 42.4 11.7 63 132-211 291-354 (636)
227 smart00135 LY Low-density lipo 93.1 0.24 5.2E-06 30.3 4.5 27 185-211 4-30 (43)
228 KOG2321 WD40 repeat protein [G 93.0 5.2 0.00011 39.3 15.1 113 56-186 138-266 (703)
229 KOG0645 WD40 repeat protein [G 93.0 6.3 0.00014 35.1 24.7 151 49-216 12-179 (312)
230 TIGR03074 PQQ_membr_DH membran 92.9 13 0.00029 38.7 24.4 60 63-123 194-280 (764)
231 KOG0308 Conserved WD40 repeat- 92.9 4.1 8.8E-05 40.5 14.3 172 19-211 88-277 (735)
232 KOG0301 Phospholipase A2-activ 92.8 2.1 4.5E-05 42.7 12.3 97 50-148 178-276 (745)
233 KOG1272 WD40-repeat-containing 92.7 1.9 4.2E-05 41.0 11.5 179 52-253 130-315 (545)
234 COG0823 TolB Periplasmic compo 92.6 6.5 0.00014 38.0 15.5 79 171-250 263-344 (425)
235 PF07494 Reg_prop: Two compone 92.5 0.13 2.9E-06 27.7 2.3 16 235-250 8-23 (24)
236 KOG0647 mRNA export protein (c 92.3 8.4 0.00018 34.9 16.8 35 55-89 76-110 (347)
237 PF13449 Phytase-like: Esteras 92.3 2.1 4.6E-05 39.7 11.6 64 133-208 86-165 (326)
238 KOG0295 WD40 repeat-containing 92.2 9.6 0.00021 35.4 19.0 47 64-111 121-168 (406)
239 PLN00033 photosystem II stabil 92.2 11 0.00024 36.0 29.4 64 55-121 91-162 (398)
240 KOG4328 WD40 protein [Function 92.1 11 0.00024 35.9 18.4 139 55-211 238-391 (498)
241 KOG1009 Chromatin assembly com 92.0 2.7 5.8E-05 39.3 11.4 59 46-105 118-177 (434)
242 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.0 14 0.00031 36.8 26.5 44 286-331 479-522 (527)
243 KOG2321 WD40 repeat protein [G 91.8 1.8 3.8E-05 42.4 10.2 143 55-216 179-343 (703)
244 KOG0265 U5 snRNP-specific prot 91.6 10 0.00022 34.3 19.8 138 56-211 52-196 (338)
245 KOG2110 Uncharacterized conser 91.6 12 0.00025 34.9 14.8 133 171-344 107-250 (391)
246 COG3490 Uncharacterized protei 91.4 11 0.00023 34.1 23.4 60 136-209 118-181 (366)
247 PF07494 Reg_prop: Two compone 91.2 0.31 6.6E-06 26.3 2.8 15 98-112 9-23 (24)
248 KOG4649 PQQ (pyrrolo-quinoline 91.2 11 0.00023 33.7 21.2 138 53-216 14-163 (354)
249 KOG3881 Uncharacterized conser 91.1 3.3 7.1E-05 38.6 10.9 130 54-201 205-343 (412)
250 KOG1538 Uncharacterized conser 91.1 5.4 0.00012 39.9 12.9 56 95-151 15-73 (1081)
251 KOG0294 WD40 repeat-containing 90.9 6.9 0.00015 35.6 12.5 98 52-151 169-271 (362)
252 KOG0265 U5 snRNP-specific prot 90.8 11 0.00023 34.2 13.4 143 55-214 178-333 (338)
253 PF01731 Arylesterase: Arylest 90.6 1.1 2.3E-05 32.9 6.0 37 115-151 37-74 (86)
254 PF00930 DPPIV_N: Dipeptidyl p 90.4 13 0.00029 34.7 15.1 139 56-207 188-345 (353)
255 KOG1539 WD repeat protein [Gen 90.4 24 0.00051 36.4 19.0 137 93-249 449-594 (910)
256 KOG4547 WD40 repeat-containing 90.2 11 0.00024 36.9 14.0 105 166-311 76-186 (541)
257 KOG0284 Polyadenylation factor 90.2 3.7 8.1E-05 38.5 10.4 98 53-151 182-284 (464)
258 smart00135 LY Low-density lipo 90.1 1.1 2.4E-05 27.2 5.2 33 49-81 6-39 (43)
259 COG1520 FOG: WD40-like repeat 89.9 18 0.00038 34.1 24.8 86 63-150 111-205 (370)
260 KOG0305 Anaphase promoting com 89.8 21 0.00046 34.9 16.4 137 54-208 263-406 (484)
261 KOG1036 Mitotic spindle checkp 89.8 15 0.00033 33.3 14.7 170 52-247 95-290 (323)
262 KOG0641 WD40 repeat protein [G 89.5 13 0.00029 32.2 14.1 126 72-216 162-300 (350)
263 KOG0639 Transducin-like enhanc 89.4 2.4 5.2E-05 40.8 8.8 102 48-151 548-653 (705)
264 KOG0650 WD40 repeat nucleolar 89.3 24 0.00053 35.0 15.8 110 93-206 401-538 (733)
265 KOG1445 Tumor-specific antigen 89.3 2.1 4.5E-05 42.4 8.5 138 55-211 631-786 (1012)
266 KOG0305 Anaphase promoting com 88.9 25 0.00053 34.5 20.2 121 62-203 187-315 (484)
267 KOG0281 Beta-TrCP (transducin 88.7 5.2 0.00011 36.8 10.1 43 170-214 340-385 (499)
268 COG4247 Phy 3-phytase (myo-ino 88.7 17 0.00037 32.3 14.1 23 98-120 209-232 (364)
269 KOG1963 WD40 repeat protein [G 88.6 13 0.00029 38.1 13.8 95 55-150 209-311 (792)
270 PF05935 Arylsulfotrans: Aryls 88.0 12 0.00026 36.7 13.2 105 62-186 157-309 (477)
271 PF14517 Tachylectin: Tachylec 87.8 18 0.00039 31.6 14.6 153 40-214 23-201 (229)
272 PF05694 SBP56: 56kDa selenium 87.6 2.4 5.2E-05 40.5 7.6 61 133-210 313-394 (461)
273 KOG0313 Microtubule binding pr 87.5 25 0.00054 32.9 15.2 102 48-151 257-366 (423)
274 KOG0274 Cdc4 and related F-box 87.3 34 0.00073 34.2 24.2 146 47-214 245-397 (537)
275 PF13570 PQQ_3: PQQ-like domai 87.1 1.3 2.8E-05 26.9 3.9 25 55-81 15-39 (40)
276 KOG2919 Guanine nucleotide-bin 87.0 12 0.00026 34.3 11.2 159 50-211 157-361 (406)
277 KOG0649 WD40 repeat protein [G 86.4 23 0.00049 31.3 14.8 63 56-120 119-183 (325)
278 KOG3881 Uncharacterized conser 86.3 29 0.00064 32.5 16.9 86 165-253 221-312 (412)
279 KOG3914 WD repeat protein WDR4 86.1 15 0.00032 34.5 11.6 98 53-151 64-171 (390)
280 KOG0307 Vesicle coat complex C 85.7 9.7 0.00021 40.3 11.3 130 64-211 81-229 (1049)
281 smart00564 PQQ beta-propeller 85.7 1.7 3.7E-05 24.9 3.7 24 62-85 5-28 (33)
282 KOG4378 Nuclear protein COP1 [ 85.5 33 0.00072 33.4 13.8 121 72-211 142-272 (673)
283 PF00058 Ldl_recept_b: Low-den 85.4 2.3 5E-05 26.3 4.4 37 105-141 1-42 (42)
284 KOG0771 Prolactin regulatory e 85.1 32 0.0007 32.4 13.4 54 98-151 149-206 (398)
285 KOG2919 Guanine nucleotide-bin 84.6 27 0.00059 32.1 12.2 45 298-346 239-286 (406)
286 KOG1215 Low-density lipoprotei 84.6 57 0.0012 34.8 17.1 143 52-211 437-588 (877)
287 PF14339 DUF4394: Domain of un 84.3 8 0.00017 34.0 8.7 67 54-121 29-102 (236)
288 KOG1036 Mitotic spindle checkp 84.2 33 0.00071 31.2 15.0 138 53-211 15-155 (323)
289 COG3823 Glutamine cyclotransfe 84.0 26 0.00056 30.3 11.2 154 132-343 46-205 (262)
290 PF06739 SBBP: Beta-propeller 83.9 0.86 1.9E-05 27.6 1.9 19 132-150 13-31 (38)
291 KOG1524 WD40 repeat-containing 83.8 47 0.001 32.7 16.2 86 63-150 75-165 (737)
292 PF07172 GRP: Glycine rich pro 83.8 0.99 2.1E-05 33.7 2.5 18 1-18 1-18 (95)
293 KOG0276 Vesicle coat complex C 83.3 53 0.0011 33.0 19.4 124 62-202 66-196 (794)
294 PF02897 Peptidase_S9_N: Proly 83.3 43 0.00093 31.9 19.8 138 171-346 151-313 (414)
295 KOG0306 WD40-repeat-containing 83.2 58 0.0013 33.4 20.5 166 64-251 425-612 (888)
296 PHA02713 hypothetical protein; 82.4 58 0.0013 32.7 22.1 100 74-186 273-383 (557)
297 PRK13616 lipoprotein LpqB; Pro 82.3 46 0.001 33.7 14.4 143 55-215 400-564 (591)
298 KOG4547 WD40 repeat-containing 81.9 39 0.00085 33.3 13.0 104 66-189 73-183 (541)
299 KOG1272 WD40-repeat-containing 81.6 4.3 9.3E-05 38.8 6.3 79 169-250 272-353 (545)
300 KOG0264 Nucleosome remodeling 81.3 23 0.0005 33.7 10.9 118 43-178 219-347 (422)
301 PF01011 PQQ: PQQ enzyme repea 81.2 2.8 6E-05 25.2 3.4 23 64-86 1-23 (38)
302 KOG1445 Tumor-specific antigen 81.1 6.5 0.00014 39.1 7.5 102 19-121 95-199 (1012)
303 KOG0647 mRNA export protein (c 80.5 46 0.00099 30.4 18.6 104 93-214 28-142 (347)
304 TIGR03074 PQQ_membr_DH membran 79.9 83 0.0018 33.0 17.9 24 63-86 260-283 (764)
305 KOG0267 Microtubule severing p 79.8 14 0.00029 37.5 9.3 97 52-150 71-172 (825)
306 KOG1408 WD40 repeat protein [F 79.7 77 0.0017 32.5 16.5 187 51-250 459-659 (1080)
307 KOG2111 Uncharacterized conser 77.3 56 0.0012 30.0 11.6 81 69-151 155-245 (346)
308 KOG1408 WD40 repeat protein [F 76.9 21 0.00046 36.3 9.7 65 55-120 600-669 (1080)
309 KOG1963 WD40 repeat protein [G 76.8 98 0.0021 32.1 18.9 129 54-202 163-305 (792)
310 KOG4441 Proteins containing BT 76.7 89 0.0019 31.6 19.4 131 63-207 332-481 (571)
311 PF00400 WD40: WD domain, G-be 76.4 7.8 0.00017 22.7 4.5 29 51-79 11-39 (39)
312 PHA02713 hypothetical protein; 76.3 70 0.0015 32.1 13.7 101 74-186 368-497 (557)
313 KOG0281 Beta-TrCP (transducin 75.8 31 0.00068 32.0 9.7 168 55-251 201-378 (499)
314 PF11768 DUF3312: Protein of u 73.8 18 0.00039 35.7 8.2 66 53-120 261-326 (545)
315 KOG2394 WD40 protein DMR-N9 [G 73.3 8.5 0.00018 37.5 5.8 87 53-141 292-384 (636)
316 COG4447 Uncharacterized protei 72.3 76 0.0016 28.7 13.3 23 189-211 170-192 (339)
317 PF05935 Arylsulfotrans: Aryls 72.0 1.1E+02 0.0023 30.2 18.9 76 72-149 127-207 (477)
318 KOG1063 RNA polymerase II elon 71.9 1.2E+02 0.0026 30.9 17.3 57 193-251 320-381 (764)
319 PF02897 Peptidase_S9_N: Proly 71.3 96 0.0021 29.5 20.0 106 98-211 128-248 (414)
320 PF08553 VID27: VID27 cytoplas 70.1 11 0.00023 39.3 6.2 65 55-120 581-645 (794)
321 PF00400 WD40: WD domain, G-be 70.0 17 0.00036 21.2 4.9 25 127-151 7-31 (39)
322 KOG0321 WD40 repeat-containing 69.8 30 0.00064 34.7 8.7 28 53-80 146-174 (720)
323 PHA03098 kelch-like protein; P 69.5 1.2E+02 0.0027 30.0 13.7 111 63-186 389-519 (534)
324 KOG2395 Protein involved in va 68.7 87 0.0019 31.0 11.4 126 63-207 345-489 (644)
325 PHA02790 Kelch-like protein; P 68.2 1.3E+02 0.0027 29.6 20.9 166 63-250 271-454 (480)
326 KOG0302 Ribosome Assembly prot 66.5 90 0.002 29.4 10.6 98 50-148 256-365 (440)
327 PF14269 Arylsulfotran_2: Aryl 66.1 1.1E+02 0.0023 28.1 21.4 38 132-186 144-181 (299)
328 KOG1188 WD40 repeat protein [G 65.4 1.2E+02 0.0025 28.3 12.6 139 169-344 49-198 (376)
329 KOG4378 Nuclear protein COP1 [ 65.4 1.4E+02 0.0031 29.2 18.7 66 54-121 37-107 (673)
330 PF10647 Gmad1: Lipoprotein Lp 65.0 1E+02 0.0022 27.4 15.3 88 53-143 25-123 (253)
331 KOG0322 G-protein beta subunit 64.6 73 0.0016 28.6 9.3 54 132-202 252-306 (323)
332 smart00284 OLF Olfactomedin-li 64.3 1.1E+02 0.0023 27.4 17.7 140 51-211 74-245 (255)
333 COG4880 Secreted protein conta 64.2 1.4E+02 0.0031 28.8 16.3 53 289-344 406-459 (603)
334 KOG4441 Proteins containing BT 63.4 1.5E+02 0.0033 29.9 12.8 98 75-186 398-507 (571)
335 KOG0641 WD40 repeat protein [G 63.3 1E+02 0.0022 26.9 14.8 18 191-209 91-108 (350)
336 COG5276 Uncharacterized conser 62.4 1.3E+02 0.0028 27.6 17.8 88 103-211 95-191 (370)
337 PF14339 DUF4394: Domain of un 62.3 70 0.0015 28.2 8.8 72 93-183 27-108 (236)
338 PF02191 OLF: Olfactomedin-lik 61.7 1.2E+02 0.0026 27.0 18.2 141 51-211 69-240 (250)
339 KOG0269 WD40 repeat-containing 59.4 45 0.00098 34.2 8.0 133 64-216 101-249 (839)
340 KOG1310 WD40 repeat protein [G 58.6 70 0.0015 31.7 8.8 96 54-150 53-167 (758)
341 PRK14131 N-acetylneuraminic ac 57.2 1.7E+02 0.0037 27.5 17.1 88 63-150 38-147 (376)
342 KOG4227 WD40 repeat protein [G 56.9 1.3E+02 0.0029 28.4 10.0 65 55-120 109-176 (609)
343 PF11725 AvrE: Pathogenicity f 56.4 78 0.0017 35.7 9.6 49 71-120 380-428 (1774)
344 KOG3914 WD repeat protein WDR4 56.0 1E+02 0.0023 29.0 9.2 68 52-120 108-178 (390)
345 KOG4497 Uncharacterized conser 55.0 1.2E+02 0.0025 28.2 9.1 63 132-210 92-154 (447)
346 PF05694 SBP56: 56kDa selenium 54.9 36 0.00077 32.8 6.2 59 192-250 314-393 (461)
347 COG5167 VID27 Protein involved 53.3 2.4E+02 0.0052 28.0 11.7 137 53-207 468-621 (776)
348 KOG4328 WD40 protein [Function 52.4 2.3E+02 0.005 27.5 14.7 168 62-249 290-482 (498)
349 PHA03098 kelch-like protein; P 51.8 2.5E+02 0.0055 27.8 20.9 101 74-186 312-422 (534)
350 KOG1063 RNA polymerase II elon 50.6 1.2E+02 0.0025 31.0 9.1 104 46-150 262-380 (764)
351 KOG0642 Cell-cycle nuclear pro 49.6 1.6E+02 0.0035 29.2 9.7 63 23-85 363-430 (577)
352 KOG0642 Cell-cycle nuclear pro 49.4 2.8E+02 0.006 27.6 12.8 96 23-120 313-423 (577)
353 KOG2111 Uncharacterized conser 49.2 2.2E+02 0.0047 26.3 17.3 63 132-211 182-248 (346)
354 KOG0918 Selenium-binding prote 48.2 55 0.0012 31.1 6.2 20 191-210 390-409 (476)
355 PF07676 PD40: WD40-like Beta 48.1 38 0.00082 20.0 3.6 15 194-208 13-27 (39)
356 KOG0307 Vesicle coat complex C 48.1 24 0.00053 37.5 4.3 109 56-182 166-288 (1049)
357 PF10647 Gmad1: Lipoprotein Lp 47.7 2E+02 0.0044 25.4 21.6 160 72-251 1-185 (253)
358 KOG0267 Microtubule severing p 47.1 1.1E+02 0.0024 31.4 8.3 140 49-208 110-257 (825)
359 KOG1230 Protein containing rep 45.6 2.9E+02 0.0062 26.7 14.1 48 63-111 85-139 (521)
360 PF11763 DIPSY: Cell-wall adhe 44.5 1.5E+02 0.0032 22.9 9.1 93 133-250 5-100 (123)
361 KOG2315 Predicted translation 44.4 3.3E+02 0.0072 27.1 14.9 123 73-216 251-381 (566)
362 KOG1524 WD40 repeat-containing 44.3 3.4E+02 0.0073 27.1 18.8 50 99-149 192-244 (737)
363 PF15492 Nbas_N: Neuroblastoma 44.0 2.5E+02 0.0054 25.4 18.1 52 99-150 3-62 (282)
364 TIGR03548 mutarot_permut cycli 44.0 2.5E+02 0.0055 25.6 13.9 87 63-150 123-231 (323)
365 KOG1034 Transcriptional repres 43.6 2E+02 0.0044 26.7 8.8 82 69-151 111-201 (385)
366 TIGR03547 muta_rot_YjhT mutatr 42.4 2.8E+02 0.006 25.6 13.7 87 63-150 17-126 (346)
367 KOG0277 Peroxisomal targeting 41.8 2.6E+02 0.0056 25.1 12.4 95 55-151 64-168 (311)
368 KOG2315 Predicted translation 41.7 3.7E+02 0.008 26.8 14.6 115 171-306 252-373 (566)
369 PF08194 DIM: DIM protein; In 41.7 26 0.00056 20.9 2.0 14 1-14 1-14 (36)
370 KOG1587 Cytoplasmic dynein int 41.1 2.6E+02 0.0056 28.2 10.1 140 54-211 350-508 (555)
371 KOG2114 Vacuolar assembly/sort 40.6 4.7E+02 0.01 27.7 15.3 59 55-113 129-193 (933)
372 PHA02790 Kelch-like protein; P 40.3 3.7E+02 0.008 26.4 19.6 68 104-186 271-347 (480)
373 KOG0270 WD40 repeat-containing 39.7 3.6E+02 0.0077 26.1 10.6 110 55-180 333-451 (463)
374 PRK10115 protease 2; Provision 39.2 4.6E+02 0.01 27.2 15.6 37 170-209 153-191 (686)
375 KOG0290 Conserved WD40 repeat- 38.3 3.1E+02 0.0068 25.1 9.1 104 44-149 191-306 (364)
376 KOG4497 Uncharacterized conser 38.3 1.3E+02 0.0027 28.0 6.7 64 44-109 85-149 (447)
377 KOG0269 WD40 repeat-containing 37.4 5E+02 0.011 27.1 12.4 97 53-151 135-239 (839)
378 PF13964 Kelch_6: Kelch motif 37.2 90 0.0019 19.5 4.4 37 139-186 8-44 (50)
379 PF14779 BBS1: Ciliary BBSome 35.9 1.4E+02 0.003 26.8 6.6 55 64-119 196-255 (257)
380 PF11768 DUF3312: Protein of u 34.6 4.8E+02 0.01 26.1 13.2 45 169-214 280-324 (545)
381 PF12894 Apc4_WD40: Anaphase-p 33.7 1.2E+02 0.0025 19.2 4.3 26 55-80 15-40 (47)
382 KOG0264 Nucleosome remodeling 33.4 4.5E+02 0.0097 25.3 13.7 136 55-208 181-335 (422)
383 COG4590 ABC-type uncharacteriz 33.2 1.8E+02 0.0039 28.4 7.2 27 190-216 358-386 (733)
384 KOG0302 Ribosome Assembly prot 33.1 4.3E+02 0.0094 25.1 11.7 103 94-214 213-329 (440)
385 smart00320 WD40 WD40 repeats. 33.0 68 0.0015 16.8 3.1 25 54-78 15-39 (40)
386 PF08309 LVIVD: LVIVD repeat; 31.9 1.3E+02 0.0028 18.6 4.8 31 316-347 4-35 (42)
387 PRK10626 hypothetical protein; 30.1 1.8E+02 0.0039 25.7 6.2 28 1-28 1-30 (239)
388 COG4993 Gcd Glucose dehydrogen 29.9 2.6E+02 0.0056 28.5 7.8 85 25-115 365-490 (773)
389 KOG3621 WD40 repeat-containing 29.6 1.5E+02 0.0032 30.3 6.2 87 64-151 46-145 (726)
390 KOG0322 G-protein beta subunit 28.2 1.2E+02 0.0026 27.3 4.8 52 98-149 256-311 (323)
391 KOG2314 Translation initiation 27.2 6.5E+02 0.014 25.3 9.9 61 190-251 493-557 (698)
392 KOG0321 WD40 repeat-containing 26.7 3E+02 0.0064 28.0 7.6 79 62-143 63-156 (720)
393 TIGR02171 Fb_sc_TIGR02171 Fibr 26.1 8.4E+02 0.018 26.2 15.2 88 64-151 320-421 (912)
394 KOG1379 Serine/threonine prote 25.9 3.3E+02 0.0072 25.2 7.3 51 99-149 174-231 (330)
395 PF07569 Hira: TUP1-like enhan 25.4 4.4E+02 0.0096 22.8 9.1 24 62-85 21-44 (219)
396 PF14157 YmzC: YmzC-like prote 25.2 1.1E+02 0.0023 20.9 3.0 16 171-186 42-57 (63)
397 KOG3567 Peptidylglycine alpha- 25.0 1.1E+02 0.0023 29.8 4.2 19 233-251 468-486 (501)
398 PF05567 Neisseria_PilC: Neiss 25.0 3.2E+02 0.0069 25.5 7.5 57 288-347 180-244 (335)
399 PF14269 Arylsulfotran_2: Aryl 24.9 5.3E+02 0.012 23.5 12.2 34 52-86 144-178 (299)
400 TIGR02608 delta_60_rpt delta-6 24.3 1.8E+02 0.0039 19.2 4.1 41 235-305 4-44 (55)
401 KOG4283 Transcription-coupled 22.7 6.1E+02 0.013 23.4 11.8 148 46-211 183-357 (397)
402 KOG2314 Translation initiation 21.9 8.3E+02 0.018 24.6 9.7 95 98-206 450-554 (698)
403 KOG0276 Vesicle coat complex C 21.9 8.7E+02 0.019 24.9 19.4 148 55-217 17-171 (794)
404 TIGR03803 Gloeo_Verruco Gloeo_ 21.7 1.9E+02 0.004 17.0 4.5 19 286-306 14-32 (34)
405 KOG0313 Microtubule binding pr 21.2 7.2E+02 0.016 23.6 21.7 87 63-150 115-212 (423)
406 KOG1645 RING-finger-containing 20.8 1.3E+02 0.0029 28.6 3.9 31 54-84 238-269 (463)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=5.4e-46 Score=334.10 Aligned_cols=304 Identities=35% Similarity=0.565 Sum_probs=252.1
Q ss_pred CCcCccCceEecCCCcCCCceEEEeeCCC-eEEEEEcCCEEEEEEcC--CC--e-----EEEEeecCCccccceEEcCCC
Q 018705 36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILH--NE--T-----LVNWKHIDSQSLLGLTTTKDG 105 (351)
Q Consensus 36 ~~~~l~~~~~i~~~~~~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~--~g--~-----~~~~~~~~~~p~~gl~~d~~G 105 (351)
+++.+...|.+..+....|+.+.+. ++. ..|.+..+|+|-+.+.. .. . .......|+||. ||+++.+|
T Consensus 49 ~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~g 126 (376)
T KOG1520|consen 49 PNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKG 126 (376)
T ss_pred cccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCC
Confidence 4555666665555555555555555 333 36778778877776641 10 0 111234679999 99999887
Q ss_pred -CEEEEeCCCCeEEEcCCC--eEEecCCC-----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705 106 -GVILCDNEKGLLKVTEEG--VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP 177 (351)
Q Consensus 106 -~L~v~d~~~gl~~~~~~g--~~~l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 177 (351)
+|||||.+.|++.++++| .+.+.+.. .+.|++.++++|.+||||++++|+.+++...+++++++||+++||+
T Consensus 127 gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~ 206 (376)
T KOG1520|consen 127 GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDP 206 (376)
T ss_pred CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecC
Confidence 999999999999999855 55555543 7899999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCC
Q 018705 178 KLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN 253 (351)
Q Consensus 178 ~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~ 253 (351)
.++.++++.+++.+|||+++|+|++++.++|+.. |||+++++.|+.++|++++||+||||..+++|++||+....+
T Consensus 207 ~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 207 STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR 286 (376)
T ss_pred cccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence 9999999999999999999999999999999876 899999999999999989999999999999999999999999
Q ss_pred chhhhhhhcChhHHHHHHhccchhhcccCCC--CCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec
Q 018705 254 QTGVRAIQKCREKWELLDAYPGLISLLLPMG--SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL 331 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~ 331 (351)
+..++++.++|++|+++.+++....++..+. ..++..|.+.|. +|+++++||++++.....++.+.+++|+||+||.
T Consensus 287 ~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~-~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~ 365 (376)
T KOG1520|consen 287 STLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDE-TGKILESLHDKEGKVITLVSEVGEHDGHLYIGSL 365 (376)
T ss_pred chHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecC-CCcEEEEEecCCCCceEEEEEEeecCCeEEEccc
Confidence 9999999999999999999866654333221 123356677778 9999999999999887778888888999999999
Q ss_pred CCCeEEEEeCC
Q 018705 332 QSNFIGILPLD 342 (351)
Q Consensus 332 ~~~~i~~~~~~ 342 (351)
..+++++++++
T Consensus 366 ~~p~i~~lkl~ 376 (376)
T KOG1520|consen 366 FNPYIARLKLP 376 (376)
T ss_pred CcceeEEEecC
Confidence 99999999974
No 2
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.6e-25 Score=203.27 Aligned_cols=236 Identities=22% Similarity=0.348 Sum_probs=180.1
Q ss_pred cCCCceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-e-EE
Q 018705 51 VNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EA 126 (351)
Q Consensus 51 ~~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~-~~ 126 (351)
..-.|+..++++.+ .+|++...++|+++++.+|+.+.+..+...+. +..+|..|+|+++..+ +++++ .++ . +.
T Consensus 24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~ 100 (307)
T COG3386 24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEHG--VRLLDPDTGGKITL 100 (307)
T ss_pred cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEccc--cEEEeccCCceeEE
Confidence 56789999997766 57899999999999998898989988888888 9999999999999865 44555 444 4 66
Q ss_pred ecCCC-----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705 127 IVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE 201 (351)
Q Consensus 127 l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg 201 (351)
+.... +++||+.++++|++||+++.+ +. ....+..+.|.||++||.++..+.+...+..|||||||||+
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC
Confidence 55432 899999999999999999873 11 22333456789999999655555555559999999999999
Q ss_pred CEEEEEecce----eEEee---cCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhc
Q 018705 202 DFVVVCESWK----RYWLK---GDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY 273 (351)
Q Consensus 202 ~~lyv~~~~~----~~~i~---~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
+++|++++.. ++++. ....++ ...+.+..+|.|||+++|++|+||++....
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--------------------- 233 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--------------------- 233 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------------------
Confidence 9999999975 55554 122222 233444567999999999999999754321
Q ss_pred cchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC---CEEEEEecCCCe
Q 018705 274 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQSNF 335 (351)
Q Consensus 274 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~~~~~~ 335 (351)
-+.|.+|+| +|+.+..+..|. ..++++++.+ ++|||++...+.
T Consensus 234 --------------g~~v~~~~p-dG~l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 234 --------------GGRVVRFNP-DGKLLGEIKLPV----KRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred --------------CceEEEECC-CCcEEEEEECCC----CCCccceEeCCCcCEEEEEecCCCC
Confidence 137999999 999999998875 2466777665 899999987744
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.95 E-value=1.8e-25 Score=199.70 Aligned_cols=223 Identities=27% Similarity=0.393 Sum_probs=166.1
Q ss_pred CceEEEeeCCCeEE-EEEcCCEEEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCCCeEEEcC-CC-eEEecC
Q 018705 54 PEDVSVVVSKGALY-TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE-EG-VEAIVP 129 (351)
Q Consensus 54 pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~~-~g-~~~l~~ 129 (351)
||++++|+.++.|| ++...++|+++++.+++.+.+.... |. |++++ ++|+||+++. .++..++. ++ .+.+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence 79999996466665 5667899999999888776655443 88 99999 7899999996 46677784 66 555432
Q ss_pred ------CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705 130 ------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (351)
Q Consensus 130 ------~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ 203 (351)
....||++++|++|++|+|++...... ....|+|++++++ ++++.+...+..||||++++|++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence 237899999999999999997522110 0011789999998 888888888999999999999999
Q ss_pred EEEEecce----eEEeecCC--CCceeEEec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccc
Q 018705 204 VVVCESWK----RYWLKGDR--AGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG 275 (351)
Q Consensus 204 lyv~~~~~----~~~i~~~~--~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
||++++.. +|.+.... ....+.+.+ ...+.|||+++|++|+||++....
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----------------------- 204 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----------------------- 204 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------
Confidence 99999877 44444221 233455543 233469999999999999997642
Q ss_pred hhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE---CCEEEEEec
Q 018705 276 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASL 331 (351)
Q Consensus 276 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~ig~~ 331 (351)
+.|.+||| +|+.+..+..|. ..++++++. .++|||++.
T Consensus 205 -------------~~I~~~~p-~G~~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 205 -------------GRIVVFDP-DGKLLREIELPV----PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------------TEEEEEET-TSCEEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred -------------CEEEEECC-CccEEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence 47999999 999999998762 257888874 378999985
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.85 E-value=3.8e-19 Score=152.94 Aligned_cols=242 Identities=16% Similarity=0.144 Sum_probs=178.4
Q ss_pred ceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705 43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121 (351)
Q Consensus 43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~ 121 (351)
...++......|.+++.++++-.+|.+...|.|-++|+.+|+++.+. ..+..|. +|.+++||.+||+|.+..|.|+++
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dp 131 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDP 131 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecC
Confidence 34555655678999999954446777888889999999999998875 4456899 999999999999999999999996
Q ss_pred -CC-eEEecCCC----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-Cccccce
Q 018705 122 -EG-VEAIVPDA----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANG 194 (351)
Q Consensus 122 -~g-~~~l~~~~----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ng 194 (351)
+. ++.+.-.. ...|..++|++|++|||... |---++||.++.++++.. ....|+|
T Consensus 132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyG 193 (353)
T COG4257 132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYG 193 (353)
T ss_pred cccceEEeecccccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcc
Confidence 66 77764332 67888999999999999865 223378888777776643 3457999
Q ss_pred EEEcCCCCEEEEEecce-eEEeecCCCCceeEEec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHH
Q 018705 195 IALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD 271 (351)
Q Consensus 195 i~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~ 271 (351)
||..|||. +|+++... .+-..++..+..+.+.. .+......+..|+.|++|+++..
T Consensus 194 i~atpdGs-vwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg-------------------- 252 (353)
T COG4257 194 ICATPDGS-VWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-------------------- 252 (353)
T ss_pred eEECCCCc-EEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC--------------------
Confidence 99999997 99998665 33333344455555532 12223456778999999999643
Q ss_pred hccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEE-EECCEEEEEecCCCeEEEEeCCC
Q 018705 272 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASLQSNFIGILPLDG 343 (351)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~ig~~~~~~i~~~~~~~ 343 (351)
.+.+.+||| .-+.-.+|.-|... ....++. ...|++|+.....+.|.||+..+
T Consensus 253 ----------------~g~l~rfdP-s~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 253 ----------------TGSLHRFDP-SVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ----------------CceeeEeCc-ccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecCccc
Confidence 246899999 55545677665432 2234444 45699999999999999998543
No 5
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.77 E-value=8.3e-19 Score=128.66 Aligned_cols=84 Identities=54% Similarity=0.965 Sum_probs=69.2
Q ss_pred ccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--
Q 018705 135 NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-- 211 (351)
Q Consensus 135 n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-- 211 (351)
|+++++++ |.||||+++.+|..+++..+++++.++|+|++|||++++++++.+++.+||||++++|+++++|+|+..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 899999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --eEEeecC
Q 018705 212 --RYWLKGD 218 (351)
Q Consensus 212 --~~~i~~~ 218 (351)
|||++++
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 8998753
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.76 E-value=1.8e-15 Score=158.87 Aligned_cols=240 Identities=18% Similarity=0.208 Sum_probs=163.3
Q ss_pred CcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeec---------------CCccccceEEcCCCC-EEEEeC
Q 018705 50 CVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI---------------DSQSLLGLTTTKDGG-VILCDN 112 (351)
Q Consensus 50 ~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~---------------~~~p~~gl~~d~~G~-L~v~d~ 112 (351)
.+..|.++++|+.++.+||+. .+++|.++|. +|+....... ..+|. |+++|++|+ |||+|.
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADT 643 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeC
Confidence 378899999997678898865 5788999998 4544332211 13699 999998875 899998
Q ss_pred CCC-eEEEcC-CC-eEEecCC-----------------CCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCce
Q 018705 113 EKG-LLKVTE-EG-VEAIVPD-----------------ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171 (351)
Q Consensus 113 ~~g-l~~~~~-~g-~~~l~~~-----------------~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~ 171 (351)
.++ +.+++. ++ ++++... .+.|.++++++ +|.+|+++.. +++
T Consensus 644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~ 706 (1057)
T PLN02919 644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQ 706 (1057)
T ss_pred CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCe
Confidence 765 555664 56 6665321 15789999999 6799999976 357
Q ss_pred EEEEeCCCCeEEEee---------------cCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec-------
Q 018705 172 LRKYDPKLKETTVLH---------------EGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE------- 228 (351)
Q Consensus 172 l~~~d~~~~~~~~~~---------------~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~------- 228 (351)
|++||+.++.+..+. ..+..|+||+++++++.|||++..+ ++++-+...+.......
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 888887766554432 1245799999999999999999876 44433222222111110
Q ss_pred --------------cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEE
Q 018705 229 --------------NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV 294 (351)
Q Consensus 229 --------------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 294 (351)
..-..|.++++|++|++||+... .+.|.+|
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------------------------------------N~rIrvi 830 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------------------------------------NHKIKKL 830 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------------------------------------CCEEEEE
Confidence 01125889999999999999754 2368888
Q ss_pred ECCCCeEEEEEECC------CC----CcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCC
Q 018705 295 DGNDGKIIRDFNDP------DA----TYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPE 345 (351)
Q Consensus 295 ~~~~g~~~~~~~~~------~g----~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~ 345 (351)
|+ ++..+..+... +| ..+..++++..+ +|+||++...++.|.++++.+..
T Consensus 831 D~-~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 831 DP-ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EC-CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 98 55444443321 11 112345666654 68999999999999999987653
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.70 E-value=1.5e-14 Score=124.76 Aligned_cols=247 Identities=8% Similarity=0.046 Sum_probs=171.1
Q ss_pred CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC----CccccceEEcCCCCEEEEeC
Q 018705 37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILCDN 112 (351)
Q Consensus 37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~----~~p~~gl~~d~~G~L~v~d~ 112 (351)
|.+-..+++++.|....|.+|.++| +|..|+......|.|+|+++.++++|.-+. .+-. ...||++|+||++..
T Consensus 89 dP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q 166 (353)
T COG4257 89 DPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQ 166 (353)
T ss_pred CCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeec
Confidence 3444557888888889999999995 566666554447999999999999886443 3445 788999999999875
Q ss_pred CCCeEEEcC-CC-eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--
Q 018705 113 EKGLLKVTE-EG-VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-- 187 (351)
Q Consensus 113 ~~gl~~~~~-~g-~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-- 187 (351)
.+--=++++ .+ ++++.... ..|++||+.+||.+|++.-. .+.|-++||.++..+++..
T Consensus 167 ~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~ 229 (353)
T COG4257 167 IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPN 229 (353)
T ss_pred cccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCC
Confidence 432336676 56 88876554 78999999999999998753 2468899998876555432
Q ss_pred C-ccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEe-ccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705 188 G-FYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFI-ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 264 (351)
Q Consensus 188 ~-~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~ 264 (351)
. -....+|-.|+.|+ +|+++..+ +....++.......+. .+....|+.+.+|+.|++|......
T Consensus 230 ~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a------------ 296 (353)
T COG4257 230 ALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA------------ 296 (353)
T ss_pred cccccccccccCccCc-EEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc------------
Confidence 1 12334566788886 99987766 4333333222222221 1222357889999999999986542
Q ss_pred hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCC
Q 018705 265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD 342 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~ 342 (351)
+.+.+||| ....+.+|..+.- ......+--..|++|++...-+.+.+++..
T Consensus 297 ------------------------gai~rfdp-eta~ftv~p~pr~--n~gn~ql~gr~ge~W~~e~gvd~lv~~r~~ 347 (353)
T COG4257 297 ------------------------GAIGRFDP-ETARFTVLPIPRP--NSGNIQLDGRPGELWFTEAGVDALVTTRIG 347 (353)
T ss_pred ------------------------CceeecCc-ccceEEEecCCCC--CCCceeccCCCCceeecccCcceeEEEEee
Confidence 46899999 7777888876542 222222223469999999888888877744
No 8
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.67 E-value=2.8e-14 Score=120.50 Aligned_cols=227 Identities=18% Similarity=0.222 Sum_probs=150.2
Q ss_pred ceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC--CEEEEeCCCCeEEEcCCC----eEEe
Q 018705 55 EDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG--GVILCDNEKGLLKVTEEG----VEAI 127 (351)
Q Consensus 55 e~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G--~L~v~d~~~gl~~~~~~g----~~~l 127 (351)
|++.|+...+ ++||+...|.|.|+|..+.++.+. ...+.|.-|.++--.| +.+++.-+.....++=+| ..++
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~ 96 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVY 96 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeee
Confidence 7778875544 678999999999999877666443 2223322155443222 455554444333333222 2222
Q ss_pred cC-----C---CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705 128 VP-----D---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK 199 (351)
Q Consensus 128 ~~-----~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~ 199 (351)
.. . .++.||--+||+|+.|...++. +. +.+| ...|.|+++-+. ++++.+.....-+||++++.
T Consensus 97 ~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~ 167 (310)
T KOG4499|consen 97 RTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWLAG-HQVELIWNCVGISNGLAWDS 167 (310)
T ss_pred eeccccCchHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEeccC-CCceeeehhccCCccccccc
Confidence 22 1 1789999999999998877642 11 1111 224567777764 78888888888999999999
Q ss_pred CCCEEEEEecce----eEE--eecCCCCceeEEec------cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHH
Q 018705 200 NEDFVVVCESWK----RYW--LKGDRAGILDAFIE------NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW 267 (351)
Q Consensus 200 dg~~lyv~~~~~----~~~--i~~~~~~~~~~~~~------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~ 267 (351)
|.+.+|+.++.+ .|. ..+....+.+...+ ..+-.|||+++|.+|+|||++.++
T Consensus 168 d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--------------- 232 (310)
T KOG4499|consen 168 DAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--------------- 232 (310)
T ss_pred cCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC---------------
Confidence 999999999887 132 22222222222211 123479999999999999999863
Q ss_pred HHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC---CEEEEEec
Q 018705 268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASL 331 (351)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~~ 331 (351)
+.|.++||.+||++..+--| ...++++++.+ +.||+++.
T Consensus 233 ---------------------~~V~~~dp~tGK~L~eiklP----t~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 233 ---------------------GTVQKVDPTTGKILLEIKLP----TPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ---------------------cEEEEECCCCCcEEEEEEcC----CCceEEEEecCCCccEEEEEeh
Confidence 47999999999999988766 34688888765 56888774
No 9
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.60 E-value=9.4e-14 Score=123.94 Aligned_cols=176 Identities=20% Similarity=0.351 Sum_probs=124.5
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec------CCccccceEEcCCCCEEEEeCCC---------CeE
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGGVILCDNEK---------GLL 117 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~------~~~p~~gl~~d~~G~L~v~d~~~---------gl~ 117 (351)
.|.+++++..++.+|++...+ +..+|+.+++++.+... ..+|+ .+++|++|+||+++... .++
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceE
Confidence 389999995679999998866 67779888988766432 34688 99999999999998642 488
Q ss_pred EEcCCC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC--CCeE---EEee---c
Q 018705 118 KVTEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET---TVLH---E 187 (351)
Q Consensus 118 ~~~~~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~---~~~~---~ 187 (351)
++++++ .+.+......||+|++++|| .+|++++. .++|++|+.+ ++++ +.+. .
T Consensus 119 ~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 119 RIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp EEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred EECCCCeEEEEecCcccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeeeEEEcCC
Confidence 888778 66666666899999999999 58999976 4689998764 3322 2232 1
Q ss_pred CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCC-CCCCceEEC-CC-CCEEEEEe
Q 018705 188 GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLP-GGPDNINLA-PD-GSFWIGLI 250 (351)
Q Consensus 188 ~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~-g~pd~i~~d-~~-G~lwva~~ 250 (351)
....|+|++++.+|+ ||++...+ +++.-++. |+....+ .+| ..|.++++. ++ +.|||++.
T Consensus 182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i-~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI-ELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE-E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE-cCCCCCEEEEEEECCCCCEEEEEeC
Confidence 223699999999997 99998755 55544443 5533222 233 367889983 44 56999864
No 10
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.56 E-value=4.1e-12 Score=119.96 Aligned_cols=164 Identities=21% Similarity=0.252 Sum_probs=115.3
Q ss_pred ceEecC-CCcCCCceEEEeeCCCeEEEEEc------------CC-EEEEEEcCC--Ce---EEEEeecCCccccceEEcC
Q 018705 43 LTKLGE-GCVNHPEDVSVVVSKGALYTATR------------DG-WVKYFILHN--ET---LVNWKHIDSQSLLGLTTTK 103 (351)
Q Consensus 43 ~~~i~~-~~~~~pe~i~~d~~~g~lyv~~~------------~g-~I~~~d~~~--g~---~~~~~~~~~~p~~gl~~d~ 103 (351)
+++++. ..+..|.+|++| .+|++||+.. .+ +|++++..+ |+ .+.+......|. ||++.+
T Consensus 4 ~~l~A~~p~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~ 81 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAV 81 (367)
T ss_pred EEEEECCCccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEec
Confidence 445554 357899999999 6899999852 23 899997543 43 355555566789 999999
Q ss_pred CCCEEEEeCCCCeEEEc-C------CC-eEEecCCC--------CCcccEEEccCCcEEEEeCCCc--cCCccccccccc
Q 018705 104 DGGVILCDNEKGLLKVT-E------EG-VEAIVPDA--------SFTNDVIAASDGTLYFTVASTK--YTPTDFYKDMAE 165 (351)
Q Consensus 104 ~G~L~v~d~~~gl~~~~-~------~g-~~~l~~~~--------~~~n~l~~d~dG~ly~t~~~~~--~~~~~~~~~~~~ 165 (351)
+| |||++.. .++++. . ++ .+++.+.. ..++++++++||.|||++.... ............
T Consensus 82 ~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 82 GG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred CC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcc
Confidence 99 9998754 688773 2 22 33343321 4588999999999999987421 111000001111
Q ss_pred ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
....|.+++++|++++.+.+..++.+|+|++++++|+ +|+++...
T Consensus 160 ~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~ 204 (367)
T TIGR02604 160 QGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDD 204 (367)
T ss_pred cccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCC
Confidence 2234789999999999999999999999999999998 89988754
No 11
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.56 E-value=1.9e-12 Score=136.29 Aligned_cols=182 Identities=14% Similarity=0.195 Sum_probs=127.5
Q ss_pred cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeec-----------------CCccccceEEcC-CCCEEEEe
Q 018705 51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-----------------DSQSLLGLTTTK-DGGVILCD 111 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~-----------------~~~p~~gl~~d~-~G~L~v~d 111 (351)
+..|.+|++|++++.+||+.. +++|.++|..++.++++... ...|. ++++|+ +|.+||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence 567999999976778898665 56799999878877665321 23688 999998 67999999
Q ss_pred CCCC-eEEEcC-CC-eEEecCC---------------CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceE
Q 018705 112 NEKG-LLKVTE-EG-VEAIVPD---------------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQL 172 (351)
Q Consensus 112 ~~~g-l~~~~~-~g-~~~l~~~---------------~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l 172 (351)
..++ +++++. ++ ...+... ...|++|+++++|. ||+++.. +++|
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I 764 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI 764 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence 7654 555564 55 5443211 15799999999985 9999975 4578
Q ss_pred EEEeCCCCeEEEeec----------------------CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec-
Q 018705 173 RKYDPKLKETTVLHE----------------------GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE- 228 (351)
Q Consensus 173 ~~~d~~~~~~~~~~~----------------------~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~- 228 (351)
.+||++++..+.+.. .+..|.||+++++|+ +||+++.+ ++.+-+...+....+..
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 888887665443221 134789999999998 99999877 55443332233222211
Q ss_pred cC------------CCCCCceEECCCCCEEEEEec
Q 018705 229 NL------------PGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 229 ~~------------~g~pd~i~~d~~G~lwva~~~ 251 (351)
+. -..|.++++|++|++||+...
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 10 125889999999999999754
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=5.8e-10 Score=104.53 Aligned_cols=246 Identities=19% Similarity=0.293 Sum_probs=150.0
Q ss_pred cCccCceEecCCCcCCCceEEEeeCCCeEEEEEc----CCEEEEE--EcCCCeEEEEe---ecCCccccceEEcCCCC-E
Q 018705 38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR----DGWVKYF--ILHNETLVNWK---HIDSQSLLGLTTTKDGG-V 107 (351)
Q Consensus 38 ~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~----~g~I~~~--d~~~g~~~~~~---~~~~~p~~gl~~d~~G~-L 107 (351)
..|...+.+.. ...|..++++++++.||+... .|.|..+ +.++|+++... ..+..|. .+++|++|+ |
T Consensus 25 g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l 101 (345)
T PF10282_consen 25 GTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFL 101 (345)
T ss_dssp TEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEE
T ss_pred CCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEE
Confidence 45555555444 468999999988899999876 4677555 55447765542 3456788 999999985 7
Q ss_pred EEEeCCCCeE---EEcCCC-eEEe---c-C----------CCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccC
Q 018705 108 ILCDNEKGLL---KVTEEG-VEAI---V-P----------DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKP 168 (351)
Q Consensus 108 ~v~d~~~gl~---~~~~~g-~~~l---~-~----------~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~ 168 (351)
|+++...+-+ .++.+| +... . . ....|-.+.++|||+ +|++|-+
T Consensus 102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG----------------- 164 (345)
T PF10282_consen 102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG----------------- 164 (345)
T ss_dssp EEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------
T ss_pred EEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------
Confidence 8888766543 334456 3221 1 0 115677899999985 8888865
Q ss_pred CceEEEEeCC--CCeEEE----eecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEE--eccCC----C
Q 018705 169 YGQLRKYDPK--LKETTV----LHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAF--IENLP----G 232 (351)
Q Consensus 169 ~g~l~~~d~~--~~~~~~----~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~--~~~~~----g 232 (351)
..+|+.|+.+ ++++.. .......|..++|+||++++|+..... .|.+.. ..+..+.. ...++ +
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP-SDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEESCETTSCS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc-cCCceeEEEEeeeccccccc
Confidence 3466666543 333433 224456799999999999999976544 455542 12332221 11111 1
Q ss_pred --CCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEE--EEEEC
Q 018705 233 --GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKII--RDFND 307 (351)
Q Consensus 233 --~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~--~~~~~ 307 (351)
.+.+|+++++|+ ||++.-.. ..-.++.+|+++|+.. ..+..
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~----------------------------------~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGS----------------------------------NSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTT----------------------------------TEEEEEEECTTTTTEEEEEEEEE
T ss_pred cCCceeEEEecCCCEEEEEeccC----------------------------------CEEEEEEEecCCCceEEEEEEeC
Confidence 356789999997 78876431 1124666766456542 23332
Q ss_pred CCCCcccceeEEEE--ECCEEEEEecCCCeEEEEeCC
Q 018705 308 PDATYISFVTSAAE--FDGNLYLASLQSNFIGILPLD 342 (351)
Q Consensus 308 ~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~~~ 342 (351)
.|. .+..+.. ++..||+++-.++.|.+|+..
T Consensus 290 -~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 290 -GGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -SSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred -CCC---CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 232 3455554 567899999999999999864
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.36 E-value=1.5e-09 Score=101.18 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=146.6
Q ss_pred cCccCceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcC-CCeEEEEe--ecCCccccceEEcCCCC-EEEEeC
Q 018705 38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLVNWK--HIDSQSLLGLTTTKDGG-VILCDN 112 (351)
Q Consensus 38 ~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~-~g~~~~~~--~~~~~p~~gl~~d~~G~-L~v~d~ 112 (351)
..+..++.+..+ ..|..++++|++..||++.. +++|..|+.+ +|+++... ...+.|. +++++++|+ ||++..
T Consensus 23 g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 23 GALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASY 99 (330)
T ss_pred CceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEc
Confidence 455566666553 56899999988888999764 6778766653 45554322 2345788 999999996 777775
Q ss_pred CCCe-EEEc--CCC-e-EEec--CCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEE
Q 018705 113 EKGL-LKVT--EEG-V-EAIV--PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETT 183 (351)
Q Consensus 113 ~~gl-~~~~--~~g-~-~~l~--~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~ 183 (351)
..+. ..++ .+| . +... .....|..++++|+| .+|+++.. .+.|..||.++ +.+.
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLV 162 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCccc
Confidence 5443 3332 345 2 2221 112468889999998 57777754 45777777654 3322
Q ss_pred E------eecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEec--cCC------CCCCceEECCCCC-
Q 018705 184 V------LHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIE--NLP------GGPDNINLAPDGS- 244 (351)
Q Consensus 184 ~------~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~--~~~------g~pd~i~~d~~G~- 244 (351)
. -......|.+++++|||+++|+++... .|.+... .++.+.... ..| .++..+.++++|+
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 1 112345789999999999999987633 3444421 222222111 111 1334588899997
Q ss_pred EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEE-CCCCCcccceeEEE--E
Q 018705 245 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN-DPDATYISFVTSAA--E 321 (351)
Q Consensus 245 lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~--~ 321 (351)
+|++....+ .-.++.++. ++.....+. .+.+. ....+. .
T Consensus 242 lyv~~~~~~----------------------------------~I~v~~i~~-~~~~~~~~~~~~~~~---~p~~~~~~~ 283 (330)
T PRK11028 242 LYACDRTAS----------------------------------LISVFSVSE-DGSVLSFEGHQPTET---QPRGFNIDH 283 (330)
T ss_pred EEEecCCCC----------------------------------eEEEEEEeC-CCCeEEEeEEEeccc---cCCceEECC
Confidence 788743211 124566676 553332221 11221 122233 3
Q ss_pred ECCEEEEEecCCCeEEEEeCCC
Q 018705 322 FDGNLYLASLQSNFIGILPLDG 343 (351)
Q Consensus 322 ~~g~L~ig~~~~~~i~~~~~~~ 343 (351)
++..||+++...+.|..+++..
T Consensus 284 dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCEEEEEEccCCcEEEEEEcC
Confidence 4678999988788899988753
No 14
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=6.2e-08 Score=87.15 Aligned_cols=251 Identities=17% Similarity=0.193 Sum_probs=150.5
Q ss_pred CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcC---CEE--EEEEcCCCeEEEEe---ecCCccccceEEcCCCC-E
Q 018705 37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRD---GWV--KYFILHNETLVNWK---HIDSQSLLGLTTTKDGG-V 107 (351)
Q Consensus 37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~---g~I--~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~-L 107 (351)
...++..+++.. ...|.-++++++...||+...+ |+| +++|+++|+++... ..+..|. -+++|++|+ |
T Consensus 27 ~g~l~~~~~v~~--~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~v 103 (346)
T COG2706 27 TGELSLLQLVAE--LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFV 103 (346)
T ss_pred ccccchhhhccc--cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEE
Confidence 345666676765 5789999999877799997654 555 56777678886553 2334457 899999996 6
Q ss_pred EEEeCCCCeEEEc---CCC-eEEe----cCCC---------CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCC
Q 018705 108 ILCDNEKGLLKVT---EEG-VEAI----VPDA---------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPY 169 (351)
Q Consensus 108 ~v~d~~~gl~~~~---~~g-~~~l----~~~~---------~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~ 169 (351)
+++....|.+.+. .+| +... .... ..+-...++|+|+ ++++|-+ .
T Consensus 104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~ 166 (346)
T COG2706 104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------T 166 (346)
T ss_pred EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------C
Confidence 6777777766665 356 3221 1110 2255567899995 5555533 3
Q ss_pred ceEEEEeCCCCeEEEe----ecCccccceEEEcCCCCEEEE-Eecce---eEEeecCCCCceeEEec--cCC----CC--
Q 018705 170 GQLRKYDPKLKETTVL----HEGFYFANGIALSKNEDFVVV-CESWK---RYWLKGDRAGILDAFIE--NLP----GG-- 233 (351)
Q Consensus 170 g~l~~~d~~~~~~~~~----~~~~~~~ngi~~~~dg~~lyv-~~~~~---~~~i~~~~~~~~~~~~~--~~~----g~-- 233 (351)
.+++.|+.+.|.++.. ......|.-|+|+|+++..|+ +|-++ .+..+ +..++.+.+.. -+| |.
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~-~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN-PAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc-CCCceEEEeeeeccCccccCCCCc
Confidence 4777776665655432 244567889999999999998 55555 23333 22455443321 122 11
Q ss_pred CCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE--ECCCC
Q 018705 234 PDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF--NDPDA 310 (351)
Q Consensus 234 pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~--~~~~g 310 (351)
.-.|.++++|+ ||++. .+- ..=.++++|+ ++..++-. ...+|
T Consensus 246 ~aaIhis~dGrFLYasN-Rg~---------------------------------dsI~~f~V~~-~~g~L~~~~~~~teg 290 (346)
T COG2706 246 AAAIHISPDGRFLYASN-RGH---------------------------------DSIAVFSVDP-DGGKLELVGITPTEG 290 (346)
T ss_pred eeEEEECCCCCEEEEec-CCC---------------------------------CeEEEEEEcC-CCCEEEEEEEeccCC
Confidence 12367899998 55543 210 0115788899 64434332 22233
Q ss_pred CcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705 311 TYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 311 ~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~ 344 (351)
. .+.--.+...++.|++..=.++-|.+|.....
T Consensus 291 ~-~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 291 Q-FPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred c-CCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 2 22222333445677777777777888876554
No 15
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=5.6e-09 Score=95.37 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=113.3
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEee-----cCCccccceEEcCCCCEEEEeCC-----C-------C
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKH-----IDSQSLLGLTTTKDGGVILCDNE-----K-------G 115 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~-----~~~~p~~gl~~d~~G~L~v~d~~-----~-------g 115 (351)
+....++ ++++|++... | +.+++.+++.. +.+.. ...+|+ ...++++|++|+++.. . .
T Consensus 69 ~~~~~~d-~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~~~~r~N-D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 69 SSGALID-AGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGLPLNRPN-DGVVDPDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred ccceeec-CCCeEEEEcc-c-cEEEeccCCceeEEeccccCCCCcCCCC-ceeEcCCCCEEEeCCCccccCccccCCcce
Confidence 5566666 5666665433 3 56666555555 44432 235788 9999999999999987 2 2
Q ss_pred eEEEcCCC-eEEecCC-CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC--CCeE----EEee
Q 018705 116 LLKVTEEG-VEAIVPD-ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET----TVLH 186 (351)
Q Consensus 116 l~~~~~~g-~~~l~~~-~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~----~~~~ 186 (351)
+|++++.| .+.+... ...+|+|+++||| .+|++|+. .+++++|+-+ ++.+ ..+.
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-----------------~~~i~r~~~d~~~g~~~~~~~~~~ 207 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-----------------ANRIHRYDLDPATGPIGGRRGFVD 207 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC-----------------CCeEEEEecCcccCccCCcceEEE
Confidence 89999866 5544444 6899999999999 79999986 3578887543 1211 1121
Q ss_pred c--CccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCC-CCCCceEECC-C-CCEEEEEec
Q 018705 187 E--GFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLP-GGPDNINLAP-D-GSFWIGLIK 251 (351)
Q Consensus 187 ~--~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~-g~pd~i~~d~-~-G~lwva~~~ 251 (351)
. .-..|+|++++.+|+ +|++...+ ++..-.+. |+....+ .+| ..|.+.++-. + ..|||+...
T Consensus 208 ~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i-~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 208 FDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEI-KLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEE-ECCCCCCccceEeCCCcCEEEEEecC
Confidence 1 235799999999998 88654443 44444343 3332222 345 5678888743 3 359999765
No 16
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.17 E-value=1.9e-07 Score=84.73 Aligned_cols=236 Identities=12% Similarity=0.068 Sum_probs=141.1
Q ss_pred CCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eE
Q 018705 52 NHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VE 125 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~ 125 (351)
..|.+++++++++.+|+. ..++.|..+|..+++..........+. .++++++|+ +|++....+ +..++. ++ +.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 457889999777778764 567889999987776644323334567 889999986 666654434 444553 33 33
Q ss_pred EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705 126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly 205 (351)
.+... ..+.+++++++|.++++.... ...+..||..+++..........|.+++++++++.+|
T Consensus 110 ~~~~~-~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 110 EIPVG-VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW 172 (300)
T ss_pred EeeCC-CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence 33322 457899999999876655420 1245667877665533222234678899999999887
Q ss_pred EEec-ceeEEeecCCCCce-eEEeccC------CCCCCceEECCCCCE-EEEEecCCchhhhhhhcChhHHHHHHhccch
Q 018705 206 VCES-WKRYWLKGDRAGIL-DAFIENL------PGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGL 276 (351)
Q Consensus 206 v~~~-~~~~~i~~~~~~~~-~~~~~~~------~g~pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
++.. .+.+.+-+...++. ..+.... ...|.+++++++|+. |++...
T Consensus 173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~------------------------- 227 (300)
T TIGR03866 173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP------------------------- 227 (300)
T ss_pred EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-------------------------
Confidence 7653 33222212111221 1111011 113557889999974 666432
Q ss_pred hhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE--ECCEEEEEecCCCeEEEEeCCCCCC
Q 018705 277 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILPLDGPEP 346 (351)
Q Consensus 277 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~~~~~~~ 346 (351)
...+..+|.++++.+..+... + .+..+.. .+..||+++...+.|.++++.+.+.
T Consensus 228 -----------~~~i~v~d~~~~~~~~~~~~~-~----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 228 -----------ANRVAVVDAKTYEVLDYLLVG-Q----RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred -----------CCeEEEEECCCCcEEEEEEeC-C----CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 124677787566666554321 1 2334443 4557888766678899999887654
No 17
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.16 E-value=2.5e-07 Score=83.94 Aligned_cols=163 Identities=13% Similarity=0.209 Sum_probs=100.3
Q ss_pred eEE-EEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eEEecCCCCCcccEE
Q 018705 65 ALY-TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VEAIVPDASFTNDVI 138 (351)
Q Consensus 65 ~ly-v~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~~l~~~~~~~n~l~ 138 (351)
.+| ++..++.|.++|..+++..........+. +++++++|+ +|++....+ ++.++. ++ ...+... ..+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEE
Confidence 344 45568899999987776543333345577 999999996 667655444 445553 45 3333322 3467789
Q ss_pred EccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEe
Q 018705 139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWL 215 (351)
Q Consensus 139 ~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i 215 (351)
++++|+ +|++... .+.+..||..+++..........+.+++++|+|+.++++.... .+++
T Consensus 80 ~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 80 LHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred ECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 999986 6666543 3579999987665433233334578999999999777766543 3343
Q ss_pred ecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705 216 KGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG 248 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 248 (351)
+.. .++..... .....|..+.++++|. +|++
T Consensus 143 d~~-~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 143 DTK-TYEIVDNV-LVDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred eCC-CCeEEEEE-EcCCCccEEEECCCCCEEEEE
Confidence 322 22221111 1123467788999997 4454
No 18
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.14 E-value=1.9e-09 Score=101.92 Aligned_cols=228 Identities=16% Similarity=0.164 Sum_probs=138.8
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC--ccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecC
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP 129 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~--~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~ 129 (351)
-..+.+| ..|.+|+++.+| ++++|..+++.-....... ..+ .+..|..|+|||++. +|++..++.| ..-...
T Consensus 167 V~aLv~D-~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~sn~~~ 242 (671)
T COG3292 167 VVALVFD-ANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRASNWGP 242 (671)
T ss_pred ceeeeee-ccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhccccccCC
Confidence 4578898 789999999998 9999998887654433222 245 788899999999984 6899988766 332222
Q ss_pred CC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee----cCccccceEEEcCCCCE
Q 018705 130 DA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----EGFYFANGIALSKNEDF 203 (351)
Q Consensus 130 ~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~ngi~~~~dg~~ 203 (351)
.. ..+..+..|.+|.+||.+.. +++++..+.+.+.... .+....|++..+.||+
T Consensus 243 ~lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs- 302 (671)
T COG3292 243 MLPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS- 302 (671)
T ss_pred CCcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC-
Confidence 21 56777888999999998753 4666654434333221 1234567888999998
Q ss_pred EEEEecceeEEeecCCCCceeEEeccCCCCCCc-eEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705 204 VVVCESWKRYWLKGDRAGILDAFIENLPGGPDN-INLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP 282 (351)
Q Consensus 204 lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~-i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
||+.+..+..++....-.....+. ..+|.... .+..+.+--|.....
T Consensus 303 LWv~t~~giv~~~~a~w~~ma~in-~~dG~v~~~~~~a~~ll~~~v~~~------------------------------- 350 (671)
T COG3292 303 LWVGTYGGIVRYLTADWKRMAVIN-DSDGGVSQYEAVAPALLSWGVRQL------------------------------- 350 (671)
T ss_pred EeeeccCceEEEecchhhheeeee-cCCCchhhhhccCchhcccceeec-------------------------------
Confidence 999887763332211110111111 11111100 111221111222111
Q ss_pred CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCC
Q 018705 283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~ 344 (351)
.+.+.+...++.+|.+..+.+.-.+ .+++.++++ ++.+|+|+. ++++.|++..+.
T Consensus 351 ---ns~g~L~van~stG~~v~sv~q~Rg---~nit~~~~d~~g~lWlgs~-q~GLsrl~n~n~ 406 (671)
T COG3292 351 ---NSIGELMVANGSTGELVRSVHQLRG---MNITTTLEDSRGRLWLGSM-QNGLSRLDNKNE 406 (671)
T ss_pred ---cccceEEEecCCCCcEEEEeeeccc---cccchhhhccCCcEEEEec-ccchhhhccCCc
Confidence 1223455566668888877654333 256666644 689999998 678999987763
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.12 E-value=2.6e-07 Score=86.61 Aligned_cols=226 Identities=20% Similarity=0.268 Sum_probs=135.2
Q ss_pred eEEEEEcC----CEEEEEE--cCCCeEEEEe--ecCCccccceEEcCCC-CEEEEeCC---C-Ce--EEEcCC-C-eEEe
Q 018705 65 ALYTATRD----GWVKYFI--LHNETLVNWK--HIDSQSLLGLTTTKDG-GVILCDNE---K-GL--LKVTEE-G-VEAI 127 (351)
Q Consensus 65 ~lyv~~~~----g~I~~~d--~~~g~~~~~~--~~~~~p~~gl~~d~~G-~L~v~d~~---~-gl--~~~~~~-g-~~~l 127 (351)
.+|+|+.. +.|+.+. .++++++... ....+|. -|++++++ .||+++.. . ++ ++++++ | ++.+
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps-~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPS-WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSEC-CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCc-eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 36787765 5676664 4778775443 3557788 99999887 58888763 2 34 444455 6 5554
Q ss_pred cC---CCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEee--------------cC
Q 018705 128 VP---DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLH--------------EG 188 (351)
Q Consensus 128 ~~---~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~--------------~~ 188 (351)
.. ....|-.++++++|+ +|+++.. .|.+..|+.+. |.+.... ..
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 32 226788899999985 7777643 35555554332 4443321 12
Q ss_pred ccccceEEEcCCCCEEEEEecce-e---EEeecCCCCcee---EEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhh
Q 018705 189 FYFANGIALSKNEDFVVVCESWK-R---YWLKGDRAGILD---AFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAI 260 (351)
Q Consensus 189 ~~~~ngi~~~~dg~~lyv~~~~~-~---~~i~~~~~~~~~---~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~ 260 (351)
..+|..+.++|||+++|+++.+. + |.++.. .+..+ .+.-.....|+.++++++|+ +||.....
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~-~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-------- 213 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD-TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-------- 213 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT-S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT--------
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCC-CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC--------
Confidence 35688999999999999999877 4 444332 22221 11112223588999999986 88876432
Q ss_pred hcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeE--EEEEEC-CCCCcc-cceeEEEEE--CCEEEEEecCCC
Q 018705 261 QKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFND-PDATYI-SFVTSAAEF--DGNLYLASLQSN 334 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~-~~g~~~-~~~~~~~~~--~g~L~ig~~~~~ 334 (351)
..-.++.+++++|+. +..+.. +.+... .....+... +..||+++...+
T Consensus 214 --------------------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 214 --------------------------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp --------------------------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred --------------------------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 123466677436643 233332 222111 245555554 568999999999
Q ss_pred eEEEEeCCC
Q 018705 335 FIGILPLDG 343 (351)
Q Consensus 335 ~i~~~~~~~ 343 (351)
.|..|++..
T Consensus 268 sI~vf~~d~ 276 (345)
T PF10282_consen 268 SISVFDLDP 276 (345)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEEec
Confidence 999999854
No 20
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.11 E-value=2.4e-08 Score=90.78 Aligned_cols=178 Identities=18% Similarity=0.218 Sum_probs=111.2
Q ss_pred cccceEEcCCCCEEEEeCCC-------------CeEEEc-CCC--eEEec--CC----CCCcccEEEccC------CcEE
Q 018705 95 SLLGLTTTKDGGVILCDNEK-------------GLLKVT-EEG--VEAIV--PD----ASFTNDVIAASD------GTLY 146 (351)
Q Consensus 95 p~~gl~~d~~G~L~v~d~~~-------------gl~~~~-~~g--~~~l~--~~----~~~~n~l~~d~d------G~ly 146 (351)
++ ++.+|+.|+|||.|.+. .|+.++ .++ ++++. .. ..+.+++++|.. +.+|
T Consensus 3 V~-~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQ-RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EE-EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cc-EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 34 88999999999998662 477777 344 45442 21 178999999972 5799
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--------------------cccceEEEcC---CCCE
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------------------YFANGIALSK---NEDF 203 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--------------------~~~ngi~~~~---dg~~ 203 (351)
+||.+ .++|..||..+++..++.... ....||++++ |+++
T Consensus 82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~ 144 (287)
T PF03022_consen 82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW 144 (287)
T ss_dssp EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence 99986 346777777776665543221 1245788876 8889
Q ss_pred EEEEecce--eEEeec-----CCCC-------ceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHH
Q 018705 204 VVVCESWK--RYWLKG-----DRAG-------ILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL 269 (351)
Q Consensus 204 lyv~~~~~--~~~i~~-----~~~~-------~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~ 269 (351)
||++...+ .|.+.. .... .++.+. ..++..+|+++|++|+||.+....
T Consensus 145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~----------------- 206 (287)
T PF03022_consen 145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ----------------- 206 (287)
T ss_dssp EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC-----------------
T ss_pred EEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC-----------------
Confidence 99988665 566652 1111 122222 223456899999999999997542
Q ss_pred HHhccchhhcccCCCCCCceEEEEEECCCC-----eEEEEEECCCCCcccceeEEEEEC---CEEEEEe
Q 018705 270 LDAYPGLISLLLPMGSDAGARVVKVDGNDG-----KIIRDFNDPDATYISFVTSAAEFD---GNLYLAS 330 (351)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g-----~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~ 330 (351)
..|.++++ ++ +....+++++. ..++.++...+ |.||+-+
T Consensus 207 -------------------~aI~~w~~-~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 207 -------------------NAIGCWDP-DGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -------------------TEEEEEET-TTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE
T ss_pred -------------------CeEEEEeC-CCCcCccchheeEEcCce--eeccceeeeccccCceEEEEE
Confidence 47999999 77 44344566553 34677777655 9999987
No 21
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.08 E-value=1e-07 Score=88.79 Aligned_cols=180 Identities=11% Similarity=0.118 Sum_probs=108.5
Q ss_pred CCCceEEEeeCCCeEEEEEc-CCEEEEEEcC-CCeEE-EEe--ecCCccccceEEcCCC-CEEEEeCCCCeEEEc---CC
Q 018705 52 NHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLV-NWK--HIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT---EE 122 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~-~g~~~-~~~--~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~---~~ 122 (351)
..|..++++++++.+|++.. ++.|..++.+ ++... ... .....|+ +++++++| .+|+++...+.+.+. .+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 36899999988888998764 7788888764 23221 111 1224578 99999998 477888775544443 23
Q ss_pred C-eEE-----ec-CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEE--eCCCCeEEEeec-----
Q 018705 123 G-VEA-----IV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY--DPKLKETTVLHE----- 187 (351)
Q Consensus 123 g-~~~-----l~-~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~~~~~~~~~~----- 187 (351)
| +.. .. .....|+++++++||+ +|+++.. .+.|..| +..+++.+.+..
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 4 321 11 1116799999999985 7777653 3455554 433444433221
Q ss_pred ----CccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEec-cCCCCCCceEECCCCC-EEEEEe
Q 018705 188 ----GFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS-FWIGLI 250 (351)
Q Consensus 188 ----~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~-lwva~~ 250 (351)
+...+.+|+++||++++|+++... .+.+.. ..+..+.... .....|.++.++++|+ ||++..
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~-~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE-DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC-CCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 112344699999999999986543 333432 1122221111 1123588999999996 777653
No 22
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.95 E-value=5.3e-08 Score=92.03 Aligned_cols=137 Identities=14% Similarity=0.196 Sum_probs=93.3
Q ss_pred CCccccceEEcCCCCEEEEeCC-------------CCeEEEcC---CC----eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 92 DSQSLLGLTTTKDGGVILCDNE-------------KGLLKVTE---EG----VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 92 ~~~p~~gl~~d~~G~L~v~d~~-------------~gl~~~~~---~g----~~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
-..|. +|++|++|+|||++.. ..++++.. +| .+++++....|+++++.++| +|+++..
T Consensus 13 ~~~P~-~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~ 90 (367)
T TIGR02604 13 LRNPI-AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPP 90 (367)
T ss_pred cCCCc-eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCC
Confidence 36788 9999999999999741 14666653 45 25667777889999999999 9998753
Q ss_pred CccCCcccccccccccCCceEEEE-eCCC-----CeEEEeecCc--------cccceEEEcCCCCEEEEEecce------
Q 018705 152 TKYTPTDFYKDMAEGKPYGQLRKY-DPKL-----KETTVLHEGF--------YFANGIALSKNEDFVVVCESWK------ 211 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~g~l~~~-d~~~-----~~~~~~~~~~--------~~~ngi~~~~dg~~lyv~~~~~------ 211 (351)
.|++| +.+. ++.+.+..++ ..++++++.+||. ||++....
T Consensus 91 -------------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 91 -------------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVT 150 (367)
T ss_pred -------------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceec
Confidence 57766 3221 1334444332 3488999999997 99966521
Q ss_pred --------------eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 212 --------------RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 212 --------------~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.++.-++..++.++++..+ ..|.|+++|++|++|++...
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence 1111123334566666543 25789999999999998763
No 23
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.2e-06 Score=81.39 Aligned_cols=239 Identities=15% Similarity=0.162 Sum_probs=149.2
Q ss_pred CCCceEEEeeCCCeEEEEEcCC-EEEEEEcCCCeEEEEeecC-CccccceEEcCCCC-EEEEeCCC-CeEEEc-C-CC-e
Q 018705 52 NHPEDVSVVVSKGALYTATRDG-WVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNEK-GLLKVT-E-EG-V 124 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g-~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~-L~v~d~~~-gl~~~~-~-~g-~ 124 (351)
..|.+++.++++..+|+..... .+..++........+...+ ..|. ++++++.|. +|+.+... .+..++ . .. .
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 3799999997777888876533 4666665433333433334 6788 999998885 99988663 455555 2 22 3
Q ss_pred EEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705 125 EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (351)
Q Consensus 125 ~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ 203 (351)
+..... ..|.+++++++| .+|+++... ..+.+..+|..++.+.........|.|++++|+|+.
T Consensus 110 ~~~~vG-~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~ 173 (381)
T COG3391 110 GSIPVG-LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNK 173 (381)
T ss_pred eEeeec-cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCe
Confidence 332222 489999999998 899999741 146899999988877655444457899999999999
Q ss_pred EEEEecce-eEEeecCCCCcee-EE---eccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchh
Q 018705 204 VVVCESWK-RYWLKGDRAGILD-AF---IENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI 277 (351)
Q Consensus 204 lyv~~~~~-~~~i~~~~~~~~~-~~---~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (351)
+|+++... ++.+-+....... .. .......|.++.++++|+ +|++....
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~------------------------- 228 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS------------------------- 228 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC-------------------------
Confidence 99998544 4443322111111 00 012234688999999997 89987542
Q ss_pred hcccCCCCCCceEEEEEECCCCeEEEE-EECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705 278 SLLLPMGSDAGARVVKVDGNDGKIIRD-FNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 343 (351)
Q Consensus 278 ~~~~~~~~~~~~~v~~~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~ 343 (351)
....+.++|..+++.... +....+ ......+...+...|+.....+.+..++.+.
T Consensus 229 ---------~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 229 ---------GSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred ---------CCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 123577777744554443 222111 1111222345566777766566677666554
No 24
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.93 E-value=2.9e-08 Score=94.08 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=106.3
Q ss_pred EEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe--ecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CCeEE-ecC--
Q 018705 57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWK--HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EGVEA-IVP-- 129 (351)
Q Consensus 57 i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~--~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g~~~-l~~-- 129 (351)
++.| ..+.+|||+.+| +++.++.+-++..+. .+.++.. -+.-|++|.+|+++. +|+.++. + .++.. ..+
T Consensus 211 l~~d-~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~-ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~~~~~ 286 (671)
T COG3292 211 LIAD-VQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL-LLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPLSKMH 286 (671)
T ss_pred HHHH-hcCcEEEEeccc-eEEEchhhccccccCCCCcchhee-eeecccCCCEEEeec-ccceeEecCCCCccccccccC
Confidence 4445 578899999888 888887543332221 1234455 677889999999985 4677666 4 44322 211
Q ss_pred -CCCCcccEEEccCCcEEEEeCCCc--cCCcccc------------------------cccccccCCceEEEEeCCCCeE
Q 018705 130 -DASFTNDVIAASDGTLYFTVASTK--YTPTDFY------------------------KDMAEGKPYGQLRKYDPKLKET 182 (351)
Q Consensus 130 -~~~~~n~l~~d~dG~ly~t~~~~~--~~~~~~~------------------------~~~~~~~~~g~l~~~d~~~~~~ 182 (351)
....+|++..|.+|.+|+++.... |...+|. ..++.....|.+...++++|..
T Consensus 287 l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~ 366 (671)
T COG3292 287 LGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGEL 366 (671)
T ss_pred CccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcE
Confidence 227789999999999999886532 2211111 0122223334456667776664
Q ss_pred EEeecCc--cccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCC-CCceEECCCCCEEEEEec
Q 018705 183 TVLHEGF--YFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGG-PDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 183 ~~~~~~~--~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~-pd~i~~d~~G~lwva~~~ 251 (351)
-...... ....-.+++.+|. +|+.+..+ |+.-. ..+..--...+++.. ..-+..|++++||+++..
T Consensus 367 v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~--n~~avlde~agl~ss~V~aived~dnsLWIGTs~ 438 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNK--NEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSG 438 (671)
T ss_pred EEEeeeccccccchhhhccCCc-EEEEecccchhhhccC--CcccccccccCCcccceeeeeecCCCCEEEeccC
Confidence 3322222 2222345666665 99988774 44322 111111111122211 233667999999999754
No 25
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.8e-06 Score=77.83 Aligned_cols=196 Identities=19% Similarity=0.248 Sum_probs=119.4
Q ss_pred cCccCceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcC-CCeEE----EEeecCC---------ccccceEEc
Q 018705 38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLV----NWKHIDS---------QSLLGLTTT 102 (351)
Q Consensus 38 ~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~-~g~~~----~~~~~~~---------~p~~gl~~d 102 (351)
.+|+-+-..... ...|..+++|+++..+|++.. .|.|.++-.+ +|.+. ...+.+. .++ ...++
T Consensus 76 G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~t 153 (346)
T COG2706 76 GRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFT 153 (346)
T ss_pred CeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeC
Confidence 456555444333 356789999976678898875 4555444332 35432 2222221 255 67788
Q ss_pred CCCC-EEEEeCCC-CeEEEc-CCC-eEEec----CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEE
Q 018705 103 KDGG-VILCDNEK-GLLKVT-EEG-VEAIV----PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLR 173 (351)
Q Consensus 103 ~~G~-L~v~d~~~-gl~~~~-~~g-~~~l~----~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~ 173 (351)
++|+ |+++|-+. .++.++ .+| .+... .....|..|++.|+|. .|+.+.- ...=.++
T Consensus 154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~ 218 (346)
T COG2706 154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVL 218 (346)
T ss_pred CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEE
Confidence 9995 67777664 444444 366 33221 1127899999999996 5765532 1112477
Q ss_pred EEeCCCCeEEEee------cCccccc---eEEEcCCCCEEEEEecce-eE---EeecCCCCceeEEec-cCCC-CCCceE
Q 018705 174 KYDPKLKETTVLH------EGFYFAN---GIALSKNEDFVVVCESWK-RY---WLKGDRAGILDAFIE-NLPG-GPDNIN 238 (351)
Q Consensus 174 ~~d~~~~~~~~~~------~~~~~~n---gi~~~~dg~~lyv~~~~~-~~---~i~~~~~~~~~~~~~-~~~g-~pd~i~ 238 (351)
.||+..++++.+. +++...+ -|.+++||++||+++.+. .+ .+. +..+..+.+.. ...| .|+.+.
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~-~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD-PDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc-CCCCEEEEEEEeccCCcCCccce
Confidence 8888777776653 2233333 488999999999998766 34 343 33444443321 2334 499999
Q ss_pred ECCCCCEEEEEec
Q 018705 239 LAPDGSFWIGLIK 251 (351)
Q Consensus 239 ~d~~G~lwva~~~ 251 (351)
+++.|++.++...
T Consensus 298 i~~~g~~Liaa~q 310 (346)
T COG2706 298 INPSGRFLIAANQ 310 (346)
T ss_pred eCCCCCEEEEEcc
Confidence 9999997777654
No 26
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.87 E-value=9e-07 Score=82.41 Aligned_cols=153 Identities=19% Similarity=0.281 Sum_probs=95.1
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEee-------cCCccccceEEcCC----CCEEEEeCC------
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKH-------IDSQSLLGLTTTKD----GGVILCDNE------ 113 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~-------~~~~p~~gl~~d~~----G~L~v~d~~------ 113 (351)
..|.+|++.| +|.+||+...|+|++++. ++.. ..+.. ...-.. |++++++ +.||++-..
T Consensus 2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFLP-DGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEET-TSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEeC-CCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCC
Confidence 5699999995 589999999999999994 5554 22221 112356 9999984 889997652
Q ss_pred ---CCeEEEc--CC-C----eEEe----cC---CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEe
Q 018705 114 ---KGLLKVT--EE-G----VEAI----VP---DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176 (351)
Q Consensus 114 ---~gl~~~~--~~-g----~~~l----~~---~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d 176 (351)
..++++. .. . .+.+ .. ....-..|+++|||.||++.....- .....+ .....|.|+|++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~ 154 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRID 154 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEec
Confidence 1455554 22 1 1222 11 1145566999999999999864211 011111 122367899999
Q ss_pred CCCC-------------eEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 177 PKLK-------------ETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 177 ~~~~-------------~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
+++. ..++++.++.+|.++++++....||++|.+.
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 8643 3466788899999999999933599998654
No 27
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.85 E-value=1.5e-06 Score=88.99 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=112.4
Q ss_pred CCceEEEeeCCCeEEEEEc-CCEEEEEEcCCC-----eEEEEe----------ecC-----------CccccceEEcCCC
Q 018705 53 HPEDVSVVVSKGALYTATR-DGWVKYFILHNE-----TLVNWK----------HID-----------SQSLLGLTTTKDG 105 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g-----~~~~~~----------~~~-----------~~p~~gl~~d~~G 105 (351)
..--+|++|-+|.||++.. ..+|+|+..-.+ .++... ..| ..|- ||++|++|
T Consensus 408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g 486 (1899)
T KOG4659|consen 408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMG 486 (1899)
T ss_pred ceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCC
Confidence 3447899999999999765 567998853222 122221 112 2588 99999999
Q ss_pred CEEEEeCCCCeEEEcCCC-eEEecCC--------------------CCCcccEEEcc-CCcEEEEeCCCccCCccccccc
Q 018705 106 GVILCDNEKGLLKVTEEG-VEAIVPD--------------------ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDM 163 (351)
Q Consensus 106 ~L~v~d~~~gl~~~~~~g-~~~l~~~--------------------~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~ 163 (351)
.||++|. ..|..++.+| ++++... ..+|.+++++| |+.+|+-|..
T Consensus 487 ~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------------ 553 (1899)
T KOG4659|consen 487 NLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------------ 553 (1899)
T ss_pred cEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc------------
Confidence 9999995 4677788888 6665321 06999999999 7899998754
Q ss_pred ccccCCceEEEEeCCCCeEEEee---------------------cCccccceEEEcCCCCEEEEEecce----eEEeecC
Q 018705 164 AEGKPYGQLRKYDPKLKETTVLH---------------------EGFYFANGIALSKNEDFVVVCESWK----RYWLKGD 218 (351)
Q Consensus 164 ~~~~~~g~l~~~d~~~~~~~~~~---------------------~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~ 218 (351)
-|+++++. ++++... ..+..+..|+++++|. |||+|++. |+..-+
T Consensus 554 -------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~- 623 (1899)
T KOG4659|consen 554 -------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS- 623 (1899)
T ss_pred -------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec-
Confidence 34444443 3333221 1133466899999996 99999987 332211
Q ss_pred CCCceeEEec-------------------------cCCCCCCceEECCCCCEEEEEec
Q 018705 219 RAGILDAFIE-------------------------NLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 219 ~~~~~~~~~~-------------------------~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
+.|+.-+++. ..-..|..+++.++|.++||...
T Consensus 624 tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 624 TDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred cCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence 1112111111 00113666899999999999754
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.82 E-value=1.4e-05 Score=70.54 Aligned_cols=176 Identities=17% Similarity=0.255 Sum_probs=104.6
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC--eEEe
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAI 127 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g--~~~l 127 (351)
.-.++.++++++.++++..+|.|..|+..+++... ......... .+.+.++++ ++++...+.+..++. ++ ...+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 34688999777888888889999999986664322 222223334 778888885 444444434444443 33 4444
Q ss_pred cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEE
Q 018705 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv 206 (351)
......+.++.+.+++.++++... .+.+..||..+++...... .......+++++++..++.
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 433346788899998877776653 4679999887555433332 2335678999999876655
Q ss_pred Eecce--eEE-eecCCCCceeEEeccCCCCCCceEECCCCC-EEEEE
Q 018705 207 CESWK--RYW-LKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGL 249 (351)
Q Consensus 207 ~~~~~--~~~-i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~ 249 (351)
+...+ ++| +... .....+. ...+....+.++++|+ ++++.
T Consensus 153 ~~~~~~i~i~d~~~~--~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 153 SSQDGTIKLWDLRTG--KCVATLT-GHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred EcCCCcEEEEEcccc--ccceeEe-cCccccceEEECCCcCEEEEec
Confidence 55344 333 2211 1112222 1222356678888885 55543
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.81 E-value=1.2e-05 Score=71.10 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=133.4
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEcC-CC--eEEecC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--VEAIVP 129 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~~-~g--~~~l~~ 129 (351)
..+.+.+.+..++++..+|.|..++..+++. ..+......+. .+.++++++++++....+ +..++. ++ ...+..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 3788886666888888899999999866433 33333334566 889998888887776344 444443 34 444433
Q ss_pred CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCCCCEEEEEe
Q 018705 130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~dg~~lyv~~ 208 (351)
....+.++++++++.++++... .+.+..||..+++.... .........++++++++.++++.
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence 3356888999998877666542 35788888765544332 22223567899999998787777
Q ss_pred cceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705 209 SWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA 287 (351)
Q Consensus 209 ~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
..+.+.+-+...++. ..+. ........+.+++++.++++...
T Consensus 197 ~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~------------------------------------ 239 (289)
T cd00200 197 SDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSE------------------------------------ 239 (289)
T ss_pred CCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcC------------------------------------
Confidence 655222222111221 1111 12223456788888877776542
Q ss_pred ceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC--CEEEEEecCCCeEEE
Q 018705 288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD--GNLYLASLQSNFIGI 338 (351)
Q Consensus 288 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~--g~L~ig~~~~~~i~~ 338 (351)
.+.+..++..+++....+..+.. .+..+.... ..|+.++. .+.+..
T Consensus 240 ~~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~-d~~i~i 287 (289)
T cd00200 240 DGTIRVWDLRTGECVQTLSGHTN----SVTSLAWSPDGKRLASGSA-DGTIRI 287 (289)
T ss_pred CCcEEEEEcCCceeEEEccccCC----cEEEEEECCCCCEEEEecC-CCeEEe
Confidence 13466777634676666653322 456665543 34554443 444443
No 30
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.7e-06 Score=82.16 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=122.8
Q ss_pred CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCC---CCeEEEcC-CC--
Q 018705 52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNE---KGLLKVTE-EG-- 123 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~---~gl~~~~~-~g-- 123 (351)
..|.++++++.+..+|+... .+.|..+|..+.+.......+..|. +++++++| .+||++.. ..+..++. ++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 67899999977788999775 4789999965666655555666899 99999988 89999984 34556665 33
Q ss_pred eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-----eecCccccceEEE
Q 018705 124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-----LHEGFYFANGIAL 197 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-----~~~~~~~~ngi~~ 197 (351)
.+....+ ..|.+++++++|. +|+++.. .+.|..+|.++..+.. ....+..|.++++
T Consensus 153 ~~~~~vG-~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 153 TATIPVG-NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred EEEEecC-CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 2222222 4689999999996 9999954 4689999977655543 1334578999999
Q ss_pred cCCCCEEEEEecce---eEEeecCCCCceeE--EeccCCCCCCceEECCCCC-EEEEE
Q 018705 198 SKNEDFVVVCESWK---RYWLKGDRAGILDA--FIENLPGGPDNINLAPDGS-FWIGL 249 (351)
Q Consensus 198 ~~dg~~lyv~~~~~---~~~i~~~~~~~~~~--~~~~~~g~pd~i~~d~~G~-lwva~ 249 (351)
+++|+.+|+++..+ .....+...+.... ...... .|.++..+++|. +|++.
T Consensus 215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEe
Confidence 99999999988764 32222211222111 111222 578899999996 56653
No 31
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.78 E-value=7.4e-08 Score=88.09 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=104.3
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCc----cccceEEcCCCCEEEEeCC------------
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQ----SLLGLTTTKDGGVILCDNE------------ 113 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~----p~~gl~~d~~G~L~v~d~~------------ 113 (351)
...|-+|+++.++|.|||+.+--+++.+++.+++.+.... ..+. .+ ++.++++|.+|++|+.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred cCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEEee
Confidence 4679999999777899999887779999997776544322 2232 35 8889999999998854
Q ss_pred ------CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEe---CCCCe
Q 018705 114 ------KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD---PKLKE 181 (351)
Q Consensus 114 ------~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d---~~~~~ 181 (351)
++++++|+ +. .+++.++..+||++++++|+. +.++.+. ..++.+|- ++-|+
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g~k~gt 255 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKGPKAGT 255 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecCCccCc
Confidence 25777776 44 667777779999999999996 4555543 23566663 44455
Q ss_pred EEEeecCc-cccceEEEcCCCCEEEEEecce
Q 018705 182 TTVLHEGF-YFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 182 ~~~~~~~~-~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
.+.+++++ .+|+-|..+++|+ .||+-...
T Consensus 256 ~EvFa~~LPG~PDNIR~~~~G~-fWVal~~~ 285 (376)
T KOG1520|consen 256 SEVFAEGLPGYPDNIRRDSTGH-FWVALHSK 285 (376)
T ss_pred hhhHhhcCCCCCcceeECCCCC-EEEEEecc
Confidence 57777754 5899999999998 88876443
No 32
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=6.2e-06 Score=80.07 Aligned_cols=176 Identities=11% Similarity=0.056 Sum_probs=105.4
Q ss_pred ceEEEeeCCCeE-EEEEcCC--EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-eE
Q 018705 55 EDVSVVVSKGAL-YTATRDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE 125 (351)
Q Consensus 55 e~i~~d~~~g~l-yv~~~~g--~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~~ 125 (351)
.+..|+|++..+ |+...++ .|+.+|..+|+.+.+....+... ..++++||+ |+++.... .++.++. ++ .+
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT 299 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence 367898777655 5554443 69999987887665544333334 678899996 65543222 4888875 55 66
Q ss_pred EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l 204 (351)
.+..........++++||. |+++... .....||++|.++++.+.+........+.+++|||+.+
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEE
Confidence 5544333455678899985 6665432 01236999998888876654333333457899999988
Q ss_pred EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705 205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG 248 (351)
Q Consensus 205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 248 (351)
+++.... ++++-+...+..+.+... .......++++|+ |+.+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYS 410 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEE
Confidence 8865433 444433333444333321 1122346788886 4443
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.77 E-value=8.8e-06 Score=79.61 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=131.3
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eE
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VE 125 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~ 125 (351)
...-.+++..|++..+-+|..||+|-.||...| -+.+|........ ++.+...|+..++..-.|.+|.+. .. .+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 445568899988888889999999999998655 3566766656666 999999999999888888888773 33 56
Q ss_pred EecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccc-cceEEEcCCCCE
Q 018705 126 AIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF-ANGIALSKNEDF 203 (351)
Q Consensus 126 ~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~-~ngi~~~~dg~~ 203 (351)
++..+. ...+.+++||.|-+-++-+-.. =.|+.|+.+||+..-+..+-.. ..|++++++++.
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~----------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDS----------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccce----------------EEEEEEEeecCeeeehhcCCCCcceeeEEccccCe
Confidence 665443 5678899999998777654311 2689999999987665555444 468999999996
Q ss_pred EEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhh
Q 018705 204 VVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGV 257 (351)
Q Consensus 204 lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~ 257 (351)
|+-++.++ |+|-.=...++.|.+.- ..-.-++.+.++|. |=|++..+....+
T Consensus 493 LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred EEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 66666666 77743123345554431 11234567888885 8888766544433
No 34
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.77 E-value=3e-07 Score=90.34 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=118.7
Q ss_pred CCCceEEEeeCCCe-EEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCC-CEEEEeCCCCeEEEcC-CC--eE
Q 018705 52 NHPEDVSVVVSKGA-LYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-EG--VE 125 (351)
Q Consensus 52 ~~pe~i~~d~~~g~-lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-~g--~~ 125 (351)
.-+.+|.+|-.+.. +|++.....|.+-....++-+.+. ..-..|- ||++|.-+ ++|.+|+...-+.+-. +| .+
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence 45778899966654 577777777888877666665554 3446799 99999766 7999987654444443 66 33
Q ss_pred E-ecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCCCC
Q 018705 126 A-IVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNED 202 (351)
Q Consensus 126 ~-l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~dg~ 202 (351)
+ +...+..|.+|++|+ .|+||+||+... +-.|-+-++++...+++ -+.+..|||+.|+|..+
T Consensus 1104 vLf~tdLVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~ 1168 (1289)
T KOG1214|consen 1104 VLFYTDLVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSK 1168 (1289)
T ss_pred EEEeecccCcceEEeecccCceeecccccc---------------CCcceeeccCCccceEEeecccCCCCCceeCcccc
Confidence 3 445567899999999 679999998621 22344444443333333 46688999999999999
Q ss_pred EEEEEecce-eEEeec-CCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705 203 FVVVCESWK-RYWLKG-DRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 203 ~lyv~~~~~-~~~i~~-~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
.|-+.+.++ |+.-.. ...++..++. ++ .+|-++.-+.+. +|-+..
T Consensus 1169 ~LCWvDAGt~rleC~~p~g~gRR~i~~-~L-qYPF~itsy~~~-fY~TDW 1215 (1289)
T KOG1214|consen 1169 LLCWVDAGTKRLECTLPDGTGRRVIQN-NL-QYPFSITSYADH-FYHTDW 1215 (1289)
T ss_pred eeeEEecCCcceeEecCCCCcchhhhh-cc-cCceeeeecccc-ceeecc
Confidence 777777776 543322 2234433332 33 378888877766 666643
No 35
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.76 E-value=3.9e-05 Score=71.36 Aligned_cols=244 Identities=15% Similarity=0.099 Sum_probs=134.4
Q ss_pred CCeEEEEEcC-----CEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeC---------CCCeEEE-cC-CC--
Q 018705 63 KGALYTATRD-----GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDN---------EKGLLKV-TE-EG-- 123 (351)
Q Consensus 63 ~g~lyv~~~~-----g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~---------~~gl~~~-~~-~g-- 123 (351)
..++||.... |+|+.+|.+++++..-...+.+|. ++ +++|| .||+|.. ....+.+ +. +.
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 4567775543 889999998888765556778899 86 99998 6999987 4444444 43 44
Q ss_pred eEEecCC-------CCCcccEEEccCC-cEEEEeCC--CccCC-----cccccc--------ccc-c-------cCCceE
Q 018705 124 VEAIVPD-------ASFTNDVIAASDG-TLYFTVAS--TKYTP-----TDFYKD--------MAE-G-------KPYGQL 172 (351)
Q Consensus 124 ~~~l~~~-------~~~~n~l~~d~dG-~ly~t~~~--~~~~~-----~~~~~~--------~~~-~-------~~~g~l 172 (351)
...+..+ ...++.+++++|| .+|+++.. ..... +....+ ++. . -.+|++
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence 3333321 1467799999999 58887732 11000 010000 110 0 112222
Q ss_pred EEE--eCCCCeEEE----eecC-----ccccceEEEcC-CCCEEEEEecceeEEee--cCCC---CceeEEecc-C--CC
Q 018705 173 RKY--DPKLKETTV----LHEG-----FYFANGIALSK-NEDFVVVCESWKRYWLK--GDRA---GILDAFIEN-L--PG 232 (351)
Q Consensus 173 ~~~--d~~~~~~~~----~~~~-----~~~~ngi~~~~-dg~~lyv~~~~~~~~i~--~~~~---~~~~~~~~~-~--~g 232 (351)
..+ +.+ |+... +... +..| .+++ ||+.+|++..+..+.++ +... ...+.+... . ..
T Consensus 170 ~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 170 AKVGYGTK-GNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred EEEEecCC-CceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccccccc
Confidence 221 211 22111 1001 1233 3455 88888888775533333 2111 111222111 0 12
Q ss_pred CCCc---eEECCCC-CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC
Q 018705 233 GPDN---INLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP 308 (351)
Q Consensus 233 ~pd~---i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 308 (351)
.|.| ++++++| ++||++..+... -+ -.....|..+|.++++++..+...
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~----th-----------------------k~~~~~V~ViD~~t~kvi~~i~vG 298 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKW----TH-----------------------KTASRFLFVVDAKTGKRLRKIELG 298 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccc----cc-----------------------cCCCCEEEEEECCCCeEEEEEeCC
Confidence 3555 8899886 599976532100 00 022246899999888888888642
Q ss_pred CCCcccceeEEE--EECC-EEEEEecCCCeEEEEeCCCC
Q 018705 309 DATYISFVTSAA--EFDG-NLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 309 ~g~~~~~~~~~~--~~~g-~L~ig~~~~~~i~~~~~~~~ 344 (351)
. .+..+. .++. .||..+..++.|.++|..+.
T Consensus 299 ~-----~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 299 H-----EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred C-----ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 2 233444 4556 78988877888999997665
No 36
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.7e-05 Score=76.70 Aligned_cols=174 Identities=11% Similarity=0.064 Sum_probs=103.6
Q ss_pred ceEEEeeCCCeEE-EEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEE-eCC--CCeEEEcC-CC-eE
Q 018705 55 EDVSVVVSKGALY-TATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILC-DNE--KGLLKVTE-EG-VE 125 (351)
Q Consensus 55 e~i~~d~~~g~ly-v~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~-d~~--~gl~~~~~-~g-~~ 125 (351)
.+++|+|++..++ +... ...|++++..+|+.+.+....+... ..+++++|+ |+++ +.. ..++.++. +| .+
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT 285 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE
Confidence 4668887776554 4433 3469999998887766544334444 678999996 5443 322 24888875 55 66
Q ss_pred EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l 204 (351)
.+..........++++||+ |+++... .....||.+|.++++.+.+.........++++|||+.+
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 5544323345678999995 5555321 01236999998777776654333334468999999988
Q ss_pred EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEE
Q 018705 205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW 246 (351)
Q Consensus 205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 246 (351)
+++.... .+++-+...++...+... .......++++|+..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~~Lt~~--~~~~~p~~spdG~~i 393 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVRTLTPG--SLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeEECCCC--CCCCCceECCCCCEE
Confidence 8765332 344433333444433321 122345788999743
No 37
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7.4e-05 Score=66.33 Aligned_cols=236 Identities=13% Similarity=0.110 Sum_probs=137.3
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC-ccccceEEc-CCCCEEEEeC-CC-CeEEEc--CCC-e
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-QSLLGLTTT-KDGGVILCDN-EK-GLLKVT--EEG-V 124 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d-~~G~L~v~d~-~~-gl~~~~--~~g-~ 124 (351)
..++++.++.++..+.+.+.|..+..+|..+|+......... -+. -..|- .+..+.-+.. .. .|..++ .+. +
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 467899999666667777888889999988886644322210 011 22332 3333333322 12 233333 344 7
Q ss_pred EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705 125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (351)
Q Consensus 125 ~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l 204 (351)
+.+......+++|++.|-+..+++.+- +..|..||....+-+.+.. ...+.-+|++|+| |
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~G--L 153 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEG--L 153 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEeccc-----------------CCeEEeeEecCCCCceEEe-cCCCcceeECCCC--c
Confidence 777666678999999998888888765 4468888876444333322 3345568999999 4
Q ss_pred EEEec-ce-e---EEeecCCCCceeEEeccCCC--CCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccch
Q 018705 205 VVCES-WK-R---YWLKGDRAGILDAFIENLPG--GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGL 276 (351)
Q Consensus 205 yv~~~-~~-~---~~i~~~~~~~~~~~~~~~~g--~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
+++-. .. . |.+..-..|..+.|.-..+. --.++.++++|. +.+++..
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------------------------- 208 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------------------------- 208 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-------------------------
Confidence 44333 22 3 44432223444444321111 114688999997 6666543
Q ss_pred hhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEEeCCCCCC
Q 018705 277 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDGPEP 346 (351)
Q Consensus 277 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~~~~~~ 346 (351)
+.+..+|.-+|.+...+....+.. ...-+++. -+++..+++...++|..+++.+..+
T Consensus 209 ------------s~~~~lDAf~G~~~~tfs~~~~~~-~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 209 ------------SFIYLLDAFDGTVKSTFSGYPNAG-NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ------------CcEEEEEccCCcEeeeEeeccCCC-CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 245666666888888776533221 11223333 3567777777778888888765443
No 38
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.66 E-value=7.6e-06 Score=84.10 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=96.6
Q ss_pred CcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee---------cC-----------CccccceEEcC-CCCEE
Q 018705 50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---------ID-----------SQSLLGLTTTK-DGGVI 108 (351)
Q Consensus 50 ~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~---------~~-----------~~p~~gl~~d~-~G~L~ 108 (351)
++..|.+|++| +.|++|..... +|.++|. +|....+.. +| ..|. .+++|| ++.|+
T Consensus 473 ~L~~PkGIa~d-k~g~lYfaD~t-~IR~iD~-~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~ 548 (1899)
T KOG4659|consen 473 QLIFPKGIAFD-KMGNLYFADGT-RIRVIDT-TGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLL 548 (1899)
T ss_pred eeccCCceeEc-cCCcEEEeccc-EEEEecc-CceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEE
Confidence 47789999999 78888876554 4888886 665543311 01 3588 999997 66899
Q ss_pred EEeCCCCeEEEcCCC-eEEecCCC---------------------CCcccEEEccCCcEEEEeCCCc-cCCccccccccc
Q 018705 109 LCDNEKGLLKVTEEG-VEAIVPDA---------------------SFTNDVIAASDGTLYFTVASTK-YTPTDFYKDMAE 165 (351)
Q Consensus 109 v~d~~~gl~~~~~~g-~~~l~~~~---------------------~~~n~l~~d~dG~ly~t~~~~~-~~~~~~~~~~~~ 165 (351)
|-|.. -++++++++ +.++.... ..+.+|++.++|-||++.+..+ .+.-+ .
T Consensus 549 Vld~n-vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr------~ 621 (1899)
T KOG4659|consen 549 VLDTN-VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVR------K 621 (1899)
T ss_pred Eeecc-eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheE------E
Confidence 99854 577777776 55543210 4678999999999999987422 11100 0
Q ss_pred ccCCceEEEEeCCC---------------C-eEEEeecCccccceEEEcCCCCEEEEEecce-eEE
Q 018705 166 GKPYGQLRKYDPKL---------------K-ETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYW 214 (351)
Q Consensus 166 ~~~~g~l~~~d~~~---------------~-~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~ 214 (351)
-..+|.+..+-... + ........+..|..+|++|||+ +|+++.++ |+.
T Consensus 622 ~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 622 LSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSGNSRIR 686 (1899)
T ss_pred eccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCCchhhh
Confidence 01122222221100 0 0000012256788999999998 99999988 554
No 39
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.64 E-value=4.2e-06 Score=80.13 Aligned_cols=165 Identities=14% Similarity=0.167 Sum_probs=106.3
Q ss_pred ceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEe-------e-cCCccccceEEcCC-------CC
Q 018705 43 LTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWK-------H-IDSQSLLGLTTTKD-------GG 106 (351)
Q Consensus 43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~-------~-~~~~p~~gl~~d~~-------G~ 106 (351)
++++..+ +..|.+|++.| +|.+||+.. .|+|++++..++..+... . ..+-++ ||+++++ +.
T Consensus 22 ~~~va~G-L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~ 98 (454)
T TIGR03606 22 KKVLLSG-LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEECC-CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence 5677777 89999999995 678999887 599999987555432221 1 234467 9999865 36
Q ss_pred EEEEe----------CCCCeEEEc--CC-C----eEEecCCC-----CCcccEEEccCCcEEEEeCCCccC------Ccc
Q 018705 107 VILCD----------NEKGLLKVT--EE-G----VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYT------PTD 158 (351)
Q Consensus 107 L~v~d----------~~~gl~~~~--~~-g----~~~l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~------~~~ 158 (351)
||++- ....+.|+. .+ . .+.+.... ..-..|++++||.|||+....... ...
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 88874 123466654 21 1 12222111 344568999999999987643110 000
Q ss_pred ccc------cc---ccccCCceEEEEeCCCC-----------eEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 159 FYK------DM---AEGKPYGQLRKYDPKLK-----------ETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 159 ~~~------~~---~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
... .+ -.....|.|+|+|++.. +.++++.++.+|.|++++|+|. ||++|.+.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp 250 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP 250 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence 000 00 01123678999998742 2357788899999999999876 99999765
No 40
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=3.6e-05 Score=74.55 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=106.7
Q ss_pred CceEEEeeCCCeE-EEEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-e
Q 018705 54 PEDVSVVVSKGAL-YTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-V 124 (351)
Q Consensus 54 pe~i~~d~~~g~l-yv~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~ 124 (351)
-.++.|.|++..| |+... +..|+.+|..+|+.+.+....+... ..++.+||+ |.++... ..++.++. .+ .
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT 282 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence 3467888777655 55543 4579999998887766654444445 788999996 4444322 34888885 55 6
Q ss_pred EEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705 125 EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (351)
Q Consensus 125 ~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ 203 (351)
+.+...........++|||+ |+++... .....||++|.++++.+.+......-....++|||+.
T Consensus 283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEccCCCCccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCE
Confidence 65554333445678999995 6655432 0123699999887777766543333345789999998
Q ss_pred EEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705 204 VVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 245 (351)
Q Consensus 204 lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l 245 (351)
|++..... ++++-+...+..+.+... .......++++|+.
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~ 390 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCE
Confidence 87765432 444433322333333221 12355788899973
No 41
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=5.2e-05 Score=73.27 Aligned_cols=174 Identities=10% Similarity=0.130 Sum_probs=101.5
Q ss_pred eEEEeeCCCeEE-EEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEE
Q 018705 56 DVSVVVSKGALY-TATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEA 126 (351)
Q Consensus 56 ~i~~d~~~g~ly-v~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~ 126 (351)
+++|+|++..++ +...+ ..|+.+|..+|+.+.+....+... ..++.+||+ |+++... ..++.++. .+ .+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence 678888776664 44333 359999998887766554444445 788999995 5444322 24777775 44 555
Q ss_pred ecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705 127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly 205 (351)
+...........+++||+ |+++... ...-.||.++.++++.+.+..........+++|||+.++
T Consensus 279 lt~~~~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 279 LTQSSGIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCCCCCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 544323345578999995 6655321 012368888877666655543222233468999999877
Q ss_pred EEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 018705 206 VCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247 (351)
Q Consensus 206 v~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 247 (351)
++...+ .+.+-+...++...+... .......++++|+..+
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYIL 386 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEE
Confidence 654332 333333223343333321 1234568888997433
No 42
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=6.7e-05 Score=72.50 Aligned_cols=177 Identities=13% Similarity=0.078 Sum_probs=106.8
Q ss_pred ceEEEeeCCCeE-EEEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-eE
Q 018705 55 EDVSVVVSKGAL-YTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE 125 (351)
Q Consensus 55 e~i~~d~~~g~l-yv~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~~ 125 (351)
.+++|+|++..+ |+... +..|+.++..+|+.+.+....+... ..++++||+ |+++.... .++.++. ++ .+
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 478999877655 55433 3468999987887666544334444 788999996 55443222 4777774 55 66
Q ss_pred EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l 204 (351)
.+...........++|||+ |+++.... ..-.||++|.++++.+.+..........+++|||+.+
T Consensus 281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 281 QVTDGRSNNTEPTWFPDSQNLAYTSDQA---------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EccCCCCCcCceEECCCCCEEEEEeCCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 6554434456788999995 55543220 1236999998887776665433344568899999987
Q ss_pred EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705 205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 249 (351)
++..... .+++-+...+..+.+... .......+++||+..+..
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEE
Confidence 7755432 333333333444444321 112346788999754443
No 43
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.60 E-value=5.4e-05 Score=71.47 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=97.4
Q ss_pred CCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC--eEEecCCCCCcccE
Q 018705 63 KGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAIVPDASFTNDV 137 (351)
Q Consensus 63 ~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g--~~~l~~~~~~~n~l 137 (351)
++.+|+.. .+|.|..+|..+.+.......+..++.++++.+||+ +|+++..+.+..+|. ++ +..+..+ ..|.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence 45566655 479999999877766443333344431678899996 899886666777774 44 5555554 579999
Q ss_pred EEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--------cccceEEEcCCCCEEEEEe
Q 018705 138 IAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------YFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 138 ~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--------~~~ngi~~~~dg~~lyv~~ 208 (351)
++++||+ +|+++.. .+.+..+|.++.+........ ....+|..++.+...+++-
T Consensus 84 ~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 84 AVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 9999995 6777643 468999998876653322211 2345777788877444454
Q ss_pred cce-eEEeecCCC-Ccee-EEeccCCCCCCceEECCCCCEEEEEe
Q 018705 209 SWK-RYWLKGDRA-GILD-AFIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 209 ~~~-~~~i~~~~~-~~~~-~~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
... ++|+.+... .... ... ....+|.+..+|++|+++++..
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i-~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTI-KVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred ccCCeEEEEEeccccccceeee-cccccccccccCcccceeeecc
Confidence 433 788764221 1111 111 2234678889999998665543
No 44
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=5.4e-05 Score=73.20 Aligned_cols=175 Identities=11% Similarity=0.100 Sum_probs=105.4
Q ss_pred ceEEEeeCCCeE-EEEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eE
Q 018705 55 EDVSVVVSKGAL-YTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VE 125 (351)
Q Consensus 55 e~i~~d~~~g~l-yv~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~ 125 (351)
.++.|+|++..+ |+...+ ..|++++..+|+.+.+....+... ..++.++|+ |++.... ..++.++. ++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 567888777665 565443 369999998887766554444444 678899995 4443322 24788875 55 55
Q ss_pred EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l 204 (351)
.+...........+++||. |+++... .....||+++.++++.+.+..........+++|||+.+
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 5544333344567899984 6666432 11236999998888776654332233346799999988
Q ss_pred EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 018705 205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247 (351)
Q Consensus 205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 247 (351)
++..... .+++-+...+..+.+.+. +......++++|+..+
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLI 389 (430)
T ss_pred EEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEE
Confidence 8866433 344433333444444321 1223457888887443
No 45
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.59 E-value=5.7e-06 Score=81.58 Aligned_cols=144 Identities=11% Similarity=0.103 Sum_probs=97.9
Q ss_pred CCccccceEEc-CCCCEEEEeCCCCeEEEc-CCC---eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCccccccccc
Q 018705 92 DSQSLLGLTTT-KDGGVILCDNEKGLLKVT-EEG---VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAE 165 (351)
Q Consensus 92 ~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~-~~g---~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~ 165 (351)
..-+. ||.|| ++-.+|.+|....-++.. ..| .+.+...+..|.+|++|.-+ ++|++|+.. +
T Consensus 1024 ~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~l---------D--- 1090 (1289)
T KOG1214|consen 1024 GSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVL---------D--- 1090 (1289)
T ss_pred cceee-eeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeecccc---------c---
Confidence 34567 99999 666788888766444443 344 44455556899999999976 799999861 0
Q ss_pred ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCC
Q 018705 166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPD 242 (351)
Q Consensus 166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~ 242 (351)
.=.+-.+|.+ .+...+..++.+|.+|++++-+.-||+++..+ ++-..+....+.++++..--++|+|+.+|+.
T Consensus 1091 ---~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1091 ---KIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPF 1166 (1289)
T ss_pred ---hhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcc
Confidence 0135556654 23334567899999999999877799999876 3333222223346666544578999999998
Q ss_pred CCE--EEEEecC
Q 018705 243 GSF--WIGLIKM 252 (351)
Q Consensus 243 G~l--wva~~~~ 252 (351)
.++ ||-.+..
T Consensus 1167 s~~LCWvDAGt~ 1178 (1289)
T KOG1214|consen 1167 SKLLCWVDAGTK 1178 (1289)
T ss_pred cceeeEEecCCc
Confidence 763 7765543
No 46
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=0.00015 Score=70.24 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=89.2
Q ss_pred EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-E-EEEeC--CCCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V-ILCDN--EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY 146 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L-~v~d~--~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly 146 (351)
+|+.+|.+++..+.+........ ..++.+||+ | |+... ...++.++. +| .+.+..........+++|||. |+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 57777764444444443333344 788889996 3 33332 235777774 55 555543323445678999994 66
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc-e--eEEeecCCCCce
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-K--RYWLKGDRAGIL 223 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~--~~~i~~~~~~~~ 223 (351)
++.+. .....||.+|.++++.+.+..........+++|||+.++++... + .+++-+...+..
T Consensus 262 ~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 262 MSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred EEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 65432 11246999999888877665443334457899999988776533 2 444433323333
Q ss_pred eEEeccCCCCCCceEECCCCCEE
Q 018705 224 DAFIENLPGGPDNINLAPDGSFW 246 (351)
Q Consensus 224 ~~~~~~~~g~pd~i~~d~~G~lw 246 (351)
+.+... .+......++++|+..
T Consensus 327 ~~lt~~-~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 327 RRISFG-GGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEeecC-CCcccCeEECCCCCEE
Confidence 333221 2222346788888743
No 47
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=0.00028 Score=68.21 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=89.2
Q ss_pred EEEEEEcCCCeEEEEeecCCccccceEEcCCCCEE--EEeC--CCCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVI--LCDN--EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY 146 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~--v~d~--~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly 146 (351)
+|+.+|.+++..+.+........ ..++++||+.+ +... ...++.++. .| .+.+..........+++|||+ |+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 46666654333334333323334 78899999633 3322 124666664 55 555543323345689999994 76
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCce
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGIL 223 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~~ 223 (351)
++.+.. ....||.+|.++++.+.+..........+++|||+.|+++.. .+ .++.-+...+..
T Consensus 259 ~~~~~~---------------g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 259 FALSKT---------------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred EEEcCC---------------CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 654320 123699999988887776554444567889999997766543 32 454433323333
Q ss_pred eEEeccCCCCCCceEECCCCCEEEE
Q 018705 224 DAFIENLPGGPDNINLAPDGSFWIG 248 (351)
Q Consensus 224 ~~~~~~~~g~pd~i~~d~~G~lwva 248 (351)
+.+... .+......++++|+..+.
T Consensus 324 ~~lt~~-~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 324 QRITWE-GSQNQDADVSSDGKFMVM 347 (429)
T ss_pred EEeecC-CCCccCEEECCCCCEEEE
Confidence 333211 122345678899974443
No 48
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.50 E-value=6.2e-05 Score=71.91 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCC-CCCceEECCCCCE
Q 018705 168 PYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSF 245 (351)
Q Consensus 168 ~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~l 245 (351)
..|.++.+|+++|+... ......+..++. +++.+|+.+..+ .+.++- ..|+..--.+.+.+ ......+ .+|.+
T Consensus 264 ~~g~l~ald~~tG~~~W-~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~sp~v-~~g~l 338 (394)
T PRK11138 264 YNGNLVALDLRSGQIVW-KREYGSVNDFAV--DGGRIYLVDQNDRVYALDT-RGGVELWSQSDLLHRLLTAPVL-YNGYL 338 (394)
T ss_pred cCCeEEEEECCCCCEEE-eecCCCccCcEE--ECCEEEEEcCCCeEEEEEC-CCCcEEEcccccCCCcccCCEE-ECCEE
Confidence 35788889988886532 222222223333 334588877665 344432 23332111111111 1111222 35788
Q ss_pred EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCE
Q 018705 246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGN 325 (351)
Q Consensus 246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~ 325 (351)
|++... +.+..+|+++|+++..+....+. ..++-...+++
T Consensus 339 ~v~~~~-------------------------------------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~ 378 (394)
T PRK11138 339 VVGDSE-------------------------------------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDK 378 (394)
T ss_pred EEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCE
Confidence 887543 46888998899988777543221 22333456889
Q ss_pred EEEEecCCCeEEEEeCC
Q 018705 326 LYLASLQSNFIGILPLD 342 (351)
Q Consensus 326 L~ig~~~~~~i~~~~~~ 342 (351)
||+++. .+.++.++++
T Consensus 379 l~v~t~-~G~l~~~~~~ 394 (394)
T PRK11138 379 LLIQAR-DGTVYAITRP 394 (394)
T ss_pred EEEEeC-CceEEEEeCC
Confidence 999987 6678888764
No 49
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.49 E-value=0.00023 Score=62.40 Aligned_cols=221 Identities=19% Similarity=0.219 Sum_probs=143.5
Q ss_pred CCeEEEEEcCCEEEEEEcCC-----CeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecCCCC
Q 018705 63 KGALYTATRDGWVKYFILHN-----ETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVPDAS 132 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~-----g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~~~~ 132 (351)
-+.++.+..|..|..++... |.. +.+........ +++..++|+..++.+..+.++++. .| .++|.....
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 35666677788887776532 222 33333334556 888999999999888889999983 55 455555546
Q ss_pred CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcCCCC-EEEEEec
Q 018705 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNED-FVVVCES 209 (351)
Q Consensus 133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~dg~-~lyv~~~ 209 (351)
.+-++++++|.+-.++-+. +..+..||..++......+. -...+++.|+|+.. .++++..
T Consensus 107 dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred ceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 7888999999887777654 34677887664443333333 34577899999874 3334333
Q ss_pred -ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCC
Q 018705 210 -WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD 286 (351)
Q Consensus 210 -~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
++ ++|=-. +......|. +..++..-+++++||.+-+..+.
T Consensus 170 ~DktvKvWnl~-~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgk----------------------------------- 212 (315)
T KOG0279|consen 170 WDKTVKVWNLR-NCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGK----------------------------------- 212 (315)
T ss_pred CCceEEEEccC-Ccchhhccc-cccccEEEEEECCCCCEEecCCC-----------------------------------
Confidence 33 666221 111112222 23455566789999998877432
Q ss_pred CceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705 287 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 287 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~ 344 (351)
.+.+...|-.+++-++++.. ...+.++++..++.|+.-.....|-++++.+.
T Consensus 213 -dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 213 -DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred -CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence 34556666656776666632 34688899999999999988899999987664
No 50
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=0.0003 Score=68.37 Aligned_cols=156 Identities=8% Similarity=-0.001 Sum_probs=87.0
Q ss_pred EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEE-EeCC--CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VIL-CDNE--KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY 146 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v-~d~~--~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly 146 (351)
+|+.+|.++...+.+........ ...+++||+ |+. .... ..++.++. +| .+.+..........+++|||. |+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~-~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLM-SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEeecCCCccc-CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 45556653333343333333334 678899995 433 3322 24777774 55 555543222334678999995 76
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCce
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGIL 223 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~ 223 (351)
++... .....||.+|.++++.+.+..........+++|||+.++++.... .+++-+...++.
T Consensus 278 ~~~~~---------------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 278 LVLSK---------------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred EEEeC---------------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 65432 012369999998888777655433445678999999887765432 444333223443
Q ss_pred eEEeccCCCCCCceEECCCCCEE
Q 018705 224 DAFIENLPGGPDNINLAPDGSFW 246 (351)
Q Consensus 224 ~~~~~~~~g~pd~i~~d~~G~lw 246 (351)
+.+... ........++++|+..
T Consensus 343 ~~Lt~~-g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 343 SRLTFE-GEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEecC-CCCCcCeeECCCCCEE
Confidence 333211 1122345788899743
No 51
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.48 E-value=0.00049 Score=65.26 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=64.9
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCCC-C
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPDA-S 132 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~~-~ 132 (351)
.+++++ ++.+|++..+|.++.+|..+|+..--.........+.+.+ ++++|+++....++.++. +|...+.... .
T Consensus 59 ~~p~v~--~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 59 LQPAVA--GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred cceEEE--CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 355664 7899999999999999988887632112222222134443 678999887777899995 6722221111 1
Q ss_pred CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183 (351)
Q Consensus 133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 183 (351)
.+.+..+-.++.+|+... .|.|+.+|+++|+..
T Consensus 136 ~~~~~p~v~~~~v~v~~~------------------~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 136 EVLSPPLVANGLVVVRTN------------------DGRLTALDAATGERL 168 (377)
T ss_pred eeecCCEEECCEEEEECC------------------CCeEEEEEcCCCcee
Confidence 111111113456777543 367899998877654
No 52
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.45 E-value=0.00013 Score=65.50 Aligned_cols=233 Identities=17% Similarity=0.214 Sum_probs=136.4
Q ss_pred CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-----e----E-EEE----eecC--CccccceE
Q 018705 37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-----T----L-VNW----KHID--SQSLLGLT 100 (351)
Q Consensus 37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-----~----~-~~~----~~~~--~~p~~gl~ 100 (351)
+.+|+.-++. +..|=+++.. ++.||+++... |+++-.... + . ..| .... -+.+ .|+
T Consensus 38 ~g~l~~~~r~----F~r~MGl~~~--~~~l~~~t~~q-iw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia 109 (335)
T TIGR03032 38 NGELDVFERT----FPRPMGLAVS--PQSLTLGTRYQ-LWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLA 109 (335)
T ss_pred CCcEEEEeec----cCccceeeee--CCeEEEEEcce-eEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-hee
Confidence 4445544444 5567789885 78999998765 888821111 1 1 011 1111 2456 788
Q ss_pred EcCCCCEEEEeCC-CCeEEEcCCC--e--------EEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705 101 TTKDGGVILCDNE-KGLLKVTEEG--V--------EAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (351)
Q Consensus 101 ~d~~G~L~v~d~~-~gl~~~~~~g--~--------~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~ 168 (351)
+ .++++|+.+.. +.+..++++- + +.++.+. -..|+++.....--|+|.-+..-....|. ++..
T Consensus 110 ~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~ 184 (335)
T TIGR03032 110 L-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRR 184 (335)
T ss_pred e-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----cccc
Confidence 8 67788877654 4566666432 2 2222222 57899998654457877643111111111 1233
Q ss_pred CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EE
Q 018705 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FW 246 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lw 246 (351)
+|++. +|-.+++ ++.+++.+|.+-.+. +|+ ||++++.. .+...+...|+.+..+ ..||+|.|+.+. |+ ++
T Consensus 185 ~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~G~~e~Va-~vpG~~rGL~f~--G~llv 256 (335)
T TIGR03032 185 DGGCV-IDIPSGE--VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQAGKFQPVA-FLPGFTRGLAFA--GDFAF 256 (335)
T ss_pred CCeEE-EEeCCCC--EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCCCcEEEEE-ECCCCCccccee--CCEEE
Confidence 45544 5655564 567899999887775 555 99999877 4443345567777776 689999999997 66 67
Q ss_pred EEEecCC-chhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC
Q 018705 247 IGLIKMN-QTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP 308 (351)
Q Consensus 247 va~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 308 (351)
|++...| +..|.-+ |.-.++-. ..-+|..+|-.+|+++..+.-.
T Consensus 257 VgmSk~R~~~~f~gl---pl~~~l~~---------------~~CGv~vidl~tG~vv~~l~fe 301 (335)
T TIGR03032 257 VGLSKLRESRVFGGL---PIEERLDA---------------LGCGVAVIDLNSGDVVHWLRFE 301 (335)
T ss_pred EEeccccCCCCcCCC---chhhhhhh---------------hcccEEEEECCCCCEEEEEEeC
Confidence 8887766 3333100 11111111 1136888888788888777653
No 53
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.44 E-value=1e-06 Score=64.38 Aligned_cols=73 Identities=34% Similarity=0.572 Sum_probs=54.4
Q ss_pred ccEEEccCCcEEEEeCCCccCCcccc--cccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 135 NDVIAASDGTLYFTVASTKYTPTDFY--KDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 135 n~l~~d~dG~ly~t~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
|||+.-...++|+|+.... .+.+. .+.+.+.+.+.|..||++ +.+.+++++.+||||++||+++.|||++..+
T Consensus 1 NDIvavG~~sFy~TNDhyf--~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYF--TDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLA 75 (86)
T ss_pred CCEEEECcCcEEEECchhh--CcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence 5666655567999987522 22221 233335567889999984 6788899999999999999999999999876
No 54
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.44 E-value=0.00027 Score=67.88 Aligned_cols=175 Identities=11% Similarity=0.046 Sum_probs=103.8
Q ss_pred eEEEeeCCCeEEEEE-cC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEE
Q 018705 56 DVSVVVSKGALYTAT-RD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEA 126 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~-~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~ 126 (351)
+++++|++..++... .+ ..|+.++..+++.+......+... ..++.++|+ |+++... ..++.++. ++ .+.
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR 272 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence 456787666664433 32 479999988887666554444555 788999985 5554332 24777774 45 555
Q ss_pred ecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705 127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly 205 (351)
+...........+++||. |+++... .....||++|.++++.+.+.........++++|||+.++
T Consensus 273 l~~~~~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 273 LTNGPGIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 543322233567888985 5554332 012369999988777766654444556788999999888
Q ss_pred EEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705 206 VCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG 248 (351)
Q Consensus 206 v~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 248 (351)
++.... ++++-+...+..+.+... .......+.++|+ |+.+
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGERVLTDT--GLDESPSFAPNGRMILYA 382 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeEEccCC--CCCCCceECCCCCEEEEE
Confidence 876543 344333222333333321 1233457778886 4443
No 55
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.43 E-value=6.3e-05 Score=64.87 Aligned_cols=177 Identities=17% Similarity=0.186 Sum_probs=105.8
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCC-CCEEEEeCCCCeEEEc--CCC--eEEe-c
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT--EEG--VEAI-V 128 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~-G~L~v~d~~~gl~~~~--~~g--~~~l-~ 128 (351)
.++.|..++..+|+|..||.+..||...-..++........+ .+...++ +.|+++|..+ -++++ .+. .+.+ +
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg-~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSG-NIRVWDLGENSCTHELIP 164 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCC-cEEEEEccCCccccccCC
Confidence 466666556778999999988888875533332222223345 7888764 5899998654 44554 233 3333 3
Q ss_pred CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Eee--cCc----cccceEEEcCCC
Q 018705 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH--EGF----YFANGIALSKNE 201 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~--~~~----~~~ngi~~~~dg 201 (351)
.....+.++.+++||...++... .|+.|.|+.-+++.. .+. ..+ .+.--+.+|||+
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 33478899999999987766543 467777765443321 111 111 223346789999
Q ss_pred CEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 202 DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 202 ~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
++|--+++.. ++|-.+.- -..+...+......-+.+|+.||.+.|+...
T Consensus 228 k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 8666666665 67754321 1223222222223445688999998887654
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.39 E-value=0.00018 Score=68.30 Aligned_cols=127 Identities=11% Similarity=0.071 Sum_probs=68.2
Q ss_pred cCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCC-CCCceEECCCCC
Q 018705 167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPG-GPDNINLAPDGS 244 (351)
Q Consensus 167 ~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~ 244 (351)
...|.++.+|+++|+...... .......++ +++.+|+.+..+ .+.++ ...|+..--...+.+ ....... .+++
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~~~G~l~~~d-~~tG~~~W~~~~~~~~~~ssp~i-~g~~ 322 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTDADGVVVALD-RRSGSELWKNDELKYRQLTAPAV-VGGY 322 (377)
T ss_pred EcCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEECCCCeEEEEE-CCCCcEEEccccccCCccccCEE-ECCE
Confidence 345789999998887543222 222222333 344688877655 33333 223332111101111 0111223 3457
Q ss_pred EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECC
Q 018705 245 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDG 324 (351)
Q Consensus 245 lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g 324 (351)
+|++... +.+..+|+.+|+.+..+..+.+. ..++-...++
T Consensus 323 l~~~~~~-------------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~~ 362 (377)
T TIGR03300 323 LVVGDFE-------------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVVVGD 362 (377)
T ss_pred EEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEEECC
Confidence 8877533 46888998779998887643321 2233345678
Q ss_pred EEEEEecCCCeEEEE
Q 018705 325 NLYLASLQSNFIGIL 339 (351)
Q Consensus 325 ~L~ig~~~~~~i~~~ 339 (351)
+||+++. .+.|+.|
T Consensus 363 ~l~v~~~-dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTR-DGDLYAF 376 (377)
T ss_pred EEEEEeC-CceEEEe
Confidence 9999997 5557665
No 57
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.38 E-value=0.00029 Score=66.60 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=94.1
Q ss_pred CceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC-CeEEE
Q 018705 42 GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKV 119 (351)
Q Consensus 42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~-gl~~~ 119 (351)
.+.++..+. ..+.++++.+++..+|+...+|.|.++|..+++...-...+..|. ++++++||+ +++++... .+..+
T Consensus 28 ~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 28 VVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEE
T ss_pred EEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEe
Confidence 345565542 224567888777889999999999999998888765556778899 999999997 56666444 45555
Q ss_pred cC-CC--eEEecCCC-------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EEEeec
Q 018705 120 TE-EG--VEAIVPDA-------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHE 187 (351)
Q Consensus 120 ~~-~g--~~~l~~~~-------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~ 187 (351)
|. +. ++.+.... .++.+|..++.+.-|+..-. ..+.++.+|....+ ......
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeec
Confidence 63 33 44443321 34556666776664544321 24688888854322 222334
Q ss_pred CccccceEEEcCCCCEEEEEecce-eEEeec
Q 018705 188 GFYFANGIALSKNEDFVVVCESWK-RYWLKG 217 (351)
Q Consensus 188 ~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~ 217 (351)
...+|....+++++++++++.... .+.+.+
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ccccccccccCcccceeeecccccceeEEEe
Confidence 456899999999999888875544 444433
No 58
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00066 Score=65.60 Aligned_cols=155 Identities=9% Similarity=0.020 Sum_probs=83.9
Q ss_pred EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY 146 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly 146 (351)
+|+.+|.++...+.+........ ..++.+||+ |+++.... .++.++. +| .+.+..........+++|||+ |+
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 46666653222233322223334 788899995 44433222 3777774 56 555543223445678999994 66
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc-e--eEEeecCCCCce
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-K--RYWLKGDRAGIL 223 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~--~~~i~~~~~~~~ 223 (351)
++.+. ...-.||.+|.++++.+.+..........+++|||+.++++... + .++.-+...+..
T Consensus 256 ~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 256 VALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred EEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 65432 11236999998777766654432233456899999987775432 2 444432222333
Q ss_pred eEEeccCCCCCCceEECCCCCE
Q 018705 224 DAFIENLPGGPDNINLAPDGSF 245 (351)
Q Consensus 224 ~~~~~~~~g~pd~i~~d~~G~l 245 (351)
+..... ..+.....++++|+.
T Consensus 321 ~~lt~~-g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 321 QRVTFT-GSYNTSPRISPDGKL 341 (427)
T ss_pred EEEecC-CCCcCceEECCCCCE
Confidence 322211 122334678888874
No 59
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00032 Score=67.88 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=103.1
Q ss_pred CceEEEeeCCCeE-EEEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-e
Q 018705 54 PEDVSVVVSKGAL-YTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-V 124 (351)
Q Consensus 54 pe~i~~d~~~g~l-yv~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~ 124 (351)
-.++.|+|++..+ |++..+ ..|+.+|..+++.+.+....+... ..++.+||+ |.++.... .++.++. .+ .
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 4578899877665 444433 369999987776655544334444 788999996 44443222 3666674 45 6
Q ss_pred EEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705 125 EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (351)
Q Consensus 125 ~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ 203 (351)
+.+..........+++|||. |+++... ...-.||.++..++..+.+. ... ...+++|||+.
T Consensus 285 ~~lt~~~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GRG--YSAQISADGKT 346 (429)
T ss_pred EeeccCCCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CCC--CCccCCCCCCE
Confidence 55554434466789999995 6665432 01236888887766655542 111 34679999998
Q ss_pred EEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705 204 VVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 204 lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
+++....+.+.++ ...+..+.+.... ......++++|++.+...
T Consensus 347 ia~~~~~~i~~~D-l~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 347 LVMINGDNVVKQD-LTSGSTEVLSSTF--LDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEEEcCCCEEEEE-CCCCCeEEecCCC--CCCCceECCCCCEEEEEE
Confidence 8776554422222 2223333332111 123467899998666543
No 60
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.001 Score=64.32 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=92.9
Q ss_pred CCeEEEEEcCC------EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-E-EEEeCC--CCeEEEcC-CC-eEEecCC
Q 018705 63 KGALYTATRDG------WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V-ILCDNE--KGLLKVTE-EG-VEAIVPD 130 (351)
Q Consensus 63 ~g~lyv~~~~g------~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L-~v~d~~--~gl~~~~~-~g-~~~l~~~ 130 (351)
....|+..... +|+.+|.+++..+.+........ ..+++++|+ | |+.... ..++.++. +| .+.+...
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~ 241 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF 241 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence 45667754321 47777775554444433333334 778889995 4 334322 24777774 56 5555433
Q ss_pred CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705 131 ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 131 ~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
.......+++|||+ |+++.... ....||++|.++++.+.+...........++|||+.++++..
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKD---------------GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccC---------------CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEEC
Confidence 23344678999994 66654320 123699999988887766543333445689999998877543
Q ss_pred c-e--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705 210 W-K--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 245 (351)
Q Consensus 210 ~-~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l 245 (351)
. + .+++-+...++.+.+... ........++++|+.
T Consensus 307 ~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 307 RGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKT 344 (430)
T ss_pred CCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCE
Confidence 2 2 343332223333332211 112234577888873
No 61
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.00078 Score=65.24 Aligned_cols=155 Identities=12% Similarity=0.066 Sum_probs=86.5
Q ss_pred EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY 146 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly 146 (351)
+|+.+|..++..+.+........ ..+++++|+ |+.+... ..++.++. +| .+.+...........++|||. |+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~-~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPIL-SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEECCCCCCceEeecCCCccc-cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 46666664333444433322334 778889996 4444322 23777774 55 555543223334678999995 66
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCce
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGIL 223 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~~ 223 (351)
++.+. .....||.+|.++++.+.+..........+++|||+.++++.. .+ .+++-+...++.
T Consensus 264 ~~~s~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 264 LTLSR---------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred EEEeC---------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 65432 0123699999988887766544333345789999997777653 22 344332222333
Q ss_pred eEEeccCCCCCCceEECCCCCE
Q 018705 224 DAFIENLPGGPDNINLAPDGSF 245 (351)
Q Consensus 224 ~~~~~~~~g~pd~i~~d~~G~l 245 (351)
+.+... ..+.....++++|+.
T Consensus 329 ~~lt~~-g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 329 ERLTFQ-GNYNARASVSPDGKK 349 (433)
T ss_pred EEeecC-CCCccCEEECCCCCE
Confidence 322211 123345788889973
No 62
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00078 Score=64.83 Aligned_cols=173 Identities=10% Similarity=0.051 Sum_probs=101.6
Q ss_pred eEEEeeCCCe-EEE-EEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eE
Q 018705 56 DVSVVVSKGA-LYT-ATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VE 125 (351)
Q Consensus 56 ~i~~d~~~g~-lyv-~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~ 125 (351)
...|+|+++. +|. ... ...|+.+|..+|+.+.+....+... ...+.+||+ |.+.... ..++.++. .+ .+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence 5688877763 554 443 3579999998888877655444333 566888984 5444322 35788874 55 66
Q ss_pred EecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705 126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l 204 (351)
.+......-..-.++||| .|+|+.... ....||++|.++++.+.+...... + ..+||||+.+
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~I 333 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYI 333 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEE
Confidence 554432112234789999 588876431 123799999998888665432222 2 4899999976
Q ss_pred EEEecc-------e--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705 205 VVCESW-------K--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG 248 (351)
Q Consensus 205 yv~~~~-------~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 248 (351)
.++... + .+++-+...+..+.+... +......++++|+ ++.+
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEE
Confidence 664432 1 333333333444433321 1112357888886 4444
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00057 Score=66.60 Aligned_cols=175 Identities=18% Similarity=0.313 Sum_probs=110.7
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCe--EE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC--eEE
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNET--LV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG--VEA 126 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~--~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g--~~~ 126 (351)
-++.+.+++..+..+..++.+..++..+++ .. .......... .+++.++|...++-.....++++. ++ .++
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence 345667556665566677766666653443 11 1111122345 899999999887777777777762 33 566
Q ss_pred ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEE
Q 018705 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVV 205 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~ly 205 (351)
+......++++++.++|++.++.+. ++.+..||..+++....... -....++++++|++.++
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 6655578899999999998888765 56799999888776554433 34667899999999777
Q ss_pred EEecce--eEEeecCCCCc---eeEEecc-CCCCCCceEECCCCCEEEEE
Q 018705 206 VCESWK--RYWLKGDRAGI---LDAFIEN-LPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 206 v~~~~~--~~~i~~~~~~~---~~~~~~~-~~g~pd~i~~d~~G~lwva~ 249 (351)
.++.++ ++|-. ..+. .+.+... .+..-..+.++++|.+.+..
T Consensus 305 s~s~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 305 SASYDGTIRVWDL--ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred EcCCCccEEEEEC--CCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 776555 55532 2233 1222211 11112456788999754443
No 64
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.30 E-value=0.00067 Score=63.21 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCCceEEEeeCCCeEEEEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCC-CCeEEEcCCC-eEE-
Q 018705 52 NHPEDVSVVVSKGALYTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VEA- 126 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~~g-~~~- 126 (351)
..|+.+++++++..+|+... ++.+..+|..++++..-...++... .....++.....|-.+ ...+.++.+| ...
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 34559999988889999763 6889999998887754323333232 3333333444333222 1222233344 211
Q ss_pred ----ecC-CC---CCcccEEEcc-CCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe------ecC--
Q 018705 127 ----IVP-DA---SFTNDVIAAS-DGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL------HEG-- 188 (351)
Q Consensus 127 ----l~~-~~---~~~n~l~~d~-dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~------~~~-- 188 (351)
+.. .. ..| .+.+ ||+ +|+|.. |.|+.+|.++.+.... ...
T Consensus 184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-------------------G~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-------------------GKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred eeeeecCCccccccCC---ceEcCCCcEEEEecC-------------------CeEEEEecCCCcceecceeeecccccc
Confidence 111 00 344 2233 665 444432 5788888543322211 111
Q ss_pred --ccccce---EEEcCCCCEEEEEecc----------eeEEeecCCCCceeEEeccCCCCCCceEECCCCC--EEEEEec
Q 018705 189 --FYFANG---IALSKNEDFVVVCESW----------KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS--FWIGLIK 251 (351)
Q Consensus 189 --~~~~ng---i~~~~dg~~lyv~~~~----------~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~ 251 (351)
.-.|.| +++++|++++||.... +.+|+-+...++....+ .....|.++++++||+ ||++...
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i-~vG~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI-ELGHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE-eCCCceeeEEECCCCCeEEEEeCCC
Confidence 124555 9999999999995321 15776654444433222 1233578999999998 3444321
Q ss_pred CCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE
Q 018705 252 MNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF 305 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 305 (351)
.+.|..+|.++++.+.++
T Consensus 321 ------------------------------------s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 321 ------------------------------------DKTLYIFDAETGKELSSV 338 (352)
T ss_pred ------------------------------------CCcEEEEECcCCeEEeee
Confidence 235889999888988887
No 65
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.30 E-value=0.00083 Score=58.97 Aligned_cols=192 Identities=11% Similarity=0.130 Sum_probs=117.4
Q ss_pred CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCC
Q 018705 37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKG 115 (351)
Q Consensus 37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g 115 (351)
+.....+.+-..|.-..-++++..++++..+.++.|+.+..||..+|+. +.|........ ++++++|.+-.|+.+...
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcc
Confidence 3334444455455334456778885566667788899999999988755 45555555677 999999999888877777
Q ss_pred eEEEcC-CC--eEEecCC--CCCcccEEEccCC-c-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eec
Q 018705 116 LLKVTE-EG--VEAIVPD--ASFTNDVIAASDG-T-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHE 187 (351)
Q Consensus 116 l~~~~~-~g--~~~l~~~--~~~~n~l~~d~dG-~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~ 187 (351)
.++++. -| +.++... ...++.+.+.|+- . +.++.+. ++.|-.||..+-+++. +..
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----------------DktvKvWnl~~~~l~~~~~g 190 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW-----------------DKTVKVWNLRNCQLRTTFIG 190 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC-----------------CceEEEEccCCcchhhcccc
Confidence 777763 33 3333333 3678899999974 4 4444332 4568888887666543 233
Q ss_pred CccccceEEEcCCCCEEEEE-ecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 188 GFYFANGIALSKNEDFVVVC-ESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 188 ~~~~~ngi~~~~dg~~lyv~-~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.-.+.|-+++||||. +..+ .-++ .+| +...++. ++.-+.......++|.+ .++|++...
T Consensus 191 h~~~v~t~~vSpDGs-lcasGgkdg~~~Lw--dL~~~k~-lysl~a~~~v~sl~fsp-nrywL~~at 252 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGS-LCASGGKDGEAMLW--DLNEGKN-LYSLEAFDIVNSLCFSP-NRYWLCAAT 252 (315)
T ss_pred ccccEEEEEECCCCC-EEecCCCCceEEEE--EccCCce-eEeccCCCeEeeEEecC-CceeEeecc
Confidence 345678899999998 4333 2222 334 2111221 22111111234568876 579998654
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00025 Score=63.06 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=99.0
Q ss_pred EecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEE-Ec-C-
Q 018705 45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK-VT-E- 121 (351)
Q Consensus 45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~-~~-~- 121 (351)
+.+.|.-..-.+|...|.++.+..+..|..|..||.+..+-+......++|. .|+|++|-++++..+...++ ++ +
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecc
Confidence 3455655566788999877777777889999999986554444455556665 89999998888776663433 34 2
Q ss_pred --CC-eEEecCC---CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec----Ccc
Q 018705 122 --EG-VEAIVPD---ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE----GFY 190 (351)
Q Consensus 122 --~g-~~~l~~~---~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~----~~~ 190 (351)
.| .+.+.-. ....++|.+++||. |.+++.. +.++.+|.=+|++..-.. ...
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCC
Confidence 44 5555433 26788999999994 6777654 456777655565432222 223
Q ss_pred ccceEEEcCCCCEEEEEecce
Q 018705 191 FANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 191 ~~ngi~~~~dg~~lyv~~~~~ 211 (351)
.|-..+++||++++..++.++
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred cceeEEECCCCcEEEEecCCC
Confidence 344788999999777777666
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=0.00026 Score=67.65 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=110.0
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCCCCC-------c
Q 018705 63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPDASF-------T 134 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~~~~-------~ 134 (351)
++.+|++..+|.++.+|.++|+..-.....+.......+ .++.+|+....+.++.++. +|...+...... .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 678999988999999999888753211112211101222 2678888877667899995 772222111100 0
Q ss_pred ccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce---------EEEcC--CCCE
Q 018705 135 NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG---------IALSK--NEDF 203 (351)
Q Consensus 135 n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng---------i~~~~--dg~~ 203 (351)
..-++. +|.+|+... +|.++.+|+++|+..... ....|.+ +..+| .++.
T Consensus 199 ~sP~v~-~~~v~~~~~------------------~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 199 SAPATA-FGGAIVGGD------------------NGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCEEE-CCEEEEEcC------------------CCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEECCE
Confidence 111222 355666543 356777777776542211 1111110 11111 2335
Q ss_pred EEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705 204 VVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP 282 (351)
Q Consensus 204 lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
+|+....+ .+.++ ...|+..--. ... .+..+.. .+|++|++...
T Consensus 259 vy~~~~~g~l~ald-~~tG~~~W~~-~~~-~~~~~~~-~~~~vy~~~~~------------------------------- 303 (394)
T PRK11138 259 VYALAYNGNLVALD-LRSGQIVWKR-EYG-SVNDFAV-DGGRIYLVDQN------------------------------- 303 (394)
T ss_pred EEEEEcCCeEEEEE-CCCCCEEEee-cCC-CccCcEE-ECCEEEEEcCC-------------------------------
Confidence 88876555 33333 2234322111 111 1223444 35778887543
Q ss_pred CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705 283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 343 (351)
Q Consensus 283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~ 343 (351)
+.++.+|+++|+.+=......+. ..++....+|+||+++. .+.+..++..+
T Consensus 304 ------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~-~G~l~~ld~~t 354 (394)
T PRK11138 304 ------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDS-EGYLHWINRED 354 (394)
T ss_pred ------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeC-CCEEEEEECCC
Confidence 46888888777754332211111 22333346788888875 45677776543
No 68
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.25 E-value=7.7e-05 Score=72.67 Aligned_cols=150 Identities=15% Similarity=0.262 Sum_probs=110.1
Q ss_pred CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEc-CCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC
Q 018705 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFIL-HNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG 123 (351)
Q Consensus 48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~-~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g 123 (351)
.+...+-.+++|.+++..+..+..|+.|..||. .+++. +++.......+ .++|.++|++++.-...+.++++. .|
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 344556678999976667777888999999998 33333 44444445566 999999999998888889999983 55
Q ss_pred --eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE--EeecCcccc---ceEE
Q 018705 124 --VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT--VLHEGFYFA---NGIA 196 (351)
Q Consensus 124 --~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~--~~~~~~~~~---ngi~ 196 (351)
.+.+......++++++.+||+++++.+. ++.+..||..+++.. ........+ ..+.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence 6666665578899999999988877643 578999999888732 222333334 7899
Q ss_pred EcCCCCEEEEEecce--eEEe
Q 018705 197 LSKNEDFVVVCESWK--RYWL 215 (351)
Q Consensus 197 ~~~dg~~lyv~~~~~--~~~i 215 (351)
++|++++++.+..++ ++|-
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEE
Confidence 999999888877665 6663
No 69
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.24 E-value=0.00017 Score=69.30 Aligned_cols=112 Identities=18% Similarity=0.292 Sum_probs=72.6
Q ss_pred eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-------c-CccccceE
Q 018705 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-------E-GFYFANGI 195 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-------~-~~~~~ngi 195 (351)
++++++.+..|.+|++.|||++||+... .|+|+++++.++..+.+. . +....-||
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlgl 84 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGL 84 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeE
Confidence 5566777789999999999999999852 378999987655433221 1 23456789
Q ss_pred EEcCCC------CEEEEEec-----------ce--eEEeecC--CCCceeEEeccCCCC----CCceEECCCCCEEEEEe
Q 018705 196 ALSKNE------DFVVVCES-----------WK--RYWLKGD--RAGILDAFIENLPGG----PDNINLAPDGSFWIGLI 250 (351)
Q Consensus 196 ~~~~dg------~~lyv~~~-----------~~--~~~i~~~--~~~~~~~~~~~~~g~----pd~i~~d~~G~lwva~~ 250 (351)
+++|+- .+||++.+ .. |+.+... .....+.+...+|.. -..|.+++||.|||++.
T Consensus 85 al~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 85 ALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG 164 (454)
T ss_pred EECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence 999875 36888742 12 5555421 122223333334321 23588999999999998
Q ss_pred cC
Q 018705 251 KM 252 (351)
Q Consensus 251 ~~ 252 (351)
..
T Consensus 165 D~ 166 (454)
T TIGR03606 165 EQ 166 (454)
T ss_pred CC
Confidence 64
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.21 E-value=0.0025 Score=60.55 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=116.8
Q ss_pred eEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-e-cCCccccceEEcCCCCEEEEeCCCCeEEEc-
Q 018705 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-H-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT- 120 (351)
Q Consensus 44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~-~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~- 120 (351)
.++..|....-.+++..+++..+|.++.||.|..|+...|..-++. . ...... +|+.+..+.++.+.+...+.++.
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEec
Confidence 3444555556678888877788999999999999998666554332 1 123345 88888889999998877676665
Q ss_pred C-CCe-EEe-cCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEE
Q 018705 121 E-EGV-EAI-VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA 196 (351)
Q Consensus 121 ~-~g~-~~l-~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~ 196 (351)
+ .|. ... ..-...|-++++.++| .+.+++.. .|..+...++ .... .-...+.++|
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~-------------------~iv~l~~~~~-~~~~-~~~y~~s~vA 450 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS-------------------DIVLLQDQTK-VSSI-PIGYESSAVA 450 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCCCEEEEEecC-------------------cEEEEecCCc-ceee-ccccccceEE
Confidence 2 331 111 1111678899999997 45555533 3555442222 2222 2234678899
Q ss_pred EcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 197 LSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 197 ~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
++|+++.+-|.-.+. .|.+.+....+ +.......+-+..+++++||.+.+++-.
T Consensus 451 v~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 451 VSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred EcCCCCEEEEecccceEEEEEecCCcccc-eeeeecccCCceEEEECCCCcEEEEecc
Confidence 999999777755444 46666532212 2122234555678899999988777643
No 71
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.21 E-value=0.00022 Score=65.00 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=99.8
Q ss_pred ceEEEeeCCCeEEEEEc-------------CCEEEEEEcCCCeE-EEEeec------CCccccceEEcC-C-----CCEE
Q 018705 55 EDVSVVVSKGALYTATR-------------DGWVKYFILHNETL-VNWKHI------DSQSLLGLTTTK-D-----GGVI 108 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~-------------~g~I~~~d~~~g~~-~~~~~~------~~~p~~gl~~d~-~-----G~L~ 108 (351)
-++.+| +.++|||-.. .-+|+.+|.+++++ +++..+ ....+ .+++|. + +.+|
T Consensus 4 ~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 4 QRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEE
T ss_pred cEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEE
Confidence 368899 7899998431 12799999998876 333221 23345 788885 2 4689
Q ss_pred EEeCC-CCeEEEc-CCC--eEEecCCC-------------------CCcccEEEcc---CC-cEEEEeCCCccCCccccc
Q 018705 109 LCDNE-KGLLKVT-EEG--VEAIVPDA-------------------SFTNDVIAAS---DG-TLYFTVASTKYTPTDFYK 161 (351)
Q Consensus 109 v~d~~-~gl~~~~-~~g--~~~l~~~~-------------------~~~n~l~~d~---dG-~ly~t~~~~~~~~~~~~~ 161 (351)
++|.. .+|+.++ .+| .+++.... ....+++.++ +| .+|+...++
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss--------- 152 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS--------- 152 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT----------
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC---------
Confidence 99987 4788888 466 44432211 2355556554 44 477766431
Q ss_pred ccccccCCceEEEEeCC------C-------CeEEEeecCccccceEEEcCCCCEEEEEecce-e-EEeecCC---CCce
Q 018705 162 DMAEGKPYGQLRKYDPK------L-------KETTVLHEGFYFANGIALSKNEDFVVVCESWK-R-YWLKGDR---AGIL 223 (351)
Q Consensus 162 ~~~~~~~~g~l~~~d~~------~-------~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~-~~i~~~~---~~~~ 223 (351)
..+|+...+ . .+++.+.+......|++++++|. ||+++... . +.....+ ..+.
T Consensus 153 --------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~ 223 (287)
T PF03022_consen 153 --------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENF 223 (287)
T ss_dssp --------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCE
T ss_pred --------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccch
Confidence 134443210 0 12233333334568999999886 99999877 3 2222211 1234
Q ss_pred eEEec-cC-CCCCCceEECC--CCCEEEEEec
Q 018705 224 DAFIE-NL-PGGPDNINLAP--DGSFWIGLIK 251 (351)
Q Consensus 224 ~~~~~-~~-~g~pd~i~~d~--~G~lwva~~~ 251 (351)
++++. .. -.+|+++.++. +|.||+.+..
T Consensus 224 ~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 224 EILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred heeEEcCceeeccceeeeccccCceEEEEECc
Confidence 44443 22 34799999999 9999998754
No 72
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.19 E-value=0.00038 Score=61.76 Aligned_cols=181 Identities=13% Similarity=0.141 Sum_probs=96.0
Q ss_pred cCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeE-EEEeec-CCccccceEEcCCCCEEEEeCCC-CeEEEc--CC-C
Q 018705 51 VNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETL-VNWKHI-DSQSLLGLTTTKDGGVILCDNEK-GLLKVT--EE-G 123 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~-~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~--~~-g 123 (351)
..-+.+|+++|+.+.||+ ....+.|+.++. +|++ +.+... .+.+- ||++-.+|.+.+++... .++.+. .+ .
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 345889999988898886 556789999998 5655 444333 35688 99998888888877543 455554 22 1
Q ss_pred -e-----EEecCCC-----CCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeC--CCCeEEEee---
Q 018705 124 -V-----EAIVPDA-----SFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETTVLH--- 186 (351)
Q Consensus 124 -~-----~~l~~~~-----~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~~~~--- 186 (351)
. +.+.... ....+|+.|+. +++|+.... ...+|+.++. .........
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-HH
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeeccccc
Confidence 1 1122111 45889999997 478876432 1234666654 212222111
Q ss_pred -----cCccccceEEEcCCCCEEEEEe-cceeEEeecCCCCceeEEec---cCC------CCCCceEECCCCCEEEEEe
Q 018705 187 -----EGFYFANGIALSKNEDFVVVCE-SWKRYWLKGDRAGILDAFIE---NLP------GGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 187 -----~~~~~~ngi~~~~dg~~lyv~~-~~~~~~i~~~~~~~~~~~~~---~~~------g~pd~i~~d~~G~lwva~~ 250 (351)
....-+.+++++|....||+-+ ..+++..-+ ..|+...... ... ..|-||++|++|+|||..-
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 0123477899999877777744 343433332 2333322111 111 1478999999999999864
No 73
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.19 E-value=0.003 Score=60.64 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=88.7
Q ss_pred CEEEEEEcCCCeEEEEeecCCccccceEEcCCCCE-EEEeCC---CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-E
Q 018705 73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-L 145 (351)
Q Consensus 73 g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L-~v~d~~---~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-l 145 (351)
..|+.+|..++..+.+........ ..+++++|+. +.+... ..++.++. +| .+.+..........+++|||. |
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 357888775444555544333344 6778899964 333322 24666664 55 544433223445678999984 7
Q ss_pred EEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCc
Q 018705 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGI 222 (351)
Q Consensus 146 y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~ 222 (351)
+++... .....||.+|.++++.+.+...........+++||+.|+++.. .+ .+++-+...+.
T Consensus 249 ~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 249 AVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred EEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 766432 1123699999887776665433222335678999997776543 22 44433322333
Q ss_pred eeEEeccCCCCCCceEECCCCCEEEEE
Q 018705 223 LDAFIENLPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 223 ~~~~~~~~~g~pd~i~~d~~G~lwva~ 249 (351)
...+... ........++++|+..+..
T Consensus 314 ~~~l~~~-~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 314 VRRLTFR-GGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEEeecC-CCCccCeEECCCCCEEEEE
Confidence 3333211 1233456788888754443
No 74
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.18 E-value=0.0017 Score=57.58 Aligned_cols=193 Identities=17% Similarity=0.194 Sum_probs=104.6
Q ss_pred CCccccceEEcCC-CCEEEEeCC-CCeEEEcCCC--eEEec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccc
Q 018705 92 DSQSLLGLTTTKD-GGVILCDNE-KGLLKVTEEG--VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG 166 (351)
Q Consensus 92 ~~~p~~gl~~d~~-G~L~v~d~~-~gl~~~~~~g--~~~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~ 166 (351)
..++. ||+++++ +.||..... ..++.++.+| ++.+. .+...+.+|+.-.+|.+.+++..
T Consensus 21 ~~e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er--------------- 84 (248)
T PF06977_consen 21 LDELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER--------------- 84 (248)
T ss_dssp -S-EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETT---------------
T ss_pred cCCcc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC---------------
Confidence 34577 9999986 568876544 4578888777 45443 22367899999888888887743
Q ss_pred cCCceEEEEeC--CCCeE-----EEeecCc-----cccceEEEcCCCCEEEEEecce---eEEeecCC-CCceeEE----
Q 018705 167 KPYGQLRKYDP--KLKET-----TVLHEGF-----YFANGIALSKNEDFVVVCESWK---RYWLKGDR-AGILDAF---- 226 (351)
Q Consensus 167 ~~~g~l~~~d~--~~~~~-----~~~~~~~-----~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~-~~~~~~~---- 226 (351)
.++|+.++. .+..+ +.+.-++ ..--|+|+++.++.||++.... .|.+.... .......
T Consensus 85 --~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 85 --DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp --TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred --CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 346665543 22222 1111111 1235899999988888876544 34444311 0111100
Q ss_pred -e-cc-CCCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEE
Q 018705 227 -I-EN-LPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKII 302 (351)
Q Consensus 227 -~-~~-~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~ 302 (351)
. .. .-.-+.++.+|+. |+|||=... ...++.+|. +|++.
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------------------------------s~~l~~~d~-~G~~~ 205 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDE------------------------------------SRLLLELDR-QGRVV 205 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETT------------------------------------TTEEEEE-T-T--EE
T ss_pred cccccceeccccceEEcCCCCeEEEEECC------------------------------------CCeEEEECC-CCCEE
Confidence 0 00 0012567888765 578886543 237999999 99988
Q ss_pred EEEECCCC-----CcccceeEEEEE-CCEEEEEecCCCeEEEEe
Q 018705 303 RDFNDPDA-----TYISFVTSAAEF-DGNLYLASLQSNFIGILP 340 (351)
Q Consensus 303 ~~~~~~~g-----~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~ 340 (351)
..+.-..| ..+.+.-+++.+ +|+|||.+= .|..++|.
T Consensus 206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~ 248 (248)
T PF06977_consen 206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE 248 (248)
T ss_dssp EEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred EEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence 87764433 223456677765 689999984 78888874
No 75
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.0021 Score=60.46 Aligned_cols=162 Identities=13% Similarity=0.190 Sum_probs=90.7
Q ss_pred ceEecCCCcCCCceEEEeeCCCeEEEEEcC-CEEEEEEcCCCeE--------EEEeecCC----------------cccc
Q 018705 43 LTKLGEGCVNHPEDVSVVVSKGALYTATRD-GWVKYFILHNETL--------VNWKHIDS----------------QSLL 97 (351)
Q Consensus 43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~-g~I~~~d~~~g~~--------~~~~~~~~----------------~p~~ 97 (351)
++.+..+ +..|.+++..|++ .+.+.... |++..+.. .+.. .......+ .+.
T Consensus 59 ~~~~a~g-Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~-g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~- 134 (399)
T COG2133 59 VEVVAQG-LEHPWGLARLPDG-VLLVTERPTGRLRLISD-GGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF- 134 (399)
T ss_pred ccccccc-ccCchhheecCCc-eEEEEccCCccEEEecC-CCcccccccccceEEeccCCCccceEecccccccceeee-
Confidence 4567777 8899999999765 66655544 76655542 2211 11111111 123
Q ss_pred ceEEcCCCCEEEEeCCCCeEEEcC-C----C-eEEecC---C-CCCcccEEEccCCcEEEEeCCCc-cC----Ccccccc
Q 018705 98 GLTTTKDGGVILCDNEKGLLKVTE-E----G-VEAIVP---D-ASFTNDVIAASDGTLYFTVASTK-YT----PTDFYKD 162 (351)
Q Consensus 98 gl~~d~~G~L~v~d~~~gl~~~~~-~----g-~~~l~~---~-~~~~n~l~~d~dG~ly~t~~~~~-~~----~~~~~~~ 162 (351)
++++ ..+.+|+++.. .+.+++. + + ..++.. . ..+-..|+++|||.||++..+.. .. .......
T Consensus 135 ~~a~-~~~~~~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk 212 (399)
T COG2133 135 GISE-PGGGLYVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGK 212 (399)
T ss_pred EEEe-ecCCceEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccc
Confidence 3333 23344554422 3444441 1 1 111211 1 14567799999999999987521 00 0001111
Q ss_pred cccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 163 MAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 163 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
+++. ....++..|..+...+++..+..+|.|++++|....||+++.+.
T Consensus 213 ~~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 213 VLRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred eeee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 1211 12345666666666778888999999999999955699998765
No 76
>PTZ00421 coronin; Provisional
Probab=98.16 E-value=0.0053 Score=60.26 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=87.9
Q ss_pred CceEEEee-CCCeEEEEEcCCEEEEEEcCCCe--------EEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC--
Q 018705 54 PEDVSVVV-SKGALYTATRDGWVKYFILHNET--------LVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-- 121 (351)
Q Consensus 54 pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~g~--------~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-- 121 (351)
-.+++|+| ++..|.++..|+.|..||..++. ...+........ .+++.+++ +++++....+.++++.
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 45889987 45678889999999999875442 122222233455 88999875 5666655667777763
Q ss_pred CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--cccceEEE
Q 018705 122 EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIAL 197 (351)
Q Consensus 122 ~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngi~~ 197 (351)
++ ...+......++++++.++|.+.++.+. ++.|..||+.+++........ .....+.+
T Consensus 157 tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLW 219 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCcceEEEE
Confidence 45 4444433356889999999988777654 568999998877643222211 12234667
Q ss_pred cCCCCEEEEE
Q 018705 198 SKNEDFVVVC 207 (351)
Q Consensus 198 ~~dg~~lyv~ 207 (351)
.+++..++.+
T Consensus 220 ~~~~~~ivt~ 229 (493)
T PTZ00421 220 AKRKDLIITL 229 (493)
T ss_pred cCCCCeEEEE
Confidence 7777755443
No 77
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.15 E-value=0.0025 Score=55.99 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=93.7
Q ss_pred EEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-e-EE-ecCC---
Q 018705 58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EA-IVPD--- 130 (351)
Q Consensus 58 ~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~-~~-l~~~--- 130 (351)
++. .++.+|++..++.|+.+|..+|+..--........ ....-.++.+|++...+.++.++ ++| . -. ....
T Consensus 32 ~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 32 AVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp EEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred EEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 443 58999999999999999998997632222223323 33344577899988666799999 578 2 22 1111
Q ss_pred C--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc------------ceEE
Q 018705 131 A--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA------------NGIA 196 (351)
Q Consensus 131 ~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~------------ngi~ 196 (351)
. .......++ ++.+|+.... +.|+.+|+++|+....... ..+ ++-.
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~------------------g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 110 AGVRSSSSPAVD-GDRLYVGTSS------------------GKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp CSTB--SEEEEE-TTEEEEEETC------------------SEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEE
T ss_pred cccccccCceEe-cCEEEEEecc------------------CcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccce
Confidence 1 122223333 4467776643 6899999998877432222 221 1222
Q ss_pred EcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705 197 LSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 197 ~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 249 (351)
+..++ .+|++...+ .+.+ +...++.. .... ...........++.||++.
T Consensus 170 ~~~~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~-~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 170 VISDG-RVYVSSGDGRVVAV-DLATGEKL-WSKP-ISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp ECCTT-EEEEECCTSSEEEE-ETTTTEEE-EEEC-SS-ECECEECCCTEEEEEE
T ss_pred EEECC-EEEEEcCCCeEEEE-ECCCCCEE-EEec-CCCccCCceeeCCEEEEEe
Confidence 33344 688887666 4555 33444432 2212 2222332344566788886
No 78
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.12 E-value=0.00028 Score=65.08 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=108.7
Q ss_pred CCCcCCCceEEEeeC--CCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--C
Q 018705 48 EGCVNHPEDVSVVVS--KGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--E 122 (351)
Q Consensus 48 ~~~~~~pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~ 122 (351)
.|.-....++.|.|. +..+-++..||.+..|+..+. .+..+.....+.. .++|.|+|+...+......++++. +
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~t 292 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLET 292 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhccccc
Confidence 343344557777775 346778888998877776442 2234444446677 899999999988887777777774 3
Q ss_pred CeEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcC
Q 018705 123 GVEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSK 199 (351)
Q Consensus 123 g~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~ 199 (351)
+.+.+... ...+.++++-+||.+-.|.+... .|+|| |..+|+-..+. .......+|+|+|
T Consensus 293 k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~---------------~~RvW--DlRtgr~im~L~gH~k~I~~V~fsP 355 (459)
T KOG0272|consen 293 KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS---------------LGRVW--DLRTGRCIMFLAGHIKEILSVAFSP 355 (459)
T ss_pred chhhHhhcccccccceeEecCCCceeeccCccc---------------hhhee--ecccCcEEEEecccccceeeEeECC
Confidence 32222221 26789999999999988765421 23443 44455544433 3455567899999
Q ss_pred CCCEEEEEecce--eEEeecCCCCceeEEe-ccCCCCCCceEECC-CCCEEEEEe
Q 018705 200 NEDFVVVCESWK--RYWLKGDRAGILDAFI-ENLPGGPDNINLAP-DGSFWIGLI 250 (351)
Q Consensus 200 dg~~lyv~~~~~--~~~i~~~~~~~~~~~~-~~~~g~pd~i~~d~-~G~lwva~~ 250 (351)
+|-.|--+..++ ++|-- . ++.+++. .........+.+++ .|.+.++..
T Consensus 356 NGy~lATgs~Dnt~kVWDL--R-~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 356 NGYHLATGSSDNTCKVWDL--R-MRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred CceEEeecCCCCcEEEeee--c-ccccceecccccchhhheEecccCCeEEEEcc
Confidence 996333334444 67722 1 1112221 11112345578887 566666654
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=0.00095 Score=62.32 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=101.5
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE---eecCCccccceEEcCCCC-EEEEeCC-CCeEEEcC-CC-eE
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG-VE 125 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~---~~~~~~p~~gl~~d~~G~-L~v~d~~-~gl~~~~~-~g-~~ 125 (351)
+-.++.|.|....+.++..||.+..+.. +|+.... ......|+....|.++|. ..++... .=+|.++- +. +.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqv-DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEe-cCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 4568899877778888888885444433 3443221 222344654677888886 3333322 23455552 44 44
Q ss_pred EecCC----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705 126 AIVPD----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE 201 (351)
Q Consensus 126 ~l~~~----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg 201 (351)
.+... ........+++++.+.+.... .|.|+.+..+|++...-..--....+++|+.|+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS 356 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence 33222 146677789999886554432 567888888777653322222345678999999
Q ss_pred CEEEEEecceeEEeecCC-CCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 202 DFVVVCESWKRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 202 ~~lyv~~~~~~~~i~~~~-~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
+.||++...+.+|+-+-. ..-...+.+.-.-...-++.+.+|. |+|++.
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 988887655544433221 1223445543111112356667777 666543
No 80
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.0032 Score=60.83 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=99.8
Q ss_pred ceEEEeeCCCe---EEEEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEE--c-CC
Q 018705 55 EDVSVVVSKGA---LYTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKV--T-EE 122 (351)
Q Consensus 55 e~i~~d~~~g~---lyv~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~--~-~~ 122 (351)
.+.+|+|++.. +|++..+ ..|+.++..+|+.+.+....+... ..++.+||+ |.++... ..++.. + ..
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 35689977653 4576654 369999998887776665555555 788899994 4333321 134442 3 22
Q ss_pred ---C-eEEecCCC-CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCC--CCeEEEeecCccccce
Q 018705 123 ---G-VEAIVPDA-SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKETTVLHEGFYFANG 194 (351)
Q Consensus 123 ---g-~~~l~~~~-~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~~~~~~~~~ng 194 (351)
| .+.+.... ......+++|||. |+++.... ....||+++.+ +++.+.+.........
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~---------------g~~~ly~~~~~~~g~~~~~lt~~~~~~~~ 331 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD---------------GRPRIYIMQIDPEGQSPRLLTKKYRNSSC 331 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC---------------CCceEEEEECcccccceEEeccCCCCccc
Confidence 3 34443321 2335678999995 66554320 12258887653 3334444333233345
Q ss_pred EEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705 195 IALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG 248 (351)
Q Consensus 195 i~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 248 (351)
.+++|||+.|+++.... .+++-+...++.+.+... +....+..+.++|+ |+.+
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEE
Confidence 78999999777754432 455544334444444322 22335578888887 4433
No 81
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.0067 Score=58.42 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=92.8
Q ss_pred CeEEEEEc----CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC--EEEEeCC---CCeEEEcC-CC-eEEecCCCC
Q 018705 64 GALYTATR----DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG--VILCDNE---KGLLKVTE-EG-VEAIVPDAS 132 (351)
Q Consensus 64 g~lyv~~~----~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~--L~v~d~~---~gl~~~~~-~g-~~~l~~~~~ 132 (351)
..+|+... ..+|+..|.+....+.+... + ++....+.++|+ ++++... ..++.++. +| .+.+.....
T Consensus 156 r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g 233 (419)
T PRK04043 156 RKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG 233 (419)
T ss_pred eEEEEEEccCCCcceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC
Confidence 44555442 23677777733333434333 3 332677889985 5554433 34888885 66 666654322
Q ss_pred CcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 133 FTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 133 ~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
......++||| .+.++.+. .....||.+|.++++.+.+...-.......++|||+.|++.....
T Consensus 234 ~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~ 298 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL 298 (419)
T ss_pred cEEeeEECCCCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC
Confidence 23345689999 57666542 113579999988887776654322222347999999888866443
Q ss_pred ---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705 212 ---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 212 ---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 249 (351)
.+++-+...++.+.+... +. .+..++++|+..+-.
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYS 336 (419)
T ss_pred CCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEE
Confidence 333333333444333211 11 235788999744433
No 82
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.06 E-value=0.00073 Score=59.84 Aligned_cols=135 Identities=20% Similarity=0.225 Sum_probs=87.8
Q ss_pred cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC---eE
Q 018705 51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VE 125 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g---~~ 125 (351)
-.-.|+|+.- ++.+|.-+ .++..+.+|+++-+. ..+.. .+.-- ||+.|. ..||++|....++.+++.. .+
T Consensus 89 ~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGW-GLt~dg-~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 89 RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGW-GLTSDG-KRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS---EEEECS-SCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred cccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEec-CCcce-EEEcCC-CEEEEECCccceEEECCcccceEE
Confidence 3457888886 67788755 578888999866433 33322 34556 899663 3899999988899999743 22
Q ss_pred Eec---CC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC------------
Q 018705 126 AIV---PD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------ 188 (351)
Q Consensus 126 ~l~---~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------ 188 (351)
.+. .. ....|-+..- +|.||..... ...|.++||.+|++....+-
T Consensus 164 ~i~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~ 225 (264)
T PF05096_consen 164 TIQVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKS 225 (264)
T ss_dssp EEE-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTS
T ss_pred EEEEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccc
Confidence 221 11 1567777664 7899988765 45899999999998765421
Q ss_pred ----ccccceEEEcCCCCEEEEEe
Q 018705 189 ----FYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 189 ----~~~~ngi~~~~dg~~lyv~~ 208 (351)
...-||||.+++.+.+||+-
T Consensus 226 ~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 226 RQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp T--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccCCeeEeEeEeCCCCEEEEEe
Confidence 13478999999999999975
No 83
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=0.003 Score=56.24 Aligned_cols=181 Identities=11% Similarity=0.125 Sum_probs=96.9
Q ss_pred cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeE-EEEeec-CCccccceEEcCCCCEEEEeCCCC-e--EEEcCCC-
Q 018705 51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETL-VNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-L--LKVTEEG- 123 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~-~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~g-l--~~~~~~g- 123 (351)
...-.+++++|+.+.||+.+. .-.|+.++. +|.+ +++.-. -..|- +|.+-.+|+.-+++...+ + +.+++++
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 344679999999999997554 447888887 5654 444222 24577 787777776666765543 3 3334443
Q ss_pred eEEecC-----C-----CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-----
Q 018705 124 VEAIVP-----D-----ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE----- 187 (351)
Q Consensus 124 ~~~l~~-----~-----~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~----- 187 (351)
...... + .....+++.|+.+ ++||+-... .-+|+.++...........
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----------------P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----------------PIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----------------CcEEEEEecCCcccccccccCccc
Confidence 222111 0 1467899999964 788875421 1145555432211111000
Q ss_pred --C--ccccceEEEcCCCCEEEE-Eeccee-EEe--ecCCCCceeE------EeccCCCCCCceEECCCCCEEEEEe
Q 018705 188 --G--FYFANGIALSKNEDFVVV-CESWKR-YWL--KGDRAGILDA------FIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 188 --~--~~~~ngi~~~~dg~~lyv-~~~~~~-~~i--~~~~~~~~~~------~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
+ +.-..|+.+++..+.|+| ++..++ .-+ .+...+.... +....| .+.|+++|++|+|||...
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-qaEGiamDd~g~lYIvSE 302 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-QAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-CcceeEECCCCCEEEEec
Confidence 0 112345667654444444 555542 222 2211111111 111233 368899999999999854
No 84
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.02 E-value=0.0012 Score=65.33 Aligned_cols=193 Identities=15% Similarity=0.182 Sum_probs=118.1
Q ss_pred CCccccceEEcCCCCEEEEeCCCCeEEEcC-C-C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCccccccccccc
Q 018705 92 DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK 167 (351)
Q Consensus 92 ~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~ 167 (351)
++..+ |..|.|+.++.+.-+..+-+|++- + - ...+.....-+.++.+.|.|..|+|.+. .
T Consensus 451 ~GPVy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---------------D 514 (707)
T KOG0263|consen 451 SGPVY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---------------D 514 (707)
T ss_pred CCcee-eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---------------C
Confidence 35567 999999999888877777777773 2 2 3334444344667889999855544433 2
Q ss_pred CCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705 168 PYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 245 (351)
Q Consensus 168 ~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l 245 (351)
...+||..|- +.-.+.++..+.-.+++.|+|+.+++.-.+.++ |+|-.. +...+++|.. ..+....+++++.|+.
T Consensus 515 ~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF~G-H~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 515 QTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRIFTG-HKGPVTALAFSPCGRY 591 (707)
T ss_pred ceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEEecC-CCCceEEEEEcCCCce
Confidence 2457887764 344556666677788899999987443333333 788552 2345677763 4444567899999975
Q ss_pred EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC
Q 018705 246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG 324 (351)
Q Consensus 246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g 324 (351)
.++... .+.|..+|-.+|+.+..+-++.+ .+.++.+. +|
T Consensus 592 LaSg~e------------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~dg 631 (707)
T KOG0263|consen 592 LASGDE------------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRDG 631 (707)
T ss_pred Eeeccc------------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecCC
Confidence 554322 23455666656666665544433 35555543 44
Q ss_pred EEEEEecCCCeEEEEeCCC
Q 018705 325 NLYLASLQSNFIGILPLDG 343 (351)
Q Consensus 325 ~L~ig~~~~~~i~~~~~~~ 343 (351)
.+.+.....+.+..+++..
T Consensus 632 ~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 632 NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CEEEecCCCCeEEEEEchh
Confidence 5555444466666666543
No 85
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.01 E-value=0.0025 Score=56.44 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=112.4
Q ss_pred CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEc--CCC
Q 018705 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG 123 (351)
Q Consensus 48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~~g 123 (351)
.|.-..-.+..+- +++.+.+++.|.....||..+|+. +.|....+... +|.+.| +++.||.-.-....+++ +++
T Consensus 142 ~gHtgylScC~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 142 AGHTGYLSCCRFL-DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred cCccceeEEEEEc-CCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCc
Confidence 3333334455565 588999999999999999888754 55655567777 888888 88999987666666666 355
Q ss_pred --eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEeecC--ccccceEEEc
Q 018705 124 --VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLHEG--FYFANGIALS 198 (351)
Q Consensus 124 --~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~--~~~~ngi~~~ 198 (351)
++.+......+|.+.+-|+|.-+.|.+. ++....||... .++..+... ....+.++||
T Consensus 220 ~c~qtF~ghesDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 220 QCVQTFEGHESDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred ceeEeecccccccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 7778777788999999999987777654 34444555433 344444322 2346789999
Q ss_pred CCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC
Q 018705 199 KNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS 244 (351)
Q Consensus 199 ~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~ 244 (351)
..|+.||....+. ..|=. .+..+...+. +.......+...+||.
T Consensus 283 ~SGRlLfagy~d~~c~vWDt-lk~e~vg~L~-GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDT-LKGERVGVLA-GHENRVSCLGVSPDGM 328 (343)
T ss_pred ccccEEEeeecCCceeEeec-cccceEEEee-ccCCeeEEEEECCCCc
Confidence 9999666654433 44521 1222222222 2222234455666764
No 86
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.99 E-value=0.0085 Score=52.53 Aligned_cols=210 Identities=17% Similarity=0.149 Sum_probs=110.5
Q ss_pred CCEEEEEEcCCCeEEEEeec---CCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCC-CCCcccEEEccCCcEE
Q 018705 72 DGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPD-ASFTNDVIAASDGTLY 146 (351)
Q Consensus 72 ~g~I~~~d~~~g~~~~~~~~---~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~-~~~~n~l~~d~dG~ly 146 (351)
+|.|..+|+.+|+..--... ...+. ...+..++.+|+++..+.++.++. +|....... .........-.++.+|
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 57788899878865321111 11111 124546789999988888999995 882221111 1111111244566788
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCc----cccceEEEcCCCCEEEEEecceeEEeecCCCC
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGF----YFANGIALSKNEDFVVVCESWKRYWLKGDRAG 221 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~----~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~ 221 (351)
+.... +.|+.+|..+|+..... ... ..........+++.+|++...+.+..-+...|
T Consensus 81 v~~~~------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 81 VGTSD------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp EEETT------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred cccce------------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 87643 57999998888765432 111 11111222223556888775442222223334
Q ss_pred ceeEEec-cCCCCCC---------ceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEE
Q 018705 222 ILDAFIE-NLPGGPD---------NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV 291 (351)
Q Consensus 222 ~~~~~~~-~~~g~pd---------~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 291 (351)
+..-... ..+.... +-..-.+|.+|++... +.+
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------------------------g~~ 185 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD-------------------------------------GRV 185 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT-------------------------------------SSE
T ss_pred cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC-------------------------------------CeE
Confidence 4321111 1110000 1112234578887543 125
Q ss_pred EEEECCCCeEEEEEECCCCCcccceeE-EEEECCEEEEEecCCCeEEEEeCCCC
Q 018705 292 VKVDGNDGKIIRDFNDPDATYISFVTS-AAEFDGNLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 292 ~~~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~g~L~ig~~~~~~i~~~~~~~~ 344 (351)
+.+|.++|+.+ +..+.. .... ....++.||+++ ..+.+..+++.+-
T Consensus 186 ~~~d~~tg~~~--w~~~~~----~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 186 VAVDLATGEKL--WSKPIS----GIYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEETTTTEEE--EEECSS-----ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred EEEECCCCCEE--EEecCC----CccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 66788677754 222211 1233 445789999999 6899999998764
No 87
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0059 Score=59.06 Aligned_cols=154 Identities=11% Similarity=0.047 Sum_probs=84.8
Q ss_pred CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-E
Q 018705 73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-L 145 (351)
Q Consensus 73 g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-l 145 (351)
..|+.+|.++...+.+........ ..+++++|+ |..+... ..++..+. +| .+.+.........++++|||+ |
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 356666764333333333223345 788999996 3333222 23666664 55 555443222344688999995 5
Q ss_pred EEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCc
Q 018705 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGI 222 (351)
Q Consensus 146 y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~ 222 (351)
+++.... ..-.||.+|.++++.+.+..........+++|||+.++++.. .+ ++|.-+...+.
T Consensus 263 a~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 263 AFASSKD---------------GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred EEEEecC---------------CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5543220 112589999887777666544334556899999997777543 23 55543322222
Q ss_pred eeEEeccCCCCCCceEECCCCCEE
Q 018705 223 LDAFIENLPGGPDNINLAPDGSFW 246 (351)
Q Consensus 223 ~~~~~~~~~g~pd~i~~d~~G~lw 246 (351)
.+.. .. .+ .+..++++|+..
T Consensus 328 ~~~l-~~-~~--~~~~~SpDG~~i 347 (429)
T PRK01742 328 ASLV-GG-RG--YSAQISADGKTL 347 (429)
T ss_pred eEEe-cC-CC--CCccCCCCCCEE
Confidence 3332 11 12 345677888743
No 88
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.0035 Score=56.11 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=108.0
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEec
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIV 128 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~ 128 (351)
..+++.|++-+..|-+|..+|+|+.||..+-...+.....-+|...++..++|+..++.+..-.+..+ .+| .+.+.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 38899999777788899999999999986654432222234565489999999988877665444444 244 22221
Q ss_pred --CCC-------------------CCcccEEEcc----------CCcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705 129 --PDA-------------------SFTNDVIAAS----------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP 177 (351)
Q Consensus 129 --~~~-------------------~~~n~l~~d~----------dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 177 (351)
... ..|.=+.+++ +|.+=.+.+..-|. +.-.-++.|+..|.+..||.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd--r~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD--RRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc--CCCCEEEEecCcceEEEEec
Confidence 100 1222222221 11111111100010 01123556777889999998
Q ss_pred CCCeEEEee--cCccccceEEEcCCCCEEEEEecce---eEEeec----CCCCceeE---EeccCCCCC-CceEECCCCC
Q 018705 178 KLKETTVLH--EGFYFANGIALSKNEDFVVVCESWK---RYWLKG----DRAGILDA---FIENLPGGP-DNINLAPDGS 244 (351)
Q Consensus 178 ~~~~~~~~~--~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~----~~~~~~~~---~~~~~~g~p-d~i~~d~~G~ 244 (351)
.+-+...-. ........|.++..|+++.+..+++ .|.+.+ .+.+.++. +.+-..-.+ ...+++.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 765432211 1123445688999999888887777 355442 12233331 111000011 4578999997
Q ss_pred EEEEEe
Q 018705 245 FWIGLI 250 (351)
Q Consensus 245 lwva~~ 250 (351)
+.+|..
T Consensus 263 Yv~a~s 268 (405)
T KOG1273|consen 263 YVCAGS 268 (405)
T ss_pred EEEecc
Confidence 776654
No 89
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.91 E-value=0.011 Score=58.74 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=123.8
Q ss_pred CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC-eEEecCC--CCCcccEE
Q 018705 64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAIVPD--ASFTNDVI 138 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g-~~~l~~~--~~~~n~l~ 138 (351)
..|.++...|....+..-+-...+....+..+...++++..|. |-++-..-|-+.++. .. ..++..+ ....+.++
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 3344455555443443322222232333333332667766664 333333323333332 11 2222222 36789999
Q ss_pred EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEEEEecce--eEEe
Q 018705 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWK--RYWL 215 (351)
Q Consensus 139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i 215 (351)
.+|||.+.+|-.. +|.|-.||...|.-.+ +.+.-....++.|+..|+.++-+..++ |.|=
T Consensus 358 YSpDgq~iaTG~e-----------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 358 YSPDGQLIATGAE-----------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ECCCCcEEEeccC-----------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 9999998887654 6789999977665433 334445667899999999777777666 5441
Q ss_pred ecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEE
Q 018705 216 KGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD 295 (351)
Q Consensus 216 ~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 295 (351)
- .+....+.|....|-.-..++.|+.|.|-++..... =.+..++
T Consensus 421 l-kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~-----------------------------------F~IfvWS 464 (893)
T KOG0291|consen 421 L-KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS-----------------------------------FEIFVWS 464 (893)
T ss_pred e-cccceeeeecCCCceeeeEEEEcCCCCEEEeeccce-----------------------------------EEEEEEE
Confidence 1 123345556543333345678999999877754310 1356666
Q ss_pred CCCCeEEEEEECCCCCcccceeEEEE--ECCEEEEEecCCCeEEEEe
Q 018705 296 GNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILP 340 (351)
Q Consensus 296 ~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~ 340 (351)
-++|+.+..+.+++|. ++++.. ++.-|+-+++ ...|.+++
T Consensus 465 ~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SW-DkTVRiW~ 506 (893)
T KOG0291|consen 465 VQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSW-DKTVRIWD 506 (893)
T ss_pred eecCeeeehhcCCCCc----ceeeEEccccCeEEeccc-cceEEEEE
Confidence 6688888888777763 444443 3455666666 44455554
No 90
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.89 E-value=0.0003 Score=69.17 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCc--cc-----ccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcCCCC
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPT--DF-----YKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNED 202 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~--~~-----~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~dg~ 202 (351)
..|..|++|++|+|||.+........ .. ...+...... .++.+++.+++++.+... .....|++++||++
T Consensus 436 ~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~-~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~ 514 (524)
T PF05787_consen 436 ASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGN-NVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGR 514 (524)
T ss_pred CCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccc-eeeeccccccceeeeccCCCCcccccceECCCCC
Confidence 78999999999999998764322110 00 0001001111 156667888888776643 34567899999999
Q ss_pred EEEEE
Q 018705 203 FVVVC 207 (351)
Q Consensus 203 ~lyv~ 207 (351)
+||++
T Consensus 515 tlFvn 519 (524)
T PF05787_consen 515 TLFVN 519 (524)
T ss_pred EEEEE
Confidence 98885
No 91
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.89 E-value=0.00041 Score=59.59 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=80.1
Q ss_pred EEeeCCCeEEEEEc----------CCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCC-Ce--EEEc-CC
Q 018705 58 SVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEK-GL--LKVT-EE 122 (351)
Q Consensus 58 ~~d~~~g~lyv~~~----------~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~-gl--~~~~-~~ 122 (351)
-+|| +|++|.|+. .|.++++-+ .++++.+...-+-++ ||+.|.+. ..|+.|+.+ .+ +.++ ++
T Consensus 115 kvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 115 KVDP-DGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred ccCC-CCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCc
Confidence 3553 566777652 355555554 666665544445678 99999665 678887654 34 4444 45
Q ss_pred C-e---EEe---cC----CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCcc
Q 018705 123 G-V---EAI---VP----DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFY 190 (351)
Q Consensus 123 g-~---~~l---~~----~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~ 190 (351)
| + +.+ .. ....|.++++|.+|+||++... .++|+++||.||++-.- .-.-.
T Consensus 192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCC
Confidence 5 2 111 11 1168999999999999999865 57899999999875321 11112
Q ss_pred ccceEEEc-CCCCEEEEEec
Q 018705 191 FANGIALS-KNEDFVVVCES 209 (351)
Q Consensus 191 ~~ngi~~~-~dg~~lyv~~~ 209 (351)
.....||. ++-+.+|++..
T Consensus 255 qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ceEEEEecCCCccEEEEEeh
Confidence 23345553 33345666543
No 92
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.88 E-value=0.016 Score=51.46 Aligned_cols=202 Identities=12% Similarity=0.142 Sum_probs=108.9
Q ss_pred EecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCC---CeEEEc
Q 018705 45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEK---GLLKVT 120 (351)
Q Consensus 45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~---gl~~~~ 120 (351)
++..|.+..--++.|.++..++..++.||++..||.-+. |...+.-+..... ..|+.|.|+...+..-. .+|.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence 555666666678889877788889999999999997654 4444444555566 78888999888775433 244444
Q ss_pred -C--CC-e---EEecCCCCCcccEEEccCCcEEEEeCCCc----cCCc---------ccccc-------------ccccc
Q 018705 121 -E--EG-V---EAIVPDASFTNDVIAASDGTLYFTVASTK----YTPT---------DFYKD-------------MAEGK 167 (351)
Q Consensus 121 -~--~g-~---~~l~~~~~~~n~l~~d~dG~ly~t~~~~~----~~~~---------~~~~~-------------~~~~~ 167 (351)
+ +| . +.+.....+..+..+-+|+.|. |.++.. +.+. .+..+ ...+.
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il-T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL-TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCceE-ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 2 34 2 2232222333333333344332 111100 0000 00000 11122
Q ss_pred CCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEecc-CCCCCCceEECC
Q 018705 168 PYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIEN-LPGGPDNINLAP 241 (351)
Q Consensus 168 ~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~ 241 (351)
.+..-..||...+.. +.+...-.-.|.|.|.|+|. -+.+-+.. .|.+.. ..+..+|... .......+.++.
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRa--D~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRA--DQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecC--CcEEeeeccCcccCCceeEEEcc
Confidence 233445566544433 33344445678899999997 45544433 355542 1233444321 112235578999
Q ss_pred CCCEEEEEec
Q 018705 242 DGSFWIGLIK 251 (351)
Q Consensus 242 ~G~lwva~~~ 251 (351)
.|+|..+.+.
T Consensus 284 SGRlLfagy~ 293 (343)
T KOG0286|consen 284 SGRLLFAGYD 293 (343)
T ss_pred cccEEEeeec
Confidence 9998887654
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00079 Score=60.21 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=95.2
Q ss_pred CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee---------cCCccccceEEcCCCCEEEEeCCCCeEE
Q 018705 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---------IDSQSLLGLTTTKDGGVILCDNEKGLLK 118 (351)
Q Consensus 48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~---------~~~~p~~gl~~d~~G~L~v~d~~~gl~~ 118 (351)
-|+-..+|+-.|+|+++.|..++.||-|-.|+..+|+++.-.. ...... .|.|.+|.....+....|-++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEE
Confidence 3556789999999888888889999999999988887753211 112234 777877777776666667777
Q ss_pred EcC--CC--eEEecC-CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEE-eCCCCeE-EEeecCccc
Q 018705 119 VTE--EG--VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLKET-TVLHEGFYF 191 (351)
Q Consensus 119 ~~~--~g--~~~l~~-~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~~~-~~~~~~~~~ 191 (351)
+++ +| .+.+.. ....+..+.++.|+.-.++.+. ....|+ ..++|+. +.+-..-.+
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGHsSy 350 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGHSSY 350 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCcccc
Confidence 773 55 444421 1146677788888754444332 122222 2333432 222333467
Q ss_pred cceEEEcCCCCEEEEEecce--eEEe
Q 018705 192 ANGIALSKNEDFVVVCESWK--RYWL 215 (351)
Q Consensus 192 ~ngi~~~~dg~~lyv~~~~~--~~~i 215 (351)
.|-..+++||+.+.-+++++ ++|-
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWH 376 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEec
Confidence 88899999999777777776 7773
No 94
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.88 E-value=0.0041 Score=55.14 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=98.9
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe--ecCccccceEEEcCCCCEEEEEec
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
.+..++.+..+|.+|-++.. |+ ...|.++|+++|++... ...-.+..||++..| .||.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~--yG-------------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGL--YG-------------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECS--TT-------------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred ccCccEEecCCCEEEEeCCC--CC-------------cEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence 68889999999999999875 21 23699999999986432 234458889999865 4877655
Q ss_pred ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705 210 WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA 287 (351)
Q Consensus 210 ~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
.. .+..+-.+......|. .++-.-|++.|. .+||++.++
T Consensus 108 k~~~~f~yd~~tl~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS------------------------------------ 148 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFP--YPGEGWGLTSDG-KRLIMSDGS------------------------------------ 148 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE---SSS--EEEECS-SCEEEE-SS------------------------------------
T ss_pred cCCeEEEEccccceEEEEEe--cCCcceEEEcCC-CEEEEECCc------------------------------------
Confidence 44 2333322333333332 233345788763 479999765
Q ss_pred ceEEEEEECCCCeEEEEEEC-CCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705 288 GARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 343 (351)
Q Consensus 288 ~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~ 343 (351)
..+..+||++-+....+.. .+|.+...+..+...+|.+|.--+..+.|.+++..+
T Consensus 149 -~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 149 -SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp -SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred -cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 2578889855566666654 245667778888888999999999999999999654
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00044 Score=61.80 Aligned_cols=227 Identities=19% Similarity=0.256 Sum_probs=127.8
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeec-CCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEe
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI 127 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l 127 (351)
-.+|.|+++...+-.|..||+|-.|.-.+|. .++|... ..-.. .+.|.+|+.-....+....+|+. +.| .+.+
T Consensus 266 Vlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 266 VLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred eEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee-EEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 4578888777888888999988777665663 3344211 12234 78888888655555555677776 455 5555
Q ss_pred cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC---ccccceEEEcC-CCCE
Q 018705 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---FYFANGIALSK-NEDF 203 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~ngi~~~~-dg~~ 203 (351)
.....++|...+.+||.-.++.++ +|.|-.|+.++++....... -...|.+.+-| +-..
T Consensus 345 rGHsSyvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 345 RGHSSYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH 407 (508)
T ss_pred cCccccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce
Confidence 554578999999999988888776 56788888776553211111 11233444333 3234
Q ss_pred EEEEecce-eEEeecCCCCceeEEeccC-C-CCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcc
Q 018705 204 VVVCESWK-RYWLKGDRAGILDAFIENL-P-GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL 280 (351)
Q Consensus 204 lyv~~~~~-~~~i~~~~~~~~~~~~~~~-~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
+.|++..+ .|-++ -...-++.|..+. . |---+.+.++.|. |+=+.
T Consensus 408 ~iVCNrsntv~imn-~qGQvVrsfsSGkREgGdFi~~~lSpkGe-wiYci------------------------------ 455 (508)
T KOG0275|consen 408 FIVCNRSNTVYIMN-MQGQVVRSFSSGKREGGDFINAILSPKGE-WIYCI------------------------------ 455 (508)
T ss_pred EEEEcCCCeEEEEe-ccceEEeeeccCCccCCceEEEEecCCCc-EEEEE------------------------------
Confidence 55666555 33332 1111123333211 1 1111234556664 22211
Q ss_pred cCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEE
Q 018705 281 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGIL 339 (351)
Q Consensus 281 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~ 339 (351)
++.+.+++|+-..|+....+...+- .+.++..+..+=.+.++..+++.++
T Consensus 456 -----gED~vlYCF~~~sG~LE~tl~VhEk----dvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 456 -----GEDGVLYCFSVLSGKLERTLPVHEK----DVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred -----ccCcEEEEEEeecCceeeeeecccc----cccccccCcccchhhhhcccchhhh
Confidence 3345678887767777666655442 2344555555555667767766554
No 96
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.80 E-value=0.032 Score=53.26 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=101.8
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eE
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VE 125 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~ 125 (351)
-.++.++|++..+-....||+|+.+|.++|+.. .+. ...+..+ +|...||+.-+++-+...-.+++. +. ++
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 358899976555556678999999998888653 333 2234566 888888887666555555555552 22 33
Q ss_pred EecCCC---------CCccc--EEEccCCcE-EEEeCCCc--cCC------------cccccccccccCCceEEEEeCCC
Q 018705 126 AIVPDA---------SFTND--VIAASDGTL-YFTVASTK--YTP------------TDFYKDMAEGKPYGQLRKYDPKL 179 (351)
Q Consensus 126 ~l~~~~---------~~~n~--l~~d~dG~l-y~t~~~~~--~~~------------~~~~~~~~~~~~~g~l~~~d~~~ 179 (351)
++.-.. -..++ |.++-+|.| |+.-.... ..+ ......++.+.-+|.|..|+-.+
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 332110 11222 233334433 11111000 000 00001133445578899998777
Q ss_pred CeEEEeecC--ccccceEEEcCCCCEEEEEeccee---EEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705 180 KETTVLHEG--FYFANGIALSKNEDFVVVCESWKR---YWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 180 ~~~~~~~~~--~~~~ngi~~~~dg~~lyv~~~~~~---~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 249 (351)
|.-..+... -....+++.+..+. ++....+.. +.+.+......+.+ .+...|-+++..++|.+-+-.
T Consensus 352 g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 352 GTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred ccccccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccccccee--ecCCCceeEEEcCCCCEEEEE
Confidence 655444321 22356777777665 666665553 33332222222221 345578899999988644443
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.79 E-value=0.0029 Score=54.92 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=93.3
Q ss_pred EEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC---eEEecCCCCC
Q 018705 57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VEAIVPDASF 133 (351)
Q Consensus 57 i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g---~~~l~~~~~~ 133 (351)
+.|-..+..+..+..++.|..||..+|+...-......+. .+-+.++|++.....+.++.-.+++. ++.+..+ ..
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~n 226 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CN 226 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc-cc
Confidence 3444345566666778889999998886654444555666 89999999988776665555545433 3333222 45
Q ss_pred cccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-c-CccccceEEEcCCCCEEEEEec-c
Q 018705 134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-E-GFYFANGIALSKNEDFVVVCES-W 210 (351)
Q Consensus 134 ~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~-~~~~~ngi~~~~dg~~lyv~~~-~ 210 (351)
+++..+.|+-.+|++-.. +..+++||-.||+-.... . ...-..++.|+|||. +|-+-+ +
T Consensus 227 V~SASL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED 288 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED 288 (334)
T ss_pred cccccccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence 666677888888887654 457999998887644332 2 233456899999997 777443 3
Q ss_pred e--eEEeec
Q 018705 211 K--RYWLKG 217 (351)
Q Consensus 211 ~--~~~i~~ 217 (351)
+ |+|...
T Consensus 289 GTirlWQt~ 297 (334)
T KOG0278|consen 289 GTIRLWQTT 297 (334)
T ss_pred ceEEEEEec
Confidence 3 888764
No 98
>PTZ00421 coronin; Provisional
Probab=97.77 E-value=0.049 Score=53.54 Aligned_cols=101 Identities=7% Similarity=0.011 Sum_probs=65.3
Q ss_pred CccccceEEcC-CCCEEEEeCCCCeEEEc--CCC-e--------EEecCCCCCcccEEEccCC-cEEEEeCCCccCCccc
Q 018705 93 SQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG-V--------EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDF 159 (351)
Q Consensus 93 ~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~~g-~--------~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~ 159 (351)
+... ++++++ +++++++....+.++++ +++ . ..+......+..+++.|++ ++.++.+.
T Consensus 76 ~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~-------- 146 (493)
T PTZ00421 76 GPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA-------- 146 (493)
T ss_pred CCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC--------
Confidence 4456 899998 77776666666777766 222 1 2222222567889999875 56666543
Q ss_pred ccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEEEecce
Q 018705 160 YKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 160 ~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
++.|..||..+++...... .....++++++++|+.+..+..++
T Consensus 147 ---------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 147 ---------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred ---------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence 4678899987776543332 233467899999998666665555
No 99
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.75 E-value=0.00046 Score=64.33 Aligned_cols=148 Identities=14% Similarity=0.230 Sum_probs=83.5
Q ss_pred CccccceEEcCCCCEEEEeCCCCeEEEcCCC-e-EEecC--C-----CCCcccEEEccC----CcEEEEeCCCccCCccc
Q 018705 93 SQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-V-EAIVP--D-----ASFTNDVIAASD----GTLYFTVASTKYTPTDF 159 (351)
Q Consensus 93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g-~-~~l~~--~-----~~~~n~l~~d~d----G~ly~t~~~~~~~~~~~ 159 (351)
.+|. +|++.++|++||++..+.++.+.++| . ..+.. . ....-+++++|+ +.||+..+.....
T Consensus 2 ~~P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~---- 76 (331)
T PF07995_consen 2 NNPR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED---- 76 (331)
T ss_dssp SSEE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS----
T ss_pred CCce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC----
Confidence 3578 99999999999999866677777666 4 33322 1 167788999994 8899876531000
Q ss_pred ccccccccCCceEEEEeCCCC--e---EEEeec-------CccccceEEEcCCCCEEEEEecce---------------e
Q 018705 160 YKDMAEGKPYGQLRKYDPKLK--E---TTVLHE-------GFYFANGIALSKNEDFVVVCESWK---------------R 212 (351)
Q Consensus 160 ~~~~~~~~~~g~l~~~d~~~~--~---~~~~~~-------~~~~~ngi~~~~dg~~lyv~~~~~---------------~ 212 (351)
......+|.++..+.+ . .+.+.. ......+|+|+||| .||++--.. .
T Consensus 77 -----~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 77 -----GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp -----SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred -----CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence 0011235666643322 1 222221 23445679999999 599964322 2
Q ss_pred EEeecC-C-----------CCceeEEeccCCCCCCceEECCC-CCEEEEEecC
Q 018705 213 YWLKGD-R-----------AGILDAFIENLPGGPDNINLAPD-GSFWIGLIKM 252 (351)
Q Consensus 213 ~~i~~~-~-----------~~~~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~ 252 (351)
+.+... + ....++++.++. .|-++++|+. |+||++....
T Consensus 151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp EEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-S
T ss_pred EEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCC
Confidence 333310 0 012355554433 2667899999 9999998543
No 100
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.74 E-value=0.034 Score=50.81 Aligned_cols=148 Identities=9% Similarity=0.034 Sum_probs=89.7
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC-e-EEecCC
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-V-EAIVPD 130 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-~-~~l~~~ 130 (351)
+++.+|....+-+|..|..-+.|+..+|.+- .......... .+.|..+|.+.++..-.|.+++.+ +| . -.+...
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e 147 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE 147 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEeecc
Confidence 5566664445556777888888888777642 2222334455 888999998887765567777773 44 2 222222
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLHEGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
...+.-+...|.+.+.++-+. +|.+|+|.-.. +..+++...-...+.=.|.|||+++.....
T Consensus 148 ~~dieWl~WHp~a~illAG~~-----------------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGST-----------------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred cCceEEEEecccccEEEeecC-----------------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 234444566677766665443 68899997554 444444433222333467899998888777
Q ss_pred ce--eEEeecCCCCce
Q 018705 210 WK--RYWLKGDRAGIL 223 (351)
Q Consensus 210 ~~--~~~i~~~~~~~~ 223 (351)
++ +.| +++.++.
T Consensus 211 dgti~~W--n~ktg~p 224 (399)
T KOG0296|consen 211 DGTIIVW--NPKTGQP 224 (399)
T ss_pred CceEEEE--ecCCCce
Confidence 66 555 3444544
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.71 E-value=0.074 Score=55.69 Aligned_cols=140 Identities=11% Similarity=-0.012 Sum_probs=85.7
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCC----eEE----EEeecCCccccceEEcCC-CCEEEEeCCCCeEEEcC--C
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNE----TLV----NWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVTE--E 122 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g----~~~----~~~~~~~~p~~gl~~d~~-G~L~v~d~~~gl~~~~~--~ 122 (351)
-.+++|++++..+.++..++.|..|+..+. ... .......... ++++++. +...++....+.++++. +
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 357899977777888899999999986321 110 0011122344 7777753 55655555667777763 4
Q ss_pred C--eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEc-
Q 018705 123 G--VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS- 198 (351)
Q Consensus 123 g--~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~- 198 (351)
+ ...+......+.++++++ +|.++++.+. ++.|..||..+++.............+.++
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICCVQFPS 627 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence 4 444433336788999986 6777777654 567888887765543222222344566774
Q ss_pred CCCCEEEEEecce
Q 018705 199 KNEDFVVVCESWK 211 (351)
Q Consensus 199 ~dg~~lyv~~~~~ 211 (351)
++++.+.++..++
T Consensus 628 ~~g~~latgs~dg 640 (793)
T PLN00181 628 ESGRSLAFGSADH 640 (793)
T ss_pred CCCCEEEEEeCCC
Confidence 5677666666555
No 102
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.028 Score=49.32 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=46.1
Q ss_pred EEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEcC-CC
Q 018705 58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG 123 (351)
Q Consensus 58 ~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~-~g 123 (351)
..|+++|.+|++++|+..+.+|+.+..-..-.+.++....+-++++ ++.||++...+.++++++ ++
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 4566789999999999999999865543222222222211455665 889999998888888885 55
No 103
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.68 E-value=0.1 Score=54.72 Aligned_cols=176 Identities=11% Similarity=0.109 Sum_probs=100.9
Q ss_pred CceEEEeeC-CCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEcC--CC--eEE
Q 018705 54 PEDVSVVVS-KGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE--EG--VEA 126 (351)
Q Consensus 54 pe~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~--~g--~~~ 126 (351)
..++++.+. +..+.++..+|.|..||..+++. ..+........ ++++++ ++.++++....+.++++. ++ ...
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 356777753 45677888899999999876654 33333334456 899985 778777766677777773 44 333
Q ss_pred ecCCCCCcccEEEc-cCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--EEeecCccccceEEEcCCCCE
Q 018705 127 IVPDASFTNDVIAA-SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF 203 (351)
Q Consensus 127 l~~~~~~~n~l~~d-~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~ngi~~~~dg~~ 203 (351)
+... ..+..+.+. ++|..+++.+. +|.|..||..+++. ..+.........+.+. ++..
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~ 674 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST 674 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence 3322 345566664 45766665543 57899998765432 2222222334567776 5665
Q ss_pred EEEEecce--eEEeecCC-----CCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705 204 VVVCESWK--RYWLKGDR-----AGILDAFIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 204 lyv~~~~~--~~~i~~~~-----~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
++.+..++ ++|--... ......+. ........+.++++|.+.++..
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence 66666555 56632110 01112222 1122234467888887665543
No 104
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.66 E-value=0.00016 Score=53.19 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=40.0
Q ss_pred ceEEcCC-CCEEEEeCC------------------CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCC
Q 018705 98 GLTTTKD-GGVILCDNE------------------KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVAS 151 (351)
Q Consensus 98 gl~~d~~-G~L~v~d~~------------------~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~ 151 (351)
+++++++ |.+|+++.. ++++++++ ++ .+++.++..+||+|++++|+. +.|+++.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 6778877 888888753 25889997 66 788888889999999999995 7888865
No 105
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.65 E-value=0.0063 Score=60.01 Aligned_cols=168 Identities=16% Similarity=0.229 Sum_probs=89.8
Q ss_pred ccCceEecCCCcCCCceEEE---eeCCCeEEEEEc--CCEEEEEEcCCCeEEEE-------eecCCccccceEEcCCCCE
Q 018705 40 MKGLTKLGEGCVNHPEDVSV---VVSKGALYTATR--DGWVKYFILHNETLVNW-------KHIDSQSLLGLTTTKDGGV 107 (351)
Q Consensus 40 l~~~~~i~~~~~~~pe~i~~---d~~~g~lyv~~~--~g~I~~~d~~~g~~~~~-------~~~~~~p~~gl~~d~~G~L 107 (351)
-....+-+.|. ..-|.+++ ++....+|.+.. ++.|||+-++ ...... ....+..+ ...+..+|.+
T Consensus 233 ~~p~K~tAlGR-f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~-~~~~~~~~~~~~~ll~~GtLy-aak~~~~g~~ 309 (524)
T PF05787_consen 233 STPVKRTALGR-FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSD-KPWDPGDRAANRDLLDEGTLY-AAKFNQDGTG 309 (524)
T ss_pred CCccceeeccc-ccccceeEEeecCCeEEEEEEecCCCCeEEEEecC-CCCCCcccchhhhhhhCCEec-eEEECCCCcE
Confidence 33445566774 56799999 755667888653 5678888652 222100 01223344 4444444433
Q ss_pred -EEEeCCC--CeEEEc--CC-C-e----EEe-----cCCCCCcccEEEccC-CcEEEEeCCCccC-Ccc-cccccccccC
Q 018705 108 -ILCDNEK--GLLKVT--EE-G-V----EAI-----VPDASFTNDVIAASD-GTLYFTVASTKYT-PTD-FYKDMAEGKP 168 (351)
Q Consensus 108 -~v~d~~~--gl~~~~--~~-g-~----~~l-----~~~~~~~n~l~~d~d-G~ly~t~~~~~~~-~~~-~~~~~~~~~~ 168 (351)
||--... .+.... .+ . + +.- +....+|.++.+++. |.+||+.+...-. ... ..........
T Consensus 310 ~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~ 389 (524)
T PF05787_consen 310 EWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNG 389 (524)
T ss_pred EEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCc
Confidence 4322111 011000 00 0 0 000 111278999999995 7999987642100 000 0011112345
Q ss_pred CceEEEEeCCCC-------eEEEee------------------cCccccceEEEcCCCCEEEEEecce
Q 018705 169 YGQLRKYDPKLK-------ETTVLH------------------EGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 169 ~g~l~~~d~~~~-------~~~~~~------------------~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
.|.|++|++..+ +.+.+. ..+.+|++|+++++|+ |||++-..
T Consensus 390 ~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~ 456 (524)
T PF05787_consen 390 YGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGG 456 (524)
T ss_pred ccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCC
Confidence 688999998755 333322 1256899999999998 89877554
No 106
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.62 E-value=0.002 Score=58.91 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=106.2
Q ss_pred ceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceE-----------EcCCC-----
Q 018705 43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLT-----------TTKDG----- 105 (351)
Q Consensus 43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~-----------~d~~G----- 105 (351)
..+...|.-..-.++.+. .+|.+|.++.|+.|-.|+..+|+.- .+.......+ .|+ ||+.|
T Consensus 239 ~~~~lsgHT~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEEeccCccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCC
Confidence 444555655566788887 6899999999999999998777542 1111111111 111 22222
Q ss_pred --------------------CEEEEeCCCCeEEEc-CCC----eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccc
Q 018705 106 --------------------GVILCDNEKGLLKVT-EEG----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160 (351)
Q Consensus 106 --------------------~L~v~d~~~gl~~~~-~~g----~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~ 160 (351)
+-.|.......+.++ +.. ++.......-+|.+.++|||+...+.+-
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF--------- 387 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF--------- 387 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec---------
Confidence 223333333333333 311 2223233367999999999976665543
Q ss_pred cccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCc
Q 018705 161 KDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDN 236 (351)
Q Consensus 161 ~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~ 236 (351)
+..|-.|+..+|+.-.... ......-|+++.|.+ |.|+.+.. +.|-.. .+.+..++||..|.
T Consensus 388 --------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~-----tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 388 --------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR-----TKKLKQDLPGHADE 453 (480)
T ss_pred --------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEee-----eeeecccCCCCCce
Confidence 3468888888887533222 334566799999987 66755443 455221 12233368888887
Q ss_pred eE---ECCCCCEEEEEec
Q 018705 237 IN---LAPDGSFWIGLIK 251 (351)
Q Consensus 237 i~---~d~~G~lwva~~~ 251 (351)
+. ..+||..-++...
T Consensus 454 Vf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGK 471 (480)
T ss_pred EEEEEecCCCceeecCCC
Confidence 63 4588877666543
No 107
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.61 E-value=0.051 Score=49.35 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=125.2
Q ss_pred EEEEEEcCCCeEEEE-eecCCccccc-eEEcCCCCE-EEEeC----CCCeEEEc-CC-C---eEEecCCCCCcccEEEcc
Q 018705 74 WVKYFILHNETLVNW-KHIDSQSLLG-LTTTKDGGV-ILCDN----EKGLLKVT-EE-G---VEAIVPDASFTNDVIAAS 141 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~-~~~~~~p~~g-l~~d~~G~L-~v~d~----~~gl~~~~-~~-g---~~~l~~~~~~~n~l~~d~ 141 (351)
..+.+|+.+|+.... ....++-..| -+|++||++ |.+.+ +.|++-+. .. + +..+...--.|-++.+.+
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 466778877765433 2333333113 467899965 55432 24555555 33 4 233444336799999999
Q ss_pred CC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee---cC--ccccceEEEcCCCCEEEEEecce----
Q 018705 142 DG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EG--FYFANGIALSKNEDFVVVCESWK---- 211 (351)
Q Consensus 142 dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~--~~~~ngi~~~~dg~~lyv~~~~~---- 211 (351)
|| +|.|++.+-......-...+.-.+-...|.++|..+|++.... .. .....-++++++|. ++++.-..
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPG 187 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCC
Confidence 99 8999886411110000011111122346888988888764321 11 12455789999997 77765333
Q ss_pred ----eEEeecCCCCceeEEe------ccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhccc
Q 018705 212 ----RYWLKGDRAGILDAFI------ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL 281 (351)
Q Consensus 212 ----~~~i~~~~~~~~~~~~------~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (351)
.+.+... .+..+.+. ..+.+|.-.|+++++|.++..+...
T Consensus 188 ~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr----------------------------- 237 (305)
T PF07433_consen 188 DAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR----------------------------- 237 (305)
T ss_pred ccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-----------------------------
Confidence 1111111 01112111 0244566678999999866654421
Q ss_pred CCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCCC
Q 018705 282 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE 345 (351)
Q Consensus 282 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~~ 345 (351)
-+.+..+|.++|+.+....-++ .+.+...++. |+.+...+.+.+.......
T Consensus 238 ------Gg~~~~~d~~tg~~~~~~~l~D------~cGva~~~~~-f~~ssG~G~~~~~~~~~~~ 288 (305)
T PF07433_consen 238 ------GGRVAVWDAATGRLLGSVPLPD------ACGVAPTDDG-FLVSSGQGQLIRLSPDGPQ 288 (305)
T ss_pred ------CCEEEEEECCCCCEeeccccCc------eeeeeecCCc-eEEeCCCccEEEccCcccc
Confidence 2467888777899887665444 4556554444 4445556667666644443
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.05 Score=48.89 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=97.5
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCC---CEEEEeCCCCeEEEcCCC-eEE---
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDG---GVILCDNEKGLLKVTEEG-VEA--- 126 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G---~L~v~d~~~gl~~~~~~g-~~~--- 126 (351)
.++|++ +..+-.|..|-.|..||....+ ........+..+ .+.|++.- .|.-+. ..|.+.++..| .+.
T Consensus 47 tavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~~s 122 (362)
T KOG0294|consen 47 TALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELLKS 122 (362)
T ss_pred eEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEeee
Confidence 366764 4445556778899999974432 223344456666 78887543 565554 44666666544 333
Q ss_pred ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEE
Q 018705 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv 206 (351)
+......+++|++.|.|.|-++... ++.+..||.-+|+...+..--..+.-|.++|.|...++
T Consensus 123 lK~H~~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 123 LKAHKGQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred ecccccccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 3222356999999999999888765 23455555555544333332234555889999986666
Q ss_pred Eecce--eEEeecCCCCceeEEec-cCCCCCCceEECCCCCEEEEE
Q 018705 207 CESWK--RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 207 ~~~~~--~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~ 249 (351)
.-.+. .|.+.+. .+|.. ..+-.+-.+.++..+.|.+|.
T Consensus 186 ~~~~~i~i~q~d~A-----~v~~~i~~~~r~l~~~~l~~~~L~vG~ 226 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNA-----SVFREIENPKRILCATFLDGSELLVGG 226 (362)
T ss_pred EeccEEEEEecccH-----hHhhhhhccccceeeeecCCceEEEec
Confidence 65444 3333321 11111 111123455666667777774
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.53 E-value=0.0066 Score=60.73 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=97.3
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC---
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--- 123 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--- 123 (351)
....+++++.-++-.++|...|.|-+++.+.|..+ .|. ...+... |++.|.-+++.|+....|++.++. .+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCcce
Confidence 34567888877778899999999999999888543 231 1223345 999999999999988889988873 22
Q ss_pred eEEecC---------------------C--------------------CCCcccEEEccCCcEEEEeCCCccCCcccccc
Q 018705 124 VEAIVP---------------------D--------------------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKD 162 (351)
Q Consensus 124 ~~~l~~---------------------~--------------------~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~ 162 (351)
+..+.. . .+.++++++++||+=.++.+.
T Consensus 528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm----------- 596 (910)
T KOG1539|consen 528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM----------- 596 (910)
T ss_pred eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec-----------
Confidence 111100 0 067888888888875555443
Q ss_pred cccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEee
Q 018705 163 MAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLK 216 (351)
Q Consensus 163 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~ 216 (351)
++.|..||..++...-...--.-+-.+.++|+|++|-.+..+. .+|.+
T Consensus 597 ------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 597 ------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 4578888876665422111112344688999999777666554 55644
No 110
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.51 E-value=0.006 Score=57.46 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=91.4
Q ss_pred eEEEEEcCC-EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEc-CCC-eEEecCC-CCCcccEEE
Q 018705 65 ALYTATRDG-WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEAIVPD-ASFTNDVIA 139 (351)
Q Consensus 65 ~lyv~~~~g-~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~-~~g-~~~l~~~-~~~~n~l~~ 139 (351)
.+.+|+.+| .+..+|..+++++++...-++.. .+.++++|. +.+++....++.++ .+| ++.+-.. ...+.++++
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~ 451 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW 451 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence 455677777 78888988888888888778888 899999997 66777666788888 477 6655333 367888889
Q ss_pred ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 140 d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
+++++.+ +-.- - ++--...+-.||..++++-.+...-.+-..-+|+||++.||+-+...
T Consensus 452 ~~nsr~i-AYaf---P---------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 452 HPNSRWI-AYAF---P---------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cCCceeE-EEec---C---------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 9988643 2210 0 00012357788888777655554444444458999999999965443
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.51 E-value=0.055 Score=50.57 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=106.4
Q ss_pred cccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705 95 SLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (351)
Q Consensus 95 p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~ 168 (351)
|.+++...+.|..++.....+.+.+. .+| .....+. .....+.++.|||.|+.+-..
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----------------- 367 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----------------- 367 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC-----------------
Confidence 33388888999887777777777776 366 3333332 134667889999988876544
Q ss_pred CceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705 169 YGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 245 (351)
Q Consensus 169 ~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l 245 (351)
+|.|-.||.+.+.. ..+...-.-...|+|+.+|-+|.++..+. ++|=- .+......+.....--...+.+|..|.+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL-RKl~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL-RKLKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe-hhhcccceeeccccccceeEEEcCCCCe
Confidence 56677777765432 11111112234688999986665544444 45511 1222333332111001345789999986
Q ss_pred EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC--eEEEEEECCCCCcccceeEEEEEC
Q 018705 246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG--KIIRDFNDPDATYISFVTSAAEFD 323 (351)
Q Consensus 246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~g~~~~~~~~~~~~~ 323 (351)
.+..+. .-.|+.++..+. +.+..+++..| ..+.+-+.+
T Consensus 447 L~~~g~------------------------------------~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~ 486 (506)
T KOG0289|consen 447 LGIAGS------------------------------------DLQVYICKKKTKSWTEIKELADHSG----LSTGVRFGE 486 (506)
T ss_pred EEeecc------------------------------------eeEEEEEecccccceeeehhhhccc----ccceeeecc
Confidence 665432 125777765222 34555555444 244555666
Q ss_pred CEEEEEecCCCeEEEE
Q 018705 324 GNLYLASLQSNFIGIL 339 (351)
Q Consensus 324 g~L~ig~~~~~~i~~~ 339 (351)
..-|+++...+++.++
T Consensus 487 ~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRL 502 (506)
T ss_pred cceEEeeccchhheEE
Confidence 6777777777777554
No 112
>PRK13684 Ycf48-like protein; Provisional
Probab=97.50 E-value=0.085 Score=49.23 Aligned_cols=185 Identities=13% Similarity=0.115 Sum_probs=90.5
Q ss_pred ccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCc
Q 018705 94 QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG 170 (351)
Q Consensus 94 ~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g 170 (351)
.++ .+....++.+|++.....+++-...| .+.+... ....+++.++++|.+++... .|
T Consensus 133 ~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~------------------~G 193 (334)
T PRK13684 133 SPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS------------------RG 193 (334)
T ss_pred Cce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC------------------Cc
Confidence 445 44443445566665544455544444 3433332 24567778888775554433 24
Q ss_pred eEEEE-eCCCCeEEEeec-CccccceEEEcCCCCEEEEEecceeEEeecCCCCc-eeEEeccCCC-----CCCceEECCC
Q 018705 171 QLRKY-DPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGI-LDAFIENLPG-----GPDNINLAPD 242 (351)
Q Consensus 171 ~l~~~-d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~-~~~~~~~~~g-----~pd~i~~d~~ 242 (351)
.+++- +......+.+.. .....+++++.+++. +|+....+.+.+.....|. .+... .|. ....+.+.++
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~G~~~~~s~d~G~sW~~~~--~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARGGQIRFNDPDDLESWSKPI--IPEITNGYGYLDLAYRTP 270 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecCCEEEEccCCCCCcccccc--CCccccccceeeEEEcCC
Confidence 55554 222223433322 224567888888887 5554434433221111122 12111 110 1134566778
Q ss_pred CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEE-E
Q 018705 243 GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-E 321 (351)
Q Consensus 243 G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~ 321 (351)
+++|++... +.+++=.. .|+.-.....+.+.. .....+. .
T Consensus 271 ~~~~~~G~~-------------------------------------G~v~~S~d-~G~tW~~~~~~~~~~-~~~~~~~~~ 311 (334)
T PRK13684 271 GEIWAGGGN-------------------------------------GTLLVSKD-GGKTWEKDPVGEEVP-SNFYKIVFL 311 (334)
T ss_pred CCEEEEcCC-------------------------------------CeEEEeCC-CCCCCeECCcCCCCC-cceEEEEEe
Confidence 889987432 33443333 455444433223322 2344444 4
Q ss_pred ECCEEEEEecCCCeEEEEe
Q 018705 322 FDGNLYLASLQSNFIGILP 340 (351)
Q Consensus 322 ~~g~L~ig~~~~~~i~~~~ 340 (351)
++++.|+... .+-|.+++
T Consensus 312 ~~~~~~~~G~-~G~il~~~ 329 (334)
T PRK13684 312 DPEKGFVLGQ-RGVLLRYV 329 (334)
T ss_pred CCCceEEECC-CceEEEec
Confidence 5678888765 56676665
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.48 E-value=0.071 Score=50.83 Aligned_cols=169 Identities=12% Similarity=0.143 Sum_probs=91.3
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEcCCCe-----EEec
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGV-----EAIV 128 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g~-----~~l~ 128 (351)
-+++|. .+|.+.++..+|.|..|++.+.+...-. ...+-.. +|..-++|.|.-+. ..+.+..+.+.. ..++
T Consensus 250 l~v~F~-engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGg-KDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 250 LCVTFL-ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGG-KDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEEc-CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecC-ccceEEeccccccccccccCc
Confidence 478888 6788889999999999998555543222 2234455 78888999888633 333333332221 1123
Q ss_pred CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe
Q 018705 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~ 208 (351)
+....+.-|+....+ ||+.++. +.|.+=+..++....+......--|++.+|+.+ +|++.
T Consensus 327 e~~G~iRtv~e~~~d-i~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~ 386 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGD-ILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTC 386 (626)
T ss_pred hhcCCeeEEecCCCc-EEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeec
Confidence 333566666654433 8888764 123222222222222222233456888998887 55644
Q ss_pred c-ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 209 S-WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 209 ~-~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
. .+ ++|-+ .+. ......+. | .....+++.|.+-+++..
T Consensus 387 gqdk~v~lW~~-~k~-~wt~~~~d-~--~~~~~fhpsg~va~Gt~~ 427 (626)
T KOG2106|consen 387 GQDKHVRLWND-HKL-EWTKIIED-P--AECADFHPSGVVAVGTAT 427 (626)
T ss_pred cCcceEEEccC-Cce-eEEEEecC-c--eeEeeccCcceEEEeecc
Confidence 3 33 77742 211 12222211 1 234567788866666544
No 114
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.48 E-value=0.0032 Score=57.70 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=100.9
Q ss_pred CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecCCCCCcccEEE
Q 018705 64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVPDASFTNDVIA 139 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~~~~~~n~l~~ 139 (351)
+++-.++.||.|..||...++..........|.+.+....+|-+|-+. ..+.+++++ +| .+.+......+|.|+.
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS-~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS-QDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC-CCceEEEEEccchhHHHhhcccchheeeeec
Confidence 445556679999999985554433222222343377777788777665 446677763 67 6666665577888877
Q ss_pred ccCCcEEEE---eCCCc--------------cCC--cccccccccccCCceEEEEeCCCCe--EEEeecCccccceEEEc
Q 018705 140 ASDGTLYFT---VASTK--------------YTP--TDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALS 198 (351)
Q Consensus 140 d~dG~ly~t---~~~~~--------------~~~--~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~ngi~~~ 198 (351)
+.|=-+=.. ....+ |+. ......+..+..+..++.|+|...+ ++.........|.+.||
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS 376 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence 643111000 00000 000 0001224445566789999886321 12233344568899999
Q ss_pred CCCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 199 KNEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 199 ~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
||++++--++.++ ++|-. ..|+. ..|. +.-+...-++..+|.+|.|+...
T Consensus 377 Pd~r~IASaSFDkSVkLW~g--~tGk~lasfR-GHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDG--RTGKFLASFR-GHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred CCccEEEEeecccceeeeeC--CCcchhhhhh-hccceeEEEEeccCccEEEEcCC
Confidence 9996443455555 77733 23332 1121 11112234678889999998764
No 115
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.47 E-value=0.035 Score=49.99 Aligned_cols=217 Identities=14% Similarity=0.179 Sum_probs=118.9
Q ss_pred CccccceEEcCCCCEEEEeCCCCeEEEcC-C-----C-eE----EecC--C---CCCcccEEEccCCcEEEEeCCCccCC
Q 018705 93 SQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-----G-VE----AIVP--D---ASFTNDVIAASDGTLYFTVASTKYTP 156 (351)
Q Consensus 93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-----g-~~----~l~~--~---~~~~n~l~~d~dG~ly~t~~~~~~~~ 156 (351)
.+|. ||++.+.|-+||++.+.+...+.. + | .. .+.. . ...|.++++.....+-++... +-..
T Consensus 23 ~N~W-Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g-~~~~ 100 (336)
T TIGR03118 23 RNAW-GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG-ITGP 100 (336)
T ss_pred cccc-eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC-cccc
Confidence 4678 999999999999998877554432 2 3 11 1111 1 145667766644333333321 0000
Q ss_pred cccccccccccCCceEEEEeCCCCeE------EEeecC--ccccceEEEcCC--CCEEEEEecce-eEEeecCCCCcee-
Q 018705 157 TDFYKDMAEGKPYGQLRKYDPKLKET------TVLHEG--FYFANGIALSKN--EDFVVVCESWK-RYWLKGDRAGILD- 224 (351)
Q Consensus 157 ~~~~~~~~~~~~~g~l~~~d~~~~~~------~~~~~~--~~~~ngi~~~~d--g~~lyv~~~~~-~~~i~~~~~~~~~- 224 (351)
-..+..+.+|.|.-|.|.-+.. .++... ...=.|+|+... +++||.++..+ ++.+-+.......
T Consensus 101 ----a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 101 ----SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred ----eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 0011223356677776543222 111111 111136676643 56899999877 7877653332211
Q ss_pred --EEecc-CCC--CCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC
Q 018705 225 --AFIEN-LPG--GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG 299 (351)
Q Consensus 225 --~~~~~-~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g 299 (351)
-|.+. +|. -|-||.- -.|+|||+-........+ .+.+...+-|-+||+ +|
T Consensus 177 ~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d-----------------------~v~G~G~G~VdvFd~-~G 231 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRND-----------------------EVAGAGLGYVNVFTL-NG 231 (336)
T ss_pred CCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccc-----------------------cccCCCcceEEEEcC-CC
Confidence 13331 221 3556643 357899986542111000 012345578999999 99
Q ss_pred eEEEEEECCCCCcccceeEEEE-------ECCEEEEEecCCCeEEEEeCC
Q 018705 300 KIIRDFNDPDATYISFVTSAAE-------FDGNLYLASLQSNFIGILPLD 342 (351)
Q Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~-------~~g~L~ig~~~~~~i~~~~~~ 342 (351)
+.++++.+.. .++..=.+.. ..|.|.||.+...+|-.||..
T Consensus 232 ~l~~r~as~g--~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 232 QLLRRVASSG--RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred cEEEEeccCC--cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence 9999986422 1222223321 258999999999999999965
No 116
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.44 E-value=0.031 Score=52.33 Aligned_cols=152 Identities=16% Similarity=0.241 Sum_probs=78.0
Q ss_pred eEEEEEcC--CEEEEEEcCCCeEEEEeecCC-ccccceEEcCCCC-EEEEeCCCCeEEEcC-CC-eEEec-CCCCCc-c-
Q 018705 65 ALYTATRD--GWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAIV-PDASFT-N- 135 (351)
Q Consensus 65 ~lyv~~~~--g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g-~~~l~-~~~~~~-n- 135 (351)
.||.+..+ .+++.+|.++++.+......+ ... |..+.++++ +|.......+++++- +. .+.+. ....+. +
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~g 128 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYG 128 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEE
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccccc
Confidence 45666554 469999999998887765433 334 666666664 444444567999984 44 33332 111111 1
Q ss_pred cEEEccCCcEEEEeCCCc--cCC---cccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC-EEEEEec
Q 018705 136 DVIAASDGTLYFTVASTK--YTP---TDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED-FVVVCES 209 (351)
Q Consensus 136 ~l~~d~dG~ly~t~~~~~--~~~---~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~-~lyv~~~ 209 (351)
...++.|++.++.....+ +.. .....+.++..+..+|+.+|.++|+.+.+...-..-+-+.++|... .|-+|..
T Consensus 129 t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 129 TWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred ceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEecc
Confidence 223456777665543111 110 1122356677778899999999999988876655566777887443 4445554
Q ss_pred ce------eEEeec
Q 018705 210 WK------RYWLKG 217 (351)
Q Consensus 210 ~~------~~~i~~ 217 (351)
+. |+|+-+
T Consensus 209 Gpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 209 GPWDLVDQRIWTIN 222 (386)
T ss_dssp S-TTTSS-SEEEEE
T ss_pred CCcceeceEEEEEE
Confidence 43 899864
No 117
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.42 E-value=0.022 Score=49.58 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=100.7
Q ss_pred EEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC----eEEecCCCCCcccEEEcc
Q 018705 68 TATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG----VEAIVPDASFTNDVIAAS 141 (351)
Q Consensus 68 v~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g----~~~l~~~~~~~n~l~~d~ 141 (351)
.+..|-.|..|...+|+ .+++....+..+ .|.+.++++..++...+.+..++ ..+ +..+......+..+.+-.
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred eccCcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence 34567788888877875 355666667778 89999999888777777776666 222 333333225667777878
Q ss_pred CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEeecCC
Q 018705 142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDR 219 (351)
Q Consensus 142 dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~ 219 (351)
||+-.+|.+. +|.+-.||...-...+....-.-.|.|.++|+...|++++-++ ++|=-...
T Consensus 94 dgrWMyTgse-----------------Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 94 DGRWMYTGSE-----------------DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred cCeEEEecCC-----------------CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 8875555443 5677777766433333333334568999999988898888766 55522111
Q ss_pred CCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 220 AGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 220 ~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.-..++..+.. -....+.+++||...+|...
T Consensus 157 ~c~~~liPe~~-~~i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 157 SCTHELIPEDD-TSIQSLTVMPDGSMLAAANN 187 (311)
T ss_pred ccccccCCCCC-cceeeEEEcCCCcEEEEecC
Confidence 11112222111 11234567777776666544
No 118
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.42 E-value=0.0083 Score=56.49 Aligned_cols=180 Identities=13% Similarity=0.165 Sum_probs=110.7
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCC-CCeEEEc-CCC--eEE
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNE-KGLLKVT-EEG--VEA 126 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~-~gl~~~~-~~g--~~~ 126 (351)
..-.++.++..+..+..+..|+.|-.||..+|+...-......|. .+.+.+++ +++++... ..|+..| +.| ++.
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 344577888666678888889999999999998755445556677 89999888 77766544 4566666 466 444
Q ss_pred ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-EEEeec-CccccceEEEcCCCCEE
Q 018705 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHE-GFYFANGIALSKNEDFV 204 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~-~~~~~ngi~~~~dg~~l 204 (351)
+...+..+++|.+-++|+-+++.+. .+.+..|+-...- +..... ....--.|+++|+++ .
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~ 399 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-W 399 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCCCC-e
Confidence 4444578999999999987877764 2234444322111 111111 112223578899988 4
Q ss_pred EEEec-ceeEEeec--C--CCCceeEEec-cCCCCCCceEECCCCCEEEEEe
Q 018705 205 VVCES-WKRYWLKG--D--RAGILDAFIE-NLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 205 yv~~~-~~~~~i~~--~--~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~ 250 (351)
+.+++ ++++.+.. + +....+.|.. ..+|++-.+.+++||++.++..
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 44444 33333321 1 1112223322 2467888889999998777643
No 119
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.38 E-value=0.01 Score=58.70 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=54.0
Q ss_pred ceEEEEeCCC-----CeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeecC------CCCce-eEEec-cCCC
Q 018705 170 GQLRKYDPKL-----KETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGD------RAGIL-DAFIE-NLPG 232 (351)
Q Consensus 170 g~l~~~d~~~-----~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~------~~~~~-~~~~~-~~~g 232 (351)
++|-.+|..+ .++........+|.|+++||||+++|++.-.. .|.+... +..-. .+..+ .+.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688999876 34555556678999999999999999987544 3443321 11000 11111 1222
Q ss_pred CCCceEECCCCCEEEEEecC
Q 018705 233 GPDNINLAPDGSFWIGLIKM 252 (351)
Q Consensus 233 ~pd~i~~d~~G~lwva~~~~ 252 (351)
.|-..++|.+|+.|++.+..
T Consensus 376 GPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred CcceEEECCCCCEEEeEeec
Confidence 47778999999999998753
No 120
>PTZ00420 coronin; Provisional
Probab=97.38 E-value=0.19 Score=50.23 Aligned_cols=101 Identities=8% Similarity=-0.053 Sum_probs=63.2
Q ss_pred CccccceEEcCC-CCEEEEeCCCCeEEEcC--CC-e--E-------EecCCCCCcccEEEccCCc-EEEEeCCCccCCcc
Q 018705 93 SQSLLGLTTTKD-GGVILCDNEKGLLKVTE--EG-V--E-------AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTD 158 (351)
Q Consensus 93 ~~p~~gl~~d~~-G~L~v~d~~~gl~~~~~--~g-~--~-------~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~ 158 (351)
.... .+++.++ ++++++....+.++++. ++ . . .+......++++++.|++. +.++.+.
T Consensus 75 ~~V~-~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~------- 146 (568)
T PTZ00420 75 SSIL-DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF------- 146 (568)
T ss_pred CCEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC-------
Confidence 4456 8999986 67777666667777762 32 1 1 1222225688899999885 4445433
Q ss_pred cccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 159 FYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 159 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
++.|..||..+++.............++++++|+.|..+..++
T Consensus 147 ----------DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 147 ----------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred ----------CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCC
Confidence 4678889987766433222223467899999999554444444
No 121
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.16 Score=49.22 Aligned_cols=157 Identities=11% Similarity=-0.017 Sum_probs=79.5
Q ss_pred CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-E---EEEeCC--CCeEEEcC-CC-eEEecCCCCCcccEEEccCC-
Q 018705 73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V---ILCDNE--KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG- 143 (351)
Q Consensus 73 g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L---~v~d~~--~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG- 143 (351)
.+|+.+|.+++..+.+........ .-++.+||+ + |+.... ..++.++. .| .+.+..........+++|||
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 468888875555555543322223 567888884 2 344432 25777774 45 55554322333456899999
Q ss_pred cEEEEeCCCccCCcccccccccccCCceEEE--EeCCC---CeEEEeecC-ccccceEEEcCCCCEEEEEec-ce--eEE
Q 018705 144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRK--YDPKL---KETTVLHEG-FYFANGIALSKNEDFVVVCES-WK--RYW 214 (351)
Q Consensus 144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~~---~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~-~~--~~~ 214 (351)
.|.++.... + ...++. |+.++ ++.+.+... .......+++|||+.|++... .+ +++
T Consensus 244 ~Laf~s~~~--g-------------~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 244 LLAFISDRY--G-------------NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred EEEEEECCC--C-------------CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 565554320 0 012333 44432 333444332 222345689999997776543 33 455
Q ss_pred eecC--CCCceeEEeccCCCCCCceEECCCCCEE
Q 018705 215 LKGD--RAGILDAFIENLPGGPDNINLAPDGSFW 246 (351)
Q Consensus 215 i~~~--~~~~~~~~~~~~~g~pd~i~~d~~G~lw 246 (351)
+-+. ..+..+.+.. ..+......+++||+..
T Consensus 309 ~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 309 IMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKI 341 (428)
T ss_pred EEECcccccceEEecc-CCCCccceeECCCCCEE
Confidence 4321 1122232321 11223456788999733
No 122
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.37 E-value=0.0097 Score=59.04 Aligned_cols=178 Identities=13% Similarity=0.108 Sum_probs=108.5
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEecCC
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG-VEAIVPD 130 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l~~~ 130 (351)
+..+.|+...|...+.|+.+..|...+-.- ..+. ....|.-.+.|.|.|-.|++.+..+.-+++. .. .++++..
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence 566776666666677788777777644432 2332 3333442567778886666665666666663 23 6666766
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEEec
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~ 209 (351)
.+....+.+.|+.+..+|.++ +-.+..||-.+|...++..+ -.....+++||+|++|--++.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred ccccceEEECCcccccccCCC-----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence 677888899999866666554 22466666665554443333 334457899999986665555
Q ss_pred ce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCc
Q 018705 210 WK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ 254 (351)
Q Consensus 210 ~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~ 254 (351)
.+ .+|--. .++ +..+..+ .+..+-+.++.+|++.+..+..++
T Consensus 598 d~~I~iWDl~--~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 598 DGLIKIWDLA--NGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred CCcEEEEEcC--CCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCe
Confidence 55 566221 111 1222222 344566789999999998876544
No 123
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.37 E-value=0.0043 Score=57.23 Aligned_cols=176 Identities=13% Similarity=0.222 Sum_probs=106.7
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-C-C-eEEecC-C
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-G-VEAIVP-D 130 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-g-~~~l~~-~ 130 (351)
..+.|.|++.+|.+|+..|.+-.|+...=.++.+......|..++....+|.-.|+....|.++|+. . . ++.+.. .
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh 179 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH 179 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence 4678888888999999999887776421111222111233444888889998777776789999984 2 2 333322 2
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEeecCccccceEEEcCCCCEEEEEec
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
...+.+++++|+...|+|.+. +|.|-.||-.-. +-+++.....-+..+.++|....+..+.-
T Consensus 180 ~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk 242 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK 242 (464)
T ss_pred hhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC
Confidence 257899999999888988875 567777764322 22333333445778899998774444443
Q ss_pred ce--eEEeecCCCCceeEEec--cCCCCCCceEECCCCCEEEEEec
Q 018705 210 WK--RYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 210 ~~--~~~i~~~~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
++ ++| +++.++. +.. ......-++.+.++|++.++...
T Consensus 243 DnlVKlW--DprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 243 DNLVKLW--DPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred CceeEee--cCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 44 555 4444432 111 11112345678888876666543
No 124
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.33 E-value=0.028 Score=51.02 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=99.6
Q ss_pred EEeeCCCeEEEE-----EcCCEEEEEEcCCC--eEEEEeecCCccccceEEcCCC-CEEEEeCC----------------
Q 018705 58 SVVVSKGALYTA-----TRDGWVKYFILHNE--TLVNWKHIDSQSLLGLTTTKDG-GVILCDNE---------------- 113 (351)
Q Consensus 58 ~~d~~~g~lyv~-----~~~g~I~~~d~~~g--~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~---------------- 113 (351)
+|++++..||+. ...|.|-.+|...+ ++..|...+-.|+ -+.+.+|| .|.|++.+
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 566577888884 34688999998633 3345555556799 99999999 78888643
Q ss_pred --CCeEEEc-CCC--eEE--ecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705 114 --KGLLKVT-EEG--VEA--IVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV 184 (351)
Q Consensus 114 --~gl~~~~-~~g--~~~--l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 184 (351)
..|..++ .+| +++ +... ...+..++++++|.+|+.... .-... ...--|..++.. +..+.
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~---qg~~~-------~~~PLva~~~~g-~~~~~ 204 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY---QGDPG-------DAPPLVALHRRG-GALRL 204 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec---CCCCC-------ccCCeEEEEcCC-Cccee
Confidence 1345554 355 333 2222 267889999999999998742 11000 001124444443 22332
Q ss_pred eec------Cc-cccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCC--ceEECCCCCEEEEEe
Q 018705 185 LHE------GF-YFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPD--NINLAPDGSFWIGLI 250 (351)
Q Consensus 185 ~~~------~~-~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd--~i~~d~~G~lwva~~ 250 (351)
+.- .+ .+.-.|++++++..+.+++-.+ ++.+-+...++..... ..+| |++...+| +.++.+
T Consensus 205 ~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~----~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 205 LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV----PLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc----ccCceeeeeecCCc-eEEeCC
Confidence 221 11 3455699999998666666544 4443333334432211 1344 45666666 555543
No 125
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.023 Score=48.24 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=30.7
Q ss_pred CceEEEEeCCCCeEEEeecC-------------ccccceEEEcCCCCEEEEEe
Q 018705 169 YGQLRKYDPKLKETTVLHEG-------------FYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~~~-------------~~~~ngi~~~~dg~~lyv~~ 208 (351)
+.++.+++|++|++..+.+- ...+||||.+++++++|++-
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 35788999999998766421 23589999999998888874
No 126
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.31 E-value=0.038 Score=50.48 Aligned_cols=104 Identities=14% Similarity=0.009 Sum_probs=66.1
Q ss_pred cCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCCCEEEEeCCCCeEEEc--C-C
Q 018705 47 GEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT--E-E 122 (351)
Q Consensus 47 ~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~-~ 122 (351)
..|.+..-.++++||.+..+-+|..|+.|-.||..+|++..-.. .-.... ++++.+..-..++-...+.++-+ . +
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechhh
Confidence 34556677899999765555567889999999999998754321 223344 88887665333333334445444 2 2
Q ss_pred C-eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 123 G-VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 123 g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
. ++.+......+.++++-|.-.+.+|.+.
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~gr 255 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGR 255 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCC
Confidence 3 5555555577888888876667777654
No 127
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.30 E-value=0.1 Score=45.90 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=90.8
Q ss_pred ceEecC--CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCC-----C
Q 018705 43 LTKLGE--GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-----G 115 (351)
Q Consensus 43 ~~~i~~--~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~-----g 115 (351)
-|++++ |.-..-.++.+|.+...+.+|.+|..+..||..+|+.......+...- .+-|+..|++.++.... +
T Consensus 42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~ 120 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTC 120 (327)
T ss_pred CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcce
Confidence 455554 333334577888777888999999999999998997643333333334 78888999876654321 2
Q ss_pred ---eEEEcC-C----C---eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705 116 ---LLKVTE-E----G---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV 184 (351)
Q Consensus 116 ---l~~~~~-~----g---~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 184 (351)
++.+.. . + ...+......++....++-|...|+.- .+|.|-+||..+|+..+
T Consensus 121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-----------------EDGSISIYDARTGKELV 183 (327)
T ss_pred EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-----------------CCCcEEEEEcccCceee
Confidence 222221 1 1 122222235566666666665555432 36889999998875433
Q ss_pred eec--CccccceEEEcCCCCEEEEEecc
Q 018705 185 LHE--GFYFANGIALSKNEDFVVVCESW 210 (351)
Q Consensus 185 ~~~--~~~~~ngi~~~~dg~~lyv~~~~ 210 (351)
-.. .-...|-|.+++|.. .+++.+.
T Consensus 184 ~s~~~h~~~Ind~q~s~d~T-~FiT~s~ 210 (327)
T KOG0643|consen 184 DSDEEHSSKINDLQFSRDRT-YFITGSK 210 (327)
T ss_pred echhhhccccccccccCCcc-eEEeccc
Confidence 221 224577899999986 6665443
No 128
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.29 E-value=0.14 Score=46.93 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCc-----cccceEEcCCCCEEEEeCCCCeEEEc-CCC-
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQ-----SLLGLTTTKDGGVILCDNEKGLLKVT-EEG- 123 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~-----p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g- 123 (351)
....+|+|. +.+.-|+....|.|++=+- .| .++........ -+ .+.++. .+.|++... +++... ..|
T Consensus 17 ~~l~dV~F~-d~~~G~~VG~~g~il~T~D-GG~tW~~~~~~~~~~~~~~l~-~I~f~~-~~g~ivG~~-g~ll~T~DgG~ 91 (302)
T PF14870_consen 17 KPLLDVAFV-DPNHGWAVGAYGTILKTTD-GGKTWQPVSLDLDNPFDYHLN-SISFDG-NEGWIVGEP-GLLLHTTDGGK 91 (302)
T ss_dssp S-EEEEEES-SSS-EEEEETTTEEEEESS-TTSS-EE-----S-----EEE-EEEEET-TEEEEEEET-TEEEEESSTTS
T ss_pred CceEEEEEe-cCCEEEEEecCCEEEEECC-CCccccccccCCCccceeeEE-EEEecC-CceEEEcCC-ceEEEecCCCC
Confidence 456688888 6666666556676766532 34 34443221111 23 566653 457776544 454444 344
Q ss_pred -eEEec--CCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEc
Q 018705 124 -VEAIV--PDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALS 198 (351)
Q Consensus 124 -~~~l~--~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~ 198 (351)
-+.+. ... ..+..+..-.++..++... .|.||+-.-.....+.+.. .....+.+..+
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence 44432 121 3445555545555554432 2456665443344444332 23345567778
Q ss_pred CCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705 199 KNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 199 ~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
+||+++.++..++.|...++.....+.+.......-.+|.++++|+||+...
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~ 205 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR 205 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC
Confidence 8988666665554343322211112222211122345678899999999863
No 129
>PRK13684 Ycf48-like protein; Provisional
Probab=97.29 E-value=0.15 Score=47.50 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=82.2
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeec----CCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eE
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHI----DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE 125 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~----~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~ 125 (351)
...+|+|. +.+..|+....|.|++=.- .| .++..... ..... .++++. ++.|++.....+++-...| .+
T Consensus 47 ~l~~v~F~-d~~~g~avG~~G~il~T~D-gG~tW~~~~~~~~~~~~~l~-~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~ 122 (334)
T PRK13684 47 NLLDIAFT-DPNHGWLVGSNRTLLETND-GGETWEERSLDLPEENFRLI-SISFKG-DEGWIVGQPSLLLHTTDGGKNWT 122 (334)
T ss_pred ceEEEEEe-CCCcEEEEECCCEEEEEcC-CCCCceECccCCccccccee-eeEEcC-CcEEEeCCCceEEEECCCCCCCe
Confidence 45578887 5555555445677777543 34 34443211 11234 677763 4577776554455543334 44
Q ss_pred EecCC--C-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCC
Q 018705 126 AIVPD--A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNE 201 (351)
Q Consensus 126 ~l~~~--~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg 201 (351)
.+... . ..+..+....++.+|+... .|.|++=+-.....+.+... ....+++.+++++
T Consensus 123 ~~~~~~~~~~~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g 184 (334)
T PRK13684 123 RIPLSEKLPGSPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDG 184 (334)
T ss_pred EccCCcCCCCCceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCCC
Confidence 43221 1 2333333333334444332 24566654333344443322 2235678888887
Q ss_pred CEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705 202 DFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 202 ~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
..+.+.+.+..+...+....+.+...........++.+.++|++|+...
T Consensus 185 ~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 185 KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec
Confidence 5333333332332211111122222111111235567778888888743
No 130
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.29 E-value=0.11 Score=49.36 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=57.1
Q ss_pred ccCCc-eEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCC
Q 018705 166 GKPYG-QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS 244 (351)
Q Consensus 166 ~~~~g-~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~ 244 (351)
+..+| .|..||..+++++....++.....+.+++||+.+.+++..-.+|+-+-..++.+..-....++.-++.+.++++
T Consensus 377 gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 34445 68999999999999888888888999999999777776444666654444555543223334455566666664
Q ss_pred EEEEEe
Q 018705 245 FWIGLI 250 (351)
Q Consensus 245 lwva~~ 250 (351)
|+|-.
T Consensus 457 -~iAYa 461 (668)
T COG4946 457 -WIAYA 461 (668)
T ss_pred -eEEEe
Confidence 66643
No 131
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.28 E-value=0.0026 Score=61.39 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--cccceEEEcCCCCEEEEE
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVC 207 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngi~~~~dg~~lyv~ 207 (351)
+.|..|++|+.|+||+.+.+..-........ ...+..=++++++++.+..+- ....|++|+||++++||+
T Consensus 500 ~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G------~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 500 NSPDNLAFDPWGRLWIQTDGSGSTLRNRFRG------VTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred cCCCceEECCCCCEEEEecCCCCccCccccc------ccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 6799999999999999876421111100000 011222356677776655432 356689999999988886
No 132
>PTZ00420 coronin; Provisional
Probab=97.28 E-value=0.13 Score=51.27 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=74.5
Q ss_pred CCCceEEEeeC-CCeEEEEEcCCEEEEEEcCCCe--E-------EEEeecCCccccceEEcCCCCE-EEEeCCCCeEEEc
Q 018705 52 NHPEDVSVVVS-KGALYTATRDGWVKYFILHNET--L-------VNWKHIDSQSLLGLTTTKDGGV-ILCDNEKGLLKVT 120 (351)
Q Consensus 52 ~~pe~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~--~-------~~~~~~~~~p~~gl~~d~~G~L-~v~d~~~gl~~~~ 120 (351)
....+++|.|. +..|.++..||.|..||..++. . ..+........ .+++++++.. +++....+.++++
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence 34568899875 4677889999999999975432 1 11222234455 8999998864 4444455677776
Q ss_pred C--CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705 121 E--EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183 (351)
Q Consensus 121 ~--~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 183 (351)
. ++ ...+... ..+.+++++++|.+.++... ++.|..||+.+++..
T Consensus 154 Dl~tg~~~~~i~~~-~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 154 DIENEKRAFQINMP-KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIA 202 (568)
T ss_pred ECCCCcEEEEEecC-CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEE
Confidence 3 44 3333222 46788999999988876543 457999999877653
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.11 Score=52.98 Aligned_cols=143 Identities=8% Similarity=0.096 Sum_probs=81.3
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC--eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-eEEec
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEAIV 128 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g--~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~~~l~ 128 (351)
|-..|++|+++..+++...+|-|.+|+.... +.+.+...+.... +++.+.. .+..+...+.+.++. +.+ ...+.
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYSN-HFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeeccc-ceEEeeccceEEEeeCCCCCcccee
Confidence 4568999988888888888998988875322 1222221222233 6665433 455555544455554 333 22121
Q ss_pred CCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-ceEEEcCCCCEEEE
Q 018705 129 PDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVV 206 (351)
Q Consensus 129 ~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngi~~~~dg~~lyv 206 (351)
... .-.++++++.+|...+.-+. +-.|-..+......+....+...| -++.++|++++|-+
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAv 155 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAV 155 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEE
Confidence 111 34788999999976555443 113444443333333333443333 47889999998888
Q ss_pred Eecce--eEE
Q 018705 207 CESWK--RYW 214 (351)
Q Consensus 207 ~~~~~--~~~ 214 (351)
+..++ ++|
T Consensus 156 ss~dG~v~iw 165 (933)
T KOG1274|consen 156 SSCDGKVQIW 165 (933)
T ss_pred EecCceEEEE
Confidence 87777 444
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.24 E-value=0.066 Score=51.01 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=89.4
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC---eEEe
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VEAI 127 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g---~~~l 127 (351)
...++-|+.. .+ -+|+|+..+.|++=..+++-............ |++..++.+++++-...+.++++.+. ...+
T Consensus 329 ~G~iRtv~e~-~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~ 405 (626)
T KOG2106|consen 329 FGPIRTVAEG-KG-DILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI 405 (626)
T ss_pred cCCeeEEecC-CC-cEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEE
Confidence 4456677765 33 39999998888887765442222222223455 99999999999988777888888633 2222
Q ss_pred cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEE
Q 018705 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC 207 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~ 207 (351)
.. .-..++.++|.|.+-+... .|+.+.+|..+.++..+...-.--+.+.++|+|.++-++
T Consensus 406 ~~--d~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 406 IE--DPAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred ec--CceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence 11 2355677888885544433 477888887765554444443345678889999877777
Q ss_pred ecce
Q 018705 208 ESWK 211 (351)
Q Consensus 208 ~~~~ 211 (351)
+.++
T Consensus 466 s~d~ 469 (626)
T KOG2106|consen 466 SHDN 469 (626)
T ss_pred cCCC
Confidence 7666
No 135
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.21 E-value=0.012 Score=58.38 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=65.6
Q ss_pred ceEecCCCcCCCceEEEeeCCCeEEEEE----------------------------------------cCCEEEEEEcCC
Q 018705 43 LTKLGEGCVNHPEDVSVVVSKGALYTAT----------------------------------------RDGWVKYFILHN 82 (351)
Q Consensus 43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~----------------------------------------~~g~I~~~d~~~ 82 (351)
+..+..+ ..|..++++++++.+|+.+ .+++|..+|..+
T Consensus 228 ~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t 305 (635)
T PRK02888 228 AWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK 305 (635)
T ss_pred EEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence 3444444 2688888888778888874 124466777655
Q ss_pred -----CeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEE-EcCCC-eE----------EecCC--C-CCcccEEEcc
Q 018705 83 -----ETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLK-VTEEG-VE----------AIVPD--A-SFTNDVIAAS 141 (351)
Q Consensus 83 -----g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~-~~~~g-~~----------~l~~~--~-~~~n~l~~d~ 141 (351)
.++..+...+.+|. |+.+++||+ +|++......+. ++-.. .. .+... . ..|-..++|+
T Consensus 306 ~~~~~~~v~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg 384 (635)
T PRK02888 306 AANAGSALTRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG 384 (635)
T ss_pred cccCCcceEEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC
Confidence 24455556778899 999999996 566554443333 33111 11 11111 1 6788999999
Q ss_pred CCcEEEEe
Q 018705 142 DGTLYFTV 149 (351)
Q Consensus 142 dG~ly~t~ 149 (351)
+|+.|.|-
T Consensus 385 ~G~aytsl 392 (635)
T PRK02888 385 RGNAYTTL 392 (635)
T ss_pred CCCEEEeE
Confidence 99988764
No 136
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.19 E-value=0.0096 Score=55.21 Aligned_cols=148 Identities=10% Similarity=0.091 Sum_probs=93.2
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC-ccccceEEcCCCCEEEEeCCCCeEEEcC-CC---
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--- 123 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--- 123 (351)
|.-.+--+++|.+++-.+-+|..|.-=..||..+|+-..+..... ..+ +++|+|+|-..++.+..+..+++. .+
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 444456689999544444455555433456777887665543333 345 999999998888877778888874 33
Q ss_pred eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCC
Q 018705 124 VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNE 201 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg 201 (351)
..+++...+-+.++.++| .|.+.+|.+. ++.+-.|...+.+. +.++..-...-++.+++|+
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 444444447888999998 4677777664 34566666555433 2233333345567888998
Q ss_pred CEEEEEecce--eEE
Q 018705 202 DFVVVCESWK--RYW 214 (351)
Q Consensus 202 ~~lyv~~~~~--~~~ 214 (351)
+.+.-+..++ ++|
T Consensus 443 ~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLW 457 (459)
T ss_pred ceEEEeccCceeeec
Confidence 8554454444 565
No 137
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.16 E-value=0.29 Score=48.19 Aligned_cols=255 Identities=10% Similarity=0.040 Sum_probs=121.7
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCc------cccceEEcCCCCEEEEeC---------CCCeEEEcC-CCeEE
Q 018705 63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQ------SLLGLTTTKDGGVILCDN---------EKGLLKVTE-EGVEA 126 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~------p~~gl~~d~~G~L~v~d~---------~~gl~~~~~-~g~~~ 126 (351)
++.+|+++.+|.|+.+|.++|+..-....... ...+..++ ++.+|++.. ...++.++. +|...
T Consensus 110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 38999999999999999988976322111111 11022332 366777642 235778885 66222
Q ss_pred ecC----CC--C-----------------CcccEEEcc-CCcEEEEeCCCccCCccccccc--ccccCCceEEEEeCCCC
Q 018705 127 IVP----DA--S-----------------FTNDVIAAS-DGTLYFTVASTKYTPTDFYKDM--AEGKPYGQLRKYDPKLK 180 (351)
Q Consensus 127 l~~----~~--~-----------------~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~--~~~~~~g~l~~~d~~~~ 180 (351)
+.. .. . .-...++|+ +|.+|+........ .+.... ......+.|+-+|.++|
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~--~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPW--NWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCC--ccCCccCCCCCCceeeEEEEcCCCC
Confidence 211 10 0 002346665 56889886432100 000000 01122457999999998
Q ss_pred eEEEeecCc-------cccceEEEc----CCCC---EEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEE
Q 018705 181 ETTVLHEGF-------YFANGIALS----KNED---FVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW 246 (351)
Q Consensus 181 ~~~~~~~~~-------~~~ngi~~~----~dg~---~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 246 (351)
+..-..... ..+....+. -+|. .+|++...+++..-+...|+..--. ... -.++..++ +.+|
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~-~~~--~~~~~~~~-~~vy 342 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR-PEV--EQPMAYDP-GLVY 342 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe-Eee--ccccccCC-ceEE
Confidence 875433211 111111111 2332 4666655553322223334432111 111 12344454 7788
Q ss_pred EEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCC------cccceeEEE
Q 018705 247 IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT------YISFVTSAA 320 (351)
Q Consensus 247 va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~------~~~~~~~~~ 320 (351)
++....... + .... ..+ . .....+.+..+|.++|+++=........ .....+...
T Consensus 343 v~~~~~~~~-~---~~~~-------~~~-~-------~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~ 403 (488)
T cd00216 343 LGAFHIPLG-L---PPQK-------KKR-C-------KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA 403 (488)
T ss_pred Ecccccccc-C---cccc-------cCC-C-------CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence 875321000 0 0000 000 0 1134578999998789876544332100 001122344
Q ss_pred EECCEEEEEecCCCeEEEEeCCCC
Q 018705 321 EFDGNLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 321 ~~~g~L~ig~~~~~~i~~~~~~~~ 344 (351)
..++.||+++. .+.+..++..+=
T Consensus 404 ~~g~~v~~g~~-dG~l~ald~~tG 426 (488)
T cd00216 404 TAGNLVFAGAA-DGYFRAFDATTG 426 (488)
T ss_pred ecCCeEEEECC-CCeEEEEECCCC
Confidence 56788999885 677887776543
No 138
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.16 E-value=0.0079 Score=55.69 Aligned_cols=156 Identities=14% Similarity=0.157 Sum_probs=95.8
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC-CccccceEEcCCCC-EEEEeCCCCeEEEcC-CCeEE-
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EGVEA- 126 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g~~~- 126 (351)
...+.+.+|-|++-.+.+|+.|+.|..+|.++.....|.... .... .+++..||. ++..+....+..++. +....
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~ 390 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRG 390 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence 367889999988889999999999999998544434443221 3356 888888984 565555556666663 22111
Q ss_pred ecCCCCCcccEEEccCCcEEEEeCCCc----cCCcc--------------c----c------cccccccCCceEEEEeCC
Q 018705 127 IVPDASFTNDVIAASDGTLYFTVASTK----YTPTD--------------F----Y------KDMAEGKPYGQLRKYDPK 178 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~ly~t~~~~~----~~~~~--------------~----~------~~~~~~~~~g~l~~~d~~ 178 (351)
+......+.++.++.||.+.+.+-..+ +...+ + . ..+..|..++.||.|+..
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 222225677888999988776653211 11100 0 0 113445667778888877
Q ss_pred CCeEEEee-cCccccceEEEcCCCCEEEEE
Q 018705 179 LKETTVLH-EGFYFANGIALSKNEDFVVVC 207 (351)
Q Consensus 179 ~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~ 207 (351)
+|..-... ..-...|.++.+|....++.+
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFAS 500 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence 77654443 334567778887766545443
No 139
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.14 E-value=0.086 Score=45.63 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=58.4
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP 129 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~ 129 (351)
..+-++.+++...+-..+..|..|++..|.. +++...+.... ..+...|..-+.+-.+..-+.++ .+| .+.+..
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence 4566764333334444466677888877765 55555555555 55555555444433333444444 366 566666
Q ss_pred CCCCcccEEEccCCcEEEEeCC
Q 018705 130 DASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 130 ~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
....+|.+.+..+-.+.++.+.
T Consensus 100 H~aqVNtV~fNeesSVv~Sgsf 121 (307)
T KOG0316|consen 100 HLAQVNTVRFNEESSVVASGSF 121 (307)
T ss_pred ccceeeEEEecCcceEEEeccc
Confidence 6678899999888888877654
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.0067 Score=56.85 Aligned_cols=180 Identities=13% Similarity=0.182 Sum_probs=107.3
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEc-CC-C-eEEec
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT-EE-G-VEAIV 128 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~-~~-g-~~~l~ 128 (351)
+-|.+.+++.+..+.+....|.|+.+...++++..-....+... +++|+.+| .||++...+.++..+ .. . .+.+.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 34567777666666666778889999887777655445667777 99999988 577776555677666 23 3 56665
Q ss_pred CCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee------cCc-cccceEEEcCC
Q 018705 129 PDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH------EGF-YFANGIALSKN 200 (351)
Q Consensus 129 ~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~------~~~-~~~ngi~~~~d 200 (351)
+.. ..-..+|.+.+|. |++..+ ..|-|-.||.++-....-. ..+ ...+.+.|++|
T Consensus 384 D~G~v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 384 DDGSVHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred ecCccceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 542 3445678888887 555544 2466788875532211111 111 23567899999
Q ss_pred CCEEEEEecce--eEEeecCCCCceeEEec----c-CCCCCCceEECCCCC-EEEEEecC
Q 018705 201 EDFVVVCESWK--RYWLKGDRAGILDAFIE----N-LPGGPDNINLAPDGS-FWIGLIKM 252 (351)
Q Consensus 201 g~~lyv~~~~~--~~~i~~~~~~~~~~~~~----~-~~g~pd~i~~d~~G~-lwva~~~~ 252 (351)
.+.|-+++... .+.+.- .-...+|.. + .-+++..++|++.|. +=+|.-.+
T Consensus 447 ~qiLAiaS~~~knalrLVH--vPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVH--VPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred hhhhhhhhhccccceEEEe--ccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence 99776776554 333321 111233321 1 114566688998654 44444333
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.11 E-value=0.046 Score=51.43 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=87.3
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---------CC-
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---------EG- 123 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---------~g- 123 (351)
.+++-+|.+..++.|+..|.||.|...+|+.- .+...-.... .|.|..||..+++.+..|.+.++. ++
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 36677754445556668999999999899752 2211113344 889999999998887777666541 11
Q ss_pred ---eEEecCCCCCcccEEEccCC---cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEE
Q 018705 124 ---VEAIVPDASFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL 197 (351)
Q Consensus 124 ---~~~l~~~~~~~n~l~~d~dG---~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~ 197 (351)
...+.+....+.|+.++.-| ++| |.+. +..+-.||.+.|.+-.-..--..++.+++
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~-----------------D~t~k~wdlS~g~LLlti~fp~si~av~l 225 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLY-TASE-----------------DRTIKLWDLSLGVLLLTITFPSSIKAVAL 225 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEE-EecC-----------------CceEEEEEeccceeeEEEecCCcceeEEE
Confidence 12222222455666666544 233 2221 33466677776654332222345778999
Q ss_pred cCCCCEEEEEecceeEEee
Q 018705 198 SKNEDFVVVCESWKRYWLK 216 (351)
Q Consensus 198 ~~dg~~lyv~~~~~~~~i~ 216 (351)
||-+..+|++...+.+++.
T Consensus 226 Dpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred cccccEEEecCCcceEEee
Confidence 9999999998777755543
No 142
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.10 E-value=0.14 Score=47.99 Aligned_cols=177 Identities=10% Similarity=0.132 Sum_probs=102.5
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-Eeec-C-CccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEec
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHI-D-SQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIV 128 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~-~-~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~ 128 (351)
++...+.+..+..++.+|.....|..+|..-. .... . -... ..+|.+||.|+.+...+++++++. .+ ...+.
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t-s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT-SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE-EeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 55666555555556667755555666664422 2221 1 1234 788999999999888889999983 33 44454
Q ss_pred CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEe-ecCccccceEEEcCCCCEEEE
Q 018705 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVL-HEGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~-~~~~~~~ngi~~~~dg~~lyv 206 (351)
....-+..|.++.+|...++... ++.|..||...- .+..+ .......+.+.|+..|.+|.+
T Consensus 387 ght~~vk~i~FsENGY~Lat~ad-----------------d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAAD-----------------DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred CCCCceeEEEeccCceEEEEEec-----------------CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence 44466788999999965554432 456888886421 12221 233345778999999987766
Q ss_pred EecceeEEeecCCCCceeE---EeccCCCCCCceEECCCCCEEEEEec
Q 018705 207 CESWKRYWLKGDRAGILDA---FIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 207 ~~~~~~~~i~~~~~~~~~~---~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
+...-++.+...+..+... +. ...|..+++.+...-.+...+.+
T Consensus 450 ~g~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 450 AGSDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ecceeEEEEEecccccceeeehhh-hcccccceeeecccceEEeeccc
Confidence 6322233333222333322 22 22356678888655544444443
No 143
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.085 Score=49.89 Aligned_cols=151 Identities=20% Similarity=0.275 Sum_probs=79.1
Q ss_pred ceEEcCCCCEEEEeCCC--------------CeEEEcCCC----------eEEecCCCCCcccEEEccC-CcEEEEeCCC
Q 018705 98 GLTTTKDGGVILCDNEK--------------GLLKVTEEG----------VEAIVPDASFTNDVIAASD-GTLYFTVAST 152 (351)
Q Consensus 98 gl~~d~~G~L~v~d~~~--------------gl~~~~~~g----------~~~l~~~~~~~n~l~~d~d-G~ly~t~~~~ 152 (351)
-|++++||.|||+.... .+++++.++ .++++.+...|.+++++|. |.||+++...
T Consensus 181 ~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 181 RLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred cEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 58999999999986443 133443222 2333334478999999996 8999998653
Q ss_pred ccCCcccccc-cccccCCceEEEE-----eCC-C--CeEEE-------eecCccccceEEEcCC-------CCEEEEEec
Q 018705 153 KYTPTDFYKD-MAEGKPYGQLRKY-----DPK-L--KETTV-------LHEGFYFANGIALSKN-------EDFVVVCES 209 (351)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~g~l~~~-----d~~-~--~~~~~-------~~~~~~~~ngi~~~~d-------g~~lyv~~~ 209 (351)
.-........ +-.+..-|.=+.| ++. . +.... ....-..|-||+|... ++ ++|+..
T Consensus 261 d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~-lfV~~h 339 (399)
T COG2133 261 DALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD-LFVGAH 339 (399)
T ss_pred CcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc-EEEEee
Confidence 1001011011 1111111211111 100 0 00000 0011134678888743 34 888886
Q ss_pred ce--eEEeecCCCCc----eeEEec-cCCCCCCceEECCCCCEEEEEec
Q 018705 210 WK--RYWLKGDRAGI----LDAFIE-NLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 210 ~~--~~~i~~~~~~~----~~~~~~-~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.. .+... ..+. .+-+.. ...+.|.++.+++||.|++++-.
T Consensus 340 gsw~~~~~~--~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 340 GSWPVLRLR--PDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred cceeEEEec--cCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 66 22222 1222 222222 23478999999999999998753
No 144
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.98 E-value=0.004 Score=58.55 Aligned_cols=148 Identities=7% Similarity=0.103 Sum_probs=95.9
Q ss_pred EecCCCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCC
Q 018705 45 KLGEGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE 122 (351)
Q Consensus 45 ~i~~~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~ 122 (351)
.+.++ .-|.++-+.|++ +.+++|..+++|..||..++++ +.+...-+..+ .|.|-++|+-+|.....+-++++..
T Consensus 295 ~f~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 295 RFHLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred EEecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEc
Confidence 45554 358899998877 5667899999999999988875 23333334455 8888899999998887777888752
Q ss_pred --C--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC----eEEEee--cCccc
Q 018705 123 --G--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK----ETTVLH--EGFYF 191 (351)
Q Consensus 123 --g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~----~~~~~~--~~~~~ 191 (351)
+ .+..... ......+...|+|..+++.+. .+.++.|..... ..+.+. ..-.+
T Consensus 372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM-----------------DNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred CCCccchhhcchhhccCcceecCCCCCeehhhcc-----------------CceEEEEecccccccCHhhhhcceeccCc
Confidence 3 2222222 245567788888877776654 234444431100 001111 11246
Q ss_pred cceEEEcCCCCEEEEEeccee
Q 018705 192 ANGIALSKNEDFVVVCESWKR 212 (351)
Q Consensus 192 ~ngi~~~~dg~~lyv~~~~~~ 212 (351)
+..+.+||||.+|.-+++.++
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred eeeEEEcCCCCeEEeecCCcc
Confidence 778999999998877887773
No 145
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.94 E-value=0.38 Score=45.63 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=58.5
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCCC---eEEEcCCC-eEEecCC
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKG---LLKVTEEG-VEAIVPD 130 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~g---l~~~~~~g-~~~l~~~ 130 (351)
++-|...+..+..+..||.+..||..+|++.........| ++.+|..+ .=+++....+ +++++.+. +.++...
T Consensus 281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--ccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence 6667644445666778999999998888775432222223 34444322 2333333332 34445555 5655555
Q ss_pred CCCcccEEEccCCcEEEEeCC
Q 018705 131 ASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~ 151 (351)
.+.+|.+..+|.|.+..+.+.
T Consensus 359 ~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred cCceEEEEECCCCceEEEecC
Confidence 578999999999999988875
No 146
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.93 E-value=0.02 Score=49.82 Aligned_cols=175 Identities=11% Similarity=0.130 Sum_probs=92.4
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCe--EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEe
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI 127 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~--~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l 127 (351)
-..++|+.+.++|.+|..+.-+..+|.+.-+ .+.+....+... .+.+-....-++.....+.+|++ .+| ++.+
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir-~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIR-TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcce-eEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence 4577888667788887766533333432222 222222222122 22233333333333455667776 366 4544
Q ss_pred cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEE
Q 018705 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC 207 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~ 207 (351)
..+ ..++++.+.+||++.....+ +.|-.+|+++-.+-.-.+--...+...++|+.. +||+
T Consensus 182 ~~~-s~VtSlEvs~dG~ilTia~g------------------ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fVa 241 (334)
T KOG0278|consen 182 EFN-SPVTSLEVSQDGRILTIAYG------------------SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE-FFVA 241 (334)
T ss_pred ecC-CCCcceeeccCCCEEEEecC------------------ceeEEeccccccceeeccCccccccccccCCCc-eEEe
Confidence 433 67899999999976543322 367788876432211111112334456889886 7776
Q ss_pred ecce----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 208 ESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 208 ~~~~----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
-... +|.... ..+...+..+.+|....+.+.++|.+|.....
T Consensus 242 Gged~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cCcceEEEEEeccC--CceeeecccCCCCceEEEEECCCCceeeccCC
Confidence 5333 343321 11223333344554566788899988887543
No 147
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.86 E-value=0.16 Score=43.50 Aligned_cols=119 Identities=11% Similarity=0.070 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCE-EEEe--CCCCeEEEcCCC--eEEecCCCCCcccEEEccCCcEE
Q 018705 73 GWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGV-ILCD--NEKGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLY 146 (351)
Q Consensus 73 g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L-~v~d--~~~gl~~~~~~g--~~~l~~~~~~~n~l~~d~dG~ly 146 (351)
..|++++..+.....+... .+... .++..|+|+- .++. ....+..++.++ +..+.. ...|.|..+|+|++.
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceEEEECCCCCEE
Confidence 3477776655544444322 23356 8999999964 3443 223344444444 444433 467899999999877
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
+..... ...|.|..||..+.+..... .......+++||||+++..+.+
T Consensus 116 ~~~g~~--------------n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 116 VLAGFG--------------NLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEEEcc--------------CCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEe
Confidence 665421 12467899998754432222 2234678999999996665544
No 148
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.85 E-value=0.38 Score=46.21 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=43.3
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC--e---EEEEeecCCccccceEEcCCCCEEEEeCCC-CeEEEcCCC
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE--T---LVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVTEEG 123 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g--~---~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~~~g 123 (351)
.-..+++||.+-+++.|.-|.-|..||.+.- . ++.+.....++...+.+...|..+++-++. ....++++|
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 3457899988889999999999999997432 1 222222223333277777777544443333 334445566
No 149
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.78 E-value=0.028 Score=50.86 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=79.3
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEee-------cCC--ccccceEEcCCCCEEEEeCCC----CeEEE
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKH-------IDS--QSLLGLTTTKDGGVILCDNEK----GLLKV 119 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~-------~~~--~p~~gl~~d~~G~L~v~d~~~----gl~~~ 119 (351)
-.++++. +++.++|.+.-.-+..+++ +..++ .|.. +.. ..+ ||+++...--||+.-.+ +-+|-
T Consensus 105 iHdia~~-~~~l~fVNT~fSCLatl~~-~~SF~P~WkPpFIs~la~eDRCHLN-GlA~~~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 105 AHDLALG-AGRLLFVNTLFSCLATVSP-DYSFVPLWKPPFISKLAPEDRCHLN-GMALDDGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred hhheeec-CCcEEEEECcceeEEEECC-CCccccccCCccccccCccCceeec-ceeeeCCeEEEEEEeeccCCcccccc
Confidence 4566774 5566666665555667665 33332 2211 111 346 99985433457653221 22333
Q ss_pred cC-CC--eEE------ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc
Q 018705 120 TE-EG--VEA------IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY 190 (351)
Q Consensus 120 ~~-~g--~~~------l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~ 190 (351)
.+ +| +-. +.++..+|.+-.. .+|++|+.|+. .|.+.++|+++|+.+.+..--.
T Consensus 182 ~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 182 GRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred cccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence 32 33 211 2222234433322 36899999987 5799999999899988887778
Q ss_pred ccceEEEcCCCCEEEEEec
Q 018705 191 FANGIALSKNEDFVVVCES 209 (351)
Q Consensus 191 ~~ngi~~~~dg~~lyv~~~ 209 (351)
+|.|+++. |+.++|+-+
T Consensus 244 ~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 244 FTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CCccccee--CCEEEEEec
Confidence 99999998 776777653
No 150
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.69 E-value=0.0034 Score=35.51 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.3
Q ss_pred CCcccEEEccCCcEEEEeCC
Q 018705 132 SFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~ 151 (351)
..|.+|+++++|+||++|..
T Consensus 2 ~~P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp SSEEEEEEETTSEEEEEECC
T ss_pred cCCcEEEEeCCCCEEEEECC
Confidence 46889999999999999965
No 151
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.67 E-value=0.0027 Score=35.91 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=21.5
Q ss_pred ccccceEEEcCCCCEEEEEecce-eEEe
Q 018705 189 FYFANGIALSKNEDFVVVCESWK-RYWL 215 (351)
Q Consensus 189 ~~~~ngi~~~~dg~~lyv~~~~~-~~~i 215 (351)
+..|.||+++++|+ +||+|+.+ |+++
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQV 27 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEE
Confidence 35799999998887 99999887 6653
No 152
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.66 E-value=0.17 Score=47.12 Aligned_cols=126 Identities=13% Similarity=0.215 Sum_probs=74.9
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCE------EEEEEcCC-----CeEE-----EEeecCC--------ccccceEEcCCCC
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGW------VKYFILHN-----ETLV-----NWKHIDS--------QSLLGLTTTKDGG 106 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~------I~~~d~~~-----g~~~-----~~~~~~~--------~p~~gl~~d~~G~ 106 (351)
+.+=.+|++++.++.+|+-+.+|. ++.++... +.++ .+....+ .+- +|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence 445578999977788888776776 77665432 1111 1111112 456 899988999
Q ss_pred EEEEeCCC-------CeEEEcCCC--eEEe--cCC--------C-----CCcccEEEccCCc-EEEEeCCCccCCccccc
Q 018705 107 VILCDNEK-------GLLKVTEEG--VEAI--VPD--------A-----SFTNDVIAASDGT-LYFTVASTKYTPTDFYK 161 (351)
Q Consensus 107 L~v~d~~~-------gl~~~~~~g--~~~l--~~~--------~-----~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~ 161 (351)
+||++.+. .|++++.+| .+.+ ... . ....++++.+||+ ||+...+...+....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~-- 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR-- 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc--
Confidence 99998665 578888777 3433 111 0 5688899999997 887765421110000
Q ss_pred ccccccCCceEEEEeCCC
Q 018705 162 DMAEGKPYGQLRKYDPKL 179 (351)
Q Consensus 162 ~~~~~~~~g~l~~~d~~~ 179 (351)
........-++++||+++
T Consensus 176 ~~~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKT 193 (326)
T ss_pred cccccCceEEEEEecCCC
Confidence 000011113688999875
No 153
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.65 E-value=0.21 Score=43.97 Aligned_cols=144 Identities=9% Similarity=0.087 Sum_probs=82.3
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC---eEEecCCC
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG---VEAIVPDA 131 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g---~~~l~~~~ 131 (351)
-+++.|+++.+-++..+..|..+|..+.+...-....-..+ -+...-++++|+.+.+.|.+.+-. -. +..+....
T Consensus 111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~ 189 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP 189 (313)
T ss_pred EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee-eeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence 56777777888888888889888876554432222222344 677777788999888877666542 11 22222222
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-ceEEEcCCCCEEEEEecc
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVVCESW 210 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngi~~~~dg~~lyv~~~~ 210 (351)
...-.|.+||+|+-+.+-+. +..+-.||++.---.+....+..| .-|.|+.||+.|--++.+
T Consensus 190 snCicI~f~p~GryfA~GsA-----------------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSA-----------------DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred cceEEEEECCCCceEeeccc-----------------cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 34455678999976655443 234566666411112223334333 357889999743333333
Q ss_pred eeEEeec
Q 018705 211 KRYWLKG 217 (351)
Q Consensus 211 ~~~~i~~ 217 (351)
.-+.|..
T Consensus 253 h~IDIA~ 259 (313)
T KOG1407|consen 253 HFIDIAE 259 (313)
T ss_pred ceEEeEe
Confidence 3566654
No 154
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.51 Score=42.43 Aligned_cols=190 Identities=16% Similarity=0.154 Sum_probs=108.3
Q ss_pred CccccceEEcCCCC-EEEEe-CCCCeEEEcCCC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCccccccccccc
Q 018705 93 SQSLLGLTTTKDGG-VILCD-NEKGLLKVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK 167 (351)
Q Consensus 93 ~~p~~gl~~d~~G~-L~v~d-~~~gl~~~~~~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~ 167 (351)
.+.. +|.++++-+ ||... ....++.++.+| ++++.-. ...|..|+.-.+|.+-+++..
T Consensus 86 ~nvS-~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---------------- 148 (316)
T COG3204 86 ANVS-SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---------------- 148 (316)
T ss_pred cccc-ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh----------------
Confidence 3456 999998875 55543 334688888888 6665433 367888888888877777653
Q ss_pred CCceEE--EEeCCCCeEEEe-----ecCc----cccceEEEcCCCCEEEEEecce--e-EEeec-CCC----------Cc
Q 018705 168 PYGQLR--KYDPKLKETTVL-----HEGF----YFANGIALSKNEDFVVVCESWK--R-YWLKG-DRA----------GI 222 (351)
Q Consensus 168 ~~g~l~--~~d~~~~~~~~~-----~~~~----~~~ngi~~~~dg~~lyv~~~~~--~-~~i~~-~~~----------~~ 222 (351)
...++ .+|+++...... .... ..=.|+|.++..+.+|++-..+ + |.+.. ++. ..
T Consensus 149 -~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 149 -DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred -cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 23443 445543322111 1111 1234899999999999987766 3 33331 100 00
Q ss_pred eeEEeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeE
Q 018705 223 LDAFIENLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI 301 (351)
Q Consensus 223 ~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~ 301 (351)
...|... ..++.+|+. |+|+|=.. +...++++|. +|++
T Consensus 228 ~~~f~~D----vSgl~~~~~~~~LLVLS~------------------------------------ESr~l~Evd~-~G~~ 266 (316)
T COG3204 228 RDLFVLD----VSGLEFNAITNSLLVLSD------------------------------------ESRRLLEVDL-SGEV 266 (316)
T ss_pred cceEeec----cccceecCCCCcEEEEec------------------------------------CCceEEEEec-CCCe
Confidence 1122211 234566643 45665432 2347899999 9998
Q ss_pred EEEEECCCC---Cc--ccceeEEE-EECCEEEEEecCCCeEEEEeCC
Q 018705 302 IRDFNDPDA---TY--ISFVTSAA-EFDGNLYLASLQSNFIGILPLD 342 (351)
Q Consensus 302 ~~~~~~~~g---~~--~~~~~~~~-~~~g~L~ig~~~~~~i~~~~~~ 342 (351)
+..+.-..| .. ..+.-++. .++|.||+.+= .+..++|...
T Consensus 267 ~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE-Pnlfy~F~~~ 312 (316)
T COG3204 267 IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE-PNLFYRFTPQ 312 (316)
T ss_pred eeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec-CCcceecccC
Confidence 765543222 21 22333444 34689999984 6667777643
No 155
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=0.49 Score=41.85 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=95.4
Q ss_pred ecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe---ecCCccccceEEcCCCCEEEEeCCCC---eEEE
Q 018705 46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILCDNEKG---LLKV 119 (351)
Q Consensus 46 i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~L~v~d~~~g---l~~~ 119 (351)
+.++.-..-+++|+.|.+..|-+++.|..+..+...+++++... ......- ++++.++|++..+-+... ++.+
T Consensus 56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 33344456779999988888888999999888887778876543 3334566 899999998877544433 3334
Q ss_pred cCCC-eEE---ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee---cCcccc
Q 018705 120 TEEG-VEA---IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFYFA 192 (351)
Q Consensus 120 ~~~g-~~~---l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~~~~~ 192 (351)
+.++ .+. +......+-.+...|.-.|.|+.+.. ..=++|+.++ .+....+. ..-...
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD---------------nTIk~~~~~~-dddW~c~~tl~g~~~TV 198 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD---------------NTIKVYRDED-DDDWECVQTLDGHENTV 198 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC---------------CeEEEEeecC-CCCeeEEEEecCccceE
Confidence 4334 333 33333455667777766688887641 1124555543 23332222 222245
Q ss_pred ceEEEcCCCCEEEEEecce--eEEe
Q 018705 193 NGIALSKNEDFVVVCESWK--RYWL 215 (351)
Q Consensus 193 ngi~~~~dg~~lyv~~~~~--~~~i 215 (351)
-+++|++.|.+|.-++... ++|.
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeee
Confidence 5789999998777766555 6775
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.96 Score=44.81 Aligned_cols=144 Identities=10% Similarity=-0.022 Sum_probs=85.8
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-E-EEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEec
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-V-NWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIV 128 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~-~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l~ 128 (351)
.++|+..+.+.|-++-.+|.|-.|++..+=+ + .+. ......- +|++.+.|+|+-....+.+...|. ++ +..+.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d 107 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID 107 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeEEec
Confidence 4778887788899999999999999865422 1 222 2223455 899988889998877666777775 55 22221
Q ss_pred CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe---ecCccccceEEEcCCCCEE
Q 018705 129 PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFV 204 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngi~~~~dg~~l 204 (351)
.....+.++++.|.+. +-+.+. +|-++.++-..+.++.. ...-...-.+.+++++..+
T Consensus 108 ~~gg~IWsiai~p~~~~l~Igcd------------------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCD------------------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred CCCcceeEEEeCCccceEEeecC------------------CceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 1125566667666553 334322 24455555444444321 1112334457888888767
Q ss_pred EEEecceeEEeec
Q 018705 205 VVCESWKRYWLKG 217 (351)
Q Consensus 205 yv~~~~~~~~i~~ 217 (351)
..+..++++.+-+
T Consensus 170 ~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 170 AGGSIDGVIRIWD 182 (691)
T ss_pred EecccCceEEEEE
Confidence 7777666443333
No 157
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.24 Score=50.52 Aligned_cols=174 Identities=9% Similarity=0.078 Sum_probs=98.1
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEc-CCC--eEEecCCC
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDA 131 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~-~~g--~~~l~~~~ 131 (351)
+++.. .+.+.+++.++.|.++....++...+.....-|...++++.+|...++.+..- +-.++ .++ .+.+....
T Consensus 61 ~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 61 SIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred EEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence 44443 45677788888888887656654433222223443889999998777655543 33334 344 55554444
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc----c----cc-ceEEEcCCCC
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF----Y----FA-NGIALSKNED 202 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~----~----~~-ngi~~~~dg~ 202 (351)
.-+-+|.++|+|.+..+.+. +|.|..|+..++.......+. . .+ +-++++|++.
T Consensus 139 apVl~l~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred CceeeeeEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 56778899999988776653 678999988766543332221 1 11 2368999966
Q ss_pred EEEEEecce---eEEeecCCCCceeEEecc-CCCCCCceEECCCCCEEEEEe
Q 018705 203 FVVVCESWK---RYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 203 ~lyv~~~~~---~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~ 250 (351)
.+.+....+ .|...+- ...-.+.+. ....-.-+.+++.|.+..+..
T Consensus 202 ~la~~~~d~~Vkvy~r~~w--e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 202 TLAVPPVDNTVKVYSRKGW--ELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred eEEeeccCCeEEEEccCCc--eeheeecccccccceEEEEEcCCCcEEeeec
Confidence 455555555 3444321 000111111 111123457888886555543
No 158
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.51 E-value=0.41 Score=47.18 Aligned_cols=190 Identities=13% Similarity=0.096 Sum_probs=94.6
Q ss_pred eEEEeeCCCeEEEEEcCC------------------EEEEEEcCCCeEEEEeecC----------CccccceEE-cCCCC
Q 018705 56 DVSVVVSKGALYTATRDG------------------WVKYFILHNETLVNWKHID----------SQSLLGLTT-TKDGG 106 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g------------------~I~~~d~~~g~~~~~~~~~----------~~p~~gl~~-d~~G~ 106 (351)
+.++|+.++.+|+++.++ .|+.+|.++|+..-..... ..|. -... +-+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~-~~~~~~~~g~ 299 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS-LADIKPKDGK 299 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe-EEeccccCCC
Confidence 467776689999998665 7999999999764221111 1111 0111 12343
Q ss_pred ----EEEEeCCCCeEEEcC-CCeEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe
Q 018705 107 ----VILCDNEKGLLKVTE-EGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE 181 (351)
Q Consensus 107 ----L~v~d~~~gl~~~~~-~g~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 181 (351)
++++...+.++.++. +|...+..... -.+++.++ +.+|+......................|.|+-+|.++|+
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 677766666888885 66332222111 12344455 778875422111000000000011235789999998887
Q ss_pred EEEeecCcc--------ccc---eEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCC--CceEECCCCCEEE
Q 018705 182 TTVLHEGFY--------FAN---GIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGP--DNINLAPDGSFWI 247 (351)
Q Consensus 182 ~~~~~~~~~--------~~n---gi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~p--d~i~~d~~G~lwv 247 (351)
..--..... .+. .++. .++.+|+.+..+ .+.++ .+.|+..--. .+++.. .=+.+..+|++||
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald-~~tG~~lW~~-~~~~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFD-ATTGKELWKF-RTPSGIQATPMTYEVNGKQYV 453 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEE-CCCCceeeEE-ECCCCceEcCEEEEeCCEEEE
Confidence 643222110 111 1233 334688877666 44444 3344432111 222111 1134456899999
Q ss_pred EEecC
Q 018705 248 GLIKM 252 (351)
Q Consensus 248 a~~~~ 252 (351)
++..+
T Consensus 454 ~~~~g 458 (488)
T cd00216 454 GVMVG 458 (488)
T ss_pred EEEec
Confidence 98654
No 159
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.49 Score=41.09 Aligned_cols=128 Identities=10% Similarity=0.087 Sum_probs=79.8
Q ss_pred EEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC----eEEecCCCCCcccEEEc
Q 018705 68 TATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG----VEAIVPDASFTNDVIAA 140 (351)
Q Consensus 68 v~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g----~~~l~~~~~~~n~l~~d 140 (351)
.+..|..++.||-.+|++ ++|....+..+ .++|+.+-.+.+..+-..-++.+ +.. ++++......+.+|.+.
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 344577899999989987 56666667788 99998887777765555555555 221 33333222334343332
Q ss_pred cCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc-cccceEEEcCCCCEEEEEecceeEEeec
Q 018705 141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCESWKRYWLKG 217 (351)
Q Consensus 141 ~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~ngi~~~~dg~~lyv~~~~~~~~i~~ 217 (351)
+...++- .-+|.+..||...|+.. .+-+ ...|.+.+++|++.+.++..+..+.+-+
T Consensus 155 --~heIvaG-----------------S~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 155 --EHEIVAG-----------------SVDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred --ccEEEee-----------------ccCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 3334433 33688999987766543 2333 3458899999999777777666444433
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=1 Score=44.62 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCC-EEEE-eCCCCeEEEc-CCC-
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGG-VILC-DNEKGLLKVT-EEG- 123 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~-L~v~-d~~~gl~~~~-~~g- 123 (351)
+.-..-|+++|. ++++||....+|.|..||+.+++...- ...++... .|+..+.+. +-|+ +.+ -++-+. ..+
T Consensus 67 ~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~IgcddG-vl~~~s~~p~~ 143 (691)
T KOG2048|consen 67 PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCDDG-VLYDFSIGPDK 143 (691)
T ss_pred CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecCCc-eEEEEecCCce
Confidence 344567899998 799999999999999999988866433 33334445 777776664 4444 322 222222 122
Q ss_pred eE---EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe----ecCccc-----
Q 018705 124 VE---AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGFYF----- 191 (351)
Q Consensus 124 ~~---~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~----~~~~~~----- 191 (351)
++ .+..+..++-++..+++|.-.++-+. +|.|..||.++++.-.. ..++..
T Consensus 144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-----------------Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-----------------DGVIRIWDVKSGQTLHIITMQLDRLSKREPTI 206 (691)
T ss_pred EEEEeecccccceEEEEEecCCccEEEeccc-----------------CceEEEEEcCCCceEEEeeecccccccCCceE
Confidence 22 22222267778888888863344332 45677788776553221 122222
Q ss_pred cceEEEcCCCCEEEEEecce--eEE
Q 018705 192 ANGIALSKNEDFVVVCESWK--RYW 214 (351)
Q Consensus 192 ~ngi~~~~dg~~lyv~~~~~--~~~ 214 (351)
..++.+=.++. +.-+|+.+ .+|
T Consensus 207 VWSv~~Lrd~t-I~sgDS~G~V~FW 230 (691)
T KOG2048|consen 207 VWSVLFLRDST-IASGDSAGTVTFW 230 (691)
T ss_pred EEEEEEeecCc-EEEecCCceEEEE
Confidence 23445546664 66677766 677
No 161
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.47 E-value=0.71 Score=42.49 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=46.2
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCC-CeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHN-ETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG 123 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~-g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g 123 (351)
..-|-+.|.|.+..|..|+.||.+++|.... +..+.+...+.+.. .=.|-++|...++-...|.++++ + +|
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct-~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT-CGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc-cccccCCCceEEEEecCceEEEEecCCC
Confidence 3456677888778888999999999998655 34455544333333 33455788555554456777776 3 66
No 162
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.42 E-value=0.035 Score=49.79 Aligned_cols=135 Identities=13% Similarity=0.227 Sum_probs=77.0
Q ss_pred cccceEEcCCCCEEEEeCCCCeEEEcC-C------------------C---eEEecCCCCCcccEEEccCCcEEEEeCCC
Q 018705 95 SLLGLTTTKDGGVILCDNEKGLLKVTE-E------------------G---VEAIVPDASFTNDVIAASDGTLYFTVAST 152 (351)
Q Consensus 95 p~~gl~~d~~G~L~v~d~~~gl~~~~~-~------------------g---~~~l~~~~~~~n~l~~d~dG~ly~t~~~~ 152 (351)
|...-+|.+||.|+.+.+...-+++-. . + ++++.+...-+|++.+.|...|.++.+.
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr- 192 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR- 192 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC-
Confidence 333677889998887655443233210 1 1 2334444467899999999989888764
Q ss_pred ccCCcccccccccccCCceEEEEeCCCCeEEE---eecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEE
Q 018705 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV---LHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAF 226 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~ 226 (351)
++.|-.||-+.-..+. +.........|.++|.|.+|.++..-. .|.+. +.+.|
T Consensus 193 ----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-----T~Qcf 251 (430)
T KOG0640|consen 193 ----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-----TYQCF 251 (430)
T ss_pred ----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc-----ceeEe
Confidence 4556666643211111 112223456789999999888865443 35444 22344
Q ss_pred eccCC--CCCC---ceEECCCCCEEEEEec
Q 018705 227 IENLP--GGPD---NINLAPDGSFWIGLIK 251 (351)
Q Consensus 227 ~~~~~--g~pd---~i~~d~~G~lwva~~~ 251 (351)
....| +... .+..++.|++|++...
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEecc
Confidence 43212 1112 2456788999998754
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.40 E-value=0.35 Score=41.28 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=65.9
Q ss_pred CeEEEcC-CC-eEEecCC-CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc
Q 018705 115 GLLKVTE-EG-VEAIVPD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY 190 (351)
Q Consensus 115 gl~~~~~-~g-~~~l~~~-~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~ 190 (351)
.+++++. +. ...+... ...+.+++.+|+|. +.+.... ....+..||.+...+..+. -.
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~~--~~ 101 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSFG--TQ 101 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEeec--CC
Confidence 4566653 33 3333221 13588999999995 4443321 1236888887644443332 24
Q ss_pred ccceEEEcCCCCEEEEEecce-----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 191 FANGIALSKNEDFVVVCESWK-----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 191 ~~ngi~~~~dg~~lyv~~~~~-----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
..|.|.++|+|+++.++..++ .+| +.. +.+............++.+++|++.++...
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~w--d~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFW--DVR--KKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEE--ECC--CCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 568899999999888876543 344 211 222222211122456789999998887643
No 164
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.40 E-value=0.025 Score=51.65 Aligned_cols=144 Identities=8% Similarity=0.105 Sum_probs=90.0
Q ss_pred ceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEE-EEeCCCCeEEEc-C--CC-eEEec
Q 018705 55 EDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVI-LCDNEKGLLKVT-E--EG-VEAIV 128 (351)
Q Consensus 55 e~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~-v~d~~~gl~~~~-~--~g-~~~l~ 128 (351)
.++-++|-+-.+.. +..|+.|+.+|..++....-.....+++ +|+++|++-.| +++....+|-+| . .. ..+..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 45666654444443 3468899999987775533333456788 99999987444 455556788877 2 23 44444
Q ss_pred CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe--ecCccccceEEEcCCCCEEEE
Q 018705 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~ngi~~~~dg~~lyv 206 (351)
+..+.+.++.++|-|.=+++.+. +..|-.|....+.-+.+ ....+..-++.+|.|.++++-
T Consensus 270 dhvsAV~dVdfsptG~Efvsgsy-----------------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSY-----------------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred ccceeEEEeccCCCcchhccccc-----------------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 44477888999999987777664 22344444333332222 234567778999999985554
Q ss_pred Eecc-e-eEEee
Q 018705 207 CESW-K-RYWLK 216 (351)
Q Consensus 207 ~~~~-~-~~~i~ 216 (351)
++.. + |+|-.
T Consensus 333 GSdd~nvRlWka 344 (433)
T KOG0268|consen 333 GSDDGNVRLWKA 344 (433)
T ss_pred cCCCcceeeeec
Confidence 3333 3 88854
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.39 E-value=0.086 Score=48.80 Aligned_cols=174 Identities=15% Similarity=0.162 Sum_probs=97.0
Q ss_pred CCccccccCCCCC--CCcCccCceEecCCCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccce
Q 018705 23 SVSSLASLLSISK--ESSSMKGLTKLGEGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGL 99 (351)
Q Consensus 23 ~~~~~~~~~~~p~--~~~~l~~~~~i~~~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl 99 (351)
+=|...+.|+.|. ....|+.-.+...|.-..---++|.|-. +.|..+..|+.|..|+..+|+.-.-.......+ .+
T Consensus 101 SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~ 179 (472)
T KOG0303|consen 101 SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SM 179 (472)
T ss_pred CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EE
Confidence 4444455677777 4455553333333432333356676644 445667778999999988886532223445567 89
Q ss_pred EEcCCCCEEEEeCCCCeEEEc-C-CC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEE
Q 018705 100 TTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK 174 (351)
Q Consensus 100 ~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~ 174 (351)
.++.+|.++++.....-+|+. + .| +..-... ...+.-..+-.+|. .+|+.-++.+ ...+-.
T Consensus 180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~s-------------eRq~aL 245 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMS-------------ERQIAL 245 (472)
T ss_pred EeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeecccccc-------------ccceec
Confidence 999999999988777666665 4 56 2222111 14555566666776 4444322221 123445
Q ss_pred EeCCCCeEEEeecCccccceEE---EcCCCCEEEEEecce
Q 018705 175 YDPKLKETTVLHEGFYFANGIA---LSKNEDFVVVCESWK 211 (351)
Q Consensus 175 ~d~~~~~~~~~~~~~~~~ngi~---~~~dg~~lyv~~~~~ 211 (351)
|||+.-+.-.....+...|||. .++|.+.+|++--+.
T Consensus 246 wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 246 WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred cCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCC
Confidence 5554322112223344455554 367777888875443
No 166
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.37 E-value=0.8 Score=42.13 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=91.8
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-- 123 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-- 123 (351)
|....-+++++++.--.+|....|+.|-+||....++. .+...-...+ ++...|.-++.++.......|++. +.
T Consensus 191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccce
Confidence 44566789999866668888889999999999777663 3322223355 777777777777766777888873 33
Q ss_pred eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCC
Q 018705 124 VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNE 201 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg 201 (351)
+.++....+.+..+..-+ |+.+| |.+. ++.|..||...|+... +...-.....++++|..
T Consensus 270 V~~l~GH~~~V~~V~~~~~dpqvi-t~S~-----------------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPTDPQVI-TGSH-----------------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred EEEecCCCCcceeEEeecCCCceE-EecC-----------------CceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence 666665445556665554 56665 3332 4567888876665433 33334456678899987
Q ss_pred CEEEEEec
Q 018705 202 DFVVVCES 209 (351)
Q Consensus 202 ~~lyv~~~ 209 (351)
. +|.+..
T Consensus 332 ~-~fASas 338 (460)
T KOG0285|consen 332 N-LFASAS 338 (460)
T ss_pred h-hhhccC
Confidence 5 555443
No 167
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.34 E-value=0.056 Score=54.17 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=91.7
Q ss_pred CceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-eEE----
Q 018705 54 PEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEA---- 126 (351)
Q Consensus 54 pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~~~---- 126 (351)
-.||+|.|.++++|+ |.-||++..|+-.+.++..|.....-.. .+++.|+|...|.....|..++. ..| .-+
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 469999998888887 6779999999987888888876655566 89999999765555455655554 344 111
Q ss_pred ecCC--C----CCcccEEEccCC--cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc---ceE
Q 018705 127 IVPD--A----SFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA---NGI 195 (351)
Q Consensus 127 l~~~--~----~~~n~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---ngi 195 (351)
+... . ..+.++.+.|-. .+.||.. +.+|.+||..+.++.....++... .--
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------------------DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A 552 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------------------DSRIRIYDGRDKDLVHKFKGFRNTSSQISA 552 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecC------------------CCceEEEeccchhhhhhhcccccCCcceee
Confidence 1110 0 346666655422 4666653 347888887544443334444333 335
Q ss_pred EEcCCCCEEEEEecce--eEEe
Q 018705 196 ALSKNEDFVVVCESWK--RYWL 215 (351)
Q Consensus 196 ~~~~dg~~lyv~~~~~--~~~i 215 (351)
.|+.||+.++.+..+. .+|-
T Consensus 553 sfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 553 SFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred eEccCCCEEEEeecCceEEEEe
Confidence 7888999877766555 4553
No 168
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.33 E-value=0.62 Score=43.60 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=76.1
Q ss_pred ceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceE
Q 018705 98 GLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL 172 (351)
Q Consensus 98 gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l 172 (351)
-|.+.||.+..++=......+++ . +| .+.+.... ..+.+.+.-|||.=+++.+. ++.+
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~-----------------dr~i 336 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP-----------------DRTI 336 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC-----------------CCcE
Confidence 68889999766654444445555 2 56 33343332 45667777788755555443 4578
Q ss_pred EEEeCCCCeEEEeec-CccccceEEEcCCCCEEEEEecceeEEeecCCCCceeE-EeccCCCCCCceEECCCCCEEEEEe
Q 018705 173 RKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDA-FIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 173 ~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~-~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
+.+|.++.....+.. .......+++++||++++......++.+-+. ..+.+. .+.. ......+..+.+|++.+...
T Consensus 337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~-e~~~dr~lise-~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNR-EARVDRGLISE-EQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeech-hhhhhhccccc-cCceeEEEEcCCCcEEEEEc
Confidence 888876433222211 1234557899999998887776664443221 011111 2211 11234567888998777654
Q ss_pred c
Q 018705 251 K 251 (351)
Q Consensus 251 ~ 251 (351)
.
T Consensus 415 ~ 415 (519)
T KOG0293|consen 415 Q 415 (519)
T ss_pred c
Confidence 3
No 169
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.29 E-value=0.4 Score=46.85 Aligned_cols=119 Identities=16% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-------eEEEeec--------C-------
Q 018705 132 SFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-------ETTVLHE--------G------- 188 (351)
Q Consensus 132 ~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~~--------~------- 188 (351)
.+|.+|++.|. |.+|++.+...-. .+..-..-....-|.|++|-|.++ +.+.+.. .
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 78999999985 7899987642100 000000111123467888877765 3333321 1
Q ss_pred ---ccccceEEEcCCCCEEEEEecce------eEE------eecCCCCceeEEecc-CCCCCCceEECCCCC-EEEEEec
Q 018705 189 ---FYFANGIALSKNEDFVVVCESWK------RYW------LKGDRAGILDAFIEN-LPGGPDNINLAPDGS-FWIGLIK 251 (351)
Q Consensus 189 ---~~~~ngi~~~~dg~~lyv~~~~~------~~~------i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~-lwva~~~ 251 (351)
+.+|++|+|++.|+ ||+++... ++. ..+++.++...|... ...---|.++.+||+ ++|+...
T Consensus 496 ~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQH 574 (616)
T COG3211 496 ANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQH 574 (616)
T ss_pred cccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEecC
Confidence 34599999999998 99976543 111 123456666655432 111124678999985 9999876
Q ss_pred C
Q 018705 252 M 252 (351)
Q Consensus 252 ~ 252 (351)
+
T Consensus 575 P 575 (616)
T COG3211 575 P 575 (616)
T ss_pred C
Confidence 5
No 170
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.28 E-value=0.58 Score=44.11 Aligned_cols=79 Identities=20% Similarity=0.356 Sum_probs=45.4
Q ss_pred eEEEEeCCCCeEEEeec-------CccccceEEEcC---CCC-EEEEEecce---eEEeecCCCCc-----eeEEeccCC
Q 018705 171 QLRKYDPKLKETTVLHE-------GFYFANGIALSK---NED-FVVVCESWK---RYWLKGDRAGI-----LDAFIENLP 231 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~~-------~~~~~ngi~~~~---dg~-~lyv~~~~~---~~~i~~~~~~~-----~~~~~~~~~ 231 (351)
++|++|+.++.++.+.. .+..+.|+|+.. +|+ +.++....+ .|.+.....+. ++.| .++
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence 58888988887766532 334578999853 455 444455444 56665332332 2233 244
Q ss_pred CCCCceEECCC-CCEEEEEec
Q 018705 232 GGPDNINLAPD-GSFWIGLIK 251 (351)
Q Consensus 232 g~pd~i~~d~~-G~lwva~~~ 251 (351)
+.+-|++.|.+ |.||++...
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT
T ss_pred CcceEEEEecccCCEEEecCc
Confidence 56788888765 689999653
No 171
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.27 E-value=0.9 Score=41.62 Aligned_cols=173 Identities=16% Similarity=0.212 Sum_probs=82.2
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCC
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPD 130 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~ 130 (351)
+|.++ ++..|+....|.|++-.-....++.+. ...+.|. ++..-.++..+++.....+++-...| -+.+...
T Consensus 66 ~I~f~--~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~ 142 (302)
T PF14870_consen 66 SISFD--GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSE 142 (302)
T ss_dssp EEEEE--TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S
T ss_pred EEEec--CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccC
Confidence 45554 345666556675555543223455543 2235666 66665667777776666666665555 4443333
Q ss_pred -CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEE-EEeCCCCeEEEeec-CccccceEEEcCCCCEEEEE
Q 018705 131 -ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVC 207 (351)
Q Consensus 131 -~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~-~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~ 207 (351)
....+++...+||++..... .|.++ .+++.....+.... .-.....|.+++|+. ||+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~ 203 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWML 203 (302)
T ss_dssp ----EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEE
T ss_pred CcceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EEEE
Confidence 36677888888987444433 24554 44554222333322 234556788999987 8887
Q ss_pred ecceeEEeecCCCCceeEEecc-CC----CC-CCceEECCCCCEEEEEec
Q 018705 208 ESWKRYWLKGDRAGILDAFIEN-LP----GG-PDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 208 ~~~~~~~i~~~~~~~~~~~~~~-~~----g~-pd~i~~d~~G~lwva~~~ 251 (351)
..++.+...+. ....+.+... .+ ++ --.++..+++.+|++...
T Consensus 204 ~~Gg~~~~s~~-~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 204 ARGGQIQFSDD-PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp ETTTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred eCCcEEEEccC-CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 75555555431 1122222211 11 11 012477788999998765
No 172
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.25 E-value=0.86 Score=42.11 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=66.9
Q ss_pred cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-------eEE--
Q 018705 144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-------RYW-- 214 (351)
Q Consensus 144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-------~~~-- 214 (351)
++|+.|.... + ..++++.+|.+++++.-.......+| ++++||++.+|++++-- |-.
T Consensus 4 rvyV~D~~~~------------~-~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv 69 (342)
T PF06433_consen 4 RVYVQDPVFF------------H-MTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVV 69 (342)
T ss_dssp EEEEEE-GGG------------G-SSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCccc------------c-ccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEE
Confidence 6888886411 1 13589999999888755555445555 77999999999987632 222
Q ss_pred -eecCCCCc--eeEEeccC-----CCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCC
Q 018705 215 -LKGDRAGI--LDAFIENL-----PGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS 285 (351)
Q Consensus 215 -i~~~~~~~--~~~~~~~~-----~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
+-+..+-. .|+.+... -.++..+.+..||+ +||....+
T Consensus 70 ~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP--------------------------------- 116 (342)
T PF06433_consen 70 EIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP--------------------------------- 116 (342)
T ss_dssp EEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS---------------------------------
T ss_pred EEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC---------------------------------
Confidence 22222111 22222211 01345567888886 77776543
Q ss_pred CCceEEEEEECCCCeEEEEEECC
Q 018705 286 DAGARVVKVDGNDGKIIRDFNDP 308 (351)
Q Consensus 286 ~~~~~v~~~~~~~g~~~~~~~~~ 308 (351)
...|-.+|-+.+|.+..+..|
T Consensus 117 --a~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 117 --ATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp --SEEEEEEETTTTEEEEEEEGT
T ss_pred --CCeEEEEECCCCceeeeecCC
Confidence 346777788666776666544
No 173
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.23 E-value=0.77 Score=40.51 Aligned_cols=176 Identities=13% Similarity=0.126 Sum_probs=95.1
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EE--eecCCccccceEEcCCC-CEEEEeCCCCeEEEc--CC
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NW--KHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT--EE 122 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~--~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~--~~ 122 (351)
++...-.++++..++-.|-.+..++.+..++....++. .. .......- .++.++.. .++++.++...++++ ..
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEecc
Confidence 34455679999965567778888887777765444321 11 11112333 56777543 566666665566665 34
Q ss_pred C--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705 123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK 199 (351)
Q Consensus 123 g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~ 199 (351)
+ ....... ..-..++..|+|. +-+.+ ....|..+|..+.+...-.+...+.|-++++.
T Consensus 97 ~k~~~~i~~~-~eni~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 97 GKCTARIETK-GENINITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNN 157 (313)
T ss_pred CcEEEEeecc-CcceEEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccceeeeeeecC
Confidence 4 3333222 2223456667664 33322 23567777765443322223334678899987
Q ss_pred CCCEEEEEecce-eEEeec-CCCCceeEEeccCCCCCCc---eEECCCCCEEEEE
Q 018705 200 NEDFVVVCESWK-RYWLKG-DRAGILDAFIENLPGGPDN---INLAPDGSFWIGL 249 (351)
Q Consensus 200 dg~~lyv~~~~~-~~~i~~-~~~~~~~~~~~~~~g~pd~---i~~d~~G~lwva~ 249 (351)
+++ ++|.+++. .+.|-. +....+.. +...|.| |.+|++|+++...
T Consensus 158 ~nd-~Fflt~GlG~v~ILsypsLkpv~s----i~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 158 SND-LFFLTNGLGCVEILSYPSLKPVQS----IKAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred CCC-EEEEecCCceEEEEeccccccccc----cccCCcceEEEEECCCCceEeec
Confidence 777 77766664 444322 22222221 2223444 5789999866554
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.21 E-value=1.5 Score=43.63 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=47.4
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~ 120 (351)
.-.++++-|++..|.++. +.+++.+|+.+|.. ++........+ .++..++|..|.+.....++.++
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCCCceeEEEe
Confidence 445789997666666654 56799999988754 44444445677 89999999999877666666666
No 175
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.19 E-value=0.19 Score=48.08 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=87.7
Q ss_pred CccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC--eEEEEeecCC----ccccceEEcCCCC-EEEEe
Q 018705 39 SMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDS----QSLLGLTTTKDGG-VILCD 111 (351)
Q Consensus 39 ~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g--~~~~~~~~~~----~p~~gl~~d~~G~-L~v~d 111 (351)
.+..+..+..|.+ --.++++.....+|++.. |.|-.||.... +.-.-.-.+. ... ...+.+||+ |+++.
T Consensus 409 harq~~tL~HGEv--VcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGG 484 (705)
T KOG0639|consen 409 HARQINTLAHGEV--VCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGG 484 (705)
T ss_pred hHHhhhhhccCcE--EEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEecc
Confidence 3444555665544 235566655678888765 45878876221 1111001111 122 445568886 55554
Q ss_pred CCCCeEEEcC----CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-
Q 018705 112 NEKGLLKVTE----EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV- 184 (351)
Q Consensus 112 ~~~gl~~~~~----~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~- 184 (351)
. ...+.++. +- ...+.......+.+++++|-.+-|++-+ +|.|.+||..++.+..
T Consensus 485 e-astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs-----------------dGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 485 E-ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS-----------------DGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred c-cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc-----------------CCcEEEEEcccceeeec
Confidence 4 33444442 22 2222222245667889999988887755 5789999987543322
Q ss_pred eecCccccceEEEcCCCCEEEEEecce--eEE
Q 018705 185 LHEGFYFANGIALSKNEDFVVVCESWK--RYW 214 (351)
Q Consensus 185 ~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~ 214 (351)
+...-....+|.+++||..||-.-.++ |-|
T Consensus 547 fqGhtDGascIdis~dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCW 578 (705)
T ss_pred ccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence 222233456789999999899877666 655
No 176
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.18 E-value=1.2 Score=42.44 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=55.4
Q ss_pred ccceEEEcCCCCEEEEEecce-eEEeecCC-CCceeEEec-cCC--C-CCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705 191 FANGIALSKNEDFVVVCESWK-RYWLKGDR-AGILDAFIE-NLP--G-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 264 (351)
Q Consensus 191 ~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~-~~~~~~~~~-~~~--g-~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~ 264 (351)
...++.+.+++. +|+....+ .++..+.. ..+...+.. ..+ + ..-.+.+.+++.+|++...
T Consensus 282 ~l~~v~~~~dg~-l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------------- 347 (398)
T PLN00033 282 RIQNMGWRADGG-LWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------------- 347 (398)
T ss_pred ceeeeeEcCCCC-EEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-------------
Confidence 446788888887 66654444 45544321 111001211 111 1 1234567788899998643
Q ss_pred hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEE
Q 018705 265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGIL 339 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~ 339 (351)
|.+++-.. .|+.-......++. ...+..+.+ .+++.|+..- ++-|.|+
T Consensus 348 ------------------------G~v~~s~D-~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 348 ------------------------GILLRSTD-GGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred ------------------------CcEEEeCC-CCcceeEccccCCC-CcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 33444444 66654433322222 223556664 4588998875 4556554
No 177
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.15 E-value=1.4 Score=42.58 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=73.2
Q ss_pred EEEEEcCC---EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcCCC--eEEecCCCCCccc
Q 018705 66 LYTATRDG---WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTEEG--VEAIVPDASFTND 136 (351)
Q Consensus 66 lyv~~~~g---~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~~g--~~~l~~~~~~~n~ 136 (351)
.|+....+ ++++++.++++...+....++-. ..++.+||+ |.++.... .+|.++-++ ...+......-..
T Consensus 208 ~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~ 286 (425)
T COG0823 208 AYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTS 286 (425)
T ss_pred EEEEEecCCCceEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccC
Confidence 35544333 48888887776655554444444 566778884 43343332 467777544 3333332211112
Q ss_pred EEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe
Q 018705 137 VIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 137 l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~ 208 (351)
=.++||| .|+|+.+.. +.-.|+++|+++++.+.+.........-.++|||+.+.+..
T Consensus 287 Ps~spdG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 287 PSWSPDGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred ccCCCCCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 3577899 466654320 11269999999888777665444333456899999777765
No 178
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.08 E-value=1.3 Score=41.80 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=65.3
Q ss_pred EeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC----CccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCCC-C
Q 018705 59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPDA-S 132 (351)
Q Consensus 59 ~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~----~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~~-~ 132 (351)
++ .++.+|+++.+|.|+.+|+.+++.. |.... .... +-.+..+|++|+++....++.++. +|...+.... .
T Consensus 65 ~~-~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 65 AD-GDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred Ee-eCCeEEEecCCCcEEEEeCCCCcEE-ecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence 44 5899999999999999999888643 32111 1222 333334899999998766899996 7822221111 1
Q ss_pred --CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705 133 --FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183 (351)
Q Consensus 133 --~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 183 (351)
...+-++-.++.+|+... +|.++.+|.++|+..
T Consensus 142 ~~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~ 176 (370)
T COG1520 142 SPYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLK 176 (370)
T ss_pred CeEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEE
Confidence 111223445777887742 357888888877653
No 179
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.03 E-value=0.6 Score=43.14 Aligned_cols=163 Identities=23% Similarity=0.189 Sum_probs=83.0
Q ss_pred cEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE--eec------CccccceEEEcCCCCEEEE
Q 018705 136 DVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV--LHE------GFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 136 ~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~------~~~~~ngi~~~~dg~~lyv 206 (351)
.+++++|| .+|++++. |.+ ..-|..+.-|-.||.+|-+.+. ... ....++-.+++.||+++||
T Consensus 40 ~~~~spdgk~~y~a~T~--~sR------~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETF--YSR------GTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp EEEE-TTSSEEEEEEEE--EEE------TTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEE
T ss_pred ceeECCCCCEEEEEEEE--Eec------cccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEE
Confidence 37789998 57776653 111 0112223347788988754322 221 1346778999999999999
Q ss_pred Eecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCC
Q 018705 207 CESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG 284 (351)
Q Consensus 207 ~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
.+..- ...+.+...+++-..+ ..|| --.++-..+.++..-|..+.
T Consensus 112 ~N~TPa~SVtVVDl~~~kvv~ei-~~PG-C~~iyP~~~~~F~~lC~DGs------------------------------- 158 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAKKVVGEI-DTPG-CWLIYPSGNRGFSMLCGDGS------------------------------- 158 (342)
T ss_dssp EEESSSEEEEEEETTTTEEEEEE-EGTS-EEEEEEEETTEEEEEETTSC-------------------------------
T ss_pred EccCCCCeEEEEECCCCceeeee-cCCC-EEEEEecCCCceEEEecCCc-------------------------------
Confidence 88765 4444443333332222 2333 11122222233443333221
Q ss_pred CCCceEEEEEECCCCeEEEEE---ECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEEeCCCCCC
Q 018705 285 SDAGARVVKVDGNDGKIIRDF---NDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDGPEP 346 (351)
Q Consensus 285 ~~~~~~v~~~~~~~g~~~~~~---~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~~~~~~ 346 (351)
-..+.+|. +||....- -+++..+ -..+.... .++++|+.|+ .+.++-+++.+.+|
T Consensus 159 ----l~~v~Ld~-~Gk~~~~~t~~F~~~~dp-~f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 159 ----LLTVTLDA-DGKEAQKSTKVFDPDDDP-LFEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSA 217 (342)
T ss_dssp ----EEEEEETS-TSSEEEEEEEESSTTTS--B-S--EEETTTTEEEEEBT-TSEEEEEEETTSSE
T ss_pred ----eEEEEECC-CCCEeEeeccccCCCCcc-cccccceECCCCeEEEEec-CCEEEEEeccCCcc
Confidence 13566777 78764321 1233221 12333333 3578998888 67799998888765
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.02 E-value=0.46 Score=44.24 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=63.5
Q ss_pred CccccceEEcCCCCEEEEeCCCCeEEEcCCC-eE-------------------EecCCCCCcccEEEccCCcEEEEeCCC
Q 018705 93 SQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-VE-------------------AIVPDASFTNDVIAASDGTLYFTVAST 152 (351)
Q Consensus 93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g-~~-------------------~l~~~~~~~n~l~~d~dG~ly~t~~~~ 152 (351)
...+ +++|+++|+|..+-...|.+.+++.+ .. .+......+.+++..+|+++.++.+.
T Consensus 66 ~aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~- 143 (434)
T KOG1009|consen 66 RAVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV- 143 (434)
T ss_pred ceeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec-
Confidence 3467 99999999999877667766665321 10 11111156888888898887776654
Q ss_pred ccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCC
Q 018705 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNED 202 (351)
Q Consensus 153 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~ 202 (351)
++.++.||...|++.... +...+++|++++|-.+
T Consensus 144 ----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 144 ----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred ----------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 456888888878765543 4567899999999775
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=1.5 Score=43.07 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=47.4
Q ss_pred CCccccccCCCCCCCc--Cc-cCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccc
Q 018705 23 SVSSLASLLSISKESS--SM-KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLG 98 (351)
Q Consensus 23 ~~~~~~~~~~~p~~~~--~l-~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~g 98 (351)
-|||..+..++|.+++ .. +.+-.+..|.-..-.+|.+++.+..|-.|..+|.+..|...+|+ ++++... +... .
T Consensus 369 niDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~-~ 446 (733)
T KOG0650|consen 369 NIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIR-S 446 (733)
T ss_pred cCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeE-E
Confidence 4888886666666442 11 11223333433446789999876777778889977777766774 3343222 2233 5
Q ss_pred eEEcCCC
Q 018705 99 LTTTKDG 105 (351)
Q Consensus 99 l~~d~~G 105 (351)
+++.+.+
T Consensus 447 vaw~P~~ 453 (733)
T KOG0650|consen 447 VAWNPLS 453 (733)
T ss_pred EEecCCC
Confidence 6666544
No 182
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.93 E-value=2 Score=42.71 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=64.8
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEEEEeecC-----Ccc-------ccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecC
Q 018705 63 KGALYTATRDGWVKYFILHNETLVNWKHID-----SQS-------LLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVP 129 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-----~~p-------~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~ 129 (351)
++.+|+++.++.|+.+|.++|+.. |.... ..+ ..++++ .++++|+++....++.++. +|......
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~l-W~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKEL-WKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCcee-eEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 789999999999999999898753 22111 011 113444 2578999988888999995 77332221
Q ss_pred CC---CCcccEEE---ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705 130 DA---SFTNDVIA---ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV 184 (351)
Q Consensus 130 ~~---~~~n~l~~---d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 184 (351)
.. .....+.- -.+|.+|+...+..+ ...|.|+-+|.++|+..-
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeeccccc------------CCCcEEEEEECCCCceeE
Confidence 11 00001111 125678887653211 125789999999887644
No 183
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.87 E-value=0.35 Score=45.61 Aligned_cols=177 Identities=15% Similarity=0.234 Sum_probs=93.4
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC-eEEecCC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-VEAIVPD 130 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-~~~l~~~ 130 (351)
.++++-.....+|.+..|..|-.|+.+.-.. +.+...+.-.. +|..-..+++.-+-...+..++++ +. ..++...
T Consensus 248 ~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~-~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~ 326 (479)
T KOG0299|consen 248 SSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL-GIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG 326 (479)
T ss_pred eeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee-eechhcccceEEeccccceeEEEeccccceeeeeCC
Confidence 4566653446677777777777776532211 11111112222 343334444443332344455552 33 3333333
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE---EeecC-------cc---ccceEEE
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEG-------FY---FANGIAL 197 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~---~~~~~-------~~---~~ngi~~ 197 (351)
..++..+++-.+-. |++- ..+|.|..|+...++.- .++.+ .. ..+++++
T Consensus 327 ~~sidcv~~In~~H-fvsG-----------------SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~ 388 (479)
T KOG0299|consen 327 EGSIDCVAFINDEH-FVSG-----------------SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV 388 (479)
T ss_pred CCCeeeEEEecccc-eeec-----------------cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEe
Confidence 34666666443332 2222 23567777765543321 11111 11 3567888
Q ss_pred cCCCCEEEEEecce---eEEeecCCCCceeEEec-cCCCCCCceEECCCCC-EEEEEec
Q 018705 198 SKNEDFVVVCESWK---RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS-FWIGLIK 251 (351)
Q Consensus 198 ~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~-lwva~~~ 251 (351)
-+..+ |+.+.++. |+|.........+++.+ .+.|+.+.+++..+|. +|++.+.
T Consensus 389 i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 389 IPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 88887 66665544 89977554445554433 4667888899999997 8888764
No 184
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.83 E-value=0.25 Score=49.41 Aligned_cols=143 Identities=22% Similarity=0.193 Sum_probs=92.2
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC---eEEecC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG---VEAIVP 129 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g---~~~l~~ 129 (351)
-++.++|++..|-++.-|..+-.+-.++=++..-.-...-|...|.+.+|+.|.++-+...-++++- =| ...++.
T Consensus 512 L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence 4778887777778888887666555544444221111122433777779999999888877888882 34 333443
Q ss_pred CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEeecCccccceEEEcCCCCEEEEEe
Q 018705 130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~~~ngi~~~~dg~~lyv~~ 208 (351)
+ ..+..+.+-|+-.++||.+- ++.+-+||...= .++.+.........++.+|+|.+++-++
T Consensus 592 d-DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 592 D-DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred c-CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 3 56788888898889998864 466888876532 2333344455677889999998554454
Q ss_pred cce--eEEe
Q 018705 209 SWK--RYWL 215 (351)
Q Consensus 209 ~~~--~~~i 215 (351)
.+. |+|=
T Consensus 654 hD~sIRlwE 662 (888)
T KOG0306|consen 654 HDKSIRLWE 662 (888)
T ss_pred CCceeEeee
Confidence 444 6663
No 185
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=2.7 Score=43.31 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=88.2
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEe
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAI 127 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l 127 (351)
..-+++|.|..-.+.++.+.|.|..||-+-+.. .+|....+... |++|.+.+-|||+....-.++++. +. ..++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 456899998888888899999999998755543 34444555556 999999999999876666677763 22 2333
Q ss_pred cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEE
Q 018705 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv 206 (351)
.....++..+.+.+.= =||-..+ .+-.|..||-.+++...+. ..-.+..+..|+|.++ +.|
T Consensus 90 ~GHlDYVRt~~FHhey-PWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIV 151 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEY-PWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIV 151 (1202)
T ss_pred ccccceeEEeeccCCC-ceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEE
Confidence 3333444444444432 2221111 1235666665555443333 3345666778999887 555
Q ss_pred E-ecce--eEE
Q 018705 207 C-ESWK--RYW 214 (351)
Q Consensus 207 ~-~~~~--~~~ 214 (351)
+ +.+. |.|
T Consensus 152 SaSLDQTVRVW 162 (1202)
T KOG0292|consen 152 SASLDQTVRVW 162 (1202)
T ss_pred EecccceEEEE
Confidence 4 4444 776
No 186
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.81 E-value=2 Score=42.77 Aligned_cols=133 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCCCCCcccEE
Q 018705 62 SKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDASFTNDVI 138 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~~~~~n~l~ 138 (351)
+++++.+|..|..|.++...+... ..+.....+.. ++..+.++.+. +.+.....++++.| ...+......+..++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~i-SgSWD~TakvW~~~~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLI-SGSWDSTAKVWRIGELVYSLQGHTASVWAVA 147 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceE-ecccccceEEecchhhhcccCCcchheeeee
Confidence 456788888888888887644332 12233445677 88888888844 44445677778644 444433334555666
Q ss_pred EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEee
Q 018705 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLK 216 (351)
Q Consensus 139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~ 216 (351)
.=+++ .|+|-+. +..|..|..+ ...+.+........|+++-+++.++ -++.++ ++|-.
T Consensus 148 ~l~e~-~~vTgsa-----------------DKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 148 SLPEN-TYVTGSA-----------------DKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFL-SCSNDGSIRLWDL 207 (745)
T ss_pred ecCCC-cEEeccC-----------------cceeeeccCC-chhhhhccchhheeeeEEecCCCeE-eecCCceEEEEec
Confidence 66666 7888765 2346666543 2334444445567788888887633 333333 66643
No 187
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.78 E-value=1.7 Score=41.25 Aligned_cols=237 Identities=15% Similarity=0.106 Sum_probs=118.4
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEc-CCCCEEEEeCCCCeEEEcC--CC-eEEecCC
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE--EG-VEAIVPD 130 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~~--~g-~~~l~~~ 130 (351)
++++++++..+.+|..+..|..|+.++.+- +.+....+... +++|- ...+||.+.....+-..+- -. ++++...
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 678885555555666777788998877643 34444445566 88885 3348998876654333332 22 4444332
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEec
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
...+-+|.+-..++.. |.... ..+-+||++ |+ +.+.+. .+..++.++++=.+.+ +...+.
T Consensus 286 qd~v~~IdaL~reR~v-tVGgr--------------DrT~rlwKi-~e--esqlifrg~~~sidcv~~In~~H-fvsGSd 346 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCV-TVGGR--------------DRTVRLWKI-PE--ESQLIFRGGEGSIDCVAFINDEH-FVSGSD 346 (479)
T ss_pred ccceeeechhcccceE-Eeccc--------------cceeEEEec-cc--cceeeeeCCCCCeeeEEEecccc-eeeccC
Confidence 2334444433334322 22110 012256666 22 333333 3345788999877765 434333
Q ss_pred ce--eEEeecCCCCceeEEeccCCCCCCceEEC---CCCCEEEEEecC--CchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705 210 WK--RYWLKGDRAGILDAFIENLPGGPDNINLA---PDGSFWIGLIKM--NQTGVRAIQKCREKWELLDAYPGLISLLLP 282 (351)
Q Consensus 210 ~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d---~~G~lwva~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
++ .+|-.- ....+|... .+.++.-+ -+++.|++.... .+.++ +.
T Consensus 347 nG~IaLWs~~---KKkplf~~~---~AHgv~~~~~~~~~~~Witsla~i~~sdL~---as-------------------- 397 (479)
T KOG0299|consen 347 NGSIALWSLL---KKKPLFTSR---LAHGVIPELDPVNGNFWITSLAVIPGSDLL---AS-------------------- 397 (479)
T ss_pred CceEEEeeec---ccCceeEee---ccccccCCccccccccceeeeEecccCceE---Ee--------------------
Confidence 33 455321 122333322 12222222 234578886431 11111 00
Q ss_pred CCCCCce--EEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCCCC
Q 018705 283 MGSDAGA--RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGPEP 346 (351)
Q Consensus 283 ~~~~~~~--~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~~~ 346 (351)
+.-.| .+.++.+ +-+.+.-+.. -....+++++++. +..+++|.....+++|.....+++
T Consensus 398 --GS~~G~vrLW~i~~-g~r~i~~l~~--ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~~ 460 (479)
T KOG0299|consen 398 --GSWSGCVRLWKIED-GLRAINLLYS--LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSGK 460 (479)
T ss_pred --cCCCCceEEEEecC-Cccccceeee--cccccEEEEEEEccCCCEEEEecccccccceeeEeeccc
Confidence 11111 3444454 4333332221 0123467777743 446999999999999998776654
No 188
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.69 E-value=1 Score=42.50 Aligned_cols=131 Identities=14% Similarity=0.192 Sum_probs=64.3
Q ss_pred eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEE--c--CCCC---EEEEeCC----C--CeEEEcC-CC-eEEecC
Q 018705 65 ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT--T--KDGG---VILCDNE----K--GLLKVTE-EG-VEAIVP 129 (351)
Q Consensus 65 ~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~--d--~~G~---L~v~d~~----~--gl~~~~~-~g-~~~l~~ 129 (351)
++..+..+++++.+|.+...++.+ ..++++ .+.+ + -.|+ |.++... + .++++++ +| ++.+.+
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~--~~Gr~N-NVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSL--PVGRPN-NVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EE-EEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcCCCcEEEee--cCCCcc-eeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 333445678899999954444443 234443 3222 1 1232 3344322 1 3677775 56 655432
Q ss_pred C-------CCCcccEEEc--c-CCcEEEEeCCCccCCcccccccccccCCceEEEE---eCCCCeEEE----eecCcccc
Q 018705 130 D-------ASFTNDVIAA--S-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY---DPKLKETTV----LHEGFYFA 192 (351)
Q Consensus 130 ~-------~~~~n~l~~d--~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~---d~~~~~~~~----~~~~~~~~ 192 (351)
. ...++++|.- + +|.+|+-... +.|.+.+| +...+.+.. -.....-+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~ 210 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVGSQP 210 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-E
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCCCcc
Confidence 1 1457788863 3 4666654322 13443333 233343211 11223457
Q ss_pred ceEEEcCCCCEEEEEecceeEE
Q 018705 193 NGIALSKNEDFVVVCESWKRYW 214 (351)
Q Consensus 193 ngi~~~~dg~~lyv~~~~~~~~ 214 (351)
.|++.+....+||++|...-+|
T Consensus 211 EGCVVDDe~g~LYvgEE~~GIW 232 (381)
T PF02333_consen 211 EGCVVDDETGRLYVGEEDVGIW 232 (381)
T ss_dssp EEEEEETTTTEEEEEETTTEEE
T ss_pred eEEEEecccCCEEEecCccEEE
Confidence 8999998888999999877333
No 189
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.57 E-value=0.58 Score=46.77 Aligned_cols=143 Identities=16% Similarity=0.249 Sum_probs=90.3
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEec
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIV 128 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~ 128 (351)
-.+++++|++..|++....+-+..|...+|++. .|......|...+++|+.|.|.......+.++++. .+ ...+.
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fk 144 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFK 144 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEec
Confidence 347788888888999888887777787788653 33332333433899999997776666668888874 44 45555
Q ss_pred CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--EEeecCccccceEEEcCCCCEEEE
Q 018705 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~ngi~~~~dg~~lyv 206 (351)
.....+..+.+.|+-+.|+= ..+..++.+..||..++.. ..+....+...++++++|+..++.
T Consensus 145 G~gGvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 145 GHGGVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred CCCceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEE
Confidence 53355666777766432211 1223467788888765443 112233456778999999885554
Q ss_pred Eecce
Q 018705 207 CESWK 211 (351)
Q Consensus 207 ~~~~~ 211 (351)
...+.
T Consensus 210 ~~RDk 214 (775)
T KOG0319|consen 210 VGRDK 214 (775)
T ss_pred eccCc
Confidence 44444
No 190
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.56 E-value=0.54 Score=43.89 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=73.4
Q ss_pred EEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC--C-C-eEEecC-CC---CCcccEEE
Q 018705 69 ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE--E-G-VEAIVP-DA---SFTNDVIA 139 (351)
Q Consensus 69 ~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~--~-g-~~~l~~-~~---~~~n~l~~ 139 (351)
|-.|+.|..||........-...++... .+....+| .|..+. .+..+.+.+ + + ...+.. +. ...+-+++
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsss-RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSS-RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred cccccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeec-CCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 4457778888865554443334455655 77777777 455553 444444432 2 2 333322 22 45677889
Q ss_pred ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc---ccceEEEcCCCCEEEEEec
Q 018705 140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY---FANGIALSKNEDFVVVCES 209 (351)
Q Consensus 140 d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~---~~ngi~~~~dg~~lyv~~~ 209 (351)
+|+|..-.+-++ +|+|+.|+..+++++.....-. ..+.+++++-|..|.-++-
T Consensus 396 Spd~~YvaAGS~-----------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 396 SPDGSYVAAGSA-----------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred CCCCceeeeccC-----------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 999865554444 6899999999998876654322 2356778887765544443
No 191
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.49 E-value=0.4 Score=44.07 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=91.5
Q ss_pred CCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--
Q 018705 49 GCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-- 123 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-- 123 (351)
|...|-.++|-+|.. ..+..|..||.|..||..+.. ...+....+-.. ||+++....+.+++.. .++++. +|
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdDK--tvK~wk~~~~p 140 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDDK--TVKQWKIDGPP 140 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCCc--ceeeeeccCCc
Confidence 444556677777544 457788999999999985432 334444445566 9999986567776643 344443 44
Q ss_pred eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-EEEeecCccccceEEEcCCCC
Q 018705 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNED 202 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~~~~~~ngi~~~~dg~ 202 (351)
.+++... ....+|.-...+.++.|... .+-.||..-.. ++.+.-+......+.++|-+.
T Consensus 141 ~~tilg~-s~~~gIdh~~~~~~FaTcGe-------------------~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 141 LHTILGK-SVYLGIDHHRKNSVFATCGE-------------------QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred ceeeecc-ccccccccccccccccccCc-------------------eeeecccccCCccceeecCCCceeEEecCCCcc
Confidence 3333222 22233332223344444332 35555543111 122222333335677778776
Q ss_pred EEEEEe-cceeEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 203 FVVVCE-SWKRYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 203 ~lyv~~-~~~~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.+..+. +++.+.+-+...+. ....+ +..-++.|++.+++..+++...
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred hheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccc
Confidence 454433 33322222211111 11111 2234688899988877776543
No 192
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.43 E-value=0.79 Score=42.19 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=91.3
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-- 123 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-- 123 (351)
|+-.+-.++++-|.++.+.....|..|..|+.++|- +.++........ -+++..||.|+.+-.....++++. ++
T Consensus 191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr-~v~v~~DGti~As~s~dqtl~vW~~~t~~~ 269 (406)
T KOG0295|consen 191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR-MVRVNQDGTIIASCSNDQTLRVWVVATKQC 269 (406)
T ss_pred CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE-EEEecCCeeEEEecCCCceEEEEEeccchh
Confidence 334455688888777777777788889999987773 344443334445 677788999988766666667763 33
Q ss_pred eEEecCCCCCcccEEEccCCc---EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcC
Q 018705 124 VEAIVPDASFTNDVIAASDGT---LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSK 199 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~dG~---ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~ 199 (351)
+..+.....-+..+++.|.-. +....++.. -..-+..+..++.+-.||..++..-. +........|++|+|
T Consensus 270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~-----~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 270 KAELREHEHPVECIAWAPESSYPSISEATGSTN-----GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP 344 (406)
T ss_pred hhhhhccccceEEEEecccccCcchhhccCCCC-----CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC
Confidence 233332222333444443321 111111000 00011123345678888988886433 334455677899999
Q ss_pred CCCEEEEEecce--eEE
Q 018705 200 NEDFVVVCESWK--RYW 214 (351)
Q Consensus 200 dg~~lyv~~~~~--~~~ 214 (351)
.|++|.-+..++ |.|
T Consensus 345 ~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVW 361 (406)
T ss_pred CCeEEEEEecCCcEEEE
Confidence 999766544444 555
No 193
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.43 E-value=2.5 Score=40.26 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=79.7
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEec
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIV 128 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~ 128 (351)
.-.+++|+.++..|-+|..+|.+..|+...+....+....+ |.+.+...++|+.+++....+...++ . .| .+.+.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKG-PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCC-ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 45688998555667789999988888874444444433334 44488999999877665555555554 3 56 33332
Q ss_pred CCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCce--EEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705 129 PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQ--LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly 205 (351)
-. ..| .+.++-.+ .=+++.+. .+. |++++.++ -+..+...-...|+|.++|.|..|-
T Consensus 316 ~~-s~~-~lDVdW~~~~~F~ts~t-----------------d~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLa 375 (524)
T KOG0273|consen 316 FH-SAP-ALDVDWQSNDEFATSST-----------------DGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLA 375 (524)
T ss_pred ec-cCC-ccceEEecCceEeecCC-----------------CceEEEEEecCCC-cceeeecccCceEEEEECCCCceEE
Confidence 22 222 22233211 11222211 344 45555432 2333344445678899999998544
Q ss_pred EEecce--eEEe
Q 018705 206 VCESWK--RYWL 215 (351)
Q Consensus 206 v~~~~~--~~~i 215 (351)
-++.+. ++|-
T Consensus 376 S~SdD~TlkiWs 387 (524)
T KOG0273|consen 376 SCSDDGTLKIWS 387 (524)
T ss_pred EecCCCeeEeee
Confidence 444444 8885
No 194
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.42 E-value=1.7 Score=41.23 Aligned_cols=204 Identities=14% Similarity=0.165 Sum_probs=105.9
Q ss_pred CccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705 93 SQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (351)
Q Consensus 93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~ 168 (351)
+... .++-++.|.+.++..-.|-+.++ .+| ..++......+..|.+..||..+||.+.
T Consensus 82 g~v~-al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk----------------- 143 (476)
T KOG0646|consen 82 GPVH-ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK----------------- 143 (476)
T ss_pred ccee-eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC-----------------
Confidence 3345 78888999877776445545555 366 5555444567888999999998888754
Q ss_pred CceEEEEeC------CC-CeE---EEeecCccccceEEEcCCC--CEEEEEecce--eEEeecCCCCceeEEeccCCCCC
Q 018705 169 YGQLRKYDP------KL-KET---TVLHEGFYFANGIALSKNE--DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGP 234 (351)
Q Consensus 169 ~g~l~~~d~------~~-~~~---~~~~~~~~~~ngi~~~~dg--~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~p 234 (351)
+|.|..|.. .. +.+ ..+.+.--...-+.++..| .+||-++.++ ++|-- ..+..-.-+ ..|..+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl--S~g~LLlti-~fp~si 220 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL--SLGVLLLTI-TFPSSI 220 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe--ccceeeEEE-ecCCcc
Confidence 445554421 10 011 1111110001112222221 2466666565 44421 122221111 234456
Q ss_pred CceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCce-EEEEEECCCCeEEEEEECCCCCc
Q 018705 235 DNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA-RVVKVDGNDGKIIRDFNDPDATY 312 (351)
Q Consensus 235 d~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~g~~~~~~~~~~g~~ 312 (351)
..+++|+.++ +|+|+..+....+.+... +. .+.+ ..-.+++ .+..+..+.+..+.
T Consensus 221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~-----------~~----------~~~~v~~k~~~~-~~t~~~~~~Gh~~~- 277 (476)
T KOG0646|consen 221 KAVALDPAERVVYIGTEEGKIFQNLLFKL-----------SG----------QSAGVNQKGRHE-ENTQINVLVGHENE- 277 (476)
T ss_pred eeEEEcccccEEEecCCcceEEeeehhcC-----------Cc----------cccccccccccc-ccceeeeeccccCC-
Confidence 7788998774 888876554322211000 00 0000 1123355 66667777665542
Q ss_pred ccceeEEEE-ECCEEEEEecCCCeEEEEeC
Q 018705 313 ISFVTSAAE-FDGNLYLASLQSNFIGILPL 341 (351)
Q Consensus 313 ~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~ 341 (351)
..++.+.. .+|.|.+.....+-+-+.+.
T Consensus 278 -~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 278 -SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 46777764 47787777776666766663
No 195
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.42 E-value=1.1 Score=45.28 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=63.6
Q ss_pred ceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceE
Q 018705 98 GLTTTKDGGVILCDNEKGLLKVTE---EG-VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQL 172 (351)
Q Consensus 98 gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l 172 (351)
.|...+++-|.-+.. ...+|++. +. +.++... .++.+|++.| |.+.+++-+- +|.+
T Consensus 374 DlSWSKn~fLLSSSM-DKTVRLWh~~~~~CL~~F~Hn-dfVTcVaFnPvDDryFiSGSL-----------------D~Kv 434 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSM-DKTVRLWHPGRKECLKVFSHN-DFVTCVAFNPVDDRYFISGSL-----------------DGKV 434 (712)
T ss_pred ecccccCCeeEeccc-cccEEeecCCCcceeeEEecC-CeeEEEEecccCCCcEeeccc-----------------ccce
Confidence 455555555554443 45666662 33 6666655 6899999999 5678887654 4666
Q ss_pred EEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 173 RKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 173 ~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
..|+-...++..+.+.-.....+++.|||+..+|+...+
T Consensus 435 RiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred EEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEecc
Confidence 666655456655544445567799999999888888777
No 196
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.29 E-value=0.4 Score=49.65 Aligned_cols=95 Identities=18% Similarity=0.108 Sum_probs=66.0
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCC---C-eEEec
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE---G-VEAIV 128 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~---g-~~~l~ 128 (351)
--+++|+|++-.+-....|+.|..|+..+.+. +++....+.+- |+.+||-|+.+.+....+.+++++. | .+.+.
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 34788997444445566799999999766533 44455556677 9999999999998888888888752 3 33333
Q ss_pred CCC------CCcccEEEccCCcEEEEe
Q 018705 129 PDA------SFTNDVIAASDGTLYFTV 149 (351)
Q Consensus 129 ~~~------~~~n~l~~d~dG~ly~t~ 149 (351)
... .+..-+..+|||.+..+.
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecch
Confidence 221 456667788999766554
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.53 Score=43.87 Aligned_cols=177 Identities=16% Similarity=0.136 Sum_probs=86.6
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEE-cCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFI-LHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP 129 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d-~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~ 129 (351)
..+++..++..+-++..||.+..|+ |.....-.......... .|.|.+||.+.+.-... ..+++ .+| +....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 4566664445666676777666666 42222111122334566 89999999888776655 44444 255 333321
Q ss_pred CC--CCcccEEEccCC---cEEEEeCCCccCCcccccccccccCCceEEEEeC------CCCeEEEeecCccccceEEEc
Q 018705 130 DA--SFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP------KLKETTVLHEGFYFANGIALS 198 (351)
Q Consensus 130 ~~--~~~n~l~~d~dG---~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~------~~~~~~~~~~~~~~~ngi~~~ 198 (351)
.. .....+.+..|+ .+++..... +.+++..++. +-.+.+...........+++|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 11 222223333333 566665431 1222322221 112222333344456678999
Q ss_pred CCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEE
Q 018705 199 KNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIG 248 (351)
Q Consensus 199 ~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 248 (351)
.||+++-++...+ ..-+...+......+.....+...++.+.+|-+.-..
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 9999888877666 2111111222222222112234455666666554444
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.23 E-value=0.56 Score=43.18 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=59.9
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecc
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESW 210 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~ 210 (351)
.-+..+...+||..|++.+. .+..+..||+++++...+. .++....-+.+||||+.++.+..+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 45667778889999988763 1346999999998876665 344444457899999988777777
Q ss_pred e--eEEeecCCCCceeEEeccCCCCCCceEECCCCC
Q 018705 211 K--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS 244 (351)
Q Consensus 211 ~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~ 244 (351)
. ++|-... .-..+... -.+|....-+.+++|+
T Consensus 260 avfrlw~e~q-~wt~erw~-lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 260 AVFRLWQENQ-SWTKERWI-LGSGRVQTACWSPCGS 293 (445)
T ss_pred ceeeeehhcc-cceeccee-ccCCceeeeeecCCCC
Confidence 6 6663211 11111111 1233444556778886
No 199
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.15 E-value=1.9 Score=39.18 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=34.4
Q ss_pred cccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 190 YFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 190 ~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
..|--++++|+|+.|-++.-...-|+...+....+.+-+-..+-..+|.++++|++.++++.
T Consensus 332 ~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 45667899999995544433323333322211122221112234567899999998887764
No 200
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.12 E-value=2.6 Score=42.36 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=59.5
Q ss_pred CCc-eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCE--EEEeCCCCeEEEcC--CC---
Q 018705 53 HPE-DVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGV--ILCDNEKGLLKVTE--EG--- 123 (351)
Q Consensus 53 ~pe-~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L--~v~d~~~gl~~~~~--~g--- 123 (351)
+|. -++++|.++.+-++..+|++..||-..+...+ +...++... .+.|.++-+. .++....+.++++. ++
T Consensus 106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc 184 (775)
T KOG0319|consen 106 APVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC 184 (775)
T ss_pred CCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchH
Confidence 444 45888777777788999999999986665443 333455566 7888776543 33333345555542 23
Q ss_pred eEEecCCCCCcccEEEccCCcEEEEeC
Q 018705 124 VEAIVPDASFTNDVIAASDGTLYFTVA 150 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~ 150 (351)
..++........++++.+|+.-.++.+
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~ls~~ 211 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELLSVG 211 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEEEec
Confidence 112222236788889988886555544
No 201
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.04 E-value=2.6 Score=38.25 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=32.0
Q ss_pred ceEEcCCCCEEEEeC-CCCeEEEcC-C-C-eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 98 GLTTTKDGGVILCDN-EKGLLKVTE-E-G-VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 98 gl~~d~~G~L~v~d~-~~gl~~~~~-~-g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
.+.|++-|.+....- .+.++.++- + + .+.+.....-+.+++.++||+..+|.+.
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~ 85 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR 85 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC
Confidence 566666665443332 233444442 2 2 3333333356788999999999998765
No 202
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.02 E-value=0.17 Score=45.54 Aligned_cols=133 Identities=17% Similarity=0.298 Sum_probs=79.3
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE----EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEe--
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETL----VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAI-- 127 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~----~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l-- 127 (351)
.++.|.|.+..|..+..|+.|-.+|...-.. +.+. ...|...|.|.|.|....+....-+.++.. +-.+-+
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 4677887777777788899888888633222 2221 123333899999997554443444444432 111222
Q ss_pred --cCCC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Ee--ecCccccceEEEcCC
Q 018705 128 --VPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VL--HEGFYFANGIALSKN 200 (351)
Q Consensus 128 --~~~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~--~~~~~~~ngi~~~~d 200 (351)
++.. ..++++-.++.|++|+|.+. +|.|-.||.-+++-. .+ +.+........|+++
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN 316 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence 1211 67888999999999999865 577888886554421 11 122333445678888
Q ss_pred CCEEEE
Q 018705 201 EDFVVV 206 (351)
Q Consensus 201 g~~lyv 206 (351)
|+++.-
T Consensus 317 ~kyiLs 322 (430)
T KOG0640|consen 317 GKYILS 322 (430)
T ss_pred CeEEee
Confidence 874433
No 203
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.88 E-value=0.51 Score=45.33 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE--EE---eec-CCccccceEEcCCCCEEEEeCCCCeEEEcC-
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV--NW---KHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTE- 121 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~--~~---~~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~- 121 (351)
+....|..-+|+|++..+-.+..||.|..|+...-.+. .. .+. +.... .|.|..+|+...+-...+.++++.
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It-si~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT-SISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCcee-EEEeccccchhhhccCCCceeeeec
Confidence 44556778899977667677889999999985221111 11 122 23445 899999999888877777777763
Q ss_pred CC-eEEe---cCCC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC
Q 018705 122 EG-VEAI---VPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK 180 (351)
Q Consensus 122 ~g-~~~l---~~~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~ 180 (351)
.. .+.+ ..-. .--.+.+++||..|.+|-++.. .+...|.|+.||+.+-
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~-----------~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP-----------NGMTAGTLFFFDRMTL 447 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEeccccc-----------CCCCCceEEEEeccce
Confidence 22 2221 1111 2334678999999999876521 1123457888887643
No 204
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.88 E-value=0.71 Score=47.93 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=67.7
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCC----------C---eEEE------EeecCCccccceEEcCCCCEEEEe
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHN----------E---TLVN------WKHIDSQSLLGLTTTKDGGVILCD 111 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~----------g---~~~~------~~~~~~~p~~gl~~d~~G~L~v~d 111 (351)
...-.|+.|.+++..|+.|+.|.-|+.|.... | .++. +....+... .+..++++.+.+.-
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSV 147 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEe
Confidence 34456778998888899999998777776542 1 0111 223334566 78889999888876
Q ss_pred CCCCeEEEc-C-CC--eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 112 NEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 112 ~~~gl~~~~-~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
+...-+.++ . +. .+++......+-++.+||-|+.+.+.+.
T Consensus 148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd 191 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD 191 (942)
T ss_pred cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC
Confidence 555444444 2 33 5666665678999999999987777654
No 205
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.83 E-value=3.5 Score=38.58 Aligned_cols=82 Identities=9% Similarity=0.099 Sum_probs=45.1
Q ss_pred CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc-eeEEeecCCCCceeEEeccCCC-CCCceEECCCCCEE
Q 018705 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-KRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSFW 246 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~lw 246 (351)
+..|..||..||+...-.+.-.....+.|+.||. ++++... +++++-++..++.........| -|....+-.+|.+.
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 5579999998887654444223344688999998 5554443 3666656555443211111112 23334455677755
Q ss_pred EEEec
Q 018705 247 IGLIK 251 (351)
Q Consensus 247 va~~~ 251 (351)
.+.+.
T Consensus 232 tTGfs 236 (472)
T KOG0303|consen 232 TTGFS 236 (472)
T ss_pred eeccc
Confidence 55443
No 206
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.73 E-value=0.051 Score=47.23 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=65.2
Q ss_pred CCcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE--------EEEeecCC-ccccceEEcCCCC
Q 018705 36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL--------VNWKHIDS-QSLLGLTTTKDGG 106 (351)
Q Consensus 36 ~~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~--------~~~~~~~~-~p~~gl~~d~~G~ 106 (351)
.|+-....++|..+....=..|+++ ..|.||.-..+|.++|...-+... +.+...+- ... .+.++++|.
T Consensus 65 ~~~~~~~~~~Ig~g~W~~F~~i~~d-~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~Gv 142 (229)
T PF14517_consen 65 GNTWDSGSKQIGDGGWNSFKFIFFD-PTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGV 142 (229)
T ss_dssp T--HHHH-EEEE-S-GGG-SEEEE--TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-
T ss_pred cccccccCcccccCcccceeEEEec-CCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCcc
Confidence 3344455678888733333499999 689999989999998886422211 22212222 234 688899999
Q ss_pred EEEEeCCCCeEEEc-CCC-------eEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEe
Q 018705 107 VILCDNEKGLLKVT-EEG-------VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176 (351)
Q Consensus 107 L~v~d~~~gl~~~~-~~g-------~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d 176 (351)
||+.+..+.+++.. +++ .+.+... -..+--|...++|.||..++ +|.|||+.
T Consensus 143 LY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~ 204 (229)
T PF14517_consen 143 LYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGR 204 (229)
T ss_dssp EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES
T ss_pred EEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccC
Confidence 99999666577774 322 1222211 13466688889999998754 47899887
Q ss_pred CCC
Q 018705 177 PKL 179 (351)
Q Consensus 177 ~~~ 179 (351)
+.+
T Consensus 205 ~p~ 207 (229)
T PF14517_consen 205 PPQ 207 (229)
T ss_dssp ---
T ss_pred Ccc
Confidence 654
No 207
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.69 E-value=2.9 Score=37.10 Aligned_cols=97 Identities=8% Similarity=0.044 Sum_probs=57.3
Q ss_pred CccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705 93 SQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (351)
Q Consensus 93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~ 168 (351)
.||++-+.++.+|.|.++-......-++ .+| +-++......+..+.+|.+-...+|-+ .
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS-----------------A 72 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS-----------------A 72 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc-----------------c
Confidence 4666578888999877655444333333 244 333333224455555555444444433 3
Q ss_pred CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEE
Q 018705 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv 206 (351)
+..+-.||-++|+.....+......++.|+.+|+.+.+
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~ 110 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILA 110 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEE
Confidence 45677888888876655555555678889999984433
No 208
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=6.3 Score=40.83 Aligned_cols=129 Identities=12% Similarity=0.258 Sum_probs=80.7
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCCeEEe
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAI 127 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g~~~l 127 (351)
|....-.++.++|..+.+.....|+.|..||.... .++.+.....+=. -++..|..+||.+.+.+|+..+--+
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkle----- 321 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLE----- 321 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEc-----
Confidence 45566779999987777778888999999997433 2456666666666 7888899999999888776554311
Q ss_pred cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cC----ccccceEEEcCCC
Q 018705 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EG----FYFANGIALSKNE 201 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~----~~~~ngi~~~~dg 201 (351)
.-.-..++..++-+|+-+. .|..||..+.+-..+. .. ...|..+..+|..
T Consensus 322 ----RErpa~~v~~n~LfYvkd~--------------------~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae 377 (1202)
T KOG0292|consen 322 ----RERPAYAVNGNGLFYVKDR--------------------FIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAE 377 (1202)
T ss_pred ----ccCceEEEcCCEEEEEccc--------------------eEEeeeccccccceeEeccCCCcccCCcceeeecccc
Confidence 0122335555555666532 4666665542222221 11 1235567777877
Q ss_pred CEEEEE
Q 018705 202 DFVVVC 207 (351)
Q Consensus 202 ~~lyv~ 207 (351)
+.+.++
T Consensus 378 ~~vlic 383 (1202)
T KOG0292|consen 378 NAVLIC 383 (1202)
T ss_pred CeEEEE
Confidence 755555
No 209
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=94.65 E-value=2.9 Score=36.92 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=74.9
Q ss_pred eEEEEeCCCCeEEEeec-------CccccceEEEcCCC---C-EEEEEecce---eEEeecCCCCc-----eeEEeccCC
Q 018705 171 QLRKYDPKLKETTVLHE-------GFYFANGIALSKNE---D-FVVVCESWK---RYWLKGDRAGI-----LDAFIENLP 231 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~~-------~~~~~ngi~~~~dg---~-~lyv~~~~~---~~~i~~~~~~~-----~~~~~~~~~ 231 (351)
.+|.+||+++.++.+.+ ..+.+.|+++..+. . +++|+.-.+ .|.+.+...|. ++-| .++
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~~ 204 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF--KIP 204 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee--ecC
Confidence 36777887766655433 35668898886543 3 455555444 56665322222 2222 133
Q ss_pred CCCCceEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCC
Q 018705 232 GGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA 310 (351)
Q Consensus 232 g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g 310 (351)
....|+..|. -|.||++.......-+..-......++++.++...-. + ...-.+.-+.+-| +|+-.-...+ +|
T Consensus 205 tQTEG~VaDdEtG~LYIaeEdvaiWK~~Aep~~G~~g~~idr~~d~~~-L---tdDvEGltiYy~p-nGkGYL~aSS-QG 278 (364)
T COG4247 205 TQTEGMVADDETGFLYIAEEDVAIWKYEAEPNRGNTGRLIDRIKDLSY-L---TDDVEGLTIYYGP-NGKGYLLASS-QG 278 (364)
T ss_pred CcccceeeccccceEEEeeccceeeecccCCCCCCccchhhhhcCchh-h---cccccccEEEEcC-CCcEEEEEec-CC
Confidence 3456776654 4899999754322111111112233444444333110 0 1122345566777 7775433332 33
Q ss_pred CcccceeEEEEE-CCEEEEEec
Q 018705 311 TYISFVTSAAEF-DGNLYLASL 331 (351)
Q Consensus 311 ~~~~~~~~~~~~-~g~L~ig~~ 331 (351)
. ...++... ++.=|+|++
T Consensus 279 n---Ntya~y~ReG~N~YVgsF 297 (364)
T COG4247 279 N---NTYAAYTREGNNDYVGSF 297 (364)
T ss_pred C---ceEEEEEeeCCCceEEEE
Confidence 2 33444443 456788775
No 210
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.63 E-value=5.7 Score=40.14 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=113.9
Q ss_pred eEEEEEcCCEEEEEEcCCCeEEEEeec---CCccccceEEcCCCCE--EEEe-------CCCCeEEEcCCC-eEEecCCC
Q 018705 65 ALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGV--ILCD-------NEKGLLKVTEEG-VEAIVPDA 131 (351)
Q Consensus 65 ~lyv~~~~g~I~~~d~~~g~~~~~~~~---~~~p~~gl~~d~~G~L--~v~d-------~~~gl~~~~~~g-~~~l~~~~ 131 (351)
.+|+- .+|++.+++. +..+..... ...+. ..++.++|+. |+.. ....|+..+..+ .+.+...
T Consensus 322 ~~~~v-~~G~l~~~~~--~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g- 396 (591)
T PRK13616 322 GLHAL-VDGSLVSVDG--QGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG- 396 (591)
T ss_pred cceEE-ECCeEEEecC--CCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-
Confidence 45543 3788888864 223322211 12344 6777888854 3331 112344444444 3333222
Q ss_pred CCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc
Q 018705 132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW 210 (351)
Q Consensus 132 ~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~ 210 (351)
.....-.+++|| .||+.....+. ..+......+.++..+.+.++.+. ........+.+|+||+++.+...+
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g 468 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGG 468 (591)
T ss_pred CCCCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECC
Confidence 124445789996 68877532110 001111234567777666565543 111246678999999977765433
Q ss_pred eeEEe---ecCCCCceeE-----EeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705 211 KRYWL---KGDRAGILDA-----FIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP 282 (351)
Q Consensus 211 ~~~~i---~~~~~~~~~~-----~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
++++ .....|..++ +...+...+..+..-.++.|.++....
T Consensus 469 -~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~------------------------------ 517 (591)
T PRK13616 469 -KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP------------------------------ 517 (591)
T ss_pred -EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC------------------------------
Confidence 3333 1111233222 222233333556777788887774321
Q ss_pred CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEe
Q 018705 283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP 340 (351)
Q Consensus 283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~ 340 (351)
...+.+++. +|.....+ +.+.....+.++....+.+|+++. +++..+.
T Consensus 518 -----~~~v~~v~v-DG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~--~g~~~l~ 565 (591)
T PRK13616 518 -----EHPVWYVNL-DGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDA--RAVLQLP 565 (591)
T ss_pred -----CCceEEEec-CCcccccc--CCCCccCceEEEecCCceEEEEcC--CceEEec
Confidence 124677787 77654433 223233445566555678998874 5555444
No 211
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=2.3 Score=38.20 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=36.9
Q ss_pred CCccccceEEcCCCCEEEEeCCC-------------------CeEEEc-CCC----eEEecCC--CCCcccEEEccCCcE
Q 018705 92 DSQSLLGLTTTKDGGVILCDNEK-------------------GLLKVT-EEG----VEAIVPD--ASFTNDVIAASDGTL 145 (351)
Q Consensus 92 ~~~p~~gl~~d~~G~L~v~d~~~-------------------gl~~~~-~~g----~~~l~~~--~~~~n~l~~d~dG~l 145 (351)
+--|+ -+.+-+||++.+..+++ .++.++ .+| +++++.. ...+..+++++||++
T Consensus 161 GiGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv 239 (366)
T COG3490 161 GIGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV 239 (366)
T ss_pred CcCcc-eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence 34577 78888999877765331 133333 244 1223211 167888999999999
Q ss_pred EEEeC
Q 018705 146 YFTVA 150 (351)
Q Consensus 146 y~t~~ 150 (351)
|+.+.
T Consensus 240 wfgcQ 244 (366)
T COG3490 240 WFGCQ 244 (366)
T ss_pred EEEEE
Confidence 99885
No 212
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.59 E-value=4.5 Score=38.73 Aligned_cols=187 Identities=13% Similarity=0.133 Sum_probs=93.7
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEe
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAI 127 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l 127 (351)
.-.+++++|..-.=++.+..-++..++..+-.+ +.+.......+ ++.|-.||+|+.+....|.+++.. .. ++.+
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~-s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVY-SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhcccee-EEEeecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence 334666665432222222233466666533322 22322233466 888889999998877778777763 21 2333
Q ss_pred cCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEE
Q 018705 128 VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVV 205 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~ly 205 (351)
.......+-+-+.+++ +++++.+. +.-+-.||.++..+.. +...-.+..+.+++|....++
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sD-----------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSD-----------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCC-----------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE
Confidence 2222344555667755 45554432 2234455666555421 122233455667777665577
Q ss_pred EEec-ce--eEEeecCCCCceeEEeccCCCCC-CceEECCCCCEEEEEecCCchhhhhh
Q 018705 206 VCES-WK--RYWLKGDRAGILDAFIENLPGGP-DNINLAPDGSFWIGLIKMNQTGVRAI 260 (351)
Q Consensus 206 v~~~-~~--~~~i~~~~~~~~~~~~~~~~g~p-d~i~~d~~G~lwva~~~~~~~~~~~~ 260 (351)
++-. ++ |.|-. +.....+..-+ .|.| ..+.+=+.|.+.++.+.+....+|..
T Consensus 170 vtGsYDg~vrl~Dt--R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDT--RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred EecCCCceEEEEEe--ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 7554 34 55522 11111111111 1223 44555566667776655544555544
No 213
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.55 E-value=3.6 Score=37.48 Aligned_cols=140 Identities=12% Similarity=0.088 Sum_probs=72.0
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-----EEEeecCCccccceEEcCCCCEEE-Ee-CCCCe--EEEcC--
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-----VNWKHIDSQSLLGLTTTKDGGVIL-CD-NEKGL--LKVTE-- 121 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-----~~~~~~~~~p~~gl~~d~~G~L~v-~d-~~~gl--~~~~~-- 121 (351)
.-.+++|..++..|-+...|+.|..|+.++=.. .+..-.-+.|. -++|.+|-+-+| .- .++.+ |..++
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 346899995555666667788888887643211 11112234677 888888764332 22 23333 33332
Q ss_pred CC-e-EEec--CCC-------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCc
Q 018705 122 EG-V-EAIV--PDA-------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGF 189 (351)
Q Consensus 122 ~g-~-~~l~--~~~-------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~ 189 (351)
+| . .... +.. .-+-++-+..++.+..+.+. +..|..|+.+ |+. ..+-...
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~-----------------dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL-----------------DTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEecC-----------------CCcEEEEecC-Cceeeeecccc
Confidence 45 2 1111 111 11112333333333344433 2358888887 444 3332222
Q ss_pred cccceEEEcCCCCEEEEEecce
Q 018705 190 YFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 190 ~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
....-.++||+|+++-++....
T Consensus 229 ~~n~~aavSP~GRFia~~gFTp 250 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTP 250 (420)
T ss_pred ccccceeeCCCCcEEEEecCCC
Confidence 3334568999999777766555
No 214
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.54 E-value=0.19 Score=30.84 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=29.6
Q ss_pred cCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEc
Q 018705 141 SDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS 198 (351)
Q Consensus 141 ~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~ 198 (351)
|+| ++|+++.. .+.|..+|+++++...-......|.+++++
T Consensus 1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 344 58998864 468999999887765545556788888875
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.46 E-value=1.1 Score=41.27 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=62.4
Q ss_pred EEeeCCCeEEEEE----cCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEc--CCC--eEEe
Q 018705 58 SVVVSKGALYTAT----RDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT--EEG--VEAI 127 (351)
Q Consensus 58 ~~d~~~g~lyv~~----~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~--~~g--~~~l 127 (351)
|+.+..++-|.+. ..|.|+.+|..+=+. ..+....+... .|+|+++|.+..+.+.+| ++|+. ++| +..+
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 5554455555433 368899998754333 34444445566 899999999998776655 56665 577 6666
Q ss_pred cCCC--CCcccEEEccCCcEEEEeCC
Q 018705 128 VPDA--SFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 128 ~~~~--~~~n~l~~d~dG~ly~t~~~ 151 (351)
..+. ..+.+|++++|+.+..+.+.
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecC
Confidence 5553 67889999999986655544
No 216
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.37 E-value=0.88 Score=47.01 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=82.8
Q ss_pred CCCceEEEeeCCCeE-EEE-EcCCEEEEEEcCCCeE-EEEeecCCccccceEEcC------CCCEEEEeCCCCeEEEcC-
Q 018705 52 NHPEDVSVVVSKGAL-YTA-TRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTK------DGGVILCDNEKGLLKVTE- 121 (351)
Q Consensus 52 ~~pe~i~~d~~~g~l-yv~-~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~------~G~L~v~d~~~gl~~~~~- 121 (351)
..|..+.....+..+ +.. .....|+++|...|++ +.|......|...++-+. +..-|++-..++++++|+
T Consensus 481 ~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 481 FTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred cCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence 345554444233333 333 2356799999998986 455433222221333331 235788888899999995
Q ss_pred -CC-eEEecC--C---CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-c
Q 018705 122 -EG-VEAIVP--D---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-N 193 (351)
Q Consensus 122 -~g-~~~l~~--~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-n 193 (351)
.| ..+... . .....+++.+.+|.|-++.. .|.|-.||.-+.+.+....++..| -
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII 622 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence 45 221111 1 15667888888998877654 467888886544444444454444 5
Q ss_pred eEEEcCCCCEEEEEe
Q 018705 194 GIALSKNEDFVVVCE 208 (351)
Q Consensus 194 gi~~~~dg~~lyv~~ 208 (351)
||.++.||+++..+.
T Consensus 623 ~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 623 GIDVTADGKWILATC 637 (794)
T ss_pred EEEecCCCcEEEEee
Confidence 899999999665543
No 217
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.25 E-value=4.2 Score=37.02 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=85.9
Q ss_pred EEcCCEEEEEEcCCCe------EEEEeec-CCccccceEEcCC---CCEEEEeCCCCeEEEcCCC--eEEe----cCCC-
Q 018705 69 ATRDGWVKYFILHNET------LVNWKHI-DSQSLLGLTTTKD---GGVILCDNEKGLLKVTEEG--VEAI----VPDA- 131 (351)
Q Consensus 69 ~~~~g~I~~~d~~~g~------~~~~~~~-~~~p~~gl~~d~~---G~L~v~d~~~gl~~~~~~g--~~~l----~~~~- 131 (351)
.+++|.|.-|.+.-+. +..+... .+..+.|+++... ..||.++-.++.+.+.+.. ...+ .+..
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 4667888877653222 2222222 2455668888733 4799999877665554322 1111 1110
Q ss_pred ---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcC------C
Q 018705 132 ---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSK------N 200 (351)
Q Consensus 132 ---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~------d 200 (351)
..|..|.. -.|+||++-....-. ..+-..+...|-|-+||++..-++++..+ +..|.||++.| .
T Consensus 186 PagyAPFnIqn-ig~~lyVtYA~qd~~----~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 186 PAGYAPFNVQN-LGGTLYVTYAQQDAD----RNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCcceEE-ECCeEEEEEEecCCc----ccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 45666643 247899986431111 12223345567899999986656666543 67899999966 3
Q ss_pred CCEEEEEecce-eEEeecCCCCc
Q 018705 201 EDFVVVCESWK-RYWLKGDRAGI 222 (351)
Q Consensus 201 g~~lyv~~~~~-~~~i~~~~~~~ 222 (351)
|+ |.|...+. +|..-+...++
T Consensus 261 g~-lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GA-LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CC-eEEeecCCceeEEecCCCCc
Confidence 44 77877766 77666554444
No 218
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.22 E-value=1.5 Score=41.35 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=54.8
Q ss_pred CceEEEEeCCCCeEEEeecCc-cccceEEEcCCCCEEEE-EecceeEEeecCCCCceeEEeccCCCCC--CceEECCCCC
Q 018705 169 YGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVV-CESWKRYWLKGDRAGILDAFIENLPGGP--DNINLAPDGS 244 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~~~~-~~~ngi~~~~dg~~lyv-~~~~~~~~i~~~~~~~~~~~~~~~~g~p--d~i~~d~~G~ 244 (351)
...+|.+|.++++++.+.++- ....|..++++.+.+|+ -+..+.+.++-.+.....++... .++. .....++++.
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSDCT 137 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSS
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC-cccccccceeeCCCcc
Confidence 347999999999998887653 23347788888887655 44333333332222233344311 1111 1234578899
Q ss_pred EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEE
Q 018705 245 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN 306 (351)
Q Consensus 245 lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~ 306 (351)
++++....+... ..+......+++... .+..+|+.+|-.+|+....+.
T Consensus 138 ~~~g~e~~~~d~-~~l~~~~~f~e~~~a-------------~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 138 KLVGIEISREDW-KPLTKWKGFREFYEA-------------RPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp EEEEEEEEGGG------SHHHHHHHHHC----------------EEEEEEETTT--EEEEEE
T ss_pred EEEEEEEeehhc-cCccccHHHHHHHhh-------------CCCceEEEEECCCCceeEEEe
Confidence 988875432211 111122233343332 233578888885665444333
No 219
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.06 E-value=0.28 Score=30.51 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=28.5
Q ss_pred CcEEEEeCCCccCCcccccccccccCCc-eEEEEeCCCCeE-EEeecCccccceEEEcC
Q 018705 143 GTLYFTVASTKYTPTDFYKDMAEGKPYG-QLRKYDPKLKET-TVLHEGFYFANGIALSK 199 (351)
Q Consensus 143 G~ly~t~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~ 199 (351)
|+||+||.. .. .+.+-+.++... ..+...+..|+||++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 578999986 23 677766665444 44557789999999974
No 220
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.68 E-value=3.3 Score=39.58 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=88.1
Q ss_pred CCCceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CCeEEe-
Q 018705 52 NHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EGVEAI- 127 (351)
Q Consensus 52 ~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g~~~l- 127 (351)
..-.+.++.|.++ .+.+|..||.|..||.............+.|.-.+.+-+.|.+++...+ ..++++. .|.+.+
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT 232 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence 3456777776655 5667889999999997544333333344555435666688888877654 4666663 352222
Q ss_pred --cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccc---eEEEcCCCC
Q 018705 128 --VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN---GIALSKNED 202 (351)
Q Consensus 128 --~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n---gi~~~~dg~ 202 (351)
......+.++++..+++-.++.+- ++.|-.||.. ..+++ ....+|. .|+++||++
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sL-----------------D~~VKVfd~t--~~Kvv-~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSL-----------------DRHVKVFDTT--NYKVV-HSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred hhhcccceEEEEEeecCCceEeeccc-----------------ccceEEEEcc--ceEEE-EeeecccceeeEEecCCCc
Confidence 112256788888887754444433 5678888843 34332 3445555 478999999
Q ss_pred EEEEEecce
Q 018705 203 FVVVCESWK 211 (351)
Q Consensus 203 ~lyv~~~~~ 211 (351)
.++++-+++
T Consensus 293 t~viGmsnG 301 (487)
T KOG0310|consen 293 TVVIGMSNG 301 (487)
T ss_pred eEEEecccc
Confidence 899987777
No 221
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.60 E-value=0.42 Score=29.20 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=30.8
Q ss_pred eCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEc
Q 018705 61 VSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTT 102 (351)
Q Consensus 61 ~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d 102 (351)
|+++.+|++.. ++.|..+|..+++.......+..|. +++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence 35788999775 7789999987777655555567788 88764
No 222
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.53 E-value=6.7 Score=36.92 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=44.6
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE---EeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~---~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~ 120 (351)
-.++.|-+..+.|.++..|..|..|+...++... .....+... .+.+|+++.-.++....+-.+++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it-~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT-SIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc-eeeecCCCceEEeecCCCceeee
Confidence 3467787556889998888888888764444322 223334456 89999999877777666655555
No 223
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.51 E-value=4.4 Score=40.30 Aligned_cols=170 Identities=15% Similarity=0.239 Sum_probs=88.6
Q ss_pred EEEeeCCCe-EEEEEcCCEEEEEEcCCC--eE-EE----EeecCCccccceEEcCCCCEEEEeCCCCeEEEc---CC--C
Q 018705 57 VSVVVSKGA-LYTATRDGWVKYFILHNE--TL-VN----WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EE--G 123 (351)
Q Consensus 57 i~~d~~~g~-lyv~~~~g~I~~~d~~~g--~~-~~----~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~~--g 123 (351)
+..|..+++ ||+|..||.|..|+.... +. +. +.......+ .|+.-.+|+-+|.-+..-.++++ .+ .
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh-hHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 344444555 999999998888875222 11 11 111223455 66666677544443334445554 23 2
Q ss_pred -eEEecCCCCCcccEEE-ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-------Cc-----
Q 018705 124 -VEAIVPDASFTNDVIA-ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-------GF----- 189 (351)
Q Consensus 124 -~~~l~~~~~~~n~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-------~~----- 189 (351)
..++.+....+..++. .++..+.++.+- +++|+.||-+++..+.+.. .+
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGL-----------------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGL-----------------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCC-----------------CccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 4445444456777777 555555555432 4578888877663222110 01
Q ss_pred cccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCce---EECCCCCEEEEEe
Q 018705 190 YFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNI---NLAPDGSFWIGLI 250 (351)
Q Consensus 190 ~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i---~~d~~G~lwva~~ 250 (351)
.....++..+.| +++++.... |+| +++...... .+.|.-||+ .+++||+-.++..
T Consensus 172 ~siYSLA~N~t~-t~ivsGgtek~lr~w--Dprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 172 DSIYSLAMNQTG-TIIVSGGTEKDLRLW--DPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSAS 232 (735)
T ss_pred cceeeeecCCcc-eEEEecCcccceEEe--cccccccee---eeeccccceEEEEEcCCCCeEeecC
Confidence 122345666666 466654333 555 443322211 233556775 5688897666643
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=93.28 E-value=6.9 Score=36.32 Aligned_cols=183 Identities=12% Similarity=0.092 Sum_probs=97.4
Q ss_pred CceEEEeeCCC-eEEEEEcCCEEEEEEcC-------------CCeEEEEeecCCccccceEEcCCCCEEEEeCC-CCeEE
Q 018705 54 PEDVSVVVSKG-ALYTATRDGWVKYFILH-------------NETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLK 118 (351)
Q Consensus 54 pe~i~~d~~~g-~lyv~~~~g~I~~~d~~-------------~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-~gl~~ 118 (351)
-.+++|-|-.+ .+-|+...| |..|... ++..+.+..++..|.+.|...+||..|+..+. ..-+.
T Consensus 143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~ 221 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIM 221 (445)
T ss_pred eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEE
Confidence 45677766443 345565554 6555321 11223344455566657888899988876544 33344
Q ss_pred Ec-C-CC-eEEec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce
Q 018705 119 VT-E-EG-VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG 194 (351)
Q Consensus 119 ~~-~-~g-~~~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng 194 (351)
++ + +| ...+. .......-+..+|||..+|+.+-.. .-+||.-+. +-..+...-+-....+
T Consensus 222 iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da---------------vfrlw~e~q-~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 222 IWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA---------------VFRLWQENQ-SWTKERWILGSGRVQT 285 (445)
T ss_pred EEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc---------------eeeeehhcc-cceecceeccCCceee
Confidence 44 4 55 44443 2335666788999997666654200 012331111 1111222222225667
Q ss_pred EEEcCCCCEEEEEecce--eEEee--cC--------CCCceeEEec--------c---CCCCCCceEECCCCCEEEEEec
Q 018705 195 IALSKNEDFVVVCESWK--RYWLK--GD--------RAGILDAFIE--------N---LPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 195 i~~~~dg~~lyv~~~~~--~~~i~--~~--------~~~~~~~~~~--------~---~~g~pd~i~~d~~G~lwva~~~ 251 (351)
-+++|+|.+|.++-.+. .|.+. +. ...+..+.++ + .-|-+.-++.|+.|++.+..+.
T Consensus 286 acWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 78999999888877666 34432 11 0011112222 0 1133566899999987777666
Q ss_pred CC
Q 018705 252 MN 253 (351)
Q Consensus 252 ~~ 253 (351)
+.
T Consensus 366 g~ 367 (445)
T KOG2139|consen 366 GQ 367 (445)
T ss_pred CC
Confidence 53
No 225
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.26 E-value=7.3 Score=36.53 Aligned_cols=136 Identities=24% Similarity=0.247 Sum_probs=71.9
Q ss_pred eEEEEeCCCCeEEEeec------CccccceEEEcCCCCEEEEEecce-----eEEeecCCCCceeEEec-cCCCC---CC
Q 018705 171 QLRKYDPKLKETTVLHE------GFYFANGIALSKNEDFVVVCESWK-----RYWLKGDRAGILDAFIE-NLPGG---PD 235 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~~------~~~~~ngi~~~~dg~~lyv~~~~~-----~~~i~~~~~~~~~~~~~-~~~g~---pd 235 (351)
.|+.+|.++++...+.. .-..-..+.+.+|++.+++...++ ++.+.+...+..+.... ..++. ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 47778887776533221 112233577888887677766554 23333333344333322 22222 23
Q ss_pred ceEEC-CCC--CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCc
Q 018705 236 NINLA-PDG--SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATY 312 (351)
Q Consensus 236 ~i~~d-~~G--~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~ 312 (351)
...+- ++| -+|+.. . .....+..++. +|.....+. .|.
T Consensus 239 ~~~~~~~~~~~~l~~s~-~----------------------------------~G~~hly~~~~-~~~~~~~lT--~G~- 279 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISE-R----------------------------------DGYRHLYLYDL-DGGKPRQLT--SGD- 279 (353)
T ss_dssp EEEE-TTTSSEEEEEEE-T----------------------------------TSSEEEEEEET-TSSEEEESS---SS-
T ss_pred ccccccCCCCEEEEEEE-c----------------------------------CCCcEEEEEcc-cccceeccc--cCc-
Confidence 34432 333 366654 2 22457899999 777665554 232
Q ss_pred ccceeEEE---EECCEEEEEecC----CCeEEEEeCC-CCCC
Q 018705 313 ISFVTSAA---EFDGNLYLASLQ----SNFIGILPLD-GPEP 346 (351)
Q Consensus 313 ~~~~~~~~---~~~g~L~ig~~~----~~~i~~~~~~-~~~~ 346 (351)
..++.+. ..++.||+.... ...|+++++. +.++
T Consensus 280 -~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 280 -WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp -S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred -eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 3444443 235788887765 3488898888 5554
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=93.22 E-value=1.5 Score=42.43 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEEecc
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESW 210 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~~ 210 (351)
..+|.+++++||....+.+. +|-|-.||-.+.++.-+... +..--++++||||+++...-.+
T Consensus 291 g~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred ccccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc
Confidence 68999999999987777764 45555555544443222211 2334578999999966654433
Q ss_pred e
Q 018705 211 K 211 (351)
Q Consensus 211 ~ 211 (351)
.
T Consensus 354 D 354 (636)
T KOG2394|consen 354 D 354 (636)
T ss_pred c
Confidence 3
No 227
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.10 E-value=0.24 Score=30.34 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=23.1
Q ss_pred eecCccccceEEEcCCCCEEEEEecce
Q 018705 185 LHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 185 ~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
+..++..|+|+++++.++.+|+++...
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~ 30 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGL 30 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCC
Confidence 345678899999999999999999876
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.05 E-value=5.2 Score=39.29 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=64.9
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEec--
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIV-- 128 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~-- 128 (351)
+++.+...=-||++.....|||++...|++ ..+....+..+ .+.+.+...|+.+....|.+..+ + +. +..+-
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 555553333466555556699999988876 34433334444 66667766777776666777776 2 32 33321
Q ss_pred CCC---------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705 129 PDA---------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (351)
Q Consensus 129 ~~~---------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 186 (351)
... ..+..+.++.|| |=++. |+..|.++.||..+.+...+.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~g-L~~aV----------------Gts~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDG-LHVAV----------------GTSTGSVLIYDLRASKPLLVK 266 (703)
T ss_pred cccCCCccccccCcceEEEecCCc-eeEEe----------------eccCCcEEEEEcccCCceeec
Confidence 110 335566666665 22222 234688999998765544433
No 229
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.99 E-value=6.3 Score=35.11 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=93.1
Q ss_pred CCcCCCceEEEeeCCCe-EEEEEcCCEEEEEEcCCC-eEEE--Ee-ecCCccccceEEcCCCCEEEEeCCCCeEEEcC--
Q 018705 49 GCVNHPEDVSVVVSKGA-LYTATRDGWVKYFILHNE-TLVN--WK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-- 121 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~-lyv~~~~g~I~~~d~~~g-~~~~--~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-- 121 (351)
+....--++++.|..|+ |+....|..|..++...+ .+.- .. ....+....+|..|.|++..+.+......+.+
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 33334568899965355 666777887877776422 2221 11 11223223889999999877777777777773
Q ss_pred CC-eEE---ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeEEEe---ecCccccc
Q 018705 122 EG-VEA---IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVL---HEGFYFAN 193 (351)
Q Consensus 122 ~g-~~~---l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~---~~~~~~~n 193 (351)
++ .+. +....+-+-+++.+++|++..|.+.. ..||.+... .++++.. ....+-.-
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-----------------KSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRD-----------------KSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC-----------------CeEEEEEecCCCcEEEEeeecccccccc
Confidence 44 443 33334778899999999999888752 356655322 2454432 23344566
Q ss_pred eEEEcCCCCEEEEEecce--eEEee
Q 018705 194 GIALSKNEDFVVVCESWK--RYWLK 216 (351)
Q Consensus 194 gi~~~~dg~~lyv~~~~~--~~~i~ 216 (351)
++.++|....|+-+..++ ++|-.
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEee
Confidence 789999888555566566 55544
No 230
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.94 E-value=13 Score=38.69 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=39.8
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCcc---------ccceEEc-----------------CCCCEEEEeCCCCe
Q 018705 63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQS---------LLGLTTT-----------------KDGGVILCDNEKGL 116 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p---------~~gl~~d-----------------~~G~L~v~d~~~gl 116 (351)
++.+|+.+.++.|+.+|.++|+.. |......+ ..|+++- .++++|+.+....+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~l-W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEK-WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 789999999999999999999753 32111000 0133221 23478888877788
Q ss_pred EEEcC-CC
Q 018705 117 LKVTE-EG 123 (351)
Q Consensus 117 ~~~~~-~g 123 (351)
+.+|. +|
T Consensus 273 iALDA~TG 280 (764)
T TIGR03074 273 IALDADTG 280 (764)
T ss_pred EEEECCCC
Confidence 99984 77
No 231
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.90 E-value=4.1 Score=40.51 Aligned_cols=172 Identities=11% Similarity=0.095 Sum_probs=93.1
Q ss_pred hccCCCccccccCCCCCCCcCccCceEecCCCcCCCceEEEeeCCCeEE-EEEcCCEEEEEEcCCCeEE---EEe-----
Q 018705 19 FFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALY-TATRDGWVKYFILHNETLV---NWK----- 89 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~p~~~~~l~~~~~i~~~~~~~pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g~~~---~~~----- 89 (351)
+..|+-|.-..+|++-..|. --...|.+- -..-.+++.-.++..++ .|.-|++|..||..+|..+ .+.
T Consensus 88 lIS~SsDtTVK~W~~~~~~~--~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNT--FCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred eEEecCCceEEEeecccCcc--hhHhhhhcc-cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 34455565555565543330 011223222 23455777632444444 4556899999998766221 110
Q ss_pred ----ecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCccccc
Q 018705 90 ----HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYK 161 (351)
Q Consensus 90 ----~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~ 161 (351)
.+....+ .++..+.|.++|+..-.+.++++ + ++ +-.+...-..+..+.+++||+=.++.++
T Consensus 165 sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS---------- 233 (735)
T KOG0308|consen 165 SLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS---------- 233 (735)
T ss_pred cCCCCCcccee-eeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----------
Confidence 1112346 78888888888877666777776 3 44 2223333357888999999987777766
Q ss_pred ccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecce
Q 018705 162 DMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 162 ~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
+|.|-.||...++- ..+.-.-.....+..+++-+.+|.++..+
T Consensus 234 -------DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 234 -------DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred -------CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence 56677777643221 11111111123344455555666666555
No 232
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=92.82 E-value=2.1 Score=42.71 Aligned_cols=97 Identities=13% Similarity=0.240 Sum_probs=58.5
Q ss_pred CcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEe
Q 018705 50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAI 127 (351)
Q Consensus 50 ~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l 127 (351)
...--+++++- ++..+.....||.|.+|+..++.+.+........+ .+....++.++|+....+.+++++.+ .+.+
T Consensus 178 HtD~VRgL~vl-~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I 255 (745)
T KOG0301|consen 178 HTDCVRGLAVL-DDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKDECVQVI 255 (745)
T ss_pred chhheeeeEEe-cCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecCceEEEE
Confidence 33445677777 45455555678888899884444444444445566 77766777899988888999999755 4444
Q ss_pred cCCCCCcccEEEccCCcEEEE
Q 018705 128 VPDASFTNDVIAASDGTLYFT 148 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t 148 (351)
..+...+.+..+-++|.|++.
T Consensus 256 ~lPttsiWsa~~L~NgDIvvg 276 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGDIVVG 276 (745)
T ss_pred ecCccceEEEEEeeCCCEEEe
Confidence 333223334444344444443
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.72 E-value=1.9 Score=41.02 Aligned_cols=179 Identities=11% Similarity=0.044 Sum_probs=85.4
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecC
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP 129 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~ 129 (351)
.||-.+-....+..+.++...|.|..+|-.++++..-........ .+.+-.+-.+|.+.-..-+|.|+.+| ++.+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence 589999888666678889999999999987776532111111111 22222222222221122344444444 333332
Q ss_pred CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEEEEe
Q 018705 130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~lyv~~ 208 (351)
. ..++-+.+-|--.|.++.+. .|-+-..|-++|++.. +..+.....-++-.|-...+-++.
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~-----------------~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASE-----------------AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred c-Cchhhhcccchhheeeeccc-----------------CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence 2 23333333343334444332 2344444555554311 111111222233334433344444
Q ss_pred cce--eEEeecCCCCce--eEEeccCCCCCCceEECCCCCEEEEEecCC
Q 018705 209 SWK--RYWLKGDRAGIL--DAFIENLPGGPDNINLAPDGSFWIGLIKMN 253 (351)
Q Consensus 209 ~~~--~~~i~~~~~~~~--~~~~~~~~g~pd~i~~d~~G~lwva~~~~~ 253 (351)
+++ .+|. ++.... .++. ..|....+++|+.|++-++++..|
T Consensus 271 snGtVSlWS--P~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr 315 (545)
T KOG1272|consen 271 SNGTVSLWS--PNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDR 315 (545)
T ss_pred CCceEEecC--CCCcchHHHHHh--cCCCcceEEECCCCcEEeeccccc
Confidence 444 4553 222111 1222 234457899999999888876543
No 234
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.62 E-value=6.5 Score=38.00 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=44.3
Q ss_pred eEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 018705 171 QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 247 (351)
.||.+|..+++...+.........=.++|||+.++++.... .+++-+...+..+.+..... ....-..+++|...+
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~~~~p~~SpdG~~i~ 341 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-GNSNPVWSPDGDKIV 341 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-CCcCccCCCCCCEEE
Confidence 58999988777655433322222346899999888865443 45554333333333332222 223456778887665
Q ss_pred EEe
Q 018705 248 GLI 250 (351)
Q Consensus 248 a~~ 250 (351)
-..
T Consensus 342 ~~~ 344 (425)
T COG0823 342 FES 344 (425)
T ss_pred EEe
Confidence 544
No 235
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.46 E-value=0.13 Score=27.70 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=12.5
Q ss_pred CceEECCCCCEEEEEe
Q 018705 235 DNINLAPDGSFWIGLI 250 (351)
Q Consensus 235 d~i~~d~~G~lwva~~ 250 (351)
..+..|++|+||+++.
T Consensus 8 ~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEE-TTSCEEEEET
T ss_pred EEEEEcCCcCEEEEeC
Confidence 4578999999999974
No 236
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.32 E-value=8.4 Score=34.87 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=29.1
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK 89 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~ 89 (351)
-+++|..++..+|++..|+.+-.||..++++..+.
T Consensus 76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred EEEEEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence 48899866668899999999999999888776653
No 237
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.31 E-value=2.1 Score=39.71 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=41.1
Q ss_pred CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEe--ecCc---------c----ccceEE
Q 018705 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVL--HEGF---------Y----FANGIA 196 (351)
Q Consensus 133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~--~~~~---------~----~~ngi~ 196 (351)
.+.+|++.++|.+|+++.... ......+|++|+++ |+. +.+ ...+ . ...|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 577899988999999986520 00112478999877 544 222 1211 1 233799
Q ss_pred EcCCCCEEEEEe
Q 018705 197 LSKNEDFVVVCE 208 (351)
Q Consensus 197 ~~~dg~~lyv~~ 208 (351)
+++||++||++.
T Consensus 154 ~~~dG~~l~~~~ 165 (326)
T PF13449_consen 154 VSPDGRTLFAAM 165 (326)
T ss_pred ECCCCCEEEEEE
Confidence 999999788753
No 238
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.25 E-value=9.6 Score=35.35 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=30.4
Q ss_pred CeEEEEEcCCEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCEEEEe
Q 018705 64 GALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCD 111 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~d 111 (351)
-...+++.++.|..+|..+|+.+..... ..... .|++|..|.+.+.-
T Consensus 121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~-di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVF-DISFDASGKYLATC 168 (406)
T ss_pred eEEEEecCCceEEEEEccchhhhhhhhcccccee-EEEEecCccEEEec
Confidence 3444566789999999888877543221 12244 78888888666654
No 239
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.19 E-value=11 Score=36.02 Aligned_cols=64 Identities=8% Similarity=-0.088 Sum_probs=34.4
Q ss_pred ceEEE--eeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC------CccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705 55 EDVSV--VVSKGALYTATRDGWVKYFILHNETLVNWKHID------SQSLLGLTTTKDGGVILCDNEKGLLKVTE 121 (351)
Q Consensus 55 e~i~~--d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~------~~p~~gl~~d~~G~L~v~d~~~gl~~~~~ 121 (351)
-+|+| + +.++-|+....|.|++-+-....++....+. ..+..++.+. +++.|++-.. +++....
T Consensus 91 ~~V~F~~~-d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~-~~~g~~vG~~-G~il~T~ 162 (398)
T PLN00033 91 LDIAFVPD-DPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFK-GKEGWIIGKP-AILLHTS 162 (398)
T ss_pred EEEEeccC-CCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccccceeeeEEE-CCEEEEEcCc-eEEEEEc
Confidence 47777 3 4567777666787776543122444432111 1132278776 4678887543 5555444
No 240
>KOG4328 consensus WD40 protein [Function unknown]
Probab=92.15 E-value=11 Score=35.94 Aligned_cols=139 Identities=11% Similarity=0.067 Sum_probs=72.5
Q ss_pred ceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEeecC---CccccceEEc-CCCCEEEEeCCCCeEEEc-C-CC--eE
Q 018705 55 EDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTT-KDGGVILCDNEKGLLKVT-E-EG--VE 125 (351)
Q Consensus 55 e~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~~~---~~p~~gl~~d-~~G~L~v~d~~~gl~~~~-~-~g--~~ 125 (351)
.+|.+.|.+ ..+|..+.||.|...|..++.++.+.... ..-. ++-+. .++.+++++..+..-.++ + +| ..
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs-~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFS-SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeee-eccccCCCccEEEeecccceEEEEeecCCccch
Confidence 467777644 46788888898888888666554332211 1112 33333 355777777665333333 2 33 22
Q ss_pred EecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC--CeEEEee---cCccccceEEEcC
Q 018705 126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL--KETTVLH---EGFYFANGIALSK 199 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~--~~~~~~~---~~~~~~ngi~~~~ 199 (351)
.+......++++++.|-. .+.+|.+. ++.+-.||... ++...+. ..-...|...|||
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~-----------------D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP 379 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASL-----------------DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP 379 (498)
T ss_pred hhhhhhcccceeecCCCCchheeeccc-----------------CcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence 222222478888888865 34444443 12233444221 1111011 1123456788999
Q ss_pred CCCEEEEEecce
Q 018705 200 NEDFVVVCESWK 211 (351)
Q Consensus 200 dg~~lyv~~~~~ 211 (351)
.+.+|..+..++
T Consensus 380 s~gtl~TT~~D~ 391 (498)
T KOG4328|consen 380 SGGTLLTTCQDN 391 (498)
T ss_pred CCCceEeeccCC
Confidence 888766655555
No 241
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=92.01 E-value=2.7 Score=39.34 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=38.5
Q ss_pred ecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCC
Q 018705 46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDG 105 (351)
Q Consensus 46 i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G 105 (351)
+..+...-+-+++|.+++..+-.+.-++.++.+|...|.+.... .....+. |.+.|+-+
T Consensus 118 ~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-gvawDpl~ 177 (434)
T KOG1009|consen 118 VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-GVAWDPLN 177 (434)
T ss_pred EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-eeecchhh
Confidence 33333345668899976666777888999999998888765432 2334455 66666543
No 242
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.97 E-value=14 Score=36.76 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=28.3
Q ss_pred CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec
Q 018705 286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL 331 (351)
Q Consensus 286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~ 331 (351)
...+.+.++|.++||.+-.+..+.+..... .....+|++|+...
T Consensus 479 ~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P--~ty~~~G~qYv~~~ 522 (527)
T TIGR03075 479 TLEGYFKAFDAKTGEELWKFKTGSGIVGPP--VTYEQDGKQYVAVL 522 (527)
T ss_pred CCCCeEEEEECCCCCEeEEEeCCCCceecC--EEEEeCCEEEEEEE
Confidence 445678889998999888776543221111 12245899998764
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.76 E-value=1.8 Score=42.38 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=81.2
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EE---ee----cC----CccccceEEcCCC-CEEEEeCCCCeEEEc-
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NW---KH----ID----SQSLLGLTTTKDG-GVILCDNEKGLLKVT- 120 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~---~~----~~----~~p~~gl~~d~~G-~L~v~d~~~gl~~~~- 120 (351)
.++.+.+..|++-+|+.+|.+-.||+.+.... .+ .. ++ ..+. .+.|+.+| .+=|++..+.++.++
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEc
Confidence 35566666788889999999999998665321 11 11 11 1255 78888777 566777666677777
Q ss_pred CCC-eEEecCCC--CCcccEEEcc-C-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceE
Q 018705 121 EEG-VEAIVPDA--SFTNDVIAAS-D-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI 195 (351)
Q Consensus 121 ~~g-~~~l~~~~--~~~n~l~~d~-d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi 195 (351)
... .-...+.. .-+..+.+-+ + +.-.++... ..+-.||+.+|+.....+....-|-+
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk------------------~~~kiWd~~~Gk~~asiEpt~~lND~ 319 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK------------------RILKIWDECTGKPMASIEPTSDLNDF 319 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEecch------------------HHhhhcccccCCceeeccccCCcCce
Confidence 333 22222221 1122222211 1 222233221 13455777778776666666667888
Q ss_pred EEcCCCCEEEEEecce---eEEee
Q 018705 196 ALSKNEDFVVVCESWK---RYWLK 216 (351)
Q Consensus 196 ~~~~dg~~lyv~~~~~---~~~i~ 216 (351)
|+-|++..++++..+. .|.+.
T Consensus 320 C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 320 CFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred eeecCCceEEEecCCCcceeEEcc
Confidence 8889888555555444 45543
No 244
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=91.60 E-value=10 Score=34.31 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=74.2
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec---CCccccceEEcCCCCEEEEeCC-CCeEEEc-CCC--eEEec
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNE-KGLLKVT-EEG--VEAIV 128 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~---~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~-~~g--~~~l~ 128 (351)
.+.|+|++-.+..+..|..|+.|+- .|.-+.+... .+-.. ++.+.+|++..++-.. ..++..| .+| .+...
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv-~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNV-YGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEec-cccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 4577875445556777889999985 3433333221 22234 7778889976655444 4455555 366 33333
Q ss_pred CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe
Q 018705 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~ 208 (351)
....+.|.+.....|-..++..+ .++.+-.||..+++.......-..-..++|..++.-+..+-
T Consensus 130 ~h~~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 130 GHTSFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred cccceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence 33467888776666755554433 25667777765433211111111122345555555455555
Q ss_pred cce
Q 018705 209 SWK 211 (351)
Q Consensus 209 ~~~ 211 (351)
.++
T Consensus 194 Idn 196 (338)
T KOG0265|consen 194 IDN 196 (338)
T ss_pred ccC
Confidence 554
No 245
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.56 E-value=12 Score=34.87 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=72.5
Q ss_pred eEEEEeCCCCeEEEee--cC-ccccce-EEEcCCCCEEEEE--ecce---eEEeecCCCCceeEEeccCCCCCCceEECC
Q 018705 171 QLRKYDPKLKETTVLH--EG-FYFANG-IALSKNEDFVVVC--ESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAP 241 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~--~~-~~~~ng-i~~~~dg~~lyv~--~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~ 241 (351)
.+|.||-++ ++.+. +. ...|.| +|++++..--|.+ +... .+..+..+......+ +...+.--.+++++
T Consensus 107 ~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 107 SIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-NAHKGPLAALAFSP 183 (391)
T ss_pred cEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE-EecCCceeEEEECC
Confidence 588898753 33332 22 245665 4666655423333 2222 222122222222222 12233334578999
Q ss_pred CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEE-ECCCCeEEEEEECCCCCcccceeEEE
Q 018705 242 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV-DGNDGKIIRDFNDPDATYISFVTSAA 320 (351)
Q Consensus 242 ~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~g~~~~~~~~~~g~~~~~~~~~~ 320 (351)
+|++..+... .|.|+|+ +-.+|+.+..|. .|...-.+.++.
T Consensus 184 ~G~llATASe------------------------------------KGTVIRVf~v~~G~kl~eFR--RG~~~~~IySL~ 225 (391)
T KOG2110|consen 184 DGTLLATASE------------------------------------KGTVIRVFSVPEGQKLYEFR--RGTYPVSIYSLS 225 (391)
T ss_pred CCCEEEEecc------------------------------------CceEEEEEEcCCccEeeeee--CCceeeEEEEEE
Confidence 9998776543 3566665 323888888775 344445677888
Q ss_pred EEC-CEEEEEecCCCeEEEEeCCCC
Q 018705 321 EFD-GNLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 321 ~~~-g~L~ig~~~~~~i~~~~~~~~ 344 (351)
++. .++...+.....|-.|++...
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEeccc
Confidence 764 455555555677888887654
No 246
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.39 E-value=11 Score=34.14 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=37.9
Q ss_pred cEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe---ecCccccceEEEcCCCCEEEEEec
Q 018705 136 DVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 136 ~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
.-++++||. +|.|+...+ ...|-|-.||.. .....+ ......|.-+.+.+||+++.++.-
T Consensus 118 HGvfs~dG~~LYATEndfd-------------~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 118 HGVFSPDGRLLYATENDFD-------------PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccccCCCCcEEEeecCCCC-------------CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 347889995 677765411 123556777765 333332 233456888999999998887764
No 247
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.20 E-value=0.31 Score=26.27 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=9.3
Q ss_pred ceEEcCCCCEEEEeC
Q 018705 98 GLTTTKDGGVILCDN 112 (351)
Q Consensus 98 gl~~d~~G~L~v~d~ 112 (351)
.|..|++|+||+++.
T Consensus 9 ~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 9 SIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEE-TTSCEEEEET
T ss_pred EEEEcCCcCEEEEeC
Confidence 666677777777653
No 248
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.19 E-value=11 Score=33.70 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=69.5
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec-CCccc-cceEEcCCCCEEEEeCCCCeEEEc-CCC--eEEe
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSL-LGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAI 127 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-~~~p~-~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~~l 127 (351)
.|--+.-| ..-.+|++++.+++..+|+++|++. |... +.|.. ..+.+ .+.+.++=..+++|.+. ++| ...+
T Consensus 14 spLVV~~d-skT~v~igSHs~~~~avd~~sG~~~-We~ilg~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 14 SPLVVCND-SKTLVVIGSHSGIVIAVDPQSGNLI-WEAILGVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred CcEEEecC-CceEEEEecCCceEEEecCCCCcEE-eehhhCceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeee
Confidence 34444444 4567899999999999999999763 2221 22211 02222 11233343445566666 455 2212
Q ss_pred cCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce----EEEcC-CC
Q 018705 128 VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG----IALSK-NE 201 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng----i~~~~-dg 201 (351)
......--.-..|++| -||.+. . ++.+|.+|+++..- ++. ...+-+ -++++ ++
T Consensus 90 ~~~~~vk~~a~~d~~~glIycgs-h-----------------d~~~yalD~~~~~c-Vyk--skcgG~~f~sP~i~~g~~ 148 (354)
T KOG4649|consen 90 VILETVKVRAQCDFDGGLIYCGS-H-----------------DGNFYALDPKTYGC-VYK--SKCGGGTFVSPVIAPGDG 148 (354)
T ss_pred eehhhhccceEEcCCCceEEEec-C-----------------CCcEEEecccccce-EEe--cccCCceeccceecCCCc
Confidence 1111111122466666 456543 2 45678888765432 111 112222 24555 44
Q ss_pred CEEEEEecce-eEEee
Q 018705 202 DFVVVCESWK-RYWLK 216 (351)
Q Consensus 202 ~~lyv~~~~~-~~~i~ 216 (351)
.||++.+.+ .+.+.
T Consensus 149 -sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 149 -SLYAAITAGAVLAVT 163 (354)
T ss_pred -eEEEEeccceEEEEc
Confidence 599998887 44443
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.15 E-value=3.3 Score=38.59 Aligned_cols=130 Identities=12% Similarity=0.028 Sum_probs=78.7
Q ss_pred CceEEEeeC--CCeEEEEEcCCEEEEEEcCCCeE--EEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC--eE
Q 018705 54 PEDVSVVVS--KGALYTATRDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VE 125 (351)
Q Consensus 54 pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~~--~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g--~~ 125 (351)
+.++.|-+. ...+.+.+.-+.+..||++.++- ..+.. ..+|...+..++.|+ +|+++....+..+|- .+ ..
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence 445666533 34455677788899999865532 22222 234444778888885 688887777888884 44 11
Q ss_pred E-ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705 126 A-IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE 201 (351)
Q Consensus 126 ~-l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg 201 (351)
. +......+.+|...|.+.+..+.+-. ..|..||.++.++......-..+|+|.+.++-
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLD-----------------RyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLD-----------------RYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccc-----------------eeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 1 22222789999999988887776542 24667777653332222223567777776554
No 250
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.07 E-value=5.4 Score=39.94 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=43.0
Q ss_pred cccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 95 SLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 95 p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
.+ .+++.|||.-.+...++.++.+++ +| .+++......++.++.+.||..+.+.++
T Consensus 15 i~-d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 15 IN-DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred hh-eeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC
Confidence 45 899999995444444678999995 66 6766655578999999999998887665
No 251
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.95 E-value=6.9 Score=35.62 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=59.0
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCC-C--eEEec
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE-G--VEAIV 128 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~-g--~~~l~ 128 (351)
..++.+.|++++..+++...++ |-.+...+-++-.....+-++. .+.++..+.|.++-...-+...|.+ + ...+.
T Consensus 169 ~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~~r~l-~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 169 NKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENPKRIL-CATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred CcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhccccce-eeeecCCceEEEecCCceEEEeccCCCccceeee
Confidence 4577899998777888877765 5555443333322122224566 7788878888888765444444433 4 33333
Q ss_pred CCCCCcccEE--EccCCcEEEEeCC
Q 018705 129 PDASFTNDVI--AASDGTLYFTVAS 151 (351)
Q Consensus 129 ~~~~~~n~l~--~d~dG~ly~t~~~ 151 (351)
...+++-+++ ..+++.+.+|.++
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred cchhheeeeEEEecCCceEEEEecc
Confidence 3336677776 3456777777766
No 252
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=90.76 E-value=11 Score=34.22 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=79.2
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc---C--CC---eEE
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---E--EG---VEA 126 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~--~g---~~~ 126 (351)
.++.|...+..+..|.-|+.|-.||+..+...........|..+|...++|....++.-...+++. + .+ +.+
T Consensus 178 tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~i 257 (338)
T KOG0265|consen 178 TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKI 257 (338)
T ss_pred EEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEE
Confidence 467776455678888888889999987666655444334454489888999777766555555444 2 11 333
Q ss_pred ecCCC--CCccc--EEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCC
Q 018705 127 IVPDA--SFTND--VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNE 201 (351)
Q Consensus 127 l~~~~--~~~n~--l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg 201 (351)
+.... ...|- ...+|+++.. +- +..+..+|.||..+..+.. +.......|.+.|+|.+
T Consensus 258 f~g~~hnfeknlL~cswsp~~~~i-~a----------------gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 258 FQGHIHNFEKNLLKCSWSPNGTKI-TA----------------GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred eecchhhhhhhcceeeccCCCCcc-cc----------------ccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence 32221 11111 1233343211 11 1113357888865433332 23334567888888888
Q ss_pred CEEEEEecceeEE
Q 018705 202 DFVVVCESWKRYW 214 (351)
Q Consensus 202 ~~lyv~~~~~~~~ 214 (351)
..+.-+.+++++.
T Consensus 321 ~iils~~sdk~i~ 333 (338)
T KOG0265|consen 321 PIILSCSSDKTIY 333 (338)
T ss_pred cEEEEeccCceeE
Confidence 7554455444433
No 253
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=90.61 E-value=1.1 Score=32.86 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=26.4
Q ss_pred CeEEEcCCCeEEecCCCCCcccEEEccCC-cEEEEeCC
Q 018705 115 GLLKVTEEGVEAIVPDASFTNDVIAASDG-TLYFTVAS 151 (351)
Q Consensus 115 gl~~~~~~g~~~l~~~~~~~n~l~~d~dG-~ly~t~~~ 151 (351)
.++.++++..+..++...+||+|++++++ .||+++..
T Consensus 37 ~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 37 NVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred eEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEecc
Confidence 34444433345556666899999999987 69999875
No 254
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.42 E-value=13 Score=34.71 Aligned_cols=139 Identities=13% Similarity=0.012 Sum_probs=73.7
Q ss_pred eEEEeeCCCeEEEEE--cC---CEEEEEEcCCCeEEEEee--cCC--ccccceEEc-CCC--CEEEEeCC--CCeEEEcC
Q 018705 56 DVSVVVSKGALYTAT--RD---GWVKYFILHNETLVNWKH--IDS--QSLLGLTTT-KDG--GVILCDNE--KGLLKVTE 121 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~--~~---g~I~~~d~~~g~~~~~~~--~~~--~p~~gl~~d-~~G--~L~v~d~~--~gl~~~~~ 121 (351)
.+.|.+++..+++.. .+ -.+..+|..+++.+.... ..+ .+...+.+- +++ -||+.... ..|+.++.
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 455654444365532 21 245666776665543321 111 111033332 333 46666622 25777776
Q ss_pred CC--eEEecCCCCCccc-EEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeEEEeecCccccceEE
Q 018705 122 EG--VEAIVPDASFTND-VIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLHEGFYFANGIA 196 (351)
Q Consensus 122 ~g--~~~l~~~~~~~n~-l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~~~~~~~~ngi~ 196 (351)
++ .+.+..+.-.+++ +.+|+++ .|||+..... .....||+.+.+ +++.+.+......-..+.
T Consensus 268 ~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~-------------p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 268 DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN-------------PGERHLYRVSLDSGGEPKCLTCEDGDHYSAS 334 (353)
T ss_dssp TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG-------------TTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred cccceeccccCceeecccceEcCCCCEEEEEecCCC-------------CCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence 55 5666555333433 5678775 7898876411 112369999988 788877654332224899
Q ss_pred EcCCCCEEEEE
Q 018705 197 LSKNEDFVVVC 207 (351)
Q Consensus 197 ~~~dg~~lyv~ 207 (351)
+||+++++..+
T Consensus 335 ~Spdg~y~v~~ 345 (353)
T PF00930_consen 335 FSPDGKYYVDT 345 (353)
T ss_dssp E-TTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 99999855443
No 255
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=90.42 E-value=24 Score=36.44 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=74.6
Q ss_pred CccccceEEcCCCCE-EEEeCCCCeEEEc-CCC--eEEecCC---CCCcccEEEccCCcEEEEeCCCccCCccccccccc
Q 018705 93 SQSLLGLTTTKDGGV-ILCDNEKGLLKVT-EEG--VEAIVPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE 165 (351)
Q Consensus 93 ~~p~~gl~~d~~G~L-~v~d~~~gl~~~~-~~g--~~~l~~~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~ 165 (351)
.... .++++.=|+. +++.+.+.+-+++ ..| ...+.+. ...+.++++|.-+++.++...
T Consensus 449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~-------------- 513 (910)
T KOG1539|consen 449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA-------------- 513 (910)
T ss_pred cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC--------------
Confidence 3445 6777788875 4555555566666 366 3344321 167889999998889888875
Q ss_pred ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCC-CceeEEeccCCCCCCceEECCCC
Q 018705 166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRA-GILDAFIENLPGGPDNINLAPDG 243 (351)
Q Consensus 166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~-~~~~~~~~~~~g~pd~i~~d~~G 243 (351)
.|-+..||-+++....-..-...+.+|..+.... ++....+. .+.+.+..+ .-++.|. +.......+.+++||
T Consensus 514 ---~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR~f~-gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 514 ---DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVREFW-GHGNRITDMTFSPDG 588 (910)
T ss_pred ---cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhHHhh-ccccceeeeEeCCCC
Confidence 5667777776544322222234566666666554 33322222 333332111 1122222 112234557899999
Q ss_pred CEEEEE
Q 018705 244 SFWIGL 249 (351)
Q Consensus 244 ~lwva~ 249 (351)
+-.++.
T Consensus 589 rWlisa 594 (910)
T KOG1539|consen 589 RWLISA 594 (910)
T ss_pred cEEEEe
Confidence 844443
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.19 E-value=11 Score=36.94 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=59.9
Q ss_pred ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC---EEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEE
Q 018705 166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED---FVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINL 239 (351)
Q Consensus 166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~---~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~ 239 (351)
|++.|.++.|+...|+++.......+++++...-+++ .+|-+.... .+|.. +.... ..+-. -+..+..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~--~~~~~~~~~~~-~~~~~~sl~i 152 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE--KEKVIIRIWKE-QKPLVSSLCI 152 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec--ccceeeeeecc-CCCccceEEE
Confidence 4557889999988888877665444444333222222 233333333 34432 22221 22221 2224677899
Q ss_pred CCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCC
Q 018705 240 APDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT 311 (351)
Q Consensus 240 d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~ 311 (351)
.+||.+.+.... .+..+|-++++++..|.++.+.
T Consensus 153 s~D~~~l~~as~--------------------------------------~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 153 SPDGKILLTASR--------------------------------------QIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred cCCCCEEEeccc--------------------------------------eEEEEEccCceEEEEecCCCcc
Confidence 999987665432 4777888788988888776543
No 257
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=90.18 E-value=3.7 Score=38.51 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=65.1
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEe
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAI 127 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l 127 (351)
.-.+++++|.+..+...+.||.|..||....+-+ .+...+..+. .+...+...|.++.+...++++. + .| +-.+
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence 3468899975555666677898988986554432 3344445566 77777776666666566688887 3 55 3334
Q ss_pred cCCCCCcccEEEccCCcEEEEeCC
Q 018705 128 VPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 128 ~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
....+.+..+.+.++|+...|-+.
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccC
Confidence 333367888899999977777654
No 258
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=90.14 E-value=1.1 Score=27.20 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCcCCCceEEEeeCCCeEE-EEEcCCEEEEEEcC
Q 018705 49 GCVNHPEDVSVVVSKGALY-TATRDGWVKYFILH 81 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~ly-v~~~~g~I~~~d~~ 81 (351)
..+..|.++++|+.++.+| +....+.|.+.+.+
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 3578899999999888765 66667788888763
No 259
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.86 E-value=18 Score=34.12 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEEEEeecCC--ccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEE----ecC--CCCC
Q 018705 63 KGALYTATRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEA----IVP--DASF 133 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~--~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~----l~~--~~~~ 133 (351)
+|.+|+++.+|.++.+|..+|+..-.....+ .-. +-++-.++.+|+....+.++.+++ +|... ... ....
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 6889999999999999987786532222222 112 233345788888865567888886 57221 111 1111
Q ss_pred cccEEEccCCcEEEEeC
Q 018705 134 TNDVIAASDGTLYFTVA 150 (351)
Q Consensus 134 ~n~l~~d~dG~ly~t~~ 150 (351)
..... ..+|.+|++..
T Consensus 190 ~~~~~-~~~~~vy~~~~ 205 (370)
T COG1520 190 YGSPA-IASGTVYVGSD 205 (370)
T ss_pred ccCce-eecceEEEecC
Confidence 22222 55778888765
No 260
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=21 Score=34.94 Aligned_cols=137 Identities=9% Similarity=0.016 Sum_probs=87.2
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE--EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEe
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG-VEAI 127 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~--~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l 127 (351)
-.+++|. ...+-+|..++.|...|....+- +.......... |+...++|+..........+.++. .. +..+
T Consensus 263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~ 339 (484)
T KOG0305|consen 263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF 339 (484)
T ss_pred eEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence 3455663 66777788888888887643321 11233445678 999999998887766666666663 12 4444
Q ss_pred cCCCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEE
Q 018705 128 VPDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 128 ~~~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv 206 (351)
......+-.+++.|- ..|..+-.+ ..++.|..||..+|....-.........+.+++..+.+..
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGG---------------s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGG---------------SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCC---------------CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence 333355667777773 356555443 3356788889887765544444555667899998876655
Q ss_pred Ee
Q 018705 207 CE 208 (351)
Q Consensus 207 ~~ 208 (351)
+.
T Consensus 405 th 406 (484)
T KOG0305|consen 405 TH 406 (484)
T ss_pred ec
Confidence 44
No 261
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=89.76 E-value=15 Score=33.27 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=85.4
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCC-CEEEEeCCCCeEEEc-C--CC-eE
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDG-GVILCDNEKGLLKVT-E--EG-VE 125 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~-~--~g-~~ 125 (351)
.+-.+|...+..+.+..|.-|+.|-.||+.+. ...... .+...+ +.|-.| +|.|+.....+..++ + +. .+
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~~kkVy---~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q 170 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFDQGKKVY---CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ 170 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccccCceEE---EEeccCCEEEEeecCceEEEEEcccccchhh
Confidence 34557777766777888888999999998542 222111 112222 344344 677767666666666 2 11 21
Q ss_pred EecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEE--EeCC----CCeEE----Eee----cCcc
Q 018705 126 AIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK--YDPK----LKETT----VLH----EGFY 190 (351)
Q Consensus 126 ~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~----~~~~~----~~~----~~~~ 190 (351)
.-...+ ....+|+.-|++.=|+..+- .|||.. +|++ ..+.. ... +...
T Consensus 171 ~reS~lkyqtR~v~~~pn~eGy~~sSi-----------------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 171 RRESSLKYQTRCVALVPNGEGYVVSSI-----------------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred hccccceeEEEEEEEecCCCceEEEee-----------------cceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 112222 34555666565443443332 233221 2221 00000 000 1123
Q ss_pred ccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCc---eEECCCCCEEE
Q 018705 191 FANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDN---INLAPDGSFWI 247 (351)
Q Consensus 191 ~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~---i~~d~~G~lwv 247 (351)
-.|.|+|+|-.++++-+..++ .+|=- ...+.+. +++.+++. ++++.+|....
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~----~~rKrl~-q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDL----FNRKRLK-QLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccC----cchhhhh-hccCCCCceEEEEeccCCCeEE
Confidence 468899999877777666666 45521 1111122 23445444 57888996443
No 262
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=89.46 E-value=13 Score=32.18 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=62.2
Q ss_pred CCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEecCCC-------CCcccEEE
Q 018705 72 DGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG-VEAIVPDA-------SFTNDVIA 139 (351)
Q Consensus 72 ~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l~~~~-------~~~n~l~~ 139 (351)
|-+||.-|...|+- ..+....+... .+ +..+|.+++..+....++++. .. +.++.... ..+..+++
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghil-al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHIL-AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEE-EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 44566666544432 22222222222 22 235666666665556666662 33 44443221 56778999
Q ss_pred ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecceeEEee
Q 018705 140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWKRYWLK 216 (351)
Q Consensus 140 d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~ 216 (351)
||.|++.++.-. +..-..||-.+++. +.+...-.....+.|+|.-.++.-++.+.++.+.
T Consensus 240 dpsgrll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 240 DPSGRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred CCCcceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence 999999987532 11222333222222 1111111223356788876655555555455544
No 263
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=89.43 E-value=2.4 Score=40.84 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcCCC--
Q 018705 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTEEG-- 123 (351)
Q Consensus 48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~~g-- 123 (351)
.|.-.+..||.+..++-+||+|.-|+.+..||..+++- ....+. .... .|-..+.|. |.|+-....+..+...+
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-SQIf-SLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-SQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-hhhe-ecccCCCccceeeecccCcEEEEecCCcc
Confidence 35556888999986677999999999999999877642 211111 1111 333334442 33333222222222222
Q ss_pred eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 124 VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
+..+.....-+-++-+.+-|..|++...
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCc
Confidence 3333333355667788888988888764
No 264
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.33 E-value=24 Score=35.02 Aligned_cols=110 Identities=11% Similarity=0.146 Sum_probs=57.6
Q ss_pred CccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecCCCCCcccEEEccCC-----------cEEEEeCCCccCCc
Q 018705 93 SQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVPDASFTNDVIAASDG-----------TLYFTVASTKYTPT 157 (351)
Q Consensus 93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~~~~~~n~l~~d~dG-----------~ly~t~~~~~~~~~ 157 (351)
+... +|.+|+.|...+.....|.++++. +| ++++... ..+.+|++.|.+ .++|.+.. ++.+
T Consensus 401 g~Vr-~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~--~G~~ 476 (733)
T KOG0650|consen 401 GLVR-SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI--FGDR 476 (733)
T ss_pred CeEE-EEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc--ccch
Confidence 4455 788888776666666678888883 66 4433222 234444444433 33333332 2211
Q ss_pred cc---cccc-----ccccCCceEEEEeCCC---C--eEEEeecCccccceEEEcCCCCEEEE
Q 018705 158 DF---YKDM-----AEGKPYGQLRKYDPKL---K--ETTVLHEGFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 158 ~~---~~~~-----~~~~~~g~l~~~d~~~---~--~~~~~~~~~~~~ngi~~~~dg~~lyv 206 (351)
.. ..+. .+..+.+.+..|.... + .+..........+-|.++..|++|-+
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlat 538 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLAT 538 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEE
Confidence 00 1111 2234455667775431 1 13344555566778889999985443
No 265
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=89.32 E-value=2.1 Score=42.44 Aligned_cols=138 Identities=18% Similarity=0.161 Sum_probs=76.7
Q ss_pred ceEEEeeC-CCeEEEEEcCCEEEEEEcCCCeE-------EE-EeecCCccccceEEcC--CCCEEEEeCCCCeEEEcC--
Q 018705 55 EDVSVVVS-KGALYTATRDGWVKYFILHNETL-------VN-WKHIDSQSLLGLTTTK--DGGVILCDNEKGLLKVTE-- 121 (351)
Q Consensus 55 e~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~~-------~~-~~~~~~~p~~gl~~d~--~G~L~v~d~~~gl~~~~~-- 121 (351)
.++.|||- ..+|-|++.+|+|..|....+.. +. +.......+ .|.|.+ .+-|.++. +.-.++++.
T Consensus 631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~as-yd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVAS-YDSTIELWDLA 708 (1012)
T ss_pred eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhh-ccceeeeeehh
Confidence 36677764 46788888898776554322211 11 111122334 556654 22233333 344555552
Q ss_pred CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-c--cccceEE
Q 018705 122 EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-F--YFANGIA 196 (351)
Q Consensus 122 ~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~--~~~ngi~ 196 (351)
++ ...+......+.+++.++||+...|... +|+|..|+|..++..+.... . ...--|.
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~ 771 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTRGARIL 771 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCcceeEE
Confidence 33 3333333367889999999988777643 67899999987654332211 1 1122366
Q ss_pred EcCCCCEEEEEecce
Q 018705 197 LSKNEDFVVVCESWK 211 (351)
Q Consensus 197 ~~~dg~~lyv~~~~~ 211 (351)
+.-||+.+.++..+.
T Consensus 772 wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 772 WACDGRIVIVVGFDK 786 (1012)
T ss_pred EEecCcEEEEecccc
Confidence 777777666655544
No 266
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=25 Score=34.48 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecC-CCCCcc
Q 018705 62 SKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVP-DASFTN 135 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~-~~~~~n 135 (351)
..+.+.|+.... ||.|+..++++...... ...+. .+...++|..++.-...|.+.+.. +- .+.+.. ....+-
T Consensus 187 s~n~laValg~~-vylW~~~s~~v~~l~~~~~~~vt-Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg 264 (484)
T KOG0305|consen 187 SANVLAVALGQS-VYLWSASSGSVTELCSFGEELVT-SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG 264 (484)
T ss_pred cCCeEEEEecce-EEEEecCCCceEEeEecCCCceE-EEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE
Confidence 456777877654 99999988987666554 34556 889999997665555566666652 11 333322 112333
Q ss_pred cEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--EEeecCccccceEEEcCCCCE
Q 018705 136 DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF 203 (351)
Q Consensus 136 ~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~ngi~~~~dg~~ 203 (351)
.++ .++.++.+-+ ..+.+..+|....+. +.+...-....|+.+++|++.
T Consensus 265 ~la--W~~~~lssGs-----------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 265 SLA--WNSSVLSSGS-----------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred EEe--ccCceEEEec-----------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence 333 3344443332 245677666543322 112223345778999999963
No 267
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=88.70 E-value=5.2 Score=36.84 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=23.5
Q ss_pred ceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEE
Q 018705 170 GQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYW 214 (351)
Q Consensus 170 g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~ 214 (351)
..+-.|+.+|++...... .+-.|||--.-...+.|+.+ ++ |+|
T Consensus 340 RTikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLW 385 (499)
T ss_pred ceEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEE
Confidence 357778877776544332 23456665443334666544 34 555
No 268
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=88.68 E-value=17 Score=32.33 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=19.3
Q ss_pred ceEEc-CCCCEEEEeCCCCeEEEc
Q 018705 98 GLTTT-KDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 98 gl~~d-~~G~L~v~d~~~gl~~~~ 120 (351)
|+..| .-|.||++...-+++++.
T Consensus 209 G~VaDdEtG~LYIaeEdvaiWK~~ 232 (364)
T COG4247 209 GMVADDETGFLYIAEEDVAIWKYE 232 (364)
T ss_pred ceeeccccceEEEeeccceeeecc
Confidence 77766 668999999888899988
No 269
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=88.61 E-value=13 Score=38.09 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=59.8
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCC--CeE---EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC-eEE
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHN--ETL---VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-VEA 126 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~--g~~---~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-~~~ 126 (351)
.+.++.|.+..+-++..+|+|..|..-. +.. +.+.-...... +++|..+|.........+++.++. ++ .+.
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 4667776666666777899998886422 111 11111223455 999999996554444557777773 44 444
Q ss_pred ecCCCCCcccEEEccCCcEEEEeC
Q 018705 127 IVPDASFTNDVIAASDGTLYFTVA 150 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~ly~t~~ 150 (351)
++.-..-+-++.++||+.+|....
T Consensus 288 LPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 288 LPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred ccccCCeeEEEEEcCCCCeEEEEe
Confidence 433336678899999998886554
No 270
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.01 E-value=12 Score=36.75 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCc---cccceEEcCCCCEEEEeC--------------CCCeEEEcCCC
Q 018705 62 SKGALYTATRDGWVKYFILHNETL-VNWKHIDSQ---SLLGLTTTKDGGVILCDN--------------EKGLLKVTEEG 123 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~---p~~gl~~d~~G~L~v~d~--------------~~gl~~~~~~g 123 (351)
++|.++++.. +++..+|. .|++ ..+..+.+. .+ .+...++|++++... ...++.++++|
T Consensus 157 ~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG 233 (477)
T PF05935_consen 157 PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTG 233 (477)
T ss_dssp TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS
T ss_pred CCCCEEEecC-CceEEEcC-CCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCC
Confidence 4566666555 56888887 4554 333333322 45 788889998766443 23577887777
Q ss_pred --eEEec--CCC-------------------------CCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEE
Q 018705 124 --VEAIV--PDA-------------------------SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR 173 (351)
Q Consensus 124 --~~~l~--~~~-------------------------~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~ 173 (351)
+..+. +.+ ...|++..++ ++.|.++... ...|+
T Consensus 234 ~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s~V~ 296 (477)
T PF05935_consen 234 EVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QSAVI 296 (477)
T ss_dssp -EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-EEE
T ss_pred CEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ceEEE
Confidence 33321 000 4577888887 6677777643 34799
Q ss_pred EEeCCCCeEEEee
Q 018705 174 KYDPKLKETTVLH 186 (351)
Q Consensus 174 ~~d~~~~~~~~~~ 186 (351)
++|.+++++....
T Consensus 297 ~Id~~t~~i~Wil 309 (477)
T PF05935_consen 297 KIDYRTGKIKWIL 309 (477)
T ss_dssp EEE-TTS-EEEEE
T ss_pred EEECCCCcEEEEe
Confidence 9997788876544
No 271
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=87.78 E-value=18 Score=31.63 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=76.1
Q ss_pred ccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcC-CCe------EEEEeecCCccccceEEcCCCCEEEEeC
Q 018705 40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NET------LVNWKHIDSQSLLGLTTTKDGGVILCDN 112 (351)
Q Consensus 40 l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~-~g~------~~~~~~~~~~p~~gl~~d~~G~L~v~d~ 112 (351)
+..+..|..+ ..+-..|+..| ++.||.-..+ .+++..+. .+. -+.+...+-.-...|.+|+.|-||..+.
T Consensus 23 ~~~a~~iG~g-w~~~~~i~~~P-~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 23 SDRAITIGSG-WNNFRDIAAGP-NGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTP 99 (229)
T ss_dssp HHHSEEEESS--TT-SEEEE-T-TS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEET
T ss_pred cchhhhcCcc-ccccceEEEcC-CceEEEEECC-ceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEecc
Confidence 4455667664 55667888884 7888876644 68877221 111 1233222122222688899999999887
Q ss_pred CCCeEEEcC--CC--------eEEe-cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEE-eCCCC
Q 018705 113 EKGLLKVTE--EG--------VEAI-VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLK 180 (351)
Q Consensus 113 ~~gl~~~~~--~g--------~~~l-~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~ 180 (351)
...+++..+ ++ .+.+ ...-+..+.|..+++|.||.-++. |++++. .|..+
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~ 161 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG 161 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence 767777762 22 1233 222256778899999999977653 567776 34322
Q ss_pred eE-----EEe--ecCccccceEEEcCCCCEEEEEecceeEE
Q 018705 181 ET-----TVL--HEGFYFANGIALSKNEDFVVVCESWKRYW 214 (351)
Q Consensus 181 ~~-----~~~--~~~~~~~ngi~~~~dg~~lyv~~~~~~~~ 214 (351)
.- ..+ ..+.....-|.+++++. ||....+++++
T Consensus 162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~~G~ly 201 (229)
T PF14517_consen 162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKSNGKLY 201 (229)
T ss_dssp T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-ETTEEE
T ss_pred CCccccccceeccCCcccceEEeeCCCCc-EEEEecCCEEe
Confidence 11 111 12233455677778776 66655444443
No 272
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.61 E-value=2.4 Score=40.52 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=31.7
Q ss_pred CcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEe----ecC---------------ccc
Q 018705 133 FTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVL----HEG---------------FYF 191 (351)
Q Consensus 133 ~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~----~~~---------------~~~ 191 (351)
.+.||.++-|. .|||++.. +|.+.+||-+. ...+.+ ..+ -..
T Consensus 313 LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg 375 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG 375 (461)
T ss_dssp ----EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred ceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence 46888899877 59999986 57888886331 111111 111 124
Q ss_pred cceEEEcCCCCEEEEEecc
Q 018705 192 ANGIALSKNEDFVVVCESW 210 (351)
Q Consensus 192 ~ngi~~~~dg~~lyv~~~~ 210 (351)
|+.|.+|.||++|||+++-
T Consensus 376 PqMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 376 PQMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp ---EEE-TTSSEEEEE---
T ss_pred CCeEEEccCCeEEEEEeec
Confidence 7889999999999998753
No 273
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=87.51 E-value=25 Score=32.92 Aligned_cols=102 Identities=12% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C---CC
Q 018705 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E---EG 123 (351)
Q Consensus 48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~---~g 123 (351)
.|...--+++.|+ +.+.+|...-|..|.+||..+|+...-. .++.+.+.+...+.-+|.++......+++. | +|
T Consensus 257 ~GHt~~Vs~V~w~-d~~v~yS~SwDHTIk~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWS-DATVIYSVSWDHTIKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEc-CCCceEeecccceEEEEEeecccceeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 4555556788998 6889999999999999999877553221 223333367777777888887766666665 4 34
Q ss_pred ---eEEecCCCCCcccEEEccCC-cEEEEeCC
Q 018705 124 ---VEAIVPDASFTNDVIAASDG-TLYFTVAS 151 (351)
Q Consensus 124 ---~~~l~~~~~~~n~l~~d~dG-~ly~t~~~ 151 (351)
...+....+.+.++-..|.. ..+++.+.
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence 23344444678888888865 55665543
No 274
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.31 E-value=34 Score=34.22 Aligned_cols=146 Identities=11% Similarity=0.064 Sum_probs=84.0
Q ss_pred cCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC-
Q 018705 47 GEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG- 123 (351)
Q Consensus 47 ~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g- 123 (351)
..|...+-.++++...++.++.|+.|..+..||..+|+-..... +....+..++..+.+.+.......++++ +++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcc
Confidence 34555566788887436677888889999999988886543322 2222144455455555553444566666 355
Q ss_pred -eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCC
Q 018705 124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNE 201 (351)
Q Consensus 124 -~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg 201 (351)
++++......++.+..+ +.+.|+.+. ++.|-.||+.+++.-....+ -.....+.++..
T Consensus 323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~-----------------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~- 382 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD--EPLLVSGSY-----------------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE- 382 (537)
T ss_pred eEEEeccccccEEEEEec--CCEEEEEec-----------------CceEEEEEhhhceeeeeecCCcceEEEEEecCc-
Confidence 45554333566777666 555555543 45678888776654332222 223445666654
Q ss_pred CEEEEEecce--eEE
Q 018705 202 DFVVVCESWK--RYW 214 (351)
Q Consensus 202 ~~lyv~~~~~--~~~ 214 (351)
+.+|-+..+. +.|
T Consensus 383 ~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 383 NRLLSGSLDTTIKVW 397 (537)
T ss_pred ceEEeeeeccceEee
Confidence 4466566555 444
No 275
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=87.06 E-value=1.3 Score=26.91 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=19.0
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILH 81 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~ 81 (351)
.+++++ ++.+|+++.+|+++.+|.+
T Consensus 15 ~~~~v~--~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 15 SSPAVA--GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp S--EEC--TSEEEEE-TTSEEEEEETT
T ss_pred cCCEEE--CCEEEEEcCCCEEEEEeCC
Confidence 455774 7899999999999999975
No 276
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=87.03 E-value=12 Score=34.28 Aligned_cols=159 Identities=11% Similarity=0.084 Sum_probs=81.0
Q ss_pred CcCCCceEEEeeCCCeEEEEEcCCEEEEEEc-CCCeEE-E---Eee--c--CCccccceEEcCCC--CEEEEeCCC--Ce
Q 018705 50 CVNHPEDVSVVVSKGALYTATRDGWVKYFIL-HNETLV-N---WKH--I--DSQSLLGLTTTKDG--GVILCDNEK--GL 116 (351)
Q Consensus 50 ~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~-~~g~~~-~---~~~--~--~~~p~~gl~~d~~G--~L~v~d~~~--gl 116 (351)
.+.+.-+++|++++..||+|... .|..+|. ..|+.. . +.+ . .+-.. .+++.|.. .+-+....+ ||
T Consensus 157 e~taAhsL~Fs~DGeqlfaGykr-cirvFdt~RpGr~c~vy~t~~~~k~gq~giis-c~a~sP~~~~~~a~gsY~q~~gi 234 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGYKR-CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS-CFAFSPMDSKTLAVGSYGQRVGI 234 (406)
T ss_pred hhhhheeEEecCCCCeEeecccc-eEEEeeccCCCCCCcchhhhhcccccccceee-eeeccCCCCcceeeecccceeee
Confidence 36678899999888899998754 4777775 334321 1 111 0 11122 45666543 233444333 33
Q ss_pred EEEcCCC-eEEecCCCCCcccEEEccCCcEEEEeCCC-----ccCCccc------------------cc------c-ccc
Q 018705 117 LKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVAST-----KYTPTDF------------------YK------D-MAE 165 (351)
Q Consensus 117 ~~~~~~g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~~-----~~~~~~~------------------~~------~-~~~ 165 (351)
+.-+..+ ..++....+.+..+...+||+-+|+-... .+.++.. .+ . +..
T Consensus 235 y~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las 314 (406)
T KOG2919|consen 235 YNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS 314 (406)
T ss_pred EecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec
Confidence 3322233 45444434667777777777544333210 0111111 01 1 122
Q ss_pred ccCCceEEEEeCCC-Ce-EEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 166 GKPYGQLRKYDPKL-KE-TTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 166 ~~~~g~l~~~d~~~-~~-~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
|...|.|.+||.++ |+ +..+...-...||++++|--. +..+.+++
T Consensus 315 G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 315 GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred cCCCccEEEEecCCCCCcccccccccccccceecCcccc-eeeeccCc
Confidence 33456777887664 33 333332334678899988744 44444444
No 277
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=86.43 E-value=23 Score=31.32 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=44.3
Q ss_pred eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEE-cCCCCEEEEeCCCCeEEEc
Q 018705 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTT-TKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~-d~~G~L~v~d~~~gl~~~~ 120 (351)
++-.||+++.++.+..|+.++.+|..+|++++. .....-.+ .++- .+++.++-+. ..|.+|++
T Consensus 119 am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~-EDGtvRvW 183 (325)
T KOG0649|consen 119 AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGA-EDGTVRVW 183 (325)
T ss_pred eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecC-CCccEEEE
Confidence 778898899888878999999999999998643 32223334 4444 3556666554 45777877
No 278
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.32 E-value=29 Score=32.55 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=53.4
Q ss_pred cccCCceEEEEeCCCCeEEEeec-C--ccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceE
Q 018705 165 EGKPYGQLRKYDPKLKETTVLHE-G--FYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNIN 238 (351)
Q Consensus 165 ~~~~~g~l~~~d~~~~~~~~~~~-~--~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~ 238 (351)
+.+..+.|..||+..++. .+.. . -.....+++.|+|+++|++++.+ .|.+...+. .-.+..+..|.+..+.
T Consensus 221 t~T~~hqvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih 297 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQRR-PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--LGCGLKGITGSIRSIH 297 (412)
T ss_pred EEecceeEEEecCcccCc-ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--eccccCCccCCcceEE
Confidence 444567899999986543 3321 1 12234678899999999999877 455433211 1111224556678888
Q ss_pred ECCCCCEEEEEecCC
Q 018705 239 LAPDGSFWIGLIKMN 253 (351)
Q Consensus 239 ~d~~G~lwva~~~~~ 253 (351)
.++.+.+...++-.|
T Consensus 298 ~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDR 312 (412)
T ss_pred EcCCCceEEeeccce
Confidence 888877777766544
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=86.05 E-value=15 Score=34.48 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=61.6
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-e-EEEE--eecCCccccceEEcCCC-CEEEEeCCCCeEEEc--C-C-C
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE-T-LVNW--KHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT--E-E-G 123 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~-~~~~--~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~--~-~-g 123 (351)
.+..+...+++..+++++...+.+.++.... + .+.+ .....+|. .+.+..+. ...|++..+..+.++ . + +
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 4555566655667788887777555543222 1 2222 12234677 88887655 577788777777766 2 2 5
Q ss_pred -eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 124 -VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 124 -~~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
.+.+........++++++|+.+.+|...
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDR 171 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADR 171 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecC
Confidence 4444444578899999999988777653
No 280
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=9.7 Score=40.29 Aligned_cols=130 Identities=12% Similarity=0.164 Sum_probs=65.8
Q ss_pred CeEEEEEcCCEEEEEEcCC----CeEE---EEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC-CC-eEEecC-CCC
Q 018705 64 GALYTATRDGWVKYFILHN----ETLV---NWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-EG-VEAIVP-DAS 132 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~----g~~~---~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-~g-~~~l~~-~~~ 132 (351)
|.+--|..||.|..||+.. ++.. +.....+... |+.|.+.+ ++..+....|-+.++. .. .+.+.. ...
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 3455678899999998743 1111 2233446667 99998766 4665554455444442 22 111111 112
Q ss_pred CcccEE-EccCC---cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-EEEeecCc--cccceEEEcCCCC-EE
Q 018705 133 FTNDVI-AASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGF--YFANGIALSKNED-FV 204 (351)
Q Consensus 133 ~~n~l~-~d~dG---~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~~~--~~~ngi~~~~dg~-~l 204 (351)
.+.+|. ++.+. +|+.+ +..+|+...||.+.++ +..+.+.. ..-++++++|+.. .+
T Consensus 160 ~~~eI~~lsWNrkvqhILAS-----------------~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILAS-----------------GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred CcccceEeccchhhhHHhhc-----------------cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 333322 22221 22222 2336778888876432 22222211 2345899999987 45
Q ss_pred EEEecce
Q 018705 205 VVCESWK 211 (351)
Q Consensus 205 yv~~~~~ 211 (351)
+++..+.
T Consensus 223 ~~As~dd 229 (1049)
T KOG0307|consen 223 LVASGDD 229 (1049)
T ss_pred eeecCCC
Confidence 5554433
No 281
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=85.68 E-value=1.7 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCEEEEEEcCCCeE
Q 018705 62 SKGALYTATRDGWVKYFILHNETL 85 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g~~ 85 (351)
.++.+|++..+|.++.+|.++|+.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcE
Confidence 367899999999999999988865
No 282
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.52 E-value=33 Score=33.37 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCEEEEEEcCCC-eEEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC-CC-eEEec-CC--CCCcccEEEccCC-
Q 018705 72 DGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-EG-VEAIV-PD--ASFTNDVIAASDG- 143 (351)
Q Consensus 72 ~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-~g-~~~l~-~~--~~~~n~l~~d~dG- 143 (351)
.|.|..-...++ +...+....+....-+.+.+.. .|.+.....|++.++. +| -..+. .. ..-..+||++|..
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE 221 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence 344444444333 2234433322221134555544 3455555667777775 55 22211 11 1456789999976
Q ss_pred cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCcccc-ceEEEcCCCCEEEEEecce
Q 018705 144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFA-NGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~-ngi~~~~dg~~lyv~~~~~ 211 (351)
.|+++... +-+|+.||-..+.. ..+.. ..| ..++|+++|.+|......+
T Consensus 222 ~l~vsVG~-----------------Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 222 ALLVSVGY-----------------DKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred ceEEEecc-----------------cceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCc
Confidence 57777665 34799998654332 11111 122 3588999997666666555
No 283
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=85.41 E-value=2.3 Score=26.30 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=25.3
Q ss_pred CCEEEEeCCCC-eEEEc-CCC--eEEe-cCCCCCcccEEEcc
Q 018705 105 GGVILCDNEKG-LLKVT-EEG--VEAI-VPDASFTNDVIAAS 141 (351)
Q Consensus 105 G~L~v~d~~~g-l~~~~-~~g--~~~l-~~~~~~~n~l~~d~ 141 (351)
|+||.+|.... .+... .+| .+++ ......|++|++|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 46899998877 44443 466 4444 44458999999985
No 284
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.14 E-value=32 Score=32.43 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=34.7
Q ss_pred ceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEe--cCCCCCcccEEEccCCcEEEEeCC
Q 018705 98 GLTTTKDGGVILCDNEKGLLKVTE-EG-VEAI--VPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 98 gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l--~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
.+++..+|.+..+-..+|.+|+.+ .. ...+ ......++|+.+++||.+.++-+.
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~ 206 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA 206 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC
Confidence 567777777766665667777763 22 1111 111167999999999987776654
No 285
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=84.59 E-value=27 Score=32.07 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=34.1
Q ss_pred CCeEEEEEECCCCCcccceeEEE--EECCEEEEEecCCCeEEEEeCCCC-CC
Q 018705 298 DGKIIRDFNDPDATYISFVTSAA--EFDGNLYLASLQSNFIGILPLDGP-EP 346 (351)
Q Consensus 298 ~g~~~~~~~~~~g~~~~~~~~~~--~~~g~L~ig~~~~~~i~~~~~~~~-~~ 346 (351)
+++.+..+..+.| .+|-+. +++++||.|....+.|...+++.+ .|
T Consensus 239 ~~~pl~llggh~g----GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 239 GRRPLQLLGGHGG----GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred CCCceeeecccCC----CeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 4566666665554 466655 567899999999999999999987 44
No 286
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=84.57 E-value=57 Score=34.78 Aligned_cols=143 Identities=10% Similarity=0.180 Sum_probs=87.0
Q ss_pred CCCceEEEeeCCCeE-EEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcC-CCCEEEEeCCCCeEEEcC-CC--eE
Q 018705 52 NHPEDVSVVVSKGAL-YTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG--VE 125 (351)
Q Consensus 52 ~~pe~i~~d~~~g~l-yv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~-~g--~~ 125 (351)
..+..+.++..++.+ |....+..|.+.......... .......+. +++.|. .+++|.+|.......+.. +| ..
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~ 515 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRK 515 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCcee
Confidence 344555555445554 455567777777653222222 222234577 999995 458999998776655553 55 33
Q ss_pred EecCC-CCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEeecCccccceEEEcCCCC
Q 018705 126 AIVPD-ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLHEGFYFANGIALSKNED 202 (351)
Q Consensus 126 ~l~~~-~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~ngi~~~~dg~ 202 (351)
++... ...|..++++| .|.+|+++.... . ++-+-..+. .....+..+...|||++++-..+
T Consensus 516 vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~---------------~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~ 579 (877)
T KOG1215|consen 516 VLVSKDLDLPRSIAVDPEKGLMFWTDWGQP---------------P-RIERASLDGSERAVLVTNGILWPNGLTIDYETD 579 (877)
T ss_pred EEEecCCCCccceeeccccCeeEEecCCCC---------------c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecc
Confidence 33333 36899999999 478899987621 0 222222222 22233344567899999998877
Q ss_pred EEEEEecce
Q 018705 203 FVVVCESWK 211 (351)
Q Consensus 203 ~lyv~~~~~ 211 (351)
.+|+.+...
T Consensus 580 ~~yw~d~~~ 588 (877)
T KOG1215|consen 580 RLYWADAKL 588 (877)
T ss_pred eeEEEcccC
Confidence 899988655
No 287
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=84.30 E-value=8 Score=33.96 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=46.6
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe--e----cCCccccceEEcC-CCCEEEEeCCCCeEEEcC
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK--H----IDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE 121 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~--~----~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~ 121 (351)
--+|.+-|..|.||--...|+||.+|+.+|...... . ..+... ++.|+| -++|-|......-+|+++
T Consensus 29 l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~-gvDFNP~aDRlRvvs~~GqNlR~np 102 (236)
T PF14339_consen 29 LVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAF-GVDFNPAADRLRVVSNTGQNLRLNP 102 (236)
T ss_pred EEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceE-EEecCcccCcEEEEccCCcEEEECC
Confidence 347788889999998788899999999999876551 1 123345 777775 356766554445566664
No 288
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=84.22 E-value=33 Score=31.23 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=79.6
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEecCC
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPD 130 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l~~~ 130 (351)
+-.++-+++..+.|.+++-||.+..++............ +.|.+..+|-.+-.+|+++..+.+.++|. .+ ..++...
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~-~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH-GAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec-CCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence 345788888889999999999888887644332211122 34544777877778999888777888884 55 4444444
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce-EEEcCCCCEEEEEec
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG-IALSKNEDFVVVCES 209 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng-i~~~~dg~~lyv~~~ 209 (351)
......|.-...-...++. .+++.+-.||+.+... ...+..++- -+.+-.++.|.|+..
T Consensus 94 ~~~i~ci~~~~~~~~vIsg-----------------sWD~~ik~wD~R~~~~---~~~~d~~kkVy~~~v~g~~LvVg~~ 153 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISG-----------------SWDKTIKFWDPRNKVV---VGTFDQGKKVYCMDVSGNRLVVGTS 153 (323)
T ss_pred CCceEEEEeeccCCeEEEc-----------------ccCccEEEEecccccc---ccccccCceEEEEeccCCEEEEeec
Confidence 3444455544322233332 3356788888763211 111111111 134445666888655
Q ss_pred ce
Q 018705 210 WK 211 (351)
Q Consensus 210 ~~ 211 (351)
++
T Consensus 154 ~r 155 (323)
T KOG1036|consen 154 DR 155 (323)
T ss_pred Cc
Confidence 55
No 289
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=26 Score=30.31 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=78.2
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe---ecCccccceEEEcCCCCEEEEEe
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFVVVCE 208 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngi~~~~dg~~lyv~~ 208 (351)
.+..++..+. |.++.+... |+ ...|.++|..+|+...- ...-.+..||.-..| ++|.-.
T Consensus 46 sfTQGL~~~~-g~i~esTG~--yg-------------~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd--~~y~LT 107 (262)
T COG3823 46 SFTQGLEYLD-GHILESTGL--YG-------------FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD--YFYQLT 107 (262)
T ss_pred hhhcceeeeC-CEEEEeccc--cc-------------cceeEEEeccCceEEEEeecCCccccccceeeccc--eEEEEE
Confidence 4566666653 477777654 21 23688898887765321 112234556665544 466644
Q ss_pred cce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCC
Q 018705 209 SWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD 286 (351)
Q Consensus 209 ~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
... .|..+..+......| ..+|---|++.|.+ +||.+.+..
T Consensus 108 w~egvaf~~d~~t~~~lg~~--~y~GeGWgLt~d~~-~LimsdGsa---------------------------------- 150 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRF--SYEGEGWGLTSDDK-NLIMSDGSA---------------------------------- 150 (262)
T ss_pred eccceeEEEChHHhhhhccc--ccCCcceeeecCCc-ceEeeCCce----------------------------------
Confidence 333 232221111111111 12232346776644 599887642
Q ss_pred CceEEEEEECCCCeEEEEEEC-CCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705 287 AGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 343 (351)
Q Consensus 287 ~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~ 343 (351)
.+..-||++=.....++. -+|.+...+..+...+|.||.--+..++|.|++..+
T Consensus 151 ---tL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 151 ---TLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred ---EEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence 223334421111111111 134444555566666788888888888888887543
No 290
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=83.92 E-value=0.86 Score=27.64 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.8
Q ss_pred CCcccEEEccCCcEEEEeC
Q 018705 132 SFTNDVIAASDGTLYFTVA 150 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~ 150 (351)
..+++|++|++|++|++-.
T Consensus 13 ~~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eeEEEEEECCCCCEEEEEe
Confidence 4588999999999998764
No 291
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=83.84 E-value=47 Score=32.74 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC--eEEecCCCCCcccEE
Q 018705 63 KGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVI 138 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~~l~~~~~~~n~l~ 138 (351)
.+.+.+.+.||++..++. .|+++... ..++-.. .=+.++||.-.++....|.++++ +.| ..+++.....+.+++
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 345777788999988876 67775432 2223233 44556788766666677899998 588 444555546788888
Q ss_pred EccCC-cEEEEeC
Q 018705 139 AASDG-TLYFTVA 150 (351)
Q Consensus 139 ~d~dG-~ly~t~~ 150 (351)
.+|+- .+.++..
T Consensus 153 W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG 165 (737)
T ss_pred ECCCCCceEEecC
Confidence 99875 5665554
No 292
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=83.83 E-value=0.99 Score=33.68 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=11.2
Q ss_pred CChhhHHHHHHHHHHHHH
Q 018705 1 MAPKSFLLACLLAFTVQI 18 (351)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (351)
|++|++++.+++++++++
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 999996666555433333
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.32 E-value=53 Score=32.99 Aligned_cols=124 Identities=9% Similarity=0.064 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-C-C---eEEecCCCCCcc
Q 018705 62 SKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-G---VEAIVPDASFTN 135 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-g---~~~l~~~~~~~n 135 (351)
..+.+.+|+.|.+|..++-.++ ++..|.....-.. .|++.|..=..++.+..-+++++. + + .+++.....++.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR-~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIR-SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeecccccee-eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 5677888999999999987676 4556655444455 788877766666666666777774 3 3 344544457899
Q ss_pred cEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC
Q 018705 136 DVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202 (351)
Q Consensus 136 ~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~ 202 (351)
++++-|.. +-+.+.+-.+ +=.||.+....-.. .+.......|+|.+-+-|+
T Consensus 145 qv~fnPkD~ntFaS~sLDr---------------TVKVWslgs~~~nf-Tl~gHekGVN~Vdyy~~gd 196 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDR---------------TVKVWSLGSPHPNF-TLEGHEKGVNCVDYYTGGD 196 (794)
T ss_pred EEEecCCCccceeeeeccc---------------cEEEEEcCCCCCce-eeeccccCcceEEeccCCC
Confidence 99999965 5666655311 11344443221112 2234456678888877664
No 294
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.28 E-value=43 Score=31.92 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred eEEEEeCCCCeEEEeecCccc--cceEEEcCCCCEEEEEecce-----------eEEee--cCCCCc-eeEEeccCCCC-
Q 018705 171 QLRKYDPKLKETTVLHEGFYF--ANGIALSKNEDFVVVCESWK-----------RYWLK--GDRAGI-LDAFIENLPGG- 233 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~~~~~~--~ngi~~~~dg~~lyv~~~~~-----------~~~i~--~~~~~~-~~~~~~~~~g~- 233 (351)
.|+.+|..+|+.. .+.+.. ..++++.+|++.+|++.... +++.. +....+ ..+|-+.-+..
T Consensus 151 ~l~v~Dl~tg~~l--~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~ 228 (414)
T PF02897_consen 151 TLRVFDLETGKFL--PDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFW 228 (414)
T ss_dssp EEEEEETTTTEEE--EEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTS
T ss_pred EEEEEECCCCcCc--CCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcE
Confidence 5889999888553 233222 22399999998777765322 22222 111111 23443322111
Q ss_pred CCceEECCCCCE-EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC----eEEEEEECC
Q 018705 234 PDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG----KIIRDFNDP 308 (351)
Q Consensus 234 pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g----~~~~~~~~~ 308 (351)
--++..+++|++ .+..... .....+..++..++ .....+..+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~---------------------------------~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSG---------------------------------TSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESS---------------------------------SSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred EEEEEecCcccEEEEEEEcc---------------------------------ccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 224667888874 4443331 11245777776322 123333322
Q ss_pred CCCcccceeEEEEECCEEEEEec---CCCeEEEEeCCCCCC
Q 018705 309 DATYISFVTSAAEFDGNLYLASL---QSNFIGILPLDGPEP 346 (351)
Q Consensus 309 ~g~~~~~~~~~~~~~g~L~ig~~---~~~~i~~~~~~~~~~ 346 (351)
.. .....+...++.+|+-+- ...+|.++++....+
T Consensus 276 ~~---~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 276 ED---GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp SS---S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred CC---ceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence 21 123344455888998663 346788887776653
No 295
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.25 E-value=58 Score=33.41 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=74.7
Q ss_pred CeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-------CC--eEEecCC---
Q 018705 64 GALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-------EG--VEAIVPD--- 130 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-------~g--~~~l~~~--- 130 (351)
..+.+|..+|.+..+|...... +++....+-.. .|+..+|+.=+++.+....++++. .| .+.+.-.
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIW-SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhcccccee-eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 3344455555555555433221 11111122233 455556665555555555555541 13 1222111
Q ss_pred -C---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-ceEEEcCCCCEEE
Q 018705 131 -A---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVV 205 (351)
Q Consensus 131 -~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngi~~~~dg~~ly 205 (351)
. ..+-++.++|||.+....-- +..+-.|-.++-+...-..+-.-| -++-+|+|++.+.
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLL-----------------dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLL-----------------DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV 566 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEec-----------------cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEE
Confidence 0 44556778899976543321 223333333333333222332223 4688999999444
Q ss_pred EEecce--eEEeecCCCCce--eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 206 VCESWK--RYWLKGDRAGIL--DAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 206 v~~~~~--~~~i~~~~~~~~--~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
-++.++ ++|-- ..|.. ..|+- ....-.+.+=++-+++.+++.
T Consensus 567 TgSADKnVKiWGL--dFGDCHKS~fAH--dDSvm~V~F~P~~~~FFt~gK 612 (888)
T KOG0306|consen 567 TGSADKNVKIWGL--DFGDCHKSFFAH--DDSVMSVQFLPKTHLFFTCGK 612 (888)
T ss_pred eccCCCceEEecc--ccchhhhhhhcc--cCceeEEEEcccceeEEEecC
Confidence 455455 67732 33442 22321 001123445566666655543
No 296
>PHA02713 hypothetical protein; Provisional
Probab=82.38 E-value=58 Score=32.75 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=54.5
Q ss_pred EEEEEEcCCCeEEEEeecCCccc-cceEEcCCCCEEEEeCC-------CCeEEEcC-CC-eEEecCCC-CCcccEEEccC
Q 018705 74 WVKYFILHNETLVNWKHIDSQSL-LGLTTTKDGGVILCDNE-------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAASD 142 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~~~p~-~gl~~d~~G~L~v~d~~-------~gl~~~~~-~g-~~~l~~~~-~~~n~l~~d~d 142 (351)
.+.++|+.++++........... .+.+. -++.||+..+. ..+.++++ +. ...++.-. ..-..-+..-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 47889998888766543322111 03333 36788887542 12567775 44 44433221 12222334457
Q ss_pred CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (351)
Q Consensus 143 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 186 (351)
|.||+--.... ......+.+|||.+++.+.+.
T Consensus 352 g~IYviGG~~~------------~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 352 DTIYAIGGQNG------------TNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEECCcCC------------CCCCceEEEEECCCCeEEECC
Confidence 88998654210 001236899999988776654
No 297
>PRK13616 lipoprotein LpqB; Provisional
Probab=82.30 E-value=46 Score=33.73 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=68.4
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCC--CeEEEEe--------ecCCccccceEEcCCC-CEEEEeCCCCeEE---Ec
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHN--ETLVNWK--------HIDSQSLLGLTTTKDG-GVILCDNEKGLLK---VT 120 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~--g~~~~~~--------~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~---~~ 120 (351)
....|+|+++.+|+.....++.++...+ ++..... ...+.+. .+++.+|| ++.+... +.++. +.
T Consensus 400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Is-sl~wSpDG~RiA~i~~-g~v~Va~Vvr 477 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPIS-ELQLSRDGVRAAMIIG-GKVYLAVVEQ 477 (591)
T ss_pred CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcC-eEEECCCCCEEEEEEC-CEEEEEEEEe
Confidence 4567777667777654322343332211 1221110 1123456 88889999 4443332 23333 12
Q ss_pred -CCC-eEE-----ecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc
Q 018705 121 -EEG-VEA-----IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA 192 (351)
Q Consensus 121 -~~g-~~~-----l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ 192 (351)
.+| .+. +.... ..+.++....++.|.+.... ..-.+++++.++...+.+..+-..+
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~----------------~~~~v~~v~vDG~~~~~~~~~n~~~ 541 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD----------------PEHPVWYVNLDGSNSDALPSRNLSA 541 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEEEEecC----------------CCCceEEEecCCccccccCCCCccC
Confidence 244 332 22222 23577778888887765432 1224777776643333212211123
Q ss_pred ceEEEcCCCCEEEEEecceeEEe
Q 018705 193 NGIALSKNEDFVVVCESWKRYWL 215 (351)
Q Consensus 193 ngi~~~~dg~~lyv~~~~~~~~i 215 (351)
..+++......+|+++..+.+.+
T Consensus 542 ~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 542 PVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ceEEEecCCceEEEEcCCceEEe
Confidence 33444433346888877664443
No 298
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.85 E-value=39 Score=33.26 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=62.2
Q ss_pred EEEEEcCCEEEEEEcCCCeEEEEeecCCccccc--eEEc--CCCCEEEEeCCCCeEEEcC-CC--eEEecCCCCCcccEE
Q 018705 66 LYTATRDGWVKYFILHNETLVNWKHIDSQSLLG--LTTT--KDGGVILCDNEKGLLKVTE-EG--VEAIVPDASFTNDVI 138 (351)
Q Consensus 66 lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~g--l~~d--~~G~L~v~d~~~gl~~~~~-~g--~~~l~~~~~~~n~l~ 138 (351)
+.-|+..|.|+.++...|++.........+. . ...+ .-|.+|-++....+..+.. ++ +..+......+..++
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 3447788999999888888765443333222 2 2222 3356666655444444443 44 333322236788999
Q ss_pred EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc
Q 018705 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF 189 (351)
Q Consensus 139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~ 189 (351)
+.+||.+..+.+. .|-.||-+++++.....+.
T Consensus 152 is~D~~~l~~as~-------------------~ik~~~~~~kevv~~ftgh 183 (541)
T KOG4547|consen 152 ISPDGKILLTASR-------------------QIKVLDIETKEVVITFTGH 183 (541)
T ss_pred EcCCCCEEEeccc-------------------eEEEEEccCceEEEEecCC
Confidence 9999988776543 5777777777665544443
No 299
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.60 E-value=4.3 Score=38.79 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705 169 YGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 245 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l 245 (351)
+|.|..|.|+..+.-+-. -.....++|+++++|.++.-+-.++ ++|=- ....+...+. .|-...++.++..|.|
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl-R~~~ql~t~~--tp~~a~~ls~SqkglL 348 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL-RNFYQLHTYR--TPHPASNLSLSQKGLL 348 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee-ccccccceee--cCCCccccccccccce
Confidence 577888888765432111 1123457899999997443333333 55521 1112222222 1222467788888876
Q ss_pred EEEEe
Q 018705 246 WIGLI 250 (351)
Q Consensus 246 wva~~ 250 (351)
=++.+
T Consensus 349 A~~~G 353 (545)
T KOG1272|consen 349 ALSYG 353 (545)
T ss_pred eeecC
Confidence 66654
No 300
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=81.25 E-value=23 Score=33.66 Aligned_cols=118 Identities=11% Similarity=0.032 Sum_probs=69.5
Q ss_pred ceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCC--eEEEEe-ecCCccccceEEcCCCCEEEEe-CCCCeE
Q 018705 43 LTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNE--TLVNWK-HIDSQSLLGLTTTKDGGVILCD-NEKGLL 117 (351)
Q Consensus 43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g--~~~~~~-~~~~~p~~gl~~d~~G~L~v~d-~~~gl~ 117 (351)
...+..+.-..-|+++|.+....+|.+.. ++.++.+|.+++ +..... ...+..+ .++|.+-+...+++ +..+.+
T Consensus 219 p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn-~~~fnp~~~~ilAT~S~D~tV 297 (422)
T KOG0264|consen 219 PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN-CVAFNPFNEFILATGSADKTV 297 (422)
T ss_pred ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee-EEEeCCCCCceEEeccCCCcE
Confidence 34444554455677788777778887665 677888887643 222222 2234456 89999866544444 334555
Q ss_pred EEc-C---CC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC
Q 018705 118 KVT-E---EG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK 178 (351)
Q Consensus 118 ~~~-~---~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 178 (351)
++. . .. ...+......+..|..+|+. ++..+... +++|..||.+
T Consensus 298 ~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~-----------------D~rl~vWDls 347 (422)
T KOG0264|consen 298 ALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT-----------------DRRLNVWDLS 347 (422)
T ss_pred EEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc-----------------CCcEEEEecc
Confidence 554 2 22 34443333567778888865 56665543 5678888764
No 301
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=81.15 E-value=2.8 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.2
Q ss_pred CeEEEEEcCCEEEEEEcCCCeEE
Q 018705 64 GALYTATRDGWVKYFILHNETLV 86 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~~ 86 (351)
|.+|+++.+|.|+-+|.++|+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEE
Confidence 57899999999999999999774
No 302
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=81.12 E-value=6.5 Score=39.15 Aligned_cols=102 Identities=9% Similarity=0.022 Sum_probs=66.3
Q ss_pred hccCCCccccccCCCCC-CCcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccc
Q 018705 19 FFSLSVSSLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSL 96 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~p~-~~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~ 96 (351)
+.-|+-|-....|++|. ..+.|++-|.+.-++-...|++-+.|-.+.+.+....|.++.+|..+++... .........
T Consensus 95 LAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQ 174 (1012)
T KOG1445|consen 95 LATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQ 174 (1012)
T ss_pred hhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhh
Confidence 44566676666799995 7889988887766656678899888755555555566889999987765422 122222234
Q ss_pred cceEEcCCCCEEEEeCC-CCeEEEcC
Q 018705 97 LGLTTTKDGGVILCDNE-KGLLKVTE 121 (351)
Q Consensus 97 ~gl~~d~~G~L~v~d~~-~gl~~~~~ 121 (351)
......||.|..+... ..+..+++
T Consensus 175 -Sa~WseDG~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 175 -SADWSEDGKLLATSCKDKQIRIFDP 199 (1012)
T ss_pred -ccccccCCceEeeecCCcceEEeCC
Confidence 5566678877665433 34555554
No 303
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=80.53 E-value=46 Score=30.35 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=60.3
Q ss_pred CccccceEEcC-CCCEEEEeCCCCeEEEcC---CC-eEE--ecCCCCCcccEEEccCCcEEEEeCCCccCCccccccccc
Q 018705 93 SQSLLGLTTTK-DGGVILCDNEKGLLKVTE---EG-VEA--IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE 165 (351)
Q Consensus 93 ~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~---~g-~~~--l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~ 165 (351)
.... .|+|.+ ...+.++.+..+.+|+++ +| ..- ......-+-+++...||+.-|+...
T Consensus 28 DsIS-~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~-------------- 92 (347)
T KOG0647|consen 28 DSIS-ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC-------------- 92 (347)
T ss_pred cchh-eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc--------------
Confidence 3445 899998 567887877777777763 34 211 1111145678889999964444332
Q ss_pred ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC-EEEEEecce---eEE
Q 018705 166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED-FVVVCESWK---RYW 214 (351)
Q Consensus 166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~-~lyv~~~~~---~~~ 214 (351)
++.+-.||..++++..+...-.-...+.+-+... .+.++.++. +||
T Consensus 93 ---Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 93 ---DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred ---CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 4678889988888877653322222333322222 244544443 788
No 304
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.87 E-value=83 Score=32.98 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEE
Q 018705 63 KGALYTATRDGWVKYFILHNETLV 86 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~ 86 (351)
++++|+++.|++++.+|.++|+..
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEE
Confidence 458999999999999999999764
No 305
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.80 E-value=14 Score=37.50 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=58.2
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc---CCC-eEE
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VEA 126 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~~g-~~~ 126 (351)
..-|++.++..+.++-.|..+|.|-.||...++. +.....-.++. .+.|.+-|.....-...+-+.++ +.| .+.
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEEeccccccccceehhhhccCceee
Confidence 4458999997777778889999999999876653 22222222334 55566666544221112223333 366 565
Q ss_pred ecCCCCCcccEEEccCCcEEEEeC
Q 018705 127 IVPDASFTNDVIAASDGTLYFTVA 150 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~ly~t~~ 150 (351)
+.......+.+.+.|+|+ |+.+.
T Consensus 150 ~~s~~~vv~~l~lsP~Gr-~v~~g 172 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGR-WVASG 172 (825)
T ss_pred ecCCcceeEEEeecCCCc-eeecc
Confidence 554435677788999995 44443
No 306
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=79.68 E-value=77 Score=32.50 Aligned_cols=187 Identities=14% Similarity=0.132 Sum_probs=86.5
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCC--C-CEEEEeCCCCeEEEcCCC---
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKD--G-GVILCDNEKGLLKVTEEG--- 123 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~--G-~L~v~d~~~gl~~~~~~g--- 123 (351)
..|-.+++++|++..|-.|...|.|..++...-+...+ ........ .|.+... + .|.......+++++..-+
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil-cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL-CLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE-EEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 45778999998888888898889888888754332111 11222333 4444321 1 344444444555554211
Q ss_pred --eEEecCCCCCcccEEEccCC--cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705 124 --VEAIVPDASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK 199 (351)
Q Consensus 124 --~~~l~~~~~~~n~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~ 199 (351)
..++-.....+..+-+..+| .=.++....+- .++........|+++.-...+-.. ..-.-++++|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADks----imFr~~qk~~~g~~f~r~t~t~~k-------tTlYDm~Vdp 606 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS----IMFRVNQKASSGRLFPRHTQTLSK-------TTLYDMAVDP 606 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchh----hheehhccccCceecccccccccc-------ceEEEeeeCC
Confidence 22222222456666666555 33455443110 011111111223332211111000 1123467888
Q ss_pred CCCEEEEEecceeEEeecC-CCCceeEEecc--CCCCCCceEECCCCCEEEEEe
Q 018705 200 NEDFVVVCESWKRYWLKGD-RAGILDAFIEN--LPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 200 dg~~lyv~~~~~~~~i~~~-~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~ 250 (351)
.-+.+...--++.+.+.+- ...+.+.|... ..|-+-.+..|+.|. |+++.
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atS 659 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI-YLATS 659 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc-EEEEe
Confidence 8774443332333333221 12234455432 224444568899994 55553
No 307
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=77.25 E-value=56 Score=29.97 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=51.1
Q ss_pred EEcCCEEEEEEcCCCeE---EEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEc--CCC--eEEecCCC--CCcccEE
Q 018705 69 ATRDGWVKYFILHNETL---VNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT--EEG--VEAIVPDA--SFTNDVI 138 (351)
Q Consensus 69 ~~~~g~I~~~d~~~g~~---~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~--~~g--~~~l~~~~--~~~n~l~ 138 (351)
|..-|.|...|....+. ..+........ .+++..+|.+..+.+.+| ++|+. .+| +..+..+. ..+..++
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Ia-cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIA-CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCcee-EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 45567777777643333 23333334455 788899998887665554 67776 366 55565443 6788999
Q ss_pred EccCCcEEEEeCC
Q 018705 139 AASDGTLYFTVAS 151 (351)
Q Consensus 139 ~d~dG~ly~t~~~ 151 (351)
++||.. |++.++
T Consensus 234 FSp~~s-~LavsS 245 (346)
T KOG2111|consen 234 FSPNSS-WLAVSS 245 (346)
T ss_pred eCCCcc-EEEEEc
Confidence 999984 444444
No 308
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=76.93 E-value=21 Score=36.26 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=44.8
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEe---ecCCccccceEEcCCCCEEEEeCCC-CeEEEc
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWK---HIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT 120 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~---~~~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~ 120 (351)
-++++||..+.+.++..|.+|..++...|+.+ .|. ...+.+. -+..||.|...++.... .+-.++
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-Kv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-KVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-EEEECCCccEEEEeecCCceEEEE
Confidence 37888887788888889999999998787654 332 2236677 88889988655554333 344444
No 309
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=76.79 E-value=98 Score=32.12 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=72.6
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-e-c---CCccccceEEcCCCCEEEEeCCCCeEEEcC-C---C-
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-H-I---DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E---G- 123 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~-~---~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~---g- 123 (351)
|+.|...+ .+.+..-..+..++.++...+. +... . . ...+....++.+.++..++....|-+.++. - +
T Consensus 163 ~~~I~~~~-~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 163 PKSIVDNN-SGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred CccEEEcC-CceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 88998884 5555444444557777654433 2111 0 0 011121567778887666544445555552 1 1
Q ss_pred ---eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccc-cceEEEcC
Q 018705 124 ---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF-ANGIALSK 199 (351)
Q Consensus 124 ---~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~-~ngi~~~~ 199 (351)
.+.+.=....++++++++||....+-.. .+-+.+|...|++. .+...+.. .-+|.++|
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~-----------------E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGR-----------------EGVLVLWQLETGKK-QFLPRLGSPILHIVVSP 302 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeeccc-----------------ceEEEEEeecCCCc-ccccccCCeeEEEEEcC
Confidence 2222111157899999999954444322 34577777777774 44444443 46899999
Q ss_pred CCC
Q 018705 200 NED 202 (351)
Q Consensus 200 dg~ 202 (351)
|++
T Consensus 303 ds~ 305 (792)
T KOG1963|consen 303 DSD 305 (792)
T ss_pred CCC
Confidence 998
No 310
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.68 E-value=89 Score=31.56 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=68.5
Q ss_pred CCeEEE-EEcC------CEEEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCC------CeEEEcCC-C-eEE
Q 018705 63 KGALYT-ATRD------GWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEK------GLLKVTEE-G-VEA 126 (351)
Q Consensus 63 ~g~lyv-~~~~------g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~------gl~~~~~~-g-~~~ 126 (351)
+|.+|+ |..+ ..+.++|+.++++.........-. +..+. =+|.||+..... .+-++++. . .+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 567776 3334 357888888887765433322111 22222 367888875443 25555642 2 443
Q ss_pred ecCCCCCcccE-EEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--cccceEEEcCCCCE
Q 018705 127 IVPDASFTNDV-IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDF 203 (351)
Q Consensus 127 l~~~~~~~n~l-~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngi~~~~dg~~ 203 (351)
.+.-...-.+. +..-+|.||+.-...... ..-..+.+|||.+++.+....-. ..-.|++.- ++ .
T Consensus 411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~-----------~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~-~ 477 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSS-----------NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NG-K 477 (571)
T ss_pred cCCCCcceeeeEEEEECCEEEEEcCcCCCc-----------cccceEEEEcCCCCceeecCCcccccccceEEEE-CC-E
Confidence 33221111222 334578999876531100 01357999999999887654321 223344443 33 3
Q ss_pred EEEE
Q 018705 204 VVVC 207 (351)
Q Consensus 204 lyv~ 207 (351)
||+.
T Consensus 478 iYvv 481 (571)
T KOG4441|consen 478 IYVV 481 (571)
T ss_pred EEEE
Confidence 7764
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=76.40 E-value=7.8 Score=22.74 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=23.9
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEE
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFI 79 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d 79 (351)
-....++++.|++..+.++..|+.|..||
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34567999998778888999999888875
No 312
>PHA02713 hypothetical protein; Provisional
Probab=76.27 E-value=70 Score=32.14 Aligned_cols=101 Identities=6% Similarity=0.094 Sum_probs=50.8
Q ss_pred EEEEEEcCCCeEEEEeecCC-ccccceEEcCCCCEEEEeCCC------------------------CeEEEcC-CC-eEE
Q 018705 74 WVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEK------------------------GLLKVTE-EG-VEA 126 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d~~G~L~v~d~~~------------------------gl~~~~~-~g-~~~ 126 (351)
.+.++|+.++++........ +-..+.+. -+|.||+..... .+.++++ +. .+.
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccccEEE-ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 36778887777765433221 11102222 368899864321 2556665 34 444
Q ss_pred ecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEee
Q 018705 127 IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLH 186 (351)
Q Consensus 127 l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~ 186 (351)
++.-. .....-++.-+|.||+...... . ......+.+|||.+ ++.+.+.
T Consensus 447 v~~m~~~r~~~~~~~~~~~IYv~GG~~~--~---------~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 447 LPNFWTGTIRPGVVSHKDDIYVVCDIKD--E---------KNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred cCCCCcccccCcEEEECCEEEEEeCCCC--C---------CccceeEEEecCCCCCCeeEcc
Confidence 33211 1222223445678998754210 0 00012478999998 6776554
No 313
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=75.80 E-value=31 Score=31.99 Aligned_cols=168 Identities=12% Similarity=0.126 Sum_probs=79.4
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVP 129 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~ 129 (351)
-++-.| ++.+..|..|+.|-.||.++-.- .......+... .+-+ +.++.|+.+....++++. +| ++++..
T Consensus 201 YClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL-CLqy--d~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 201 YCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL-CLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred EEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEE-eeec--cceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 344443 45566677777777777633221 11122234344 4444 456888877777778773 55 444433
Q ss_pred CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-E-EEeecCccccceEEEcCCCCEEEEE
Q 018705 130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-T-TVLHEGFYFANGIALSKNEDFVVVC 207 (351)
Q Consensus 130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~-~~~~~~~~~~ngi~~~~dg~~lyv~ 207 (351)
.-..+-.+.+. .++.+|.+..+ .-+||..+..+.. . +++.......|-+.++. ++++-+
T Consensus 276 HceaVLhlrf~--ng~mvtcSkDr---------------siaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsA 336 (499)
T KOG0281|consen 276 HCEAVLHLRFS--NGYMVTCSKDR---------------SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA 336 (499)
T ss_pred hcceeEEEEEe--CCEEEEecCCc---------------eeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEe
Confidence 21222233332 22555665311 1234444322211 1 11223344566666653 333333
Q ss_pred ecce--eEEeecCCCCceeEEeccCCCCCCceEECC-CCCEEEEEec
Q 018705 208 ESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIK 251 (351)
Q Consensus 208 ~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~ 251 (351)
+.++ +.|-.+ ++ + |+.-+.|.-.||+.-. .|++-|+...
T Consensus 337 SgDRTikvW~~s--t~--e-fvRtl~gHkRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 337 SGDRTIKVWSTS--TC--E-FVRTLNGHKRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred cCCceEEEEecc--ce--e-eehhhhcccccceehhccCeEEEecCC
Confidence 3333 566331 22 2 2223556667876543 4567776544
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=73.80 E-value=18 Score=35.71 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=50.1
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~ 120 (351)
.+.+.+.+|++..+.+|..||.|..+|...+ +.......-.|. -++..++|.+++.-+.+|-+.+.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCC-eeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEE
Confidence 5678889988899999999999999998544 444445555688 89999999877766665554444
No 315
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=73.28 E-value=8.5 Score=37.54 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CCeEEecC
Q 018705 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EGVEAIVP 129 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g~~~l~~ 129 (351)
.+..+++.+++..|-+-..||-+..+|..+.++.-. ..-.+-.+ .++..+||+++++.....|+.++. ++ ++++.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVAR 369 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVAR 369 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccEEEecCCcceEEEEEeccc-eEEEe
Confidence 677889998777788888899777777644433211 11123344 788899999998887788888883 33 33332
Q ss_pred C---CCCcccEEEcc
Q 018705 130 D---ASFTNDVIAAS 141 (351)
Q Consensus 130 ~---~~~~n~l~~d~ 141 (351)
+ ...++.+++||
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 2 27899999996
No 316
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=72.33 E-value=76 Score=28.75 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=16.8
Q ss_pred ccccceEEEcCCCCEEEEEecce
Q 018705 189 FYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 189 ~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
+..||-|+.+.|+.++-|+..+.
T Consensus 170 ~~~~n~ia~s~dng~vaVg~rGs 192 (339)
T COG4447 170 LAVPNEIARSADNGYVAVGARGS 192 (339)
T ss_pred hhhhhhhhhhccCCeEEEecCcc
Confidence 44688888888888777776554
No 317
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=71.95 E-value=1.1e+02 Score=30.22 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=38.8
Q ss_pred CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEec--CCC-CCcccEEEccCCcEE
Q 018705 72 DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIV--PDA-SFTNDVIAASDGTLY 146 (351)
Q Consensus 72 ~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~--~~~-~~~n~l~~d~dG~ly 146 (351)
....+.+|. +|.++.+..........+..-++|+|++... ..+..++..| ...+. ... .+--++...++|++.
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L 204 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLL 204 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EE
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEE
Confidence 556888887 7777544332222210256678999988775 6788888777 33322 211 335678899999765
Q ss_pred EEe
Q 018705 147 FTV 149 (351)
Q Consensus 147 ~t~ 149 (351)
+..
T Consensus 205 ~l~ 207 (477)
T PF05935_consen 205 ILA 207 (477)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 318
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=71.94 E-value=1.2e+02 Score=30.89 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=31.8
Q ss_pred ceEEEcCCCCEEEEEecce---eEEeecCCCCc--eeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 193 NGIALSKNEDFVVVCESWK---RYWLKGDRAGI--LDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 193 ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~--~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.|..++++++ .+++.... +.|-. ..... .+.++.+.-....++..|++|.++++...
T Consensus 320 ~g~lw~~n~~-~ii~~g~~Gg~hlWkt-~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 320 WGGLWSPNSN-VIIAHGRTGGFHLWKT-KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred eeEEEcCCCC-EEEEecccCcEEEEec-cCccceeeccccccccccceeeeecCCCCEEEEecc
Confidence 4567888887 55554433 66652 11111 22223222222345789999999998764
No 319
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.30 E-value=96 Score=29.50 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=50.0
Q ss_pred ceEEcCCCCEEE--EeC-CCC---eEEEc-CCCeEEecCCC--CCcccEEEccCCc-EEEEeCCCccCCccccccccccc
Q 018705 98 GLTTTKDGGVIL--CDN-EKG---LLKVT-EEGVEAIVPDA--SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGK 167 (351)
Q Consensus 98 gl~~d~~G~L~v--~d~-~~g---l~~~~-~~g~~~l~~~~--~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~ 167 (351)
++.++++|++++ .+. +.. ++.++ ++| +.+.+.. .....++..+||. +|.+......... ...
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~-------~~~ 199 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS-------DSG 199 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS--------CCG
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccccccceEEEeCCCCEEEEEEeCcccccc-------cCC
Confidence 456778887543 222 222 44444 355 1111111 1222388899874 5555432110000 000
Q ss_pred CCceEEEEeCCCCeE--EEeecCccc---cceEEEcCCCCEEEEEecce
Q 018705 168 PYGQLRKYDPKLKET--TVLHEGFYF---ANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 168 ~~g~l~~~d~~~~~~--~~~~~~~~~---~ngi~~~~dg~~lyv~~~~~ 211 (351)
....|+++...+... ..+...... --++..++|++++++....+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 123588887665432 234333222 33688899999888855433
No 320
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=70.06 E-value=11 Score=39.28 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=47.4
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~ 120 (351)
.|++.+ .+|.+-||+.+|.|..+|..+.+.++.....+.|+.||.+..||+-.+|+...=|+.++
T Consensus 581 s~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 581 SCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred eEEEec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 477887 78999999999999999863333333333336676599999999988888776566555
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=70.03 E-value=17 Score=21.21 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=18.3
Q ss_pred ecCCCCCcccEEEccCCcEEEEeCC
Q 018705 127 IVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
+......++++++.+++...++.+.
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~ 31 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSS 31 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEET
T ss_pred EcCCCCcEEEEEEecccccceeeCC
Confidence 3333367889999999888877764
No 322
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=69.84 E-value=30 Score=34.67 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=19.8
Q ss_pred CCceEEEeeCCCeEEE-EEcCCEEEEEEc
Q 018705 53 HPEDVSVVVSKGALYT-ATRDGWVKYFIL 80 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv-~~~~g~I~~~d~ 80 (351)
.-.++++.+.+..+|+ |..||.|+.||.
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 3446666665666665 678999999985
No 323
>PHA03098 kelch-like protein; Provisional
Probab=69.47 E-value=1.2e+02 Score=30.00 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=58.4
Q ss_pred CCeEEEEEc---C----CEEEEEEcCCCeEEEEeecC-CccccceEEcCCCCEEEEeCCC---------CeEEEcC-CC-
Q 018705 63 KGALYTATR---D----GWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEK---------GLLKVTE-EG- 123 (351)
Q Consensus 63 ~g~lyv~~~---~----g~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~L~v~d~~~---------gl~~~~~-~g- 123 (351)
++.+|+-.. + ..+.++|+.+++++...... .+-. .-+.--++.+|+..... .++++++ ++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 567776321 1 35889999888776543321 1111 11222467888865321 2677775 44
Q ss_pred eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705 124 VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (351)
Q Consensus 124 ~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 186 (351)
.+.+.... ...+.-+..-+|.||+...... . .....+++||+++++.+.+.
T Consensus 468 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~-----------~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 468 WTELSSLNFPRINASLCIFNNKIYVVGGDKY-E-----------YYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred eeeCCCCCcccccceEEEECCEEEEEcCCcC-C-----------cccceeEEEeCCCCEEEecC
Confidence 44443221 1111112223678888654210 0 01246999999988776654
No 324
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.73 E-value=87 Score=30.98 Aligned_cols=126 Identities=10% Similarity=0.178 Sum_probs=70.1
Q ss_pred CCeEEEE-EcCCEEEEEEcCCCeE-EEEeecCC------cccc-ceEEcCCCCEEEEeCCCCeEEEcC--CCeEEe--cC
Q 018705 63 KGALYTA-TRDGWVKYFILHNETL-VNWKHIDS------QSLL-GLTTTKDGGVILCDNEKGLLKVTE--EGVEAI--VP 129 (351)
Q Consensus 63 ~g~lyv~-~~~g~I~~~d~~~g~~-~~~~~~~~------~p~~-gl~~d~~G~L~v~d~~~gl~~~~~--~g~~~l--~~ 129 (351)
.+.+|++ ....+++++|-..|++ +.|..... .|.+ +--+++.+. +|+-...+++++++ .|...+ ..
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~T-lvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQT-LVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhccccccc-EEeecCCceEEecccccCcceeeeee
Confidence 3555653 2345699999888876 34432111 1110 111223333 45555678999995 552111 11
Q ss_pred -C-C---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc-ccceEEEcCCCCE
Q 018705 130 -D-A---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY-FANGIALSKNEDF 203 (351)
Q Consensus 130 -~-~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~ngi~~~~dg~~ 203 (351)
. . +..++++...+|.|-+..- .|.|-.||.-..+......++. ..-+|..+.||++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~------------------~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSL------------------KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKW 485 (644)
T ss_pred ccccccccccceeeecCCceEEEeec------------------CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcE
Confidence 1 1 5677888888887666542 4678888764333333344443 3467889999996
Q ss_pred EEEE
Q 018705 204 VVVC 207 (351)
Q Consensus 204 lyv~ 207 (351)
+..+
T Consensus 486 il~T 489 (644)
T KOG2395|consen 486 ILAT 489 (644)
T ss_pred EEEe
Confidence 5543
No 325
>PHA02790 Kelch-like protein; Provisional
Probab=68.16 E-value=1.3e+02 Score=29.63 Aligned_cols=166 Identities=6% Similarity=-0.028 Sum_probs=82.7
Q ss_pred CCeEEE-EEcC-----CEEEEEEcCCCeEEEEeecC-CccccceEEcCCCCEEEEeCC---CCeEEEcC-CC-eEEecCC
Q 018705 63 KGALYT-ATRD-----GWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNE---KGLLKVTE-EG-VEAIVPD 130 (351)
Q Consensus 63 ~g~lyv-~~~~-----g~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~L~v~d~~---~gl~~~~~-~g-~~~l~~~ 130 (351)
++.+|+ |..+ ..+.++|+.++++....... .+...+.+ .-+|.||+.... ..+.++++ ++ .+.++.-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 456665 3222 34789999888776654322 12221222 246889987543 23556664 44 4443322
Q ss_pred C-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc--ceEEEcCCCCEEEEE
Q 018705 131 A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA--NGIALSKNEDFVVVC 207 (351)
Q Consensus 131 ~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~--ngi~~~~dg~~lyv~ 207 (351)
. ......++.-+|.||+.-.... ....+.+|||++++.+.... +..| ...+..-++ .||+.
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~--------------~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~-~IYv~ 413 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSE--------------TDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGR-RLFLV 413 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCC--------------CCccEEEEeCCCCEEEeCCC-CCCccccceEEEECC-EEEEE
Confidence 1 1222234445789998754310 01357889999888766432 2212 112223345 48886
Q ss_pred ecce-eEEeecCCCCceeEEeccCCC--CCCceEECCCCCEEEEEe
Q 018705 208 ESWK-RYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 208 ~~~~-~~~i~~~~~~~~~~~~~~~~g--~pd~i~~d~~G~lwva~~ 250 (351)
.... +|.. ...+.+... .++. .-.+++. -+|.||+..+
T Consensus 414 GG~~e~ydp---~~~~W~~~~-~m~~~r~~~~~~v-~~~~IYviGG 454 (480)
T PHA02790 414 GRNAEFYCE---SSNTWTLID-DPIYPRDNPELII-VDNKLLLIGG 454 (480)
T ss_pred CCceEEecC---CCCcEeEcC-CCCCCccccEEEE-ECCEEEEECC
Confidence 4222 4442 233444333 2221 1123333 3578998765
No 326
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=66.52 E-value=90 Score=29.40 Aligned_cols=98 Identities=10% Similarity=0.147 Sum_probs=58.3
Q ss_pred CcCCCceEEEeeCCCeEE-EEEcCCEEEEEEcCCCeE--EE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEcC----
Q 018705 50 CVNHPEDVSVVVSKGALY-TATRDGWVKYFILHNETL--VN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---- 121 (351)
Q Consensus 50 ~~~~pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g~~--~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---- 121 (351)
.-..-|++.++|....++ ..+.||.|..||.+.+.- -. ....++..+ -|.++++-.|.+.....|.++++.
T Consensus 256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN-VISWnr~~~lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN-VISWNRREPLLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee-eEEccCCcceeeecCCCceEEEEEhhhc
Confidence 345678999998765554 566799999999766521 11 123344566 777776555666555667777762
Q ss_pred -CC--eEEecCCCCCcccEEEccCC-cEEEE
Q 018705 122 -EG--VEAIVPDASFTNDVIAASDG-TLYFT 148 (351)
Q Consensus 122 -~g--~~~l~~~~~~~n~l~~d~dG-~ly~t 148 (351)
.+ +..+.-...-+.+|...|.. .++.+
T Consensus 335 ~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 335 KSGQPVATFKYHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred cCCCcceeEEeccCCeeEEEeccccCceEEe
Confidence 12 23332222456777777743 34433
No 327
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=66.09 E-value=1.1e+02 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=26.6
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 186 (351)
..+|+|..+++|.+.++... ...|+++|+++|++....
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred cEeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEe
Confidence 45777777788877776533 346888888888776544
No 328
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=65.41 E-value=1.2e+02 Score=28.25 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=74.2
Q ss_pred CceEEEEeCCCCeEE-EeecCccccceEEEcC--CCCEEEEEecce--eEE-eecCCCCceeEEeccCCCCCCceEECC-
Q 018705 169 YGQLRKYDPKLKETT-VLHEGFYFANGIALSK--NEDFVVVCESWK--RYW-LKGDRAGILDAFIENLPGGPDNINLAP- 241 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~-~~~~~~~~~ngi~~~~--dg~~lyv~~~~~--~~~-i~~~~~~~~~~~~~~~~g~pd~i~~d~- 241 (351)
+|.+..||+.+++.- .+...-...||+.|.. ..+.++.+.+.+ |.| +..........+. +.++.|. +++|.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~f-~~ld~n 126 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTPF-ICLDLN 126 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCcc-eEeecc
Confidence 578999998876542 2222234568888866 344677788776 544 2211000011111 2222232 45554
Q ss_pred -CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECC-CCeEEEEEECCCCCcccceeEE
Q 018705 242 -DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGN-DGKIIRDFNDPDATYISFVTSA 319 (351)
Q Consensus 242 -~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~g~~~~~~~~~~g~~~~~~~~~ 319 (351)
.+++..+... .+ ...+.|+.+|-- ..+.++.|.+. +.+-+|.+
T Consensus 127 ck~~ii~~GtE----~~----------------------------~s~A~v~lwDvR~~qq~l~~~~eS---H~DDVT~l 171 (376)
T KOG1188|consen 127 CKKNIIACGTE----LT----------------------------RSDASVVLWDVRSEQQLLRQLNES---HNDDVTQL 171 (376)
T ss_pred CcCCeEEeccc----cc----------------------------cCceEEEEEEeccccchhhhhhhh---ccCcceeE
Confidence 4566554321 00 223457777652 23336666432 24568888
Q ss_pred EEEC--CEEEEEecCCCeEEEEeCCCC
Q 018705 320 AEFD--GNLYLASLQSNFIGILPLDGP 344 (351)
Q Consensus 320 ~~~~--g~L~ig~~~~~~i~~~~~~~~ 344 (351)
.++. -.|.++....+.+-.|++...
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCC
Confidence 8763 345555444788888887765
No 329
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=65.36 E-value=1.4e+02 Score=29.24 Aligned_cols=66 Identities=8% Similarity=0.069 Sum_probs=34.0
Q ss_pred CceEEEeeCCCeEEEEE-cCCEEEEEEcCCCe---EEEEeecCCccccceEEcCCCCEEEEeCC-CCeEEEcC
Q 018705 54 PEDVSVVVSKGALYTAT-RDGWVKYFILHNET---LVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVTE 121 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~ 121 (351)
-.++.|. ..+.|.++. ....++++..++|+ +.......+.-.+.++.... .+|++..+ .++++++.
T Consensus 37 ~~s~~w~-~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 37 DFSFNWQ-RRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEISGGQSGCVKIWD 107 (673)
T ss_pred ceeeecc-ccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeeccCcCceeeehh
Confidence 3467776 445466654 34467777666665 43333333321113333222 36666554 46777773
No 330
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=64.99 E-value=1e+02 Score=27.37 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=51.2
Q ss_pred CCceEEEeeCCCeEEEEE---cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc---CCC-eE
Q 018705 53 HPEDVSVVVSKGALYTAT---RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VE 125 (351)
Q Consensus 53 ~pe~i~~d~~~g~lyv~~---~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~~g-~~ 125 (351)
.++++++++++..+..-. ....++.... ++...... ...... ...+|++|.+|+++......++. .+| ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~-~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA-GGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC-CCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 577888886665554333 3345666554 44443332 222334 66789999999998765544433 234 22
Q ss_pred E--ecCC-CC-CcccEEEccCC
Q 018705 126 A--IVPD-AS-FTNDVIAASDG 143 (351)
Q Consensus 126 ~--l~~~-~~-~~n~l~~d~dG 143 (351)
. +... .. .+..+.+++||
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred eEEecccccCCceEEEEECCCC
Confidence 2 2111 12 68899999999
No 331
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=64.58 E-value=73 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=36.2
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-EeecCccccceEEEcCCCC
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNED 202 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~ngi~~~~dg~ 202 (351)
-..+++.+-+||.|..|..- ++|+..|+-.+.+.- ++...-...|.++|+||-.
T Consensus 252 pGv~gvrIRpD~KIlATAGW-----------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGW-----------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred CCccceEEccCCcEEeeccc-----------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 47889999999999887642 456666654444432 2223335678899999955
No 332
>smart00284 OLF Olfactomedin-like domains.
Probab=64.32 E-value=1.1e+02 Score=27.42 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=73.2
Q ss_pred cCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeec--------------CCccccceEEcCCCCEEEE---eC
Q 018705 51 VNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHI--------------DSQSLLGLTTTKDGGVILC---DN 112 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~--------------~~~p~~gl~~d~~G~L~v~---d~ 112 (351)
..|..-++.+ |.+|- --....|.|+|..++.+...... +..-. .+++|.+| |||. ..
T Consensus 74 ~~GtG~VVYn---gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~G-LWvIYat~~ 148 (255)
T smart00284 74 GQGTGVVVYN---GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENG-LWVIYATEQ 148 (255)
T ss_pred cccccEEEEC---ceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCc-eEEEEeccC
Confidence 4555556653 44543 33346799999988766422111 01113 67888777 6664 33
Q ss_pred CCCe---EEEcCCC---eEEecCCC---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCce-EEEEeCCCCeE
Q 018705 113 EKGL---LKVTEEG---VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ-LRKYDPKLKET 182 (351)
Q Consensus 113 ~~gl---~~~~~~g---~~~l~~~~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~~~~~ 182 (351)
..|. .+++++. .+.+.... ..-|. +---|.||++++.. ....+ -+.||..+++.
T Consensus 149 ~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~na--FmvCGvLY~~~s~~--------------~~~~~I~yayDt~t~~~ 212 (255)
T smart00284 149 NAGKIVISKLNPATLTIENTWITTYNKRSASNA--FMICGILYVTRSLG--------------SKGEKVFYAYDTNTGKE 212 (255)
T ss_pred CCCCEEEEeeCcccceEEEEEEcCCCccccccc--EEEeeEEEEEccCC--------------CCCcEEEEEEECCCCcc
Confidence 3343 3455533 33333322 12222 22348899998631 11234 47788877654
Q ss_pred EEeecC----ccccceEEEcCCCCEEEEEecce
Q 018705 183 TVLHEG----FYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 183 ~~~~~~----~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
..+.-. ...-..|...|-.+.||+=+.+.
T Consensus 213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng~ 245 (255)
T smart00284 213 GHLDIPFENMYEYISMLDYNPNDRKLYAWNNGH 245 (255)
T ss_pred ceeeeeeccccccceeceeCCCCCeEEEEeCCe
Confidence 332211 22233477778777788876555
No 333
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=64.18 E-value=1.4e+02 Score=28.77 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=39.9
Q ss_pred eEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCC-CeEEEEeCCCC
Q 018705 289 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQS-NFIGILPLDGP 344 (351)
Q Consensus 289 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~-~~i~~~~~~~~ 344 (351)
..++.+|. ++++...+++-. +...+.++-..++.+|+-++.. +-+.++|+.+.
T Consensus 406 N~vYilDe-~lnvvGkltGl~--~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNP 459 (603)
T COG4880 406 NAVYILDE-NLNVVGKLTGLA--PGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNP 459 (603)
T ss_pred ceeEEEcC-CCcEEEEEeccC--CCceEEEEEEeCceEEEEEEeccCceEEEEcCCC
Confidence 45788888 888888887521 1235788888899999999876 66788888776
No 334
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=63.36 E-value=1.5e+02 Score=29.93 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=52.2
Q ss_pred EEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCC-------CeEEEcC-CC-eEEecCCC--CCcccEEEccC
Q 018705 75 VKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEK-------GLLKVTE-EG-VEAIVPDA--SFTNDVIAASD 142 (351)
Q Consensus 75 I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~-------gl~~~~~-~g-~~~l~~~~--~~~n~l~~d~d 142 (351)
+-++|+.+.++.........-. +...- -+|.||+..... .+.++++ ++ .+.++.-. ..-.+ +..-+
T Consensus 398 vE~YDp~~~~W~~va~m~~~r~-~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~ 475 (571)
T KOG4441|consen 398 VECYDPVTNKWTPVAPMLTRRS-GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLN 475 (571)
T ss_pred EEEecCCCCcccccCCCCccee-eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEEC
Confidence 5677776666655432222112 32222 478899876432 3556665 44 55443321 11122 33346
Q ss_pred CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (351)
Q Consensus 143 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 186 (351)
|.||+.-.... ......+-+|||.+.+.+.+.
T Consensus 476 ~~iYvvGG~~~------------~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 476 GKIYVVGGFDG------------TSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CEEEEECCccC------------CCccceEEEEcCCCCceeEcc
Confidence 78887654310 001224899999998887764
No 335
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=63.29 E-value=1e+02 Score=26.89 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=12.1
Q ss_pred ccceEEEcCCCCEEEEEec
Q 018705 191 FANGIALSKNEDFVVVCES 209 (351)
Q Consensus 191 ~~ngi~~~~dg~~lyv~~~ 209 (351)
...+.+++|+|. |..+.+
T Consensus 91 siyc~~ws~~ge-liatgs 108 (350)
T KOG0641|consen 91 SIYCTAWSPCGE-LIATGS 108 (350)
T ss_pred cEEEEEecCccC-eEEecC
Confidence 456788999998 544433
No 336
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=62.44 E-value=1.3e+02 Score=27.64 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=47.1
Q ss_pred CCCCEEEEeCCCCeEEEc---CCCeEEecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705 103 KDGGVILCDNEKGLLKVT---EEGVEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP 177 (351)
Q Consensus 103 ~~G~L~v~d~~~gl~~~~---~~g~~~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 177 (351)
++...|++++..|+..++ ++..+.+.. ......++.++.+ ..|+++.. .++..+|.
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn-~aYVadld------------------dgfLivdv 155 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN-YAYVADLD------------------DGFLIVDV 155 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC-EEEEeecc------------------CcEEEEEC
Confidence 345689999999998888 333222111 0023344444322 47777743 35666664
Q ss_pred CCCeEEEeecCccccce----EEEcCCCCEEEEEecce
Q 018705 178 KLKETTVLHEGFYFANG----IALSKNEDFVVVCESWK 211 (351)
Q Consensus 178 ~~~~~~~~~~~~~~~ng----i~~~~dg~~lyv~~~~~ 211 (351)
.+-+--.+......|.| +++| |++-|++..++
T Consensus 156 sdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~ 191 (370)
T COG5276 156 SDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDG 191 (370)
T ss_pred CCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCC
Confidence 43222233333334433 5665 55788887666
No 337
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=62.29 E-value=70 Score=28.18 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=45.0
Q ss_pred CccccceEEc-CCCCEEEEeCCCCeEEEcC-CC-eEEec-CCC-----CCcccEEEccC-CcEEEEeCCCccCCcccccc
Q 018705 93 SQSLLGLTTT-KDGGVILCDNEKGLLKVTE-EG-VEAIV-PDA-----SFTNDVIAASD-GTLYFTVASTKYTPTDFYKD 162 (351)
Q Consensus 93 ~~p~~gl~~d-~~G~L~v~d~~~gl~~~~~-~g-~~~l~-~~~-----~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~ 162 (351)
.+.. ||.+- .+|+||-.....++|.+++ +| .+.+. ... ....++.+.|- .+|-+-..
T Consensus 27 e~l~-GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~------------ 93 (236)
T PF14339_consen 27 ESLV-GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN------------ 93 (236)
T ss_pred CeEE-EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc------------
Confidence 3455 88877 4789998877889999996 77 55542 111 23444445552 34544322
Q ss_pred cccccCCceEEEEeCCCCeEE
Q 018705 163 MAEGKPYGQLRKYDPKLKETT 183 (351)
Q Consensus 163 ~~~~~~~g~l~~~d~~~~~~~ 183 (351)
.|.=+|++|++|.+.
T Consensus 94 ------~GqNlR~npdtGav~ 108 (236)
T PF14339_consen 94 ------TGQNLRLNPDTGAVT 108 (236)
T ss_pred ------CCcEEEECCCCCCce
Confidence 356788888888744
No 338
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=61.69 E-value=1.2e+02 Score=27.03 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=76.5
Q ss_pred cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec--------------CCccccceEEcCCCCEEEE---eCC
Q 018705 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--------------DSQSLLGLTTTKDGGVILC---DNE 113 (351)
Q Consensus 51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~--------------~~~p~~gl~~d~~G~L~v~---d~~ 113 (351)
..|...++.+ +-.+|--.....|.|+|..++++...... +..-. .+++|..| |||. ...
T Consensus 69 ~~GtG~vVYn--gslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE~G-LWvIYat~~~ 144 (250)
T PF02191_consen 69 WQGTGHVVYN--GSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDENG-LWVIYATEDN 144 (250)
T ss_pred eccCCeEEEC--CcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcCCC-EEEEEecCCC
Confidence 4566666653 44455544567899999988766522111 01113 67788666 6664 333
Q ss_pred CC---eEEEcCCC---eEEecCCC---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCce-EEEEeCCCCeEE
Q 018705 114 KG---LLKVTEEG---VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ-LRKYDPKLKETT 183 (351)
Q Consensus 114 ~g---l~~~~~~g---~~~l~~~~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~~~~~~ 183 (351)
.| +.+++++. .+.+.... ..-| ++---|.||++++... ...+ -+.||..+++.+
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~~~k~~~~n--aFmvCGvLY~~~s~~~--------------~~~~I~yafDt~t~~~~ 208 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTSYPKRSAGN--AFMVCGVLYATDSYDT--------------RDTEIFYAFDTYTGKEE 208 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEeccCchhhcc--eeeEeeEEEEEEECCC--------------CCcEEEEEEECCCCcee
Confidence 34 34444432 33333222 1122 3334588999887521 1133 467887776554
Q ss_pred Eee----cCccccceEEEcCCCCEEEEEecce
Q 018705 184 VLH----EGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 184 ~~~----~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
.+. ........|..+|-.+.||+=+.+.
T Consensus 209 ~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 209 DVSIPFPNPYGNISMLSYNPRDKKLYAWDNGY 240 (250)
T ss_pred ceeeeeccccCceEeeeECCCCCeEEEEECCe
Confidence 332 1222344577788777788877665
No 339
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.39 E-value=45 Score=34.19 Aligned_cols=133 Identities=12% Similarity=0.184 Sum_probs=71.9
Q ss_pred CeEEEEEcCCEEEEEEcCC---CeE-EEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEc--C-CC-eEEecCCCCCc
Q 018705 64 GALYTATRDGWVKYFILHN---ETL-VNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--E-EG-VEAIVPDASFT 134 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~---g~~-~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~-~g-~~~l~~~~~~~ 134 (351)
+.+.+...+|.|..||... .+. ..|....-..+ .+.|.+ +-++.+..+..|.++.. + +. ..++...-..+
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhcccee-eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhh
Confidence 4455666788899998733 111 12222222234 566654 33677777777877776 2 22 44333333678
Q ss_pred ccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEE-EeecCccccceEEEcCCCCEEEEEecce
Q 018705 135 NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETT-VLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 135 n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~-~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
.|+.+.|. ++.|++... .|.|..||...- +.. .+...-...-.+.++|++ -|++..++
T Consensus 180 RDV~fsp~~~~~F~s~~d-----------------sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr--~~lATGGR 240 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHD-----------------SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR--EWLATGGR 240 (839)
T ss_pred hceeeccCCCceEEEecC-----------------CceEEEeeccCchhHHHHhhcccCceEEEeecCCC--ceeeecCC
Confidence 89999985 555555432 467888886421 111 011111223456678865 56665555
Q ss_pred ----eEEee
Q 018705 212 ----RYWLK 216 (351)
Q Consensus 212 ----~~~i~ 216 (351)
++|--
T Consensus 241 DK~vkiWd~ 249 (839)
T KOG0269|consen 241 DKMVKIWDM 249 (839)
T ss_pred CccEEEEec
Confidence 67743
No 340
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=58.59 E-value=70 Score=31.71 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=54.6
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC--CccccceEEcC--CCCEEEEeCCCCeEEEcC-C------
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLTTTK--DGGVILCDNEKGLLKVTE-E------ 122 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~--~~p~~gl~~d~--~G~L~v~d~~~gl~~~~~-~------ 122 (351)
-.++.|..++..|..|+.|-++..||+-..|..+....+ .+.. ...|-| +.++.++..+...+++.. +
T Consensus 53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF-svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIF-SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred ecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccccee-EEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence 458899955556667888889999998655554443332 2333 445543 456777666655555531 1
Q ss_pred ---C-eEEec---CCCCCcccEEEccCC-cEEEEeC
Q 018705 123 ---G-VEAIV---PDASFTNDVIAASDG-TLYFTVA 150 (351)
Q Consensus 123 ---g-~~~l~---~~~~~~n~l~~d~dG-~ly~t~~ 150 (351)
| .++.. -....+--|+..|+| +.+++.+
T Consensus 132 ~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS 167 (758)
T ss_pred cccCccchhhhhhhhhhhhhheecCCCCCceEEEec
Confidence 1 11111 011566678888887 5444443
No 341
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=57.24 E-value=1.7e+02 Score=27.52 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCeEEEEE--cCCEEEEEEcCC--CeEEEEeecCCccccce-EEcCCCCEEEEeCC------------CCeEEEcC-CC-
Q 018705 63 KGALYTAT--RDGWVKYFILHN--ETLVNWKHIDSQSLLGL-TTTKDGGVILCDNE------------KGLLKVTE-EG- 123 (351)
Q Consensus 63 ~g~lyv~~--~~g~I~~~d~~~--g~~~~~~~~~~~p~~gl-~~d~~G~L~v~d~~------------~gl~~~~~-~g- 123 (351)
++.+|+.. ....++++|.+. +++.........|..+. +..-++.|||.-.. ..++++++ ..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 56788732 235678888743 44554433221121022 22246789886432 23667775 44
Q ss_pred eEEecCCC--CCcccEEEc-cCCcEEEEeC
Q 018705 124 VEAIVPDA--SFTNDVIAA-SDGTLYFTVA 150 (351)
Q Consensus 124 ~~~l~~~~--~~~n~l~~d-~dG~ly~t~~ 150 (351)
.+.+.... ......++. .++.||+--.
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECC
Confidence 44444321 111112232 5788998754
No 342
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=56.86 E-value=1.3e+02 Score=28.45 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=44.0
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-Eeec--CCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHI--DSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~--~~~p~~gl~~d~~G~L~v~d~~~gl~~~~ 120 (351)
=+++++..+..+|.|..++.|.+-|..+.+... +... .+..+ ++...+-.++++.....+++.+.
T Consensus 109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY-~m~~~P~DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY-HMDQHPTDNTLIVVTRAKLVSFI 176 (609)
T ss_pred EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee-ecccCCCCceEEEEecCceEEEE
Confidence 388999545567889899998888876554432 2222 24577 88888877777766666666665
No 343
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=56.44 E-value=78 Score=35.69 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=29.2
Q ss_pred cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705 71 RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 71 ~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~ 120 (351)
+++++|+||+..++|+........++.-|....||.||. -.+..++-+.
T Consensus 380 Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~l~nLS 428 (1774)
T PF11725_consen 380 HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDTLVNLS 428 (1774)
T ss_pred ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCceeecC
Confidence 567788888866666543233344543566777888887 3334444443
No 344
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=56.03 E-value=1e+02 Score=29.03 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCCceEEEeeCCCeEEEEEcCCEEEEEEcCC---CeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHN---ETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~---g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~ 120 (351)
..|+.+.+...+-..-++...|.++.+|.-. +..+.....-.... .+++.+|++..++....+.+|+.
T Consensus 108 ~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~-dVavS~D~~~IitaDRDEkIRvs 178 (390)
T KOG3914|consen 108 KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL-DVAVSPDDQFIITADRDEKIRVS 178 (390)
T ss_pred cCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh-eeeecCCCCEEEEecCCceEEEE
Confidence 3466676665555555555556566665322 22222222223455 78888888665544444555544
No 345
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=55.00 E-value=1.2e+02 Score=28.23 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=39.0
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW 210 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~ 210 (351)
.....+..+|||+-.+..+. | +-++-.|...|.....+...-....|++|++||++.-+.+..
T Consensus 92 agls~~~WSPdgrhiL~tse--F--------------~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSE--F--------------DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CcceeeeECCCcceEeeeec--c--------------eeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecc
Confidence 45667789999964444443 2 225666655555444444333455899999999966666543
No 346
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=54.87 E-value=36 Score=32.84 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=29.3
Q ss_pred cceEEEcCCCCEEEEEecce----eEEeecCCCCc--eeEEec--------------cCCCCCCceEECCCC-CEEEEEe
Q 018705 192 ANGIALSKNEDFVVVCESWK----RYWLKGDRAGI--LDAFIE--------------NLPGGPDNINLAPDG-SFWIGLI 250 (351)
Q Consensus 192 ~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~--~~~~~~--------------~~~g~pd~i~~d~~G-~lwva~~ 250 (351)
+.-|.+|.|.++|||+.... +|.|+++..-+ .+++.. .+.|.|.=+..+.|| +||+++.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 34588999999999999765 68888642111 122211 123446667889999 5999964
No 347
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=53.30 E-value=2.4e+02 Score=28.00 Aligned_cols=137 Identities=12% Similarity=0.230 Sum_probs=71.2
Q ss_pred CCceEEEe-eCCCeEEE-EEcCCEEEEEEcCCCeE-EEEeecCC-----ccccceEEcCCCCEEEEeCCCCeEEEcC--C
Q 018705 53 HPEDVSVV-VSKGALYT-ATRDGWVKYFILHNETL-VNWKHIDS-----QSLLGLTTTKDGGVILCDNEKGLLKVTE--E 122 (351)
Q Consensus 53 ~pe~i~~d-~~~g~lyv-~~~~g~I~~~d~~~g~~-~~~~~~~~-----~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~ 122 (351)
.|+-+..- .+...+|. +.....++++|-..|++ ..|..... .|.+...--.+-.-.|+-+..++++++| .
T Consensus 468 dp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~ 547 (776)
T COG5167 468 DPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR 547 (776)
T ss_pred ChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEeccccc
Confidence 34444332 23345565 33456799999877876 34421111 2220111001223345666778999995 5
Q ss_pred C--eEEecCCC----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc-cccceE
Q 018705 123 G--VEAIVPDA----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGI 195 (351)
Q Consensus 123 g--~~~l~~~~----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~ngi 195 (351)
| +....... +..++.....+|.|-++.. .|.|-.||.-+.+......++ ...-+|
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~------------------kGDirLyDRig~rAKtalP~lG~aIk~i 609 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMTTESGYIAAASR------------------KGDIRLYDRIGKRAKTALPGLGDAIKHI 609 (776)
T ss_pred CCceeeeeehhccccccccccccccCceEEEecC------------------CCceeeehhhcchhhhcCcccccceeee
Confidence 5 22221111 5556666666775544332 356777775443433333333 345678
Q ss_pred EEcCCCCEEEEE
Q 018705 196 ALSKNEDFVVVC 207 (351)
Q Consensus 196 ~~~~dg~~lyv~ 207 (351)
.++.+|+++..+
T Consensus 610 dvta~Gk~ilaT 621 (776)
T COG5167 610 DVTANGKHILAT 621 (776)
T ss_pred EeecCCcEEEEe
Confidence 899999865554
No 348
>KOG4328 consensus WD40 protein [Function unknown]
Probab=52.41 E-value=2.3e+02 Score=27.48 Aligned_cols=168 Identities=11% Similarity=0.057 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCEEEEEEcCCCeE--EEEeecCCccccceEEcCCCCEEE-EeCCCCeEEEcC----CC-eE-EecCC--
Q 018705 62 SKGALYTATRDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKDGGVIL-CDNEKGLLKVTE----EG-VE-AIVPD-- 130 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g~~--~~~~~~~~~p~~gl~~d~~G~L~v-~d~~~gl~~~~~----~g-~~-~l~~~-- 130 (351)
+++.++++..-|..-.||..++.. ..+.-...... ++++.|-..-++ +.+..+..+++. .+ .+ .+.+-
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~-sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H 368 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT-SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH 368 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccc-eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc
Confidence 455666666666666777655433 22222223556 788887664333 333345665652 22 22 12211
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC--------CCeEEEeecC----ccccceEEEc
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--------LKETTVLHEG----FYFANGIALS 198 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--------~~~~~~~~~~----~~~~ngi~~~ 198 (351)
...+++..++|.|.-.+|+.. +..|..||.+ .+.+ .... .-.|--.+++
T Consensus 369 rrsV~sAyFSPs~gtl~TT~~-----------------D~~IRv~dss~~sa~~~p~~~I--~Hn~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGGTLLTTCQ-----------------DNEIRVFDSSCISAKDEPLGTI--PHNNRTGRWLTPFKAAWD 429 (498)
T ss_pred cceeeeeEEcCCCCceEeecc-----------------CCceEEeecccccccCCcccee--eccCcccccccchhheeC
Confidence 167889999997633455433 1234444431 1111 0000 0112234688
Q ss_pred CCCCEEEEEecceeEEeecCCCCc--eeEEeccCCCCCCceEECCCCCEEEEE
Q 018705 199 KNEDFVVVCESWKRYWLKGDRAGI--LDAFIENLPGGPDNINLAPDGSFWIGL 249 (351)
Q Consensus 199 ~dg~~lyv~~~~~~~~i~~~~~~~--~~~~~~~~~g~pd~i~~d~~G~lwva~ 249 (351)
|+.+.++++..-.++.+-+.+.++ .++.-....+.|.=+.+-+-+..|++.
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence 888877777655567766554444 121111122233334555666556654
No 349
>PHA03098 kelch-like protein; Provisional
Probab=51.82 E-value=2.5e+02 Score=27.78 Aligned_cols=101 Identities=8% Similarity=-0.003 Sum_probs=52.9
Q ss_pred EEEEEEcCCCeEEEEeecC-CccccceEEcCCCCEEEEeCCC------CeEEEcC-CC-eEEecCCC-CCcccEEEccCC
Q 018705 74 WVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEK------GLLKVTE-EG-VEAIVPDA-SFTNDVIAASDG 143 (351)
Q Consensus 74 ~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~L~v~d~~~------gl~~~~~-~g-~~~l~~~~-~~~n~l~~d~dG 143 (351)
.++++|+.++++....... .+-..+++. -+|.||+..+.. .+.++++ ++ .+...... ..-...+..-+|
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNN 390 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECC
Confidence 5889999888876553322 111102222 367888865432 3555664 33 44332211 111222333467
Q ss_pred cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705 144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (351)
Q Consensus 144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 186 (351)
.||+....... +.....+++||+.+++.+.+.
T Consensus 391 ~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 391 LIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEECCcCCC-----------CcccceEEEEeCCCCeeeecC
Confidence 89986542110 011346999999988776543
No 350
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=50.61 E-value=1.2e+02 Score=31.00 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=66.8
Q ss_pred ecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCC--CeEEEE---eecCCcc---ccceEEcCCCCEEEEeCCCCeE
Q 018705 46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHN--ETLVNW---KHIDSQS---LLGLTTTKDGGVILCDNEKGLL 117 (351)
Q Consensus 46 i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~--g~~~~~---~~~~~~p---~~gl~~d~~G~L~v~d~~~gl~ 117 (351)
+..|.-..-.++.|.|.+-.|..++.|..++.|.+.+ |-+... ...++.. + |-.+.++++.+++....|-+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCEEEEecccCcE
Confidence 3334444455778886555788888899888887743 333322 2222222 3 55677889999998888777
Q ss_pred EEcC--CC--eEE--ecC-CCCCcccEEEccCCcEEEEeC
Q 018705 118 KVTE--EG--VEA--IVP-DASFTNDVIAASDGTLYFTVA 150 (351)
Q Consensus 118 ~~~~--~g--~~~--l~~-~~~~~n~l~~d~dG~ly~t~~ 150 (351)
+.++ +. ... ... ....+.||+.+|.|.++++.+
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs 380 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS 380 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEec
Confidence 7775 32 222 111 236789999999999988875
No 351
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=49.57 E-value=1.6e+02 Score=29.20 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=35.0
Q ss_pred CCccccccCCCCC---CCcCc--cCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE
Q 018705 23 SVSSLASLLSISK---ESSSM--KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL 85 (351)
Q Consensus 23 ~~~~~~~~~~~p~---~~~~l--~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~ 85 (351)
.||.-..-|++|+ +.+.- +.+.-...|....-..+++.....+|..-+.||.++.|++.....
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 3555545677774 11111 112222234444455778875556677777889888888744433
No 352
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=49.43 E-value=2.8e+02 Score=27.60 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCccccccCCCCC-CCcCccCceEecC-CCcCCC-ceEEEeeCCCeEEEEEcCCEEEEEE------cCCCe-E----EEE
Q 018705 23 SVSSLASLLSISK-ESSSMKGLTKLGE-GCVNHP-EDVSVVVSKGALYTATRDGWVKYFI------LHNET-L----VNW 88 (351)
Q Consensus 23 ~~~~~~~~~~~p~-~~~~l~~~~~i~~-~~~~~p-e~i~~d~~~g~lyv~~~~g~I~~~d------~~~g~-~----~~~ 88 (351)
.+|-.-.+|++.. .+.....++.+-+ ....+| -|+++.+.+..+|.+..||.|..|+ +.+.- . ..+
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l 392 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL 392 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence 3444433576622 2222233333322 223455 2566665677899999999999993 32211 1 111
Q ss_pred eecCCccccceEEcC-CCCEEEEeCCCCeEEEc
Q 018705 89 KHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT 120 (351)
Q Consensus 89 ~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~ 120 (351)
.....-.. ++++.+ ..+|..|+.. |.++.+
T Consensus 393 ~Ghtdavw-~l~~s~~~~~Llscs~D-gTvr~w 423 (577)
T KOG0642|consen 393 LGHTDAVW-LLALSSTKDRLLSCSSD-GTVRLW 423 (577)
T ss_pred ecccccee-eeeecccccceeeecCC-ceEEee
Confidence 22222334 666664 3366666543 455555
No 353
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=49.19 E-value=2.2e+02 Score=26.30 Aligned_cols=63 Identities=25% Similarity=0.183 Sum_probs=42.3
Q ss_pred CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEE-EEeCCCCeEE-EeecCc--cccceEEEcCCCCEEEEE
Q 018705 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETT-VLHEGF--YFANGIALSKNEDFVVVC 207 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~-~~d~~~~~~~-~~~~~~--~~~ngi~~~~dg~~lyv~ 207 (351)
..+..+++.-+|++..|.+. .|.|. .||..+|+.. .+-.+. .....|+||||..+|-++
T Consensus 182 s~Iacv~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred CceeEEEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence 66777888889988887765 46654 5687766543 333333 245689999999876666
Q ss_pred ecce
Q 018705 208 ESWK 211 (351)
Q Consensus 208 ~~~~ 211 (351)
+..+
T Consensus 245 SdKg 248 (346)
T KOG2111|consen 245 SDKG 248 (346)
T ss_pred cCCC
Confidence 5444
No 354
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=48.20 E-value=55 Score=31.06 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=17.0
Q ss_pred ccceEEEcCCCCEEEEEecc
Q 018705 191 FANGIALSKNEDFVVVCESW 210 (351)
Q Consensus 191 ~~ngi~~~~dg~~lyv~~~~ 210 (351)
.|.-+.+|-||++|||+.+-
T Consensus 390 GPQMlQLSLDGKRLYVt~SL 409 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNSL 409 (476)
T ss_pred CceeEEeccCCcEEEEEchh
Confidence 57789999999999998753
No 355
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=48.06 E-value=38 Score=19.96 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=10.6
Q ss_pred eEEEcCCCCEEEEEe
Q 018705 194 GIALSKNEDFVVVCE 208 (351)
Q Consensus 194 gi~~~~dg~~lyv~~ 208 (351)
..++||||+.|+++.
T Consensus 13 ~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTS 27 (39)
T ss_dssp EEEE-TTSSEEEEEE
T ss_pred CEEEecCCCEEEEEe
Confidence 457899999777754
No 356
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.05 E-value=24 Score=37.45 Aligned_cols=109 Identities=7% Similarity=0.123 Sum_probs=61.2
Q ss_pred eEEEeeCCCeEEE-EEcCCEEEEEEcCCCe-EEEEeecCC--ccccceEEcCCC--CEEEEeCCCC--eEEEcC----CC
Q 018705 56 DVSVVVSKGALYT-ATRDGWVKYFILHNET-LVNWKHIDS--QSLLGLTTTKDG--GVILCDNEKG--LLKVTE----EG 123 (351)
Q Consensus 56 ~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~-~~~~~~~~~--~p~~gl~~d~~G--~L~v~d~~~g--l~~~~~----~g 123 (351)
+++|+++-..++. +..+|++..||.+..+ +..+....+ +.. +++.++++ +|+++...++ ++.++. +-
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S-~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS-VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee-eeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 5566644444444 5567889999985442 223333222 245 78888887 6888765543 333331 22
Q ss_pred -eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE
Q 018705 124 -VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET 182 (351)
Q Consensus 124 -~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 182 (351)
.+++......+-++...+.+ ++.++.. ++++++.||++|+++
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsg-----------------kD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSG-----------------KDNRIICWNPNTGEV 288 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhccc-----------------CCCCeeEecCCCceE
Confidence 34442222344444444433 4444443 367899999988765
No 357
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=47.69 E-value=2e+02 Score=25.45 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=76.6
Q ss_pred CCEEEEEEcCCCeEEEEeecC----CccccceEEcCCCCEEEE-e---CCCCeEEEcCCC-eEEecCCCCCcccEEEccC
Q 018705 72 DGWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILC-D---NEKGLLKVTEEG-VEAIVPDASFTNDVIAASD 142 (351)
Q Consensus 72 ~g~I~~~d~~~g~~~~~~~~~----~~p~~gl~~d~~G~L~v~-d---~~~gl~~~~~~g-~~~l~~~~~~~n~l~~d~d 142 (351)
||++.+.+. +..+...... ..+. ..++.++|..+.+ . ....++....++ ...+... .....-.+|++
T Consensus 1 dG~l~~~~~--~~~~pv~g~~~~~~~~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g-~~l~~PS~d~~ 76 (253)
T PF10647_consen 1 DGQLVRVSG--GGVTPVPGALGEGGYDVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG-GSLTRPSWDPD 76 (253)
T ss_pred CCcEEEecC--CceeECCCCcCcCCcccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC-CccccccccCC
Confidence 466667553 3333332111 1455 7888888864433 2 233444444444 4333222 23333478899
Q ss_pred CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee---cCcc-ccceEEEcCCCCEEEE-Eecce--eEEe
Q 018705 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFY-FANGIALSKNEDFVVV-CESWK--RYWL 215 (351)
Q Consensus 143 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~~~-~~ngi~~~~dg~~lyv-~~~~~--~~~i 215 (351)
|.+|+.+.... ..++.+ +..+++..... .... ....+.+||||.++-+ .+... ++++
T Consensus 77 g~~W~v~~~~~---------------~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 77 GWVWTVDDGSG---------------GVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred CCEEEEEcCCC---------------ceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence 99998876411 112333 22223322211 1122 4567889999995444 43322 5555
Q ss_pred ec---CCCCceeEEec------cCCCCCCceEECCCCCEEEEEec
Q 018705 216 KG---DRAGILDAFIE------NLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 216 ~~---~~~~~~~~~~~------~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.. ...+....+.. ....-...+....++.|.|....
T Consensus 141 a~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 141 AGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred EEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 31 11221111111 11112345677788888887654
No 358
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.13 E-value=1.1e+02 Score=31.38 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=66.7
Q ss_pred CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcC-CCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--
Q 018705 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-- 123 (351)
Q Consensus 49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-- 123 (351)
|....+-++.|.|-+...--+..+..+-.||.+ .|-...+.....-.. -+++.++|+..+.......++++. .|
T Consensus 110 gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~-~l~lsP~Gr~v~~g~ed~tvki~d~~agk~ 188 (825)
T KOG0267|consen 110 GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD-VLRLSPDGRWVASGGEDNTVKIWDLTAGKL 188 (825)
T ss_pred ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE-EEeecCCCceeeccCCcceeeeeccccccc
Confidence 334456677777533322124445555566643 333333332212233 678888887554433346777763 44
Q ss_pred eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC---ccccceEEEcCC
Q 018705 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---FYFANGIALSKN 200 (351)
Q Consensus 124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~ngi~~~~d 200 (351)
...|.........+.++|...+.-+.+. ++.+-.||.++ ++++... ...+.+.+|+++
T Consensus 189 ~~ef~~~e~~v~sle~hp~e~Lla~Gs~-----------------d~tv~f~dlet--fe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 189 SKEFKSHEGKVQSLEFHPLEVLLAPGSS-----------------DRTVRFWDLET--FEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred ccccccccccccccccCchhhhhccCCC-----------------Cceeeeeccce--eEEeeccCCccCCceeeeecCC
Confidence 4444433233333444443322222221 33455566542 3333222 223456778888
Q ss_pred CCEEEEEe
Q 018705 201 EDFVVVCE 208 (351)
Q Consensus 201 g~~lyv~~ 208 (351)
+..++.++
T Consensus 250 ~~~~~~G~ 257 (825)
T KOG0267|consen 250 GKIVLSGE 257 (825)
T ss_pred ceeeecCc
Confidence 87555444
No 359
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=45.57 E-value=2.9e+02 Score=26.66 Aligned_cols=48 Identities=6% Similarity=0.022 Sum_probs=28.7
Q ss_pred CCeEEEEEc---CCEEEEEEcCCCeEEEEeecCCcc----ccceEEcCCCCEEEEe
Q 018705 63 KGALYTATR---DGWVKYFILHNETLVNWKHIDSQS----LLGLTTTKDGGVILCD 111 (351)
Q Consensus 63 ~g~lyv~~~---~g~I~~~d~~~g~~~~~~~~~~~p----~~gl~~d~~G~L~v~d 111 (351)
+|-+|-+.. -+-+|+++..+.+++.+..+...| + .++.-+.|.||+-.
T Consensus 85 GGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRssh-q~va~~s~~l~~fG 139 (521)
T KOG1230|consen 85 GGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSH-QAVAVPSNILWLFG 139 (521)
T ss_pred cceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccc-eeEEeccCeEEEec
Confidence 455554321 245899998777887765443321 3 34445777888753
No 360
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=44.51 E-value=1.5e+02 Score=22.95 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=49.1
Q ss_pred CcccEEEccCCcEEEEeCCCccCCcccccccccccCCc-eEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG-QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
.|.-+-.+++|..+.+... ...| .++.||+.-+++.. =+...|- - +++..+...
T Consensus 5 sPSYvy~~sng~~~ass~g---------------~~~g~nvFyYDsti~RI~T--Cc~vrP~-------Y-~v~~~D~~~ 59 (123)
T PF11763_consen 5 SPSYVYLNSNGYMIASSNG---------------DPEGENVFYYDSTIKRIVT--CCCVRPI-------Y-RVYHDDPNK 59 (123)
T ss_pred ccceEEEcCCCcEEeeccC---------------CcCceeeEEecCCcceEEE--ecccccE-------E-EEeecCCCc
Confidence 4666777788877765543 1122 58999976443321 1111221 0 133333222
Q ss_pred -eEEeecCCCCcee-EEeccCCCCCCceEECCCCCEEEEEe
Q 018705 212 -RYWLKGDRAGILD-AFIENLPGGPDNINLAPDGSFWIGLI 250 (351)
Q Consensus 212 -~~~i~~~~~~~~~-~~~~~~~g~pd~i~~d~~G~lwva~~ 250 (351)
.+.|.....|+.+ .+.++..+.|-.+.++.+|++|++..
T Consensus 60 ~sf~I~kn~dG~~~Ft~~e~~~~ep~~l~~l~dgri~~ts~ 100 (123)
T PF11763_consen 60 SSFNIIKNNDGTYQFTFVESSFSEPLDLHTLSDGRIWFTSN 100 (123)
T ss_pred ceEEEEecCCCcEEEEEcccCCCCcEEEEEecCCcEEEEcc
Confidence 4444433345422 23333344677788999999999974
No 361
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=44.40 E-value=3.3e+02 Score=27.06 Aligned_cols=123 Identities=12% Similarity=0.114 Sum_probs=63.1
Q ss_pred CEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCEEEEeCC---CCeEEEcCCC--eEEecCCCCCcccEEEccCCcEE
Q 018705 73 GWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNE---KGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLY 146 (351)
Q Consensus 73 g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~d~~---~gl~~~~~~g--~~~l~~~~~~~n~l~~d~dG~ly 146 (351)
..++.++.+ |....+.-. .+..+ .+.+.++|+=|.+-.+ ..+-.++..+ +..+.. .-=|.+.+.|.|++.
T Consensus 251 q~Lyll~t~-g~s~~V~L~k~GPVh-dv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 251 QTLYLLATQ-GESVSVPLLKEGPVH-DVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GPRNTAFFNPHGNII 326 (566)
T ss_pred ceEEEEEec-CceEEEecCCCCCce-EEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CCccceEECCCCCEE
Confidence 346666653 333222222 34456 7777777754433222 2333334444 333322 234667788888755
Q ss_pred EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccc--eEEEcCCCCEEEEEecceeEEee
Q 018705 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN--GIALSKNEDFVVVCESWKRYWLK 216 (351)
Q Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n--gi~~~~dg~~lyv~~~~~~~~i~ 216 (351)
+-..- |.-.|.+=.||..+.+ . ...+..+| -..++|||.+++.+.+.-|++++
T Consensus 327 ~lAGF--------------GNL~G~mEvwDv~n~K--~-i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 327 LLAGF--------------GNLPGDMEVWDVPNRK--L-IAKFKAANTTVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred EEeec--------------CCCCCceEEEeccchh--h-ccccccCCceEEEEcCCCcEEEEEeccccEEec
Confidence 43321 1124677777765421 1 12222233 36789999977777665455554
No 362
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=44.28 E-value=3.4e+02 Score=27.10 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=27.1
Q ss_pred eEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCC--CCCcccEEEccCCcEEEEe
Q 018705 99 LTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPD--ASFTNDVIAASDGTLYFTV 149 (351)
Q Consensus 99 l~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~--~~~~n~l~~d~dG~ly~t~ 149 (351)
+..++..+|.++....-.++++. .|...+... ..-+.++++.|| .+|.--
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred eecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeee
Confidence 33345556666655555666664 442222221 256778888888 555443
No 363
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=44.01 E-value=2.5e+02 Score=25.44 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=26.7
Q ss_pred eEEcCCCCEEEEeCCCCeEEEc-CCC-eEEe-----c-CCCCCcccEEEccCCcEEEEeC
Q 018705 99 LTTTKDGGVILCDNEKGLLKVT-EEG-VEAI-----V-PDASFTNDVIAASDGTLYFTVA 150 (351)
Q Consensus 99 l~~d~~G~L~v~d~~~gl~~~~-~~g-~~~l-----~-~~~~~~n~l~~d~dG~ly~t~~ 150 (351)
++...+|++....-.+.+-... +|. -... . +..-.-.-++.+||+.+.+-..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE 62 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc
Confidence 4566788877665444332222 343 2111 1 1112334588999997665443
No 364
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=43.95 E-value=2.5e+02 Score=25.58 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCeEEEEEc------CCEEEEEEcCCCeEEEEeecC--CccccceEEcCCCCEEEEeCCC-----CeEEEcC-CC-eEEe
Q 018705 63 KGALYTATR------DGWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNEK-----GLLKVTE-EG-VEAI 127 (351)
Q Consensus 63 ~g~lyv~~~------~g~I~~~d~~~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~d~~~-----gl~~~~~-~g-~~~l 127 (351)
++.+|+-.. ...++++|+.+.+++...... .+.. ..+.--++.|||..... .+.++++ +. .+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ-PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV 201 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc-ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence 567776321 245889999888887654322 2222 33333467899875432 2467775 44 4444
Q ss_pred cCCC--CCcc----cE-EEccCCcEEEEeC
Q 018705 128 VPDA--SFTN----DV-IAASDGTLYFTVA 150 (351)
Q Consensus 128 ~~~~--~~~n----~l-~~d~dG~ly~t~~ 150 (351)
.... ..|. .. ++-.++.||+.-.
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 3211 1121 11 2223678888654
No 365
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=43.62 E-value=2e+02 Score=26.70 Aligned_cols=82 Identities=10% Similarity=0.027 Sum_probs=52.1
Q ss_pred EEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC--CC--eEEecCCC---CCcccEEE
Q 018705 69 ATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE--EG--VEAIVPDA---SFTNDVIA 139 (351)
Q Consensus 69 ~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~--~g--~~~l~~~~---~~~n~l~~ 139 (351)
+..-|-|..+|..+++. ..+...++..+ .|.+.|+. +|.++-+...-+|++. ++ +-++..-. ..+-++.+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sIN-eik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSIN-EIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccch-hhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 33467778888866655 34445556667 88888776 6877777777777763 44 44443322 45666778
Q ss_pred ccCCcEEEEeCC
Q 018705 140 ASDGTLYFTVAS 151 (351)
Q Consensus 140 d~dG~ly~t~~~ 151 (351)
+.+|....+..+
T Consensus 190 ~~~gd~i~ScGm 201 (385)
T KOG1034|consen 190 SLDGDRIASCGM 201 (385)
T ss_pred cCCCCeeeccCC
Confidence 888875555543
No 366
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=42.39 E-value=2.8e+02 Score=25.57 Aligned_cols=87 Identities=9% Similarity=0.058 Sum_probs=43.6
Q ss_pred CCeEEEEE--cCCEEEEEEc--CCCeEEEEeecC--CccccceEEcCCCCEEEEeCC------------CCeEEEcC-CC
Q 018705 63 KGALYTAT--RDGWVKYFIL--HNETLVNWKHID--SQSLLGLTTTKDGGVILCDNE------------KGLLKVTE-EG 123 (351)
Q Consensus 63 ~g~lyv~~--~~g~I~~~d~--~~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~d~~------------~gl~~~~~-~g 123 (351)
++.+|+.. ....++++|. .+.++....... .+...+++. -++.|||.-.. ..++++++ ..
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE-ECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 67888732 2346888885 234555443322 122202222 46789987542 13666775 44
Q ss_pred -eEEecCCCCC-cccE-EE-ccCCcEEEEeC
Q 018705 124 -VEAIVPDASF-TNDV-IA-ASDGTLYFTVA 150 (351)
Q Consensus 124 -~~~l~~~~~~-~n~l-~~-d~dG~ly~t~~ 150 (351)
.+.+...... -.+. ++ .-+|.||+.-.
T Consensus 96 ~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 96 SWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred EEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 4444321111 1122 22 35788998754
No 367
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.85 E-value=2.6e+02 Score=25.09 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=50.9
Q ss_pred ceEEEeeC-CCeEEEEEcCCEEEEEEcCCCeEEE---EeecCCccccceEEc-CCCCEEEEeCCCCeEEEc-CC--C-eE
Q 018705 55 EDVSVVVS-KGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVT-EE--G-VE 125 (351)
Q Consensus 55 e~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~~~~---~~~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~-~~--g-~~ 125 (351)
=+++|.+. ++.+++...||.+..+|. +..... +.+.....+ .+... .+++.++..+..+.++++ ++ . +.
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~-~~~s~Pi~~~kEH~~EV~-Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~ 141 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDL-TMPSKPIHKFKEHKREVY-SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ 141 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEecc-CCCCcchhHHHhhhhheE-EeccccccceeEEeeccCCceEeecCCCCcceE
Confidence 35666643 356777888888888874 222111 111112223 33333 234556655666777776 22 2 55
Q ss_pred EecCCCCCcccEEEcc-CCcEEEEeCC
Q 018705 126 AIVPDASFTNDVIAAS-DGTLYFTVAS 151 (351)
Q Consensus 126 ~l~~~~~~~n~l~~d~-dG~ly~t~~~ 151 (351)
++......+...+++| .++++.+.++
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccC
Confidence 5544435566666776 3567776665
No 368
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=41.72 E-value=3.7e+02 Score=26.78 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=56.6
Q ss_pred eEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe-cce-eEEeecCCCCceeEEeccCCCCCCc-eEECCCCCEEE
Q 018705 171 QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE-SWK-RYWLKGDRAGILDAFIENLPGGPDN-INLAPDGSFWI 247 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~-~~~-~~~i~~~~~~~~~~~~~~~~g~pd~-i~~d~~G~lwv 247 (351)
.|+.++-++....+-...-.-...+++++++...-|.. ..- +..+-+.+ +. ... +++-.|.| +.+.+.||+.+
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~--~v~-df~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GK--PVF-DFPEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CC--EeE-eCCCCCccceEECCCCCEEE
Confidence 57887765333332222233345688888887333322 221 44444332 22 112 23334665 67899999554
Q ss_pred EEecCCc----hhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEE
Q 018705 248 GLIKMNQ----TGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN 306 (351)
Q Consensus 248 a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~ 306 (351)
=.+-++. .++|.. . ++.+.+.. -....++.+.| +|+.+..-.
T Consensus 328 lAGFGNL~G~mEvwDv~----n-~K~i~~~~-----------a~~tt~~eW~P-dGe~flTAT 373 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVP----N-RKLIAKFK-----------AANTTVFEWSP-DGEYFLTAT 373 (566)
T ss_pred EeecCCCCCceEEEecc----c-hhhccccc-----------cCCceEEEEcC-CCcEEEEEe
Confidence 4332222 223221 1 33333221 22346888899 998776543
No 369
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=41.66 E-value=26 Score=20.93 Aligned_cols=14 Identities=36% Similarity=0.218 Sum_probs=9.7
Q ss_pred CChhhHHHHHHHHH
Q 018705 1 MAPKSFLLACLLAF 14 (351)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (351)
|+..|+++++++++
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 88888866665544
No 370
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=41.13 E-value=2.6e+02 Score=28.20 Aligned_cols=140 Identities=11% Similarity=0.055 Sum_probs=69.8
Q ss_pred CceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEE---Ee------ecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC
Q 018705 54 PEDVSVVVSK-GALYTATRDGWVKYFILHNETLVN---WK------HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG 123 (351)
Q Consensus 54 pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~---~~------~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g 123 (351)
.-++.+-+.+ .+++||+..|.|++.+.++.+... +. ...+..+ .+-..+-+...+...+...++++.++
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~-~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY-AVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE-eeecCCCccceeeeeccceeEecccc
Confidence 3455555433 467889999999987654433221 11 0112223 55555666555544445667776422
Q ss_pred -----eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec---Cccccce
Q 018705 124 -----VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---GFYFANG 194 (351)
Q Consensus 124 -----~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~ng 194 (351)
...+-.......+++.+|-- .++++... .|.|..||........... +...-+-
T Consensus 429 ~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~-----------------~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~ 491 (555)
T KOG1587|consen 429 VIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG-----------------DGNLDIWDLLQDDEEPVLSQKVCSPALTR 491 (555)
T ss_pred CCCCcchhhhhccceeeeeEEcCcCceEEEEEcC-----------------CCceehhhhhccccCCcccccccccccce
Confidence 11111111346677777754 44444432 4678887754222211111 1122334
Q ss_pred EEEcCCCCEEEEEecce
Q 018705 195 IALSKNEDFVVVCESWK 211 (351)
Q Consensus 195 i~~~~dg~~lyv~~~~~ 211 (351)
+.++++|+.|-+++..+
T Consensus 492 ~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 492 VRWSPNGKLLAVGDANG 508 (555)
T ss_pred eecCCCCcEEEEecCCC
Confidence 55556666555555544
No 371
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.61 E-value=4.7e+02 Score=27.69 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=39.6
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcC----CCeEEEEeecCCccccceEEcCCCC--EEEEeCC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILH----NETLVNWKHIDSQSLLGLTTTKDGG--VILCDNE 113 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~----~g~~~~~~~~~~~p~~gl~~d~~G~--L~v~d~~ 113 (351)
.++++..+-..+.||..+|.|.++..+ .|.-..+...+..|.+|+++..+|. ++|++..
T Consensus 129 s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~ 193 (933)
T KOG2114|consen 129 SSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE 193 (933)
T ss_pred eEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence 356777555778889999999888531 1222344555666766999987774 5887754
No 372
>PHA02790 Kelch-like protein; Provisional
Probab=40.30 E-value=3.7e+02 Score=26.38 Aligned_cols=68 Identities=10% Similarity=-0.034 Sum_probs=35.4
Q ss_pred CCCEEEEeCC------CCeEEEcC-CC-eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEE
Q 018705 104 DGGVILCDNE------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK 174 (351)
Q Consensus 104 ~G~L~v~d~~------~gl~~~~~-~g-~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~ 174 (351)
++.||+.... ..+.++++ ++ ...++.-. ...+.-.+.-+|.||+.-... ....+.+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~---------------~~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP---------------NPTSVER 335 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC---------------CCCceEE
Confidence 3456665432 23566775 44 44333221 122222334578899875421 0135889
Q ss_pred EeCCCCeEEEee
Q 018705 175 YDPKLKETTVLH 186 (351)
Q Consensus 175 ~d~~~~~~~~~~ 186 (351)
||+.+++.+.+.
T Consensus 336 ydp~~n~W~~~~ 347 (480)
T PHA02790 336 WFHGDAAWVNMP 347 (480)
T ss_pred EECCCCeEEECC
Confidence 999877776543
No 373
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.74 E-value=3.6e+02 Score=26.06 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred ceEEEeeCC-CeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC-CC--eEEec
Q 018705 55 EDVSVVVSK-GALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-EG--VEAIV 128 (351)
Q Consensus 55 e~i~~d~~~-g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-~g--~~~l~ 128 (351)
|.++|++.. ..+++++.+|.++-+|.+.- +..........+..||.+...- ++.++.+..+.++++. ++ .+...
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Q ss_pred CCC---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC
Q 018705 129 PDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK 180 (351)
Q Consensus 129 ~~~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~ 180 (351)
... ....+.+.+++--.+++-.+.+ +.+..||-.+.
T Consensus 413 ~~~~~~~rl~c~~~~~~~a~~la~GG~k----------------~~~~vwd~~~~ 451 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVAFTLAFGGEK----------------AVLRVWDIFTN 451 (463)
T ss_pred cccccccceeecccCCCcceEEEecCcc----------------ceEEEeecccC
No 374
>PRK10115 protease 2; Provisional
Probab=39.15 E-value=4.6e+02 Score=27.18 Aligned_cols=37 Identities=5% Similarity=-0.019 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCeE--EEeecCccccceEEEcCCCCEEEEEec
Q 018705 170 GQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDFVVVCES 209 (351)
Q Consensus 170 g~l~~~d~~~~~~--~~~~~~~~~~ngi~~~~dg~~lyv~~~ 209 (351)
-.|+..|..+|+. +.+ .+. ..++++++|++.+|++..
T Consensus 153 ~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 153 YGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEe
Confidence 3588888887752 211 111 245899999987877643
No 375
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=38.32 E-value=3.1e+02 Score=25.09 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=53.6
Q ss_pred eEecCCCcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeE--EEEeecC-CccccceEEcCCCCEEEEe---CCCCe
Q 018705 44 TKLGEGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETL--VNWKHID-SQSLLGLTTTKDGGVILCD---NEKGL 116 (351)
Q Consensus 44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~--~~~~~~~-~~p~~gl~~d~~G~L~v~d---~~~gl 116 (351)
++|+.++ ---+|+|...+..+|++. +||.+..+|...-+- ..+..+. ..|+.-++..++.-=|.++ ....+
T Consensus 191 QLIAHDK--EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 191 QLIAHDK--EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred EEEecCc--ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 3455543 234888885445677654 589999999754322 2333333 3444233443433222221 22345
Q ss_pred EEEc---CCC-eEEecCCCCCcccEEEccCC-cEEEEe
Q 018705 117 LKVT---EEG-VEAIVPDASFTNDVIAASDG-TLYFTV 149 (351)
Q Consensus 117 ~~~~---~~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~ 149 (351)
..++ +.- +..+......+|+|+..|.- .-..|.
T Consensus 269 ~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 269 VILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred EEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 5555 222 44444444788999988864 344443
No 376
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=38.26 E-value=1.3e+02 Score=28.00 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=44.4
Q ss_pred eEecCCCcCCCceEEEeeCCCeE-EEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEE
Q 018705 44 TKLGEGCVNHPEDVSVVVSKGAL-YTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVIL 109 (351)
Q Consensus 44 ~~i~~~~~~~pe~i~~d~~~g~l-yv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v 109 (351)
.+|-+|+ .+-.++.++|++..+ -++..+-+|-.|...+.+...+..+....- |+++.++|+.-.
T Consensus 85 ckIdeg~-agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~k-g~~f~~dg~f~a 149 (447)
T KOG4497|consen 85 CKIDEGQ-AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVK-GYAFHPDGQFCA 149 (447)
T ss_pred EEeccCC-CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCce-eEEECCCCceee
Confidence 3566664 466788999877444 455567788888876766655544445556 999999997643
No 377
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.39 E-value=5e+02 Score=27.09 Aligned_cols=97 Identities=9% Similarity=0.141 Sum_probs=56.7
Q ss_pred CCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcC-CCCEEEEeCCCCeEEEcC----CC-e
Q 018705 53 HPEDVSVVVSK-GALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE----EG-V 124 (351)
Q Consensus 53 ~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~----~g-~ 124 (351)
....+.|.+-. ..|..|+.||-|-.||.+..+.. .+........ .+.|.+ .++.|++...+|+++.+. +. .
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR-DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~ 213 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR-DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE 213 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh-ceeeccCCCceEEEecCCceEEEeeccCchhHH
Confidence 34456666433 45566888999999987554332 2222222233 677774 578888888888888872 22 3
Q ss_pred EEecCCCCCcccEEEccCCcEEEEeCC
Q 018705 125 EAIVPDASFTNDVIAASDGTLYFTVAS 151 (351)
Q Consensus 125 ~~l~~~~~~~n~l~~d~dG~ly~t~~~ 151 (351)
..+.........+...|++ -|+++.+
T Consensus 214 ~k~~AH~GpV~c~nwhPnr-~~lATGG 239 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNR-EWLATGG 239 (839)
T ss_pred HHhhcccCceEEEeecCCC-ceeeecC
Confidence 3333322455566677854 5555543
No 378
>PF13964 Kelch_6: Kelch motif
Probab=37.18 E-value=90 Score=19.48 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=23.6
Q ss_pred EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (351)
Q Consensus 139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 186 (351)
+.-++.||+--..... ......+++||+.+++.+.+.
T Consensus 8 v~~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEECC
Confidence 3446678886543110 122457999999998877653
No 379
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=35.87 E-value=1.4e+02 Score=26.75 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=34.2
Q ss_pred CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceE----Ec-CCCCEEEEeCCCCeEEE
Q 018705 64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLT----TT-KDGGVILCDNEKGLLKV 119 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~----~d-~~G~L~v~d~~~gl~~~ 119 (351)
..|.+|+.+|.|+.+|++.-.+..-...++-|. -|. +| -|.++.|+...+.++.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 568889999999999985433322223334443 332 34 56788888766666654
No 380
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.64 E-value=4.8e+02 Score=26.09 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=32.4
Q ss_pred CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEE
Q 018705 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYW 214 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~ 214 (351)
+|.|..||...+ ++......-.|+-++++|+|..+.|++..+.++
T Consensus 280 DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 280 DGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQ 324 (545)
T ss_pred CCeEEEEEcCCC-eeeeeeecccceEEEEcCCCcEEEEEcCCceEE
Confidence 578999998755 444444445699999999999777777666333
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=33.66 E-value=1.2e+02 Score=19.23 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.1
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEc
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFIL 80 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~ 80 (351)
..+.+.|..+.+.+++.+|.|+.+..
T Consensus 15 ~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 15 SCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred EEEEECCCCCEEEEEECCCeEEEEEC
Confidence 37789988899999999999887765
No 382
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=33.39 E-value=4.5e+02 Score=25.31 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=70.9
Q ss_pred ceEEEeeC-CCeEEEEEcCCEEEEEEcCCCeE--------EEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEc--CC
Q 018705 55 EDVSVVVS-KGALYTATRDGWVKYFILHNETL--------VNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--EE 122 (351)
Q Consensus 55 e~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~~--------~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~~ 122 (351)
.++.|++. .+.+..+..++.|..||.+.... ..+........ .+++.. +..||.+-...+.+.+. +.
T Consensus 181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCC
Confidence 45777753 36677788888999998633211 11211112222 333332 22455444344444443 21
Q ss_pred C---e-EEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EEEeecCccccceE
Q 018705 123 G---V-EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGI 195 (351)
Q Consensus 123 g---~-~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~ngi 195 (351)
+ . +.......-.|++++.|-+ .|..|.++ ++.|..||+.+-. +..+...-.....|
T Consensus 260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-----------------D~tV~LwDlRnL~~~lh~~e~H~dev~~V 322 (422)
T KOG0264|consen 260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA-----------------DKTVALWDLRNLNKPLHTFEGHEDEVFQV 322 (422)
T ss_pred CCCCCcccccccCCceeEEEeCCCCCceEEeccC-----------------CCcEEEeechhcccCceeccCCCcceEEE
Confidence 1 1 1111112578889999854 56655554 5678888875321 11222222344578
Q ss_pred EEcCCCCEEEEEe
Q 018705 196 ALSKNEDFVVVCE 208 (351)
Q Consensus 196 ~~~~dg~~lyv~~ 208 (351)
.+||+...+..++
T Consensus 323 ~WSPh~etvLASS 335 (422)
T KOG0264|consen 323 EWSPHNETVLASS 335 (422)
T ss_pred EeCCCCCceeEec
Confidence 8999888666544
No 383
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.23 E-value=1.8e+02 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.157 Sum_probs=17.1
Q ss_pred cccceEEEcCCCCEEEEEecce--eEEee
Q 018705 190 YFANGIALSKNEDFVVVCESWK--RYWLK 216 (351)
Q Consensus 190 ~~~ngi~~~~dg~~lyv~~~~~--~~~i~ 216 (351)
..|.-+++||.+++|..-+.++ ++.++
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~ 386 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLE 386 (733)
T ss_pred cCcceeeeCcccchheeecCCceEEEEec
Confidence 3566688888887666555444 45544
No 384
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=33.05 E-value=4.3e+02 Score=25.08 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=56.5
Q ss_pred ccccceEEcC--CCCEEEEeCCCCeEEEcC-CC-eEE----ecCCCCCcccEEEccC-CcEEEEeCCCccCCcccccccc
Q 018705 94 QSLLGLTTTK--DGGVILCDNEKGLLKVTE-EG-VEA----IVPDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMA 164 (351)
Q Consensus 94 ~p~~gl~~d~--~G~L~v~d~~~gl~~~~~-~g-~~~----l~~~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~ 164 (351)
.-+ ||.+.+ .|+|.-+|...+++.-.+ +| .++ +......+.+|+.+|. .+++++++-
T Consensus 213 EGy-~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~------------- 278 (440)
T KOG0302|consen 213 EGY-GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC------------- 278 (440)
T ss_pred cce-eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec-------------
Confidence 345 666664 677777776655554443 55 332 2222267889999885 468888764
Q ss_pred cccCCceEEEEeCCCCe--EEEeec-CccccceEEEcCCCCEEEEEecce--eEE
Q 018705 165 EGKPYGQLRKYDPKLKE--TTVLHE-GFYFANGIALSKNEDFVVVCESWK--RYW 214 (351)
Q Consensus 165 ~~~~~g~l~~~d~~~~~--~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~--~~~ 214 (351)
+|.|-.||-..+. ..+..+ .-.-.|-|.++.+..+|-.....+ ++|
T Consensus 279 ----DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 279 ----DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW 329 (440)
T ss_pred ----CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE
Confidence 4666667644331 111111 122467778877766333333333 444
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=32.95 E-value=68 Score=16.80 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=16.2
Q ss_pred CceEEEeeCCCeEEEEEcCCEEEEE
Q 018705 54 PEDVSVVVSKGALYTATRDGWVKYF 78 (351)
Q Consensus 54 pe~i~~d~~~g~lyv~~~~g~I~~~ 78 (351)
..++.+.+.+..+.++..++.+..+
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEc
Confidence 4567777555666667777766554
No 386
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=31.86 E-value=1.3e+02 Score=18.58 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=23.9
Q ss_pred eeEEEEECCEEEEEecCCCeEEEEeCCCC-CCC
Q 018705 316 VTSAAEFDGNLYLASLQSNFIGILPLDGP-EPQ 347 (351)
Q Consensus 316 ~~~~~~~~g~L~ig~~~~~~i~~~~~~~~-~~~ 347 (351)
...+...++.+|++.. ..++.++|..+. +|.
T Consensus 4 a~~v~v~g~yaYva~~-~~Gl~IvDISnPs~P~ 35 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADG-NNGLVIVDISNPSNPV 35 (42)
T ss_pred EEEEEEECCEEEEEeC-CCCEEEEECCCCCCCE
Confidence 4456678899999965 678999998776 553
No 387
>PRK10626 hypothetical protein; Provisional
Probab=30.09 E-value=1.8e+02 Score=25.72 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=17.2
Q ss_pred CChhhHHHHHH-HHHHHHHh-ccCCCcccc
Q 018705 1 MAPKSFLLACL-LAFTVQIF-FSLSVSSLA 28 (351)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 28 (351)
|..++++++++ ++...+.+ ..|+++|..
T Consensus 1 ~mrk~~l~~~L~l~s~~a~A~~qC~V~l~~ 30 (239)
T PRK10626 1 MMRKMLLAALLSLTAMQAQADYQCSVTPQD 30 (239)
T ss_pred ChHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 55666665555 33344444 679999886
No 388
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=29.94 E-value=2.6e+02 Score=28.50 Aligned_cols=85 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcC------------------CEEEEEEcCCCeEE
Q 018705 25 SSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRD------------------GWVKYFILHNETLV 86 (351)
Q Consensus 25 ~~~~~~~~~p~~~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~------------------g~I~~~d~~~g~~~ 86 (351)
||.. |.++..+...+....+.-..-....+|++.+.+|+...+ -.|+-+|.++|+.+
T Consensus 365 D~gn-----pD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~k 439 (773)
T COG4993 365 DPGN-----PDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLK 439 (773)
T ss_pred CCCC-----CCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCccee
Q ss_pred EE-----------------------eecCCccccceEEcCCCCEEEEeCCCC
Q 018705 87 NW-----------------------KHIDSQSLLGLTTTKDGGVILCDNEKG 115 (351)
Q Consensus 87 ~~-----------------------~~~~~~p~~gl~~d~~G~L~v~d~~~g 115 (351)
-+ ......|. -+..+++|.+||-|...|
T Consensus 440 W~yQtvhhDlWDmDvp~qp~L~D~~~DG~~vpa-lv~ptk~G~~YVlDRrtG 490 (773)
T COG4993 440 WVYQTVHHDLWDMDVPAQPTLLDITKDGKVVPA-LVHPTKNGFIYVLDRRTG 490 (773)
T ss_pred eeeeccCcchhcccCCCCceEEEeecCCcEeee-eecccccCcEEEEEcCCC
No 389
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.57 E-value=1.5e+02 Score=30.32 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=43.0
Q ss_pred CeEEEEEcCCEEEEEEcCCCeEEEEeecC--CccccceEEcCCCCEEEEeCCCCeEEEc---CCC---eEEecCC----C
Q 018705 64 GALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG---VEAIVPD----A 131 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~~g---~~~l~~~----~ 131 (351)
..+-+|+..|.+|.++..+|+...+.... +-.. .+.+..+..+.++...+|.+.+. ..+ ...+... .
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 34445555555555554444333222211 1111 33344444555555555555554 211 1111111 1
Q ss_pred CCcccEEEccCC-cEEEEeCC
Q 018705 132 SFTNDVIAASDG-TLYFTVAS 151 (351)
Q Consensus 132 ~~~n~l~~d~dG-~ly~t~~~ 151 (351)
..+..++.++|| ++|..|+.
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred ceEEEEEecccccEEeecCCC
Confidence 578888999999 79988875
No 390
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=28.21 E-value=1.2e+02 Score=27.26 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=31.5
Q ss_pred ceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEe
Q 018705 98 GLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTV 149 (351)
Q Consensus 98 gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~ 149 (351)
|+.+-+|+.++.+....+.+|+. ++. ..++.-....+|+++++|+-.+..+.
T Consensus 256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA 311 (323)
T ss_pred ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc
Confidence 67777788777765555544443 333 33333222678999999985555443
No 391
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=27.21 E-value=6.5e+02 Score=25.33 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=35.0
Q ss_pred cccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705 190 YFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 190 ~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 251 (351)
.+.|.+-++|.|+++.++.... .+.++. ............+....++..|+.|++.++...
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~-~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT-DYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEec-chhhhhhccCccccccccceECCCCCEEEEeee
Confidence 5788999999999888876443 122221 111111111011112467899999998887643
No 392
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=26.66 E-value=3e+02 Score=27.98 Aligned_cols=79 Identities=9% Similarity=0.039 Sum_probs=41.0
Q ss_pred CCCeEEEEEcCCEEEEEEcCCCeEE----EEeecCCccccceEEc----CCC-CEEEEeCCCCeEEEcC--CC----eEE
Q 018705 62 SKGALYTATRDGWVKYFILHNETLV----NWKHIDSQSLLGLTTT----KDG-GVILCDNEKGLLKVTE--EG----VEA 126 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g~~~----~~~~~~~~p~~gl~~d----~~G-~L~v~d~~~gl~~~~~--~g----~~~ 126 (351)
....||++..+|.|-.+|...-.++ .+..... .. +..|| + | .++|...++...+.+. ++ ...
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~-nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HK-NAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhccccc-cc-ceeEeeccCC-CceeEEEccCCceeeeeeeccceeeccee
Confidence 4678999999999999886433332 0111110 01 33344 4 5 4566666665666652 22 222
Q ss_pred ecCCCCCcccEEEccCC
Q 018705 127 IVPDASFTNDVIAASDG 143 (351)
Q Consensus 127 l~~~~~~~n~l~~d~dG 143 (351)
+.......-++|+.+..
T Consensus 140 ~~GH~~SvkS~cf~~~n 156 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTN 156 (720)
T ss_pred ecccccccchhhhccCC
Confidence 22222445555666544
No 393
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=26.06 E-value=8.4e+02 Score=26.19 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=40.1
Q ss_pred CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEE-eCCC------CeEEEc-C-CC--eEEecCCCC
Q 018705 64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILC-DNEK------GLLKVT-E-EG--VEAIVPDAS 132 (351)
Q Consensus 64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~-d~~~------gl~~~~-~-~g--~~~l~~~~~ 132 (351)
...|+....++|..+|-.+...+.+......|...-++.|||+-.+- .... .+|..+ . .| ...+..+..
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 34455444456777776443444331122223225567788864332 2222 366666 2 33 222221112
Q ss_pred CcccEEEccCC---cEEEEeCC
Q 018705 133 FTNDVIAASDG---TLYFTVAS 151 (351)
Q Consensus 133 ~~n~l~~d~dG---~ly~t~~~ 151 (351)
.+---.+-.+| .+|+|+.+
T Consensus 400 aiprwrv~e~gdt~ivyv~~a~ 421 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVSDAS 421 (912)
T ss_pred cccceEecCCCCeEEEEEcCCC
Confidence 22233444555 37888865
No 394
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=25.92 E-value=3.3e+02 Score=25.16 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=29.3
Q ss_pred eEEcC-CCCEEEEeCCCCeEEEcCCCeEEecCC-----CCCcccEEEccCCc-EEEEe
Q 018705 99 LTTTK-DGGVILCDNEKGLLKVTEEGVEAIVPD-----ASFTNDVIAASDGT-LYFTV 149 (351)
Q Consensus 99 l~~d~-~G~L~v~d~~~gl~~~~~~g~~~l~~~-----~~~~n~l~~d~dG~-ly~t~ 149 (351)
+++++ ++.|++++-+..=+.+-++|..++... .+.|..|..-|.|. -|++|
T Consensus 174 ~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d 231 (330)
T KOG1379|consen 174 LALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISD 231 (330)
T ss_pred eeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccC
Confidence 45554 778998876643333334552222221 28899999888773 34444
No 395
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.43 E-value=4.4e+02 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.2
Q ss_pred CCCeEEEEEcCCEEEEEEcCCCeE
Q 018705 62 SKGALYTATRDGWVKYFILHNETL 85 (351)
Q Consensus 62 ~~g~lyv~~~~g~I~~~d~~~g~~ 85 (351)
.+..+.+-+.+|.++.||..+++.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCee
Confidence 567788888999999999977765
No 396
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=25.20 E-value=1.1e+02 Score=20.86 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.2
Q ss_pred eEEEEeCCCCeEEEee
Q 018705 171 QLRKYDPKLKETTVLH 186 (351)
Q Consensus 171 ~l~~~d~~~~~~~~~~ 186 (351)
.||+||+++++++...
T Consensus 42 KIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 5899999999987643
No 397
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=24.97 E-value=1.1e+02 Score=29.76 Aligned_cols=19 Identities=21% Similarity=0.669 Sum_probs=16.6
Q ss_pred CCCceEECCCCCEEEEEec
Q 018705 233 GPDNINLAPDGSFWIGLIK 251 (351)
Q Consensus 233 ~pd~i~~d~~G~lwva~~~ 251 (351)
+|.++.+|+||..|++...
T Consensus 468 lphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 468 LPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred cCCcceecCCCcEEeeccc
Confidence 6889999999999998654
No 398
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=24.97 E-value=3.2e+02 Score=25.45 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=33.2
Q ss_pred ceEEEEEECCC-CeEEEEEECCCCCcccceeEEE-EE---C---CEEEEEecCCCeEEEEeCCCCCCC
Q 018705 288 GARVVKVDGND-GKIIRDFNDPDATYISFVTSAA-EF---D---GNLYLASLQSNFIGILPLDGPEPQ 347 (351)
Q Consensus 288 ~~~v~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~-~~---~---g~L~ig~~~~~~i~~~~~~~~~~~ 347 (351)
...++.+|.++ |+.+..+..+.+.. .+.... .+ + +.+|.|.. .+-|.|+++.+..|.
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~--gl~~~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~~~~ 244 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSG--GLSSPAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSANPS 244 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT---EEEEEEE-TTSSSEE-EEEEEET-TSEEEEEE--TTSTT
T ss_pred CcEEEEEECCCCCceEEEEecCCCCc--cccccEEEeccCCCeEEEEEEEcC-CCcEEEEECCCCCcc
Confidence 35788999977 89988886544321 223222 11 1 68999988 667999999988774
No 399
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=24.94 E-value=5.3e+02 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=23.7
Q ss_pred CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEE
Q 018705 52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLV 86 (351)
Q Consensus 52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~ 86 (351)
....+|..+ ++|.+.++.. -..|+++++++|++.
T Consensus 144 ~HiNsV~~~-~~G~yLiS~R~~~~i~~I~~~tG~I~ 178 (299)
T PF14269_consen 144 FHINSVDKD-DDGDYLISSRNTSTIYKIDPSTGKII 178 (299)
T ss_pred cEeeeeeec-CCccEEEEecccCEEEEEECCCCcEE
Confidence 345577777 4566667665 567999998888774
No 400
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=24.33 E-value=1.8e+02 Score=19.15 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=27.5
Q ss_pred CceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE
Q 018705 235 DNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF 305 (351)
Q Consensus 235 d~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 305 (351)
..+++.+||+|.++...... .......++|+++ +|..-.+|
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~-----------------------------~~~~~~~l~Rln~-DGsLDttF 44 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNS-----------------------------SGNNDFVLARLNA-DGSLDTTF 44 (55)
T ss_pred EEEEECCCCcEEEEEEeecC-----------------------------CCcccEEEEEECC-CCCccCCc
Confidence 35678889999888653110 0123347999999 99876666
No 401
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=22.75 E-value=6.1e+02 Score=23.37 Aligned_cols=148 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred ecCCCcCCCceEEEeeCCC-eEEEEEcCCEEEEEE--cCCCeEEEE--------------eecCCccccceEEcCCC-CE
Q 018705 46 LGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFI--LHNETLVNW--------------KHIDSQSLLGLTTTKDG-GV 107 (351)
Q Consensus 46 i~~~~~~~pe~i~~d~~~g-~lyv~~~~g~I~~~d--~~~g~~~~~--------------~~~~~~p~~gl~~d~~G-~L 107 (351)
...|...+--++.|.|+.+ .|+++..||.|..|| ...|-+... ....+..+ |+++..+| .|
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn-gla~tSd~~~l 261 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN-GLAWTSDARYL 261 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee-eeeecccchhh
Q ss_pred EEEeCCCCeEEEc-CCC-eEEecCCC------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEe-CC
Q 018705 108 ILCDNEKGLLKVT-EEG-VEAIVPDA------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD-PK 178 (351)
Q Consensus 108 ~v~d~~~gl~~~~-~~g-~~~l~~~~------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d-~~ 178 (351)
|.+.....+..-+ ..| -+...-.. ..+--..-..+-.+++--.. .+.++.++ .+
T Consensus 262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~-----------------~~~lall~~~s 324 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPN-----------------DGSLALLNLLE 324 (397)
T ss_pred hhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEec-----------------CCeEEEEEccC
Q ss_pred CCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705 179 LKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211 (351)
Q Consensus 179 ~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~ 211 (351)
..+++.+...+...++.++-++-+.+|-.+.+.
T Consensus 325 gs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 325 GSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred ceEEEeeecccceeeEEeecCchhhhhccccCC
No 402
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=21.95 E-value=8.3e+02 Score=24.63 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=51.5
Q ss_pred ceEEcCCCCEEEEeCCC------CeEEEcCCC--eEEecC-CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705 98 GLTTTKDGGVILCDNEK------GLLKVTEEG--VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (351)
Q Consensus 98 gl~~d~~G~L~v~d~~~------gl~~~~~~g--~~~l~~-~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~ 168 (351)
..+.+|.|+-+..-++. ..|.+...+ .+.+.. ...+.|.+..+|.|++.+.-.-. ..
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~--------------s~ 515 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV--------------SR 515 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEec--------------cc
Confidence 56666888655443332 233333222 221111 11688999999999876654310 11
Q ss_pred CceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEE
Q 018705 169 YGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVV 206 (351)
Q Consensus 169 ~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv 206 (351)
.|.+..||.+-...+.... .....+-+.++|.|+++.-
T Consensus 516 ~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 516 RGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVT 554 (698)
T ss_pred ccceEEEecchhhhhhccCccccccccceECCCCCEEEE
Confidence 4678999876323332221 1223556889999984433
No 403
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=8.7e+02 Score=24.88 Aligned_cols=148 Identities=9% Similarity=0.144 Sum_probs=80.6
Q ss_pred ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCCCeEEEc-CCC--eEEecCC
Q 018705 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVT-EEG--VEAIVPD 130 (351)
Q Consensus 55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~-~~g--~~~l~~~ 130 (351)
-+|-+.|-+-.+.++..+|.+..|+-++.....-...+..|...-.|= +..-+.++.....+..++ .++ ++.+...
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 466666666677778889999999876665433333334443233332 333333333233343344 244 6666555
Q ss_pred CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-
Q 018705 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES- 209 (351)
Q Consensus 131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~- 209 (351)
..++..|++.|.-=..+|.+... .=.+|-|+.+=...+.+...-.+...|++.|....-+.+.+
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm---------------~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDM---------------TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ccceeeeeecCCCCeEEecCCcc---------------EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 57889999999775555544310 01344444321112233334456777899986664555433
Q ss_pred ce--eEEeec
Q 018705 210 WK--RYWLKG 217 (351)
Q Consensus 210 ~~--~~~i~~ 217 (351)
++ +.|--+
T Consensus 162 DrTVKVWslg 171 (794)
T KOG0276|consen 162 DRTVKVWSLG 171 (794)
T ss_pred cccEEEEEcC
Confidence 34 677543
No 404
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=21.75 E-value=1.9e+02 Score=17.04 Aligned_cols=19 Identities=5% Similarity=0.097 Sum_probs=13.5
Q ss_pred CCceEEEEEECCCCeEEEEEE
Q 018705 286 DAGARVVKVDGNDGKIIRDFN 306 (351)
Q Consensus 286 ~~~~~v~~~~~~~g~~~~~~~ 306 (351)
...+.|.++++ +|.. ..++
T Consensus 14 ~~~GTvf~~~~-~g~~-t~L~ 32 (34)
T TIGR03803 14 SGFGTLYRLST-AGGT-TVLH 32 (34)
T ss_pred CCceeEEEEcC-CCCe-EEEE
Confidence 44578999999 8876 4443
No 405
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=21.17 E-value=7.2e+02 Score=23.65 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEE---cCCCCEEEEeCCCCeEEEc---CCC--eEEec---CCC
Q 018705 63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT---TKDGGVILCDNEKGLLKVT---EEG--VEAIV---PDA 131 (351)
Q Consensus 63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~---d~~G~L~v~d~~~gl~~~~---~~g--~~~l~---~~~ 131 (351)
.+.++.|+.||-+..||. .|+..........|....+. ++.-.+++.......+++. +.. .+... ...
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 578889999998888887 55543332222223212221 2222345554444444443 211 22111 122
Q ss_pred CCcccEEEccCCcEEEEeC
Q 018705 132 SFTNDVIAASDGTLYFTVA 150 (351)
Q Consensus 132 ~~~n~l~~d~dG~ly~t~~ 150 (351)
..+.++.++++|..+++.+
T Consensus 194 ~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred cceeEEEecCCCCeEEeec
Confidence 6778888899998877654
No 406
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=1.3e+02 Score=28.62 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=0.0
Q ss_pred CceEEEeeCC-CeEEEEEcCCEEEEEEcCCCe
Q 018705 54 PEDVSVVVSK-GALYTATRDGWVKYFILHNET 84 (351)
Q Consensus 54 pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~ 84 (351)
+++.+||.++ +.+|.|..+|.|+.+|....+
T Consensus 238 ~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 238 IWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeeeeccCCcceeEEeccCceEEEEEccCCC
Done!