Query 018709
Match_columns 351
No_of_seqs 134 out of 619
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02923 AhaC ATP synthase A1 100.0 1.1E-60 2.4E-65 454.3 34.7 333 11-348 3-343 (343)
2 PF01992 vATP-synt_AC39: ATP s 100.0 1.1E-61 2.4E-66 460.1 19.6 330 15-348 1-337 (337)
3 PRK01198 V-type ATP synthase s 100.0 5.8E-59 1.3E-63 444.0 33.9 338 7-348 5-351 (352)
4 COG1527 NtpC Archaeal/vacuolar 100.0 8.1E-59 1.8E-63 431.7 31.0 333 11-349 7-345 (346)
5 KOG2957 Vacuolar H+-ATPase V0 100.0 1.5E-54 3.4E-59 380.9 27.5 350 1-350 1-350 (350)
6 PRK01198 V-type ATP synthase s 99.9 7.8E-26 1.7E-30 215.8 22.0 214 26-242 132-351 (352)
7 TIGR02923 AhaC ATP synthase A1 99.9 8E-24 1.7E-28 201.3 21.3 206 137-348 24-232 (343)
8 COG1527 NtpC Archaeal/vacuolar 99.8 2.2E-17 4.7E-22 154.4 20.3 211 30-243 129-345 (346)
9 PF01992 vATP-synt_AC39: ATP s 99.8 2.1E-18 4.6E-23 163.6 9.1 211 29-242 121-337 (337)
10 PF10962 DUF2764: Protein of u 98.6 8.7E-07 1.9E-11 80.3 14.5 204 87-323 34-244 (271)
11 KOG2957 Vacuolar H+-ATPase V0 92.2 6.3 0.00014 36.4 13.7 136 137-281 32-168 (350)
12 PF10962 DUF2764: Protein of u 61.2 1.4E+02 0.0029 27.5 11.5 122 200-339 36-161 (271)
13 PRK14082 hypothetical protein; 47.4 63 0.0014 22.6 4.9 56 31-100 9-64 (65)
14 PF13986 DUF4224: Domain of un 23.9 88 0.0019 20.4 2.5 32 27-58 2-33 (47)
15 PF09278 MerR-DNA-bind: MerR, 22.0 55 0.0012 22.4 1.4 23 325-347 1-24 (65)
No 1
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=100.00 E-value=1.1e-60 Score=454.29 Aligned_cols=333 Identities=20% Similarity=0.257 Sum_probs=308.1
Q ss_pred CCcchHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhc
Q 018709 11 IHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPS-PLHTTTIVEKCTLKLVDEYKHMLCQA 89 (351)
Q Consensus 11 ~~y~~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~-~~~~~~lE~~L~~~l~~~~~~l~~~~ 89 (351)
.+|+|+|||||+|++++|++++|++|++++|++|++++|++|+|++.+.++.. ..++.++|.+|++++++.|..+.+++
T Consensus 3 ~~Y~~~~arvr~~~~~lL~~~~~~~L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~ 82 (343)
T TIGR02923 3 SPYAYPNARVRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYGVDLIEHALDANLAKTYEKLFRIS 82 (343)
T ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHhcCCChHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999988643 46899999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhhhhhh
Q 018709 90 TEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSEC 167 (351)
Q Consensus 90 ~~~~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~ 167 (351)
|++.+++++.+..+||+||||+++|++..|++.+++.+.++|.|.++ .++.+++++|++++++.| .+|+|+++++++
T Consensus 83 ~~~~~~~~~~~~~~~di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~~L-~~t~y~~~l~~~ 161 (343)
T TIGR02923 83 PGASRDLIRLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEAL-EGTPYYGPLQEA 161 (343)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHHHc-CCCccHHHHHHH
Confidence 99989999999999999999999999999999999988899999988 599999999999999999 999999999998
Q ss_pred hcccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccCCc-c
Q 018709 168 ITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFG-L 246 (351)
Q Consensus 168 ~~~~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~~g-~ 246 (351)
+ . ++++++.+|.+||++||+++++.++..++.+.+.+.++++.+||+.||+|++|+|++|++++++.++++||| .
T Consensus 162 ~-~---~~~~l~~~E~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~ 237 (343)
T TIGR02923 162 L-A---GNGDLSPIENELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYE 237 (343)
T ss_pred H-h---cCCCHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhccCcccc
Confidence 7 2 458999999999999999999998865556678999999999999999999999999999999999999999 7
Q ss_pred cChhhHHhcccCCCHHHHHHHhhcCcchhHhhhhhc--cCCcchHHHHHHHHHHHHHH-HHhhcCCchHHHHHHHHHHHH
Q 018709 247 LYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLS--YGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQ 323 (351)
Q Consensus 247 l~~~~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~--~~~~~~lE~~~~~~~~~~~~-~~~~~~~~~~~i~aYl~~ke~ 323 (351)
++++.+.+|+++++.+++.+.|++|+|+..+.++.+ .++...+|+.++++++..++ .++..|||++|+++|+++||+
T Consensus 238 l~~~~l~~l~~~~~~~~~~~~l~~t~y~~~l~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke~ 317 (343)
T TIGR02923 238 LDEEKLAPLAHIESIDEVVSALDGTKYGEDISEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKER 317 (343)
T ss_pred cCHHHHHHHHcCCCHHHHHHHHhcCcchHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 799999999999999999999999998765554432 34567999999999999997 589999999999999999999
Q ss_pred HHHhHHHHHHHHhhchh-hhhccccc
Q 018709 324 EIRNLMWISECVAQNQK-SRVHDSVV 348 (351)
Q Consensus 324 Ei~nLr~I~eg~~~~~~-~~i~~~~~ 348 (351)
||+|||+|++|+++|++ ++|++.++
T Consensus 318 Ei~nlr~I~~gk~~~l~~e~I~~~l~ 343 (343)
T TIGR02923 318 EVRNLRAIARGKEEGLPPEEIKEQLV 343 (343)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence 99999999999999986 99988764
No 2
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=100.00 E-value=1.1e-61 Score=460.09 Aligned_cols=330 Identities=26% Similarity=0.382 Sum_probs=260.9
Q ss_pred hHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q 018709 15 YLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLS 94 (351)
Q Consensus 15 ~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~~~~~~~lE~~L~~~l~~~~~~l~~~~~~~~~ 94 (351)
|+|||||||+++||++++|++|++|+|++|+...|++|+|++.+++.....|++++|.+|++++.++|..+.+++|++.+
T Consensus 1 Y~~arvra~~~~lL~~~~~~~L~~~~~~~~~~~~l~~t~Y~~~l~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~ 80 (337)
T PF01992_consen 1 YVNARVRAMEAKLLTKEDYEELLEAESVEEAVSLLEDTGYGDYLEEVSSEIHRRDIEQALRRELFKEFQKLLRFAPGEAK 80 (337)
T ss_dssp HHHHHHHHHGGGS--HHHHHHHTTS-HHHHHHHHHTS-GGGGG--SSSHH----HHHHHHHHHHHHHTTTGGGG--HHHH
T ss_pred ChhHhHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHhcccHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 89999999999999999999999999999999999999999999887633689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcccc
Q 018709 95 TFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSED 172 (351)
Q Consensus 95 ~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~~~ 172 (351)
.|+++++.+||+||||+++|++.+|++.+++...++|+| ++ .+..|++++|++|+++.| +||||+++++++...+
T Consensus 81 ~~~~~~~~r~ei~nik~ilr~~~~g~~~~~~~~~l~~~g-~~~~~l~~l~~~~~~~e~~~~L-~~t~y~~~l~~~~~~~- 157 (337)
T PF01992_consen 81 EFLDAYLMRYEIHNIKTILRAKLSGRDLEEILELLIPLG-FSFEDLKELLSAKDVEELIEAL-KGTPYYEVLRQALEDY- 157 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--GGGS---S-SS--HHHHHHHHSSSHHHHHHHH-HT-TT-THHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhccccC-CChhhHHHHhccCCHHHHHHHh-cCcchHHHHHHHHHhh-
Confidence 999999999999999999999999999999888899999 55 799999999999999999 9999999999998754
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccCCcccChhhH
Q 018709 173 LDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGH 252 (351)
Q Consensus 173 ~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~~g~l~~~~l 252 (351)
+..++..++..||+.||.++++.+.++++.+++.++++++.+||+.||+|++|+|++|++++++..++|+||+++++.+
T Consensus 158 -~~~~~~~~~~~l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l 236 (337)
T PF01992_consen 158 -EQQDFFYIEEALDDRYYEDLLKAAKKLSGSEREILRELLGMEIDLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRL 236 (337)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHH---TSS-HHHHHHHHHHHHHHHHHHHHHTTTS---GGGT-----SS-SS--H-H
T ss_pred -cccchHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHH
Confidence 5578888999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCHHHHHHHhhcCcchhHhhhhhcc-C--CcchHHHHHHHHHHHHHH-HHhhcCCchHHHHHHHHHHHHHHHhH
Q 018709 253 EELAVCEDIDQVRGVMEKYPPYQSIFSKLSY-G--ESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNL 328 (351)
Q Consensus 253 ~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~~-~--~~~~lE~~~~~~~~~~~~-~~~~~~~~~~~i~aYl~~ke~Ei~nL 328 (351)
.+|+++++.+++.+.+++|+|+..+...... . +...+|+.+++++++.+. .++.+|||++|++||+++||.||+||
T Consensus 237 ~~l~~~~~~~~~~~~l~~t~y~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL 316 (337)
T PF01992_consen 237 KALAEAEDVEEFLEALSGTPYGKLLSDAEEEYEETSLSELERALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRNL 316 (337)
T ss_dssp HHHHHHTT-GGGGGS-TTSTTGGGTT--S-------HHHHHHHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcCchHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987665444321 1 257899999999999554 88899999999999999999999999
Q ss_pred HHHHHHHhhchh-hhhccccc
Q 018709 329 MWISECVAQNQK-SRVHDSVV 348 (351)
Q Consensus 329 r~I~eg~~~~~~-~~i~~~~~ 348 (351)
|+|++||++|++ ++|++++|
T Consensus 317 ~~I~~g~~~gl~~e~I~~~lv 337 (337)
T PF01992_consen 317 RTIIEGKRYGLSPEEIRERLV 337 (337)
T ss_dssp HHHHHHHHHT--CHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHhhcC
Confidence 999999999987 99999987
No 3
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=100.00 E-value=5.8e-59 Score=444.00 Aligned_cols=338 Identities=20% Similarity=0.257 Sum_probs=311.9
Q ss_pred ccccCCcchHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 018709 7 MTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPS-PLHTTTIVEKCTLKLVDEYKHM 85 (351)
Q Consensus 7 ~~~~~~y~~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~-~~~~~~lE~~L~~~l~~~~~~l 85 (351)
+|...+|+|++||||||++++|++++|++|++|+|++|++++|++|+|++.+.++.+ ..|++++|.+|++++.+.|..+
T Consensus 5 ~~~~~~y~~~~~rira~~~~lL~~~~~~~L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~~E~~L~~~l~~~~~~l 84 (352)
T PRK01198 5 MMDSAPYAYVNARVRVREAKLLDREKYERLLEMKSLEEIIRFLEETEYKEEIDELGSRYSGPDLIEKALNRNLAKTYELL 84 (352)
T ss_pred ccCCCCCcchHHHHHHHHHccCCHHHHHHHHhCCCHHHHHHHHhcCCcHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Confidence 556689999999999999999999999999999999999999999999999988754 3589999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhh
Q 018709 86 LCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPY 163 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~ 163 (351)
.+++|++.+.|++++..+||+||||+++|++..|++.+++.+.++|.|.++ .++.|++++|++|+++.| ++|+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~di~NIk~ilr~~~~g~~~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~L-~~T~Y~~~ 163 (352)
T PRK01198 85 LEISPGRLKELVDVYLRKWDIHNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKIL-EGTEYYEV 163 (352)
T ss_pred HHHCcchHHHHHHHHHHHHhHHHHHHHHHHHHhCCChHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHHh-cCCchHHH
Confidence 999999889999999999999999999999999999999888899999998 799999999999999999 99999999
Q ss_pred hhhhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccC
Q 018709 164 FSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSN 243 (351)
Q Consensus 164 l~~~~~~~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~ 243 (351)
++++...+. ++++++.+|.+||++||+++++.+ +..+.+.+.+.++++.+||+.||+|++|+|++|++++++.++++|
T Consensus 164 l~~~~~~~~-~~~~~~~~E~~Ld~~~~~~l~~~~-~~~~~~~~~l~~~~~~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~ 241 (352)
T PRK01198 164 LEEALEDYE-ETGDLQPIENALDKYYYENLLEIA-SPKDIDEKLLLEYVRTEIDITNIKTLLRLKAQGLSADFIEKVLIP 241 (352)
T ss_pred HHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHccC
Confidence 999887652 458999999999999999999999 444455678999999999999999999999999999999999999
Q ss_pred CcccChhhHHhcccCCCHHHHHHHhhcCcchhHhhhhhc----cCCcchHHHHHHHHHHHHHH-HHhhcCCchHHHHHHH
Q 018709 244 FGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLS----YGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYM 318 (351)
Q Consensus 244 ~g~l~~~~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~----~~~~~~lE~~~~~~~~~~~~-~~~~~~~~~~~i~aYl 318 (351)
||+++++.+.+|+ +++.+++.+.|++|+|+..+.++.. .++...+|..++++.++.++ .+++.|+|++++++|+
T Consensus 242 ~g~i~~~~l~~l~-~~~~~~~~~~L~~t~y~~~l~~~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl 320 (352)
T PRK01198 242 GGSLDEEKLKELL-AEDIEELVSALEGTKYGDVLSEALEEYEETGSLSVFEKALDNYLLEYMKKLSKRYPFSVEPILGYI 320 (352)
T ss_pred CCCcCHHHHHHHh-cCCHHHHHHHHhcCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCcCCCChHHHHHHH
Confidence 9999999999999 9999999999999998776655532 23567999999999999998 6888999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhchh-hhhccccc
Q 018709 319 RLREQEIRNLMWISECVAQNQK-SRVHDSVV 348 (351)
Q Consensus 319 ~~ke~Ei~nLr~I~eg~~~~~~-~~i~~~~~ 348 (351)
+++|+|++|||+|++|+++|++ ++|+++++
T Consensus 321 ~~~e~Ei~NL~~I~~gk~~~~~~e~I~~~L~ 351 (352)
T PRK01198 321 LAKEREVKNLRIIARGKENGLSPEEIRERLV 351 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999976 99998875
No 4
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=100.00 E-value=8.1e-59 Score=431.69 Aligned_cols=333 Identities=26% Similarity=0.360 Sum_probs=306.2
Q ss_pred CCcchHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 018709 11 IHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQAT 90 (351)
Q Consensus 11 ~~y~~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~~~~~~~lE~~L~~~l~~~~~~l~~~~~ 90 (351)
..|+|+|||||||+++||++++|++|++|+|.+|++.+|++|+|++.++++++ .++.++|.+|.++|+++|+.+...+|
T Consensus 7 ~~y~y~~~RIr~~e~~lL~~e~~~~Ll~~~~lee~~~~L~~T~Y~~~~d~l~~-~~~~~le~aL~~~L~~~~~~i~~~sp 85 (346)
T COG1527 7 APYAYPNARIRVMEARLLTDEQYSELLEAESLEEFARVLEETDYKEDLDSLTS-LGPDLLEKALNRKLVDTYRLILRISP 85 (346)
T ss_pred ccccccchhHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHhcCCchhHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 56999999999999999999999999999999999999999999999998876 58999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCcchhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcc
Q 018709 91 EPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITS 170 (351)
Q Consensus 91 ~~~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~ 170 (351)
+..+.+++.++.+||+||||+++|+|++| +.+++...++|+|.++.+..+..++|++++++.+ .+|+|.+++..+...
T Consensus 86 ~~~k~~i~~~l~k~di~NIk~li~ak~~g-~~~~~~~~liP~G~~~~~~~l~~a~t~eev~~~~-~~~~y~~~~~~~~~~ 163 (346)
T COG1527 86 GSIKKLIDAYLYKWDIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVETL-EGTTYLAPLEEALRD 163 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CccchHHhcCcCchHHHHHHHHhhcchHHHHHHH-hcCchhHHHHHHHHH
Confidence 99999999999999999999999999999 8888888999999877999999999999999999 999999999865544
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccCCcccChh
Q 018709 171 EDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPY 250 (351)
Q Consensus 171 ~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~~g~l~~~ 250 (351)
+ .+++++..+|..|||+||+++++.+....++ +++.++++++||+.||.+++|+|.++.+.+.+..++++||+|+++
T Consensus 164 y-~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~~--~~~~~~~~~eID~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~ 240 (346)
T COG1527 164 Y-EDTGDIEPLENALDKAYYEDLLRSVNSEKGD--ELLREFLRLEIDRRNIKTALRGKASELSEELMESLIPDGGSLDAS 240 (346)
T ss_pred H-hhcCCHHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHH
Confidence 4 3669999999999999999999999876553 389999999999999999999999999999999999999999999
Q ss_pred hHHhcccCCCHHHHHHHhhcCcchhHhhhhhcc---C-CcchHHHHHHHHHHHHHH-HHhhcCCchHHHHHHHHHHHHHH
Q 018709 251 GHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY---G-ESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEI 325 (351)
Q Consensus 251 ~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~~---~-~~~~lE~~~~~~~~~~~~-~~~~~~~~~~~i~aYl~~ke~Ei 325 (351)
.+..|++++|+..+.+.+++|+|+..+.+.... + .....|..+++++.+..+ .+++.|+|++|+++|+..||+||
T Consensus 241 ~~~~l~~~ed~~~~~~~l~~t~yg~~l~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~a~~~p~s~~~v~~yl~~KE~EV 320 (346)
T COG1527 241 ALRDLAEAEDILDVLEALEGTSYGDALSEYREEYEEGGSIAVFEEALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEV 320 (346)
T ss_pred HHHHHHhcccHHHHHHHcccCchHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877766532 2 234666778999988888 78899999999999999999999
Q ss_pred HhHHHHHHHHhhchh-hhhcccccc
Q 018709 326 RNLMWISECVAQNQK-SRVHDSVVF 349 (351)
Q Consensus 326 ~nLr~I~eg~~~~~~-~~i~~~~~~ 349 (351)
+|||||++|+.+|+| ++|++.++.
T Consensus 321 ~NLr~Ia~~k~~~~~~e~i~~~~~~ 345 (346)
T COG1527 321 KNLRWIAEGKANGLPREEIKELLVP 345 (346)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 999999999999985 999988775
No 5
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=100.00 E-value=1.5e-54 Score=380.85 Aligned_cols=350 Identities=63% Similarity=1.054 Sum_probs=336.0
Q ss_pred CCCCCcccccCCcchHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCCCCCHHHHHHHHHHHHHH
Q 018709 1 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVD 80 (351)
Q Consensus 1 ~~~~~~~~~~~~y~~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~~~~~~~lE~~L~~~l~~ 80 (351)
|..|...+||.+|||+.+-|||.++++|+.++|.+|.+|+|++|+.-.|+.|+||..+...+++.+...++..++..|..
T Consensus 1 m~~~~~~~fn~~~GYle~lvrG~k~glL~~~dY~nL~QCE~LEDlki~Ls~Tdyg~fl~n~~s~lt~s~I~~~l~ekL~~ 80 (350)
T KOG2957|consen 1 MLMMEALSFNIDYGYLEALVRGKKAGLLKQADYNNLVQCENLEDLKIHLSSTDYGNFLANEPSPLTVSVIDEKLREKLVD 80 (350)
T ss_pred CCcccceEEeccccchHHHHhhhhhhhhhHHHHHHHHhhccHHHHHHhhcccccccccccCCCCCcHHHHHHHHHHHHHH
Confidence 55677788999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCcchhHHHhcCCHHHHHHHhhhCCCC
Q 018709 81 EYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPL 160 (351)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~~l~~L~~~~~~~el~~~l~~~t~y 160 (351)
+|..++..+.++.+.|++++..-|.|+|+-.++-+...+++..++.++++|+|+|+.+.++.-+.|..|++++++-+||.
T Consensus 81 ef~h~R~~a~epl~tfldyity~ymIdNv~lLitgtl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpl 160 (350)
T KOG2957|consen 81 EFDHIRDQADEPLSTFLDYITYGYMIDNVILLITGTLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPL 160 (350)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhHHHHHHhccccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred hhhhhhhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhcc
Q 018709 161 APYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240 (351)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~ 240 (351)
++++.+.+++.++++.+++.+.+.|.|+|++..++.++++++.+.+.+.++++.+.|.+-|.+.+++....++++.+..+
T Consensus 161 a~~F~dc~~~~dld~mniEIiRn~lYKaylE~fY~fc~~~g~~tae~M~~iL~fEaDRRai~ItiNs~gteL~~~~R~kL 240 (350)
T KOG2957|consen 161 APYFEDCLSEEDLDEMNIEIIRNTLYKAYLEDFYNFCKKLGGATAEVMCEILAFEADRRAIIITINSFGTELSKEDRAKL 240 (350)
T ss_pred hHHHHhhcCHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccceeEEEehhhcccccChhHHHHh
Confidence 99999999877778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccChhhHHhcccCCCHHHHHHHhhcCcchhHhhhhhccCCcchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 018709 241 YSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRL 320 (351)
Q Consensus 241 l~~~g~l~~~~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~~~~~~~lE~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ 320 (351)
+|.+|++.|..+..|+.+++.+++..+++..+-|+.+++...++....+|+.+.+..++++..++..+|.+++++||+.+
T Consensus 241 ~P~~g~lyp~~~~~La~aed~e~vk~v~~~~~~Y~~~fd~~~~~g~ktLed~f~e~Ev~~~~~aF~qqfh~gvfyay~Kl 320 (350)
T KOG2957|consen 241 YPNCGKLYPRGLELLARAEDYEQVKNVLSTYYEYKALFDKDGGPGSKTLEDVFYEHEVKLNVLAFLQQFHFGVFYAYMKL 320 (350)
T ss_pred CCCcCccChhHHHHHHhhhhHHHHHHHHHhhhhhHhHhhcCCCCccccHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999988898999887544457899999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhchhhhhccccccc
Q 018709 321 REQEIRNLMWISECVAQNQKSRVHDSVVFI 350 (351)
Q Consensus 321 ke~Ei~nLr~I~eg~~~~~~~~i~~~~~~~ 350 (351)
||+||+||.||+||+.|+.+++|.+||||+
T Consensus 321 KEQEiRNI~WIAECIaQnqr~ri~~~ipi~ 350 (350)
T KOG2957|consen 321 KEQEIRNIVWIAECIAQNQRDRIDNYIPIM 350 (350)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccccCC
Confidence 999999999999999999999999999985
No 6
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=99.94 E-value=7.8e-26 Score=215.81 Aligned_cols=214 Identities=17% Similarity=0.205 Sum_probs=191.1
Q ss_pred cCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 018709 26 GLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNE----PSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYIT 101 (351)
Q Consensus 26 ~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~----~~~~~~~~lE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~ 101 (351)
+.++.+++.+|++++|++|+++.|++|+|++.+.+. ..+.++..+|.+|++.++..+..+.++.|.+.+.+.+++.
T Consensus 132 g~l~~~~l~~l~~~~~~~e~~~~L~~T~Y~~~l~~~~~~~~~~~~~~~~E~~Ld~~~~~~l~~~~~~~~~~~~~l~~~~~ 211 (352)
T PRK01198 132 GELDLEKLKELLEAKSVEEIVKILEGTEYYEVLEEALEDYEETGDLQPIENALDKYYYENLLEIASPKDIDEKLLLEYVR 211 (352)
T ss_pred CcCCHHHHHHHHhCCCHHHHHHHhcCCchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 447889999999999999999999999999998763 2345899999999999988888877766777789999999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcccccCCCCHH
Q 018709 102 YGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIE 179 (351)
Q Consensus 102 ~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~~~~~~~~~~ 179 (351)
.++|+.||++++|++..|.+++.+...++|.|.++ .+.+++ ++|++++++.| .+|+|++++.++.+.+. +++++.
T Consensus 212 ~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~~g~i~~~~l~~l~-~~~~~~~~~~L-~~t~y~~~l~~~~~~~~-~~~~~~ 288 (352)
T PRK01198 212 TEIDITNIKTLLRLKAQGLSADFIEKVLIPGGSLDEEKLKELL-AEDIEELVSAL-EGTKYGDVLSEALEEYE-ETGSLS 288 (352)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHccCCCCcCHHHHHHHh-cCCHHHHHHHH-hcCccHHHHHHHHHHHH-ccCCHH
Confidence 99999999999999999999999988899999877 799999 99999999999 99999999999887762 448999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhcccc
Q 018709 180 IMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYS 242 (351)
Q Consensus 180 ~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~ 242 (351)
.+|..+|+++++.+.+.++..+......+..++..++|+.||++|+|+|.+|+++|+|+..++
T Consensus 289 ~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl~~~e~Ei~NL~~I~~gk~~~~~~e~I~~~L~ 351 (352)
T PRK01198 289 VFEKALDNYLLEYMKKLSKRYPFSVEPILGYILAKEREVKNLRIIARGKENGLSPEEIRERLV 351 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 999999999999999887764444568899999999999999999999999999999987764
No 7
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=99.92 E-value=8e-24 Score=201.27 Aligned_cols=206 Identities=15% Similarity=0.185 Sum_probs=173.9
Q ss_pred chhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 018709 137 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA 216 (351)
Q Consensus 137 ~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~i 216 (351)
.+.+|++++|++|+++.| ++|+|++.+++... ...++..+|.+||+.++..+....+..++..++.+..++. ++
T Consensus 24 ~~~~L~~~~s~~e~~~~L-~~t~Y~~~l~~~~~----~~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~ 97 (343)
T TIGR02923 24 DFNELLEMRGTDEIVRFL-EETDYKKELDELGS----KSYGVDLIEHALDANLAKTYEKLFRISPGASRDLIRLYLK-KW 97 (343)
T ss_pred HHHHHHhCCCHHHHHHHh-cCCChHHHHHHhhh----ccCCHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-HH
Confidence 588999999999999999 99999999987642 2367888999999998888777666556655567766555 79
Q ss_pred HHHHHHHHHHhcCCCCCHHhhhccccCCcccChhhHHhcccCCCHHHHHHHhhcCcchhHhhhhh-ccCCcchHHHHHHH
Q 018709 217 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SYGESQMLDKAFYE 295 (351)
Q Consensus 217 D~~Ni~~i~R~k~~~~~~e~~~~~l~~~g~l~~~~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~-~~~~~~~lE~~~~~ 295 (351)
|+.||++++|++.+|.+++++..+++|+|.++.+.+.+|+++++++++.+.|.+|+|++.+.+.. +.++...+|..+|+
T Consensus 98 di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~~L~~t~y~~~l~~~~~~~~~l~~~E~~Ld~ 177 (343)
T TIGR02923 98 DVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEALEGTPYYGPLQEALAGNGDLSPIENELDR 177 (343)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHHHcCCCccHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887665543 23456789999999
Q ss_pred HHHHHHH-HHhhcCCchHHHHHHHHHHHHHHHhHHHHHHHHhhchh-hhhccccc
Q 018709 296 EEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQK-SRVHDSVV 348 (351)
Q Consensus 296 ~~~~~~~-~~~~~~~~~~~i~aYl~~ke~Ei~nLr~I~eg~~~~~~-~~i~~~~~ 348 (351)
+.+..+. .++..+.+..++++|++.+|.|+.||++|++|++++++ ++|.++++
T Consensus 178 ~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~li 232 (343)
T TIGR02923 178 MYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYTI 232 (343)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcc
Confidence 7776655 45444457789999999999999999999999999975 89988864
No 8
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=99.78 E-value=2.2e-17 Score=154.39 Aligned_cols=211 Identities=15% Similarity=0.170 Sum_probs=177.6
Q ss_pred HHhHHHHHcCCChHHHHHhcCCCCChhhhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 018709 30 AADYNNLCQCETLDDIKMHLSATEYGPYLQ----NEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHM 105 (351)
Q Consensus 30 ~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~----~~~~~~~~~~lE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d 105 (351)
.+.+..+..++|++|+...+..|.|-..+. +...+.+...+|..|.+.+++.+......-.++. .+..++....|
T Consensus 129 ~~~~~~l~~a~t~eev~~~~~~~~y~~~~~~~~~~y~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~~~-~~~~~~~~eID 207 (346)
T COG1527 129 FETLLTLAEAKTMEEVVETLEGTTYLAPLEEALRDYEDTGDIEPLENALDKAYYEDLLRSVNSEKGDE-LLREFLRLEID 207 (346)
T ss_pred HHHHHHHHhhcchHHHHHHHhcCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHH
Confidence 567888999999999999999988988775 2333458999999999999766665443333321 68889999999
Q ss_pred HHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcccccCCCCHHHHHH
Q 018709 106 IDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRN 183 (351)
Q Consensus 106 i~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~~~~~~~~~~~~E~ 183 (351)
+.||++++|++..+.+.+.....+.++|.++ .+..|..++|+.++++.| ++|+|++.+..+...++ +.+.+...|.
T Consensus 208 ~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~~~~l-~~t~yg~~l~~~~~~~~-~~~~~~~~e~ 285 (346)
T COG1527 208 RRNIKTALRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDVLEAL-EGTSYGDALSEYREEYE-EGGSIAVFEE 285 (346)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHHHHHc-ccCchHHHHHHHHHHhh-cCCchhHHHH
Confidence 9999999999998777777666667777777 799999999999999999 99999999999887762 3366777888
Q ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccC
Q 018709 184 TLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSN 243 (351)
Q Consensus 184 ~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~ 243 (351)
++++++...+...+...+-....++..+...++++.||+||++||.+|+++|.+++.+++
T Consensus 286 ~l~~~~~~~~~~~a~~~p~s~~~v~~yl~~KE~EV~NLr~Ia~~k~~~~~~e~i~~~~~~ 345 (346)
T COG1527 286 ALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEVKNLRWIAEGKANGLPREEIKELLVP 345 (346)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 899999999999998755444578999999999999999999999999999999887765
No 9
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=99.75 E-value=2.1e-18 Score=163.58 Aligned_cols=211 Identities=14% Similarity=0.178 Sum_probs=150.0
Q ss_pred CHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Q 018709 29 TAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPS---PLHTTTIVEKCTLKLVDEYKHMLCQAT-EPLSTFLEYITYGH 104 (351)
Q Consensus 29 ~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~---~~~~~~lE~~L~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~ 104 (351)
+...+.+|+.++|++|++..|+.|+|++.+..... ..+...++..+.+..+.+........+ .+.+.+-+++..+.
T Consensus 121 ~~~~l~~l~~~~~~~e~~~~L~~t~y~~~l~~~~~~~~~~~~~~~~~~l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~i 200 (337)
T PF01992_consen 121 SFEDLKELLSAKDVEELIEALKGTPYYEVLRQALEDYEQQDFFYIEEALDDRYYEDLLKAAKKLSGSEREILRELLGMEI 200 (337)
T ss_dssp HHHHHHHSSSHHHHHHHH-HTTT-THHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---TSS-HHHHHHHHHHH
T ss_pred ChhhHHHHhccCCHHHHHHHhcCcchHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 46789999999999999999999999999966421 124555666677777666555444333 44556668999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcccccCCCCHHHHH
Q 018709 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMR 182 (351)
Q Consensus 105 di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~~~~~~~~~~~~E 182 (351)
|+.||++++|++..|.+++++...+.+.|.++ .+..+++++|.+++++.| .+|+|++.+......+ ...++..+|
T Consensus 201 D~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l~~l~~~~~~~~~~~~l-~~t~y~~~~~~~~~~~--~~~~~~~~E 277 (337)
T PF01992_consen 201 DLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRLKALAEAEDVEEFLEAL-SGTPYGKLLSDAEEEY--EETSLSELE 277 (337)
T ss_dssp HHHHHHHHHHTTTS---GGGT-----SS-SS--H-HHHHHHHTT-GGGGGS--TTSTTGGGTT--S---------HHHHH
T ss_pred HHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHHHHHHHCCCHHHHHHHH-hcCchHHHHHHhhhhh--hhhhHHHHH
Confidence 99999999999999999999987778888877 599999999999999999 9999999998765443 212689999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhcccc
Q 018709 183 NTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYS 242 (351)
Q Consensus 183 ~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~ 242 (351)
..++++.+....+.+...+-....++..+...++++.||++|+.|+.+|+|+++++..++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL~~I~~g~~~gl~~e~I~~~lv 337 (337)
T PF01992_consen 278 RALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRNLRTIIEGKRYGLSPEEIRERLV 337 (337)
T ss_dssp HHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 999999999888877764444568999999999999999999999999999999987764
No 10
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=98.65 E-value=8.7e-07 Score=80.27 Aligned_cols=204 Identities=11% Similarity=0.135 Sum_probs=130.0
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCcchhHHHhcCCHHHHHHHhhhCC----CChh
Q 018709 87 CQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDT----PLAP 162 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~~l~~L~~~~~~~el~~~l~~~t----~y~~ 162 (351)
...+.....+++.+..+||..|+...++. |.+. ..|.|.++ .+..++.+..+..++ .+..
T Consensus 34 ~~lS~~D~~~~~ll~~~~D~~n~l~~l~~---~~~~------~~~~g~~~-------~~el~~~~~~~~~~~~~~~~lP~ 97 (271)
T PF10962_consen 34 PNLSAKDAKLIDLLYLYFDNENLLRLLWK---GEPA------PDPRGNYS-------EEELEELIKAQKEGDEPDKGLPS 97 (271)
T ss_pred HhcCHHHHHHHHHHHHhccHHHHHHHHHc---CCCC------cCcccCcC-------HHHHHHHHHHHHhcccccccccH
Confidence 33444557899999999999995544433 2221 24667776 112333344431222 4555
Q ss_pred hhhhhhcccc-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccc
Q 018709 163 YFSECITSED-LDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLY 241 (351)
Q Consensus 163 ~l~~~~~~~~-~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l 241 (351)
++.+++..|- .+..+....|..|-..||+.+.+ .++ +.+++++...-|+.||.+.+|+++.|+++.. .+
T Consensus 98 y~~~Fl~~y~~~~~e~~~~~e~~L~~~yy~~~~~----~~n---~Fl~~~~~F~~~lRnilaAlr~R~~g~d~~~---~l 167 (271)
T PF10962_consen 98 YLKDFLEDYLNEEAEERIRHEDRLVAAYYAYAMK----SSN---PFLREWFEFNLELRNILAALRARKLGFDVSK---EL 167 (271)
T ss_pred HHHHHHHHHcccchhhccchHHHHHHHHHHHHHH----ccC---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---cc
Confidence 5555555541 12255577889999999998765 222 6999999999999999999999999987654 23
Q ss_pred cCCcccChhhHHhcccCCCHHHHHHHhh-cCcchhHhhhhhccCCcchHHHHHHHHHHHHHH-HHhhcCCchHHHHHHHH
Q 018709 242 SNFGLLYPYGHEELAVCEDIDQVRGVME-KYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMR 319 (351)
Q Consensus 242 ~~~g~l~~~~l~~l~~~~~~~~~~~~l~-~t~~~~~l~~~~~~~~~~~lE~~~~~~~~~~~~-~~~~~~~~~~~i~aYl~ 319 (351)
+.+|.+ .+.+.+- .+++.+ |. ..+|...+.......+....|+.++.+..+.+. ....++|++..+++|+.
T Consensus 168 ~g~~~v-~~~Lr~s-~a~dFg-----L~~~~p~l~~~~~~~~~~~l~~~E~~Ld~~rW~~Le~~~~~~~Fd~e~V~aY~l 240 (271)
T PF10962_consen 168 VGDGEV-AEALRQS-NAPDFG-----LPEEFPYLPELIRIYEEEPLVERERLLDLLRWNWLEELSFGHYFDFEAVFAYLL 240 (271)
T ss_pred cCcHHH-HHHHHhc-CCCCCC-----CCccchhHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 333333 2333322 344442 11 123444444333333455679999999999887 67789999999999987
Q ss_pred HHHH
Q 018709 320 LREQ 323 (351)
Q Consensus 320 ~ke~ 323 (351)
.-..
T Consensus 241 kl~l 244 (271)
T PF10962_consen 241 KLML 244 (271)
T ss_pred HHHH
Confidence 6544
No 11
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=92.16 E-value=6.3 Score=36.35 Aligned_cols=136 Identities=11% Similarity=0.152 Sum_probs=89.7
Q ss_pred chhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 018709 137 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA 216 (351)
Q Consensus 137 ~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~i 216 (351)
+...|.+|+|.+|+-=.| .+|.|+.++...- .......|+..+-.....+..-.-..-..+.+. +-+++.---
T Consensus 32 dY~nL~QCE~LEDlki~L-s~Tdyg~fl~n~~-----s~lt~s~I~~~l~ekL~~ef~h~R~~a~epl~t-fldyity~y 104 (350)
T KOG2957|consen 32 DYNNLVQCENLEDLKIHL-SSTDYGNFLANEP-----SPLTVSVIDEKLREKLVDEFDHIRDQADEPLST-FLDYITYGY 104 (350)
T ss_pred HHHHHHhhccHHHHHHhh-cccccccccccCC-----CCCcHHHHHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHH
Confidence 578899999999999999 9999999987542 223555566555555544443333333323333 346665555
Q ss_pred HHHHHHHHHHhcCCCCCHHhhhccccCCcccChhhHHhcccCCCH-HHHHHHhhcCcchhHhhhhh
Q 018709 217 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDI-DQVRGVMEKYPPYQSIFSKL 281 (351)
Q Consensus 217 D~~Ni~~i~R~k~~~~~~e~~~~~l~~~g~l~~~~l~~l~~~~~~-~~~~~~l~~t~~~~~l~~~~ 281 (351)
=+.|+.-++-+.-.+.+-.++..-..|-|++ +.+..+.-+.+. +-+..+|=.||..+.+.+..
T Consensus 105 mIdNv~lLitgtl~~r~~~ell~kChpLG~F--~~l~ai~vA~n~~ely~~vlvdTpla~~F~dc~ 168 (350)
T KOG2957|consen 105 MIDNVILLITGTLHDRDVGELLEKCHPLGSF--DQLEAIKVASNPAELYNAVLVDTPLAPYFEDCL 168 (350)
T ss_pred HHhHHHHHHhccccCCCHHHHHHhcCCcCch--hhhhhhhhcCCHHHHHHHHHhcCcchHHHHhhc
Confidence 5669999999988888877776666777865 456666656674 44555677788765554443
No 12
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=61.21 E-value=1.4e+02 Score=27.54 Aligned_cols=122 Identities=14% Similarity=0.016 Sum_probs=67.6
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccCCcccChhhHHhcccCCC-HHHHHHHhhcCcchhHhh
Q 018709 200 LGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCED-IDQVRGVMEKYPPYQSIF 278 (351)
Q Consensus 200 ~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~~g~l~~~~l~~l~~~~~-~~~~~~~l~~t~~~~~l~ 278 (351)
++..|.+.+ +++....|..|+...++.+.- ..-+.|.++.+.+.++..+.- .+.....++. |...+.
T Consensus 36 lS~~D~~~~-~ll~~~~D~~n~l~~l~~~~~---------~~~~~g~~~~~el~~~~~~~~~~~~~~~~lP~--y~~~Fl 103 (271)
T PF10962_consen 36 LSAKDAKLI-DLLYLYFDNENLLRLLWKGEP---------APDPRGNYSEEELEELIKAQKEGDEPDKGLPS--YLKDFL 103 (271)
T ss_pred cCHHHHHHH-HHHHHhccHHHHHHHHHcCCC---------CcCcccCcCHHHHHHHHHHHHhcccccccccH--HHHHHH
Confidence 455565544 899999999996666664431 123557788777766553300 0100111111 111111
Q ss_pred -hhh--ccCCcchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhHHHHHHHHhhch
Q 018709 279 -SKL--SYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ 339 (351)
Q Consensus 279 -~~~--~~~~~~~lE~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nLr~I~eg~~~~~ 339 (351)
+.. ..++....|..+-..-++.+.. ..-+++.=.+.-+.|++||-+.+.+...|.
T Consensus 104 ~~y~~~~~e~~~~~e~~L~~~yy~~~~~------~~n~Fl~~~~~F~~~lRnilaAlr~R~~g~ 161 (271)
T PF10962_consen 104 EDYLNEEAEERIRHEDRLVAAYYAYAMK------SSNPFLREWFEFNLELRNILAALRARKLGF 161 (271)
T ss_pred HHHcccchhhccchHHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 110 1122344555555444444332 334567777888999999999999999885
No 13
>PRK14082 hypothetical protein; Provisional
Probab=47.44 E-value=63 Score=22.61 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=35.0
Q ss_pred HhHHHHHcCCChHHHHHhcCCCCChhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 018709 31 ADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYI 100 (351)
Q Consensus 31 ~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~~~~~~~lE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~ 100 (351)
++++.++++=+ +-+.+-|.+|.|. .|.++|+-|.-..++-... +.-.+...|.+++
T Consensus 9 ~e~e~ii~~Fe-pkIkKsL~~T~yq----------eREDLeQElk~Ki~eK~~~---~~~~e~PGF~efi 64 (65)
T PRK14082 9 EEIEHLIENFS-PMIKKKLSNTSYQ----------EREDLEQELKIKIIEKADM---LLCQEVPGFWEFI 64 (65)
T ss_pred HHHHHHHHHcc-HHHHHHHhcCChh----------hHHHHHHHHHHHHHHHHHH---hhcccCCcHHHhh
Confidence 44555665543 4577788888887 4889999998887655333 2222223477664
No 14
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=23.87 E-value=88 Score=20.37 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=27.9
Q ss_pred CCCHHhHHHHHcCCChHHHHHhcCCCCChhhh
Q 018709 27 LLTAADYNNLCQCETLDDIKMHLSATEYGPYL 58 (351)
Q Consensus 27 lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l 58 (351)
+||++++.+|...+...--++.|+..++.-..
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCCeeEE
Confidence 79999999999999999999999987775444
No 15
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=21.98 E-value=55 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHhhchh-hhhcccc
Q 018709 325 IRNLMWISECVAQNQK-SRVHDSV 347 (351)
Q Consensus 325 i~nLr~I~eg~~~~~~-~~i~~~~ 347 (351)
+..|..|..++..|++ ++|+.++
T Consensus 1 v~rL~~I~~~r~lGfsL~eI~~~l 24 (65)
T PF09278_consen 1 VERLQFIRRLRELGFSLEEIRELL 24 (65)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568889999999998 9998876
Done!