Query 018707
Match_columns 351
No_of_seqs 249 out of 1656
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 5.1E-74 1.1E-78 519.1 21.2 278 24-330 84-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 6.9E-68 1.5E-72 501.1 28.7 277 26-330 53-339 (348)
3 KOG1543 Cysteine proteinase Ca 100.0 1.5E-66 3.3E-71 488.7 26.4 276 27-332 42-324 (325)
4 PTZ00021 falcipain-2; Provisio 100.0 3.4E-66 7.4E-71 503.2 28.1 297 4-330 156-487 (489)
5 PTZ00200 cysteine proteinase; 100.0 2.6E-64 5.7E-69 488.6 26.5 272 26-330 141-444 (448)
6 cd02620 Peptidase_C1A_Cathepsi 100.0 2.9E-61 6.2E-66 436.8 24.3 228 96-329 1-236 (236)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 1.8E-60 3.8E-65 433.9 23.1 223 95-332 1-243 (243)
8 cd02698 Peptidase_C1A_Cathepsi 100.0 9.3E-60 2E-64 427.7 24.2 224 95-332 1-239 (239)
9 PTZ00049 cathepsin C-like prot 100.0 5.1E-57 1.1E-61 447.7 24.9 241 92-335 378-680 (693)
10 cd02248 Peptidase_C1A Peptidas 100.0 6.7E-57 1.5E-61 401.6 22.3 205 96-327 1-208 (210)
11 PTZ00364 dipeptidyl-peptidase 100.0 6.3E-56 1.4E-60 436.0 23.0 225 92-331 202-459 (548)
12 PF00112 Peptidase_C1: Papain 100.0 8.7E-55 1.9E-59 389.6 19.5 212 95-330 1-219 (219)
13 KOG1544 Predicted cysteine pro 100.0 5.6E-54 1.2E-58 383.6 7.0 299 27-331 140-460 (470)
14 smart00645 Pept_C1 Papain fami 100.0 5.8E-50 1.3E-54 346.3 17.9 168 95-327 1-171 (174)
15 cd02619 Peptidase_C1 C1 Peptid 100.0 9.4E-47 2E-51 338.3 20.8 197 98-317 1-213 (223)
16 PTZ00462 Serine-repeat antigen 100.0 8.6E-47 1.9E-51 384.5 23.1 231 105-341 538-791 (1004)
17 COG4870 Cysteine protease [Pos 100.0 2.3E-30 5E-35 237.8 7.9 206 92-321 96-318 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 2.1E-24 4.5E-29 208.7 14.4 204 111-316 54-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.7 2.7E-16 5.9E-21 152.5 13.0 205 111-316 55-400 (438)
20 COG3579 PepC Aminopeptidase C 98.9 1.1E-08 2.4E-13 93.7 10.7 79 235-314 296-400 (444)
21 PF08246 Inhibitor_I29: Cathep 98.0 5.2E-06 1.1E-10 58.1 3.4 42 25-67 15-58 (58)
22 PF08127 Propeptide_C1: Peptid 97.7 3.6E-05 7.9E-10 49.5 3.3 39 36-77 2-40 (41)
23 KOG4128 Bleomycin hydrolases a 97.6 6.9E-05 1.5E-09 69.0 4.1 79 111-189 62-169 (457)
24 smart00848 Inhibitor_I29 Cathe 97.3 0.00011 2.3E-09 51.0 1.4 40 26-66 16-57 (57)
25 PF05543 Peptidase_C47: Stapho 96.9 0.015 3.3E-07 49.4 10.8 121 116-304 18-147 (175)
26 PF13529 Peptidase_C39_2: Pept 96.9 0.013 2.8E-07 47.7 10.5 58 234-301 87-144 (144)
27 COG4990 Uncharacterized protei 89.6 0.78 1.7E-05 39.2 5.2 49 233-302 120-168 (195)
28 PF09778 Guanylate_cyc_2: Guan 89.5 1.3 2.8E-05 39.2 6.7 62 234-299 111-180 (212)
29 PF14399 Transpep_BrtH: NlpC/p 89.3 0.98 2.1E-05 42.4 6.5 66 236-315 78-143 (317)
30 PF12385 Peptidase_C70: Papain 84.7 20 0.00044 30.2 10.8 37 235-286 97-133 (166)
31 cd02549 Peptidase_C39A A sub-f 72.5 12 0.00026 30.1 6.1 45 239-301 70-114 (141)
32 cd00044 CysPc Calpains, domain 69.9 10 0.00023 35.7 5.8 28 275-303 234-263 (315)
33 PF11337 DUF3139: Protein of u 54.1 11 0.00025 28.1 2.4 17 1-17 1-17 (85)
34 PF10855 DUF2648: Protein of u 53.7 18 0.0004 21.6 2.6 21 1-23 1-21 (33)
35 PF01640 Peptidase_C10: Peptid 50.7 65 0.0014 28.0 7.0 50 237-312 141-192 (192)
36 PF07172 GRP: Glycine rich pro 39.2 14 0.0003 28.4 0.8 16 1-17 1-16 (95)
37 PF02402 Lysis_col: Lysis prot 37.9 19 0.00041 23.3 1.1 14 1-16 1-14 (46)
38 smart00230 CysPc Calpain-like 37.3 90 0.002 29.5 6.2 28 275-303 226-255 (318)
39 PF00648 Peptidase_C2: Calpain 33.7 45 0.00098 31.0 3.5 29 275-303 212-243 (298)
40 PF15588 Imm7: Immunity protei 28.7 2.4E+02 0.0052 22.3 6.4 33 279-311 17-55 (115)
41 PF15284 PAGK: Phage-encoded v 28.4 45 0.00099 23.2 1.8 23 1-23 1-23 (61)
42 KOG4621 Uncharacterized conser 23.0 2.5E+02 0.0055 22.8 5.4 74 235-314 58-143 (167)
43 PF13956 Ibs_toxin: Toxin Ibs, 22.9 48 0.001 17.2 0.9 9 5-13 3-11 (19)
44 TIGR02608 delta_60_rpt delta-6 22.7 2.6E+02 0.0056 19.0 5.0 37 279-315 13-54 (55)
45 PF01754 zf-A20: A20-like zinc 22.4 49 0.0011 18.7 0.9 19 106-124 6-24 (25)
46 PRK13681 hypothetical protein; 21.3 74 0.0016 19.5 1.6 19 1-19 1-19 (35)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-74 Score=519.14 Aligned_cols=278 Identities=31% Similarity=0.589 Sum_probs=230.0
Q ss_pred hhhhcccccccchHHHHH--HHHcCCCCCeEEecCCCCCCCCHHHHHH-HhCCCCCCCCCCCCCCccccCCCCCCCCcee
Q 018707 24 VVSKLKLDSHILQDSIIK--EVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGVPVKTHDKSLKLPKSFD 100 (351)
Q Consensus 24 ~~~~~~~~~~~~~~~~i~--~~n~~~~~~~~~~~n~~F~d~t~~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~D 100 (351)
+..|..+|+.+|..++++ +++++...+-..|+| +|+|||+|||++ +++.+....................||++||
T Consensus 84 s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt-qFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~~~lP~~fD 162 (372)
T KOG1542|consen 84 SREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT-QFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPGESLPESFD 162 (372)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc-chhhcCHHHHHHHhhccccccccCccccccCcCCCCCCCCcccc
Confidence 567788899999988644 466644447888999 999999999998 5555542111111111111234568999999
Q ss_pred cCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhcCCCCCCCCCCCChHHHHHHHHH-cC
Q 018707 101 ARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVH-HG 179 (351)
Q Consensus 101 ~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~-~G 179 (351)
||++ |.||||||||+||||||||+++++|+++.|++++.++||||+|+||+. +++||+||.+..||+|+.+ .|
T Consensus 163 WR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~~~~~~~gG 236 (372)
T KOG1542|consen 163 WRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAFKYIKKAGG 236 (372)
T ss_pred hhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChhHHHHHHHHhCC
Confidence 9998 889999999999999999999999999999999999999999999995 6899999999999999554 68
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eCCcHHHHHHHHHHCCCEEEEEEcccc
Q 018707 180 VVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYED 258 (351)
Q Consensus 180 i~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~~~~~~~ 258 (351)
+..|++|||.+.. ...|.... ......|.+|. ++.|+++|.+.|.++|||+|+|++ ..
T Consensus 237 L~~E~dYPY~g~~----------------~~~C~~~~----~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa-~~ 295 (372)
T KOG1542|consen 237 LEKEKDYPYTGKK----------------GNQCHFDK----SKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA-KP 295 (372)
T ss_pred ccccccCCccccC----------------CCccccch----hhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch-HH
Confidence 9999999997651 12565443 24567888888 888999999999999999999997 57
Q ss_pred cccccCCeeec---CCCCccCCcEEEEEEeCCCCC-CccEEEEEccCCCCCCCCceEEEEecCCccccccceeEee
Q 018707 259 FAHYKSGVYKH---ITGDVMGGHAVKLIGWGTSDD-GEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGL 330 (351)
Q Consensus 259 f~~y~~Giy~~---~~~~~~~~Hav~iVGyg~~~~-g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~ 330 (351)
++.|++||..+ .|....++|+||||||| ... .++|||||||||++|||+||+|+.||.|.|||++.+.+++
T Consensus 296 mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG-~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 296 MQFYRGGVSCPSKYICSPKLLNHAVLLVGYG-SSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred HHHhcccccCCCcccCCccccCceEEEEeec-CCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 99999999977 24445589999999999 555 8999999999999999999999999999999999988764
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=6.9e-68 Score=501.10 Aligned_cols=277 Identities=23% Similarity=0.488 Sum_probs=217.7
Q ss_pred hhcccccccchHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHH-HhCCCC-CCCCCC-CCCCccc-cCCCCCCCCce
Q 018707 26 SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKP-TPKGLL-LGVPVKT-HDKSLKLPKSF 99 (351)
Q Consensus 26 ~~~~~~~~~~~~~--~i~~~n~~~~~~~~~~~n~~F~d~t~~E~~~-~~~~~~-~~~~~~-~~~~~~~-~~~~~~lP~s~ 99 (351)
.|..+|+.+|.++ +|++||++ +.+|++++| +|+|||.|||++ +++... ...... ....... .....+||++|
T Consensus 53 ~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N-~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~ 130 (348)
T PTZ00203 53 TEEQQRLANFERNLELMREHQAR-NPHARFGIT-KFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAV 130 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCeEEecc-ccccCCHHHHHHHhcCCCcccccccccccccccccccccccCCCCC
Confidence 3566777888877 68899974 568999999 999999999987 443221 110100 0000000 01123699999
Q ss_pred ecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhcCCCCCCCCCCCChHHHHHHHHHc-
Q 018707 100 DARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH- 178 (351)
Q Consensus 100 D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~- 178 (351)
|||++ |.|+||||||.||||||||+++++|++++++++..+.||+|+|+||+. .+.||+||++..||+|+.++
T Consensus 131 DWR~~----g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~~~GC~GG~~~~a~~yi~~~~ 204 (348)
T PTZ00203 131 DWREK----GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH--VDNGCGGGLMLQAFEWVLRNM 204 (348)
T ss_pred cCCcC----CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC--CCCCCCCCCHHHHHHHHHHhc
Confidence 99987 789999999999999999999999999999999999999999999986 36799999999999999764
Q ss_pred --CcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eCCcHHHHHHHHHHCCCEEEEEEc
Q 018707 179 --GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTV 255 (351)
Q Consensus 179 --Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~~~~ 255 (351)
|+++|++|||.+..+ . .+ .|..... ....+.+.+|. +..++++|+++|+++|||+|+|++
T Consensus 205 ~ggi~~e~~YPY~~~~~-~---------~~----~C~~~~~---~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a 267 (348)
T PTZ00203 205 NGTVFTEKSYPYVSGNG-D---------VP----ECSNSSE---LAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDA 267 (348)
T ss_pred CCCCCccccCCCccCCC-C---------CC----cCCCCcc---cccceEecceeecCcCHHHHHHHHHhCCCEEEEEEh
Confidence 588999999965421 0 01 2322110 01124566776 566888999999999999999998
Q ss_pred ccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCccccccceeEee
Q 018707 256 YEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGL 330 (351)
Q Consensus 256 ~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~ 330 (351)
. +|++|++|||+. +.....+|||+||||| +++|++|||||||||++||++|||||+||.|.|||++.++.+.
T Consensus 268 ~-~f~~Y~~GIy~~-c~~~~~nHaVliVGYG-~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 268 S-SFMSYHSGVLTS-CIGEQLNHGVLLVGYN-MTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVH 339 (348)
T ss_pred h-hhcCccCceeec-cCCCCCCeEEEEEEEe-cCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEEe
Confidence 4 899999999975 3333469999999999 6778999999999999999999999999999999999988773
No 3
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-66 Score=488.66 Aligned_cols=276 Identities=40% Similarity=0.741 Sum_probs=227.1
Q ss_pred hcccccccchHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHH-HhCCCCCCCCCCCCCCccccCCCCCCCCceecCC
Q 018707 27 KLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARS 103 (351)
Q Consensus 27 ~~~~~~~~~~~~--~i~~~n~~~~~~~~~~~n~~F~d~t~~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~D~R~ 103 (351)
+..+|+.+|..+ +++.+|.....+|++++| +|+|++.+|+++ +.+..++.. .. ..........+||++||||+
T Consensus 42 ~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n-~~~d~~~ee~~~~~~~~~~~~~-~~--~~~~~~~~~~~~p~s~DwR~ 117 (325)
T KOG1543|consen 42 EKKARRAIFKENLQKIESHNLKYVLSFLMGVN-QFADLTTEEFKRKKTGKKPPEI-KR--DKFTEKLDGDDLPDSFDWRD 117 (325)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhceeeeeccc-cccccchHHHHHhhccccCccc-cc--cccccccchhhCCCCccccc
Confidence 334444556555 478888865789999999 999999999988 444443322 11 01111223468999999999
Q ss_pred CCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcC-CCccCcHHHHHHhcCCCCCCCCCCCChHHHHHHHHHcCcCC
Q 018707 104 AWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVT 182 (351)
Q Consensus 104 ~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~-~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~Gi~~ 182 (351)
+| ..++|||||+.||||||||++++||++++|+++ ..+.||+|+|+||... +++||+||.+..|++|++++|+++
T Consensus 118 ~~---~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G~~t 193 (325)
T KOG1543|consen 118 KG---AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNGGVT 193 (325)
T ss_pred cC---CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhCCCC
Confidence 97 457889999999999999999999999999999 9999999999999984 688999999999999999999888
Q ss_pred -CCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eCCcHHHHHHHHHHCCCEEEEEEcccccc
Q 018707 183 -EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFA 260 (351)
Q Consensus 183 -e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~~~~~~~f~ 260 (351)
+++|||.+.. .+|..... ...+.+.++. ++.++++|+++|+.+|||+|+|+++++|+
T Consensus 194 ~~~~Ypy~~~~-----------------~~C~~~~~----~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~ 252 (325)
T KOG1543|consen 194 ECENYPYIGKD-----------------GTCKSNKK----DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFS 252 (325)
T ss_pred CCcCCCCcCCC-----------------CCccCCCc----cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhh
Confidence 9999997651 14444332 2334455554 77789999999999999999999999999
Q ss_pred cccCCeeecCCCCc-cCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCccccccceeEeecc
Q 018707 261 HYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPS 332 (351)
Q Consensus 261 ~y~~Giy~~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~p~ 332 (351)
+|++|||.++++.. .++|||+|||||. .++.+|||||||||++|||+|||||.|+.+.|+|++.+.++.|+
T Consensus 253 ~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 253 LYKGGVYAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred hccCceEeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 99999999998765 4899999999995 77899999999999999999999999999999999998886554
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=3.4e-66 Score=503.16 Aligned_cols=297 Identities=27% Similarity=0.514 Sum_probs=231.5
Q ss_pred cchhHHHHHHHHHHHHhhhh------hhhhcccccccchHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHH-HhCCC
Q 018707 4 TKLIMDPILCLTCFATFAEG------VVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVK 74 (351)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~i~~~n~~~~~~~~~~~n~~F~d~t~~E~~~-~~~~~ 74 (351)
+|++|..+-.+.-|-.+... ...|...|+.+|.++ .|++||++.+.+|++++| +|+|||.|||++ +++..
T Consensus 156 ~~~~~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiN-qFsDlT~EEF~~~~l~~~ 234 (489)
T PTZ00021 156 SKFLMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMN-RFGDLSFEEFKKKYLTLK 234 (489)
T ss_pred hhhhccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEecc-ccccCCHHHHHHHhcccc
Confidence 57888888888888776655 234566788888887 699999866689999999 999999999987 55543
Q ss_pred CC-CCCC-C--CC-CCc----cc-cCCC-CCCCCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCCC
Q 018707 75 PT-PKGL-L--LG-VPV----KT-HDKS-LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMN 143 (351)
Q Consensus 75 ~~-~~~~-~--~~-~~~----~~-~~~~-~~lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~ 143 (351)
.. .... . .. ... .. .+.. ..+|.+||||+. +.|+||||||.||||||||+++++|++++|+++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~ 310 (489)
T PTZ00021 235 SFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNEL 310 (489)
T ss_pred ccccccccccccccccccccccccccccccCCccccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCCC
Confidence 11 1110 0 00 000 00 0111 124999998887 78999999999999999999999999999999999
Q ss_pred ccCcHHHHHHhcCCCCCCCCCCCChHHHHHHHHHc-CcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 018707 144 LSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNS 222 (351)
Q Consensus 144 ~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~-Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~ 222 (351)
+.||+|+|+||+. .+.||+||++..||+|+.+. |+++|++|||.+.. .+ .|..... .
T Consensus 311 v~LSeQqLVDCs~--~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~------------~~----~C~~~~~----~ 368 (489)
T PTZ00021 311 VSLSEQELVDCSF--KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDT------------PE----LCNIDRC----K 368 (489)
T ss_pred cccCHHHHhhhcc--CCCCCCCcchHhhhhhhhhccccCcccccCccCCC------------CC----ccccccc----c
Confidence 9999999999985 36899999999999999766 89999999996531 11 2321110 1
Q ss_pred eeeEeeeeE-eCCcHHHHHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCC---------CCc
Q 018707 223 KHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSD---------DGE 292 (351)
Q Consensus 223 ~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~---------~g~ 292 (351)
..+++.+|. ++ +++|+++|+.+|||+|+|+++.+|++|++|||+++|+. .++|||+|||||+++ .+.
T Consensus 369 ~~~~i~~y~~i~--~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~ 445 (489)
T PTZ00021 369 EKYKIKSYVSIP--EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGECGE-EPNHAVILVGYGMEEIYNSDTKKMEKR 445 (489)
T ss_pred ccceeeeEEEec--HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCCCCCC-ccceEEEEEEecCcCCcccccccCCCC
Confidence 235666776 43 47899999999999999999889999999999876544 369999999999432 124
Q ss_pred cEEEEEccCCCCCCCCceEEEEecC----CccccccceeEee
Q 018707 293 DYWILANQWNRSWGADGYFKIKRGS----NECGIEEDVVAGL 330 (351)
Q Consensus 293 ~ywivkNSWG~~WG~~Gy~~i~~g~----n~cgi~~~~~~~~ 330 (351)
+|||||||||++|||+|||||+|+. |.|||...+.+++
T Consensus 446 ~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~ 487 (489)
T PTZ00021 446 YYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPL 487 (489)
T ss_pred CEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEe
Confidence 7999999999999999999999986 5899999887654
No 5
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.6e-64 Score=488.56 Aligned_cols=272 Identities=28% Similarity=0.541 Sum_probs=210.9
Q ss_pred hhcccccccchHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHH-HhCCCCCCCC----CC--------CCCCc-cc-
Q 018707 26 SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKG----LL--------LGVPV-KT- 88 (351)
Q Consensus 26 ~~~~~~~~~~~~~--~i~~~n~~~~~~~~~~~n~~F~d~t~~E~~~-~~~~~~~~~~----~~--------~~~~~-~~- 88 (351)
.|...|+.+|.++ .|++||. +.+|++++| +|+|||.|||.+ +++...+... .. ..... ..
T Consensus 141 ~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN-~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (448)
T PTZ00200 141 AERLNRFLTFRNNYLEVKSHKG--DEPYSKEIN-KFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNL 217 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--cCCeEEecc-ccccCCHHHHHHHhccCCCccccccccccccccccccccccccccc
Confidence 4455677788877 5777775 368999999 999999999987 4443321100 00 00000 00
Q ss_pred -------cC---CCCCCCCceecCCCCCCCCCCCccCCCC-CCChHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhcCC
Q 018707 89 -------HD---KSLKLPKSFDARSAWPQCSTISRILDQG-HCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGF 157 (351)
Q Consensus 89 -------~~---~~~~lP~s~D~R~~w~~~~~v~pV~dQg-~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~ 157 (351)
.. ....+|++||||+. +.++|||||| .||||||||+++++|++++++++..+.||+|||+||..
T Consensus 218 ~~~~~~~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~- 292 (448)
T PTZ00200 218 KKAKNTDEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDT- 292 (448)
T ss_pred ccccccccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccC-
Confidence 00 01136999999887 7899999999 99999999999999999999999999999999999985
Q ss_pred CCCCCCCCCChHHHHHHHHHcCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeEeCCcHH
Q 018707 158 LCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPE 237 (351)
Q Consensus 158 ~~~~gc~GG~~~~a~~~~~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~ 237 (351)
.+.||+||++..|++|++++|+++|++|||.+.. ..|.... ...+.+.+|.+..+.+
T Consensus 293 -~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~-----------------~~C~~~~-----~~~~~i~~y~~~~~~~ 349 (448)
T PTZ00200 293 -KSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKD-----------------GKCVVSS-----TKKVYIDSYLVAKGKD 349 (448)
T ss_pred -ccCCCCCCcHHHHHHHHhhcCccccccCCCCCCC-----------------CCCcCCC-----CCeeEecceEecCHHH
Confidence 3689999999999999999999999999996541 1333221 1224466777444445
Q ss_pred HHHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCC-CCCccEEEEEccCCCCCCCCceEEEEec
Q 018707 238 DIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTS-DDGEDYWILANQWNRSWGADGYFKIKRG 316 (351)
Q Consensus 238 ~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~Gy~~i~~g 316 (351)
.++++ +..|||+|+|.++++|+.|++|||+++|+.. ++|||+|||||.+ ++|.+|||||||||++||++|||||+|+
T Consensus 350 ~l~~~-l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~ 427 (448)
T PTZ00200 350 VLNKS-LVISPTVVYIAVSRELLKYKSGVYNGECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERT 427 (448)
T ss_pred HHHHH-HhcCCEEEEeecccccccCCCCccccccCCC-CcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeC
Confidence 55555 4689999999998899999999998766544 7999999999853 4688999999999999999999999995
Q ss_pred ---CCccccccceeEee
Q 018707 317 ---SNECGIEEDVVAGL 330 (351)
Q Consensus 317 ---~n~cgi~~~~~~~~ 330 (351)
.|.|||++.+.+++
T Consensus 428 ~~g~n~CGI~~~~~~P~ 444 (448)
T PTZ00200 428 NEGTDKCGILTVGLTPV 444 (448)
T ss_pred CCCCCcCCccccceeeE
Confidence 58999999887654
No 6
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.9e-61 Score=436.84 Aligned_cols=228 Identities=55% Similarity=1.106 Sum_probs=186.4
Q ss_pred CCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcC--CCccCcHHHHHHhcCCCCCCCCCCCChHHHHH
Q 018707 96 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 173 (351)
Q Consensus 96 P~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~ 173 (351)
|++||||+.|.++..|+||+|||.||||||||++++||++++|+++ ..+.||+|+|+||+.. .+.||+||++..||+
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHH
Confidence 8999999998877667799999999999999999999999999888 7899999999999862 367999999999999
Q ss_pred HHHHcCcCCCCcccCCCCCC-CCC---CCCCCCCCCccccccccccccc-cccceeeEeeeeE-eCCcHHHHHHHHHHCC
Q 018707 174 YFVHHGVVTEECDPYFDSTG-CSH---PGCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYR-INSDPEDIMAEIYKNG 247 (351)
Q Consensus 174 ~~~~~Gi~~e~~~PY~~~~~-~~~---~~c~~~~~~~~~~~~c~~~~~~-~~~~~~~~i~~~~-~~~~~~~ik~~l~~~g 247 (351)
|++++|+++|++|||..... |.. ..|. ....|...|...... +.... +.+..+. +..++++||++|+++|
T Consensus 80 ~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~-~~~~~~~~~~~~~~~ik~~l~~~G 155 (236)
T cd02620 80 YLTTTGVVTGGCQPYTIPPCGHHPEGPPPCC---GTPYCTPKCQDGCEKTYEEDK-HKGKSAYSVPSDETDIMKEIMTNG 155 (236)
T ss_pred HHHhcCCCcCCEecCcCCCCccCCCCCCCCC---CCCCCCCCCCcCCccccceee-eeecceeeeCCHHHHHHHHHHHCC
Confidence 99999999999999976432 111 1111 122333445433211 12122 3343433 5567899999999999
Q ss_pred CEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCcccccccee
Q 018707 248 PVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 327 (351)
Q Consensus 248 PV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~ 327 (351)
||+++|.++++|+.|++|||+..++...++|||+||||| ++++++|||||||||++|||+|||||+||.|.|||+++++
T Consensus 156 Pv~v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg-~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~ 234 (236)
T cd02620 156 PVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWG-VENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234 (236)
T ss_pred CeEEEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEe-ccCCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence 999999998899999999998766555679999999999 6688999999999999999999999999999999999987
Q ss_pred Ee
Q 018707 328 AG 329 (351)
Q Consensus 328 ~~ 329 (351)
++
T Consensus 235 ~~ 236 (236)
T cd02620 235 AG 236 (236)
T ss_pred cC
Confidence 54
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.8e-60 Score=433.91 Aligned_cols=223 Identities=40% Similarity=0.785 Sum_probs=181.9
Q ss_pred CCCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCC------CccCcHHHHHHhcCCCCCCCCCCCCh
Q 018707 95 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM------NLSLSVNDLLACCGFLCGDGCDGGYP 168 (351)
Q Consensus 95 lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~------~~~lS~q~l~~c~~~~~~~gc~GG~~ 168 (351)
||++||||+.|++++.|+||||||.||||||||++++||++++|+++. .+.||+|||++|.. .+.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCH
Confidence 799999999987777899999999999999999999999999998875 78999999999985 3679999999
Q ss_pred HHHHHHHHHcCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeEeCCcHHHHHHHHHHCCC
Q 018707 169 ISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGP 248 (351)
Q Consensus 169 ~~a~~~~~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gP 248 (351)
..|++|++++|+++|++|||... ....|.... ..|. .+....+..+.++....++++||++|+++||
T Consensus 79 ~~a~~~~~~~Gi~~e~~yPY~~~---~~~~C~~~~------~~~~----~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GP 145 (243)
T cd02621 79 FLVGKFAEDFGIVTEDYFPYTAD---DDRPCKASP------SECR----RYYFSDYNYVGGCYGCTNEDEMKWEIYRNGP 145 (243)
T ss_pred HHHHHHHHhcCcCCCceeCCCCC---CCCCCCCCc------cccc----cccccceeEcccccccCCHHHHHHHHHHcCC
Confidence 99999999999999999999651 111221100 0011 0111112233333333577999999999999
Q ss_pred EEEEEEcccccccccCCeeecCC-----CC--------ccCCcEEEEEEeCCCC-CCccEEEEEccCCCCCCCCceEEEE
Q 018707 249 VEVSFTVYEDFAHYKSGVYKHIT-----GD--------VMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIK 314 (351)
Q Consensus 249 V~v~~~~~~~f~~y~~Giy~~~~-----~~--------~~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~ 314 (351)
|+++|++.++|.+|++|||+... .. ..++|||+|||||++. ++++|||||||||++||++|||||+
T Consensus 146 v~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~ 225 (243)
T cd02621 146 IVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIR 225 (243)
T ss_pred EEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEe
Confidence 99999998899999999998752 11 2479999999999443 3899999999999999999999999
Q ss_pred ecCCccccccceeEeecc
Q 018707 315 RGSNECGIEEDVVAGLPS 332 (351)
Q Consensus 315 ~g~n~cgi~~~~~~~~p~ 332 (351)
|+.|+|||++.++++.|.
T Consensus 226 ~~~~~cgi~~~~~~~~~~ 243 (243)
T cd02621 226 RGTNECGIESQAVFAYPI 243 (243)
T ss_pred cCCcccCcccceEeeccC
Confidence 999999999999999883
No 8
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=9.3e-60 Score=427.71 Aligned_cols=224 Identities=36% Similarity=0.740 Sum_probs=185.3
Q ss_pred CCCceecCCCCCCCCCCCccCCCC---CCChHHHHHHHHHHHHHHHHHcC---CCccCcHHHHHHhcCCCCCCCCCCCCh
Q 018707 95 LPKSFDARSAWPQCSTISRILDQG---HCGSCWAFGAVEALSDRFCIHFG---MNLSLSVNDLLACCGFLCGDGCDGGYP 168 (351)
Q Consensus 95 lP~s~D~R~~w~~~~~v~pV~dQg---~cGsCwAfA~~~~le~~~~i~~~---~~~~lS~q~l~~c~~~~~~~gc~GG~~ 168 (351)
||++||||+.+ +..+++|||||| .||||||||++++||++++|+++ ..+.||+|||+||+. +.||+||++
T Consensus 1 lP~~~Dwr~~~-~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~ 76 (239)
T cd02698 1 LPKSWDWRNVN-GVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDP 76 (239)
T ss_pred CCCCcccccCC-CCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCH
Confidence 79999999873 223799999998 99999999999999999999876 367999999999986 579999999
Q ss_pred HHHHHHHHHcCcCCCCcccCCCCC-CCCC-CCCCCCCCCcccc--ccccccccccccceeeEeeeeEeCCcHHHHHHHHH
Q 018707 169 ISAWRYFVHHGVVTEECDPYFDST-GCSH-PGCEPAYPTPKCV--RKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIY 244 (351)
Q Consensus 169 ~~a~~~~~~~Gi~~e~~~PY~~~~-~~~~-~~c~~~~~~~~~~--~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~ 244 (351)
..|++|++++|+++|++|||.... .|.. ..| ..|. ..|.... ....+.+..|..-.++++||++|+
T Consensus 77 ~~a~~~~~~~Gl~~e~~yPY~~~~~~C~~~~~~------~~c~~~~~c~~~~----~~~~~~i~~~~~~~~~~~i~~~l~ 146 (239)
T cd02698 77 GGVYEYAHKHGIPDETCNPYQAKDGECNPFNRC------GTCNPFGECFAIK----NYTLYFVSDYGSVSGRDKMMAEIY 146 (239)
T ss_pred HHHHHHHHHcCcCCCCeeCCcCCCCCCcCCCCC------CCcccCccccccc----ccceEEeeeceecCCHHHHHHHHH
Confidence 999999999999999999996542 2332 111 1222 1332211 133456777762235689999999
Q ss_pred HCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecC-----Cc
Q 018707 245 KNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-----NE 319 (351)
Q Consensus 245 ~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~-----n~ 319 (351)
++|||+++|.++++|+.|++|||+..++...++|||+|||||+++++++|||||||||++||++|||||+||. |+
T Consensus 147 ~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~ 226 (239)
T cd02698 147 ARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYN 226 (239)
T ss_pred HcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccc
Confidence 9999999999988999999999988766666899999999994434899999999999999999999999999 99
Q ss_pred cccccceeEeecc
Q 018707 320 CGIEEDVVAGLPS 332 (351)
Q Consensus 320 cgi~~~~~~~~p~ 332 (351)
||||+.++++.|.
T Consensus 227 ~~i~~~~~~~~~~ 239 (239)
T cd02698 227 LAIEEDCAWADPI 239 (239)
T ss_pred cccccceEEEeeC
Confidence 9999999999883
No 9
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=5.1e-57 Score=447.75 Aligned_cols=241 Identities=29% Similarity=0.528 Sum_probs=186.3
Q ss_pred CCCCCCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCC----------CccCcHHHHHHhcCCCCCC
Q 018707 92 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM----------NLSLSVNDLLACCGFLCGD 161 (351)
Q Consensus 92 ~~~lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~----------~~~lS~q~l~~c~~~~~~~ 161 (351)
..+||++||||+.|+.++.++||+|||.||||||||++++||++++|+++. ...||+|+|+||+. .+.
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nq 455 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQ 455 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCC
Confidence 357999999999998888899999999999999999999999999998642 12799999999986 368
Q ss_pred CCCCCChHHHHHHHHHcCcCCCCcccCCCC-CCCCCCCCCCCCC---------------Ccccccccccc---ccccccc
Q 018707 162 GCDGGYPISAWRYFVHHGVVTEECDPYFDS-TGCSHPGCEPAYP---------------TPKCVRKCVKK---NQLWRNS 222 (351)
Q Consensus 162 gc~GG~~~~a~~~~~~~Gi~~e~~~PY~~~-~~~~~~~c~~~~~---------------~~~~~~~c~~~---~~~~~~~ 222 (351)
||+||++..|++|++++||++|++|||.+. ..|....+..... .+.|...|... ..... .
T Consensus 456 GC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 534 (693)
T PTZ00049 456 GCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSE-P 534 (693)
T ss_pred CcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccc-c
Confidence 999999999999999999999999999654 3354321110000 01111111110 00001 1
Q ss_pred eeeEeeeeE-e--------CCcHHHHHHHHHHCCCEEEEEEcccccccccCCeeecC-------CCC-------------
Q 018707 223 KHYSISAYR-I--------NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI-------TGD------------- 273 (351)
Q Consensus 223 ~~~~i~~~~-~--------~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~-------~~~------------- 273 (351)
..+.++.|. + ..++++||++|+++|||+|+|+++++|++|++|||+.+ |..
T Consensus 535 ~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 535 ARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred cceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 223334443 2 14688999999999999999999889999999999853 211
Q ss_pred -ccCCcEEEEEEeCCCC-CCc--cEEEEEccCCCCCCCCceEEEEecCCccccccceeEeeccCCC
Q 018707 274 -VMGGHAVKLIGWGTSD-DGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKN 335 (351)
Q Consensus 274 -~~~~Hav~iVGyg~~~-~g~--~ywivkNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~p~~~~ 335 (351)
...+|||+|||||.++ +|+ +|||||||||++||++|||||+||.|.|||+++++++.|++..
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~r 680 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFSR 680 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeeeccc
Confidence 1369999999999432 453 7999999999999999999999999999999999999998753
No 10
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=6.7e-57 Score=401.60 Aligned_cols=205 Identities=37% Similarity=0.740 Sum_probs=178.6
Q ss_pred CCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhcCCCCCCCCCCCChHHHHHHH
Q 018707 96 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYF 175 (351)
Q Consensus 96 P~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~ 175 (351)
|++||||+. +.++||+|||.||+|||||++++||++++++++...+||+|+|++|... .+.+|.||++..|++++
T Consensus 1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~ 75 (210)
T cd02248 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYV 75 (210)
T ss_pred CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHH
Confidence 789999987 5589999999999999999999999999999998999999999999863 46899999999999999
Q ss_pred HHcCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eCC-cHHHHHHHHHHCCCEEEEE
Q 018707 176 VHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVEVSF 253 (351)
Q Consensus 176 ~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~l~~~gPV~v~~ 253 (351)
+++|+++|++|||... ...|..... ...+++..|. +.. ++++||++|+++|||++++
T Consensus 76 ~~~Gi~~e~~yPY~~~-----------------~~~C~~~~~----~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~ 134 (210)
T cd02248 76 KNGGLASESDYPYTGK-----------------DGTCKYNSS----KVGAKITGYSNVPPGDEEALKAALANYGPVSVAI 134 (210)
T ss_pred HHCCcCccccCCccCC-----------------CCCccCCCC----cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEE
Confidence 9999999999999653 112332211 3456777776 443 5799999999999999999
Q ss_pred EcccccccccCCeeecCCC-CccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCcccccccee
Q 018707 254 TVYEDFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 327 (351)
Q Consensus 254 ~~~~~f~~y~~Giy~~~~~-~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~ 327 (351)
.+.++|..|++|||..+.+ ...++|||+||||| ++.+++|||||||||++||++|||||+|+.|.|||+.++.
T Consensus 135 ~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~-~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~ 208 (210)
T cd02248 135 DASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYG-TENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYAS 208 (210)
T ss_pred ecCcccccCCCCceeCCCCCCCcCCEEEEEEEEe-ecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeee
Confidence 9999999999999988765 45679999999999 5668999999999999999999999999999999997754
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=6.3e-56 Score=435.95 Aligned_cols=225 Identities=27% Similarity=0.508 Sum_probs=182.2
Q ss_pred CCCCCCceecCCCCCCCCCCCccCCCCC---CChHHHHHHHHHHHHHHHHHcC------CCccCcHHHHHHhcCCCCCCC
Q 018707 92 SLKLPKSFDARSAWPQCSTISRILDQGH---CGSCWAFGAVEALSDRFCIHFG------MNLSLSVNDLLACCGFLCGDG 162 (351)
Q Consensus 92 ~~~lP~s~D~R~~w~~~~~v~pV~dQg~---cGsCwAfA~~~~le~~~~i~~~------~~~~lS~q~l~~c~~~~~~~g 162 (351)
..+||++||||+.+ +.++++||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+. .+.|
T Consensus 202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~G 278 (548)
T PTZ00364 202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQG 278 (548)
T ss_pred ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCC
Confidence 46799999999972 3347999999999 9999999999999999999884 468999999999985 3689
Q ss_pred CCCCChHHHHHHHHHcCcCCCCcc--cCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eCCcHHHH
Q 018707 163 CDGGYPISAWRYFVHHGVVTEECD--PYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDI 239 (351)
Q Consensus 163 c~GG~~~~a~~~~~~~Gi~~e~~~--PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~i 239 (351)
|+||++..|++|++++|+++|++| ||.+..+ ..+.| ...+. ...+....+..+.+|. +..++++|
T Consensus 279 CdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg-~~~~C---------k~~~~--~~~y~~~~~~~I~gyy~~~~~e~~I 346 (548)
T PTZ00364 279 CAGGFPEEVGKFAETFGILTTDSYYIPYDSGDG-VERAC---------KTRRP--SRRYYFTNYGPLGGYYGAVTDPDEI 346 (548)
T ss_pred CCCCcHHHHHHHHHhCCcccccccCCCCCCCCC-CCCCC---------CCCcc--cceeeeeeeEEecceeecCCcHHHH
Confidence 999999999999999999999999 9965422 11112 11110 0111112233455554 44577899
Q ss_pred HHHHHHCCCEEEEEEcccccccccCCeeecC---------CC----------CccCCcEEEEEEeCCCCCCccEEEEEcc
Q 018707 240 MAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------TG----------DVMGGHAVKLIGWGTSDDGEDYWILANQ 300 (351)
Q Consensus 240 k~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~---------~~----------~~~~~Hav~iVGyg~~~~g~~ywivkNS 300 (351)
+++|+++|||+|+|+++.+|+.|++|||.+. ++ ...++|||+|||||.+++|.+|||||||
T Consensus 347 ~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNS 426 (548)
T PTZ00364 347 IWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDP 426 (548)
T ss_pred HHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECC
Confidence 9999999999999999989999999998631 11 1246999999999965678999999999
Q ss_pred CCC--CCCCCceEEEEecCCccccccceeEeec
Q 018707 301 WNR--SWGADGYFKIKRGSNECGIEEDVVAGLP 331 (351)
Q Consensus 301 WG~--~WG~~Gy~~i~~g~n~cgi~~~~~~~~p 331 (351)
||+ +|||+|||||+||.|+||||++++++.|
T Consensus 427 WGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~ 459 (548)
T PTZ00364 427 WGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW 459 (548)
T ss_pred CCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence 999 9999999999999999999999999988
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=8.7e-55 Score=389.60 Aligned_cols=212 Identities=43% Similarity=0.816 Sum_probs=175.3
Q ss_pred CCCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHc-CCCccCcHHHHHHhcCCCCCCCCCCCChHHHHH
Q 018707 95 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF-GMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 173 (351)
Q Consensus 95 lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~-~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~ 173 (351)
||++||||+.+ +.++||+||+.||+|||||++++||++++++. ...+.||+|+|++|.. ..+.+|+||++..|++
T Consensus 1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~ 76 (219)
T PF00112_consen 1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALK 76 (219)
T ss_dssp STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHH
T ss_pred CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccce
Confidence 89999999952 35999999999999999999999999999999 7899999999999987 3467999999999999
Q ss_pred HHHH-cCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eCC-cHHHHHHHHHHCCCEE
Q 018707 174 YFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVE 250 (351)
Q Consensus 174 ~~~~-~Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~l~~~gPV~ 250 (351)
++++ +|+++|++|||.... . ..|...... ...+++..|. +.. ++++||++|+++|||+
T Consensus 77 ~~~~~~Gi~~e~~~pY~~~~------------~----~~c~~~~~~---~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~ 137 (219)
T PF00112_consen 77 YIKNNNGIVTEEDYPYNGNE------------N----PTCKSKKSN---SYYVKIKGYGKVKDNDIEDIKKALMKYGPVV 137 (219)
T ss_dssp HHHHHTSBEBTTTS--SSSS------------S----CSSCHSGGG---EEEBEESEEEEEESTCHHHHHHHHHHHSSEE
T ss_pred eecccCcccccccccccccc------------c----ccccccccc---cccccccccccccccchhHHHHHHhhCceee
Confidence 9999 999999999996531 0 234332211 1145677776 443 6899999999999999
Q ss_pred EEEEccc-ccccccCCeeecCCC-CccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCC-cccccccee
Q 018707 251 VSFTVYE-DFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSN-ECGIEEDVV 327 (351)
Q Consensus 251 v~~~~~~-~f~~y~~Giy~~~~~-~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n-~cgi~~~~~ 327 (351)
+++.+.+ +|..|++|||..+.+ ...++|||+||||| ++.+++|||||||||++||++|||||+|+.+ +|||+++++
T Consensus 138 ~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~-~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~ 216 (219)
T PF00112_consen 138 ASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYD-DENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAV 216 (219)
T ss_dssp EEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEE-EETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEE
T ss_pred eeeeccccccccccceeeeccccccccccccccccccc-cccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceee
Confidence 9999988 699999999998743 35689999999999 6669999999999999999999999999987 999999999
Q ss_pred Eee
Q 018707 328 AGL 330 (351)
Q Consensus 328 ~~~ 330 (351)
+++
T Consensus 217 ~~~ 219 (219)
T PF00112_consen 217 YPI 219 (219)
T ss_dssp EEE
T ss_pred ecC
Confidence 875
No 13
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=5.6e-54 Score=383.63 Aligned_cols=299 Identities=33% Similarity=0.658 Sum_probs=239.8
Q ss_pred hcccccccchHHHHHHHHcCCCCCeEEecCCCCCCCCHHH-HHHHhCCCCCCCCCCCCCCcc-ccCCCCCCCCceecCCC
Q 018707 27 KLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQ-FKHLLGVKPTPKGLLLGVPVK-THDKSLKLPKSFDARSA 104 (351)
Q Consensus 27 ~~~~~~~~~~~~~i~~~n~~~~~~~~~~~n~~F~d~t~~E-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lP~s~D~R~~ 104 (351)
++.....++++++|+.||+ .+.+|.++..+.|..||.++ |+-.||+.+++.++..+.... ..+...+||+.||.|++
T Consensus 140 KCdq~~CLv~Pd~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~K 218 (470)
T KOG1544|consen 140 KCDQEPCLVDPDMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEK 218 (470)
T ss_pred ecCCceeecCHHHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhc
Confidence 3556678999999999999 78899999888999999888 555888887766554432222 22334789999999999
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcC--CCccCcHHHHHHhcCCCCCCCCCCCChHHHHHHHHHcCcCC
Q 018707 105 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVT 182 (351)
Q Consensus 105 w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~Gi~~ 182 (351)
|++. +.|+.|||+|++.|||+++++..++++|.+. ....||+|+|++|.. ....||+||++..|+=|+++.|++.
T Consensus 219 Wp~l--iH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~-h~q~GC~gG~lDRAWWYlRKrGvVs 295 (470)
T KOG1544|consen 219 WPNL--IHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDT-HQQQGCRGGRLDRAWWYLRKRGVVS 295 (470)
T ss_pred CCcc--ccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhh-hhhccCccCcccchheeeecccccc
Confidence 9965 9999999999999999999999999999765 567899999999987 4568999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCCC-----CccccccccccccccccceeeE-eeeeEeCCcHHHHHHHHHHCCCEEEEEEcc
Q 018707 183 EECDPYFDSTGCSHPGCEPAYP-----TPKCVRKCVKKNQLWRNSKHYS-ISAYRINSDPEDIMAEIYKNGPVEVSFTVY 256 (351)
Q Consensus 183 e~~~PY~~~~~~~~~~c~~~~~-----~~~~~~~c~~~~~~~~~~~~~~-i~~~~~~~~~~~ik~~l~~~gPV~v~~~~~ 256 (351)
..||||.....-..+.|.-... ...-...|..... .....|. ...|.+.+++++|+++||++|||-+.|.|.
T Consensus 296 dhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~--~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VH 373 (470)
T KOG1544|consen 296 DHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYV--NSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVH 373 (470)
T ss_pred cccccccCCCCCCCCCceeeccccCcccccccCcCCCccc--ccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhh
Confidence 9999997665545555532211 1100112332221 1113344 346778899999999999999999999999
Q ss_pred cccccccCCeeecCCCC--------ccCCcEEEEEEeCCCC--CC--ccEEEEEccCCCCCCCCceEEEEecCCcccccc
Q 018707 257 EDFAHYKSGVYKHITGD--------VMGGHAVKLIGWGTSD--DG--EDYWILANQWNRSWGADGYFKIKRGSNECGIEE 324 (351)
Q Consensus 257 ~~f~~y~~Giy~~~~~~--------~~~~Hav~iVGyg~~~--~g--~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgi~~ 324 (351)
++|+.|++|||.+.... ..+.|+|.|.|||.+. +| .+|||..||||+.|||+|||||-||.|+|.||+
T Consensus 374 EDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEs 453 (470)
T KOG1544|consen 374 EDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIES 453 (470)
T ss_pred hhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhH
Confidence 99999999999876421 2478999999999432 22 589999999999999999999999999999999
Q ss_pred ceeEeec
Q 018707 325 DVVAGLP 331 (351)
Q Consensus 325 ~~~~~~p 331 (351)
.+++|+-
T Consensus 454 fvIgAWG 460 (470)
T KOG1544|consen 454 FVIGAWG 460 (470)
T ss_pred hhhhhhh
Confidence 9998876
No 14
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=5.8e-50 Score=346.32 Aligned_cols=168 Identities=47% Similarity=0.982 Sum_probs=147.7
Q ss_pred CCCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhcCCCCCCCCCCCChHHHHHH
Q 018707 95 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY 174 (351)
Q Consensus 95 lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~ 174 (351)
||++||||+. +.++|||||+.||+|||||++++||++++++++..++||+|+|++|... .+.||.||++..|++|
T Consensus 1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~ 75 (174)
T smart00645 1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEY 75 (174)
T ss_pred CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHH
Confidence 7999999997 4599999999999999999999999999999998999999999999873 3569999999999999
Q ss_pred HHHc-CcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeEeCCcHHHHHHHHHHCCCEEEEE
Q 018707 175 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSF 253 (351)
Q Consensus 175 ~~~~-Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gPV~v~~ 253 (351)
+.++ |+++|++|||. . ++.+
T Consensus 76 ~~~~~Gi~~e~~~PY~--------------------------------~---------------------------~~~~ 96 (174)
T smart00645 76 IKKNGGLETESCYPYT--------------------------------G---------------------------SVAI 96 (174)
T ss_pred HHHcCCcccccccCcc--------------------------------c---------------------------EEEE
Confidence 9998 99999999991 0 4555
Q ss_pred EcccccccccCCeeecC-CCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecC-Ccccccccee
Q 018707 254 TVYEDFAHYKSGVYKHI-TGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-NECGIEEDVV 327 (351)
Q Consensus 254 ~~~~~f~~y~~Giy~~~-~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~-n~cgi~~~~~ 327 (351)
.+. +|++|++|||+.+ ++...++|+|+|||||.+.++++|||||||||+.||++|||||.|+. |+|||+....
T Consensus 97 ~~~-~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 97 DAS-DFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred Ecc-cccCCcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 554 6999999999875 33334699999999994338899999999999999999999999998 9999977654
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=9.4e-47 Score=338.31 Aligned_cols=197 Identities=32% Similarity=0.582 Sum_probs=161.0
Q ss_pred ceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcC--CCccCcHHHHHHhcCCCC---CCCCCCCChHHHH
Q 018707 98 SFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLC---GDGCDGGYPISAW 172 (351)
Q Consensus 98 s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~---~~gc~GG~~~~a~ 172 (351)
++|||+. + ++||+|||.||+|||||+++++|++++++.+ ..+.||+|+|++|..... ..+|.||.+..++
T Consensus 1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 4798886 5 8999999999999999999999999999987 889999999999986332 2699999999999
Q ss_pred H-HHHHcCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eC-CcHHHHHHHHHHCCCE
Q 018707 173 R-YFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV 249 (351)
Q Consensus 173 ~-~~~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~-~~~~~ik~~l~~~gPV 249 (351)
. +++++|+++|++|||..... .|...|.. ......+++..|. +. .++++||++|+++|||
T Consensus 76 ~~~~~~~Gi~~e~~~Py~~~~~-------------~~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv 138 (223)
T cd02619 76 LKLVALKGIPPEEDYPYGAESD-------------GEEPKSEA----ALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPV 138 (223)
T ss_pred HHHHHHcCCCccccCCCCCCCC-------------CCCCCCcc----chhhcceeecceeEeCchhHHHHHHHHHHCCCE
Confidence 8 88999999999999965411 11111100 1113446677776 43 3578999999999999
Q ss_pred EEEEEcccccccccCCeee------cCCCCccCCcEEEEEEeCCCCC--CccEEEEEccCCCCCCCCceEEEEecC
Q 018707 250 EVSFTVYEDFAHYKSGVYK------HITGDVMGGHAVKLIGWGTSDD--GEDYWILANQWNRSWGADGYFKIKRGS 317 (351)
Q Consensus 250 ~v~~~~~~~f~~y~~Giy~------~~~~~~~~~Hav~iVGyg~~~~--g~~ywivkNSWG~~WG~~Gy~~i~~g~ 317 (351)
+++|.+.++|..|++|+|. ..++...++|||+||||| ++. +++|||||||||++||++||+||+|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~-~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 139 VAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYD-DNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred EEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeec-CCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9999999999999999873 223445689999999999 544 889999999999999999999999974
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=8.6e-47 Score=384.51 Aligned_cols=231 Identities=23% Similarity=0.393 Sum_probs=171.8
Q ss_pred CCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhcCCCCCCCCCCCC-hHHHHHHHHHcC-cCC
Q 018707 105 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYFVHHG-VVT 182 (351)
Q Consensus 105 w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~-~~~a~~~~~~~G-i~~ 182 (351)
++.|....||||||.||+|||||+++++|++++++++..+.||+|+|+||+....+.||.||+ +..++.|++++| +++
T Consensus 538 ~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLpt 617 (1004)
T PTZ00462 538 ENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPA 617 (1004)
T ss_pred CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcc
Confidence 477766789999999999999999999999999999999999999999998633457999997 555669998875 788
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCccccccccccccc--c--ccceeeEeeeeE-eCC-----c----HHHHHHHHHHCCC
Q 018707 183 EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQL--W--RNSKHYSISAYR-INS-----D----PEDIMAEIYKNGP 248 (351)
Q Consensus 183 e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~--~--~~~~~~~i~~~~-~~~-----~----~~~ik~~l~~~gP 248 (351)
|++|||.... ....|......- ..|...... + .......+.+|. +.. + +++||++|+.+||
T Consensus 618 ESdYPYt~k~--~~g~Cp~~~~~w---~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGP 692 (1004)
T PTZ00462 618 DSNYLYNYTK--VGEDCPDEEDHW---MNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGS 692 (1004)
T ss_pred cccCCCccCC--CCCCCCCCcccc---cccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCC
Confidence 9999996420 001121100000 000000000 0 001122334444 221 1 4689999999999
Q ss_pred EEEEEEccccccccc-CCeeecC-CCCccCCcEEEEEEeCCC----CCCccEEEEEccCCCCCCCCceEEEEe-cCCccc
Q 018707 249 VEVSFTVYEDFAHYK-SGVYKHI-TGDVMGGHAVKLIGWGTS----DDGEDYWILANQWNRSWGADGYFKIKR-GSNECG 321 (351)
Q Consensus 249 V~v~~~~~~~f~~y~-~Giy~~~-~~~~~~~Hav~iVGyg~~----~~g~~ywivkNSWG~~WG~~Gy~~i~~-g~n~cg 321 (351)
|+|+|++. +|+.|. +|||... ++...++|||+|||||.+ .++++|||||||||+.||++|||||.| |.|.||
T Consensus 693 VaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CG 771 (1004)
T PTZ00462 693 VIAYIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCE 771 (1004)
T ss_pred EEEEEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCc
Confidence 99999985 788884 8987654 444457999999999943 125789999999999999999999998 789999
Q ss_pred cccceeEeeccCCCcccccc
Q 018707 322 IEEDVVAGLPSSKNLVKEIT 341 (351)
Q Consensus 322 i~~~~~~~~p~~~~~~~~~~ 341 (351)
|.....+++++++-++.+.+
T Consensus 772 in~i~t~~~fn~d~~~~~~~ 791 (1004)
T PTZ00462 772 DNFIHSVVIFNIDLPKNKKS 791 (1004)
T ss_pred cchheeeeeEeeccccccCC
Confidence 99999999999998887775
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-30 Score=237.79 Aligned_cols=206 Identities=28% Similarity=0.412 Sum_probs=131.0
Q ss_pred CCCCCCceecCCCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhcCCCCCCCC-----CCC
Q 018707 92 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGC-----DGG 166 (351)
Q Consensus 92 ~~~lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc-----~GG 166 (351)
...+|+.||||+. +.|+||||||.||+||||++++++|+.+.-.. ...+|+..+..........+| +||
T Consensus 96 ~~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g 169 (372)
T COG4870 96 SASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGG 169 (372)
T ss_pred cccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCC
Confidence 3569999999998 77999999999999999999999999874332 566776655543321112222 256
Q ss_pred ChHHHHHHHHH-cCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeEeCCcHHHHHHHHHH
Q 018707 167 YPISAWRYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYK 245 (351)
Q Consensus 167 ~~~~a~~~~~~-~Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~ 245 (351)
....+..|+.+ .|.+.|.+.||..... ..+ +|.+..+. ......+..-.-.-+...|++++..
T Consensus 170 ~~~m~~a~l~e~sgpv~et~d~y~~~s~----------~~~----~~~p~~k~--~~~~~~i~~~~~~LdnG~i~~~~~~ 233 (372)
T COG4870 170 NADMSAAYLTEWSGPVYETDDPYSENSY----------FSP----TNLPVTKH--VQEAQIIPSRKKYLDNGNIKAMFGF 233 (372)
T ss_pred ccccccccccccCCcchhhcCccccccc----------cCC----cCCchhhc--cccceecccchhhhcccchHHHHhh
Confidence 55555555544 5899999999954411 000 11111000 0000111111111133458888888
Q ss_pred CCCEEEEEEc--ccccccccCCeeecCCCCccCCcEEEEEEeCCC---------CCCccEEEEEccCCCCCCCCceEEEE
Q 018707 246 NGPVEVSFTV--YEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTS---------DDGEDYWILANQWNRSWGADGYFKIK 314 (351)
Q Consensus 246 ~gPV~v~~~~--~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~---------~~g~~ywivkNSWG~~WG~~Gy~~i~ 314 (351)
+|-+...|.+ +..+. ...+.|....+ ...+|||+||||||. ..|.++||||||||++||++|||||+
T Consensus 234 yg~~s~~~~id~~~~~~-~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwis 311 (372)
T COG4870 234 YGAVSSSMYIDATNSLG-ICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWIS 311 (372)
T ss_pred hccccceeEEecccccc-cccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEE
Confidence 8888766554 22222 22344433333 457999999999963 24678999999999999999999999
Q ss_pred ecCCccc
Q 018707 315 RGSNECG 321 (351)
Q Consensus 315 ~g~n~cg 321 (351)
|..-.-|
T Consensus 312 Y~ya~~g 318 (372)
T COG4870 312 YYYALNG 318 (372)
T ss_pred eeecccc
Confidence 9754444
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.92 E-value=2.1e-24 Score=208.68 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=134.8
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHHH-cCCCccCcHHHHHHhcC----------------CC----------CCCCC
Q 018707 111 ISRILDQGHCGSCWAFGAVEALSDRFCIH-FGMNLSLSVNDLLACCG----------------FL----------CGDGC 163 (351)
Q Consensus 111 v~pV~dQg~cGsCwAfA~~~~le~~~~i~-~~~~~~lS~q~l~~c~~----------------~~----------~~~gc 163 (351)
..||+||+..|.||.||++..|+..+..+ +...++||+.+++.-+. .. .....
T Consensus 54 ~~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~ 133 (437)
T cd00585 54 TEPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN 133 (437)
T ss_pred CCCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence 35899999999999999999999988774 44789999988765211 00 13456
Q ss_pred CCCChHHHHHHHHHcCcCCCCcccCCCCCCCCC-----------------------------------------------
Q 018707 164 DGGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------------------------------- 196 (351)
Q Consensus 164 ~GG~~~~a~~~~~~~Gi~~e~~~PY~~~~~~~~----------------------------------------------- 196 (351)
+||.-..+...+.++|+++.+.||-.....-+.
T Consensus 134 DGGqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 134 DGGQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCCchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999642211100
Q ss_pred ----CCCCCCC--------------CCccc-----------cccccccccc--cccceeeEee-----------eeEeCC
Q 018707 197 ----PGCEPAY--------------PTPKC-----------VRKCVKKNQL--WRNSKHYSIS-----------AYRINS 234 (351)
Q Consensus 197 ----~~c~~~~--------------~~~~~-----------~~~c~~~~~~--~~~~~~~~i~-----------~~~~~~ 234 (351)
|+..-.+ -+|.. ...|....+. ..-.+.|.+. .| +..
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y-~Nv 292 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILY-LNV 292 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceE-Eec
Confidence 1100000 00000 0000000000 0000111111 01 111
Q ss_pred cHHHHH----HHHHHCCCEEEEEEcccccccccCCeeecC---------------------CCCccCCcEEEEEEeCCCC
Q 018707 235 DPEDIM----AEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------------------TGDVMGGHAVKLIGWGTSD 289 (351)
Q Consensus 235 ~~~~ik----~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~---------------------~~~~~~~Hav~iVGyg~~~ 289 (351)
..+.++ ++|.+++||.++.++. .|..|++||+... ++....+|||+|||||.++
T Consensus 293 p~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~ 371 (437)
T cd00585 293 PMDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDE 371 (437)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecC
Confidence 245555 6778899999999996 5779999999543 2233458999999999666
Q ss_pred CCc-cEEEEEccCCCCCCCCceEEEEec
Q 018707 290 DGE-DYWILANQWNRSWGADGYFKIKRG 316 (351)
Q Consensus 290 ~g~-~ywivkNSWG~~WG~~Gy~~i~~g 316 (351)
+|+ .||+||||||+.||++||++|+++
T Consensus 372 ~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 372 DGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCCcceEEEEcccCCCCCCCcceehhHH
Confidence 676 699999999999999999999975
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.68 E-value=2.7e-16 Score=152.49 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=113.1
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHHHcC-CCccCcHHHHHH----------------hcCCC----------CCCCC
Q 018707 111 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLA----------------CCGFL----------CGDGC 163 (351)
Q Consensus 111 v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~-~~~~lS~q~l~~----------------c~~~~----------~~~gc 163 (351)
..||.||...|.||.||++..++..+..+.+ ..++||+.++.. +.... .....
T Consensus 55 ~~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~ 134 (438)
T PF03051_consen 55 TGPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS 134 (438)
T ss_dssp S-S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred cCCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence 4589999999999999999999999988776 889999988752 21100 02346
Q ss_pred CCCChHHHHHHHHHcCcCCCCcccCCCCCCCCC-----------------------------------------------
Q 018707 164 DGGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------------------------------- 196 (351)
Q Consensus 164 ~GG~~~~a~~~~~~~Gi~~e~~~PY~~~~~~~~----------------------------------------------- 196 (351)
+||.-..+...++++|+++.+.||-.....-+.
T Consensus 135 DGGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 135 DGGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp S-B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999743311111
Q ss_pred ----CCCCCCCC--------------Cccc--ccccc---------cccc--ccccceeeEee------------eeEeC
Q 018707 197 ----PGCEPAYP--------------TPKC--VRKCV---------KKNQ--LWRNSKHYSIS------------AYRIN 233 (351)
Q Consensus 197 ----~~c~~~~~--------------~~~~--~~~c~---------~~~~--~~~~~~~~~i~------------~~~~~ 233 (351)
|+.+-.+. +|.- ...+. ...+ ...-.+.|.+. -+.++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 11100000 0000 00000 0000 00000111110 01111
Q ss_pred Cc--HHHHHHHHHHCCCEEEEEEcccccccccCCeeecCC---------------------CCccCCcEEEEEEeCCCCC
Q 018707 234 SD--PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT---------------------GDVMGGHAVKLIGWGTSDD 290 (351)
Q Consensus 234 ~~--~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~---------------------~~~~~~Hav~iVGyg~~~~ 290 (351)
-+ .+.+.++|.++-||-.+-++... ...+.||.+... .....+|||+|||.+.+++
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~k~-~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~ 373 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVGKF-FDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDED 373 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETTTT-EETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCCcc-ccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccC
Confidence 11 13456667778899999999754 466788865321 1123589999999997778
Q ss_pred Cc-cEEEEEccCCCCCCCCceEEEEec
Q 018707 291 GE-DYWILANQWNRSWGADGYFKIKRG 316 (351)
Q Consensus 291 g~-~ywivkNSWG~~WG~~Gy~~i~~g 316 (351)
|+ .+|+|+||||++.|.+|||.|+..
T Consensus 374 g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 374 GKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp SSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 87 699999999999999999999853
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.90 E-value=1.1e-08 Score=93.72 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=55.1
Q ss_pred cHHHHHHH----HHHCCCEEEEEEcccccccccCCeeec-----C-------C---------CCccCCcEEEEEEeCCCC
Q 018707 235 DPEDIMAE----IYKNGPVEVSFTVYEDFAHYKSGVYKH-----I-------T---------GDVMGGHAVKLIGWGTSD 289 (351)
Q Consensus 235 ~~~~ik~~----l~~~gPV~v~~~~~~~f~~y~~Giy~~-----~-------~---------~~~~~~Hav~iVGyg~~~ 289 (351)
+.+.+|++ +.++-+|=.+-++. -+..-+.||... + . +...-.|||+|.|.+-++
T Consensus 296 ~me~lkkl~~~q~qagetVwFG~dvg-q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 296 DMERLKKLAIKQMQAGETVWFGCDVG-QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred cHHHHHHHHHHHHhcCCcEEeecCch-hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 34555543 34466888888874 355556666431 1 0 111247999999999777
Q ss_pred CCc-cEEEEEccCCCCCCCCceEEEE
Q 018707 290 DGE-DYWILANQWNRSWGADGYFKIK 314 (351)
Q Consensus 290 ~g~-~ywivkNSWG~~WG~~Gy~~i~ 314 (351)
+|. --|.|.||||.+=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 764 4899999999999999999876
No 21
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=98.02 E-value=5.2e-06 Score=58.06 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=35.0
Q ss_pred hhhcccccccchHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHH
Q 018707 25 VSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQF 67 (351)
Q Consensus 25 ~~~~~~~~~~~~~~--~i~~~n~~~~~~~~~~~n~~F~d~t~~E~ 67 (351)
..+...|+.+|..+ .|+++|+.+..+|++++| +|+|||.+||
T Consensus 15 ~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N-~fsD~t~eEf 58 (58)
T PF08246_consen 15 AEEEARRFAIFKENLRRIEEHNANGNNTYKLGLN-QFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SS-TTTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCc-cccCcChhhC
Confidence 45677778888776 799999767889999999 9999999997
No 22
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=97.73 E-value=3.6e-05 Score=49.48 Aligned_cols=39 Identities=44% Similarity=0.786 Sum_probs=26.9
Q ss_pred hHHHHHHHHcCCCCCeEEecCCCCCCCCHHHHHHHhCCCCCC
Q 018707 36 QDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTP 77 (351)
Q Consensus 36 ~~~~i~~~n~~~~~~~~~~~n~~F~d~t~~E~~~~~~~~~~~ 77 (351)
.+++|+.||+. +.+|++|.| |.+.+.+++++++|..+.+
T Consensus 2 sde~I~~IN~~-~~tWkAG~N--F~~~~~~~ik~LlGv~~~~ 40 (41)
T PF08127_consen 2 SDEFIDYINSK-NTTWKAGRN--FENTSIEYIKRLLGVLPDP 40 (41)
T ss_dssp -HHHHHHHHHC-T-SEEE------SSB-HHHHHHCS-B-TTS
T ss_pred CHHHHHHHHcC-CCcccCCCC--CCCCCHHHHHHHcCCCCCC
Confidence 57899999996 789999999 7999999999999987643
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.57 E-value=6.9e-05 Score=69.02 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHHHcC-CCccCcHHHHHH--------------------hcCCC--------CCC
Q 018707 111 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLA--------------------CCGFL--------CGD 161 (351)
Q Consensus 111 v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~-~~~~lS~q~l~~--------------------c~~~~--------~~~ 161 (351)
-+||.||..-|-||.|+.+..+--.+..+-+ ....||..+|+- |-.-+ .+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 3699999999999999999887655544444 667888877743 11100 123
Q ss_pred CCCCCChHHHHHHHHHcCcCCCCcccCC
Q 018707 162 GCDGGYPISAWRYFVHHGVVTEECDPYF 189 (351)
Q Consensus 162 gc~GG~~~~a~~~~~~~Gi~~e~~~PY~ 189 (351)
.-+||.-..-.+.++++|+.+..|||-.
T Consensus 142 ~~DGGqw~MfvNlVkKYGviPKkcy~~s 169 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKKYGVIPKKCYLHS 169 (457)
T ss_pred CCCCchHHHHHHHHHHhCCCcHHhcccc
Confidence 4468877777888999999999999874
No 24
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=97.29 E-value=0.00011 Score=50.98 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=32.0
Q ss_pred hhcccccccchHH--HHHHHHcCCCCCeEEecCCCCCCCCHHH
Q 018707 26 SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQ 66 (351)
Q Consensus 26 ~~~~~~~~~~~~~--~i~~~n~~~~~~~~~~~n~~F~d~t~~E 66 (351)
.+...|+.+|..+ .|+.+|+.+..+|++++| +|+|||++|
T Consensus 16 ~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N-~fsDlt~eE 57 (57)
T smart00848 16 EEELRRFEIFKENLKFIEEHNKKNDHSYTLGLN-QFADLTNEE 57 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCc-ccccCCCCC
Confidence 3455666777775 789999866689999999 999999876
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.89 E-value=0.015 Score=49.36 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHH--------HHcCCCccCcHHHHHHhcCCCCCCCCCCCChHHHHHHHHHcCcCCCCccc
Q 018707 116 DQGHCGSCWAFGAVEALSDRFC--------IHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDP 187 (351)
Q Consensus 116 dQg~cGsCwAfA~~~~le~~~~--------i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~Gi~~e~~~P 187 (351)
.||.-+-|-+||.+++|-.... |.+.....+|+++|-.+.- .+...++|.+..|...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~g~~~----- 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQGRNP----- 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHTTEEE-----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHcCcch-----
Confidence 5899999999999998876532 1112345566666655532 3457777877666421
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeeE-eCCcHHHHHHHHHHCCCEEEEEEcccccccccCCe
Q 018707 188 YFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGV 266 (351)
Q Consensus 188 Y~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi 266 (351)
.+. -..+.+++++.+.++-|+.+.....+ +.
T Consensus 83 -----------------------------------------~~~n~~~s~~eV~~~~~~nk~i~i~~~~v~------~~- 114 (175)
T PF05543_consen 83 -----------------------------------------QYNNRMPSFDEVKKLIDNNKGIAILADRVE------QT- 114 (175)
T ss_dssp -----------------------------------------EEECS---HHHHHHHHHTT-EEEEEEEETT------SC-
T ss_pred -----------------------------------------hHhcCCCCHHHHHHHHHcCCCeEEEecccc------cC-
Confidence 111 11245889999988888888665321 11
Q ss_pred eecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCC
Q 018707 267 YKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRS 304 (351)
Q Consensus 267 y~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~ 304 (351)
.....+||++||||-.-.+|.++.++=|=|-.+
T Consensus 115 -----~~~~~gHAlavvGya~~~~g~~~y~~WNPW~~~ 147 (175)
T PF05543_consen 115 -----NGPHAGHALAVVGYAKPNNGQKTYYFWNPWWND 147 (175)
T ss_dssp -----TTB--EEEEEEEEEEEETTSEEEEEEE-TT-SS
T ss_pred -----CCCccceeEEEEeeeecCCCCeEEEEeCCccCC
Confidence 112258999999998446679999999998654
No 26
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.89 E-value=0.013 Score=47.72 Aligned_cols=58 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccC
Q 018707 234 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 301 (351)
Q Consensus 234 ~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 301 (351)
.+.+.|+++|.++.||++.+...-. ...+..+.. ..++|.|+|+||+ + ++ +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~--~~~~~~~~~----~~~~H~vvi~Gy~-~-~~--~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWR--PPNGDGYDG----TYGGHYVVIIGYD-E-DG--YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS----TTEEEEE-----TTEEEEEEEEE--S-SE---EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccc--cCCCCCcCC----CcCCEEEEEEEEe-C-CC--EEEEeCCC
Confidence 3568999999999999999984210 001112211 2258999999998 2 22 78888776
No 27
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.58 E-value=0.78 Score=39.25 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=37.2
Q ss_pred CCcHHHHHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCC
Q 018707 233 NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWN 302 (351)
Q Consensus 233 ~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 302 (351)
..+..+|+..|.++.||.+-... |-. ..-|+|+|+||| +.++..-+.||
T Consensus 120 Gksl~~ik~ql~kg~PV~iw~T~---~~~-------------~s~H~v~itgyD-----k~n~yynDpyG 168 (195)
T COG4990 120 GKSLSDIKGQLLKGRPVVIWVTN---FHS-------------YSIHSVLITGYD-----KYNIYYNDPYG 168 (195)
T ss_pred CCcHHHHHHHHhcCCcEEEEEec---ccc-------------cceeeeEeeccc-----ccceEeccccc
Confidence 34789999999999999887764 221 236999999999 45666777775
No 28
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=89.45 E-value=1.3 Score=39.25 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHCCCEEEEEEcccccc--cccCCeee----cCC--CCccCCcEEEEEEeCCCCCCccEEEEEc
Q 018707 234 SDPEDIMAEIYKNGPVEVSFTVYEDFA--HYKSGVYK----HIT--GDVMGGHAVKLIGWGTSDDGEDYWILAN 299 (351)
Q Consensus 234 ~~~~~ik~~l~~~gPV~v~~~~~~~f~--~y~~Giy~----~~~--~~~~~~Hav~iVGyg~~~~g~~ywivkN 299 (351)
-..++|..+|..+||+++-++..- .. .-++-... ... .....+|-|+|+||+ ...+-+++||
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~~-L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd---~~~~~~~yrd 180 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDASL-LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYD---AATKEFEYRD 180 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEcccc-ccChhhcccccccccccccCCCCCccEEEEEEEeec---CCCCeEEEeC
Confidence 367999999999998888888631 00 00111111 111 123468999999998 3344566665
No 29
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=89.31 E-value=0.98 Score=42.40 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEe
Q 018707 236 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKR 315 (351)
Q Consensus 236 ~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~ 315 (351)
.+.|+++|.++.||.+.++.+ +..|...-| .....+|.|+|+||+ + ++..+.++-+ ....+.++++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~----~~~~~~H~i~v~G~d-~-~~~~~~v~D~------~~~~~~~~~~ 143 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY--YLPYRPNYY----KKHHADHYIVVYGYD-E-EEDVFYVSDP------PSYEPGRLPY 143 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc--cCCCCcccc----ccccCCcEEEEEEEe-C-CCCEEEEEcC------CCCcceeecH
Confidence 468899998888999998874 233433322 222358999999998 3 3455666533 3334455554
No 30
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=84.67 E-value=20 Score=30.18 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeC
Q 018707 235 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWG 286 (351)
Q Consensus 235 ~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg 286 (351)
..+.+...|.++||+-++.... +.....|+++|.|-+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~ 133 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP---------------GDSWVAHASVITGID 133 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeec
Confidence 3488999999999999985542 222246999999986
No 31
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=72.54 E-value=12 Score=30.14 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=30.9
Q ss_pred HHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccC
Q 018707 239 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 301 (351)
Q Consensus 239 ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 301 (351)
+++.|.+..||++.++.. . .....+|.|+|+||+ . .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---------~-----~~~~~gH~vVv~g~~-~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---------V-----SITPSGHAMVVIGYD-R---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---------c-----ccCCCCeEEEEEEEc-C---CCCEEEECCC
Confidence 778888899999988751 0 111258999999997 1 2335566665
No 32
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=69.87 E-value=10 Score=35.69 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.5
Q ss_pred cCCcEEEEEEeCCCCC--CccEEEEEccCCC
Q 018707 275 MGGHAVKLIGWGTSDD--GEDYWILANQWNR 303 (351)
Q Consensus 275 ~~~Hav~iVGyg~~~~--g~~ywivkNSWG~ 303 (351)
..+||-.|++.. .-+ +.+...+||-||.
T Consensus 234 ~~~HaY~Vl~~~-~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVR-EVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEE-EEccCceEEEEecCCccC
Confidence 368999999997 434 7889999999994
No 33
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=54.06 E-value=11 Score=28.09 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=10.6
Q ss_pred CCCcchhHHHHHHHHHH
Q 018707 1 MEPTKLIMDPILCLTCF 17 (351)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (351)
||..|++++++++++++
T Consensus 1 MKK~kii~iii~li~i~ 17 (85)
T PF11337_consen 1 MKKKKIILIIIILIVIS 17 (85)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 88766666655555543
No 34
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=53.72 E-value=18 Score=21.63 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=14.3
Q ss_pred CCCcchhHHHHHHHHHHHHhhhh
Q 018707 1 MEPTKLIMDPILCLTCFATFAEG 23 (351)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (351)
|| |+.++|++.-..|..|-.-
T Consensus 1 MK--kl~i~L~l~ga~f~~fKKy 21 (33)
T PF10855_consen 1 MK--KLAIILILGGAAFYGFKKY 21 (33)
T ss_pred CC--ceeehhhhhhHHHHHHHHH
Confidence 66 6777777777777666544
No 35
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=50.69 E-value=65 Score=27.98 Aligned_cols=50 Identities=34% Similarity=0.725 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCEEEEEEcccccccccCCeeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCC--CCceEE
Q 018707 237 EDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWG--ADGYFK 312 (351)
Q Consensus 237 ~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG--~~Gy~~ 312 (351)
+.|+.+|.++.||...-.-. ++ +||.+|=||. ...||-+ -|| || .+|||+
T Consensus 141 ~~i~~el~~~rPV~~~g~~~-------~~-----------GHawViDGy~----~~~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK-------SG-----------GHAWVIDGYD----SDGYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET-------TE-----------EEEEEEEEEE----SSSEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC-------CC-----------CeEEEEcCcc----CCCeEEE--eeC--ccCCCCCccC
Confidence 57888999999998654321 11 8999999996 2446644 455 44 578875
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.23 E-value=14 Score=28.42 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=6.9
Q ss_pred CCCcchhHHHHHHHHHH
Q 018707 1 MEPTKLIMDPILCLTCF 17 (351)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (351)
|- .|.+++|.|++.++
T Consensus 1 Ma-SK~~llL~l~LA~l 16 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAAL 16 (95)
T ss_pred Cc-hhHHHHHHHHHHHH
Confidence 55 34444443443333
No 37
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=37.90 E-value=19 Score=23.31 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=8.8
Q ss_pred CCCcchhHHHHHHHHH
Q 018707 1 MEPTKLIMDPILCLTC 16 (351)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (351)
|| |++++.++++.+
T Consensus 1 Mk--Ki~~~~i~~~~~ 14 (46)
T PF02402_consen 1 MK--KIIFIGIFLLTM 14 (46)
T ss_pred Cc--EEEEeHHHHHHH
Confidence 78 666666665553
No 38
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=37.26 E-value=90 Score=29.46 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=21.7
Q ss_pred cCCcEEEEEEeCCCCCCcc--EEEEEccCCC
Q 018707 275 MGGHAVKLIGWGTSDDGED--YWILANQWNR 303 (351)
Q Consensus 275 ~~~Hav~iVGyg~~~~g~~--ywivkNSWG~ 303 (351)
..+||-.|++.. .-++.+ -..+||-||.
T Consensus 226 v~~HaYsVl~v~-~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVR-EVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEE-EEecCCeEEEEEECCCCC
Confidence 368999999987 334445 8999999993
No 39
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=33.72 E-value=45 Score=30.96 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=19.5
Q ss_pred cCCcEEEEEEeCCCC---CCccEEEEEccCCC
Q 018707 275 MGGHAVKLIGWGTSD---DGEDYWILANQWNR 303 (351)
Q Consensus 275 ~~~Hav~iVGyg~~~---~g~~ywivkNSWG~ 303 (351)
..+||-.|++..... .+...-.+||-||.
T Consensus 212 ~~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 212 VPGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp BTTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred ccceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 369999999987321 12567789999995
No 40
>PF15588 Imm7: Immunity protein 7
Probab=28.73 E-value=2.4e+02 Score=22.28 Aligned_cols=33 Identities=27% Similarity=0.718 Sum_probs=24.3
Q ss_pred EEEEEEeCCCC-CCccEEEEEccC-----CCCCCCCceE
Q 018707 279 AVKLIGWGTSD-DGEDYWILANQW-----NRSWGADGYF 311 (351)
Q Consensus 279 av~iVGyg~~~-~g~~ywivkNSW-----G~~WG~~Gy~ 311 (351)
-|++||+++++ +.+.|.|++.+- ...=|.+||+
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~ 55 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY 55 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE
Confidence 39999999765 446799999863 4445668886
No 41
>PF15284 PAGK: Phage-encoded virulence factor
Probab=28.36 E-value=45 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=16.4
Q ss_pred CCCcchhHHHHHHHHHHHHhhhh
Q 018707 1 MEPTKLIMDPILCLTCFATFAEG 23 (351)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (351)
||.-|-|++.+++++....|...
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSas 23 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSAS 23 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHH
Confidence 88777777777777666666555
No 42
>KOG4621 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=2.5e+02 Score=22.81 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHCCCEEEEEEccc----ccc--cccCCeeecCC----C--CccCCcEEEEEEeCCCCCCccEEEEEccCC
Q 018707 235 DPEDIMAEIYKNGPVEVSFTVYE----DFA--HYKSGVYKHIT----G--DVMGGHAVKLIGWGTSDDGEDYWILANQWN 302 (351)
Q Consensus 235 ~~~~ik~~l~~~gPV~v~~~~~~----~f~--~y~~Giy~~~~----~--~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 302 (351)
.+.+|...|+++.-|++.+--.. ++- ..+++.+.+.. + ....+|-|+|-||+ ...+-+.++|-
T Consensus 58 Si~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd---~a~~c~~~ndP-- 132 (167)
T KOG4621|consen 58 SIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYD---AARDCFEINDP-- 132 (167)
T ss_pred eHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEeccc---cccCeEEEcCc--
Confidence 56889999988667776643211 111 13445443221 1 12368999999998 34556666653
Q ss_pred CCCCCCceEEEE
Q 018707 303 RSWGADGYFKIK 314 (351)
Q Consensus 303 ~~WG~~Gy~~i~ 314 (351)
-..+-|.-|++
T Consensus 133 -A~adpg~c~~S 143 (167)
T KOG4621|consen 133 -ASADPGHCRIS 143 (167)
T ss_pred -ccCCCcceeeh
Confidence 22333455544
No 43
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.93 E-value=48 Score=17.17 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.8
Q ss_pred chhHHHHHH
Q 018707 5 KLIMDPILC 13 (351)
Q Consensus 5 ~~~~~~~~~ 13 (351)
|+++||+.+
T Consensus 3 k~vIIlvvL 11 (19)
T PF13956_consen 3 KLVIILVVL 11 (19)
T ss_pred eehHHHHHH
Confidence 344444433
No 44
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=22.67 E-value=2.6e+02 Score=19.05 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=22.2
Q ss_pred EEEEEEeCCCC-CCccEEEEE-ccCC---CCCCCCceEEEEe
Q 018707 279 AVKLIGWGTSD-DGEDYWILA-NQWN---RSWGADGYFKIKR 315 (351)
Q Consensus 279 av~iVGyg~~~-~g~~ywivk-NSWG---~~WG~~Gy~~i~~ 315 (351)
-++++|+.... ....+-++| |+=| ++||.+|..++..
T Consensus 13 kIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~~d~ 54 (55)
T TIGR02608 13 KILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVTFDL 54 (55)
T ss_pred cEEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEEEeC
Confidence 46777775221 122344443 6666 5899999988753
No 45
>PF01754 zf-A20: A20-like zinc finger; InterPro: IPR002653 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in A20. A20 is an inhibitor of cell death that inhibits NF-kappaB activation via the tumour necrosis factor receptor associated factor pathway []. The zinc finger domains appear to mediate self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 2FIF_F 2FID_B 2C7N_C 2C7M_A 2L00_A 2KZY_A 2EQG_A 2EQE_A 3OJ3_J 3OJ4_C ....
Probab=22.45 E-value=49 Score=18.73 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=14.5
Q ss_pred CCCCCCCccCCCCCCChHH
Q 018707 106 PQCSTISRILDQGHCGSCW 124 (351)
Q Consensus 106 ~~~~~v~pV~dQg~cGsCw 124 (351)
++||+...+..++.|.-||
T Consensus 6 ~gCgf~Gs~~~~~~Cs~C~ 24 (25)
T PF01754_consen 6 NGCGFYGSPATNGLCSKCY 24 (25)
T ss_dssp TTSSSB-BGGGTTS-HHHH
T ss_pred CCCCCcccccccCcchhhc
Confidence 4788888899999999887
No 46
>PRK13681 hypothetical protein; Provisional
Probab=21.34 E-value=74 Score=19.48 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=13.0
Q ss_pred CCCcchhHHHHHHHHHHHH
Q 018707 1 MEPTKLIMDPILCLTCFAT 19 (351)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (351)
|+.+|+-++-++.+..+..
T Consensus 1 M~~~K~~~i~lfalmAiGg 19 (35)
T PRK13681 1 MRIAKIGVIALFLLMAIGG 19 (35)
T ss_pred CcHHHHHHHHHHHHHHhcC
Confidence 7888887777666665543
Done!