Query 018706
Match_columns 351
No_of_seqs 213 out of 428
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5608 LEA14-like dessication 99.9 3.2E-21 7E-26 166.1 15.6 122 81-205 27-151 (161)
2 COG5608 LEA14-like dessication 99.9 4.5E-21 9.8E-26 165.2 14.2 131 199-331 19-152 (161)
3 smart00769 WHy Water Stress an 99.8 6E-20 1.3E-24 150.1 12.5 99 217-315 2-100 (100)
4 smart00769 WHy Water Stress an 99.8 1.4E-19 3E-24 147.9 12.9 98 91-188 2-99 (100)
5 PF03168 LEA_2: Late embryogen 99.5 2.6E-13 5.7E-18 109.0 12.5 97 109-205 1-101 (101)
6 PF03168 LEA_2: Late embryogen 99.5 2.1E-13 4.5E-18 109.6 11.1 96 235-330 1-101 (101)
7 PLN03160 uncharacterized prote 98.3 4.1E-05 9E-10 71.3 15.6 107 85-193 65-183 (219)
8 PLN03160 uncharacterized prote 98.0 0.00012 2.6E-09 68.2 14.2 82 210-292 64-154 (219)
9 PF12505 DUF3712: Protein of u 96.3 0.1 2.2E-06 44.1 12.4 117 136-255 3-125 (125)
10 PF07092 DUF1356: Protein of u 92.1 1.8 3.8E-05 41.0 10.7 87 104-190 124-215 (238)
11 PF07092 DUF1356: Protein of u 92.1 1.9 4.2E-05 40.8 10.9 101 215-315 108-214 (238)
12 PF07705 CARDB: CARDB; InterP 90.9 2 4.4E-05 33.5 8.6 72 212-288 1-72 (101)
13 PF08626 TRAPPC9-Trs120: Trans 90.7 3.7 8E-05 47.4 13.6 52 105-160 652-704 (1185)
14 PF11906 DUF3426: Protein of u 89.4 4.6 9.9E-05 34.8 10.3 76 214-289 52-138 (149)
15 PF07705 CARDB: CARDB; InterP 89.1 4 8.6E-05 31.8 8.9 72 86-162 1-72 (101)
16 PF11797 DUF3324: Protein of u 79.1 14 0.0003 31.8 8.5 89 85-188 26-115 (140)
17 PF11906 DUF3426: Protein of u 79.0 30 0.00064 29.6 10.6 92 67-160 29-135 (149)
18 PF06280 DUF1034: Fn3-like dom 75.7 42 0.00091 27.3 12.5 51 266-326 59-111 (112)
19 PF11797 DUF3324: Protein of u 74.3 51 0.0011 28.3 10.7 91 211-316 26-117 (140)
20 COG3121 FimC P pilus assembly 70.5 38 0.00083 31.8 9.7 153 107-285 44-210 (235)
21 PF00927 Transglut_C: Transglu 70.0 26 0.00056 28.3 7.5 58 102-159 13-74 (107)
22 PRK09525 lacZ beta-D-galactosi 69.5 8 0.00017 44.1 5.7 48 234-284 638-687 (1027)
23 PF12505 DUF3712: Protein of u 67.5 12 0.00027 31.3 5.2 47 81-129 78-125 (125)
24 PRK10340 ebgA cryptic beta-D-g 61.3 15 0.00033 41.9 5.9 49 235-285 613-663 (1021)
25 PRK15211 fimbrial chaperone pr 60.3 1.5E+02 0.0033 27.8 12.2 158 107-284 39-206 (229)
26 PF08626 TRAPPC9-Trs120: Trans 58.9 1.6E+02 0.0035 34.2 13.7 42 85-126 777-821 (1185)
27 PF12690 BsuPI: Intracellular 58.0 39 0.00085 26.5 6.1 26 106-131 2-30 (82)
28 PF12690 BsuPI: Intracellular 55.1 57 0.0012 25.6 6.6 53 232-286 2-69 (82)
29 PF00927 Transglut_C: Transglu 46.1 1.2E+02 0.0026 24.3 7.5 60 228-287 13-76 (107)
30 PF12751 Vac7: Vacuolar segreg 45.8 34 0.00075 34.6 4.9 59 74-132 316-376 (387)
31 PRK15192 fimbrial chaperone Bc 44.6 2.8E+02 0.006 26.2 11.4 118 141-284 79-203 (234)
32 KOG3620 Uncharacterized conser 43.3 2.1E+02 0.0045 33.5 10.7 158 109-289 319-497 (1626)
33 PF10633 NPCBM_assoc: NPCBM-as 40.8 1.6E+02 0.0034 22.2 9.8 72 229-314 4-76 (78)
34 PF14874 PapD-like: Flagellar- 40.2 1.8E+02 0.0039 22.8 12.0 88 218-327 9-98 (102)
35 PRK09525 lacZ beta-D-galactosi 35.9 60 0.0013 37.2 5.5 47 109-158 639-687 (1027)
36 PRK10340 ebgA cryptic beta-D-g 35.9 69 0.0015 36.7 6.0 49 109-159 613-663 (1021)
37 PF07233 DUF1425: Protein of u 35.1 2.3E+02 0.005 22.5 7.7 52 103-157 23-78 (94)
38 PF12751 Vac7: Vacuolar segreg 35.0 64 0.0014 32.8 4.9 50 214-263 332-381 (387)
39 PRK15285 putative fimbrial cha 34.0 72 0.0016 30.4 4.9 122 141-284 77-209 (250)
40 PF05506 DUF756: Domain of unk 32.0 2E+02 0.0043 22.4 6.5 63 208-286 4-66 (89)
41 PF11611 DUF4352: Domain of un 31.6 2.7E+02 0.0059 22.3 8.6 79 84-162 9-102 (123)
42 PF02753 PapD_C: Pili assembly 29.7 18 0.00038 26.8 -0.0 44 110-158 1-44 (68)
43 PF02019 WIF: WIF domain; Int 29.1 1.6E+02 0.0034 25.4 5.7 66 176-243 53-118 (132)
44 PRK09918 putative fimbrial cha 29.0 4.8E+02 0.01 24.3 11.5 150 107-284 41-200 (230)
45 COG3121 FimC P pilus assembly 28.3 96 0.0021 29.1 4.7 45 108-158 165-209 (235)
46 PRK15285 putative fimbrial cha 27.9 81 0.0018 30.1 4.2 45 109-158 165-209 (250)
47 PF11622 DUF3251: Protein of u 27.4 3.9E+02 0.0084 24.1 8.0 34 222-257 68-101 (165)
48 PF14155 DUF4307: Domain of un 27.1 3.6E+02 0.0079 22.3 9.1 73 84-164 29-101 (112)
49 PF14356 DUF4403: Domain of un 27.0 4.5E+02 0.0098 26.8 9.7 192 123-334 210-424 (427)
50 smart00469 WIF Wnt-inhibitory 26.9 2.4E+02 0.0052 24.6 6.4 58 176-239 56-114 (136)
51 PF10633 NPCBM_assoc: NPCBM-as 26.7 2.3E+02 0.005 21.3 5.8 58 104-164 5-63 (78)
52 PRK15254 fimbrial chaperone pr 26.4 5.6E+02 0.012 24.2 11.8 159 107-284 33-199 (239)
53 PRK10899 hypothetical protein; 25.3 5.3E+02 0.011 29.6 10.7 69 246-314 927-1005(1022)
54 PF03756 AfsA: A-factor biosyn 24.5 4E+02 0.0088 22.0 9.5 79 62-142 47-129 (132)
55 PF12371 DUF3651: Protein of u 23.5 1.6E+02 0.0034 22.3 4.3 63 181-251 10-73 (73)
56 PRK10334 mechanosensitive chan 23.1 2.2E+02 0.0047 27.6 6.2 48 64-116 198-245 (286)
57 PF11611 DUF4352: Domain of un 22.2 4.1E+02 0.0089 21.2 8.5 62 227-288 33-102 (123)
58 PRK09926 putative chaperone pr 22.0 1.4E+02 0.0031 28.1 4.6 67 209-284 151-217 (246)
59 PF10651 DUF2479: Domain of un 21.9 1.6E+02 0.0035 25.9 4.7 54 201-257 3-61 (170)
60 PRK15224 pili assembly chapero 21.8 1.3E+02 0.0028 28.5 4.2 146 108-284 46-210 (237)
61 COG0315 MoaC Molybdenum cofact 21.3 80 0.0017 28.1 2.5 59 241-303 74-132 (157)
62 PF06280 DUF1034: Fn3-like dom 20.8 4.5E+02 0.0097 21.1 12.2 85 106-201 10-111 (112)
No 1
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=99.87 E-value=3.2e-21 Score=166.08 Aligned_cols=122 Identities=29% Similarity=0.415 Sum_probs=111.1
Q ss_pred ccCCCCCeEEEEeEEecccccceeEEEEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEEE
Q 018706 81 TIGFGKPTADVTAVHIPKINLERADIVIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVT 160 (351)
Q Consensus 81 ~~~f~~P~Vsv~~v~i~~vs~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv~ 160 (351)
+.-|++|.++.-..+|+.++..+++|...++|+||||||||+.++.|++||||++++.|...++.++|+++.++++++++
T Consensus 27 ~i~~~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~ 106 (161)
T COG5608 27 MIPVKKPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLR 106 (161)
T ss_pred ceEcCCCCceEEEEEEEEEeccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEE
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EehhhHHHHH-hccCCCce--eeEEEEEEEEEecccccceeeeeeecc
Q 018706 161 LIYDDIKNAY-DDIKPGMI--IPYKIKVDLIVDVPVFGRLTLPLEKNG 205 (351)
Q Consensus 161 l~~~~L~~~l-~~l~~~e~--i~Y~l~g~l~vd~pilG~~tiP~e~sG 205 (351)
+++..+.+|| +||.++++ +.|++++.+ ++.+. .+.+|+...+
T Consensus 107 ~d~~~~ke~w~~hi~ngErs~Ir~~i~~~v--~vg~~-d~eVpi~~~~ 151 (161)
T COG5608 107 LDNSKIKEWWVTHIENGERSTIRVRIKGVV--KVGGM-DYEVPIKDNE 151 (161)
T ss_pred EehHHHHHHHHHHhhccCcccEEEEEEEEE--EEccE-EEEEEEEEcc
Confidence 9999999999 79999998 666666666 44432 4788987766
No 2
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=99.86 E-value=4.5e-21 Score=165.16 Aligned_cols=131 Identities=24% Similarity=0.382 Sum_probs=114.8
Q ss_pred eeeeeccccCCCCCCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCe
Q 018706 199 LPLEKNGEIPIPYKPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGI 278 (351)
Q Consensus 199 iP~e~sGei~lp~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~ 278 (351)
+|+-.+|-.-...+|.++..+++|++++..++++...++|+|||+||||++++.|++++||+.+|+|.+.++.+|||++.
T Consensus 19 v~~~lS~~~i~~~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~ 98 (161)
T COG5608 19 VPSHLSGCMIPVKKPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSR 98 (161)
T ss_pred hHHHhhCCceEcCCCCceEEEEEEEEEeccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCe
Confidence 34444444444489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecccchHHHHHHhh-cCC--CeeEEEEEEEEEccCccceEeeeecccc
Q 018706 279 SYIDIPITFRPKDFGSALWDMI-RGK--GTGYTMKGHIDVDTPFGAMKLPISKEGG 331 (351)
Q Consensus 279 t~i~Vpvtv~~~~~~~~l~~l~-~~~--~i~Y~l~G~l~vd~pfG~~~iP~s~~G~ 331 (351)
+++++++++++..+..+|..++ ++. .++|+++|.+.+++.+ ..+|+...++
T Consensus 99 ~tvdv~l~~d~~~~ke~w~~hi~ngErs~Ir~~i~~~v~vg~~d--~eVpi~~~~~ 152 (161)
T COG5608 99 ETVDVPLRLDNSKIKEWWVTHIENGERSTIRVRIKGVVKVGGMD--YEVPIKDNET 152 (161)
T ss_pred EEEEEEEEEehHHHHHHHHHHhhccCcccEEEEEEEEEEEccEE--EEEEEEEccc
Confidence 9999999999999999887555 554 4899999988876554 7899988875
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=99.83 E-value=6e-20 Score=150.08 Aligned_cols=99 Identities=24% Similarity=0.524 Sum_probs=94.9
Q ss_pred eeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEEEEecccchHHHH
Q 018706 217 LEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIPITFRPKDFGSAL 296 (351)
Q Consensus 217 i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpvtv~~~~~~~~l 296 (351)
+++++|+++++.++++.++++|+|||+||+++.+++|+|++||..+|+|+..+...||+++++++++|++++...+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~~~~~~~ 81 (100)
T smart00769 2 VVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFLAEALI 81 (100)
T ss_pred cceeEeccccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehhHhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999988888889
Q ss_pred HHhhcCCCeeEEEEEEEEE
Q 018706 297 WDMIRGKGTGYTMKGHIDV 315 (351)
Q Consensus 297 ~~l~~~~~i~Y~l~G~l~v 315 (351)
+++.+++.++|+++|++++
T Consensus 82 ~~l~~~~~~~y~l~g~l~~ 100 (100)
T smart00769 82 WHIANGEEIPYRLDGKLTV 100 (100)
T ss_pred HhhccCCCccEEEEEEECC
Confidence 9999999999999999863
No 4
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=99.82 E-value=1.4e-19 Score=147.91 Aligned_cols=98 Identities=34% Similarity=0.515 Sum_probs=94.1
Q ss_pred EEeEEecccccceeEEEEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEEEEehhhHHHHH
Q 018706 91 VTAVHIPKINLERADIVIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAY 170 (351)
Q Consensus 91 v~~v~i~~vs~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l 170 (351)
+.+++|+.+++.+++|.++++|+|||++|+++.+++|+|++||+++++|..++.++|||+|++++++|+++++..+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~~~~~~~ 81 (100)
T smart00769 2 VVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFLAEALI 81 (100)
T ss_pred cceeEeccccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehhHhHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hccCCCceeeEEEEEEEE
Q 018706 171 DDIKPGMIIPYKIKVDLI 188 (351)
Q Consensus 171 ~~l~~~e~i~Y~l~g~l~ 188 (351)
.|+.+++.++|+++|++.
T Consensus 82 ~~l~~~~~~~y~l~g~l~ 99 (100)
T smart00769 82 WHIANGEEIPYRLDGKLT 99 (100)
T ss_pred HhhccCCCccEEEEEEEC
Confidence 999999999999999984
No 5
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.51 E-value=2.6e-13 Score=109.00 Aligned_cols=97 Identities=26% Similarity=0.441 Sum_probs=85.3
Q ss_pred EEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEEEEehhhHHHHHhccC---CCceeeEEEEE
Q 018706 109 DVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIK---PGMIIPYKIKV 185 (351)
Q Consensus 109 ~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~---~~e~i~Y~l~g 185 (351)
++.|+|||++++++++++|+++++|.+++++...+...+|+++++++.+++.+++..+.+++..+. ....+.|++++
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~~~l~~~~~~~~~~~v~~~~~g 80 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLPRLLKDLLAGRVPFDVTYRIRG 80 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHHHHHHhhhccccceEEEEEEEE
Confidence 589999999999999999999999999998888889999999999999999999999988885554 67789999999
Q ss_pred EEE-Eecccccceeeeeeecc
Q 018706 186 DLI-VDVPVFGRLTLPLEKNG 205 (351)
Q Consensus 186 ~l~-vd~pilG~~tiP~e~sG 205 (351)
++. ++.++++..++|++.+|
T Consensus 81 ~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 81 TFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEcccceeeeEEEeEEeEC
Confidence 998 57787788999998764
No 6
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.50 E-value=2.1e-13 Score=109.62 Aligned_cols=96 Identities=23% Similarity=0.498 Sum_probs=86.0
Q ss_pred EEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEEEEecccchHHHHHHhh---cCCCeeEEEEE
Q 018706 235 HLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIPITFRPKDFGSALWDMI---RGKGTGYTMKG 311 (351)
Q Consensus 235 ~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpvtv~~~~~~~~l~~l~---~~~~i~Y~l~G 311 (351)
+|+|+|||++++.+++++|+++.+|..+|.|...++..+|+++++.+.++++++...+.+.+.++. ....+.|+++|
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~~~l~~~~~~~~~~~v~~~~~g 80 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLPRLLKDLLAGRVPFDVTYRIRG 80 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHHHHHHhhhccccceEEEEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999998888 44589999999
Q ss_pred EEE-EccC-ccceEeeeeccc
Q 018706 312 HID-VDTP-FGAMKLPISKEG 330 (351)
Q Consensus 312 ~l~-vd~p-fG~~~iP~s~~G 330 (351)
++. ++.+ ++..++|++.+|
T Consensus 81 ~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 81 TFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEcccceeeeEEEeEEeEC
Confidence 999 5777 589999999875
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=98.25 E-value=4.1e-05 Score=71.30 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=79.8
Q ss_pred CCCeEEEEeEEecccccc---------eeEEEEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEE
Q 018706 85 GKPTADVTAVHIPKINLE---------RADIVIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETV 155 (351)
Q Consensus 85 ~~P~Vsv~~v~i~~vs~~---------~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v 155 (351)
..|++++.++++..++.. .++|.+++.|+|||..++...+.+-.++-.|..++.+..+ ++.++++++..+
T Consensus 65 k~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p-~g~~~ar~T~~l 143 (219)
T PLN03160 65 KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTP-PGKAKARRTMRM 143 (219)
T ss_pred cCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcC-CcccCCCCeEEE
Confidence 789999999999877642 4568888899999999999999999999999999999988 889999987777
Q ss_pred EEEEEEehhhH---HHHHhccCCCceeeEEEEEEEEEeccc
Q 018706 156 KIPVTLIYDDI---KNAYDDIKPGMIIPYKIKVDLIVDVPV 193 (351)
Q Consensus 156 ~vpv~l~~~~L---~~~l~~l~~~e~i~Y~l~g~l~vd~pi 193 (351)
...+.+....+ ..+..++. ++.+++.....+...+.+
T Consensus 144 ~~tv~~~~~~~~~~~~L~~D~~-~G~v~l~~~~~v~gkVkv 183 (219)
T PLN03160 144 NVTVDIIPDKILSVPGLLTDIS-SGLLNMNSYTRIGGKVKI 183 (219)
T ss_pred EEEEEEEeceeccchhHHHHhh-CCeEEEEEEEEEEEEEEE
Confidence 76665555443 23334433 445666555555444433
No 8
>PLN03160 uncharacterized protein; Provisional
Probab=98.05 E-value=0.00012 Score=68.20 Aligned_cols=82 Identities=11% Similarity=0.254 Sum_probs=68.2
Q ss_pred CCCCceeeeeeeEEeeccc---------ceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEE
Q 018706 210 PYKPDIDLEKIKFERFSFE---------ETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISY 280 (351)
Q Consensus 210 p~~P~v~i~~v~~~~vs~~---------~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~ 280 (351)
|..|.++++++++..+++. .+++.+.+++.|||...+...+.+-.++-.|..+|+|.++ ++.+++.+++.
T Consensus 64 Pk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p-~g~~~ar~T~~ 142 (219)
T PLN03160 64 VKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTP-PGKAKARRTMR 142 (219)
T ss_pred ccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcC-CcccCCCCeEE
Confidence 7899999999999887753 2457777899999999999999999999999999999986 47799998888
Q ss_pred EEEEEEecccch
Q 018706 281 IDIPITFRPKDF 292 (351)
Q Consensus 281 i~Vpvtv~~~~~ 292 (351)
+.+.+.+....+
T Consensus 143 l~~tv~~~~~~~ 154 (219)
T PLN03160 143 MNVTVDIIPDKI 154 (219)
T ss_pred EEEEEEEEecee
Confidence 887776654443
No 9
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=96.32 E-value=0.1 Score=44.12 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=73.6
Q ss_pred EEEEEcCCceeecCCCeEEE-EEEEEEehhhHH-HHHhccCCCceeeEEEEEEEEEecccccceeeeeeeccccCCC---
Q 018706 136 LVSGLIPDSGTIHAHGEETV-KIPVTLIYDDIK-NAYDDIKPGMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIP--- 210 (351)
Q Consensus 136 vasG~~~~~~~Ipa~g~t~v-~vpv~l~~~~L~-~~l~~l~~~e~i~Y~l~g~l~vd~pilG~~tiP~e~sGei~lp--- 210 (351)
+++-..+ ...+.+.+...+ .-++.+...+.. ++...+-..+++.++++|...+.+..+-...+|++ +.++++
T Consensus 3 f~~~~lP-~~~~~~~~~~~~~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~~~~~~g~l~~~~i~~~--k~i~l~Gln 79 (125)
T PF12505_consen 3 FATLDLP-QIKIKGNGTISIIDQTLTITDQDAFTQFVTALLFNEEVTLTLRGKTDTHLGGLPFSGIPFD--KTITLKGLN 79 (125)
T ss_pred eEEEECC-CEEecCCceEEEeeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEeeeEEEccEEEEEEeec--ceeeccccC
Confidence 4444555 233333333333 334444443333 44477777888999999996444332211235554 444443
Q ss_pred CCCceeeeeeeEEeec-ccceEEEEEEEEECCCCcccccCCeEEEE
Q 018706 211 YKPDIDLEKIKFERFS-FEETVAILHLKLENKNDFDLALNSLDYEV 255 (351)
Q Consensus 211 ~~P~v~i~~v~~~~vs-~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l 255 (351)
....+.+.++++-.-+ .++..+.+.+.+.||-++.+.+..+..+|
T Consensus 80 ~l~g~~I~~~~v~~~~~~~g~~~~~~~~l~NPS~~ti~lG~v~~~l 125 (125)
T PF12505_consen 80 GLKGFTISDFDVTGGTPADGINLNATVTLPNPSPLTIDLGNVTLNL 125 (125)
T ss_pred CCCCceEeeEEeecCCCCCcEEEEEEEEEcCCCeEEEEeccEEEeC
Confidence 4567778889877555 68899999999999999999998887764
No 10
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=92.14 E-value=1.8 Score=41.01 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=62.4
Q ss_pred eEEEEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEEEEehhh----HHHHHhcc-CCCce
Q 018706 104 ADIVIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDD----IKNAYDDI-KPGMI 178 (351)
Q Consensus 104 ~~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv~l~~~~----L~~~l~~l-~~~e~ 178 (351)
..+.-.+.|.|||=+|+.+.+++-++...-..++++.......|++.+...+.+.+...... +.++-..- ..=..
T Consensus 124 l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t~i~~~~~yv~~~Ct~~~ikvH~ 203 (238)
T PF07092_consen 124 LNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKTTIGDENSYVYKYCTWPKIKVHN 203 (238)
T ss_pred EEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeEEecCcchhHhHhhcCccceEEE
Confidence 34555699999999999999999999988889999998888899999888777766555432 22322211 11235
Q ss_pred eeEEEEEEEEEe
Q 018706 179 IPYKIKVDLIVD 190 (351)
Q Consensus 179 i~Y~l~g~l~vd 190 (351)
+-..+++++++.
T Consensus 204 i~l~~Q~Tvt~s 215 (238)
T PF07092_consen 204 IVLHMQGTVTVS 215 (238)
T ss_pred EEEEEEEEEEEE
Confidence 667777777653
No 11
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=92.09 E-value=1.9 Score=40.76 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=73.1
Q ss_pred eeeeeeeEEeec-ccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEEEEecccchH
Q 018706 215 IDLEKIKFERFS-FEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIPITFRPKDFG 293 (351)
Q Consensus 215 v~i~~v~~~~vs-~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpvtv~~~~~~ 293 (351)
++...+.|..-. .-...+...|.|.|||=+|+.+.+++-++.-....+|++.......|+|-+..++.+.+..+..+-.
T Consensus 108 v~s~~V~f~~~~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t~i~~~~ 187 (238)
T PF07092_consen 108 VKSVTVSFNPDKSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKTTIGDEN 187 (238)
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeEEecCcc
Confidence 444455554322 1234677779999999999999999999998889999999999999998887777665555544445
Q ss_pred HHHHHhhcCC-----CeeEEEEEEEEE
Q 018706 294 SALWDMIRGK-----GTGYTMKGHIDV 315 (351)
Q Consensus 294 ~~l~~l~~~~-----~i~Y~l~G~l~v 315 (351)
..++.+.... .+-..|.+.+++
T Consensus 188 ~yv~~~Ct~~~ikvH~i~l~~Q~Tvt~ 214 (238)
T PF07092_consen 188 SYVYKYCTWPKIKVHNIVLHMQGTVTV 214 (238)
T ss_pred hhHhHhhcCccceEEEEEEEEEEEEEE
Confidence 6577777654 455566666655
No 12
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=90.88 E-value=2 Score=33.50 Aligned_cols=72 Identities=11% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEEEEec
Q 018706 212 KPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIPITFR 288 (351)
Q Consensus 212 ~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpvtv~ 288 (351)
+|++.+.....-..-..+..+.+.+.|.|....+ ...+...++++|..+++-.+ ..|+++.+.++.+..+..
T Consensus 1 ~pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i---~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 1 KPDLTVSITVSPSNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTI---PSLAPGESETVTFTWTPP 72 (101)
T ss_dssp ---EEE-EEEC-SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEE---SEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEeeCCCcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEE---CCcCCCcEEEEEEEEEeC
Confidence 5777772222222334567889999999988777 66788889999999955444 578999999998888874
No 13
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=90.73 E-value=3.7 Score=47.39 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=40.0
Q ss_pred EEEEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceee-cCCCeEEEEEEEE
Q 018706 105 DIVIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTI-HAHGEETVKIPVT 160 (351)
Q Consensus 105 ~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~I-pa~g~t~v~vpv~ 160 (351)
...+.+.++||.+|.|.|.+| .+...|..+.+- +....| |++...++.+...
T Consensus 652 ~~~v~VtLqNPf~fel~I~~I--~L~~egv~fes~--~~s~~l~~p~s~~~v~L~g~ 704 (1185)
T PF08626_consen 652 PAEVKVTLQNPFKFELEISSI--SLSTEGVPFESY--PVSIVLLPPNSTQTVRLSGT 704 (1185)
T ss_pred eEEEEEEEECCccceEEEEEE--EEEEcCCccccc--eeeeEecCCCcceEEEEEEE
Confidence 467788999999999999999 888889887433 334666 7777777776544
No 14
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=89.43 E-value=4.6 Score=34.76 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=62.3
Q ss_pred ceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEE-ECCeEEEEEEeCC----------ceEEcCCCeEEEE
Q 018706 214 DIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVW-LSDASIGAAELTK----------SAKIDKNGISYID 282 (351)
Q Consensus 214 ~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~-lnG~~ia~G~~~~----------~~~I~~~g~t~i~ 282 (351)
.+++.+.++.......-.+.+...+.|..+++.++-.+.-++. .+|+.+++-.+.- ...++++++..+.
T Consensus 52 ~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~ 131 (149)
T PF11906_consen 52 ALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFR 131 (149)
T ss_pred eEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEE
Confidence 4666666777776667789999999999999999999999999 8999998877722 5678999998888
Q ss_pred EEEEecc
Q 018706 283 IPITFRP 289 (351)
Q Consensus 283 Vpvtv~~ 289 (351)
+.+...+
T Consensus 132 ~~~~~p~ 138 (149)
T PF11906_consen 132 LRLEDPP 138 (149)
T ss_pred EEeeCCC
Confidence 8877544
No 15
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=89.09 E-value=4 Score=31.80 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=46.0
Q ss_pred CCeEEEEeEEecccccceeEEEEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEEEEe
Q 018706 86 KPTADVTAVHIPKINLERADIVIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLI 162 (351)
Q Consensus 86 ~P~Vsv~~v~i~~vs~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv~l~ 162 (351)
+|.+.+........-.....+.+.+.|.|.-... ...+...++++|..+.+-.. ..|+++.+.++.+.+...
T Consensus 1 ~pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i---~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 1 KPDLTVSITVSPSNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTI---PSLAPGESETVTFTWTPP 72 (101)
T ss_dssp ---EEE-EEEC-SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEE---SEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEeeCCCcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEE---CCcCCCcEEEEEEEEEeC
Confidence 5777773333333334568889999999988755 66777789999998844333 478888888888877765
No 16
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=79.10 E-value=14 Score=31.85 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=65.1
Q ss_pred CCCeEEEEeEEecccccceeEEEEEEEEECCCCCCeeeeceEEEEEECCE-EEEEEEcCCceeecCCCeEEEEEEEEEeh
Q 018706 85 GKPTADVTAVHIPKINLERADIVIDVLIKNPNPIPIPLIDINYLVESDGR-KLVSGLIPDSGTIHAHGEETVKIPVTLIY 163 (351)
Q Consensus 85 ~~P~Vsv~~v~i~~vs~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~-~vasG~~~~~~~Ipa~g~t~v~vpv~l~~ 163 (351)
..|.+.+.++....++. .-.+.+.|.||.|.=+.=..+++.|+-.|. ++......+...+.+++.-.+.++ +..
T Consensus 26 ~~p~L~l~~v~~~~~n~---~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~--~~~ 100 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQING---RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIP--LGG 100 (140)
T ss_pred cCcccEEeeeeeeEECC---eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEec--CCC
Confidence 58999999999888877 456788999999988888889999998774 455444455788888766554444 333
Q ss_pred hhHHHHHhccCCCceeeEEEEEEEE
Q 018706 164 DDIKNAYDDIKPGMIIPYKIKVDLI 188 (351)
Q Consensus 164 ~~L~~~l~~l~~~e~i~Y~l~g~l~ 188 (351)
. .|++| .|+++.++.
T Consensus 101 ~-------~lk~G---~Y~l~~~~~ 115 (140)
T PF11797_consen 101 K-------KLKPG---KYTLKITAK 115 (140)
T ss_pred c-------CccCC---EEEEEEEEE
Confidence 2 34555 688888775
No 17
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=79.03 E-value=30 Score=29.64 Aligned_cols=92 Identities=10% Similarity=0.194 Sum_probs=61.4
Q ss_pred HHHHHHhhhhhhhcccCCCCC----eEEEEeEEecccccceeEEEEEEEEECCCCCCeeeeceEEEEE-ECCEEEEEEEc
Q 018706 67 VKDFIHDIGEKIEETIGFGKP----TADVTAVHIPKINLERADIVIDVLIKNPNPIPIPLIDINYLVE-SDGRKLVSGLI 141 (351)
Q Consensus 67 ~~~~~~~~~~k~~~~~~f~~P----~Vsv~~v~i~~vs~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~-~nG~~vasG~~ 141 (351)
...++..+|+.++=- ...| .+.+.+.++.......-.+.++..|.|-.+++.++-.+.-++. .+|+.+++=..
T Consensus 29 ~~~~~~~~C~~~gc~--v~~~~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 29 LRPLLEAACEVLGCP--VPPPRDIDALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred hhHHHHHhHHhcCCC--CCCccCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 344555556666422 1233 3455555566666567789999999999999999999988888 78888877665
Q ss_pred C----------CceeecCCCeEEEEEEEE
Q 018706 142 P----------DSGTIHAHGEETVKIPVT 160 (351)
Q Consensus 142 ~----------~~~~Ipa~g~t~v~vpv~ 160 (351)
. ....++++++..+.+.+.
T Consensus 107 ~P~~yl~~~~~~~~~l~pg~~~~~~~~~~ 135 (149)
T PF11906_consen 107 TPADYLPPGLAAQAGLPPGESVPFRLRLE 135 (149)
T ss_pred ChHHhcccccccccccCCCCeEEEEEEee
Confidence 2 134566666655555443
No 18
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=75.66 E-value=42 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=33.5
Q ss_pred EeCCceEEcCCCeEEEEEEEEecccchHHHHHHhhcCCCeeEEEEEEEEEccCcc--ceEeee
Q 018706 266 ELTKSAKIDKNGISYIDIPITFRPKDFGSALWDMIRGKGTGYTMKGHIDVDTPFG--AMKLPI 326 (351)
Q Consensus 266 ~~~~~~~I~~~g~t~i~Vpvtv~~~~~~~~l~~l~~~~~i~Y~l~G~l~vd~pfG--~~~iP~ 326 (351)
......+|+|+++..+.|.++++. ++.. ...+-+.|.+.+..--+ .+.||+
T Consensus 59 ~~~~~vTV~ag~s~~v~vti~~p~-~~~~---------~~~~~~eG~I~~~~~~~~~~lsIPy 111 (112)
T PF06280_consen 59 FSPDTVTVPAGQSKTVTVTITPPS-GLDA---------SNGPFYEGFITFKSSDGEPDLSIPY 111 (112)
T ss_dssp ---EEEEE-TTEEEEEEEEEE--G-GGHH---------TT-EEEEEEEEEESSTTSEEEEEEE
T ss_pred eCCCeEEECCCCEEEEEEEEEehh-cCCc---------ccCCEEEEEEEEEcCCCCEEEEeee
Confidence 345678999999999999999733 2222 34567889999887755 488886
No 19
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=74.28 E-value=51 Score=28.32 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=66.8
Q ss_pred CCCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCe-EEEEEEeCCceEEcCCCeEEEEEEEEecc
Q 018706 211 YKPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDA-SIGAAELTKSAKIDKNGISYIDIPITFRP 289 (351)
Q Consensus 211 ~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~-~ia~G~~~~~~~I~~~g~t~i~Vpvtv~~ 289 (351)
..|++.+.++..+.... .-.+.+.+.||.+.=|.=-.+.+.|+-.|. .+..-...+...+.|++.-.+.|+..-..
T Consensus 26 ~~p~L~l~~v~~~~~n~---~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~~ 102 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQING---RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGKK 102 (140)
T ss_pred cCcccEEeeeeeeEECC---eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCcC
Confidence 57889988888766655 667888999999998888888999998774 44444445568999999887777664211
Q ss_pred cchHHHHHHhhcCCCeeEEEEEEEEEc
Q 018706 290 KDFGSALWDMIRGKGTGYTMKGHIDVD 316 (351)
Q Consensus 290 ~~~~~~l~~l~~~~~i~Y~l~G~l~vd 316 (351)
| .+-.|+++..+.-+
T Consensus 103 ---------l---k~G~Y~l~~~~~~~ 117 (140)
T PF11797_consen 103 ---------L---KPGKYTLKITAKSG 117 (140)
T ss_pred ---------c---cCCEEEEEEEEEcC
Confidence 1 23479998888743
No 20
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.47 E-value=38 Score=31.82 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=86.1
Q ss_pred EEEEEEECCCCCCeeeeceEEEEEECCE------EEEEEEcCCceeecCCCeEEEEEEEEEehhhHHHHHhccCCCceee
Q 018706 107 VIDVLIKNPNPIPIPLIDINYLVESDGR------KLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIP 180 (351)
Q Consensus 107 ~v~l~V~NPNp~~L~l~~i~Y~l~~nG~------~vasG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~ 180 (351)
...+.|.|....|+-+ +.++++- ...=-..+--..|.|++...|+|--+-. .+..+.+.-
T Consensus 44 ~~sl~l~N~~~~p~Lv-----Q~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~---------~lP~drEsl 109 (235)
T COG3121 44 ETSLTLRNDGNQPYLV-----QSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN---------KLPADRESL 109 (235)
T ss_pred eeEEEEEcCCCCCEEE-----EEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC---------CCCCCceeE
Confidence 3567888888877655 3333321 1111223334567777777766643221 244566677
Q ss_pred EEEEEEEEEecccc-----cceeeeeeeccccCCCCCCc-eeee--eeeEEeecccceEEEEEEEEECCCCcccccCCeE
Q 018706 181 YKIKVDLIVDVPVF-----GRLTLPLEKNGEIPIPYKPD-IDLE--KIKFERFSFEETVAILHLKLENKNDFDLALNSLD 252 (351)
Q Consensus 181 Y~l~g~l~vd~pil-----G~~tiP~e~sGei~lp~~P~-v~i~--~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~ 252 (351)
|++...- +|-- +.-.+-+...-.|++.|.|. +.-. ++.| .+++.... ..|+|.||-++=+.+.++.
T Consensus 110 f~lnv~e---IPp~~~~~~~~n~lq~a~r~riKlf~RP~~l~~~~~~~~~-~L~~~~~~--~~l~v~Nptpy~vtl~~~~ 183 (235)
T COG3121 110 FRLNVDE---IPPKSKDDKGPNVLQLALRSRIKLFYRPAGLAGPPAEAPK-KLTWSRSG--NLLTVKNPTPYYVTLANLT 183 (235)
T ss_pred EEEEeee---cCCCCcccCCcceEEEEeeeeeeEEECcccCCCChhHhhh-eEEEEEcC--CEEEEECCCCcEEEEEEEE
Confidence 7776654 2211 11123334445566666664 2211 1111 22222222 6799999999999998776
Q ss_pred EEEEECCeEEEEEEeCCceEEcCCCeEEEEEEE
Q 018706 253 YEVWLSDASIGAAELTKSAKIDKNGISYIDIPI 285 (351)
Q Consensus 253 Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpv 285 (351)
... +|+.++ ....-|+++++..+.+|-
T Consensus 184 l~~--~~~~~~----~~~~mv~P~s~~~~~l~~ 210 (235)
T COG3121 184 LNV--GGRKLG----LNSGMVAPFSTRQFPLPS 210 (235)
T ss_pred Eee--CceecC----CCcceECCCccceeecCC
Confidence 555 888776 235668888888877775
No 21
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=69.97 E-value=26 Score=28.27 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=35.1
Q ss_pred ceeEEEEEEEEECCCCCCeeeec---eEEEEEECCEEEEEEE-cCCceeecCCCeEEEEEEE
Q 018706 102 ERADIVIDVLIKNPNPIPIPLID---INYLVESDGRKLVSGL-IPDSGTIHAHGEETVKIPV 159 (351)
Q Consensus 102 ~~~~l~v~l~V~NPNp~~L~l~~---i~Y~l~~nG~~vasG~-~~~~~~Ipa~g~t~v~vpv 159 (351)
-+.++.+.+.+.||.+.+|.=.. -...++-+|..-.... .....+|+++++..+.+.+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 45679999999999997654322 3345677887543322 2234788888777755553
No 22
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=69.45 E-value=8 Score=44.06 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=41.0
Q ss_pred EEEEEECCCCcccccC--CeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEE
Q 018706 234 LHLKLENKNDFDLALN--SLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIP 284 (351)
Q Consensus 234 l~l~V~NPN~fpL~i~--~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vp 284 (351)
..++|.|.+.| .+++ .+.|+|..||+.+++|.+ . ..|+|+.+..|.+|
T Consensus 638 ~~~~i~N~~~F-~~l~~~~~~w~~~~~G~~~~~g~~-~-~~~~p~~~~~i~l~ 687 (1027)
T PRK09525 638 LTIEVTSEYLF-RHSDNELLHWSVALDGKPLASGEV-P-LDLAPQGSQRITLP 687 (1027)
T ss_pred cEEEEEEcccC-CcccccEEEEEEEECCEEEEeeeE-c-cccCCCCceEEecC
Confidence 37999999998 5555 667899999999999997 3 57999999999998
No 23
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=67.47 E-value=12 Score=31.34 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=35.3
Q ss_pred ccCCCCCeEEEEeEEecccc-cceeEEEEEEEEECCCCCCeeeeceEEEE
Q 018706 81 TIGFGKPTADVTAVHIPKIN-LERADIVIDVLIKNPNPIPIPLIDINYLV 129 (351)
Q Consensus 81 ~~~f~~P~Vsv~~v~i~~vs-~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l 129 (351)
+-+|. .+.+.++++..-. .....+...+.+.||.++.+.+-.+++++
T Consensus 78 ln~l~--g~~I~~~~v~~~~~~~g~~~~~~~~l~NPS~~ti~lG~v~~~l 125 (125)
T PF12505_consen 78 LNGLK--GFTISDFDVTGGTPADGINLNATVTLPNPSPLTIDLGNVTLNL 125 (125)
T ss_pred cCCCC--CceEeeEEeecCCCCCcEEEEEEEEEcCCCeEEEEeccEEEeC
Confidence 33445 3448888876555 68899999999999999998888876653
No 24
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=61.32 E-value=15 Score=41.86 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=40.7
Q ss_pred EEEEECCCCcccccC--CeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEEE
Q 018706 235 HLKLENKNDFDLALN--SLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIPI 285 (351)
Q Consensus 235 ~l~V~NPN~fpL~i~--~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpv 285 (351)
.++|+|.+.| .+++ .+.|+|..||+.+.+|.+. ...|+|+++.++.+|+
T Consensus 613 ~~~i~N~~~F-~~l~~~~~~w~l~~dG~~~~~g~~~-~~~i~p~~~~~v~l~~ 663 (1021)
T PRK10340 613 ELKVENKLWF-TNLDDYTLHAEVRAEGETLASGQIK-LRDVAPNSEAPLQITL 663 (1021)
T ss_pred EEEEEECccC-CCccccEEEEEEEECCEEEEEeeec-cCccCCCCceEEEecC
Confidence 7999999988 4444 5678888999999999975 3479999999999875
No 25
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=60.33 E-value=1.5e+02 Score=27.81 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=84.7
Q ss_pred EEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEEEEehhhHHHHHhccCCCceeeEEEEEE
Q 018706 107 VIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVD 186 (351)
Q Consensus 107 ~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~g~ 186 (351)
.+.+.|.|....|.-+..--++-.-++...---..+-...|.+++...++|--. . ..+..+.+.-|.+...
T Consensus 39 ~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~-~--------~~LP~DRESlf~lnv~ 109 (229)
T PRK15211 39 NISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKT-D--------SALPKDRESLFWLNVQ 109 (229)
T ss_pred eEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC-C--------CCCCCCceEEEEEEEE
Confidence 466778898876644432111111112111112345456888888888777522 1 2345566677777665
Q ss_pred EEEecccc-cceeeeeeeccccCCCCCCc-ee------eeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEEC
Q 018706 187 LIVDVPVF-GRLTLPLEKNGEIPIPYKPD-ID------LEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLS 258 (351)
Q Consensus 187 l~vd~pil-G~~tiP~e~sGei~lp~~P~-v~------i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~ln 258 (351)
-.=..+-- +.=.+-+...-.|+|.|.|. +. ..+++|...+ -.+.|.||-+|=+.+..+. ++
T Consensus 110 ~IP~~~~~~~~n~l~iair~~iKLfyRP~~L~~~~~~~~~~L~~~~~~-------~~l~v~NpTPyyitl~~l~----v~ 178 (229)
T PRK15211 110 EIPPKPKASEGNVLAVALNTQVKLIYRPKALKEGRENAEKNLQIIHRG-------GETYLKNPTPYYFAVTGVK----LN 178 (229)
T ss_pred EcCCCCCccccceEEEEEEeeeeeEEcchhcccChhhhhhccEEEEeC-------CEEEEECCCCcEEEeEeEE----EC
Confidence 52111100 01123334445566767665 21 2344554211 1389999999999996664 68
Q ss_pred CeEEEEEE-e-CCceEEcCCCeEEEEEE
Q 018706 259 DASIGAAE-L-TKSAKIDKNGISYIDIP 284 (351)
Q Consensus 259 G~~ia~G~-~-~~~~~I~~~g~t~i~Vp 284 (351)
|..+.... . ....-|+|.++..+.++
T Consensus 179 ~~~~~~~~~~~~~~~mi~Pfs~~~~~~~ 206 (229)
T PRK15211 179 GQPVKLSDRVMNEIAQLAPFSEVSLGKL 206 (229)
T ss_pred CeeccccccccccceeECCCCcceEecC
Confidence 88763211 0 12245999999888764
No 26
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=58.87 E-value=1.6e+02 Score=34.22 Aligned_cols=42 Identities=14% Similarity=0.396 Sum_probs=30.7
Q ss_pred CCCeEEEEeEEecccc---cceeEEEEEEEEECCCCCCeeeeceE
Q 018706 85 GKPTADVTAVHIPKIN---LERADIVIDVLIKNPNPIPIPLIDIN 126 (351)
Q Consensus 85 ~~P~Vsv~~v~i~~vs---~~~~~l~v~l~V~NPNp~~L~l~~i~ 126 (351)
+.|.+++......... +++-.-.+.+.+.|-..+|+..-.+.
T Consensus 777 ~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~s 821 (1185)
T PF08626_consen 777 PQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFS 821 (1185)
T ss_pred CCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEE
Confidence 6899999888654433 57888889999999996555554444
No 27
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=57.98 E-value=39 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=18.6
Q ss_pred EEEEEEEECCCCCCeee---eceEEEEEE
Q 018706 106 IVIDVLIKNPNPIPIPL---IDINYLVES 131 (351)
Q Consensus 106 l~v~l~V~NPNp~~L~l---~~i~Y~l~~ 131 (351)
+.+.+.|.|+...++.| ++..|++.+
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v 30 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVV 30 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEE
Confidence 67899999999999998 677777775
No 28
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=55.11 E-value=57 Score=25.58 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=29.9
Q ss_pred EEEEEEEECCCCcccccC---CeEEEEEE---CCeE---------EEEEEeCCceEEcCCCeEEEEEEEE
Q 018706 232 AILHLKLENKNDFDLALN---SLDYEVWL---SDAS---------IGAAELTKSAKIDKNGISYIDIPIT 286 (351)
Q Consensus 232 ~~l~l~V~NPN~fpL~i~---~l~Y~l~l---nG~~---------ia~G~~~~~~~I~~~g~t~i~Vpvt 286 (351)
+.+.|+|.|+.+.++.+. +..|++.+ +|+. +.++- ...+|+|+.+.+......
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal--~~~~l~pGe~~~~~~~~~ 69 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQAL--QEETLEPGESLTYEETWD 69 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEES
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhhee--eEEEECCCCEEEEEEEEC
Confidence 578899999999888886 77777775 3433 33322 357888888877765544
No 29
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=46.08 E-value=1.2e+02 Score=24.28 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=38.1
Q ss_pred cceEEEEEEEEECCCCcccccCC---eEEEEEECCeEEEEEE-eCCceEEcCCCeEEEEEEEEe
Q 018706 228 EETVAILHLKLENKNDFDLALNS---LDYEVWLSDASIGAAE-LTKSAKIDKNGISYIDIPITF 287 (351)
Q Consensus 228 ~~t~~~l~l~V~NPN~fpL~i~~---l~Y~l~lnG~~ia~G~-~~~~~~I~~~g~t~i~Vpvtv 287 (351)
-+..+.+.+++.||-+.+|.=-. -...++-+|....... ......|+|+++..+.++++-
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 46789999999999877633211 2345567888653332 334688999999998888874
No 30
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=45.75 E-value=34 Score=34.64 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=38.0
Q ss_pred hhhhhhcccCCCCCe--EEEEeEEecccccceeEEEEEEEEECCCCCCeeeeceEEEEEEC
Q 018706 74 IGEKIEETIGFGKPT--ADVTAVHIPKINLERADIVIDVLIKNPNPIPIPLIDINYLVESD 132 (351)
Q Consensus 74 ~~~k~~~~~~f~~P~--Vsv~~v~i~~vs~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~n 132 (351)
|+..++=++.--+|= |+|..|+=.=++.++.-|.+.+.-.|||-|++.|.+++.+|+.-
T Consensus 316 ig~~~gFv~AttKpL~~v~v~~I~NVlaS~qELmfdl~V~A~NPn~~~V~I~d~dldIFAK 376 (387)
T PF12751_consen 316 IGFAIGFVFATTKPLTDVQVVSIQNVLASEQELMFDLTVEAFNPNWFTVTIDDMDLDIFAK 376 (387)
T ss_pred HHHHHHhhhhcCcccccceEEEeeeeeeccceEEEeeEEEEECCCeEEEEeccceeeeEec
Confidence 344443333334553 44444443344556666777777789999999999998888753
No 31
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=44.55 E-value=2.8e+02 Score=26.17 Aligned_cols=118 Identities=9% Similarity=0.124 Sum_probs=69.6
Q ss_pred cCCceeecCCCeEEEEEEEEEehhhHHHHHhccCCCceeeEEEEEEEEEecccccceeeeeeeccccCCCCCCc-ee---
Q 018706 141 IPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYKPD-ID--- 216 (351)
Q Consensus 141 ~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~g~l~vd~pilG~~tiP~e~sGei~lp~~P~-v~--- 216 (351)
.+-...|.+++...++|--. . ..|..+.+.-|.+...-.=..+- ..-.+-+...-.|++.|.|. +.
T Consensus 79 tPPlfrl~p~~~~~lRI~~~--~-------~~LP~DRESlf~lnv~~IPp~~~-~~n~l~iair~riKlFYRP~~L~~~~ 148 (234)
T PRK15192 79 TPPLFMLSARQENSMRVVYT--G-------APLPADRESLFTLSIAAIPSGKP-EANRVQMAFRSALKLLYRPEGLAGNP 148 (234)
T ss_pred cCCeEEECCCCceEEEEEEC--C-------CCCCCcceEEEEEEEEecCCCCC-CCcEEEEEEEeeeeEEEccccccCCh
Confidence 34456788888888766532 1 23556667777777665211100 01124444445567777775 22
Q ss_pred ---eeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEE
Q 018706 217 ---LEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIP 284 (351)
Q Consensus 217 ---i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vp 284 (351)
..+++|.... - .|.|.||-+|=+.+..+ .++|..+ ....-|+|.++..+.++
T Consensus 149 ~~a~~~L~~~~~~---~----~l~v~NpTPyyvtl~~l----~v~~~~~-----~~~~miaPfs~~~~~~~ 203 (234)
T PRK15192 149 QQAYRHLIWSLTP---D----GATVRNPTPYYVTLFLL----RANERAQ-----DNAGVVAPFATRQTDWC 203 (234)
T ss_pred hhhhhheEEEEcC---C----EEEEECCCCcEEEEEeE----EEcCccc-----CCCceECCCCccEEecc
Confidence 1244454211 1 29999999999999765 4577643 13356999999888875
No 32
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.29 E-value=2.1e+02 Score=33.53 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=85.4
Q ss_pred EEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCC-CeEEEEEEEEEehhhHHHHHhccCCCceeeEEEEEEE
Q 018706 109 DVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAH-GEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDL 187 (351)
Q Consensus 109 ~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~-g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~g~l 187 (351)
.+.|.|--+|++-|-++...=++.-. +.--....+..|..+ .+....+.....++ .+ -++-.+
T Consensus 319 sI~~rN~f~f~v~lfnV~L~eE~k~m-fkv~nf~~p~lIlpg~~~~vf~L~~n~~~~-------------~~--~~~s~i 382 (1626)
T KOG3620|consen 319 SIVVRNKFAFPVMLFNVSLTEEIKEM-FKVVNFVGPPLILPGPDESVFLLRLNLLND-------------QV--PFKSFI 382 (1626)
T ss_pred eEEEecccCceeEEeeeccChhhhhh-eEEEeccCCccccCCCCcceeeeeecccCC-------------Cc--ccccce
Confidence 46788888888877776433222221 111222333334333 33333333222221 11 122222
Q ss_pred EEecccccceeeee-eeccccCCCCCCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeE------EEEEECCe
Q 018706 188 IVDVPVFGRLTLPL-EKNGEIPIPYKPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLD------YEVWLSDA 260 (351)
Q Consensus 188 ~vd~pilG~~tiP~-e~sGei~lp~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~------Y~l~lnG~ 260 (351)
.+.+.+ ..+.+|+ ..+|. ..+.++-.-++|+.++++++...+-+ +-|-|+|.+-++.+. |.|+.=++
T Consensus 383 ~l~TNv-s~F~Lpl~~ytGr----l~~s~~~~~~dFg~~s~~~a~~ilf~-~~n~np~e~~~k~w~Vi~r~~l~v~~vav 456 (1626)
T KOG3620|consen 383 RLETNV-SVFKLPLVSYTGR----LHVSTQPIVLDFGQESLEKAAYILFL-DLNTNPFEEMSKDWFVILRNDLPVPVVAV 456 (1626)
T ss_pred EEEecc-eeeecceeeeccc----ccccccccccccchhhhhhccceeee-eecCChHHHhhccceeecccCCcceEEEe
Confidence 233332 3566776 57787 35567777789999999998776654 558888887777543 33333333
Q ss_pred EEEE-------------EEeCCceEEcCCCeEEEEEEEEecc
Q 018706 261 SIGA-------------AELTKSAKIDKNGISYIDIPITFRP 289 (351)
Q Consensus 261 ~ia~-------------G~~~~~~~I~~~g~t~i~Vpvtv~~ 289 (351)
..+. |.. -.+.|+++......|.+++.-
T Consensus 457 n~~~~~s~~~~~E~~~~~~~-~~v~i~~g~~avF~v~l~~~~ 497 (1626)
T KOG3620|consen 457 NWFFKTSYSQSVENDTKGWH-LCVEIRAGESAVFKVALQTYE 497 (1626)
T ss_pred eecccccCcccccccccccc-cceeecccccceeEEEeeccc
Confidence 2111 111 136788888888888888744
No 33
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=40.81 E-value=1.6e+02 Score=22.23 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=39.6
Q ss_pred ceEEEEEEEEECCCCcccccCCeEEEEEE-CCeEEEEEEeCCceEEcCCCeEEEEEEEEecccchHHHHHHhhcCCCeeE
Q 018706 229 ETVAILHLKLENKNDFDLALNSLDYEVWL-SDASIGAAELTKSAKIDKNGISYIDIPITFRPKDFGSALWDMIRGKGTGY 307 (351)
Q Consensus 229 ~t~~~l~l~V~NPN~fpL~i~~l~Y~l~l-nG~~ia~G~~~~~~~I~~~g~t~i~Vpvtv~~~~~~~~l~~l~~~~~i~Y 307 (351)
+..+.+.+.|.|...-+ +.++...+.+ .|=.+..+. .....|+++.+.++.+.|+++... ..-+|
T Consensus 4 G~~~~~~~tv~N~g~~~--~~~v~~~l~~P~GW~~~~~~-~~~~~l~pG~s~~~~~~V~vp~~a-----------~~G~y 69 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAP--LTNVSLSLSLPEGWTVSASP-ASVPSLPPGESVTVTFTVTVPADA-----------APGTY 69 (78)
T ss_dssp TEEEEEEEEEE--SSS---BSS-EEEEE--TTSE---EE-EEE--B-TTSEEEEEEEEEE-TT-------------SEEE
T ss_pred CCEEEEEEEEEECCCCc--eeeEEEEEeCCCCccccCCc-cccccCCCCCEEEEEEEEECCCCC-----------CCceE
Confidence 45678889999988555 4666666665 454421111 122389999999999999985421 23457
Q ss_pred EEEEEEE
Q 018706 308 TMKGHID 314 (351)
Q Consensus 308 ~l~G~l~ 314 (351)
.|...+.
T Consensus 70 ~v~~~a~ 76 (78)
T PF10633_consen 70 TVTVTAR 76 (78)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7777664
No 34
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=40.19 E-value=1.8e+02 Score=22.76 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=53.5
Q ss_pred eeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECC--eEEEEEEeCCceEEcCCCeEEEEEEEEecccchHHH
Q 018706 218 EKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSD--ASIGAAELTKSAKIDKNGISYIDIPITFRPKDFGSA 295 (351)
Q Consensus 218 ~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG--~~ia~G~~~~~~~I~~~g~t~i~Vpvtv~~~~~~~~ 295 (351)
..++|+.+.. +......+.+.|.-..|. .|.+.... ...-+= ....+.|+|+.+..+.|... +.
T Consensus 9 ~~ldFG~v~~-g~~~~~~v~l~N~s~~p~-----~f~v~~~~~~~~~~~v-~~~~g~l~PG~~~~~~V~~~--~~----- 74 (102)
T PF14874_consen 9 KELDFGNVFV-GQTYSRTVTLTNTSSIPA-----RFRVRQPESLSSFFSV-EPPSGFLAPGESVELEVTFS--PT----- 74 (102)
T ss_pred CEEEeeEEcc-CCEEEEEEEEEECCCCCE-----EEEEEeCCcCCCCEEE-ECCCCEECCCCEEEEEEEEE--eC-----
Confidence 4677777764 455678899999887774 45555433 122222 23467899998777666665 11
Q ss_pred HHHhhcCCCeeEEEEEEEEEccCccceEeeee
Q 018706 296 LWDMIRGKGTGYTMKGHIDVDTPFGAMKLPIS 327 (351)
Q Consensus 296 l~~l~~~~~i~Y~l~G~l~vd~pfG~~~iP~s 327 (351)
...-.| ++.+.+....|.+.||+.
T Consensus 75 ------~~~g~~--~~~l~i~~e~~~~~i~v~ 98 (102)
T PF14874_consen 75 ------KPLGDY--EGSLVITTEGGSFEIPVK 98 (102)
T ss_pred ------CCCceE--EEEEEEEECCeEEEEEEE
Confidence 111133 455566666678888875
No 35
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=35.91 E-value=60 Score=37.16 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=39.8
Q ss_pred EEEEECCCCCCeee--eceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEE
Q 018706 109 DVLIKNPNPIPIPL--IDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIP 158 (351)
Q Consensus 109 ~l~V~NPNp~~L~l--~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vp 158 (351)
.+.|.|-+.| ..| -.+.|+|..||+.+.+|... ..++++.+.++++|
T Consensus 639 ~~~i~N~~~F-~~l~~~~~~w~~~~~G~~~~~g~~~--~~~~p~~~~~i~l~ 687 (1027)
T PRK09525 639 TIEVTSEYLF-RHSDNELLHWSVALDGKPLASGEVP--LDLAPQGSQRITLP 687 (1027)
T ss_pred EEEEEEcccC-CcccccEEEEEEEECCEEEEeeeEc--cccCCCCceEEecC
Confidence 7899999987 455 46678999999999999973 58999999999887
No 36
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=35.89 E-value=69 Score=36.65 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=40.3
Q ss_pred EEEEECCCCCCeee--eceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEE
Q 018706 109 DVLIKNPNPIPIPL--IDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPV 159 (351)
Q Consensus 109 ~l~V~NPNp~~L~l--~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv 159 (351)
.+.|.|-+.| ..| -.+.|+|..||+.+.+|... ...|+++++.+|++|+
T Consensus 613 ~~~i~N~~~F-~~l~~~~~~w~l~~dG~~~~~g~~~-~~~i~p~~~~~v~l~~ 663 (1021)
T PRK10340 613 ELKVENKLWF-TNLDDYTLHAEVRAEGETLASGQIK-LRDVAPNSEAPLQITL 663 (1021)
T ss_pred EEEEEECccC-CCccccEEEEEEEECCEEEEEeeec-cCccCCCCceEEEecC
Confidence 6899999887 344 46678888999999999965 5589999999999874
No 37
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=35.13 E-value=2.3e+02 Score=22.54 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=30.6
Q ss_pred eeEEEEEEEEECCCCCCeeeeceEEEEEE---CCEEEEEE-EcCCceeecCCCeEEEEE
Q 018706 103 RADIVIDVLIKNPNPIPIPLIDINYLVES---DGRKLVSG-LIPDSGTIHAHGEETVKI 157 (351)
Q Consensus 103 ~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~---nG~~vasG-~~~~~~~Ipa~g~t~v~v 157 (351)
.-.+.+.+.+.|-...++. +.|.++. +|..+... ..-...+|+++++.++..
T Consensus 23 ~g~~~~~~~l~N~~~~~~~---l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~ 78 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLT---LQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSA 78 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EE---EEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEE
T ss_pred CCeEEEEEEEEECCCCcEE---EEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEE
Confidence 4567788888999988876 6788775 88888665 445567787776666443
No 38
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=35.04 E-value=64 Score=32.76 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=39.1
Q ss_pred ceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEE
Q 018706 214 DIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIG 263 (351)
Q Consensus 214 ~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia 263 (351)
+|.|..|+=-=++..++-|.+.++-.|||=|++.|..++.+|..--..++
T Consensus 332 ~v~v~~I~NVlaS~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 332 DVQVVSIQNVLASEQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred cceEEEeeeeeeccceEEEeeEEEEECCCeEEEEeccceeeeEecCCccC
Confidence 56665555555777888899999999999999999999999876544443
No 39
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=34.05 E-value=72 Score=30.41 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=69.3
Q ss_pred cCCceeecCCCeEEEEEEEEEehhhHHHHHhccCCCceeeEEEEEEEEEecccc--cceeeeeeeccccCCCCCCc-eee
Q 018706 141 IPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVDVPVF--GRLTLPLEKNGEIPIPYKPD-IDL 217 (351)
Q Consensus 141 ~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~g~l~vd~pil--G~~tiP~e~sGei~lp~~P~-v~i 217 (351)
.+-...|.+++...++|--.- . ..++..+.+.-|.+...- +|-- +.-.+-+...-.|+|.|.|. +..
T Consensus 77 tPPlfRl~p~~~~~lRI~~~~-~------~~~LP~DRESlfwlnv~~---IPp~~~~~n~L~iairtrIKLfYRP~~L~~ 146 (250)
T PRK15285 77 VPPVQRIEPSAIGQVKIQGMP-A------LASLPQDRETLFYYNVRE---IPPQSDKPNTLQIALQTRIKVFYRPQALSK 146 (250)
T ss_pred cCCeEEECCCCceEEEEEECC-C------CCCCCCCceEEEEEEEEE---cCCCCCCCcEEEEEeeeeeeEEECcccccC
Confidence 343457777777777665321 0 023455556666666554 2211 11124444455567777775 311
Q ss_pred --------eeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEE
Q 018706 218 --------EKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIP 284 (351)
Q Consensus 218 --------~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vp 284 (351)
.+++|...+. .+.|.||-+|=+.+..+. +.++|..+... +..-|+|+++..+.+|
T Consensus 147 ~~~~~~~~~~l~~~~~g~-------~l~i~NPTPyyvtl~~l~--~~~~~~~~~~~---~~~mi~Pfs~~~~~~~ 209 (250)
T PRK15285 147 IDMQHPWQYKITLQRQGN-------GYQVSNPTGYYVVLSNAS--NRMDGTPARGF---SPLVIAPKSNVTLGGD 209 (250)
T ss_pred ChhhhhhhceEEEEEeCC-------EEEEECCCCcEEEeehee--eccCCeecccC---CCceECCCCccEEEcc
Confidence 1333432111 489999999999998763 33577654211 3456999999998876
No 40
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=31.98 E-value=2e+02 Score=22.38 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=39.9
Q ss_pred CCCCCCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEEEE
Q 018706 208 PIPYKPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIPIT 286 (351)
Q Consensus 208 ~lp~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpvt 286 (351)
++|+-|+|+..-- ...-.+.|.+.|+..-++ .++|+-|.. .+..+...+|+++++..+..++.
T Consensus 4 al~~~~~v~~~~~--------~~~g~l~l~l~N~g~~~~-----~~~v~~~~y---~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 4 ALPYAPEVTARYD--------PATGNLRLTLSNPGSAAV-----TFTVYDNAY---GGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CCCCCCEEEEEEE--------CCCCEEEEEEEeCCCCcE-----EEEEEeCCc---CCCCCEEEEECCCCEEEEEEeec
Confidence 4677787774311 112277888899865544 556665432 22345678999999888888773
No 41
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=31.57 E-value=2.7e+02 Score=22.25 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=42.3
Q ss_pred CCCCeEEEEeEEeccc-------ccceeEEEEEEEEECCCCCCeeeeceEEEEE-ECCEEEEE--EEcCC-----ceeec
Q 018706 84 FGKPTADVTAVHIPKI-------NLERADIVIDVLIKNPNPIPIPLIDINYLVE-SDGRKLVS--GLIPD-----SGTIH 148 (351)
Q Consensus 84 f~~P~Vsv~~v~i~~v-------s~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~-~nG~~vas--G~~~~-----~~~Ip 148 (351)
...=++++.++....- .....-+.+++.|.|...-++.+....|.+. .+|...-. ..... ..+|+
T Consensus 9 ~~~~~vtV~~v~~~~~~~~~~~~~~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~ 88 (123)
T PF11611_consen 9 VGGIEVTVNSVEKTDGSNEYSKPKEGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIK 88 (123)
T ss_dssp ETTEEEEEEEE-EEE-SS-BEES---SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-
T ss_pred ECCEEEEEEEEEeecCCccccccCCCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEEC
Confidence 3566778888843222 2345679999999999999999988888886 45553321 11111 24555
Q ss_pred CCCeEEEEEEEEEe
Q 018706 149 AHGEETVKIPVTLI 162 (351)
Q Consensus 149 a~g~t~v~vpv~l~ 162 (351)
++.+.+-.+-..++
T Consensus 89 pG~~~~g~l~F~vp 102 (123)
T PF11611_consen 89 PGESVTGKLVFEVP 102 (123)
T ss_dssp TT-EEEEEEEEEES
T ss_pred CCCEEEEEEEEEEC
Confidence 55555544444443
No 42
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=29.73 E-value=18 Score=26.82 Aligned_cols=44 Identities=25% Similarity=0.522 Sum_probs=24.1
Q ss_pred EEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEE
Q 018706 110 VLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIP 158 (351)
Q Consensus 110 l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vp 158 (351)
|.|.||-|+=+.+..+ .+..+++ .....+..-|++.++..+.++
T Consensus 1 L~v~NpTPy~vtl~~~--~~~~~~~---~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSL--KLNGGGK---KKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEE--EETHHHC---CEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEee--eeccccc---ccccCCceEECCCCceEEecc
Confidence 6799999999999887 3222222 112222226777777776554
No 43
>PF02019 WIF: WIF domain; InterPro: IPR003306 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. This entry represents the WIF domain, and is found in the RYK tyrosine kinase receptors and WIF the Wnt-inhibitory-factor. The domain is extracellular and contains two conserved cysteines that may form a disulphide bridge. This domain is Wnt binding in WIF, and it has been suggested that RYK may also bind to Wnt [].; GO: 0004713 protein tyrosine kinase activity; PDB: 2YGP_A 2YGO_A 2YGN_A 2D3J_A 2YGQ_A.
Probab=29.06 E-value=1.6e+02 Score=25.44 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=36.5
Q ss_pred CceeeEEEEEEEEEecccccceeeeeeeccccCCCCCCceeeeeeeEEeecccceEEEEEEEEECCCC
Q 018706 176 GMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYKPDIDLEKIKFERFSFEETVAILHLKLENKND 243 (351)
Q Consensus 176 ~e~i~Y~l~g~l~vd~pilG~~tiP~e~sGei~lp~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~ 243 (351)
+....|.+..-..-|..++...++.++.+|++|. .|+.=-....=.+-.-.++.+.++|.++++..
T Consensus 53 ~~~~~Y~~~~l~s~d~~~l~~P~lnIs~~G~VP~--~~~~F~V~L~CtG~~~g~a~v~i~lni~~~~~ 118 (132)
T PF02019_consen 53 KKPYPYNFDVLKSSDPSILPHPSLNISKSGEVPH--SPQVFSVELPCTGKRSGEATVTIQLNITLPSS 118 (132)
T ss_dssp SS-EEEEEEEEEES-TTTBB--EESS-SEEEE-S--S-EEEEEE--B-SSS-EEEEEEEEEEEEETT-
T ss_pred CceEEEEEEEEEccCcccccCCccccCCCeeccC--CCEEEEEEEEecCccceEEEEEEEEEEEeCCC
Confidence 5578888888555577777778888899998755 55432112222222235678888888887764
No 44
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=29.01 E-value=4.8e+02 Score=24.28 Aligned_cols=150 Identities=12% Similarity=0.128 Sum_probs=80.9
Q ss_pred EEEEEEECCCCCCeeeeceEEEEEECCEE--EEEEEcCCceeecCCCeEEEEEEEEEehhhHHHHHhccCCCceeeEEEE
Q 018706 107 VIDVLIKNPNPIPIPLIDINYLVESDGRK--LVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIK 184 (351)
Q Consensus 107 ~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~--vasG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~ 184 (351)
...+.|.|....|+-+..- +.-++.. --=-..+-...|+++.+..+++--. ..+..+.+.-|++.
T Consensus 41 ~~si~v~N~~~~p~lvQ~w---v~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~----------~~lp~drEs~f~l~ 107 (230)
T PRK09918 41 EGSINVKNTDSNPILLYTT---LVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILK----------SGSPLNTEHLLRVS 107 (230)
T ss_pred eEEEEEEcCCCCcEEEEEE---EecCCCCCCCCEEEcCCeEEECCCCceEEEEEEC----------CCCCCCeeEEEEEE
Confidence 3456778988777665221 1111111 0012344456788888877655421 11344667777777
Q ss_pred EEEEEecccc--cceeeeeeeccccCCCCCCc-ee-----eeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEE
Q 018706 185 VDLIVDVPVF--GRLTLPLEKNGEIPIPYKPD-ID-----LEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVW 256 (351)
Q Consensus 185 g~l~vd~pil--G~~tiP~e~sGei~lp~~P~-v~-----i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~ 256 (351)
..- +|-- +.-.+-+...-.+++.|.|. +. ..+++|..- + -.|.|.||-++=+.|.++.. +.
T Consensus 108 v~~---IP~~~~~~~~l~ia~r~~iklfyRP~~l~~~~~~~~~l~~~~~---~----~~l~v~N~~p~~i~l~~l~~-~~ 176 (230)
T PRK09918 108 FEG---VPPKPGGKNKVVMPIRQDLPVLIQPAALPVVRDPWKLLVWSIS---G----NNLVVSNPSPYVVRLGQQVI-LL 176 (230)
T ss_pred EEE---cCCCCCCCCEEEEEEEeEEEEEEeCCCCCCcccchhccEEEEe---C----CEEEEECCCCEEEEEeccEE-Ec
Confidence 654 2311 01123333334456656554 11 123445421 1 24899999999999988532 22
Q ss_pred ECCeEEEEEEeCCceEEcCCCeEEEEEE
Q 018706 257 LSDASIGAAELTKSAKIDKNGISYIDIP 284 (351)
Q Consensus 257 lnG~~ia~G~~~~~~~I~~~g~t~i~Vp 284 (351)
.+|..+.- ...-|.|+++..+.+|
T Consensus 177 ~~g~~~~~----~~~~v~P~s~~~~~l~ 200 (230)
T PRK09918 177 PSGKVVAL----PKPYILPGESLTVAIT 200 (230)
T ss_pred cCCceecc----CCceECCCceEEEEcc
Confidence 36665422 1245889999988876
No 45
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.33 E-value=96 Score=29.13 Aligned_cols=45 Identities=27% Similarity=0.475 Sum_probs=32.1
Q ss_pred EEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEE
Q 018706 108 IDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIP 158 (351)
Q Consensus 108 v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vp 158 (351)
-.+.|.||-|+=+.+.++ .+..+|+++. ....-|++.++.++.++
T Consensus 165 ~~l~v~Nptpy~vtl~~~--~l~~~~~~~~----~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANL--TLNVGGRKLG----LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEE--EEeeCceecC----CCcceECCCccceeecC
Confidence 468899999999999988 5566888876 22345555666655554
No 46
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=27.94 E-value=81 Score=30.06 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=33.1
Q ss_pred EEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEE
Q 018706 109 DVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIP 158 (351)
Q Consensus 109 ~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vp 158 (351)
.+.|.||-|+=+.+..+ .+.++|..+.. .+..-|++.++.++.++
T Consensus 165 ~l~i~NPTPyyvtl~~l--~~~~~~~~~~~---~~~~mi~Pfs~~~~~~~ 209 (250)
T PRK15285 165 GYQVSNPTGYYVVLSNA--SNRMDGTPARG---FSPLVIAPKSNVTLGGD 209 (250)
T ss_pred EEEEECCCCcEEEeehe--eeccCCeeccc---CCCceECCCCccEEEcc
Confidence 38899999999999887 55577765421 13456888998887765
No 47
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=27.44 E-value=3.9e+02 Score=24.07 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=18.9
Q ss_pred EEeecccceEEEEEEEEECCCCcccccCCeEEEEEE
Q 018706 222 FERFSFEETVAILHLKLENKNDFDLALNSLDYEVWL 257 (351)
Q Consensus 222 ~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~l 257 (351)
+..++.+.---.++|+|.|++.-||| ++++.+.-
T Consensus 68 l~~I~~~AnGs~a~L~i~~~~~~pLp--af~~~veW 101 (165)
T PF11622_consen 68 LSNIEPEANGSRATLRIQNLSSAPLP--AFSATVEW 101 (165)
T ss_dssp EEEEEE-SSSEEEEEEEEESSSS------EEEEEEE
T ss_pred EecccccCCccEEEEEEeCCCCCccc--CceeEEEE
Confidence 33334434445667788888888777 88888764
No 48
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=27.09 E-value=3.6e+02 Score=22.29 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=46.9
Q ss_pred CCCCeEEEEeEEecccccceeEEEEEEEEECCCCCCeeeeceEEEEEECCEEEEEEEcCCceeecCCCeEEEEEEEEEeh
Q 018706 84 FGKPTADVTAVHIPKINLERADIVIDVLIKNPNPIPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIY 163 (351)
Q Consensus 84 f~~P~Vsv~~v~i~~vs~~~~~l~v~l~V~NPNp~~L~l~~i~Y~l~~nG~~vasG~~~~~~~Ipa~g~t~v~vpv~l~~ 163 (351)
+..|.++...+.+.-++..++++.+ .|.-| | +.+..=+--.+.-++.+++.-+ ..|||.+..++.+.+.+..
T Consensus 29 ~~~~~v~~~~~gf~vv~d~~v~v~f--~Vtr~-~-~~~a~C~VrA~~~d~aeVGrre----V~vp~~~~~~~~~~v~v~T 100 (112)
T PF14155_consen 29 FGSPPVSAEVIGFEVVDDSTVEVTF--DVTRD-P-GRPAVCIVRALDYDGAEVGRRE----VLVPPSGERTVRVTVTVRT 100 (112)
T ss_pred ccCCCceEEEEEEEECCCCEEEEEE--EEEEC-C-CCCEEEEEEEEeCCCCEEEEEE----EEECCCCCcEEEEEEEEEe
Confidence 4678888888888888887555554 45545 3 3333222223344576775544 6689988888888887764
Q ss_pred h
Q 018706 164 D 164 (351)
Q Consensus 164 ~ 164 (351)
.
T Consensus 101 t 101 (112)
T PF14155_consen 101 T 101 (112)
T ss_pred c
Confidence 3
No 49
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=26.95 E-value=4.5e+02 Score=26.78 Aligned_cols=192 Identities=16% Similarity=0.250 Sum_probs=106.3
Q ss_pred eceEEEEEECCE-EEEEEEcCCc---eee-------cCCCeEEEEEEEEEehhhHHHHHhccCCCceeeEEEEEEEEEe-
Q 018706 123 IDINYLVESDGR-KLVSGLIPDS---GTI-------HAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVD- 190 (351)
Q Consensus 123 ~~i~Y~l~~nG~-~vasG~~~~~---~~I-------pa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~g~l~vd- 190 (351)
..+...+-++++ .+..|..+.. ..+ +..+.-.+.+++.++|..+-+++..--.+++.+..-..++++.
T Consensus 210 ~~l~~~~gl~a~~~~~~g~~P~~~~~~pLP~l~~~~~~~~~~~i~l~~~i~y~~i~~~l~~~l~gk~f~~~~~~~v~v~~ 289 (427)
T PF14356_consen 210 NALTLTLGLKARTRTVVGPKPACVPPTPLPPLKSLPAIPGGFRINLPADIPYAEINKLLTKQLAGKTFSFSGGKKVTVKS 289 (427)
T ss_pred CeEEEEEEEEEEEEEEcCCCCCCCCCCCCCCccccCCCCCcEEEEEEEEcCHHHHHHHHHHHHcCCccccCCCceEEEEE
Confidence 445555555554 4445554421 122 2345678999999999999999944335555442111111111
Q ss_pred cccc---cceeeeeeeccccCCCCCCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEe
Q 018706 191 VPVF---GRLTLPLEKNGEIPIPYKPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAEL 267 (351)
Q Consensus 191 ~pil---G~~tiP~e~sGei~lp~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~ 267 (351)
+-++ +++.|-++.+|. .+++-+...-=++||..--|.|.+++|++...+..+..+..
T Consensus 290 v~v~g~~~rl~i~~~~~g~--------------------~~G~i~l~G~P~yD~~~~~l~l~dld~~~~t~~~l~~~a~w 349 (427)
T PF14356_consen 290 VSVYGSGDRLVIALDVTGS--------------------LNGTIYLSGRPVYDPATQTLRLEDLDFDLDTKNFLLKTAAW 349 (427)
T ss_pred EEEEecCCcEEEEEEEEEE--------------------EEEEEEEEEEEEECCCCCEEEEEeeEEEecccchHHHHHHH
Confidence 1111 123333333332 44555555566899999999999999999999864444332
Q ss_pred CCceEEcCCCeEEEEEEEEecccchHHHHHHhhcC-C-CeeEEEEEEEEEccC----c--cceEeeeecccceee
Q 018706 268 TKSAKIDKNGISYIDIPITFRPKDFGSALWDMIRG-K-GTGYTMKGHIDVDTP----F--GAMKLPISKEGGTTR 334 (351)
Q Consensus 268 ~~~~~I~~~g~t~i~Vpvtv~~~~~~~~l~~l~~~-~-~i~Y~l~G~l~vd~p----f--G~~~iP~s~~G~~~~ 334 (351)
--...|-..=.+...+|+.=....+...+...+++ + .=..+++|.+.-=.+ + -.+.+.+.-+|+.+.
T Consensus 350 l~~~~i~~~i~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~gv~l~g~~~~l~~~~i~~~~~~l~~~~~a~G~~~v 424 (427)
T PF14356_consen 350 LLHGRIRKAIEEKLVFDLGPQLEEAKKKINAALANYKPAPGVRLNGKVDSLRLDDIQVTPDGLVVQVNAEGTLTV 424 (427)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEceeEEeeEEEcCCEEEEEEEEeeEEEE
Confidence 22233333334555666665556666666666655 2 345566666531111 2 255566666666543
No 50
>smart00469 WIF Wnt-inhibitory factor-1 like domain. Occurs as extracellular domain in metazoan Ryk receptor tyrosine kinases. C. elegans Ryk is required for cell-cuticle recognition. WIF-1 binds to Wnt and inhibits its activity.
Probab=26.86 E-value=2.4e+02 Score=24.56 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=33.9
Q ss_pred CceeeEEEEEEEEEecccccceeeeeeeccccCCCCCC-ceeeeeeeEEeecccceEEEEEEEEE
Q 018706 176 GMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYKP-DIDLEKIKFERFSFEETVAILHLKLE 239 (351)
Q Consensus 176 ~e~i~Y~l~g~l~vd~pilG~~tiP~e~sGei~lp~~P-~v~i~~v~~~~vs~~~t~~~l~l~V~ 239 (351)
.+.++|.+...- .|..+++...+.+..+|++| ..+ ++.+.=.=.++.+ .++.+.+.++
T Consensus 56 ~~~~~y~~~l~s-~D~~vl~~P~lnI~~~G~VP--~~~~~f~V~l~CsG~~s---a~~~V~l~l~ 114 (136)
T smart00469 56 QEYVPYSLNVRS-DDKEVLPRPIVNISLLGTVP--HTLQVFQVELKCSGKRD---AEVEVTVIVE 114 (136)
T ss_pred CeeeeeEEEEEe-CCHHHcCCCcccccccccCC--CCcEEEEEEEEecCCcc---eEEEEEEEEE
Confidence 367899986665 45657777788888999764 444 3443333334444 4444444433
No 51
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=26.65 E-value=2.3e+02 Score=21.27 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=30.1
Q ss_pred eEEEEEEEEECCCCCCeeeeceEEEEEE-CCEEEEEEEcCCceeecCCCeEEEEEEEEEehh
Q 018706 104 ADIVIDVLIKNPNPIPIPLIDINYLVES-DGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYD 164 (351)
Q Consensus 104 ~~l~v~l~V~NPNp~~L~l~~i~Y~l~~-nG~~vasG~~~~~~~Ipa~g~t~v~vpv~l~~~ 164 (351)
.++.+.+.|.|...-++ .++...+.. .|=.+..+. .....|+++.+.++.+.++++-+
T Consensus 5 ~~~~~~~tv~N~g~~~~--~~v~~~l~~P~GW~~~~~~-~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPL--TNVSLSLSLPEGWTVSASP-ASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-B--SS-EEEEE--TTSE---EE-EEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCce--eeEEEEEeCCCCccccCCc-cccccCCCCCEEEEEEEEECCCC
Confidence 46778899999886554 555445543 443321111 11237888888888888888755
No 52
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=26.36 E-value=5.6e+02 Score=24.19 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=81.7
Q ss_pred EEEEEEECCCC-CCeeeeceEEEEEECCEEE-EEEEcCCceeecCCCeEEEEEEEEEehhhHHHHHhccCCCceeeEEEE
Q 018706 107 VIDVLIKNPNP-IPIPLIDINYLVESDGRKL-VSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIK 184 (351)
Q Consensus 107 ~v~l~V~NPNp-~~L~l~~i~Y~l~~nG~~v-asG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~ 184 (351)
...+.|.|... .|.-+.. |-=.-++.+- -=-..+-...|.+++...++|--.-.. -..+..+.+.-|.+.
T Consensus 33 ~~sv~v~N~~~~~p~LvQs--Wv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~------~~~lP~DRESlf~ln 104 (239)
T PRK15254 33 TVAITLNNDDKTTPFLAQS--WVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGL------TDKLPQDRETLFWFN 104 (239)
T ss_pred eEEEEEEeCCCCCcEEEEE--EEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccC------CCCCCCCceEEEEEE
Confidence 45677888764 4555542 1111122210 112344456788888888776532000 023455666667766
Q ss_pred EEEEEecccc--cceeeeeeeccccCCCCCCc-eee--eeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECC
Q 018706 185 VDLIVDVPVF--GRLTLPLEKNGEIPIPYKPD-IDL--EKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSD 259 (351)
Q Consensus 185 g~l~vd~pil--G~~tiP~e~sGei~lp~~P~-v~i--~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG 259 (351)
..- +|-- ..-.+-+...-.|+|.|.|. +.. .+..++++.+... .-.++|.||-+|=+.+..+. ++|
T Consensus 105 v~~---IP~~~~~~n~L~iair~~iKLFyRP~~L~~~~~~~~~~~L~~~~~--g~~l~v~NpTPYyitl~~l~----~~~ 175 (239)
T PRK15254 105 VRG---VPPKPEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERN--AGHLTLRNPTPYYITVAWLG----ADR 175 (239)
T ss_pred EEE---cCCCCCCCceEEEEEEeEEeEEEccccccCCcccchhhceEEEEe--CCEEEEECCCceEEEeeeEE----ecC
Confidence 654 2210 01123333445567767765 211 1112233333211 11499999999999997654 466
Q ss_pred e-EEEEEEeCCceEEcCCCeEEEEEE
Q 018706 260 A-SIGAAELTKSAKIDKNGISYIDIP 284 (351)
Q Consensus 260 ~-~ia~G~~~~~~~I~~~g~t~i~Vp 284 (351)
. .+.. ..+..-|+|.++..+.++
T Consensus 176 ~~~~~~--~~~~~mi~Pfs~~~~~~~ 199 (239)
T PRK15254 176 SHRLSG--FREGVMVPPLGSLPLKAV 199 (239)
T ss_pred cccccc--cCCCceECCCCceEEecc
Confidence 3 3321 123456999999888764
No 53
>PRK10899 hypothetical protein; Provisional
Probab=25.30 E-value=5.3e+02 Score=29.65 Aligned_cols=69 Identities=10% Similarity=0.184 Sum_probs=38.9
Q ss_pred cccCCeEEEEEECCe-EEEEEEeCCceEEcCCCeEEEEEE--EEecccchHHH-H-HHhhcCC-----CeeEEEEEEEE
Q 018706 246 LALNSLDYEVWLSDA-SIGAAELTKSAKIDKNGISYIDIP--ITFRPKDFGSA-L-WDMIRGK-----GTGYTMKGHID 314 (351)
Q Consensus 246 L~i~~l~Y~l~lnG~-~ia~G~~~~~~~I~~~g~t~i~Vp--vtv~~~~~~~~-l-~~l~~~~-----~i~Y~l~G~l~ 314 (351)
+.+.+.+-++.+.|. .+..-+.+....+-+.=+..+.+- +-++|-.-+.+ + -+++... .+.|+|+|..+
T Consensus 927 l~m~G~aa~v~~~G~~DL~~et~d~~v~V~P~ls~~lpv~~a~a~~P~vG~a~f~a~kvL~~~~~kiss~~Y~VtG~w~ 1005 (1022)
T PRK10899 927 LLVDGLEADIAMKGSVDLVRRQINMEAVVAPEISATVGVATAFAVNPIVGAAVFAASKVLGPLWSKISIIRYHISGPLD 1005 (1022)
T ss_pred eEEEccceeEEEeeecccChhhcccEEEEeccccCchHHHHhhhhCcHHHHHHHHHHHHhchhhhhhEEEEEEEEccCc
Confidence 677788888888776 566666655555555444443331 12233221111 2 2344442 69999999885
No 54
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=24.52 E-value=4e+02 Score=21.97 Aligned_cols=79 Identities=9% Similarity=-0.010 Sum_probs=48.8
Q ss_pred chhHHHHHHHHhhhhhhhcccCCCCCeEEEE--eEEecccccceeEEEEEEEEECCCCC--CeeeeceEEEEEECCEEEE
Q 018706 62 GFIEKVKDFIHDIGEKIEETIGFGKPTADVT--AVHIPKINLERADIVIDVLIKNPNPI--PIPLIDINYLVESDGRKLV 137 (351)
Q Consensus 62 ~~~~~~~~~~~~~~~k~~~~~~f~~P~Vsv~--~v~i~~vs~~~~~l~v~l~V~NPNp~--~L~l~~i~Y~l~~nG~~va 137 (351)
-++|-+.++...++..-.+++.=. .+-+. +++|...-.......+.+.+..+... ...=..+..+++.+|+.++
T Consensus 47 ll~Ea~RQa~~~~~h~~~~vp~~~--~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q~g~~~a 124 (132)
T PF03756_consen 47 LLLEAARQAGIALAHRFYGVPLDH--QFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQGGRVVA 124 (132)
T ss_pred HHHHHHHHHHHHhhccccCCCCCc--eEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEECCEEEE
Confidence 489999999987777665443211 13333 34444444333466666666666654 2223456677888999999
Q ss_pred EEEcC
Q 018706 138 SGLIP 142 (351)
Q Consensus 138 sG~~~ 142 (351)
++...
T Consensus 125 ~~~~~ 129 (132)
T PF03756_consen 125 TASMT 129 (132)
T ss_pred EEEEE
Confidence 98754
No 55
>PF12371 DUF3651: Protein of unknown function (DUF3651); InterPro: IPR022113 This domain family is found in eukaryotes, and is approximately 70 amino acids in length. This family is frequently annotated as a membrane protein but there is little associated literature to back this up.
Probab=23.50 E-value=1.6e+02 Score=22.32 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=35.8
Q ss_pred EEEEEEEEEecccccceeeeeeeccccCCCCC-CceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCe
Q 018706 181 YKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYK-PDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSL 251 (351)
Q Consensus 181 Y~l~g~l~vd~pilG~~tiP~e~sGei~lp~~-P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l 251 (351)
+.+++.+.+-+. .|.+.+++.-.|. +.||. |.+.-..+ .-..++.-.+.+.||++.++.+..+
T Consensus 10 g~~~~~l~i~T~-~g~~~~~v~g~~~-~~py~L~p~~~~~i------~~~~t~~~~i~~~Np~~~~l~v~ei 73 (73)
T PF12371_consen 10 GSIESSLFIHTS-SGPFSYQVFGEGV-ESPYRLPPLVGGRI------PLNTTFSPLISLFNPHSQPLQVDEI 73 (73)
T ss_pred cccccEEEEEEc-cCcEEEEEEeccc-CCccccCcccCceE------ecCccccccEEEECCCCcceEeeeC
Confidence 344555555554 3677777644442 33432 22211111 2356677789999999999887653
No 56
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=23.10 E-value=2.2e+02 Score=27.56 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhhhhhhcccCCCCCeEEEEeEEecccccceeEEEEEEEEECCC
Q 018706 64 IEKVKDFIHDIGEKIEETIGFGKPTADVTAVHIPKINLERADIVIDVLIKNPN 116 (351)
Q Consensus 64 ~~~~~~~~~~~~~k~~~~~~f~~P~Vsv~~v~i~~vs~~~~~l~v~l~V~NPN 116 (351)
+++|+.-+++++++..++..-++|.|.+ .+.+...+.+.+.+.+.+++
T Consensus 198 ~~~~~~il~~~~~~~~~vl~~p~p~v~~-----~~~~dssi~~~v~~wv~~~~ 245 (286)
T PRK10334 198 IDQVKQILTNIIQSEDRILKDREMTVRL-----NELGASSINFVVRVWSNSGD 245 (286)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCEEEE-----EeeeCceEEEEEEEEEecch
Confidence 6789999999999987776555666554 46677888999999998875
No 57
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=22.19 E-value=4.1e+02 Score=21.17 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=36.8
Q ss_pred ccceEEEEEEEEECCCCcccccCCeEEEEE-ECCeEEEE--EEeC-----CceEEcCCCeEEEEEEEEec
Q 018706 227 FEETVAILHLKLENKNDFDLALNSLDYEVW-LSDASIGA--AELT-----KSAKIDKNGISYIDIPITFR 288 (351)
Q Consensus 227 ~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~-lnG~~ia~--G~~~-----~~~~I~~~g~t~i~Vpvtv~ 288 (351)
....-+.++++|.|...-++.+....+.|. -+|...-. .... ....|+|+.+.+-.+-..++
T Consensus 33 ~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp 102 (123)
T PF11611_consen 33 EGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVP 102 (123)
T ss_dssp --SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEES
T ss_pred CCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEEC
Confidence 445679999999999999999988889887 45554432 1111 23678888777666666663
No 58
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=22.00 E-value=1.4e+02 Score=28.12 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCCCCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEE
Q 018706 209 IPYKPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIP 284 (351)
Q Consensus 209 lp~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vp 284 (351)
++..|+-...+++|......+. ..|+|.||-++=+.|..+...+ +|..+.. +..-|+|+++..+.++
T Consensus 151 l~~~~~~~~~~L~~~~~~~~~~---~~L~v~Nptpy~itl~~l~~~~--~g~~~~~----~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 151 LKGNPSEAPLALKWSWAGSEGK---ASLRVTNPTPYYVSFSSGDLEA--GGKRYPV----DSKMIAPFSDESMKVK 217 (246)
T ss_pred CCCChhHhhhccEEEEecCCCe---EEEEEECCCceEEEEEeeeeec--CCeeccc----CcceECCCCcceEecC
No 59
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=21.86 E-value=1.6e+02 Score=25.94 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=23.3
Q ss_pred eeeccccCC---CCCCceeeeeeeEEeecccceEEEEEEEEECCCCcccccCC--eEEEEEE
Q 018706 201 LEKNGEIPI---PYKPDIDLEKIKFERFSFEETVAILHLKLENKNDFDLALNS--LDYEVWL 257 (351)
Q Consensus 201 ~e~sGei~l---p~~P~v~i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i~~--l~Y~l~l 257 (351)
+.+.|.+.+ |+...+.-+.++|..-......+.+.+ +-|..|++|++ +.+.+.+
T Consensus 3 i~K~~~i~~~~~~~~~~~~~~~I~f~~~D~nta~l~~~I---~~ng~pldLs~~~v~~~l~l 61 (170)
T PF10651_consen 3 IYKIGEIELNINAQYKPIGNTGIRFYQGDKNTAKLRFNI---TKNGQPLDLSGANVTFKLVL 61 (170)
T ss_dssp --------------STS---S-EEEESS-SSTEEEEEEE---EETTEE---TTSEEEEEEE-
T ss_pred ccccccccccccccCCCccccceEEEECCCCeEEEEEEE---EECCEEEECCCCeEEEEEEE
Confidence 445565555 333445556777776666667666666 35788888888 5777765
No 60
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=21.81 E-value=1.3e+02 Score=28.52 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=82.6
Q ss_pred EEEEEECCCCCCeeeeceEEEEE-ECCEE-EEEEEcCCceeecCCCeEEEEEEEEEehhhHHHHHhccCCCceeeEEEEE
Q 018706 108 IDVLIKNPNPIPIPLIDINYLVE-SDGRK-LVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKV 185 (351)
Q Consensus 108 v~l~V~NPNp~~L~l~~i~Y~l~-~nG~~-vasG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l~~l~~~e~i~Y~l~g 185 (351)
+.+.|.|....|.=+..- |+ .++.. .-=-..+-...+.+++..+++|--. - ..|..+.+.-|.+..
T Consensus 46 ~sl~v~N~~~~pyLvQsW---vd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~--~-------~~LP~DRESlFwlnv 113 (237)
T PRK15224 46 ATLSVSNPQNYPILVQSS---VKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT--G-------GDMPTDRETLQWVCI 113 (237)
T ss_pred EEEEEEcCCCCcEEEEEE---EeCCCCCccCCEEECCCeEEECCCCceEEEEEEC--C-------CCCCCceeEEEEEEE
Confidence 467789988776443221 11 12211 0012234345777888888776632 1 234566666777766
Q ss_pred EEEEecccccc----------eeeeeeeccccCCCCCCc-ee------eeeeeEEeecccceEEEEEEEEECCCCccccc
Q 018706 186 DLIVDVPVFGR----------LTLPLEKNGEIPIPYKPD-ID------LEKIKFERFSFEETVAILHLKLENKNDFDLAL 248 (351)
Q Consensus 186 ~l~vd~pilG~----------~tiP~e~sGei~lp~~P~-v~------i~~v~~~~vs~~~t~~~l~l~V~NPN~fpL~i 248 (351)
.. +|--.. ..+-+...-.|+|.|.|. +. ..+++|..- +- .|+|.||-+|=+.|
T Consensus 114 ~~---IPp~~~~~~~~~~~~~~~LqiairtrIKLFYRP~~L~~~~~~a~~~L~~~~~---g~----~l~v~NpTPYyvtl 183 (237)
T PRK15224 114 KA---VPPENEPSDTQAKGATLDLNLSINVCDKLIFRPDAVKGTPEDVAGNLRWVET---GN----KLKVENPTPFYMNL 183 (237)
T ss_pred EE---cCCCCcccccccccccceEEEEeheeeeEEEchhhcCCChhHhhhccEEEEc---CC----EEEEECCCCcEEEe
Confidence 55 221000 024444445566767664 22 235555531 11 39999999999999
Q ss_pred CCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEE
Q 018706 249 NSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIP 284 (351)
Q Consensus 249 ~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vp 284 (351)
.++ .++|..+. ...-|+|.++..+.+|
T Consensus 184 ~~l----~~~~~~~~-----~~~miaPfs~~~~~~~ 210 (237)
T PRK15224 184 ASV----TVGGKPIT-----GLEYIPPFADKTLNMP 210 (237)
T ss_pred EeE----EECCcccC-----CceeECCCCccEEEcC
Confidence 765 46888652 1245999999888766
No 61
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=21.31 E-value=80 Score=28.06 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=35.6
Q ss_pred CCCcccccCCeEEEEEECCeEEEEEEeCCceEEcCCCeEEEEEEEEecccchHHHHHHhhcCC
Q 018706 241 KNDFDLALNSLDYEVWLSDASIGAAELTKSAKIDKNGISYIDIPITFRPKDFGSALWDMIRGK 303 (351)
Q Consensus 241 PN~fpL~i~~l~Y~l~lnG~~ia~G~~~~~~~I~~~g~t~i~Vpvtv~~~~~~~~l~~l~~~~ 303 (351)
|-.+||++++++-++..... . .+.-...+...+.|-++...-....-..-.+|||++.-
T Consensus 74 PlCHpi~lt~Vdv~~~~~~~---~-~v~i~~~vkt~gkTGVEMEALtavsvalLTIyDM~Ka~ 132 (157)
T COG0315 74 PLCHPLPLTKVDVDFEVDED---D-GVEITATVKTTGKTGVEMEALTAVSVALLTIYDMCKAV 132 (157)
T ss_pred ccCCCCcccceEEEEEECCC---C-cEEEEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999988664 0 01112345555666555444332223333479998654
No 62
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=20.80 E-value=4.5e+02 Score=21.12 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=42.2
Q ss_pred EEEEEEEECCCCCCeee--ece-EEEEE---ECCEEE---------EEEEcCCceeecCCCeEEEEEEEEEehhhHHHHH
Q 018706 106 IVIDVLIKNPNPIPIPL--IDI-NYLVE---SDGRKL---------VSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAY 170 (351)
Q Consensus 106 l~v~l~V~NPNp~~L~l--~~i-~Y~l~---~nG~~v---------asG~~~~~~~Ipa~g~t~v~vpv~l~~~~L~~~l 170 (351)
....+.|+|...-++.. ... .++.. -+|... .....++.++|||+++.++.+.+.++-. +..
T Consensus 10 ~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~-~~~-- 86 (112)
T PF06280_consen 10 FSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSG-LDA-- 86 (112)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GG-GHH--
T ss_pred eEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhc-CCc--
Confidence 56667777777765552 333 22222 233332 3344566789999999998888887542 211
Q ss_pred hccCCCceeeEEEEEEEEEeccccc--ceeeee
Q 018706 171 DDIKPGMIIPYKIKVDLIVDVPVFG--RLTLPL 201 (351)
Q Consensus 171 ~~l~~~e~i~Y~l~g~l~vd~pilG--~~tiP~ 201 (351)
...+-+.|.+.+.--- + .++||+
T Consensus 87 -------~~~~~~eG~I~~~~~~-~~~~lsIPy 111 (112)
T PF06280_consen 87 -------SNGPFYEGFITFKSSD-GEPDLSIPY 111 (112)
T ss_dssp -------TT-EEEEEEEEEESST-TSEEEEEEE
T ss_pred -------ccCCEEEEEEEEEcCC-CCEEEEeee
Confidence 2234456777665432 2 255554
Done!