Query 018711
Match_columns 351
No_of_seqs 153 out of 2012
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.5E-60 3.2E-65 445.1 29.8 293 3-336 12-312 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.8E-60 1.3E-64 432.9 28.2 303 3-339 23-331 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 3.2E-56 7E-61 401.1 23.8 252 3-336 13-267 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 4.2E-55 9E-60 411.0 27.9 294 3-331 10-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 2E-54 4.2E-59 410.7 28.8 297 3-336 24-336 (346)
6 PRK10625 tas putative aldo-ket 100.0 1.8E-53 3.8E-58 404.6 29.9 292 3-334 12-340 (346)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.4E-53 3.1E-58 394.8 25.5 279 6-332 1-282 (283)
8 PLN02587 L-galactose dehydroge 100.0 5E-53 1.1E-57 396.6 29.2 278 3-335 10-302 (314)
9 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.6E-53 7.9E-58 388.5 26.3 251 3-336 2-255 (267)
10 PRK14863 bifunctional regulato 100.0 8E-53 1.7E-57 390.2 23.7 268 2-331 3-280 (292)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 9.4E-51 2E-55 376.3 27.7 273 2-330 9-284 (285)
12 PRK10376 putative oxidoreducta 100.0 2.7E-50 6E-55 373.7 27.3 260 3-333 16-288 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 5.6E-50 1.2E-54 368.6 24.3 251 3-336 14-265 (275)
14 KOG1577 Aldo/keto reductase fa 100.0 9.4E-50 2E-54 359.2 21.2 259 3-336 14-288 (300)
15 COG4989 Predicted oxidoreducta 100.0 9.8E-49 2.1E-53 338.1 19.1 266 3-333 12-293 (298)
16 COG1453 Predicted oxidoreducta 100.0 1.6E-43 3.4E-48 322.0 20.6 264 3-338 12-290 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4E-41 8.6E-46 293.0 23.9 264 2-322 32-310 (342)
18 KOG3023 Glutamate-cysteine lig 97.8 5.2E-05 1.1E-09 66.4 6.8 72 144-216 155-227 (285)
19 PRK00208 thiG thiazole synthas 87.8 17 0.00038 32.7 12.8 112 102-216 67-182 (250)
20 cd04728 ThiG Thiazole synthase 87.7 18 0.00038 32.6 12.8 111 102-215 67-181 (248)
21 PRK07945 hypothetical protein; 87.3 9.3 0.0002 36.3 11.6 154 45-213 109-288 (335)
22 PRK08392 hypothetical protein; 85.6 25 0.00053 30.9 12.8 146 48-213 15-178 (215)
23 cd03174 DRE_TIM_metallolyase D 85.5 4.9 0.00011 36.3 8.5 106 107-216 15-135 (265)
24 PRK08609 hypothetical protein; 84.0 14 0.00031 37.7 11.9 151 47-213 349-522 (570)
25 PRK10558 alpha-dehydro-beta-de 83.9 11 0.00025 34.2 10.0 68 150-218 9-78 (256)
26 PF07021 MetW: Methionine bios 83.3 30 0.00064 30.0 12.1 149 52-222 6-172 (193)
27 PRK06740 histidinol-phosphatas 82.8 35 0.00076 32.3 13.3 99 115-214 156-289 (331)
28 TIGR03239 GarL 2-dehydro-3-deo 79.3 20 0.00044 32.4 9.9 66 152-218 4-71 (249)
29 PRK05692 hydroxymethylglutaryl 78.6 56 0.0012 30.2 17.4 108 107-217 22-141 (287)
30 PRK10128 2-keto-3-deoxy-L-rham 77.6 28 0.0006 31.9 10.3 67 151-218 9-77 (267)
31 TIGR01228 hutU urocanate hydra 75.7 7.5 0.00016 38.3 6.2 63 120-190 194-258 (545)
32 cd07939 DRE_TIM_NifV Streptomy 75.4 63 0.0014 29.2 12.3 99 107-213 16-127 (259)
33 PRK05414 urocanate hydratase; 75.3 8 0.00017 38.3 6.3 64 119-190 202-267 (556)
34 cd03319 L-Ala-DL-Glu_epimerase 75.1 54 0.0012 30.5 12.0 73 148-221 217-291 (316)
35 PRK05588 histidinol-phosphatas 74.9 64 0.0014 29.0 14.5 153 47-215 16-215 (255)
36 PLN02746 hydroxymethylglutaryl 74.8 41 0.0009 32.1 11.0 104 107-215 64-181 (347)
37 PRK07328 histidinol-phosphatas 74.6 68 0.0015 29.2 16.0 99 114-213 94-225 (269)
38 COG1140 NarY Nitrate reductase 74.1 2 4.3E-05 40.7 1.9 56 157-212 263-318 (513)
39 cd00423 Pterin_binding Pterin 73.6 54 0.0012 29.7 11.2 103 108-217 21-128 (258)
40 TIGR01290 nifB nitrogenase cof 72.9 90 0.002 30.8 13.3 111 107-221 59-199 (442)
41 PRK13352 thiamine biosynthesis 72.5 99 0.0021 30.1 16.7 92 107-225 139-231 (431)
42 PF07994 NAD_binding_5: Myo-in 71.2 15 0.00032 34.2 6.9 141 110-303 131-279 (295)
43 COG2987 HutU Urocanate hydrata 71.1 10 0.00022 37.0 5.8 58 121-186 204-261 (561)
44 TIGR00190 thiC thiamine biosyn 70.3 1.1E+02 0.0024 29.7 15.7 93 106-225 135-228 (423)
45 cd00739 DHPS DHPS subgroup of 70.1 86 0.0019 28.5 11.9 102 108-216 21-127 (257)
46 PRK07535 methyltetrahydrofolat 70.1 82 0.0018 28.7 11.5 100 109-217 23-124 (261)
47 PRK06015 keto-hydroxyglutarate 70.1 15 0.00032 32.1 6.3 88 109-214 14-102 (201)
48 cd06543 GH18_PF-ChiA-like PF-C 69.6 48 0.001 30.8 10.0 51 107-157 86-136 (294)
49 PRK06361 hypothetical protein; 69.1 77 0.0017 27.5 15.0 184 48-288 11-201 (212)
50 TIGR02311 HpaI 2,4-dihydroxyhe 68.4 62 0.0014 29.2 10.3 66 151-217 3-70 (249)
51 TIGR01182 eda Entner-Doudoroff 68.1 19 0.00042 31.5 6.6 88 109-214 18-106 (204)
52 TIGR01496 DHPS dihydropteroate 67.5 76 0.0016 28.8 10.7 100 108-216 20-125 (257)
53 PRK14461 ribosomal RNA large s 67.3 35 0.00077 32.8 8.7 90 131-221 231-353 (371)
54 PRK13753 dihydropteroate synth 67.0 68 0.0015 29.6 10.2 102 108-218 22-128 (279)
55 COG2022 ThiG Uncharacterized e 66.3 25 0.00055 31.3 6.8 87 104-193 76-162 (262)
56 PRK09248 putative hydrolase; V 64.1 1.1E+02 0.0023 27.4 13.1 85 126-214 94-190 (246)
57 PF00809 Pterin_bind: Pterin b 63.8 13 0.00029 32.6 4.9 91 121-218 28-125 (210)
58 PF01081 Aldolase: KDPG and KH 62.7 18 0.00039 31.5 5.3 46 161-214 60-106 (196)
59 PF01175 Urocanase: Urocanase; 62.5 16 0.00035 36.3 5.5 62 121-190 194-257 (546)
60 TIGR02660 nifV_homocitr homoci 61.8 1.5E+02 0.0033 28.3 15.2 99 107-213 19-130 (365)
61 TIGR00221 nagA N-acetylglucosa 61.4 94 0.002 30.0 10.6 131 47-182 77-214 (380)
62 cd07948 DRE_TIM_HCS Saccharomy 60.8 76 0.0016 28.9 9.4 102 107-216 18-132 (262)
63 cd00308 enolase_like Enolase-s 60.6 1E+02 0.0022 27.2 10.0 87 129-221 120-208 (229)
64 COG2102 Predicted ATPases of P 60.2 44 0.00096 29.6 7.3 102 144-281 75-177 (223)
65 PRK06552 keto-hydroxyglutarate 59.1 32 0.00068 30.4 6.4 88 109-214 23-114 (213)
66 PF05690 ThiG: Thiazole biosyn 59.1 1.4E+02 0.003 26.9 10.2 112 105-219 70-185 (247)
67 TIGR03822 AblA_like_2 lysine-2 58.3 1.6E+02 0.0035 27.6 12.7 93 129-222 137-240 (321)
68 PRK08195 4-hyroxy-2-oxovalerat 57.4 1E+02 0.0023 29.2 10.0 103 106-215 20-134 (337)
69 PRK04452 acetyl-CoA decarbonyl 57.1 1E+02 0.0022 29.1 9.6 92 122-218 86-184 (319)
70 PRK13958 N-(5'-phosphoribosyl) 57.0 31 0.00067 30.2 6.0 67 121-191 17-84 (207)
71 PRK06424 transcription factor; 56.6 25 0.00054 29.0 4.9 59 263-321 83-141 (144)
72 PRK11840 bifunctional sulfur c 55.7 1.3E+02 0.0029 28.3 10.1 76 104-180 143-218 (326)
73 PLN03228 methylthioalkylmalate 54.4 1.8E+02 0.004 29.3 11.5 103 107-217 102-230 (503)
74 TIGR03217 4OH_2_O_val_ald 4-hy 54.1 1.5E+02 0.0034 28.0 10.6 106 106-215 19-133 (333)
75 PRK11858 aksA trans-homoaconit 54.1 2.1E+02 0.0046 27.6 12.1 100 107-214 22-134 (378)
76 cd07943 DRE_TIM_HOA 4-hydroxy- 54.0 1.1E+02 0.0025 27.6 9.4 103 107-215 18-131 (263)
77 PRK02399 hypothetical protein; 53.5 31 0.00067 33.5 5.7 61 115-182 199-273 (406)
78 COG0135 TrpF Phosphoribosylant 52.0 90 0.0019 27.5 7.9 84 122-215 19-104 (208)
79 TIGR02764 spore_ybaN_pdaB poly 51.7 1.5E+02 0.0032 25.1 9.9 46 109-159 137-182 (191)
80 TIGR03849 arch_ComA phosphosul 50.4 1.2E+02 0.0027 27.2 8.7 110 5-122 28-145 (237)
81 COG1151 6Fe-6S prismane cluste 50.3 1.3E+02 0.0028 30.5 9.5 95 111-214 360-465 (576)
82 COG4130 Predicted sugar epimer 49.7 1.4E+02 0.0029 26.6 8.4 54 168-221 49-108 (272)
83 PRK11170 nagA N-acetylglucosam 49.0 1.6E+02 0.0035 28.4 10.0 35 149-183 179-213 (382)
84 COG2355 Zn-dependent dipeptida 48.8 1.3E+02 0.0029 28.1 9.0 29 299-329 270-299 (313)
85 cd07944 DRE_TIM_HOA_like 4-hyd 48.1 1.5E+02 0.0032 27.1 9.1 104 107-215 16-128 (266)
86 PLN02363 phosphoribosylanthran 48.0 51 0.0011 30.0 6.0 75 109-191 56-131 (256)
87 cd06543 GH18_PF-ChiA-like PF-C 46.4 2.5E+02 0.0053 26.1 11.4 149 61-221 106-265 (294)
88 COG0820 Predicted Fe-S-cluster 46.2 1.9E+02 0.004 27.7 9.5 89 132-221 216-331 (349)
89 PRK07114 keto-hydroxyglutarate 46.1 1.1E+02 0.0023 27.3 7.6 91 109-214 25-117 (222)
90 cd01948 EAL EAL domain. This d 45.4 1.3E+02 0.0028 26.0 8.3 102 111-216 98-209 (240)
91 PF06792 UPF0261: Uncharacteri 44.7 50 0.0011 32.1 5.6 63 116-185 199-275 (403)
92 cd00740 MeTr MeTr subgroup of 44.5 2.4E+02 0.0053 25.5 10.9 106 108-221 23-131 (252)
93 PRK11613 folP dihydropteroate 44.4 2.1E+02 0.0045 26.5 9.4 101 108-216 35-140 (282)
94 PRK01222 N-(5'-phosphoribosyl) 43.3 59 0.0013 28.5 5.5 74 109-191 12-86 (210)
95 CHL00162 thiG thiamin biosynth 42.3 2.7E+02 0.0058 25.4 9.9 58 103-160 76-139 (267)
96 TIGR01928 menC_lowGC/arch o-su 42.1 1.2E+02 0.0027 28.4 7.9 88 129-222 198-287 (324)
97 COG2040 MHT1 Homocysteine/sele 40.8 1.7E+02 0.0036 27.1 8.0 106 107-217 126-241 (300)
98 TIGR01502 B_methylAsp_ase meth 40.7 1.6E+02 0.0035 28.8 8.5 84 133-218 267-357 (408)
99 TIGR02090 LEU1_arch isopropylm 40.6 2.3E+02 0.005 27.1 9.6 99 107-213 18-129 (363)
100 PF02679 ComA: (2R)-phospho-3- 40.4 61 0.0013 29.3 5.2 110 5-127 41-162 (244)
101 TIGR01856 hisJ_fam histidinol 39.9 2.8E+02 0.006 24.9 11.4 25 113-138 90-114 (253)
102 cd03318 MLE Muconate Lactonizi 39.8 1.4E+02 0.003 28.5 8.0 73 147-220 227-301 (365)
103 TIGR00048 radical SAM enzyme, 39.5 2.6E+02 0.0056 26.7 9.7 91 131-221 218-334 (355)
104 cd01321 ADGF Adenosine deamina 39.3 3.4E+02 0.0075 25.7 12.1 108 106-214 102-251 (345)
105 cd03316 MR_like Mandelate race 38.8 3.4E+02 0.0074 25.6 13.8 98 107-216 199-298 (357)
106 TIGR01378 thi_PPkinase thiamin 38.6 2.6E+02 0.0056 24.3 8.8 39 278-316 72-110 (203)
107 COG1748 LYS9 Saccharopine dehy 38.5 1.2E+02 0.0025 29.6 7.1 76 51-140 83-159 (389)
108 PRK13352 thiamine biosynthesis 38.2 95 0.0021 30.2 6.3 130 146-315 122-281 (431)
109 PRK05718 keto-hydroxyglutarate 38.0 1.1E+02 0.0024 26.9 6.4 87 109-213 25-112 (212)
110 TIGR00284 dihydropteroate synt 37.8 2.3E+02 0.005 28.5 9.3 94 111-216 165-258 (499)
111 PRK14457 ribosomal RNA large s 37.7 3.7E+02 0.008 25.6 10.6 95 127-221 211-331 (345)
112 PRK10128 2-keto-3-deoxy-L-rham 37.7 1.1E+02 0.0024 27.9 6.6 76 117-194 158-244 (267)
113 PRK14466 ribosomal RNA large s 37.7 3.5E+02 0.0076 25.8 10.1 91 131-221 210-326 (345)
114 PF05368 NmrA: NmrA-like famil 37.2 1.2E+02 0.0027 26.4 6.8 85 127-221 21-106 (233)
115 PRK14464 ribosomal RNA large s 37.1 2.3E+02 0.005 27.0 8.8 78 144-221 225-318 (344)
116 cd03770 SR_TndX_transposase Se 36.8 61 0.0013 26.2 4.3 44 114-157 54-97 (140)
117 PRK09613 thiH thiamine biosynt 36.7 4.5E+02 0.0096 26.3 12.2 109 107-218 114-241 (469)
118 PF00356 LacI: Bacterial regul 36.2 58 0.0013 21.1 3.3 42 269-318 2-43 (46)
119 TIGR02026 BchE magnesium-proto 36.0 4.6E+02 0.0099 26.2 12.3 104 108-217 222-344 (497)
120 PF13378 MR_MLE_C: Enolase C-t 35.8 51 0.0011 25.3 3.6 54 166-221 3-57 (111)
121 cd03314 MAL Methylaspartate am 35.6 3.4E+02 0.0073 26.2 9.8 85 131-217 229-320 (369)
122 COG0626 MetC Cystathionine bet 35.2 3.2E+02 0.007 26.6 9.6 124 36-183 77-203 (396)
123 cd03322 rpsA The starvation se 33.5 1.5E+02 0.0034 28.2 7.2 83 129-217 189-273 (361)
124 PF11242 DUF2774: Protein of u 33.4 59 0.0013 22.5 3.0 22 268-289 15-36 (63)
125 cd03315 MLE_like Muconate lact 33.3 3.6E+02 0.0078 24.2 14.7 102 108-221 140-243 (265)
126 cd03323 D-glucarate_dehydratas 33.1 2.4E+02 0.0051 27.4 8.4 70 148-218 250-321 (395)
127 TIGR03821 AblA_like_1 lysine-2 33.1 4.2E+02 0.009 24.9 12.0 93 129-222 143-246 (321)
128 cd04742 NPD_FabD 2-Nitropropan 32.6 2E+02 0.0044 28.2 7.7 65 152-217 32-103 (418)
129 TIGR03070 couple_hipB transcri 32.5 38 0.00083 22.1 2.1 21 267-287 5-25 (58)
130 PRK14456 ribosomal RNA large s 32.4 2.9E+02 0.0063 26.6 8.8 91 131-221 237-354 (368)
131 cd07937 DRE_TIM_PC_TC_5S Pyruv 32.3 1.7E+02 0.0037 26.7 7.0 101 108-214 18-136 (275)
132 PRK08776 cystathionine gamma-s 32.2 4.6E+02 0.01 25.4 10.4 87 130-221 100-187 (405)
133 PRK15072 bifunctional D-altron 31.8 3.7E+02 0.008 26.1 9.6 70 147-217 245-316 (404)
134 TIGR02534 mucon_cyclo muconate 31.7 2E+02 0.0043 27.5 7.6 74 147-221 226-301 (368)
135 cd03327 MR_like_2 Mandelate ra 31.4 2.5E+02 0.0053 26.5 8.1 69 147-216 210-280 (341)
136 COG0159 TrpA Tryptophan syntha 31.1 3.8E+02 0.0083 24.5 8.8 17 200-216 138-154 (265)
137 PF02581 TMP-TENI: Thiamine mo 30.9 3.2E+02 0.007 22.9 10.9 53 160-216 95-156 (180)
138 PRK00077 eno enolase; Provisio 30.8 5.2E+02 0.011 25.3 10.6 96 108-214 261-361 (425)
139 cd07942 DRE_TIM_LeuA Mycobacte 30.8 3E+02 0.0066 25.4 8.3 96 108-211 20-135 (284)
140 COG1358 RPL8A Ribosomal protei 30.6 2.2E+02 0.0047 22.6 6.3 64 144-215 12-76 (116)
141 TIGR01428 HAD_type_II 2-haloal 30.6 1.1E+02 0.0025 25.8 5.3 35 144-179 94-128 (198)
142 TIGR00035 asp_race aspartate r 30.6 3.2E+02 0.0069 24.1 8.3 70 108-178 14-95 (229)
143 PRK14017 galactonate dehydrata 30.3 3.6E+02 0.0078 25.9 9.2 69 148-217 217-287 (382)
144 PRK14459 ribosomal RNA large s 29.9 3.5E+02 0.0075 26.2 8.8 91 131-221 241-360 (373)
145 cd03325 D-galactonate_dehydrat 29.8 3.9E+02 0.0085 25.3 9.3 95 114-216 189-285 (352)
146 COG2185 Sbm Methylmalonyl-CoA 29.8 3E+02 0.0064 22.7 7.1 56 163-223 20-77 (143)
147 COG0119 LeuA Isopropylmalate/h 29.7 1.1E+02 0.0025 29.8 5.6 101 107-214 20-135 (409)
148 PRK15108 biotin synthase; Prov 29.7 4.9E+02 0.011 24.7 13.5 109 108-220 76-195 (345)
149 PRK00730 rnpA ribonuclease P; 29.6 2.9E+02 0.0063 22.6 7.0 49 108-157 60-110 (138)
150 PRK13796 GTPase YqeH; Provisio 29.5 5.1E+02 0.011 24.8 11.1 119 48-177 58-180 (365)
151 KOG0437 Leucyl-tRNA synthetase 29.5 91 0.002 32.8 4.9 53 107-171 530-582 (1080)
152 TIGR03822 AblA_like_2 lysine-2 29.4 2.9E+02 0.0064 25.9 8.2 102 109-214 151-263 (321)
153 KOG0730 AAA+-type ATPase [Post 29.2 5.4E+02 0.012 26.9 10.2 133 146-332 557-690 (693)
154 cd00338 Ser_Recombinase Serine 28.7 1E+02 0.0023 24.2 4.5 52 114-166 51-102 (137)
155 cd01573 modD_like ModD; Quinol 28.1 2E+02 0.0044 26.3 6.7 63 148-214 171-235 (272)
156 PRK14465 ribosomal RNA large s 28.1 3.9E+02 0.0084 25.5 8.7 91 131-221 215-330 (342)
157 cd00405 PRAI Phosphoribosylant 28.0 1.3E+02 0.0028 26.0 5.2 41 128-173 73-113 (203)
158 PRK13803 bifunctional phosphor 27.9 3E+02 0.0064 28.5 8.5 96 109-213 12-108 (610)
159 PRK01018 50S ribosomal protein 27.9 2.6E+02 0.0057 21.2 6.3 61 147-216 4-65 (99)
160 PF00682 HMGL-like: HMGL-like 27.9 4.2E+02 0.009 23.2 11.1 98 108-212 11-124 (237)
161 PRK13602 putative ribosomal pr 27.4 2.3E+02 0.0049 20.7 5.6 57 151-216 3-60 (82)
162 PLN02444 HMP-P synthase 27.2 7E+02 0.015 25.6 14.8 93 106-227 295-388 (642)
163 TIGR00381 cdhD CO dehydrogenas 27.0 5.9E+02 0.013 24.7 11.6 108 111-222 128-253 (389)
164 TIGR00677 fadh2_euk methylenet 26.9 3.3E+02 0.0072 25.0 7.9 100 107-212 70-190 (281)
165 COG1149 MinD superfamily P-loo 26.9 1.3E+02 0.0029 27.6 5.0 87 123-221 158-251 (284)
166 PRK02866 cyanate hydratase; Va 26.7 82 0.0018 26.0 3.4 62 267-330 8-69 (147)
167 smart00052 EAL Putative diguan 26.5 3.8E+02 0.0081 23.1 8.1 102 111-216 99-210 (241)
168 PRK10200 putative racemase; Pr 26.4 4.5E+02 0.0099 23.2 8.5 65 108-173 14-89 (230)
169 PRK12613 galactose-6-phosphate 26.4 2.8E+02 0.006 22.8 6.4 94 107-216 8-104 (141)
170 PRK14847 hypothetical protein; 25.9 4.1E+02 0.0089 25.2 8.4 105 107-219 50-180 (333)
171 TIGR01212 radical SAM protein, 25.8 5.4E+02 0.012 23.8 11.2 65 107-176 90-156 (302)
172 PRK03459 rnpA ribonuclease P; 25.7 2.7E+02 0.0059 22.1 6.2 50 108-157 62-114 (122)
173 cd03317 NAAAR N-acylamino acid 25.6 3.3E+02 0.0071 25.7 7.9 87 129-221 203-291 (354)
174 PTZ00081 enolase; Provisional 25.6 5.9E+02 0.013 25.2 9.7 97 108-215 281-382 (439)
175 PRK14462 ribosomal RNA large s 25.6 6E+02 0.013 24.3 10.3 89 133-221 225-339 (356)
176 PRK07329 hypothetical protein; 25.4 4.9E+02 0.011 23.2 14.3 102 114-216 82-215 (246)
177 smart00857 Resolvase Resolvase 25.2 1.8E+02 0.0039 23.2 5.3 51 114-165 51-101 (148)
178 TIGR00542 hxl6Piso_put hexulos 25.1 5.1E+02 0.011 23.3 8.9 17 199-215 97-113 (279)
179 PRK02901 O-succinylbenzoate sy 24.7 6E+02 0.013 24.0 9.5 82 130-221 162-244 (327)
180 PF00578 AhpC-TSA: AhpC/TSA fa 24.6 1.4E+02 0.0031 22.7 4.5 34 146-179 43-79 (124)
181 PF14871 GHL6: Hypothetical gl 24.6 75 0.0016 25.7 2.8 25 195-219 43-67 (132)
182 cd07938 DRE_TIM_HMGL 3-hydroxy 24.4 2.4E+02 0.0052 25.8 6.5 103 108-215 17-133 (274)
183 PRK04820 rnpA ribonuclease P; 24.2 3.2E+02 0.0069 22.5 6.5 50 108-157 63-114 (145)
184 PF11020 DUF2610: Domain of un 24.0 3E+02 0.0064 20.2 6.3 29 259-287 47-75 (82)
185 PRK14455 ribosomal RNA large s 24.0 4.1E+02 0.0089 25.4 8.2 90 132-221 223-338 (356)
186 PF01890 CbiG_C: Cobalamin syn 24.0 2.3E+02 0.0051 22.3 5.5 50 168-217 12-66 (121)
187 COG3653 N-acyl-D-aspartate/D-g 23.9 7.3E+02 0.016 24.7 14.5 46 267-315 385-434 (579)
188 PRK00912 ribonuclease P protei 23.8 5.1E+02 0.011 22.9 12.0 141 47-216 16-174 (237)
189 PF01053 Cys_Met_Meta_PP: Cys/ 23.7 5.9E+02 0.013 24.6 9.3 93 43-158 76-170 (386)
190 cd07940 DRE_TIM_IPMS 2-isoprop 23.7 5.5E+02 0.012 23.2 12.6 98 107-213 16-131 (268)
191 PRK02910 light-independent pro 23.4 7.8E+02 0.017 24.8 13.5 71 113-184 100-192 (519)
192 PRK08227 autoinducer 2 aldolas 23.3 5.8E+02 0.013 23.3 10.2 67 200-303 131-202 (264)
193 PRK09726 antitoxin HipB; Provi 23.3 78 0.0017 23.3 2.5 54 267-320 15-68 (88)
194 TIGR01927 menC_gamma/gm+ o-suc 23.3 5.3E+02 0.011 23.9 8.7 86 129-222 183-270 (307)
195 PF14502 HTH_41: Helix-turn-he 23.2 91 0.002 20.5 2.4 30 266-295 6-37 (48)
196 PRK14453 chloramphenicol/florf 23.2 6.6E+02 0.014 23.9 10.2 95 127-221 203-331 (347)
197 PRK01313 rnpA ribonuclease P; 23.2 4E+02 0.0086 21.4 7.0 49 108-156 61-113 (129)
198 cd03768 SR_ResInv Serine Recom 23.2 1.8E+02 0.0038 22.6 4.8 43 114-158 42-84 (126)
199 cd00956 Transaldolase_FSA Tran 23.2 3.6E+02 0.0079 23.6 7.1 91 108-211 61-157 (211)
200 KOG2019 Metalloendoprotease HM 23.1 8.5E+02 0.019 25.9 10.3 66 266-333 458-530 (998)
201 cd03018 PRX_AhpE_like Peroxire 23.0 2.5E+02 0.0054 22.3 5.8 35 144-179 48-82 (149)
202 PRK09427 bifunctional indole-3 22.9 2E+02 0.0044 28.5 6.0 65 122-192 274-339 (454)
203 PF06506 PrpR_N: Propionate ca 22.8 1.7E+02 0.0037 24.6 4.9 67 144-216 63-132 (176)
204 PF14213 DUF4325: Domain of un 22.8 2.8E+02 0.0061 19.6 5.8 42 45-86 2-49 (74)
205 TIGR00676 fadh2 5,10-methylene 22.7 5.8E+02 0.013 23.2 11.7 107 107-223 69-193 (272)
206 TIGR00190 thiC thiamine biosyn 22.6 2E+02 0.0043 28.0 5.5 90 147-279 123-218 (423)
207 PF13407 Peripla_BP_4: Peripla 22.5 2.9E+02 0.0063 24.1 6.6 72 111-189 14-89 (257)
208 PLN00191 enolase 22.4 7.8E+02 0.017 24.5 10.5 97 108-215 295-394 (457)
209 TIGR01060 eno phosphopyruvate 22.3 7.5E+02 0.016 24.2 10.9 97 108-215 262-363 (425)
210 TIGR01093 aroD 3-dehydroquinat 22.2 5.4E+02 0.012 22.6 10.6 100 108-216 75-186 (228)
211 TIGR03128 RuMP_HxlA 3-hexulose 22.1 5E+02 0.011 22.1 8.1 94 109-214 10-107 (206)
212 cd01821 Rhamnogalacturan_acety 22.1 4.7E+02 0.01 21.9 8.2 61 159-219 36-117 (198)
213 PLN02775 Probable dihydrodipic 22.1 4.7E+02 0.01 24.3 7.8 73 115-192 66-138 (286)
214 TIGR02080 O_succ_thio_ly O-suc 22.0 7.1E+02 0.015 23.8 10.6 87 130-221 91-178 (382)
215 TIGR03278 methan_mark_10 putat 22.0 7.5E+02 0.016 24.1 11.7 111 107-222 53-179 (404)
216 PLN02321 2-isopropylmalate syn 21.9 8.8E+02 0.019 25.3 10.5 106 107-218 104-232 (632)
217 PRK07998 gatY putative fructos 21.9 6.4E+02 0.014 23.3 9.2 23 293-315 199-221 (283)
218 PRK08247 cystathionine gamma-s 21.9 4.9E+02 0.011 24.7 8.4 87 130-222 91-179 (366)
219 TIGR00735 hisF imidazoleglycer 21.9 5.8E+02 0.013 22.8 12.9 84 128-212 168-253 (254)
220 COG2089 SpsE Sialic acid synth 21.9 6.9E+02 0.015 23.7 9.4 62 108-173 157-219 (347)
221 PRK03031 rnpA ribonuclease P; 21.4 4.1E+02 0.0089 20.9 7.1 50 108-157 62-114 (122)
222 PRK00915 2-isopropylmalate syn 21.3 8.5E+02 0.019 24.5 11.7 102 107-217 22-140 (513)
223 COG2069 CdhD CO dehydrogenase/ 21.2 6.9E+02 0.015 23.4 9.5 89 128-220 164-262 (403)
224 TIGR02814 pfaD_fam PfaD family 21.2 4.1E+02 0.0089 26.3 7.6 64 152-216 37-107 (444)
225 COG0800 Eda 2-keto-3-deoxy-6-p 21.1 3.2E+02 0.0069 24.1 6.1 60 144-214 51-111 (211)
226 cd00248 Mth938-like Mth938-lik 20.9 2.7E+02 0.0059 21.5 5.2 50 167-217 38-87 (109)
227 PF01053 Cys_Met_Meta_PP: Cys/ 20.8 3E+02 0.0065 26.7 6.6 81 144-224 104-186 (386)
228 PRK08045 cystathionine gamma-s 20.8 6.5E+02 0.014 24.1 9.0 87 130-221 92-179 (386)
229 PF01381 HTH_3: Helix-turn-hel 20.8 26 0.00055 23.0 -0.5 13 305-317 37-49 (55)
230 CHL00076 chlB photochlorophyll 20.6 8.8E+02 0.019 24.4 12.3 92 128-219 116-248 (513)
231 PRK12331 oxaloacetate decarbox 20.4 4.6E+02 0.01 26.0 7.9 103 107-214 22-141 (448)
232 PRK11194 ribosomal RNA large s 20.4 5.6E+02 0.012 24.7 8.3 88 133-220 221-337 (372)
233 PRK14463 ribosomal RNA large s 20.3 6.7E+02 0.015 23.9 8.8 89 132-220 211-325 (349)
234 PRK01492 rnpA ribonuclease P; 20.3 3.9E+02 0.0084 21.1 6.1 48 108-155 61-114 (118)
235 PRK15122 magnesium-transportin 20.3 5.4E+02 0.012 28.1 9.0 68 267-348 578-649 (903)
236 TIGR01662 HAD-SF-IIIA HAD-supe 20.2 3.8E+02 0.0083 20.8 6.2 38 144-182 27-73 (132)
237 COG0773 MurC UDP-N-acetylmuram 20.1 4.8E+02 0.01 26.0 7.8 29 272-300 112-141 (459)
238 PF13380 CoA_binding_2: CoA bi 20.1 1.8E+02 0.0039 22.7 4.1 19 197-215 90-108 (116)
239 TIGR03239 GarL 2-dehydro-3-deo 20.1 5.4E+02 0.012 23.2 7.7 68 124-193 158-236 (249)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.5e-60 Score=445.14 Aligned_cols=293 Identities=21% Similarity=0.340 Sum_probs=251.3
Q ss_pred ccccccccceeeCCC-CCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcc--hHHHHHHHH
Q 018711 3 SVERDVADEWRVGPY-RPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDG--PAEDLYGIF 79 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG--~sE~~lG~a 79 (351)
.||+||||||.+|.. ...++.++.++|++|++ +|+ ||||||++|| .||++||+|
T Consensus 12 ~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d----------~Gi-------------n~~DTA~~Yg~g~sE~ilG~~ 68 (316)
T COG0667 12 KVSPLGLGTMTLGGDTDDEEEAEAIEILDAALD----------AGI-------------NFFDTADVYGDGRSEEILGEA 68 (316)
T ss_pred eecceeeeccccCCCCCchhhhHHHHHHHHHHH----------cCC-------------CEEECccccCCCchHHHHHHH
Confidence 599999999999873 33555677789999999 999 9999999998 599999999
Q ss_pred HhhcccCCCcccceeeeeecccCC-C---CCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHH
Q 018711 80 INRVRRERPPEFLDKVRGLTKWVP-P---PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK 155 (351)
Q Consensus 80 l~~~~~~r~~~~~~~~~~~~k~~~-~---~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~ 155 (351)
|++.++ |+ ++++++|++..... . ..++++++|+++++.||+|||||||||||+|+||+..+ .+|++++|.+|+
T Consensus 69 l~~~~~-Rd-~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~ 145 (316)
T COG0667 69 LKERGR-RD-KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELV 145 (316)
T ss_pred HhccCC-CC-eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHH
Confidence 999775 55 78887777766542 1 14689999999999999999999999999999999887 799999999999
Q ss_pred HcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccccCCCCCCC
Q 018711 156 EEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIP 235 (351)
Q Consensus 156 ~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~ 235 (351)
++||||+||+||++.+++.++.+...+++++|.+||++++..+.+++++|+++||++++|+||++|+|+|++...
T Consensus 146 ~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~----- 220 (316)
T COG0667 146 REGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG----- 220 (316)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC-----
Confidence 999999999999999999999884357999999999999888888999999999999999999999999998763
Q ss_pred CCCCCCCC-chhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhc
Q 018711 236 FAGPPLNT-PSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNA 314 (351)
Q Consensus 236 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~ 314 (351)
..+.+... +.+..+ ..+....+...+.++|+++|+|++|+||+|++++|.++++|+|+++ ++||++|++
T Consensus 221 ~~~~r~~~~~~~~~~--------~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~--~~qL~en~~ 290 (316)
T COG0667 221 PEGSRASELPRFQRE--------LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASK--AEQLEENLA 290 (316)
T ss_pred cchhhccccccchhh--------hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCC--HHHHHHHHH
Confidence 11111111 111110 1255677788999999999999999999999999999999999999 999999999
Q ss_pred cccCCCCHHHHHHHHHHHhhCC
Q 018711 315 IFMLSLDEDDVNSIQEVTKKGK 336 (351)
Q Consensus 315 a~~~~L~~e~~~~L~~~~~~~~ 336 (351)
+++..|+++++++|++......
T Consensus 291 A~~~~L~~~~~~~l~~~~~~~~ 312 (316)
T COG0667 291 ALDIKLSEEELAALDEISAEEP 312 (316)
T ss_pred HhcCCCCHHHHHHHHHHhhhcc
Confidence 9999999999999998886543
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.8e-60 Score=432.91 Aligned_cols=303 Identities=22% Similarity=0.312 Sum_probs=261.9
Q ss_pred ccccccccceeeCCCCC-cchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcch--HHHHHHHH
Q 018711 3 SVERDVADEWRVGPYRP-GRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGP--AEDLYGIF 79 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~--sE~~lG~a 79 (351)
.||++|||||.+..|+. .+++++.++++.|++ +|+ ||||||++||+ +|+++|++
T Consensus 23 ~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e----------~Gi-------------n~fDtAe~Yg~~~~E~llg~~ 79 (336)
T KOG1575|consen 23 KVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYE----------AGI-------------NFFDTAEVYGNGQSEELLGEF 79 (336)
T ss_pred eecceeecceeeeccccCCCHHHHHHHHHHHHH----------cCC-------------CEEehhhhcCCcccHHHHHHH
Confidence 69999999977655555 489999999999999 999 99999999985 99999999
Q ss_pred HhhcccCCCcccceeeeeecccC-CCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC
Q 018711 80 INRVRRERPPEFLDKVRGLTKWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 158 (351)
Q Consensus 80 l~~~~~~r~~~~~~~~~~~~k~~-~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G 158 (351)
|++.+..|+ .+++++|++...+ ..+.+.++..+...++.|+++||+|||||||+||+|+..| ++|++++|.+++++|
T Consensus 80 i~~~~~~R~-~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~G 157 (336)
T KOG1575|consen 80 IKSRGWRRD-KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQG 157 (336)
T ss_pred HHhcCCcCC-cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcC
Confidence 999887787 7777777665442 2256789999999999999999999999999999999999 899999999999999
Q ss_pred cccEEEeccccHHHHHHHHHc-CCCeeeeeeeccccCcCc-hhhHHHHHHHhCCcEEEeccccccccCccccCCCCCCCC
Q 018711 159 KIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPF 236 (351)
Q Consensus 159 kir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~-~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~~ 236 (351)
||||||+|+++.+++.++... .++++++|++||++.|.. +.+++++|++.||++++|+||++|+|||+++.. ...+.
T Consensus 158 ki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~-e~~~~ 236 (336)
T KOG1575|consen 158 KIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLG-EDSRN 236 (336)
T ss_pred ceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccc-ccccc
Confidence 999999999999999999885 467999999999999995 556999999999999999999999999998865 23444
Q ss_pred CCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccc
Q 018711 237 AGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 316 (351)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~ 316 (351)
.+.+.....+ .+++...+....+++++.++|+++|+|++|+||+|+++++.++++|||+++ ++||+||++|+
T Consensus 237 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~--ve~l~eni~Al 308 (336)
T KOG1575|consen 237 GDKRFQFLGL------SPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASK--IEQLKENIGAL 308 (336)
T ss_pred cccccccccc------ccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCc--HHHHHHHHhhh
Confidence 4433332221 112211145677889999999999999999999999999999999999999 99999999999
Q ss_pred cCCCCHHHHHHHHHHHhhCCCCC
Q 018711 317 MLSLDEDDVNSIQEVTKKGKDLL 339 (351)
Q Consensus 317 ~~~L~~e~~~~L~~~~~~~~~~~ 339 (351)
.+.|+++++.+|+++.+....+.
T Consensus 309 ~~~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 309 SVKLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred hccCCHHHHHHHHHhhccccCcC
Confidence 99999999999999998876543
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.2e-56 Score=401.12 Aligned_cols=252 Identities=21% Similarity=0.292 Sum_probs=218.0
Q ss_pred ccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcchHHHHHHHHHhh
Q 018711 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGPAEDLYGIFINR 82 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~sE~~lG~al~~ 82 (351)
.|+.||||||+++. ...+.++++.|++ .|. |+||||.+|| +|+.+|+|+++
T Consensus 13 ~iP~iGlGt~~~~~-----~~~~~~av~~Al~----------~Gy-------------r~IDTA~~Yg-nE~~VG~aI~~ 63 (280)
T COG0656 13 EIPAIGLGTWQIGD-----DEWAVRAVRAALE----------LGY-------------RLIDTAEIYG-NEEEVGEAIKE 63 (280)
T ss_pred cccCcceEeeecCC-----chhHHHHHHHHHH----------hCc-------------ceEecHhHhc-CHHHHHHHHHh
Confidence 48899999999865 1226666666666 666 9999999999 58899999999
Q ss_pred cccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCC-CccHHHHHHHHHHHHHcCccc
Q 018711 83 VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIK 161 (351)
Q Consensus 83 ~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~-~~~~~e~~~al~~l~~~Gkir 161 (351)
....|+ .+|++||.|+. +++++.+.+++++||++||+||||||+||||.+. ...+.|+|++|++++++||||
T Consensus 64 s~v~Re-----elFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir 136 (280)
T COG0656 64 SGVPRE-----ELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIR 136 (280)
T ss_pred cCCCHH-----HeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCcc
Confidence 655555 77889999887 5689999999999999999999999999999764 221679999999999999999
Q ss_pred EEEeccccHHHHHHHHHc-CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccc-cCccccCCCCCCCCCCC
Q 018711 162 TVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL-LSEKFLDTNLSIPFAGP 239 (351)
Q Consensus 162 ~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~-L~g~~~~~~~~~~~~~~ 239 (351)
+||||||+...++++++. ++.|+++|++|||..+.++ ++++|+++||.+++|+||++|. +-.
T Consensus 137 ~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~~~~gI~v~AysPL~~g~~l~~-------------- 200 (280)
T COG0656 137 AIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFCQRHGIAVEAYSPLAKGGKLLD-------------- 200 (280)
T ss_pred EEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHH--HHHHHHHcCCEEEEECCccccccccc--------------
Confidence 999999999999999986 6789999999999887764 9999999999999999999753 211
Q ss_pred CCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccCC
Q 018711 240 PLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLS 319 (351)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~ 319 (351)
.+.+.++|+++|.|++|++|+|+++++ .++||.+++ ++|+++|++++++.
T Consensus 201 --------------------------~~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~--~~ri~eN~~~~~f~ 250 (280)
T COG0656 201 --------------------------NPVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTT--PERIRENLAAFDFE 250 (280)
T ss_pred --------------------------ChHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCC--HHHHHHHHhhhcCC
Confidence 168999999999999999999999999 456677766 99999999999999
Q ss_pred CCHHHHHHHHHHHhhCC
Q 018711 320 LDEDDVNSIQEVTKKGK 336 (351)
Q Consensus 320 L~~e~~~~L~~~~~~~~ 336 (351)
||++||+.|+++.....
T Consensus 251 Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 251 LSEEDMAAIDALDRGYG 267 (280)
T ss_pred CCHHHHHHHHhhccccC
Confidence 99999999999998663
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.2e-55 Score=411.05 Aligned_cols=294 Identities=17% Similarity=0.196 Sum_probs=233.7
Q ss_pred ccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcc--hHHHHHHHHH
Q 018711 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDG--PAEDLYGIFI 80 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG--~sE~~lG~al 80 (351)
+||+||||||+++.+ ..+++++.++|+.|++ .|+ |+||||++|| .||++||+||
T Consensus 10 ~vs~lglGt~~~~g~-~~~~~~a~~~l~~al~----------~Gi-------------~~~DTA~~Yg~g~sE~~lG~~l 65 (317)
T TIGR01293 10 RVSCLGLGTWVTFGG-QISDEMAEQLLTLAYE----------NGI-------------NLFDTAEVYAAGKAEVVLGNIL 65 (317)
T ss_pred eecceeecCCccCCC-CCCHHHHHHHHHHHHH----------cCC-------------CeEECccccCCCccHHHHHHHH
Confidence 599999999984221 3456778888888888 888 9999999997 5999999999
Q ss_pred hhcccCCCcccceeeeeecccC-CCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc
Q 018711 81 NRVRRERPPEFLDKVRGLTKWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 159 (351)
Q Consensus 81 ~~~~~~r~~~~~~~~~~~~k~~-~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk 159 (351)
++....|+ ++++++|+..... ....+++++.+++++++||++|||||||+|++|+|++..+ +++++++|++|+++||
T Consensus 66 ~~~~~~R~-~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGWRRS-SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCCCcc-cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCC
Confidence 86432355 6666666532111 1123578999999999999999999999999999998776 8899999999999999
Q ss_pred ccEEEeccccHHHHHHHHH----cC-CCeeeeeeeccccCcCc-hhhHHHHHHHhCCcEEEeccccccccCccccCCCCC
Q 018711 160 IKTVALTNFDTERLRIILE----NG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLS 233 (351)
Q Consensus 160 ir~iGvS~~~~~~l~~~~~----~~-~~~~~~q~~~n~~~~~~-~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~ 233 (351)
||+||||||+.+++.++.. .+ ++++++|++||++++.. +..++++|+++||++++|+||++|+|++++...
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~--- 220 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG--- 220 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC---
Confidence 9999999999999877654 22 57889999999999874 678999999999999999999999999987542
Q ss_pred CCCCCCCCCCchhHHHHhhhhccCC--chhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHH
Q 018711 234 IPFAGPPLNTPSLQKYKRMVDAWGG--WSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQD 311 (351)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~e 311 (351)
.|.+. +...+.+.++. ..+.. .....+.++.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++
T Consensus 221 ~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~--~~ql~e 294 (317)
T TIGR01293 221 IPPYS-RATLKGYQWLK---DKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASS--AEQLME 294 (317)
T ss_pred CCCcc-cccccccchhh---hhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHH
Confidence 12211 11101011110 00100 012445667899999999999999999999999999999999999 999999
Q ss_pred hhccccC--CCCHHHHHHHHHH
Q 018711 312 TNAIFML--SLDEDDVNSIQEV 331 (351)
Q Consensus 312 nl~a~~~--~L~~e~~~~L~~~ 331 (351)
|++++++ +||++++++|+++
T Consensus 295 n~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 295 NLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHhhccCCCCHHHHHHHHhh
Confidence 9999987 9999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2e-54 Score=410.73 Aligned_cols=297 Identities=20% Similarity=0.298 Sum_probs=236.3
Q ss_pred cccccccccee-eCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcch----HHHHHH
Q 018711 3 SVERDVADEWR-VGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGP----AEDLYG 77 (351)
Q Consensus 3 ~vs~ig~Gt~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~----sE~~lG 77 (351)
.||+||||||+ +|. ..+.+++.++|+.|++ .|+ ||||||+.||+ ||++||
T Consensus 24 ~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~----------~Gi-------------n~~DTA~~YG~~~g~sE~~lG 78 (346)
T PRK09912 24 RLPALSLGLWHNFGH--VNALESQRAILRKAFD----------LGI-------------THFDLANNYGPPPGSAEENFG 78 (346)
T ss_pred ccccccccCccccCC--CCCHHHHHHHHHHHHH----------CCC-------------CEEEChhhhCCCCCCcHHHHH
Confidence 69999999997 443 2344566788888888 888 99999999983 999999
Q ss_pred HHHhhcc-cCCCcccceeeeeecccCCC--CCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHH
Q 018711 78 IFINRVR-RERPPEFLDKVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDL 154 (351)
Q Consensus 78 ~al~~~~-~~r~~~~~~~~~~~~k~~~~--~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l 154 (351)
++|++.. ..|+ ++++++|++...++. +.+.+++.+++++++||++|||||||+|++|+|++..+ +++++++|++|
T Consensus 79 ~~l~~~~~~~Rd-~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l 156 (346)
T PRK09912 79 RLLREDFAAYRD-ELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHA 156 (346)
T ss_pred HHHHhcccCCCC-eEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHH
Confidence 9998641 1245 677777765422222 22468999999999999999999999999999998776 89999999999
Q ss_pred HHcCcccEEEeccccHHHHHHHHH----cCCCeeeeeeeccccCcCch-hhHHHHHHHhCCcEEEeccccccccCccccC
Q 018711 155 KEEGKIKTVALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLD 229 (351)
Q Consensus 155 ~~~Gkir~iGvS~~~~~~l~~~~~----~~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~gi~via~~pl~~G~L~g~~~~ 229 (351)
+++||||+||||||++++++++.+ .+++++++|++||++++..+ .+++++|+++||++++|+||++|+|++++..
T Consensus 157 ~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~ 236 (346)
T PRK09912 157 VQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLN 236 (346)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCC
Confidence 999999999999999998876654 25678999999999998754 4799999999999999999999999998754
Q ss_pred CCCCCCCCCCCCC--CchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHh
Q 018711 230 TNLSIPFAGPPLN--TPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAE 307 (351)
Q Consensus 230 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~ 307 (351)
.. |.. .+.. ......+ ..++. .+...++.+.+.++|+++|+|++|+||+|++++|.|+++|+|+++ ++
T Consensus 237 ~~---~~~-~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~--~~ 306 (346)
T PRK09912 237 GI---PQD-SRMHREGNKVRGL---TPKML-TEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASR--AE 306 (346)
T ss_pred CC---CCC-ccccccccchhhh---chhhc-cHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCC--HH
Confidence 32 211 1110 0000001 01110 123345668899999999999999999999999999999999999 99
Q ss_pred HHHHhhccc-cCCCCHHHHHHHHHHHhhCC
Q 018711 308 HIQDTNAIF-MLSLDEDDVNSIQEVTKKGK 336 (351)
Q Consensus 308 ~l~enl~a~-~~~L~~e~~~~L~~~~~~~~ 336 (351)
||++|++++ +++|+++++++|+++.++..
T Consensus 307 ql~en~~a~~~~~L~~e~~~~l~~~~~~~~ 336 (346)
T PRK09912 307 QLEENVQALNNLTFSTEELAQIDQHIADGE 336 (346)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHhhCccc
Confidence 999999998 47999999999999986543
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.8e-53 Score=404.65 Aligned_cols=292 Identities=21% Similarity=0.298 Sum_probs=233.6
Q ss_pred ccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcc---------hHH
Q 018711 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDG---------PAE 73 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG---------~sE 73 (351)
.||+||||||++|. ..+.+++.++|+.|++ .|+ ||||||+.|| .||
T Consensus 12 ~vs~iglGt~~~g~--~~~~~~a~~~l~~al~----------~Gi-------------~~~DTA~~Yg~~~~~~~~g~sE 66 (346)
T PRK10625 12 EVSTLGLGTMTFGE--QNSEADAHAQLDYAVA----------QGI-------------NLIDVAEMYPVPPRPETQGLTE 66 (346)
T ss_pred ccccEeEeccccCC--CCCHHHHHHHHHHHHH----------cCC-------------CEEECccccCCCcCCCCCCchH
Confidence 59999999999875 3456778888888888 888 9999999995 499
Q ss_pred HHHHHHHhhcccCCCcccceeeeeecccCC------CCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCC-------
Q 018711 74 DLYGIFINRVRRERPPEFLDKVRGLTKWVP------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS------- 140 (351)
Q Consensus 74 ~~lG~al~~~~~~r~~~~~~~~~~~~k~~~------~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~------- 140 (351)
+++|++|++.. .|+ ++++++|+...... ...+++++.+++++++||++|||||||||++|||++.
T Consensus 67 ~~iG~aL~~~~-~R~-~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~ 144 (346)
T PRK10625 67 TYIGNWLAKRG-SRE-KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKL 144 (346)
T ss_pred HHHHHHHhhcC-Ccc-eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccc
Confidence 99999998643 344 55555554321100 0124689999999999999999999999999999752
Q ss_pred ----------CccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHH----cC-CCeeeeeeeccccCcCchhhHHHHH
Q 018711 141 ----------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NG-IPVVSNQVQHSVVDMRPQQKMAELC 205 (351)
Q Consensus 141 ----------~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~----~~-~~~~~~q~~~n~~~~~~~~~~l~~~ 205 (351)
.+ ++++|++|++|+++||||+||+|||+.+++.+++. .+ ..++++|++||++++..+.+++++|
T Consensus 145 ~~~~~~~~~~~~-~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~ 223 (346)
T PRK10625 145 GYSWTDSAPAVS-LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVS 223 (346)
T ss_pred ccccccccCCCC-HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHH
Confidence 23 78999999999999999999999999998877654 23 3588999999999988777899999
Q ss_pred HHhCCcEEEeccccccccCccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHH
Q 018711 206 QLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAV 285 (351)
Q Consensus 206 ~~~gi~via~~pl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL 285 (351)
+++||++++|+||++|+|+|++.... .|.. .+ ...+..+ ..+ ..+....+.+.++++|+++|+|++|+||
T Consensus 224 ~~~gi~via~spL~~G~Ltg~~~~~~--~~~~-~~--~~~~~~~----~~~-~~~~~~~~~~~l~~la~~~g~t~aqval 293 (346)
T PRK10625 224 QYEGVELLAYSCLAFGTLTGKYLNGA--KPAG-AR--NTLFSRF----TRY-SGEQTQKAVAAYVDIAKRHGLDPAQMAL 293 (346)
T ss_pred HHcCCeEEEeccccCeeccCCCCCCC--CCCC-cc--ccccccc----ccc-cchhHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999875421 1111 01 0001111 001 1133455678899999999999999999
Q ss_pred HHHHhCCCceeeeeccCCCcHhHHHHhhccccCCCCHHHHHHHHHHHhh
Q 018711 286 RYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 334 (351)
Q Consensus 286 ~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~L~~e~~~~L~~~~~~ 334 (351)
+|++++|.|+++|+|+++ ++||++|+++.+++|++++++.|+++.+.
T Consensus 294 ~w~l~~~~v~~~I~G~~~--~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 294 AFVRRQPFVASTLLGATT--MEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred HHHHhCCCCeeEEeCCCC--HHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 999999999999999999 99999999999999999999999999853
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.4e-53 Score=394.81 Aligned_cols=279 Identities=27% Similarity=0.433 Sum_probs=229.2
Q ss_pred cccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCc--chHHHHHHHHHhhc
Q 018711 6 RDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWD--GPAEDLYGIFINRV 83 (351)
Q Consensus 6 ~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~Y--G~sE~~lG~al~~~ 83 (351)
+||||||++|.. ..+++++.++|+.|++ .|+ |+||||+.| |.||+.||++|++.
T Consensus 1 ~l~lG~~~~~~~-~~~~~~~~~~l~~a~~----------~Gi-------------n~~DtA~~Y~~g~sE~~lg~~l~~~ 56 (283)
T PF00248_consen 1 PLGLGTWRLGGE-RVSEEEAEAILRRALE----------AGI-------------NFFDTADSYGNGRSERILGRALRKS 56 (283)
T ss_dssp SBEEECTTBTTT-TSTHHHHHHHHHHHHH----------TT---------------EEEECGGGGGGTHHHHHHHHHHHT
T ss_pred CEEEEccccCCC-CCCHHHHHHHHHHHHH----------cCC-------------Ceecccccccccccccccccccccc
Confidence 689999999764 6788999999999999 999 999999999 66999999999994
Q ss_pred ccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEE
Q 018711 84 RRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 163 (351)
Q Consensus 84 ~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~i 163 (351)
+..|+ ++++.+|+ .........++++.+++++++||++||+||||+|++|+|+.......++|++|++|+++||||+|
T Consensus 57 ~~~r~-~~~i~tK~-~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~i 134 (283)
T PF00248_consen 57 RVPRD-DIFISTKV-YGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHI 134 (283)
T ss_dssp SSTGG-GSEEEEEE-ESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccc-cccccccc-cccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccc
Confidence 44444 66666666 11122334689999999999999999999999999999998776679999999999999999999
Q ss_pred EeccccHHHHHHHHHc-CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccccCCCCCCCCCCCCCC
Q 018711 164 ALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLN 242 (351)
Q Consensus 164 GvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~~~~~~~~ 242 (351)
|||||+++.++++... .++|+++|++||++++....+++++|+++||++++|+||++|+|++++.......+....
T Consensus 135 Gvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~--- 211 (283)
T PF00248_consen 135 GVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL--- 211 (283)
T ss_dssp EEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS---
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc---
Confidence 9999999999999654 478999999999997778889999999999999999999999999877654321111100
Q ss_pred CchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccCCCCH
Q 018711 243 TPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDE 322 (351)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~L~~ 322 (351)
.......+.+.++++++|+|++|+||+|++++|.+.++|+|+++ ++|+++|+++++++||+
T Consensus 212 -----------------~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~--~~~l~en~~a~~~~L~~ 272 (283)
T PF00248_consen 212 -----------------RDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASS--PEHLEENLAALDFPLTE 272 (283)
T ss_dssp -----------------STHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SS--HHHHHHHHGGSSSG--H
T ss_pred -----------------chhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCC--HHHHHHHHHHhCCCCCH
Confidence 00223347899999999999999999999999999999999999 99999999999899999
Q ss_pred HHHHHHHHHH
Q 018711 323 DDVNSIQEVT 332 (351)
Q Consensus 323 e~~~~L~~~~ 332 (351)
+++++|+++.
T Consensus 273 ~~~~~i~~~~ 282 (283)
T PF00248_consen 273 EELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHHHhhh
Confidence 9999999865
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=5e-53 Score=396.55 Aligned_cols=278 Identities=18% Similarity=0.281 Sum_probs=228.2
Q ss_pred ccccccccceeeCC-CCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcch--HHHHHHHH
Q 018711 3 SVERDVADEWRVGP-YRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGP--AEDLYGIF 79 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~--sE~~lG~a 79 (351)
+||+||||||+||. |+..+++++.++|+.|++ .|+ ||||||+.||. ||+.+|++
T Consensus 10 ~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~----------~Gi-------------n~~DTA~~Yg~g~sE~~lG~a 66 (314)
T PLN02587 10 KVSSVGFGASPLGSVFGPVSEEDAIASVREAFR----------LGI-------------NFFDTSPYYGGTLSEKVLGKA 66 (314)
T ss_pred cccCcccccccccCCCCCCCHHHHHHHHHHHHH----------cCC-------------CEEECcCccCCCchHHHHHHH
Confidence 69999999999975 555677788888888888 888 99999999976 99999999
Q ss_pred HhhcccCCCcccceeeeeecccCC--CCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCC--ccHHHHHHHHHHHH
Q 018711 80 INRVRRERPPEFLDKVRGLTKWVP--PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN--PGYLDALNHLTDLK 155 (351)
Q Consensus 80 l~~~~~~r~~~~~~~~~~~~k~~~--~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~--~~~~e~~~al~~l~ 155 (351)
|++.+..|+ ++++ .||+++ .+.+++++.+++++++||++|||||||+|++|+|+... ..++++|++|++|+
T Consensus 67 l~~~~~~R~-~v~I----~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~ 141 (314)
T PLN02587 67 LKALGIPRE-KYVV----STKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLK 141 (314)
T ss_pred HHhCCCCcc-eEEE----EeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHH
Confidence 987544455 4544 555432 12357899999999999999999999999999997532 12578999999999
Q ss_pred HcCcccEEEeccccHHHHHHHHHc---C-CCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccccCCC
Q 018711 156 EEGKIKTVALTNFDTERLRIILEN---G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTN 231 (351)
Q Consensus 156 ~~Gkir~iGvS~~~~~~l~~~~~~---~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~ 231 (351)
++||||+||+|||+.++++.+.+. + +.+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++....
T Consensus 142 ~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~- 219 (314)
T PLN02587 142 ESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE- 219 (314)
T ss_pred HCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-
Confidence 999999999999999888777652 1 34556789999877544 48999999999999999999999999863110
Q ss_pred CCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHH
Q 018711 232 LSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQD 311 (351)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~e 311 (351)
..+ ..+.+..+.+.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++
T Consensus 220 ----------~~~-------------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~--~~~l~~ 274 (314)
T PLN02587 220 ----------WHP-------------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNS--VQQVEE 274 (314)
T ss_pred ----------CCC-------------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCC--HHHHHH
Confidence 000 0123445567889999999999999999999999999999999999 999999
Q ss_pred hhcccc----CCCCHHHHHHHHHHHhhC
Q 018711 312 TNAIFM----LSLDEDDVNSIQEVTKKG 335 (351)
Q Consensus 312 nl~a~~----~~L~~e~~~~L~~~~~~~ 335 (351)
|+++++ .+|+++++++|+++.+..
T Consensus 275 nl~a~~~~~~~~l~~~~~~~l~~~~~~~ 302 (314)
T PLN02587 275 NVAAATELETSGIDEELLSEVEAILAPV 302 (314)
T ss_pred HHHHHhhcccCCCCHHHHHHHHHhhccc
Confidence 999975 379999999999998643
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.6e-53 Score=388.48 Aligned_cols=251 Identities=17% Similarity=0.236 Sum_probs=213.9
Q ss_pred ccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcchHHHHHHHHHhh
Q 018711 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGPAEDLYGIFINR 82 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~sE~~lG~al~~ 82 (351)
.||+||||||+++. +++.+.|+.|++ .|+ ||||||+.|| +|+.+|++|++
T Consensus 2 ~vs~lglGt~~~~~------~~~~~~i~~A~~----------~Gi-------------~~~DTA~~Yg-~E~~lG~al~~ 51 (267)
T PRK11172 2 SIPAFGLGTFRLKD------QVVIDSVKTALE----------LGY-------------RAIDTAQIYD-NEAAVGQAIAE 51 (267)
T ss_pred CCCCEeeEccccCh------HHHHHHHHHHHH----------cCC-------------CEEEccchhC-CHHHHHHHHHH
Confidence 59999999998743 557777777777 777 9999999999 59999999986
Q ss_pred cccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCC-CccHHHHHHHHHHHHHcCccc
Q 018711 83 VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIK 161 (351)
Q Consensus 83 ~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~-~~~~~e~~~al~~l~~~Gkir 161 (351)
.+..|+ ++ ++.||.++. +.+++.+++++++||++||+||||+|++|+|++. ..+.+++|++|++|+++||||
T Consensus 52 ~~~~R~-~v----~i~TK~~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir 124 (267)
T PRK11172 52 SGVPRD-EL----FITTKIWID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTR 124 (267)
T ss_pred cCCChh-He----EEEEEeCCC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 433344 44 445554432 4689999999999999999999999999999764 123689999999999999999
Q ss_pred EEEeccccHHHHHHHHHc-C-CCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccccCCCCCCCCCCC
Q 018711 162 TVALTNFDTERLRIILEN-G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGP 239 (351)
Q Consensus 162 ~iGvS~~~~~~l~~~~~~-~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~~~~~ 239 (351)
+||||||+.++++++++. + .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 125 ~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~------------- 189 (267)
T PRK11172 125 EIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD------------- 189 (267)
T ss_pred EEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-------------
Confidence 999999999999998874 3 3689999999998764 5899999999999999999999854210
Q ss_pred CCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccCC
Q 018711 240 PLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLS 319 (351)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~ 319 (351)
+.+.++|+++|+|++|+||+|+++++. ++|+|+++ ++|+++|+++++++
T Consensus 190 ---------------------------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~--~~~l~~n~~~~~~~ 238 (267)
T PRK11172 190 ---------------------------PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTK--RENLASNLLAQDLQ 238 (267)
T ss_pred ---------------------------HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCC--HHHHHHHHhhcCCC
Confidence 468899999999999999999999973 58999999 99999999999999
Q ss_pred CCHHHHHHHHHHHhhCC
Q 018711 320 LDEDDVNSIQEVTKKGK 336 (351)
Q Consensus 320 L~~e~~~~L~~~~~~~~ 336 (351)
||++++++|+++.++.+
T Consensus 239 L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 239 LDAEDMAAIAALDRNGR 255 (267)
T ss_pred cCHHHHHHHhhhccCCc
Confidence 99999999999986644
No 10
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=8e-53 Score=390.19 Aligned_cols=268 Identities=17% Similarity=0.110 Sum_probs=220.0
Q ss_pred cccccccccceeeCC--------CCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcchHH
Q 018711 2 QSVERDVADEWRVGP--------YRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGPAE 73 (351)
Q Consensus 2 ~~vs~ig~Gt~~~g~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~sE 73 (351)
..||+||||||++|. |+..+++++.++|+.|++ .|+ ||||||+.||.||
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~----------~Gi-------------n~~DTA~~YG~SE 59 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAAR----------AGL-------------SVLDASGLFGRAE 59 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHH----------cCC-------------CEEecchhhhhHH
Confidence 369999999999984 456788889999999888 899 9999999999999
Q ss_pred HHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCC-CccHHHHHHHHH
Q 018711 74 DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLT 152 (351)
Q Consensus 74 ~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~-~~~~~e~~~al~ 152 (351)
+++|++|+.. .+. .++ +.||.. +.+++.+++++++||++|||||||+|++|+|++. .+..++++++|+
T Consensus 60 ~~lG~al~~~--~~~-~~~----i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~ 128 (292)
T PRK14863 60 TVLGQLIPRP--VPF-RVT----LSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQ 128 (292)
T ss_pred HHHhhhhccC--Cce-Eee----cccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHH
Confidence 9999999742 122 233 344431 3478999999999999999999999999999763 332367899999
Q ss_pred HHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcCch-hhHHHHHHHhCCcEEEeccccccccCccccCCC
Q 018711 153 DLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTN 231 (351)
Q Consensus 153 ~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~ 231 (351)
+|+++||||+||||||+++++..+.. ..+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++....
T Consensus 129 ~l~~~Gkir~iGvSn~~~~~~~~~~~-~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~-- 205 (292)
T PRK14863 129 ALKDQGLFAKIGVSAHASDDPVGVAR-RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR-- 205 (292)
T ss_pred HHHHcCCcceEeeeccCHHHHHHHHh-cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc--
Confidence 99999999999999999999888765 4589999999999998764 4799999999999999999999999642100
Q ss_pred CCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHH
Q 018711 232 LSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQD 311 (351)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~e 311 (351)
.+ ..+ ......+..+.+++++.++|++|+||+|++++|.|+++|+|+++ ++||++
T Consensus 206 --~~--------~~~-------------~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~--~~ql~~ 260 (292)
T PRK14863 206 --VP--------AQL-------------KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNS--AAELSA 260 (292)
T ss_pred --Cc--------cch-------------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCC--HHHHHH
Confidence 00 000 01123346677788888999999999999999999999999999 999999
Q ss_pred hhccccCCCCHHHHHHHHHH
Q 018711 312 TNAIFMLSLDEDDVNSIQEV 331 (351)
Q Consensus 312 nl~a~~~~L~~e~~~~L~~~ 331 (351)
|+++.+.+++++.+++|..-
T Consensus 261 n~~a~~~~~~~~~~~~l~~~ 280 (292)
T PRK14863 261 VVAAASSPPPDLDWDDMAID 280 (292)
T ss_pred HHHHHhcCCCccchhhccCC
Confidence 99999889999888776543
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9.4e-51 Score=376.31 Aligned_cols=273 Identities=26% Similarity=0.445 Sum_probs=230.7
Q ss_pred cccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcch--HHHHHHHH
Q 018711 2 QSVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGP--AEDLYGIF 79 (351)
Q Consensus 2 ~~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~--sE~~lG~a 79 (351)
..||+||||||.+|... .+++++.++|+.|++ .|+ |+||||+.||. ||+.+|++
T Consensus 9 ~~vs~lg~G~~~~~~~~-~~~~~~~~~l~~A~~----------~Gi-------------~~iDTA~~Yg~g~sE~~lG~a 64 (285)
T cd06660 9 LKVSRLGLGTWQLGGGY-VDEEEAAAAVRAALD----------AGI-------------NFIDTADVYGDGESEELLGEA 64 (285)
T ss_pred ceecCcceeccccCCCC-CCHHHHHHHHHHHHH----------cCC-------------CeEECccccCCCCCHHHHHHH
Confidence 36999999999986422 466788888888888 888 99999999987 99999999
Q ss_pred HhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc
Q 018711 80 INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 159 (351)
Q Consensus 80 l~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk 159 (351)
|++.+ .|+ ++++++|+..... ...+++++.+++++++||++||+||||+|+||+|+.......++|++|++++++||
T Consensus 65 l~~~~-~R~-~~~i~tK~~~~~~-~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ 141 (285)
T cd06660 65 LKERG-PRE-EVFIATKVGPRPG-DGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGK 141 (285)
T ss_pred HhccC-CcC-cEEEEeeecCCCC-CCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99876 344 5555444433211 11347999999999999999999999999999998765557999999999999999
Q ss_pred ccEEEeccccHHHHHHHHHc-CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccccCCCCCCCCCC
Q 018711 160 IKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAG 238 (351)
Q Consensus 160 ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~~~~ 238 (351)
||+||||+|+++.+.++++. ..+|+++|++||++++..+.+++++|+++||++++|+||++|.|+++......
T Consensus 142 ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~------ 215 (285)
T cd06660 142 IRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAP------ 215 (285)
T ss_pred ccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCC------
Confidence 99999999999999999885 36899999999999988776899999999999999999999998765432110
Q ss_pred CCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccC
Q 018711 239 PPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 318 (351)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~ 318 (351)
.+ .......+..++.+++++++|+||+|++++|.++++|+|+++ ++||++|+++...
T Consensus 216 ----~~-----------------~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~--~~~l~~n~~~~~~ 272 (285)
T cd06660 216 ----PP-----------------EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASS--PERLEENLAALDF 272 (285)
T ss_pred ----CC-----------------hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHHHHhhccC
Confidence 00 001347789999999999999999999999999999999999 9999999999988
Q ss_pred CCCHHHHHHHHH
Q 018711 319 SLDEDDVNSIQE 330 (351)
Q Consensus 319 ~L~~e~~~~L~~ 330 (351)
+|++++++.|++
T Consensus 273 ~L~~~~~~~l~~ 284 (285)
T cd06660 273 ELSDEDLAALDA 284 (285)
T ss_pred CCCHHHHHHHhh
Confidence 999999999975
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.7e-50 Score=373.71 Aligned_cols=260 Identities=15% Similarity=0.199 Sum_probs=216.8
Q ss_pred ccccccccceeeCC---CCC-cchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcch--HHHHH
Q 018711 3 SVERDVADEWRVGP---YRP-GRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGP--AEDLY 76 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~---~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~--sE~~l 76 (351)
+||+||||||++|. |+. .+++++.++|+.|++ .|+ ||||||+.||+ +|+++
T Consensus 16 ~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~----------~Gi-------------n~~DTA~~Yg~~~sE~~l 72 (290)
T PRK10376 16 SVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVA----------LGV-------------NHIDTSDFYGPHVTNQLI 72 (290)
T ss_pred eecccceeccccCCCCcCCCCCCHHHHHHHHHHHHH----------cCC-------------CeEEChhhcCCCcHHHHH
Confidence 59999999999974 543 356678888888888 888 99999999976 89999
Q ss_pred HHHHhhcccCCCcccceeeeeecccCC---CCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCC----CCCccHHHHHH
Q 018711 77 GIFINRVRRERPPEFLDKVRGLTKWVP---PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD----YSNPGYLDALN 149 (351)
Q Consensus 77 G~al~~~~~~r~~~~~~~~~~~~k~~~---~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~----~~~~~~~e~~~ 149 (351)
|++++. . |+ ++++++|++..... ...+.+++.+++++++||++|||||||+|++|+++ |....++++|+
T Consensus 73 g~~l~~-~--R~-~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~ 148 (290)
T PRK10376 73 REALHP-Y--PD-DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLT 148 (290)
T ss_pred HHHHhc-C--CC-eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHH
Confidence 999964 2 33 66666665432111 12357899999999999999999999999999852 11223789999
Q ss_pred HHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccccC
Q 018711 150 HLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLD 229 (351)
Q Consensus 150 al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~ 229 (351)
+|++|+++||||+||||||+.+++.++.+. .+++++|++||++++.. .+++++|+++||++++|+||+++..
T Consensus 149 ~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~------ 220 (290)
T PRK10376 149 VLAELQRQGLVRHIGLSNVTPTQVAEARKI-AEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP------ 220 (290)
T ss_pred HHHHHHHCCceeEEEecCCCHHHHHHHHhh-CCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh------
Confidence 999999999999999999999999998874 36899999999998764 5799999999999999999974210
Q ss_pred CCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHH
Q 018711 230 TNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHI 309 (351)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l 309 (351)
. ..+.+.++|+++|+|++|+||+|+++++.+.++|+|+++ ++|+
T Consensus 221 --------------------------------~--~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~--~~~l 264 (290)
T PRK10376 221 --------------------------------L--QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSS--VAHL 264 (290)
T ss_pred --------------------------------h--hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCC--HHHH
Confidence 0 016788999999999999999999999777789999999 9999
Q ss_pred HHhhccccCCCCHHHHHHHHHHHh
Q 018711 310 QDTNAIFMLSLDEDDVNSIQEVTK 333 (351)
Q Consensus 310 ~enl~a~~~~L~~e~~~~L~~~~~ 333 (351)
++|+++.+++|++++++.|+++.+
T Consensus 265 ~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 265 RENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999865
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=5.6e-50 Score=368.61 Aligned_cols=251 Identities=18% Similarity=0.296 Sum_probs=212.9
Q ss_pred ccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcchHHHHHHHHHhh
Q 018711 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGPAEDLYGIFINR 82 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~sE~~lG~al~~ 82 (351)
+||+||||||+++ .+++.+.|+.|++ .|+ ||||||+.|| +|+.+|+||++
T Consensus 14 ~v~~lglG~~~~~------~~~~~~~l~~A~~----------~Gi-------------~~~DTA~~Yg-~E~~lG~al~~ 63 (275)
T PRK11565 14 VMPQLGLGVWQAS------NEEVITAIHKALE----------VGY-------------RSIDTAAIYK-NEEGVGKALKE 63 (275)
T ss_pred ccCCcceECccCC------HHHHHHHHHHHHH----------hCC-------------CEEEchhhhC-CHHHHHHHHHH
Confidence 5899999999863 3667788888888 888 9999999999 58999999987
Q ss_pred cccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccE
Q 018711 83 VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 162 (351)
Q Consensus 83 ~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~ 162 (351)
.+..|+ ++++ .||.++ .+++.+++++++||++||+||||+|++|+|++....+.++|++|++|+++||||+
T Consensus 64 ~~~~R~-~~~i----~tK~~~----~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~ 134 (275)
T PRK11565 64 ASVARE-ELFI----TTKLWN----DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKS 134 (275)
T ss_pred cCCCHH-HEEE----EEEecC----cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeE
Confidence 543454 4444 555432 2578999999999999999999999999998765447899999999999999999
Q ss_pred EEeccccHHHHHHHHHc-CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccccCCCCCCCCCCCCC
Q 018711 163 VALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPL 241 (351)
Q Consensus 163 iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~~~~~~~ 241 (351)
||||||++++++++++. ++++.++|++||++.+. .+++++|+++||++++|+||++|.- +.+
T Consensus 135 iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~~~-------------- 197 (275)
T PRK11565 135 IGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-GVF-------------- 197 (275)
T ss_pred EeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-ccc--------------
Confidence 99999999999998864 57789999999998754 5799999999999999999987620 000
Q ss_pred CCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccCCCC
Q 018711 242 NTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 321 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~L~ 321 (351)
. .+.+.++|+++|+|++|+||||+++++. ++|+|+++ ++|+++|+++++++|+
T Consensus 198 ~-----------------------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~--~~~i~~n~~a~~~~Ls 250 (275)
T PRK11565 198 D-----------------------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVT--PSRIAENFDVFDFRLD 250 (275)
T ss_pred c-----------------------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCC--HHHHHHHHhccCCCcC
Confidence 0 1578899999999999999999999974 47999998 9999999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 018711 322 EDDVNSIQEVTKKGK 336 (351)
Q Consensus 322 ~e~~~~L~~~~~~~~ 336 (351)
++++++|+++....+
T Consensus 251 ~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 251 KDELGEIAKLDQGKR 265 (275)
T ss_pred HHHHHHHHhhcccCC
Confidence 999999999986544
No 14
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=9.4e-50 Score=359.17 Aligned_cols=259 Identities=17% Similarity=0.275 Sum_probs=211.7
Q ss_pred ccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcchHHHHHHHHHhh
Q 018711 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGPAEDLYGIFINR 82 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~sE~~lG~al~~ 82 (351)
.+..||||||+. +..+..+++..|++ .|. +|||||..||+ |+-+|+||++
T Consensus 14 ~mP~iGlGTw~~------~~~~~~~aV~~Al~----------~GY-------------RHIDtA~~Y~N-E~evG~aik~ 63 (300)
T KOG1577|consen 14 KMPIIGLGTWQS------PPGQVAEAVKAAIK----------AGY-------------RHIDTAHVYGN-EKEVGEAIKE 63 (300)
T ss_pred ccceeeeEeccc------ChhhHHHHHHHHHH----------hCc-------------ceeechhhhCC-hHHHHHHHHH
Confidence 356799999983 23445555555444 454 99999999998 6667999996
Q ss_pred cccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCC---------------CccHHHH
Q 018711 83 VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDA 147 (351)
Q Consensus 83 ~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~---------------~~~~~e~ 147 (351)
.-.+.. ..+..+|++||.|+. .+.++.++.++++||++||+||+|+|++|||-.. ..++.++
T Consensus 64 ~i~~~~-v~RediFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~t 140 (300)
T KOG1577|consen 64 LLAEGG-VKREDIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIET 140 (300)
T ss_pred HhhhCC-cchhhheeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHH
Confidence 532222 333478889999987 4699999999999999999999999999999653 1236789
Q ss_pred HHHHHHHHHcCcccEEEeccccHHHHHHHHHc-CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCcc
Q 018711 148 LNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEK 226 (351)
Q Consensus 148 ~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~ 226 (351)
|++||+++++|++|+||||||+..++++++.. .++|.++|+++|| .....+++++|+++||-|.|||||+++-- +
T Consensus 141 W~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP--~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~-~- 216 (300)
T KOG1577|consen 141 WKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHP--YLQQKKLVEFCKSKGIVVTAYSPLGSPGR-G- 216 (300)
T ss_pred HHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccC--CcChHHHHHHHhhCCcEEEEecCCCCCCC-c-
Confidence 99999999999999999999999999999986 5899999999999 45567899999999999999999998621 0
Q ss_pred ccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcH
Q 018711 227 FLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLA 306 (351)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~ 306 (351)
.+. +.+ +.+.++|+++|.|++|++|||.++++.+ +||-+ +++
T Consensus 217 ----------------~~l----------------l~~--~~l~~iA~K~~kt~aQIlLrw~~q~g~~--vipKS--~~~ 258 (300)
T KOG1577|consen 217 ----------------SDL----------------LED--PVLKEIAKKYNKTPAQILLRWALQRGVS--VIPKS--SNP 258 (300)
T ss_pred ----------------ccc----------------ccC--HHHHHHHHHhCCCHHHHHHHHHHhCCcE--EEecc--CCH
Confidence 010 111 7899999999999999999999998743 45555 459
Q ss_pred hHHHHhhccccCCCCHHHHHHHHHHHhhCC
Q 018711 307 EHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 336 (351)
Q Consensus 307 ~~l~enl~a~~~~L~~e~~~~L~~~~~~~~ 336 (351)
++++||++.+++.||++|++.|+......+
T Consensus 259 ~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 259 ERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred HHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 999999999999999999999998877665
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=9.8e-49 Score=338.12 Aligned_cols=266 Identities=23% Similarity=0.318 Sum_probs=232.4
Q ss_pred ccccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcch--HHHHHHHHH
Q 018711 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGP--AEDLYGIFI 80 (351)
Q Consensus 3 ~vs~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~--sE~~lG~al 80 (351)
++|+|.+|+|++.+|+..+ .+....|+.|++ .|| |+||.|+.||. .|+++|.+|
T Consensus 12 e~Sriv~G~wRl~d~~~~~-~e~~~~Ie~~le----------~Gi-------------tt~DhADIYGgy~cE~~fg~aL 67 (298)
T COG4989 12 EFSRIVLGYWRLNDWNMSA-RELLSFIETALE----------LGI-------------TTFDHADIYGGYQCEALFGEAL 67 (298)
T ss_pred cHHHHHHHHHhhhhccCCH-HHHHHHHHHHHH----------cCc-------------ccchhhhhcCCccHHHHHHHHH
Confidence 6899999999999877443 677888888888 888 99999999987 999999999
Q ss_pred hhcccCCCcccceeeeeecccCC----------CCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHH
Q 018711 81 NRVRRERPPEFLDKVRGLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNH 150 (351)
Q Consensus 81 ~~~~~~r~~~~~~~~~~~~k~~~----------~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~a 150 (351)
+-.+.-|+ +.-+.||++- ..+++|.++|..|+++||++|+|||+|+++||+||+-.. -+|+.+|
T Consensus 68 ~l~p~lRe-----kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeA 141 (298)
T COG4989 68 KLAPGLRE-----KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEA 141 (298)
T ss_pred hcChhhhh-----heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHH
Confidence 98776565 4444555431 145899999999999999999999999999999999765 5999999
Q ss_pred HHHHHHcCcccEEEeccccHHHHHHHHHc-CCCeeeeeeeccccCcC-chhhHHHHHHHhCCcEEEecccccccc-Cccc
Q 018711 151 LTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGLL-SEKF 227 (351)
Q Consensus 151 l~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~-~~~~~l~~~~~~gi~via~~pl~~G~L-~g~~ 227 (351)
|..|.+.||||++|||||++.+++-+.+. ..+.++||++.|+++.. ..++.+++|+++.|.+++||||++|-+ +|.
T Consensus 142 f~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~- 220 (298)
T COG4989 142 FTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD- 220 (298)
T ss_pred HHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-
Confidence 99999999999999999999999988774 56799999999999865 357899999999999999999999833 220
Q ss_pred cCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhCCCceeeeeccCCCcH
Q 018711 228 LDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVAVRYILDQPAVAGSMIGVRLGLA 306 (351)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g-~s~~q~aL~~~l~~~~v~~~i~G~~~~~~ 306 (351)
+..++..+++..+|.++| .|.+++|++|++.+|.-..+|+|+.+ +
T Consensus 221 --------------------------------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~--~ 266 (298)
T COG4989 221 --------------------------------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGN--L 266 (298)
T ss_pred --------------------------------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCC--H
Confidence 344566689999999999 79999999999999999999999998 9
Q ss_pred hHHHHhhccccCCCCHHHHHHHHHHHh
Q 018711 307 EHIQDTNAIFMLSLDEDDVNSIQEVTK 333 (351)
Q Consensus 307 ~~l~enl~a~~~~L~~e~~~~L~~~~~ 333 (351)
+++++.++++++.||.++|-+|..+..
T Consensus 267 eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 267 ERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 999999999999999999999998874
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.6e-43 Score=322.04 Aligned_cols=264 Identities=19% Similarity=0.220 Sum_probs=216.8
Q ss_pred ccccccccceeeC-CCCC-cchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCc--chHHHHHHH
Q 018711 3 SVERDVADEWRVG-PYRP-GRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWD--GPAEDLYGI 78 (351)
Q Consensus 3 ~vs~ig~Gt~~~g-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~Y--G~sE~~lG~ 78 (351)
++|.+|||||++- .|++ .+++.+.+.|+.|++ .|+ ||||||..| |.||..||+
T Consensus 12 ~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie----------~Gi-------------NyidTA~~Yh~g~sE~~lgk 68 (391)
T COG1453 12 ELSILGFGCMRLPLKEQGSIDEENANETIDYAIE----------HGI-------------NYIDTAWPYHGGESEEFLGK 68 (391)
T ss_pred ccceeccceeecccccCCCccHHHHHHHHHHHHH----------cCC-------------ceEeecccccCCCchHHHHH
Confidence 5899999999983 2332 355566666666666 666 999999999 999999999
Q ss_pred HHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCc-cH--HHHHHHHHHHH
Q 018711 79 FINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-GY--LDALNHLTDLK 155 (351)
Q Consensus 79 al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~-~~--~e~~~al~~l~ 155 (351)
||.+..|+ +++++||....+. -+++.+++-++++|++||+||+|+|+||......- .+ ...+++++++|
T Consensus 69 aL~~~~Re-------kv~LaTKlp~~~~-~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak 140 (391)
T COG1453 69 ALKDGYRE-------KVKLATKLPSWPV-KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAK 140 (391)
T ss_pred Hhhhcccc-------eEEEEeecCCccc-cCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHH
Confidence 99987755 6777777754332 47889999999999999999999999999865221 01 23799999999
Q ss_pred HcCcccEEEecccc-HHHHHHHHHcCCCeeeeeeeccccCcCch--hhHHHHHHHhCCcEEEeccccccccCccccCCCC
Q 018711 156 EEGKIKTVALTNFD-TERLRIILENGIPVVSNQVQHSVVDMRPQ--QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNL 232 (351)
Q Consensus 156 ~~Gkir~iGvS~~~-~~~l~~~~~~~~~~~~~q~~~n~~~~~~~--~~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~ 232 (351)
++||||++|+|.|+ .+.+.+++. ..+++++|++||.++.... .+.+++|.++|+||+.|+|+.+|-|..+.
T Consensus 141 ~eGkIr~~GFSfHgs~e~~~~iv~-a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v----- 214 (391)
T COG1453 141 AEGKIRNAGFSFHGSTEVFKEIVD-AYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV----- 214 (391)
T ss_pred hcCcEEEeeecCCCCHHHHHHHHh-cCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC-----
Confidence 99999999999985 577888887 4469999999999986643 38999999999999999999999775421
Q ss_pred CCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCceeeeeccCCCcHhHHH
Q 018711 233 SIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQ 310 (351)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g--~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~ 310 (351)
| +++.++++..+ .||+.+|+||+++||.|+++++|+++ ++|++
T Consensus 215 -----------P----------------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~--~~~l~ 259 (391)
T COG1453 215 -----------P----------------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNT--PEQLE 259 (391)
T ss_pred -----------C----------------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCC--HHHHH
Confidence 1 66778887765 57999999999999999999999999 99999
Q ss_pred HhhccccC--C-CCHHHHHHHHHHHhhCCCC
Q 018711 311 DTNAIFML--S-LDEDDVNSIQEVTKKGKDL 338 (351)
Q Consensus 311 enl~a~~~--~-L~~e~~~~L~~~~~~~~~~ 338 (351)
||++..+. | ||++|+.-|.++.+..+..
T Consensus 260 enLk~~~~~~p~lte~e~~il~~v~~~~~~~ 290 (391)
T COG1453 260 ENLKIASELEPSLTEEELQILEKVEEIYRES 290 (391)
T ss_pred HHHHHHhhcCCccCHHHHHHHHHHHHHHHHH
Confidence 99998754 4 9999999988888766653
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4e-41 Score=292.99 Aligned_cols=264 Identities=19% Similarity=0.244 Sum_probs=219.4
Q ss_pred cccccccccceeeCC-CCCcchhhchHHHhHHHHhhcccccccchhhhHHHHHHHHhcCCCeeecCCCcch--HHHHHHH
Q 018711 2 QSVERDVADEWRVGP-YRPGRRRRCHASLRRCRSHHLRHGRSLYVGKTLASFFFWALRDDVSFSFHLWDGP--AEDLYGI 78 (351)
Q Consensus 2 ~~vs~ig~Gt~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~v~~A~~~G~~fDTA~~YG~--sE~~lG~ 78 (351)
.+||+||||...+|. |+..++++.+..|..|+. .|| |+|||+|.||. ||+.+|.
T Consensus 32 l~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k----------~GI-------------NyiDTsp~Ygqs~se~~lg~ 88 (342)
T KOG1576|consen 32 LRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFK----------SGI-------------NYIDTSPYYGQSRSEEGLGL 88 (342)
T ss_pred ceeeeeeecchhhhhhcCCcchhhhHHHHHHHHH----------ccc-------------cceecCcccCcchhHHHHHH
Confidence 479999999999864 666678888888888888 888 99999999987 9999999
Q ss_pred HHhhcccCCCcccceeeeeecccCCC------CCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCC---CccHHHHHH
Q 018711 79 FINRVRRERPPEFLDKVRGLTKWVPP------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALN 149 (351)
Q Consensus 79 al~~~~~~r~~~~~~~~~~~~k~~~~------~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~---~~~~~e~~~ 149 (351)
++++.||+ +.+|.||++.. ..+++++.+++|+++||++|++||+|++++|..+.. +..+.|++.
T Consensus 89 al~~vPR~-------aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp 161 (342)
T KOG1576|consen 89 ALKDVPRE-------AYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLP 161 (342)
T ss_pred HHhhCChh-------heeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHH
Confidence 99999988 44445554321 258999999999999999999999999999998753 344789999
Q ss_pred HHHHHHHcCcccEEEeccccHHHHHHHHHcC-CCeeeee--eeccccCcCchhhHHHHHHHhCCcEEEeccccccccCcc
Q 018711 150 HLTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQ--VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEK 226 (351)
Q Consensus 150 al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~-~~~~~~q--~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~ 226 (351)
+|++||++||||+|||+.+..+.+.++.+.+ -..+++- .+|++.+ ......++..+..|++|++-++++.|+|+..
T Consensus 162 ~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d-~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~ 240 (342)
T KOG1576|consen 162 ALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLND-NTLLRYLKRLKSKGVGVINASALSMGLLTNQ 240 (342)
T ss_pred HHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhcccc-HHHHHHHHHHHhcCceEEehhhHHHHHhhcC
Confidence 9999999999999999999999999999864 2355555 7777754 2235778889999999999999999999853
Q ss_pred ccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcH
Q 018711 227 FLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLA 306 (351)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~ 306 (351)
+.+.++|.. +.+.+...+..++|++.|+....+|++|.++.|+++++++|+++ .
T Consensus 241 -----------gp~~wHPaS-------------~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s--~ 294 (342)
T KOG1576|consen 241 -----------GPPPWHPAS-------------DELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSS--R 294 (342)
T ss_pred -----------CCCCCCCCC-------------HHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCch--H
Confidence 344455533 34445567778999999999999999999999999999999998 9
Q ss_pred hHHHHhhccccCCCCH
Q 018711 307 EHIQDTNAIFMLSLDE 322 (351)
Q Consensus 307 ~~l~enl~a~~~~L~~ 322 (351)
++|+.|+++..-.||.
T Consensus 295 ~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 295 QLLRINLDANFDRLSS 310 (342)
T ss_pred HHHHHHHHhhhccccc
Confidence 9999999976556776
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.82 E-value=5.2e-05 Score=66.42 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHc-CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
+.+.|+.||+++.+|+|..||||.|+..++++++++ .+.|.++|+...--+.-| .++.++|.+++|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 456999999999999999999999999999999986 688999999988766555 489999999999998775
No 19
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.78 E-value=17 Score=32.70 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=81.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCC
Q 018711 102 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 181 (351)
Q Consensus 102 ~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~ 181 (351)
..+..+++.++..+-.+-..+-+++++|=|=.+.++....+++.+++++.++|.++|.+- +=+++.++....++.+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~G- 144 (250)
T PRK00208 67 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEAG- 144 (250)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC-
Confidence 344557899999999999999999999999999988888888999999999999999974 446777788777777655
Q ss_pred CeeeeeeeccccCcC---chhhHHHHHHHh-CCcEEEec
Q 018711 182 PVVSNQVQHSVVDMR---PQQKMAELCQLT-GVKLITYG 216 (351)
Q Consensus 182 ~~~~~q~~~n~~~~~---~~~~~l~~~~~~-gi~via~~ 216 (351)
+++++.-=+++-.. ...++++..++. ++.||+-.
T Consensus 145 -~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIvea 182 (250)
T PRK00208 145 -CAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDA 182 (250)
T ss_pred -CCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeC
Confidence 44443322333111 023556666664 77777643
No 20
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=87.71 E-value=18 Score=32.61 Aligned_cols=111 Identities=11% Similarity=-0.005 Sum_probs=80.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCC
Q 018711 102 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 181 (351)
Q Consensus 102 ~~~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~ 181 (351)
..+..+++.++..+-.+-..+-+++++|=|=.+..+..-.++..+++++.++|+++|.+- +=+++.++....++.+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~G- 144 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDAG- 144 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC-
Confidence 344557899999999999999999999999999988887788999999999999999974 446777788777777755
Q ss_pred CeeeeeeeccccCcC---chhhHHHHHHHh-CCcEEEe
Q 018711 182 PVVSNQVQHSVVDMR---PQQKMAELCQLT-GVKLITY 215 (351)
Q Consensus 182 ~~~~~q~~~n~~~~~---~~~~~l~~~~~~-gi~via~ 215 (351)
+++++.-=+++-.. ...++++..++. ++.||+-
T Consensus 145 -~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 145 -CAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred -CCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 44443322333211 124556666653 6777754
No 21
>PRK07945 hypothetical protein; Provisional
Probab=87.31 E-value=9.3 Score=36.25 Aligned_cols=154 Identities=10% Similarity=-0.017 Sum_probs=82.9
Q ss_pred hhhhHHHHHHHHhcCC-Cee---ecCCCc----chHHHHHHHHHhhcc--cCCCcccceeeeeecccCCCCCCCCHHHHH
Q 018711 45 VGKTLASFFFWALRDD-VSF---SFHLWD----GPAEDLYGIFINRVR--RERPPEFLDKVRGLTKWVPPPVKMTSSIVR 114 (351)
Q Consensus 45 ~G~~~~~~v~~A~~~G-~~f---DTA~~Y----G~sE~~lG~al~~~~--~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~ 114 (351)
....+++++.+|.+.| ..+ |-++.. +.+...+-..+.... +++... ++++.+-.+.-.+ +.+.+..
T Consensus 109 g~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~--I~Il~GiE~d~~~-~g~~~~~- 184 (335)
T PRK07945 109 GGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP--FRILTGIEVDILD-DGSLDQE- 184 (335)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC--ceEEEEeEecccC-CCCcchh-
Confidence 3446899999999999 766 554432 111111222222211 111102 2333333222111 1112222
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc---------------ccH-HHHHHHHH
Q 018711 115 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDT-ERLRIILE 178 (351)
Q Consensus 115 ~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~---------------~~~-~~l~~~~~ 178 (351)
++.|+. .||+ |..+|...... .++..+.|.++.+.|++..+|=-. +.. +.+..+.+
T Consensus 185 ---~~~l~~--~D~v-IgSvH~~~~~~--~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 185 ---PELLDR--LDVV-VASVHSKLRMD--AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred ---HHHHHh--CCEE-EEEeecCCCCC--HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 222333 5777 78899864332 466778888888899988888431 122 33344445
Q ss_pred cCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEE
Q 018711 179 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 213 (351)
Q Consensus 179 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~vi 213 (351)
++..+.+|--.. ...|...+++.|++.|+.++
T Consensus 257 ~g~~lEINt~~~---r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 257 HGTAVEINSRPE---RRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred hCCEEEEeCCCC---CCCChHHHHHHHHHcCCeEE
Confidence 576666664332 23466789999999998753
No 22
>PRK08392 hypothetical protein; Provisional
Probab=85.55 E-value=25 Score=30.93 Aligned_cols=146 Identities=12% Similarity=0.059 Sum_probs=76.4
Q ss_pred hHHHHHHHHhcCC-Cee---ecCCCcc--hHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHH
Q 018711 48 TLASFFFWALRDD-VSF---SFHLWDG--PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 121 (351)
Q Consensus 48 ~~~~~v~~A~~~G-~~f---DTA~~YG--~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL 121 (351)
.+++++..|.+.| +.| |-++..- .-+..+-+. .+.+.. . . +.+..+..+.-. ++. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i-~~l~~~-~-~--i~il~GiE~~~~-----~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEI-RQWGEE-S-E--IVVLAGIEANIT-----PNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHH-HHHhhc-c-C--ceEEEeEEeeec-----CCc-chhHHHHH
Confidence 5788888888888 887 4443221 111111111 111111 1 1 233434333211 111 12233344
Q ss_pred hhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc----c----cHHH----HHHHHHcCCCeeeeeee
Q 018711 122 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN----F----DTER----LRIILENGIPVVSNQVQ 189 (351)
Q Consensus 122 ~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~----~----~~~~----l~~~~~~~~~~~~~q~~ 189 (351)
+. .||+ +..+|.... .+...+-++.+.++.+.|++.-+|=-. + ..+. ++.+.+++..+.+|-.
T Consensus 84 ~~--~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~- 158 (215)
T PRK08392 84 KK--LDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSR- 158 (215)
T ss_pred hh--CCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCC-
Confidence 43 4777 778894322 222567788888888999888777422 1 1123 2333345655655541
Q ss_pred ccccCcCchhhHHHHHHHhCCcEE
Q 018711 190 HSVVDMRPQQKMAELCQLTGVKLI 213 (351)
Q Consensus 190 ~n~~~~~~~~~~l~~~~~~gi~vi 213 (351)
.+.|...+++.|++.|+.++
T Consensus 159 ----~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 159 ----YRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred ----CCCCCHHHHHHHHHcCCEEE
Confidence 23355689999999997654
No 23
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.45 E-value=4.9 Score=36.34 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC-cccEEEeccccHHHHHHHHHcCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
.++.+...+-++. |..+|+++|.+-..-.+... +..++.++.++.+++.+ .++...++.-..+.++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 4566655555544 77899999998876654322 23456788888899988 6777677765677888888766 445
Q ss_pred eeeeccccC--------cCc------hhhHHHHHHHhCCcEEEec
Q 018711 186 NQVQHSVVD--------MRP------QQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 186 ~q~~~n~~~--------~~~------~~~~l~~~~~~gi~via~~ 216 (351)
+++.+...+ +.. -...++++++.|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 555554431 111 2367888999998877654
No 24
>PRK08609 hypothetical protein; Provisional
Probab=83.99 E-value=14 Score=37.68 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=83.3
Q ss_pred hhHHHHHHHHhcCC-CeeecCCCc-------chHHHHHHHH---HhhcccCCCcccceeeeeecccCCCCCCCCHHHHHH
Q 018711 47 KTLASFFFWALRDD-VSFSFHLWD-------GPAEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 115 (351)
Q Consensus 47 ~~~~~~v~~A~~~G-~~fDTA~~Y-------G~sE~~lG~a---l~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~ 115 (351)
..++++++.|.+.| ++|=..+++ |.+...+-.. +++.++.-. . +.++.+..+.- .++....
T Consensus 349 ~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~-~--i~Il~GiEv~i-----~~~g~~d 420 (570)
T PRK08609 349 FSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYP-E--IDILSGIEMDI-----LPDGSLD 420 (570)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcC-C--CeEEEEEEEee-----cCCcchh
Confidence 37899999999999 887555553 2222222222 222111100 1 23444433321 1111122
Q ss_pred HHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc------c-----cHHHHHHH-HHcCCCe
Q 018711 116 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------F-----DTERLRII-LENGIPV 183 (351)
Q Consensus 116 ~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~------~-----~~~~l~~~-~~~~~~~ 183 (351)
-.+..|.. .||+ |.-+|++... + .+++++.+.++.+.|.+.-||=-. . ..+.+.++ .++|..+
T Consensus 421 ~~~~~L~~--~D~v-I~SvH~~~~~-~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~l 495 (570)
T PRK08609 421 YDDEVLAE--LDYV-IAAIHSSFSQ-S-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTAL 495 (570)
T ss_pred hcHHHHHh--hCEE-EEEeecCCCC-C-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEE
Confidence 22234443 5777 8889976432 2 477889999999999988887543 1 12333333 4456544
Q ss_pred eeeeeeccccCcCchhhHHHHHHHhCCcEE
Q 018711 184 VSNQVQHSVVDMRPQQKMAELCQLTGVKLI 213 (351)
Q Consensus 184 ~~~q~~~n~~~~~~~~~~l~~~~~~gi~vi 213 (351)
.+|- +++...+...++..|.+.|+.++
T Consensus 496 EINa---~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 496 ELNA---NPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEcC---CccccCccHHHHHHHHHcCCEEE
Confidence 4443 33333445789999999998643
No 25
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=83.86 E-value=11 Score=34.20 Aligned_cols=68 Identities=4% Similarity=-0.051 Sum_probs=49.5
Q ss_pred HHHHHHHcCcccEEEe--ccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccc
Q 018711 150 HLTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 150 al~~l~~~Gkir~iGv--S~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl 218 (351)
.|.+-.++|+. -+|+ ..-++...+.+...|+.+.++=.++.+++...-..++..|+..|+..+..-|-
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 35555556875 3443 23345555555556889999999999998777678899999999999988764
No 26
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=83.29 E-value=30 Score=30.04 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=95.6
Q ss_pred HHHHHhcCC-CeeecCCCcchHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHH-----------
Q 018711 52 FFFWALRDD-VSFSFHLWDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV----------- 119 (351)
Q Consensus 52 ~v~~A~~~G-~~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~----------- 119 (351)
+|...++.| +..|-.--.|. +-+.|++ ++. ++..+ .+.+.+.+.+++.+
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~----LL~~L~~---~k~----v~g~G--------vEid~~~v~~cv~rGv~Viq~Dld~ 66 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGE----LLAYLKD---EKQ----VDGYG--------VEIDPDNVAACVARGVSVIQGDLDE 66 (193)
T ss_pred HHHHHcCCCCEEEecCCCchH----HHHHHHH---hcC----CeEEE--------EecCHHHHHHHHHcCCCEEECCHHH
Confidence 456677777 99998654443 3345544 221 01111 13455556655554
Q ss_pred HHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHH-cCCCeeeeeeeccccCcCc-
Q 018711 120 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRP- 197 (351)
Q Consensus 120 SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~-~~~~~~~~q~~~n~~~~~~- 197 (351)
.|....-+.+|.+.+..--.. +...-+.|+++..-|+-.-+++.||.-+..+.-+- .|--|..-.++|+..+...
T Consensus 67 gL~~f~d~sFD~VIlsqtLQ~---~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNi 143 (193)
T PF07021_consen 67 GLADFPDQSFDYVILSQTLQA---VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNI 143 (193)
T ss_pred hHhhCCCCCccEEehHhHHHh---HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCc
Confidence 444555555555555432111 23344557777888988889999999887776555 4766888889998865332
Q ss_pred ----hhhHHHHHHHhCCcEEEeccccccc
Q 018711 198 ----QQKMAELCQLTGVKLITYGTVMGGL 222 (351)
Q Consensus 198 ----~~~~l~~~~~~gi~via~~pl~~G~ 222 (351)
-.++-++|++.|+.+.-..++..+.
T Consensus 144 h~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 144 HLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 3689999999999999999988764
No 27
>PRK06740 histidinol-phosphatase; Validated
Probab=82.85 E-value=35 Score=32.28 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=59.7
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCC---CCcc-------------HHHHHHHHHHHHHcCcccEEEecc------cc---
Q 018711 115 ESIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALTN------FD--- 169 (351)
Q Consensus 115 ~~~~~SL~~L~~d~iDl~~lH~p~~---~~~~-------------~~e~~~al~~l~~~Gkir~iGvS~------~~--- 169 (351)
..+++.|+....||+ |..+|..+. ..+. ...-++.+.++.+.|++..||=-. +.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 455567777778888 888997531 1111 122457888888999998888432 11
Q ss_pred ---HHHHH----HHHHcCCCeeeeee-ec--cccCcCchhhHHHHHHHhCCcEEE
Q 018711 170 ---TERLR----IILENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 170 ---~~~l~----~~~~~~~~~~~~q~-~~--n~~~~~~~~~~l~~~~~~gi~via 214 (351)
...++ .+.+++..+.+|-. .+ ..-+.-|...+++.|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 12332 33335666776664 12 211223556899999999987653
No 28
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=79.26 E-value=20 Score=32.42 Aligned_cols=66 Identities=5% Similarity=-0.150 Sum_probs=46.7
Q ss_pred HHHHHcCcccEEEe--ccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccc
Q 018711 152 TDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 152 ~~l~~~Gkir~iGv--S~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl 218 (351)
.+-.++|+. .+|+ +.-++...+.+...|+.+.++=.++.+++...-..++..++..|+..+..-|-
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 334445665 3443 33345555555556889999999999988776678888889999998888764
No 29
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=78.57 E-value=56 Score=30.23 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 186 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~ 186 (351)
.++.+.. ..+-+.|.++|+++|.+-.++.|..... ..+.++.+..+.+...++...+. .+...++.+++.+.+...+
T Consensus 22 ~~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i 98 (287)
T PRK05692 22 FIPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQ-MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAV 98 (287)
T ss_pred CcCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccc-cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEE
Confidence 3555544 4455668999999999986666642111 22335556666554446665555 4888899999876554333
Q ss_pred eeeccccC------cCc------hhhHHHHHHHhCCcEEEecc
Q 018711 187 QVQHSVVD------MRP------QQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 187 q~~~n~~~------~~~------~~~~l~~~~~~gi~via~~p 217 (351)
-+..|..+ +.. -...+++++++|+.+.+.-.
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 34443221 111 13689999999998865433
No 30
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=77.58 E-value=28 Score=31.93 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=48.2
Q ss_pred HHHHHHcCcccEEEe--ccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccc
Q 018711 151 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 151 l~~l~~~Gkir~iGv--S~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl 218 (351)
|.+..++|+.. +|+ ..-++..++.+...|+++.++=.++++++...-..++..++..|+..+..-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 45555567764 443 33345555555556888999999999998776678899999999988887763
No 31
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=75.74 E-value=7.5 Score=38.33 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=50.5
Q ss_pred HHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCee--eeeeec
Q 018711 120 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV--SNQVQH 190 (351)
Q Consensus 120 SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~--~~q~~~ 190 (351)
.-+|+.+.|+|.+ ..+++|++.-.++.+++|+..+||+-..-.+.+.++++.++.|+ +-|...
T Consensus 194 i~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 194 IDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSA 258 (545)
T ss_pred HHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcc
Confidence 3467788999874 22389999999999999999999999988999999999775544 446553
No 32
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=75.40 E-value=63 Score=29.22 Aligned_cols=99 Identities=9% Similarity=0.052 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC-cccEEEeccccHHHHHHHHHcCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
.++.+.. ..+-+.|.++|+++|++-+ |. .. +.-++.++.+.+.+ .++..+....+.+.++.+.+.+++...
T Consensus 16 ~~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~--~~--~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEK-LAIARALDEAGVDEIEVGI---PA--MG--EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEec---CC--CC--HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 3565644 4455559999999999963 22 11 22345566666643 477777777788889888886655433
Q ss_pred eeeeccccC------cCc------hhhHHHHHHHhCCcEE
Q 018711 186 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 213 (351)
Q Consensus 186 ~q~~~n~~~------~~~------~~~~l~~~~~~gi~vi 213 (351)
+-+..|..+ +.. -...+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 333333221 111 1367889999998654
No 33
>PRK05414 urocanate hydratase; Provisional
Probab=75.27 E-value=8 Score=38.31 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=50.9
Q ss_pred HHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCee--eeeeec
Q 018711 119 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV--SNQVQH 190 (351)
Q Consensus 119 ~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~--~~q~~~ 190 (351)
+.-+|+.+.|+|.+ ..+++|+++-.++.+++|+..+||+-..-.+.+.++++.++.|+ +-|...
T Consensus 202 ri~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSa 267 (556)
T PRK05414 202 RIDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSA 267 (556)
T ss_pred HHHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccc
Confidence 33467888999874 22389999999999999999999999988999999998775554 446553
No 34
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=75.14 E-value=54 Score=30.53 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccC-cCchhhHHHHHHHhCCcEEEecccccc
Q 018711 148 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 148 ~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~~gi~via~~pl~~G 221 (351)
++.+.+|++...|. ..|=+-++.+.+..+++.+ .++++|+..+.+- -..-.++..+|+++|+.++..+-+.++
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 55677787776665 3345557888888888754 4788888866542 112358899999999999986554443
No 35
>PRK05588 histidinol-phosphatase; Provisional
Probab=74.94 E-value=64 Score=29.05 Aligned_cols=153 Identities=11% Similarity=0.048 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhcCC-CeeecCCCc------c-----hHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHH
Q 018711 47 KTLASFFFWALRDD-VSFSFHLWD------G-----PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 114 (351)
Q Consensus 47 ~~~~~~v~~A~~~G-~~fDTA~~Y------G-----~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~ 114 (351)
..+++++++|.+.| +.+ .+++. . +-+..+ +.+++.+. ++++.+-... +.++ -.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~-------~~I~~GiE~~-----~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRN-------NKLLLGIELG-----MEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhc-------CCcceEEEec-----ccCC-CH
Confidence 36888999999999 877 55542 1 011111 11122111 1233333331 2222 34
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCCC---------ccHHH----HHHHHHHHHH-cCcccEEEecc----c--------
Q 018711 115 ESIDVSRRRMDVPCLDMLQFHWWDYSN---------PGYLD----ALNHLTDLKE-EGKIKTVALTN----F-------- 168 (351)
Q Consensus 115 ~~~~~SL~~L~~d~iDl~~lH~p~~~~---------~~~~e----~~~al~~l~~-~Gkir~iGvS~----~-------- 168 (351)
..+++.|+....||+ |..+|..+... .+.++ -++.+.++.+ .|++..+|=-. +
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~ 159 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEI 159 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccc
Confidence 556778887788888 88999853211 11233 3467777776 46666555221 0
Q ss_pred ----cHHHH----HHHHHcCCCeeeeeeeccc-cCcCchhhHHHHHHHhCCcEEEe
Q 018711 169 ----DTERL----RIILENGIPVVSNQVQHSV-VDMRPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 169 ----~~~~l----~~~~~~~~~~~~~q~~~n~-~~~~~~~~~l~~~~~~gi~via~ 215 (351)
-...+ +.+.+++..+.+|--.+.. ....+...+++.|++.|+.++..
T Consensus 160 ~~~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~l 215 (255)
T PRK05588 160 YYDEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITL 215 (255)
T ss_pred cHHHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEE
Confidence 01122 3333345555555422211 11123346788888888775443
No 36
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=74.77 E-value=41 Score=32.06 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCC--CCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 184 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~--~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~ 184 (351)
.++.+ -+..+-+.|..+|+++|++-..-.|. |...+.+|+++++.. ...++..++. .+...++.+++.+....
T Consensus 64 ~~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~~~v 138 (347)
T PLN02746 64 IVPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCcCEE
Confidence 34555 45566677999999999997655553 222223455555543 2335555554 48899999998765443
Q ss_pred eeeeeccccC------cCch------hhHHHHHHHhCCcEEEe
Q 018711 185 SNQVQHSVVD------MRPQ------QKMAELCQLTGVKLITY 215 (351)
Q Consensus 185 ~~q~~~n~~~------~~~~------~~~l~~~~~~gi~via~ 215 (351)
.+-+..|..+ ...+ .+++++|+++|+.+.++
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3333333221 2221 36899999999988544
No 37
>PRK07328 histidinol-phosphatase; Provisional
Probab=74.55 E-value=68 Score=29.18 Aligned_cols=99 Identities=13% Similarity=0.237 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCC---C---------ccHHHHH----HHHHHHHHcCcccEEEeccc---------
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYS---N---------PGYLDAL----NHLTDLKEEGKIKTVALTNF--------- 168 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~---~---------~~~~e~~----~al~~l~~~Gkir~iGvS~~--------- 168 (351)
...+++.|+.-..||+ |..+|..+.. . .+.++++ +.+.++.+.|.+..+|=-..
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 4455566777667887 8888986411 0 1122333 35777888899888874432
Q ss_pred --c----HHHHHHHHHcCCCeeeeeee--ccccCcCchhhHHHHHHHhCCcEE
Q 018711 169 --D----TERLRIILENGIPVVSNQVQ--HSVVDMRPQQKMAELCQLTGVKLI 213 (351)
Q Consensus 169 --~----~~~l~~~~~~~~~~~~~q~~--~n~~~~~~~~~~l~~~~~~gi~vi 213 (351)
. .+.++.+.+++..+.+|-.. +..-+.-|...+++.|++.|+.++
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~it 225 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVV 225 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 0 12234444456656555432 221223355689999999998754
No 38
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=74.11 E-value=2 Score=40.70 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=38.0
Q ss_pred cCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcE
Q 018711 157 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 212 (351)
Q Consensus 157 ~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~v 212 (351)
-|+|||+||--++.+.+.++....-.-++.+.+..++-...+..+++.|++.||+-
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip~ 318 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIPD 318 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCcH
Confidence 49999999999999999998864223344444444442233457788888887753
No 39
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=73.64 E-value=54 Score=29.71 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEE-EecCCCCC----ccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCC
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSN----PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 182 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~-lH~p~~~~----~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 182 (351)
.+.+.+.+..++.+ .-|.|+||+=. --+|+... ...+.+...++.+++.-.+ -+.+-+++++.++++++.+.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 46677776666655 57889999963 33343211 1123466677777766333 37889999999999999773
Q ss_pred eeeeeeeccccCcCchhhHHHHHHHhCCcEEEecc
Q 018711 183 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 183 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~p 217 (351)
..+| ..+..... .++++.+++.|..++.+..
T Consensus 98 ~iIN--dis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 DIIN--DVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred CEEE--eCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 2222 22222111 5789999999999998864
No 40
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=72.91 E-value=90 Score=30.84 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecccc---HHHHHHHHHcCCCe
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 183 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~---~~~l~~~~~~~~~~ 183 (351)
.++++.+.+.+++....+ ..++.+-|-.|.......+.+++.|..++++..=..+.+++-. ++.++++.+.+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~--~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEI--PQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhc--CCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 478899999888877765 2456666666432222125688889999988211256776533 67788877754 4
Q ss_pred eeeeeeccccCcCch---------------------------hhHHHHHHHhCCcEEEecccccc
Q 018711 184 VSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 184 ~~~q~~~n~~~~~~~---------------------------~~~l~~~~~~gi~via~~pl~~G 221 (351)
+.+.+.++-++.... .+-++.+.+.|+.+....++-.|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 455555554432111 12355667778887777777655
No 41
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=72.51 E-value=99 Score=30.13 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHH-cCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~-~~~~~~~ 185 (351)
+++++.+...+++-.+ |=+|.+-+|+-- ..+.++.+++.|.+ .|+-+-.-.-+...+. ++
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcGi--------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~----- 199 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCGV--------TRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNN----- 199 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccch--------hHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcC-----
Confidence 6799999999998888 779999999853 44567888888854 5665555554444333 22
Q ss_pred eeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCc
Q 018711 186 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSE 225 (351)
Q Consensus 186 ~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g 225 (351)
.=||+. ..-+.+++.|+++++.+- |+-|+=.|
T Consensus 200 ---~ENPly-e~fD~lLeI~~~yDVtlS----LGDglRPG 231 (431)
T PRK13352 200 ---KENPLY-EHFDYLLEILKEYDVTLS----LGDGLRPG 231 (431)
T ss_pred ---CcCchH-HHHHHHHHHHHHhCeeee----ccCCcCCC
Confidence 234543 233699999999999875 55555444
No 42
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=71.17 E-value=15 Score=34.18 Aligned_cols=141 Identities=18% Similarity=0.239 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhcCCCCccEEEEecCCCC---CccHHHHHHHHHHHHHcCcccEEEeccccHHHH--HHHHHcCCCee
Q 018711 110 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERL--RIILENGIPVV 184 (351)
Q Consensus 110 ~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~---~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l--~~~~~~~~~~~ 184 (351)
.+.++..|.+-+++.|+|.+=++-.-.-.+. .+.....+++|++..+++.-. .++..+ ..+++.+++|
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f- 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF- 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE-
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe-
Confidence 4568899999999999885444333322221 111334788888888876532 233332 2233345433
Q ss_pred eeeeeccccCcCchhhHHHHHHHhCCcEEEe---ccccccccCccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchh
Q 018711 185 SNQVQHSVVDMRPQQKMAELCQLTGVKLITY---GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQ 261 (351)
Q Consensus 185 ~~q~~~n~~~~~~~~~~l~~~~~~gi~via~---~pl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (351)
+|=.+-+. .....+.+.++++|+.+++- +|++.+ .
T Consensus 204 vN~tP~~~---a~~P~l~ela~~~gvpi~GdD~KT~lAAp---------------------------------------l 241 (295)
T PF07994_consen 204 VNGTPSNI---ADDPALVELAEEKGVPIAGDDGKTPLAAP---------------------------------------L 241 (295)
T ss_dssp EE-SSSTT---TTSHHHHHHHHHHTEEEEESSBS-HHHHH---------------------------------------H
T ss_pred EeccCccc---cCCHHHHHHHHHcCCCeecchHhhhhhhH---------------------------------------H
Confidence 22222222 11248899999999988764 333332 2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCC
Q 018711 262 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRL 303 (351)
Q Consensus 262 ~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~ 303 (351)
..+ +-.+.++|.+.|+...+-.++|.+..|.+. .|...
T Consensus 242 vlD-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~~---~g~~~ 279 (295)
T PF07994_consen 242 VLD-LIRLAKLALRRGMGGVQEWLSFFFKSPMVP---PGPPQ 279 (295)
T ss_dssp HHH-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTSTT
T ss_pred HHH-HHHHHHHHHHcCCCChhHHHHHHhcCCCcc---CCCCC
Confidence 233 346789999999988999999999999753 55554
No 43
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=71.14 E-value=10 Score=37.00 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=48.5
Q ss_pred HhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeee
Q 018711 121 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 186 (351)
Q Consensus 121 L~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~ 186 (351)
-.||.+.|+|.. ...++|++.-.++..++|+-.+||+-..-.+.+.+++++++.|+++
T Consensus 204 ~~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 204 DKRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 457788999862 3337999999999999999999999998899999999987766654
No 44
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=70.26 E-value=1.1e+02 Score=29.72 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHH-cCCCee
Q 018711 106 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVV 184 (351)
Q Consensus 106 ~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~-~~~~~~ 184 (351)
.+++++.+.+.+++-.+ |=+|.+-+|+-- ..+.++.+++.|.+ .|+-+-.-.-+...+. ++
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~Gi--------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~~---- 196 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAGV--------LLEYVERLKRSGRI--TGIVSRGGAILAAWMLHHH---- 196 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccch--------hHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHcC----
Confidence 36899999999998888 679999999853 45567888888854 5665555554444433 22
Q ss_pred eeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCc
Q 018711 185 SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSE 225 (351)
Q Consensus 185 ~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g 225 (351)
.=||+. +.-+++++.|+++++.+- |+-|+=.|
T Consensus 197 ----~ENPly-e~fD~lLeI~~~yDVtlS----LGDglRPG 228 (423)
T TIGR00190 197 ----KENPLY-KNFDYILEIAKEYDVTLS----LGDGLRPG 228 (423)
T ss_pred ----CcCchH-HHHHHHHHHHHHhCeeee----ccCCcCCC
Confidence 234443 233689999999999875 55554444
No 45
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=70.14 E-value=86 Score=28.48 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEE-EecCCCCCcc----HHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCC
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 182 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~-lH~p~~~~~~----~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 182 (351)
++.+.+.+..++.+ .-|.|+||+-. --+|+..... .+.+...++.+++.-.+. +.+-+++++.++++++.|.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 56666666666555 46889999953 3345433211 223444566777664443 78889999999999997733
Q ss_pred eeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 183 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 183 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
+ +| ..+..... ..+++.++++|..++.+.
T Consensus 99 i-IN--disg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 I-IN--DVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred E-EE--eCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 2 22 22332211 588999999999999954
No 46
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=70.13 E-value=82 Score=28.71 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHc--CCCeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 186 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~~ 186 (351)
+.+.+.+...+. ..-|.|+||+=.- +.+... .+.+...++.+++.-.+ -+-+-+++++.++++++. |. +.+|
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE-~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~-~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEE-PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGP-PLIN 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhH-HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCC-CEEE
Confidence 344444444443 3578999999643 111121 34456666666654232 478889999999999986 53 3333
Q ss_pred eeeccccCcCchhhHHHHHHHhCCcEEEecc
Q 018711 187 QVQHSVVDMRPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 187 q~~~n~~~~~~~~~~l~~~~~~gi~via~~p 217 (351)
-+ |... .....+++.+++.|+.++++.-
T Consensus 97 sI--s~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 SV--SAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred eC--CCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 22 2211 1134789999999999998653
No 47
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.09 E-value=15 Score=32.13 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-ccHHHHHHHHHcCCCeeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 187 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~q 187 (351)
+++....-++. |-.-|...|.+= +- + .+..+.+++++++..=-.||..+ .+.++++.+++.|.+|.
T Consensus 14 ~~~~a~~ia~a-l~~gGi~~iEit---~~---t---p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--- 80 (201)
T PRK06015 14 DVEHAVPLARA-LAAGGLPAIEIT---LR---T---PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--- 80 (201)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEe---CC---C---ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE---
Confidence 44544444443 344555544442 22 2 23556666676654435688887 58899999999886553
Q ss_pred eeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 188 VQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 188 ~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
.+ +....+++++|+++||.++.
T Consensus 81 --vS---P~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 --VS---PGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred --EC---CCCCHHHHHHHHHcCCCEeC
Confidence 23 33457999999999998883
No 48
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=69.61 E-value=48 Score=30.81 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 157 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~ 157 (351)
..+++.+..++.+-+..-+.|.||+=.=+........+.-...+|.+|+++
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE 136 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH
Confidence 468999999999999999999999955543211111245567777777765
No 49
>PRK06361 hypothetical protein; Provisional
Probab=69.10 E-value=77 Score=27.52 Aligned_cols=184 Identities=10% Similarity=0.023 Sum_probs=94.6
Q ss_pred hHHHHHHHHhcCC-Cee---ecCCCcchHH--HHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHH
Q 018711 48 TLASFFFWALRDD-VSF---SFHLWDGPAE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 121 (351)
Q Consensus 48 ~~~~~v~~A~~~G-~~f---DTA~~YG~sE--~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL 121 (351)
.+++++..|.+.| ..| |..+.++... ..+-+..++.. . ..-+++..+....- ..++.+ ..+.+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~-~---~~~i~v~~GiE~~~----~~~~~~-~~~~~~~ 81 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELE-L---YWDIEVIPGVELTH----VPPKLI-PKLAKKA 81 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHh-h---cCCCEEEEEEEEcc----cCchhh-chHHHHH
Confidence 5778888888888 777 4444332211 00111111111 1 01123444443321 122222 3333555
Q ss_pred hhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-ccHHHHHHHHHcCCCeeeeeeeccccCcCchhh
Q 018711 122 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQK 200 (351)
Q Consensus 122 ~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~ 200 (351)
.+++ .|+..+|......+ .. ...-.++.+.|.+.-+|=-. .....++.+.++++.+.++-. .....+...
T Consensus 82 ~~~~---~~~~svH~~~~~~~-~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~---~~~~~~~~~ 152 (212)
T PRK06361 82 RDLG---AEIVVVHGETIVEP-VE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITAR---KGHSLTNGH 152 (212)
T ss_pred HHCC---CEEEEECCCCcchh-hh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECC---CCcccchHH
Confidence 5554 56668996543222 11 11114577888887776443 234555555555654444321 112334568
Q ss_pred HHHHHHHhCCcEEEeccccccccCccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCH
Q 018711 201 MAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSI 280 (351)
Q Consensus 201 ~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~ 280 (351)
+++.+++.|+.++.-+....- +.+. ..+.+..++.+.|.+.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~~--------------------------------------~d~~-~~~~~~~i~~~~gl~~ 193 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHAP--------------------------------------SDLI-TYEFARKVALGAGLTE 193 (212)
T ss_pred HHHHHHHhCCcEEEECCCCCH--------------------------------------HHHH-HHHHHHHHHcCCCCCH
Confidence 999999999998765543210 1121 2477888888888888
Q ss_pred HHHHHHHH
Q 018711 281 PVVAVRYI 288 (351)
Q Consensus 281 ~q~aL~~~ 288 (351)
.++---+.
T Consensus 194 ~~v~~~~~ 201 (212)
T PRK06361 194 KELEEALE 201 (212)
T ss_pred HHHHHHHH
Confidence 87654443
No 50
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=68.37 E-value=62 Score=29.22 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=45.8
Q ss_pred HHHHHHcCcccEEE--eccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEecc
Q 018711 151 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 151 l~~l~~~Gkir~iG--vS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~p 217 (351)
|.+..++|+. -+| +..-++..++.+...|+++.++=.++++++...-..++..++..|+.++..-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4445556875 344 33446667777777788899999999997655445677777777888887765
No 51
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=68.11 E-value=19 Score=31.54 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-ccHHHHHHHHHcCCCeeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 187 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~q 187 (351)
+++.... +-+.|-.-|...+-+=+ - + +..++.+++++++..=-.+|..+ .+.++++.+++.|.+|.
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~---~---t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL---R---T---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC---C---C---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 4444443 33445556666555432 1 1 34566667776664335689887 58899999999886664
Q ss_pred eeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 188 VQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 188 ~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
.+| ....+++++|+++|+.++.
T Consensus 85 --vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --ECC---CCCHHHHHHHHHcCCcEEC
Confidence 232 3356999999999998874
No 52
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=67.50 E-value=76 Score=28.84 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEE-EEecCCCCC-ccHHH---HHHHHHHHHHc-CcccEEEeccccHHHHHHHHHcCC
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDML-QFHWWDYSN-PGYLD---ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGI 181 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~-~lH~p~~~~-~~~~e---~~~al~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~~ 181 (351)
.+++.+.+..++.+ .-|.|+||+= .--+|+... ...+| +...++.+++. +. -+.+-+++++.++++++.|.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 56777777766665 5689999993 122343221 11223 66666777766 53 37888999999999999874
Q ss_pred CeeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 182 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 182 ~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
++ ++-+ +... ..++++.+++.|..++.+.
T Consensus 97 ~i-INsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DI-INDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CE-EEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 32 2222 2221 3578999999999999964
No 53
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=67.27 E-value=35 Score=32.76 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=62.2
Q ss_pred EEEEecCCCC----------CccHHHHHHHHHHHHHcCcccEEEec-------cccHHHHHHHHH--cCC------Ceee
Q 018711 131 MLQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGI------PVVS 185 (351)
Q Consensus 131 l~~lH~p~~~----------~~~~~e~~~al~~l~~~Gkir~iGvS-------~~~~~~l~~~~~--~~~------~~~~ 185 (351)
.+.||.|+.. .-+++++++++.+..++-. |.|-+- |.+.+.+.++.+ .+. ++-+
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 3679998632 1227899999998865433 233322 567777777766 356 6899
Q ss_pred eeeeccccCcC----c----hhhHHHHHHHhCCcEEEecccccc
Q 018711 186 NQVQHSVVDMR----P----QQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 186 ~q~~~n~~~~~----~----~~~~l~~~~~~gi~via~~pl~~G 221 (351)
+-++||+.... + -..+.+..+++||.+......+..
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcC
Confidence 99999997432 1 136788888999999999887653
No 54
>PRK13753 dihydropteroate synthase; Provisional
Probab=66.96 E-value=68 Score=29.58 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEe-cCCCCC-ccHHH---HHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCC
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSN-PGYLD---ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 182 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH-~p~~~~-~~~~e---~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 182 (351)
++.+.+.+..++.+ .-|.|.||+=--- +|.... +..+| +...++.+++.+. -|.|-++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 56777777777765 4678888886533 354332 11223 4478888888753 488999999999999998854
Q ss_pred eeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccc
Q 018711 183 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 183 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl 218 (351)
+. | ..+-+ ....+++.+.+.+++++.+--.
T Consensus 99 iI-N--DVsg~---~d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 99 YL-N--DIQGF---PDPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred EE-E--eCCCC---CchHHHHHHHHcCCCEEEEecC
Confidence 32 1 12222 2357788899999999988654
No 55
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=66.33 E-value=25 Score=31.35 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCe
Q 018711 104 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 183 (351)
Q Consensus 104 ~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~ 183 (351)
+..+.+.++-.+..+-..+-+++++|-+=.+-++..-.|+.-|++++-|.|+++|-+-. =.++.++-..+++.+.| +
T Consensus 76 TaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee~G--c 152 (262)
T COG2022 76 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEEAG--C 152 (262)
T ss_pred ccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHhcC--c
Confidence 34478899999999999999999999999998888878888999999999999997632 22333444444444433 4
Q ss_pred eeeeeecccc
Q 018711 184 VSNQVQHSVV 193 (351)
Q Consensus 184 ~~~q~~~n~~ 193 (351)
.+++---+|+
T Consensus 153 aavMPl~aPI 162 (262)
T COG2022 153 AAVMPLGAPI 162 (262)
T ss_pred eEeccccccc
Confidence 5555444444
No 56
>PRK09248 putative hydrolase; Validated
Probab=64.07 E-value=1.1e+02 Score=27.37 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=45.5
Q ss_pred CCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-----ccHH-HHHHHHHcCCCeeeeeeecccc------
Q 018711 126 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-----FDTE-RLRIILENGIPVVSNQVQHSVV------ 193 (351)
Q Consensus 126 ~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-----~~~~-~l~~~~~~~~~~~~~q~~~n~~------ 193 (351)
.||+ ++.+|..........+-.+.+.++.+.|.+--+|=-. .... .+..+.+.|. .+|+..+.+
T Consensus 94 ~D~v-i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~---~lEvN~~~l~~~~~g 169 (246)
T PRK09248 94 LDIV-IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV---ALEINNSSFGHSRKG 169 (246)
T ss_pred CCEE-EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCC---EEEEECCCCccCCCC
Confidence 3666 6677875322111233445555555888877665332 1223 3455555554 334433222
Q ss_pred CcCchhhHHHHHHHhCCcEEE
Q 018711 194 DMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 194 ~~~~~~~~l~~~~~~gi~via 214 (351)
...+...++..+.+.|+.++.
T Consensus 170 ~~~~~~~~~~~~~~~g~~~~~ 190 (246)
T PRK09248 170 SEDNCRAIAALCKKAGVWVAL 190 (246)
T ss_pred CcChHHHHHHHHHHcCCeEEE
Confidence 112456899999999987554
No 57
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=63.82 E-value=13 Score=32.60 Aligned_cols=91 Identities=11% Similarity=0.118 Sum_probs=58.3
Q ss_pred HhhcCCCCccEEEEe-cCCCCCc----cHHHHHHHHHHHHH--cCcccEEEeccccHHHHHHHHHcCCCeeeeeeecccc
Q 018711 121 RRRMDVPCLDMLQFH-WWDYSNP----GYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 193 (351)
Q Consensus 121 L~~L~~d~iDl~~lH-~p~~~~~----~~~e~~~al~~l~~--~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~ 193 (351)
+..-|.|+||+=--- +|..... .++.+...++.+++ .+. -+.|-+++++.++++++.+.++..+...+..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS-
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc-
Confidence 344688999984221 2221111 13346666666665 333 4778899999999999987655433333322
Q ss_pred CcCchhhHHHHHHHhCCcEEEeccc
Q 018711 194 DMRPQQKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 194 ~~~~~~~~l~~~~~~gi~via~~pl 218 (351)
..++++.++++|..+|++---
T Consensus 105 ----~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ----DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ----STTHHHHHHHHTSEEEEESES
T ss_pred ----cchhhhhhhcCCCEEEEEecc
Confidence 468999999999999988644
No 58
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=62.75 E-value=18 Score=31.53 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=33.8
Q ss_pred cEEEecc-ccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 161 KTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 161 r~iGvS~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
-.+|..+ .+.++++.+++.|..|.+ + +....+++++|+++|+.++.
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA~Fiv-----S---P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGAQFIV-----S---PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-SEEE-----E---SS--HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCCCEEE-----C---CCCCHHHHHHHHHcCCcccC
Confidence 4589887 589999999998865532 2 33457999999999999884
No 59
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=62.54 E-value=16 Score=36.26 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=44.2
Q ss_pred HhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCC--eeeeeeec
Q 018711 121 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVQH 190 (351)
Q Consensus 121 L~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~--~~~~q~~~ 190 (351)
-+|+.+.|+|.+- + +++|++.-.++.+++|+..+||+-..-.+.++++++.++. +.+-|...
T Consensus 194 ~kR~~~g~ld~~~-------~-~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 194 EKRLEQGYLDEVT-------D-DLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHHHTTSSSEEE-------S-SHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SST
T ss_pred HHHHhCCCeeEEc-------C-CHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCcc
Confidence 4566778999752 2 3899999999999999999999999888999999987754 44556664
No 60
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=61.82 E-value=1.5e+02 Score=28.34 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc-ccEEEeccccHHHHHHHHHcCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
.++.+... .+-+.|.++|+++|.+- .|. .. +.-++.++.+.+.++ .+..+++..+.+.++.+.+.+.+...
T Consensus 19 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~--~~--~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKL-AIARALDEAGVDELEVG---IPA--MG--EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCC--CC--HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 46666544 44555999999999985 332 21 233566666766643 67777777788899998886654433
Q ss_pred eeeeccccC------cCch------hhHHHHHHHhCCcEE
Q 018711 186 NQVQHSVVD------MRPQ------QKMAELCQLTGVKLI 213 (351)
Q Consensus 186 ~q~~~n~~~------~~~~------~~~l~~~~~~gi~vi 213 (351)
+-+..|..+ ...+ .+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 333333321 1111 267899999997654
No 61
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=61.41 E-value=94 Score=30.02 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=69.4
Q ss_pred hhHHHHHHHHhcCC--CeeecCCCcchHHHHHHHHHhhccc---CCCcccceeeeeecccCCC--CCCCCHHHHHHHHHH
Q 018711 47 KTLASFFFWALRDD--VSFSFHLWDGPAEDLYGIFINRVRR---ERPPEFLDKVRGLTKWVPP--PVKMTSSIVRESIDV 119 (351)
Q Consensus 47 ~~~~~~v~~A~~~G--~~fDTA~~YG~sE~~lG~al~~~~~---~r~~~~~~~~~~~~k~~~~--~~~~s~~~i~~~~~~ 119 (351)
.+++.+.+.+.+.| ++++|.-.= +.+.+-++++.... +.....+.-+.+--.+... ...+.++.++.-=.+
T Consensus 77 e~~~~~~~~~~~~GvTt~l~t~~t~--~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p~~~ 154 (380)
T TIGR00221 77 ETLEIMSERLPKSGCTSFLPTLITQ--PDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREPDVE 154 (380)
T ss_pred HHHHHHHHHHHhcCeeEEeeeccCC--CHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCcCHH
Confidence 46778889999999 788986432 22223444443221 1000111112111111111 112444444432222
Q ss_pred HHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCC
Q 018711 120 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 182 (351)
Q Consensus 120 SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 182 (351)
-++.|.-.+-+.+-+=...|+. +...+.++.|+++|.+-++|-|+-+.+++.++.+.|..
T Consensus 155 ~~~~~~~~~~~~i~~vTlAPE~---~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 155 LFKKFLCEAGGVITKVTLAPEE---DQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred HHHHHHHhcCCCEEEEEECCCC---CChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 2222221112333333333433 33567788999999999999999999999999986644
No 62
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=60.84 E-value=76 Score=28.93 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc-ccEEEeccccHHHHHHHHHcCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
.++.+...+-++ .|.++|++.|.+-. |.. . ++.+++.+.+.+.++ .+-.+....+.+.++.+.+.+++...
T Consensus 18 ~~s~~~k~~i~~-~L~~~Gv~~IEvG~---P~~-~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIAK-ALDAFGVDYIELTS---PAA-S---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEEC---CCC-C---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 456665555444 49999999998874 432 2 334455555554444 33455566788899999987765433
Q ss_pred eeeecccc------CcCch------hhHHHHHHHhCCcEEEec
Q 018711 186 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLITYG 216 (351)
Q Consensus 186 ~q~~~n~~------~~~~~------~~~l~~~~~~gi~via~~ 216 (351)
+-+..|.. .+..+ .+.+++++++|+.+....
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33333321 11211 356788999998765543
No 63
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=60.56 E-value=1e+02 Score=27.20 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=59.3
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHH
Q 018711 129 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 206 (351)
Q Consensus 129 iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 206 (351)
.++.++-.|-+.. -++.+.+|++...+. ..+=|.++.+.+..+++.+ .++++|+..+.+-. ..-.++..+|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 5677777775433 245567777777665 3345556778787777754 47888888776421 12358899999
Q ss_pred HhCCcEEEecccccc
Q 018711 207 LTGVKLITYGTVMGG 221 (351)
Q Consensus 207 ~~gi~via~~pl~~G 221 (351)
++|+.++..+.+.++
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999988766554
No 64
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=60.21 E-value=44 Score=29.61 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHc-CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccc
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 222 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~ 222 (351)
++++.++|..|+-+|.+---=.|.+....++.+.+. |. ..|.|+=.....+++...-+.|..++..+.-+.|+
T Consensus 75 ve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL 148 (223)
T COG2102 75 VEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGL 148 (223)
T ss_pred HHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCC
Confidence 678888888888443332111334566677777764 53 22444433334688888888999888888888875
Q ss_pred cCccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHH
Q 018711 223 LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 281 (351)
Q Consensus 223 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~ 281 (351)
-.. |.+.+...+..+.+..+.+++|+.|+
T Consensus 149 ~~~------------------------------~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 149 DES------------------------------WLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ChH------------------------------HhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 210 11111222345788999999998764
No 65
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.15 E-value=32 Score=30.39 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc---ccEEEecc-ccHHHHHHHHHcCCCee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 184 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk---ir~iGvS~-~~~~~l~~~~~~~~~~~ 184 (351)
+.+....-+ +.|-.-|...+-+=+ . . ...++++++++++-. =-.+|..+ .+.++++.+++.|..|.
T Consensus 23 ~~~~a~~~~-~al~~~Gi~~iEit~---~---~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKIS-LAVIKGGIKAIEVTY---T---N---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEEC---C---C---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 444444444 344445655554422 1 2 235566666665421 13588887 58899999999886664
Q ss_pred eeeeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 185 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 185 ~~q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
+ + +....+++++|+++|+.++.
T Consensus 93 v-----s---P~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----S---PSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----C---CCCCHHHHHHHHHcCCCEEC
Confidence 3 3 34457999999999999884
No 66
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=59.09 E-value=1.4e+02 Score=26.91 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=69.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCee
Q 018711 105 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 184 (351)
Q Consensus 105 ~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~ 184 (351)
..+.+.++-.+..+-..+-+++++|=|=.+-.+..-.|+..|++++-+.|+++|-+- +=.++.++-..+++.+.| +.
T Consensus 70 aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~G--ca 146 (247)
T PF05690_consen 70 AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDAG--CA 146 (247)
T ss_dssp TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT---S
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHCC--CC
Confidence 446799999999999999999999999888887766777899999999999999864 333444565566666645 66
Q ss_pred eeeeeccccCcCc---h-hhHHHHHHHhCCcEEEecccc
Q 018711 185 SNQVQHSVVDMRP---Q-QKMAELCQLTGVKLITYGTVM 219 (351)
Q Consensus 185 ~~q~~~n~~~~~~---~-~~~l~~~~~~gi~via~~pl~ 219 (351)
+++.-=+|+--.. + ..+-..+.+.++.||.=.-++
T Consensus 147 avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG 185 (247)
T PF05690_consen 147 AVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIG 185 (247)
T ss_dssp EBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCC
Confidence 6676666653111 1 233444556699999766443
No 67
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=58.33 E-value=1.6e+02 Score=27.58 Aligned_cols=93 Identities=9% Similarity=0.044 Sum_probs=55.0
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc---------ccHHHHHHHHHcCCCeeeeeeeccccC--cCc
Q 018711 129 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILENGIPVVSNQVQHSVVD--MRP 197 (351)
Q Consensus 129 iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~---------~~~~~l~~~~~~~~~~~~~q~~~n~~~--~~~ 197 (351)
|.-+.|=.=||.......+.+-++.+++-|.++.+.+.+ .+.+.++.+.+.+.. ..+-++.|-.. ...
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAE 215 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHH
Confidence 334455555554322355677777788888776555533 344555656555633 34444444211 011
Q ss_pred hhhHHHHHHHhCCcEEEeccccccc
Q 018711 198 QQKMAELCQLTGVKLITYGTVMGGL 222 (351)
Q Consensus 198 ~~~~l~~~~~~gi~via~~pl~~G~ 222 (351)
-...++.+++.|+.+...+++..|.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 2467888889999999999988874
No 68
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.38 E-value=1e+02 Score=29.17 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCccEEEEe---------cCCCCCccHHHHHHHHHHHHHcCcccEEEec---cccHHHH
Q 018711 106 VKMTSSIVRESIDVSRRRMDVPCLDMLQFH---------WWDYSNPGYLDALNHLTDLKEEGKIKTVALT---NFDTERL 173 (351)
Q Consensus 106 ~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH---------~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS---~~~~~~l 173 (351)
+.++.+.+.+-+ +.|.+.|+++|.+-+.- .+. ..+ -.|.++++.+... ..+...+. ..+.+.+
T Consensus 20 ~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~-~~~-~~e~i~~~~~~~~--~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 20 HQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFG-AHT-DEEYIEAAAEVVK--QAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCC-CCC-HHHHHHHHHHhCC--CCEEEEEeccCcccHHHH
Confidence 456777665544 45999999999996321 111 112 2445455443332 34444332 2356788
Q ss_pred HHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEe
Q 018711 174 RIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 174 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 215 (351)
+.+.+.++.. +.+-.+.-+-..-.+.+++++++|+.+...
T Consensus 95 ~~a~~~gvd~--iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDAGVRV--VRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHcCCCE--EEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 8888776543 333333322223467899999999877664
No 69
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=57.13 E-value=1e+02 Score=29.06 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=50.7
Q ss_pred hhcCCCCccEEEEec-CCCCCccHHHHHHHHHHHHHcCccc-EEEeccc---cHHHHHHHHHc--CCCeeeeeeeccccC
Q 018711 122 RRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIK-TVALTNF---DTERLRIILEN--GIPVVSNQVQHSVVD 194 (351)
Q Consensus 122 ~~L~~d~iDl~~lH~-p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~---~~~~l~~~~~~--~~~~~~~q~~~n~~~ 194 (351)
+.+|.|+|||-+.-. |+..+...++.....+...+.=.+- .|..|.. +++.++++++. +-++.++-+..
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~---- 161 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE---- 161 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH----
Confidence 467888888754222 3221211334444444443322222 2554532 78888888873 33343332221
Q ss_pred cCchhhHHHHHHHhCCcEEEeccc
Q 018711 195 MRPQQKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 195 ~~~~~~~l~~~~~~gi~via~~pl 218 (351)
+.-+.+.+.|+++|..+++.+|.
T Consensus 162 -en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 162 -DNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred -HHHHHHHHHHHHhCCeEEEEcHH
Confidence 12357999999999999998864
No 70
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=57.04 E-value=31 Score=30.25 Aligned_cols=67 Identities=12% Similarity=0.260 Sum_probs=43.6
Q ss_pred HhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec-cccHHHHHHHHHcCCCeeeeeeecc
Q 018711 121 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 191 (351)
Q Consensus 121 L~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n 191 (351)
...+|.||+=+.+... .+..-. .+....+.... .+.++.+||. +-+++.+.++.+ ...++++|++-+
T Consensus 17 ~~~~GaD~iGfIf~~~-SpR~V~-~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~-~~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEK-SKRHQT-ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILS-NTSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCC-CcccCC-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHH-hCCCCEEEECCC
Confidence 3459999999874433 232221 34444444433 3568889997 678889988887 446899999764
No 71
>PRK06424 transcription factor; Provisional
Probab=56.64 E-value=25 Score=29.00 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccCCCC
Q 018711 263 QVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 321 (351)
Q Consensus 263 ~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~L~ 321 (351)
....+.++.+-++.|+|..++|-+--.+...|+-.--|-+..+.+.+....++++.+|+
T Consensus 83 ~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~ 141 (144)
T PRK06424 83 EDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLI 141 (144)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCC
Confidence 44557788888888999988886654443333333334443334444444444444443
No 72
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=55.68 E-value=1.3e+02 Score=28.30 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcC
Q 018711 104 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 180 (351)
Q Consensus 104 ~~~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~ 180 (351)
+..+++.++..+-.+-..+-+++++|=|=.+-......++..+++++.++|+++|..-. =+++.++....++.+.+
T Consensus 143 Tag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g 218 (326)
T PRK11840 143 TAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAG 218 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcC
Confidence 34578999999999999999999999988887776667778999999999999999752 35555777766666544
No 73
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=54.37 E-value=1.8e+02 Score=29.27 Aligned_cols=103 Identities=9% Similarity=0.087 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC---------c-ccEEEeccccHHHHHHH
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG---------K-IKTVALTNFDTERLRII 176 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G---------k-ir~iGvS~~~~~~l~~~ 176 (351)
.++.+. +..+-+.|.++|+|+|.+-+ |.. . ++-+++++.+.+.+ + .+-.+++....+.++.+
T Consensus 102 ~fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~-s---~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 102 SLTPPQ-KLEIARQLAKLRVDIMEVGF---PGS-S---EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeC---CCC-C---HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 466664 44556669999999998855 322 1 23344444444332 1 23346666667778877
Q ss_pred HHc----CCCeeeeeeeccccC------cCch------hhHHHHHHHhCCcEEEecc
Q 018711 177 LEN----GIPVVSNQVQHSVVD------MRPQ------QKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 177 ~~~----~~~~~~~q~~~n~~~------~~~~------~~~l~~~~~~gi~via~~p 217 (351)
.+. +.+-..+-+..|.++ ...+ .+.+++++++|+..+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 764 222122222222222 1111 3688899999876555554
No 74
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=54.15 E-value=1.5e+02 Score=27.99 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCccEEE--------EecCCCCCccHHHHHHHHHHHHHcCcccEEEec-cccHHHHHHH
Q 018711 106 VKMTSSIVRESIDVSRRRMDVPCLDMLQ--------FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRII 176 (351)
Q Consensus 106 ~~~s~~~i~~~~~~SL~~L~~d~iDl~~--------lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS-~~~~~~l~~~ 176 (351)
+.++.+.+. .+-+.|...|+|+|.+-+ +..-.+..+ -.+.++++.+..+.-++..+-+. ..+.+.++.+
T Consensus 19 ~~f~~~~~~-~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVR-AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT-DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHH-HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC-hHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 356666554 455558889999999962 111011122 13344444333333333322222 1356778888
Q ss_pred HHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEe
Q 018711 177 LENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 177 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 215 (351)
.+.+++ .+.+-.+.-+-..-.+.++++++.|+.+...
T Consensus 97 ~~~gvd--~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 97 YDAGAR--TVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHCCCC--EEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 776644 3444333322223357889999998876653
No 75
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=54.06 E-value=2.1e+02 Score=27.55 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc-ccEEEeccccHHHHHHHHHcCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
.++.+.. ..+-+.|..+|+++|++- .|.. . ++-++.++.+.+.|+ .+.++.+......++.+.+.+++...
T Consensus 22 ~~s~e~k-~~ia~~L~~~GV~~IE~G---~p~~--~--~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 22 VFTNEEK-LAIARMLDEIGVDQIEAG---FPAV--S--EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCHHHH-HHHHHHHHHhCCCEEEEe---CCCc--C--hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEE
Confidence 4666644 445566999999999985 3322 2 223555566665554 44445554557888888887655433
Q ss_pred eeeeccccC------cCc------hhhHHHHHHHhCCcEEE
Q 018711 186 NQVQHSVVD------MRP------QQKMAELCQLTGVKLIT 214 (351)
Q Consensus 186 ~q~~~n~~~------~~~------~~~~l~~~~~~gi~via 214 (351)
+-+..|..+ ... -.+.+++++++|+.+..
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF 134 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 333333321 111 13578899999987654
No 76
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=54.03 E-value=1.1e+02 Score=27.62 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCC-------CCCccHHHHHHHHHHHHHc-CcccEEEec---cccHHHHHH
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-------YSNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRI 175 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~-------~~~~~~~e~~~al~~l~~~-Gkir~iGvS---~~~~~~l~~ 175 (351)
.++.+... .+-+.|.++|+++|.+-+..... +.. ...++.++.+++. +.++...+. ..+...++.
T Consensus 18 ~~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 18 QFTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred ecCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhccCCEEEEEecCCccCHHHHHH
Confidence 35666544 44455888999999998653211 111 1234445555332 346665554 334677778
Q ss_pred HHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEe
Q 018711 176 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 176 ~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 215 (351)
+.+.++ +.+.+-.+.-+...-.+.+++++++|+.+...
T Consensus 94 a~~~g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 94 AADLGV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHcCC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 777664 34444433322223357888999998766543
No 77
>PRK02399 hypothetical protein; Provisional
Probab=53.47 E-value=31 Score=33.50 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEE--------------EeccccHHHHHHHHHcC
Q 018711 115 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENG 180 (351)
Q Consensus 115 ~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~i--------------GvS~~~~~~l~~~~~~~ 180 (351)
.++....++|.-...|.+-+|--... =.+||+|.++|.+..+ |+-+..++++..+.+.+
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G-------GraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~g 271 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG-------GRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTG 271 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc-------hHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcC
Confidence 44555555555555799999986542 3579999999998765 44444555555555545
Q ss_pred CC
Q 018711 181 IP 182 (351)
Q Consensus 181 ~~ 182 (351)
+|
T Consensus 272 IP 273 (406)
T PRK02399 272 IP 273 (406)
T ss_pred CC
Confidence 44
No 78
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=52.04 E-value=90 Score=27.46 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=50.9
Q ss_pred hhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec-cccHHHHHHHHHcCCCeeeeeeeccccCcCchhh
Q 018711 122 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQK 200 (351)
Q Consensus 122 ~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~ 200 (351)
..+|.||+=+.+.-. ++..-. .+....+...... ++.+||. |.+.+.+.++++ ...++.+|++-.. ..+
T Consensus 19 ~~~gad~iG~If~~~-SpR~Vs-~~~a~~i~~~v~~--~~~VgVf~n~~~~~i~~i~~-~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 19 AKAGADYIGFIFVPK-SPRYVS-PEQAREIASAVPK--VKVVGVFVNESIEEILEIAE-ELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHcCCCEEEEEEcCC-CCCcCC-HHHHHHHHHhCCC--CCEEEEECCCCHHHHHHHHH-hcCCCEEEECCCC-----CHH
Confidence 457888887755542 232221 2333333333332 8899998 567888888887 4468999987662 345
Q ss_pred HHHHHHHhC-CcEEEe
Q 018711 201 MAELCQLTG-VKLITY 215 (351)
Q Consensus 201 ~l~~~~~~g-i~via~ 215 (351)
.++..++.. +.++--
T Consensus 89 ~~~~l~~~~~~~v~ka 104 (208)
T COG0135 89 YIDQLKEELGVPVIKA 104 (208)
T ss_pred HHHHHHhhcCCceEEE
Confidence 566666654 555543
No 79
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=51.68 E-value=1.5e+02 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 159 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk 159 (351)
+++.+.+.+ ++++.- =+++++|..+......+.+-..+..|+++|.
T Consensus 137 ~~~~i~~~~---~~~~~~--g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 137 GVESIVDRV---VKNTKP--GDIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred CHHHHHHHH---HhcCCC--CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 455544443 444443 3799999643322223444555666777775
No 80
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=50.37 E-value=1.2e+02 Score=27.15 Aligned_cols=110 Identities=7% Similarity=-0.096 Sum_probs=61.7
Q ss_pred ccccccceeeCCCCCcchhhchHHHhHHHHhh--ccccc-cc---chhhhHHHHHHHHhcCC-CeeecCCCcch-HHHHH
Q 018711 5 ERDVADEWRVGPYRPGRRRRCHASLRRCRSHH--LRHGR-SL---YVGKTLASFFFWALRDD-VSFSFHLWDGP-AEDLY 76 (351)
Q Consensus 5 s~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~---~~G~~~~~~v~~A~~~G-~~fDTA~~YG~-sE~~l 76 (351)
-++|.||+.+- +++...+.|+.|.+++ .-.|+ .. ..--.+.+.++.|-+-| +.++.+.-.-. +++-.
T Consensus 28 lKfg~Gt~~l~-----~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~ 102 (237)
T TIGR03849 28 VKFGWGTSALI-----DRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEER 102 (237)
T ss_pred EEecCceEeec-----cHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHH
Confidence 36788888762 2345556777666532 22221 00 11125677788999999 88888776633 44444
Q ss_pred HHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHh
Q 018711 77 GIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 122 (351)
Q Consensus 77 G~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~ 122 (351)
-++++..... -+.+..-++.|........+++...+.+++.|+
T Consensus 103 ~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~Le 145 (237)
T TIGR03849 103 CNLIERAKDN---GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLE 145 (237)
T ss_pred HHHHHHHHhC---CCeEeccccccCCcccccCCHHHHHHHHHHHHH
Confidence 5666654433 333333344444322224566777777766665
No 81
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=50.27 E-value=1.3e+02 Score=30.53 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEecC--CCCCccHHHHHHHHHHHHHcCcccEEEe-cc--------ccHHHHHHHHHc
Q 018711 111 SIVRESIDVSRRRMDVPCLDMLQFHWW--DYSNPGYLDALNHLTDLKEEGKIKTVAL-TN--------FDTERLRIILEN 179 (351)
Q Consensus 111 ~~i~~~~~~SL~~L~~d~iDl~~lH~p--~~~~~~~~e~~~al~~l~~~Gkir~iGv-S~--------~~~~~l~~~~~~ 179 (351)
+...+-|+..++..+-.+.+ -|.. ......+.++++-+-+|+++|+||.+.+ .+ +....+.+++..
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 56788889999988887777 2221 1112226778888999999999999843 22 223344444432
Q ss_pred CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 180 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 180 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
+ ..++-.-+.= .--.-++.|...||..+-
T Consensus 437 D--~lVLt~GCgk----~~~~~~~vc~~lGIPpVL 465 (576)
T COG1151 437 D--ILVLTLGCGK----YRFNKADVGDILGIPRVL 465 (576)
T ss_pred c--eEEEecccch----hhhhhhccccccCCCccc
Confidence 2 3333322221 111334778888887653
No 82
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=49.73 E-value=1.4e+02 Score=26.58 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHc-CCCeeeeeee--ccccCcC---chhhHHHHHHHhCCcEEEecccccc
Q 018711 168 FDTERLRIILEN-GIPVVSNQVQ--HSVVDMR---PQQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 168 ~~~~~l~~~~~~-~~~~~~~q~~--~n~~~~~---~~~~~l~~~~~~gi~via~~pl~~G 221 (351)
.++.++..+.+. |+.+.++..- ||-++.. ...++.+|++.-|-.-..+-||..|
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~ 108 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDG 108 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCC
Confidence 356677776663 6555444333 4433211 1257999999999999999999886
No 83
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=48.95 E-value=1.6e+02 Score=28.37 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCe
Q 018711 149 NHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 183 (351)
Q Consensus 149 ~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~ 183 (351)
+.++.|+++|-+-++|-|+-+.+++.++.+.|...
T Consensus 179 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~ 213 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGITF 213 (382)
T ss_pred HHHHHHHHCCcEEEeeCCcCCHHHHHHHHHcCCCE
Confidence 78899999999999999999999999999866443
No 84
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=48.80 E-value=1.3e+02 Score=28.15 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=22.4
Q ss_pred eccCCCcHhHHHHhhccccC-CCCHHHHHHHH
Q 018711 299 IGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQ 329 (351)
Q Consensus 299 ~G~~~~~~~~l~enl~a~~~-~L~~e~~~~L~ 329 (351)
.|..+ +..+...++++.. -.++++++.|-
T Consensus 270 ~gled--~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 270 DGLED--VGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred hhhcC--hhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 57777 8888888888765 49999977664
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=48.13 E-value=1.5e+02 Score=27.07 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCC------CccHHHHHHHHHHHHHcCcccEEEeccc---cHHHHHHHH
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS------NPGYLDALNHLTDLKEEGKIKTVALTNF---DTERLRIIL 177 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~------~~~~~e~~~al~~l~~~Gkir~iGvS~~---~~~~l~~~~ 177 (351)
.++.+.. ..+-+.|.++|+|+|++-+....... .. -.+.++.+....+ +..+..+++.. +.+.+..+.
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFC-DDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCC-CHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 4666644 45556699999999999876543211 01 1455666655543 24555555543 356666666
Q ss_pred HcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEe
Q 018711 178 ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 178 ~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 215 (351)
+.+++. +.+.+..-+...-.+.+++++++|+.+...
T Consensus 93 ~~gv~~--iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 GSVVDM--IRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred cCCcCE--EEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 555443 333333222222357899999999866543
No 86
>PLN02363 phosphoribosylanthranilate isomerase
Probab=47.96 E-value=51 Score=29.98 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec-cccHHHHHHHHHcCCCeeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 187 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~q 187 (351)
+++.++.+. .+|.|||=+.+... .+... ..+....+........++.+||. +-+++.+.++++ ...++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~-SpR~V-s~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~-~~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPK-SKRSI-SLSVAKEISQVAREGGAKPVGVFVDDDANTILRAAD-SSDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCC-CCCcC-CHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 556666555 48999998864332 22222 13444444444433246679987 678888888877 44689999
Q ss_pred eecc
Q 018711 188 VQHS 191 (351)
Q Consensus 188 ~~~n 191 (351)
++-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9754
No 87
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=46.41 E-value=2.5e+02 Score=26.11 Aligned_cols=149 Identities=11% Similarity=0.146 Sum_probs=71.8
Q ss_pred CeeecCCCcchH-----HHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCC--CCccEEE
Q 018711 61 VSFSFHLWDGPA-----EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV--PCLDMLQ 133 (351)
Q Consensus 61 ~~fDTA~~YG~s-----E~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~--d~iDl~~ 133 (351)
+.+|.-.-|+.. -..+-++|+....+.. .+.+++.+.. .+ ..+++..+ .+-++.+.-|+ |+|.++-
T Consensus 106 dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p-~l~vs~Tlp~--~p--~gl~~~g~--~~l~~a~~~Gv~~d~VNiMt 178 (294)
T cd06543 106 THLDFDIEGGALTDTAAIDRRAQALALLQKEYP-DLKISFTLPV--LP--TGLTPDGL--NVLEAAAANGVDLDTVNIMT 178 (294)
T ss_pred CeEEEeccCCccccchhHHHHHHHHHHHHHHCC-CcEEEEecCC--CC--CCCChhHH--HHHHHHHHcCCCcceeeeee
Confidence 778876666541 2455677777654433 3333322221 22 24454432 23333344443 4555544
Q ss_pred EecCCC--CCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeecc--ccCcCchhhHHHHHHHhC
Q 018711 134 FHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS--VVDMRPQQKMAELCQLTG 209 (351)
Q Consensus 134 lH~p~~--~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n--~~~~~~~~~~l~~~~~~g 209 (351)
+-.-.. ....-..+..+.+.++.+=+--+=+ ++..++-..+ ++.|.+=+.... .+....-..+.++|+++|
T Consensus 179 mDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~i--g~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~ 253 (294)
T cd06543 179 MDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAMI--GVTPMIGVNDVGSEVFTLADAQTLVDFAKEKG 253 (294)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHHc--cccccccccCCCCceeeHHHHHHHHHHHHhCC
Confidence 432221 1121245666666666552222212 2333222221 444432222211 111222368999999999
Q ss_pred CcEEEecccccc
Q 018711 210 VKLITYGTVMGG 221 (351)
Q Consensus 210 i~via~~pl~~G 221 (351)
|+.++|-.+.+.
T Consensus 254 l~~~s~Ws~~RD 265 (294)
T cd06543 254 LGRLSMWSLNRD 265 (294)
T ss_pred CCeEeeeeccCC
Confidence 999999888764
No 88
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=46.24 E-value=1.9e+02 Score=27.67 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=60.1
Q ss_pred EEEecCCCC----------CccHHHHHHHHHHHHHcCcccEEEec-------cccHHHHHHHHH--cCCCeeeeeeeccc
Q 018711 132 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGIPVVSNQVQHSV 192 (351)
Q Consensus 132 ~~lH~p~~~----------~~~~~e~~~al~~l~~~Gkir~iGvS-------~~~~~~l~~~~~--~~~~~~~~q~~~n~ 192 (351)
+.||.|+.. ...+++++++.+...+... +.|-+- |.+.+...++.+ .+++..++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 578888522 1226888888888776655 444322 455677776666 36778999999999
Q ss_pred cCcCc--------hhhHHHHHHHhCCcEEEecccccc
Q 018711 193 VDMRP--------QQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 193 ~~~~~--------~~~~l~~~~~~gi~via~~pl~~G 221 (351)
..... -..+.+...++|+.+.....-+..
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~D 331 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDD 331 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccccc
Confidence 85332 135677777788998888776543
No 89
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.13 E-value=1.1e+02 Score=27.25 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHH-HHHHcCcccEEEecc-ccHHHHHHHHHcCCCeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT-DLKEEGKIKTVALTN-FDTERLRIILENGIPVVSN 186 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~-~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~ 186 (351)
+++...+-++ .|-.-|...|.+=+ - ++.-.+.++.|. +..++.-=-.+|+.+ .+.++++.+++.|..|.
T Consensus 25 ~~~~a~~~~~-al~~gGi~~iEiT~---~---tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi-- 95 (222)
T PRK07114 25 DVEVAKKVIK-ACYDGGARVFEFTN---R---GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI-- 95 (222)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC---C---CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE--
Confidence 4454444443 44456655555422 2 222344555543 223332213588887 58999999999886553
Q ss_pred eeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 187 QVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 187 q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
.+ +....+++++|+++|+.++.
T Consensus 96 ---Vs---P~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 96 ---VT---PLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred ---EC---CCCCHHHHHHHHHcCCCEeC
Confidence 22 34457999999999998884
No 90
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=45.38 E-value=1.3e+02 Score=26.05 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecccc--HHHHHHHHHcCCCeeeeee
Q 018711 111 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQV 188 (351)
Q Consensus 111 ~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~~~q~ 188 (351)
+.....+...++..+...-.+++--...........+.+.+..+++.|- .+++.++. ...+..+.. .+|+++-+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~--~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR--LPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh--CCCCEEEE
Confidence 4466778888888877653333333222222224568899999999998 56666653 334444433 35777777
Q ss_pred eccccCcCc--------hhhHHHHHHHhCCcEEEec
Q 018711 189 QHSVVDMRP--------QQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 189 ~~n~~~~~~--------~~~~l~~~~~~gi~via~~ 216 (351)
..+.+.... -..++..|+..|+.+++-.
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 766553211 2468899999999988744
No 91
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=44.68 E-value=50 Score=32.10 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=40.7
Q ss_pred HHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEE--------------EeccccHHHHHHHHHcCC
Q 018711 116 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGI 181 (351)
Q Consensus 116 ~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~i--------------GvS~~~~~~l~~~~~~~~ 181 (351)
++++..++|.-.-.+++-+|--.. -=.+||+|.++|.+..+ |+..-.+++++.+.+.++
T Consensus 199 ~V~~~~~~Le~~G~Ev~VFHAtG~-------GG~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GI 271 (403)
T PF06792_consen 199 CVDAIRERLEEEGYEVLVFHATGT-------GGRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGI 271 (403)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCC-------chHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCC
Confidence 444445555545689999998653 23579999999998765 455555556666655555
Q ss_pred Ceee
Q 018711 182 PVVS 185 (351)
Q Consensus 182 ~~~~ 185 (351)
|-++
T Consensus 272 P~Vv 275 (403)
T PF06792_consen 272 PQVV 275 (403)
T ss_pred CEEE
Confidence 4333
No 92
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=44.46 E-value=2.4e+02 Score=25.47 Aligned_cols=106 Identities=17% Similarity=0.063 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHc--CCCeee
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 185 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~ 185 (351)
.+++.+.+..++.++ -|.|+||+=. .|.. ....++....+..+++.-.+ -|.|-+++++.++++++. |. ..+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~G~-~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-LDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQGK-CVV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-CCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCCCC-cEE
Confidence 466777777777765 5999999965 2332 22133443443333332222 378889999999999986 53 323
Q ss_pred eeeeccccCc-CchhhHHHHHHHhCCcEEEecccccc
Q 018711 186 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 186 ~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~pl~~G 221 (351)
|= .+.... .....+++.+++.|..++.+..-..|
T Consensus 97 Ns--Is~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 97 NS--INLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred Ee--CCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 32 232211 12347889999999999988643333
No 93
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=44.36 E-value=2.1e+02 Score=26.50 Aligned_cols=101 Identities=9% Similarity=0.041 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEe-cCCCCC-ccHHH---HHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCC
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSN-PGYLD---ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 182 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH-~p~~~~-~~~~e---~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 182 (351)
.+.+.+.+..++.+ .-|.|.||+=--- +|.... ...+| +...++.++++-.+ -|.|-++.++.++++++.|..
T Consensus 35 ~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCC
Confidence 45666666666555 4577888875322 244321 11233 66677777765233 478889999999999998754
Q ss_pred eeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 183 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 183 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
+ +|=+ .. +. +.++++.+++.|.+++.+.
T Consensus 113 i-INDI-~g-~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 113 I-INDI-RS-LS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred E-EEEC-CC-CC---CHHHHHHHHHcCCCEEEEc
Confidence 3 2222 12 21 3477888999999999884
No 94
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=43.27 E-value=59 Score=28.55 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec-cccHHHHHHHHHcCCCeeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 187 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~q 187 (351)
+++.++.+. .+|.|++=+.+... .+... ..+....+.... .+.++.+||. +-+++.+.++++ ...++++|
T Consensus 12 ~~eda~~~~-----~~Gad~iGfI~~~~-S~R~V-~~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~-~~~~d~vQ 82 (210)
T PRK01222 12 TPEDAEAAA-----ELGADAIGFVFYPK-SPRYV-SPEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVE-TVPLDLLQ 82 (210)
T ss_pred cHHHHHHHH-----HcCCCEEEEccCCC-CCCcC-CHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 445554443 48999988864332 22222 134444443332 3568899998 568888888887 44689999
Q ss_pred eecc
Q 018711 188 VQHS 191 (351)
Q Consensus 188 ~~~n 191 (351)
++-+
T Consensus 83 LHg~ 86 (210)
T PRK01222 83 LHGD 86 (210)
T ss_pred ECCC
Confidence 9754
No 95
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=42.30 E-value=2.7e+02 Score=25.39 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc------CCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcc
Q 018711 103 PPPVKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 160 (351)
Q Consensus 103 ~~~~~~s~~~i~~~~~~SL~~L------~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gki 160 (351)
.+..+++.++-.+-.+-..+-+ ++++|=|=.+..+....|+..|++++-+.|+++|-+
T Consensus 76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 3444677777766666666655 788888888878877777789999999999999875
No 96
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=42.11 E-value=1.2e+02 Score=28.37 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=60.5
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHH
Q 018711 129 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 206 (351)
Q Consensus 129 iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 206 (351)
.++.++-.|-+ .+-++.+.+|++.-.+. ..|=|.++...+..+++.+ .++++|+..+.+-. ..-.++..+|+
T Consensus 198 ~~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~d~~~~GGit~~~~~~~~A~ 271 (324)
T TIGR01928 198 YQLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELG-NVKVINIKPGRLGGLTEVQKAIETCR 271 (324)
T ss_pred CCCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEeCcchhcCHHHHHHHHHHHH
Confidence 35556665542 23456778887775554 5577778899999988855 47888888775321 12358999999
Q ss_pred HhCCcEEEeccccccc
Q 018711 207 LTGVKLITYGTVMGGL 222 (351)
Q Consensus 207 ~~gi~via~~pl~~G~ 222 (351)
.+|+.++..+.+.+|+
T Consensus 272 ~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 272 EHGAKVWIGGMLETGI 287 (324)
T ss_pred HcCCeEEEcceEcccH
Confidence 9999999766555543
No 97
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=40.77 E-value=1.7e+02 Score=27.14 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccH------HHHHHHHH--
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT------ERLRIILE-- 178 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~------~~l~~~~~-- 178 (351)
..+.+.+.+-...-++.|.-.-+|++..-....-+. .+.+++..++. +|=-.|+++-.+. ..+.++..
T Consensus 126 ~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~E-a~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~eaa~~~ 201 (300)
T COG2040 126 GASQDALYKFHRPRIEALNEAGADLLACETLPNITE-AEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEAAAIL 201 (300)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHH-HHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHHHHHH
Confidence 445666666677777788878899998887543222 34556665555 8888899885421 22333333
Q ss_pred cCCCeeeeeeeccccCcCchhhHHHHH--HHhCCcEEEecc
Q 018711 179 NGIPVVSNQVQHSVVDMRPQQKMAELC--QLTGVKLITYGT 217 (351)
Q Consensus 179 ~~~~~~~~q~~~n~~~~~~~~~~l~~~--~~~gi~via~~p 217 (351)
.+. +-+.-+-+|=.+.+.-..+++.. ...|+++++|--
T Consensus 202 ~~~-~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 202 AGL-PNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred hcC-cchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC
Confidence 143 22233333433333334677777 445888888854
No 98
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=40.73 E-value=1.6e+02 Score=28.81 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=55.9
Q ss_pred EEecCCCCCccHHHHHHHHHHHHHc------CcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcC-chhhHHHHH
Q 018711 133 QFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELC 205 (351)
Q Consensus 133 ~lH~p~~~~~~~~e~~~al~~l~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~l~~~ 205 (351)
++-.|-+... -++.++.|.+|++. ..--..+=|.++.+.+.++++.+ .++++|+..+-+-.- .-.++.++|
T Consensus 267 ~iEqPv~~~d-~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~-a~d~v~iK~~k~GGIt~a~kia~lA 344 (408)
T TIGR01502 267 RIEGPMDVGS-RQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK-AGHMVQIKTPDVGGVNNIARAIMYC 344 (408)
T ss_pred EEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC-CCCEEEeCccccCCHHHHHHHHHHH
Confidence 5555543221 13457777777766 33344466667888999988865 478888887753211 236899999
Q ss_pred HHhCCcEEEeccc
Q 018711 206 QLTGVKLITYGTV 218 (351)
Q Consensus 206 ~~~gi~via~~pl 218 (351)
+.+||.++..+..
T Consensus 345 ~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 345 KANGMGAYVGGTC 357 (408)
T ss_pred HHcCCEEEEeCCC
Confidence 9999999986554
No 99
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=40.56 E-value=2.3e+02 Score=27.10 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc-ccEEEeccccHHHHHHHHHcCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
.++.+... .+-+.|.++|+++|.+-+ |.. + ++-++.++.+.+.++ .+-.+.+..+.+.++.+.+.+.+...
T Consensus 18 ~~s~~~k~-~ia~~L~~~Gv~~IEvG~---p~~--~--~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKV-EIARKLDELGVDVIEAGF---PIA--S--EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEeC---CCC--C--hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 45666544 445559999999999752 321 1 233566666666555 44445566778889998887755433
Q ss_pred eeeeccccCc------Cc------hhhHHHHHHHhCCcEE
Q 018711 186 NQVQHSVVDM------RP------QQKMAELCQLTGVKLI 213 (351)
Q Consensus 186 ~q~~~n~~~~------~~------~~~~l~~~~~~gi~vi 213 (351)
+-+..|..+. .. -.+.+++|+++|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3334433321 11 1367889999998654
No 100
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=40.38 E-value=61 Score=29.26 Aligned_cols=110 Identities=10% Similarity=-0.045 Sum_probs=59.3
Q ss_pred ccccccceeeCCCCCcchhhchHHHhHHHHhhcccccccchhh----------hHHHHHHHHhcCC-CeeecCCCcch-H
Q 018711 5 ERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLYVGK----------TLASFFFWALRDD-VSFSFHLWDGP-A 72 (351)
Q Consensus 5 s~ig~Gt~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~----------~~~~~v~~A~~~G-~~fDTA~~YG~-s 72 (351)
-++|+||+.+- +++...+.|+.|.++ |=.+..|- .+.++++.|-+-| +.++.++-.-. +
T Consensus 41 ~K~g~Gt~~l~-----~~~~l~eki~l~~~~----gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~ 111 (244)
T PF02679_consen 41 LKFGWGTSALY-----PEEILKEKIDLAHSH----GVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLP 111 (244)
T ss_dssp EEE-TTGGGGS-----TCHHHHHHHHHHHCT----T-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---
T ss_pred EEecCceeeec-----CHHHHHHHHHHHHHc----CCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCC
Confidence 36888988762 234455566666553 22222222 4677799999999 99999887644 4
Q ss_pred HHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 018711 73 EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVP 127 (351)
Q Consensus 73 E~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d 127 (351)
++..-++++..... -+.+.+-++.|-.......+++.+.+.+++-|+. |.+
T Consensus 112 ~~~r~~~I~~~~~~---Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeA-GA~ 162 (244)
T PF02679_consen 112 EEERLRLIRKAKEE---GFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEA-GAD 162 (244)
T ss_dssp HHHHHHHHHHHCCT---TSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHH-TEC
T ss_pred HHHHHHHHHHHHHC---CCEEeecccCCCchhcccCCHHHHHHHHHHHHHC-CCC
Confidence 44445667664433 2333334444433222234577788888888875 543
No 101
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=39.89 E-value=2.8e+02 Score=24.87 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCC
Q 018711 113 VRESIDVSRRRMDVPCLDMLQFHWWD 138 (351)
Q Consensus 113 i~~~~~~SL~~L~~d~iDl~~lH~p~ 138 (351)
-...+++.|++.+.||+ |..+|+..
T Consensus 90 ~~~~~~~~l~~~~~D~v-igSvH~~~ 114 (253)
T TIGR01856 90 FEDFTKDFLDEYGLDFV-IGSVHFLG 114 (253)
T ss_pred hHHHHHHHHHHCCCCeE-EEEEEeec
Confidence 33556777888888988 88999864
No 102
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=39.83 E-value=1.4e+02 Score=28.51 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHHhCCcEEEeccccc
Q 018711 147 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMG 220 (351)
Q Consensus 147 ~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~pl~~ 220 (351)
-++.+.+|+++..|. +.|=+-++...+..+++.+ .++++|+....+-. ..-.++..+|+++|+.++..+...+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 456777787776555 5566667888888888755 37777877665321 1235889999999999886543333
No 103
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=39.47 E-value=2.6e+02 Score=26.75 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred EEEEecCCCC----------CccHHHHHHHHHHHHH-cCc---ccEEEec--cccHHHHHHHHH--cCCCeeeeeeeccc
Q 018711 131 MLQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSV 192 (351)
Q Consensus 131 l~~lH~p~~~----------~~~~~e~~~al~~l~~-~Gk---ir~iGvS--~~~~~~l~~~~~--~~~~~~~~q~~~n~ 192 (351)
.+-||.+++. ...++++++++.++.+ .|+ |+++=+. |.+.+.+.++.+ .+.++.++-++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3679988632 1126888988887654 442 2333233 344566666654 25667788899998
Q ss_pred cCc----Cch----hhHHHHHHHhCCcEEEecccccc
Q 018711 193 VDM----RPQ----QKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 193 ~~~----~~~----~~~l~~~~~~gi~via~~pl~~G 221 (351)
... .+. ..+.++.+++|+.+......+..
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDD 334 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 642 121 24566777889999998877653
No 104
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=39.28 E-value=3.4e+02 Score=25.74 Aligned_cols=108 Identities=6% Similarity=-0.012 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCC---ccEEEEecCCCCCccHHHHHHHHHHHHH-----cCcccEEEecccc-----H--
Q 018711 106 VKMTSSIVRESIDVSRRRMDVPC---LDMLQFHWWDYSNPGYLDALNHLTDLKE-----EGKIKTVALTNFD-----T-- 170 (351)
Q Consensus 106 ~~~s~~~i~~~~~~SL~~L~~d~---iDl~~lH~p~~~~~~~~e~~~al~~l~~-----~Gkir~iGvS~~~-----~-- 170 (351)
.+.+.+.+...+.+.++.....+ |-+-++=+.....+ .++..+.++.+.+ .+.|-.||+++.. +
T Consensus 102 ~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~~-~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~ 180 (345)
T cd01321 102 REYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNFN-DSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLD 180 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCC-HHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCHHH
Confidence 35788888888887777765545 55545555555443 3444444444433 3457788887633 2
Q ss_pred --HHHHHHHHcC--CCeeeeeeeccc-----c-C------cC-----------chhhHHHHHHHhCCcEEE
Q 018711 171 --ERLRIILENG--IPVVSNQVQHSV-----V-D------MR-----------PQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 171 --~~l~~~~~~~--~~~~~~q~~~n~-----~-~------~~-----------~~~~~l~~~~~~gi~via 214 (351)
..+..+.+.+ .++.+.-.+... . + .. ....+++++++++|.+-.
T Consensus 181 f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG~~~~~dp~ll~~l~~~~I~lEv 251 (345)
T cd01321 181 FLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHGFALPKHPLLMDLVKKKNIAIEV 251 (345)
T ss_pred HHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccccccCcCHHHHHHHHHcCCeEEE
Confidence 2344454456 777777766541 0 0 00 124789999999988875
No 105
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=38.76 E-value=3.4e+02 Score=25.55 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
.++.+...+-++. |+.+ ++.++..|-+. +-++.+.++++.-.+. ..|=|.++++.+.++++.+ .+++
T Consensus 199 ~~~~~~a~~~~~~-l~~~-----~i~~iEqP~~~-----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~ 266 (357)
T cd03316 199 RWDLAEAIRLARA-LEEY-----DLFWFEEPVPP-----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDI 266 (357)
T ss_pred CCCHHHHHHHHHH-hCcc-----CCCeEcCCCCc-----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCE
Confidence 3566554433322 3333 45566666442 2456677787775555 3344557889999998855 4788
Q ss_pred eeeeccccCc-CchhhHHHHHHHhCCcEEEec
Q 018711 186 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 186 ~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~ 216 (351)
+|+.....-. ..-.++...|+++|+.++..+
T Consensus 267 v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 267 IQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred EecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 8888765421 123689999999999987654
No 106
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=38.60 E-value=2.6e+02 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccc
Q 018711 278 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 316 (351)
Q Consensus 278 ~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~ 316 (351)
.|-.++||+|++.++.-..++.|+.-.=.+|.-.|+..+
T Consensus 72 ~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 72 TTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 566788999988886656777777654467777777654
No 107
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=38.46 E-value=1.2e+02 Score=29.56 Aligned_cols=76 Identities=5% Similarity=0.002 Sum_probs=41.2
Q ss_pred HHHHHHhcCC-CeeecCCCcchHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCc
Q 018711 51 SFFFWALRDD-VSFSFHLWDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCL 129 (351)
Q Consensus 51 ~~v~~A~~~G-~~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~L~~d~i 129 (351)
.++++|++.| +++|||...-. +..+....++. .+.+...++-.| +.+--......++-.+ .+++|
T Consensus 83 ~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~A----------git~v~~~G~dP-Gi~nv~a~~a~~~~~~--~i~si 148 (389)
T COG1748 83 TILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKA----------GITAVLGCGFDP-GITNVLAAYAAKELFD--EIESI 148 (389)
T ss_pred HHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHc----------CeEEEcccCcCc-chHHHHHHHHHHHhhc--cccEE
Confidence 6789999999 99999886533 21122222211 111122221111 1332333333333333 57999
Q ss_pred cEEEEecCCCC
Q 018711 130 DMLQFHWWDYS 140 (351)
Q Consensus 130 Dl~~lH~p~~~ 140 (351)
|+|..+-|++.
T Consensus 149 ~iy~g~~g~~~ 159 (389)
T COG1748 149 DIYVGGLGEHG 159 (389)
T ss_pred EEEEecCCCCC
Confidence 99999999876
No 108
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.18 E-value=95 Score=30.24 Aligned_cols=130 Identities=11% Similarity=0.125 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCcccEEEeccccHHHHHHHHH----cCCCeeeeeeeccccCcCchhhHHHHHHHh--CCcEEEecccc
Q 018711 146 DALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQQKMAELCQLT--GVKLITYGTVM 219 (351)
Q Consensus 146 e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~----~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~--gi~via~~pl~ 219 (351)
.+++++.+..++++ ++...+++.+...++ .|+.|.++-.-.| .+.++.+++. =++++++.
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~~~~~~~~~~~R~~giVSRG--- 187 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------RETLERLKKSGRIMGIVSRG--- 187 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhcCCccCeecCC---
Confidence 37888888866655 667788888777775 2555554444333 5778888763 46666653
Q ss_pred ccccCccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCH-----------------HH
Q 018711 220 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSI-----------------PV 282 (351)
Q Consensus 220 ~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~-----------------~q 282 (351)
+.++.+ ++.....+..+.+..+.+-+++++|.+|+ +|
T Consensus 188 Gs~~~~--------------------------WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQ 241 (431)
T PRK13352 188 GSFLAA--------------------------WMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQ 241 (431)
T ss_pred HHHHHH--------------------------HHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHH
Confidence 223221 11122233445555688899999987643 33
Q ss_pred HHHHHHH-------hCCCceeeeeccCCCcHhHHHHhhcc
Q 018711 283 VAVRYIL-------DQPAVAGSMIGVRLGLAEHIQDTNAI 315 (351)
Q Consensus 283 ~aL~~~l-------~~~~v~~~i~G~~~~~~~~l~enl~a 315 (351)
++=-.++ ...+|.+.|=|+--+-..|++.|++.
T Consensus 242 i~El~~lgeL~~RA~e~gVQvMVEGPGHvPl~~I~~nv~l 281 (431)
T PRK13352 242 IQELITLGELVKRAREAGVQVMVEGPGHVPLDQIEANVKL 281 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence 3221111 11346666655554447777777763
No 109
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.99 E-value=1.1e+02 Score=26.90 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-ccHHHHHHHHHcCCCeeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 187 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~q 187 (351)
+++...+-++. |..-|.+.|-+= +.. .+..+.+++++++.-=..||..+ .+.++++.+.+.|..|.+
T Consensus 25 ~~~~a~~i~~a-l~~~Gi~~iEit---l~~------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv-- 92 (212)
T PRK05718 25 KLEDAVPLAKA-LVAGGLPVLEVT---LRT------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV-- 92 (212)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEEe---cCC------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE--
Confidence 55555544444 444555545443 222 23555666666553335688876 477899999988866543
Q ss_pred eeccccCcCchhhHHHHHHHhCCcEE
Q 018711 188 VQHSVVDMRPQQKMAELCQLTGVKLI 213 (351)
Q Consensus 188 ~~~n~~~~~~~~~~l~~~~~~gi~vi 213 (351)
+ +....++++.|+++++.++
T Consensus 93 ---s---P~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 93 ---S---PGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred ---C---CCCCHHHHHHHHHcCCCEe
Confidence 2 2234599999999999888
No 110
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=37.76 E-value=2.3e+02 Score=28.53 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeec
Q 018711 111 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 190 (351)
Q Consensus 111 ~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~ 190 (351)
+.+.+..++.+ .-|.|.||+=.--. .+..+.+...++.+++...+ -+.|-+++++.++++++.|.++ +|-+
T Consensus 165 ~~i~~~A~~~~-~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~aGAdi-INsV-- 235 (499)
T TIGR00284 165 DGIEGLAARME-RDGADMVALGTGSF----DDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKAGASG-VIMP-- 235 (499)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHcCCCE-EEEC--
Confidence 44555544443 56889999853221 22234567777777776333 4888999999999999877432 2321
Q ss_pred cccCcCchhhHHHHHHHhCCcEEEec
Q 018711 191 SVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 191 n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
+- .....+++.+++.|..++.+-
T Consensus 236 s~---~~~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DV---ENAVELASEKKLPEDAFVVVP 258 (499)
T ss_pred Cc---cchhHHHHHHHHcCCeEEEEc
Confidence 22 122367788888888888764
No 111
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.69 E-value=3.7e+02 Score=25.62 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=61.7
Q ss_pred CCccEEEEecCCCC----------CccHHHHHHHHHH-HHHcCc---ccEEEec--cccHHHHHHHHH--cCCCeeeeee
Q 018711 127 PCLDMLQFHWWDYS----------NPGYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQV 188 (351)
Q Consensus 127 d~iDl~~lH~p~~~----------~~~~~e~~~al~~-l~~~Gk---ir~iGvS--~~~~~~l~~~~~--~~~~~~~~q~ 188 (351)
+....+-||.+++. ...++++++++.+ +.+.|+ +++.=|. |.+.+.++++.+ .+.++.++-+
T Consensus 211 ~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLI 290 (345)
T PRK14457 211 QFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLI 290 (345)
T ss_pred ceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEe
Confidence 44578899998632 1226788888866 455563 4444444 445667666665 2556778889
Q ss_pred eccccCcC----ch----hhHHHHHHHhCCcEEEecccccc
Q 018711 189 QHSVVDMR----PQ----QKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 189 ~~n~~~~~----~~----~~~l~~~~~~gi~via~~pl~~G 221 (351)
+||++... +. ..+.+..+++|+.+......+..
T Consensus 291 Pynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~d 331 (345)
T PRK14457 291 PYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLD 331 (345)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCc
Confidence 99987421 22 24667778889999988776653
No 112
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=37.68 E-value=1.1e+02 Score=27.94 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=49.8
Q ss_pred HHHHHhhcCCCCccEEEEecCC----------CCCccHHHHHH-HHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeee
Q 018711 117 IDVSRRRMDVPCLDMLQFHWWD----------YSNPGYLDALN-HLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 117 ~~~SL~~L~~d~iDl~~lH~p~----------~~~~~~~e~~~-al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
+++.=+-+.++-||.+++---| +..+.+.++++ ..+.+++.|| .+|+...+++...++++.|+.+.+
T Consensus 158 ~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~ 235 (267)
T PRK10128 158 LDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVA 235 (267)
T ss_pred HHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEE
Confidence 3333344456889998886432 22232333332 2333677888 468777788888999888988988
Q ss_pred eeeeccccC
Q 018711 186 NQVQHSVVD 194 (351)
Q Consensus 186 ~q~~~n~~~ 194 (351)
+.....++.
T Consensus 236 ~g~D~~~l~ 244 (267)
T PRK10128 236 VGVDTMLYT 244 (267)
T ss_pred EChHHHHHH
Confidence 888888764
No 113
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.65 E-value=3.5e+02 Score=25.81 Aligned_cols=91 Identities=9% Similarity=0.071 Sum_probs=60.5
Q ss_pred EEEEecCCCC----------CccHHHHHHHHHHHHHcC--ccc--EEEec--cccHHHHHHHHH--cCCCeeeeeeeccc
Q 018711 131 MLQFHWWDYS----------NPGYLDALNHLTDLKEEG--KIK--TVALT--NFDTERLRIILE--NGIPVVSNQVQHSV 192 (351)
Q Consensus 131 l~~lH~p~~~----------~~~~~e~~~al~~l~~~G--kir--~iGvS--~~~~~~l~~~~~--~~~~~~~~q~~~n~ 192 (351)
.+-||.|+.. ..+++++++++.++.++. +|. |+=+. |.+.+.+.++.+ .+.+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5789987522 123789999999865543 221 22222 567777777766 36778899999998
Q ss_pred cCcC----c-h---hhHHHHHHHhCCcEEEecccccc
Q 018711 193 VDMR----P-Q---QKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 193 ~~~~----~-~---~~~l~~~~~~gi~via~~pl~~G 221 (351)
.... + . +.+.+..+++|+.+......+..
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~d 326 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGED 326 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 5431 1 1 35677788899999998877653
No 114
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=37.17 E-value=1.2e+02 Score=26.37 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=53.0
Q ss_pred CCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeecc-ccCcCchhhHHHHH
Q 018711 127 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELC 205 (351)
Q Consensus 127 d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~l~~~ 205 (351)
.-..+..+.++.. .+. ..+|++.|-. .+-+.-.+.+.+.++++ |+...++-+..+ .........+++.|
T Consensus 21 ~~~~V~~l~R~~~-----~~~---~~~l~~~g~~-vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDPS-----SDR---AQQLQALGAE-VVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSSH-----HHH---HHHHHHTTTE-EEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEeccc-----hhh---hhhhhcccce-EeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhh
Confidence 4466777777641 222 4556677774 45566667888888887 655444444433 21122346899999
Q ss_pred HHhCCcEEEecccccc
Q 018711 206 QLTGVKLITYGTVMGG 221 (351)
Q Consensus 206 ~~~gi~via~~pl~~G 221 (351)
++.||..+.++-++..
T Consensus 91 ~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 91 KAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHT-SEEEESEESSG
T ss_pred hccccceEEEEEeccc
Confidence 9999999999888664
No 115
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.08 E-value=2.3e+02 Score=26.99 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHc-Cc---ccEEEec--cccHHHHHHHHH--cCCCeeeeeeeccccCcC-----ch---hhHHHHHHH
Q 018711 144 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMR-----PQ---QKMAELCQL 207 (351)
Q Consensus 144 ~~e~~~al~~l~~~-Gk---ir~iGvS--~~~~~~l~~~~~--~~~~~~~~q~~~n~~~~~-----~~---~~~l~~~~~ 207 (351)
++++.+++.++.++ |+ +-++=+. |.+.+.+.++.+ .+.++.++-++||+.... +. ..+.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 78888888877554 32 1122122 567777777776 367788999999997532 11 357777888
Q ss_pred hCCcEEEecccccc
Q 018711 208 TGVKLITYGTVMGG 221 (351)
Q Consensus 208 ~gi~via~~pl~~G 221 (351)
+|+.+......+..
T Consensus 305 ~gi~~tiR~~~G~d 318 (344)
T PRK14464 305 RGVLTKVRNSAGQD 318 (344)
T ss_pred CCceEEEECCCCCc
Confidence 99999999887753
No 116
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=36.79 E-value=61 Score=26.25 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 157 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~ 157 (351)
+..+.+.|+.+...-+|+++++..|.-.....++...++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 45666666667777899999998887665567777777777776
No 117
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=36.70 E-value=4.5e+02 Score=26.29 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHH----cCcccEEEec--cccHHHHHHHHHcC
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 180 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~----~Gkir~iGvS--~~~~~~l~~~~~~~ 180 (351)
.++.+.|.+.++. +...|...+-|. -.-++....++-+.+.++.+++ .|.++.++|+ ..+.+++.++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~Lv--sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALV--AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEE--eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 3678899999876 467886666553 2223223236667777777775 5777777765 46789999998877
Q ss_pred CC-eeeeeeecccc-----Cc-----Cch--hhHHHHHHHhCCcEEEeccc
Q 018711 181 IP-VVSNQVQHSVV-----DM-----RPQ--QKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 181 ~~-~~~~q~~~n~~-----~~-----~~~--~~~l~~~~~~gi~via~~pl 218 (351)
+. +.+.|=-||.- ++ ..+ ...++.+++.|+.-++.+.|
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 54 55566555531 11 111 35788888889875555443
No 118
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=36.15 E-value=58 Score=21.06 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccC
Q 018711 269 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 318 (351)
Q Consensus 269 l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~ 318 (351)
|+++|+..|+|++-+ ..+|+.+.- +...+ .+++.+.++.+.+
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~~~----vs~~t--r~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGPPR----VSEET--RERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTCSS----STHHH--HHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCCCC----CCHHH--HHHHHHHHHHHCC
Confidence 678999999998854 455555532 44555 7777777665544
No 119
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.04 E-value=4.6e+02 Score=26.25 Aligned_cols=104 Identities=8% Similarity=-0.016 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC-cccEEEecc----c--cHHHHHHHHHcC
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTN----F--DTERLRIILENG 180 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G-kir~iGvS~----~--~~~~l~~~~~~~ 180 (351)
.+++.+.+.++...++.|+.+ +.+...++... ...+.+.++++++.| .-..|++++ . +.+.+..+.+.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 477888888888888777543 44554444333 355667778888887 434455542 1 345555555555
Q ss_pred CCeeeeeeeccc--------cCcC----chhhHHHHHHHhCCcEEEecc
Q 018711 181 IPVVSNQVQHSV--------VDMR----PQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 181 ~~~~~~q~~~n~--------~~~~----~~~~~l~~~~~~gi~via~~p 217 (351)
.. .+++-.-- ++.. ...+.++.++++||.+.+.--
T Consensus 298 ~~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I 344 (497)
T TIGR02026 298 LV--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFI 344 (497)
T ss_pred Cc--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEE
Confidence 32 22222111 1111 124678999999998765433
No 120
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=35.76 E-value=51 Score=25.29 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=38.8
Q ss_pred ccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHHhCCcEEEecccccc
Q 018711 166 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 166 S~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~pl~~G 221 (351)
+.++...+.++++.+ .++++|+.....-. ..-.++.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 456788888888855 47888888665311 1236899999999999999886 554
No 121
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.57 E-value=3.4e+02 Score=26.17 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=57.3
Q ss_pred EEEEecCCCCCccHHHHHHHHHHHHHc------CcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHH
Q 018711 131 MLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAE 203 (351)
Q Consensus 131 l~~lH~p~~~~~~~~e~~~al~~l~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~ 203 (351)
++++-.|-+... .++-++.|.+|++. +.--..|=+.++.+.+..+++.+ .++++|+..+-.-. ..-.++.+
T Consensus 229 ~~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~-a~div~~kl~k~GGIt~a~kia~ 306 (369)
T cd03314 229 PLRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG-AAHMVQIKTPDLGGIDNTIDAVL 306 (369)
T ss_pred cEEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC-CCCEEEecchhcCCHHHHHHHHH
Confidence 346666644221 12346777777766 44445566778889999998855 47888888875321 12368999
Q ss_pred HHHHhCCcEEEecc
Q 018711 204 LCQLTGVKLITYGT 217 (351)
Q Consensus 204 ~~~~~gi~via~~p 217 (351)
+|+.+|+.++....
T Consensus 307 lA~a~Gi~~~~h~~ 320 (369)
T cd03314 307 YCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHcCCcEEEeCC
Confidence 99999999998643
No 122
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.19 E-value=3.2e+02 Score=26.63 Aligned_cols=124 Identities=16% Similarity=0.064 Sum_probs=73.0
Q ss_pred hcccccccchhhhHHHH-HHHHhcCC-CeeecCCCcchHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHH
Q 018711 36 HLRHGRSLYVGKTLASF-FFWALRDD-VSFSFHLWDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 113 (351)
Q Consensus 36 ~~~~~~~~~~G~~~~~~-v~~A~~~G-~~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i 113 (351)
.+-++.+.++|...... +...++.| ..+=+.+.||...+++-..+++...+ ..++ .+. +.+.+
T Consensus 77 g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~-------~~~~----d~~----~~~~~ 141 (396)
T COG0626 77 GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE-------VTFV----DPG----DDEAL 141 (396)
T ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeE-------EEEE----CCC----ChHHH
Confidence 34456667889955544 88888889 88877889999888888888764432 1111 111 22223
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-ccHHHHHHHHHcCCCe
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPV 183 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~ 183 (351)
.+.+.. +..+++++-.|......+.++-.--+..++.| + .+-|-| |....+.+-++.|..+
T Consensus 142 ~~~~~~-------~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g-~-~vvVDNTfatP~~q~PL~~GaDI 203 (396)
T COG0626 142 EAAIKE-------PNTKLVFLETPSNPLLEVPDIPAIARLAKAYG-A-LVVVDNTFATPVLQRPLELGADI 203 (396)
T ss_pred HHHhcc-------cCceEEEEeCCCCcccccccHHHHHHHHHhcC-C-EEEEECCcccccccChhhcCCCE
Confidence 332221 67899999999764433344444444456666 3 333443 5555555555544333
No 123
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=33.50 E-value=1.5e+02 Score=28.18 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=59.7
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHH
Q 018711 129 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 206 (351)
Q Consensus 129 iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 206 (351)
+++.++-.|-+. +-++.|.+|++...+. ..|=|-++...+..+++.+ .++++|+....+-. ..-.++.+.|+
T Consensus 189 ~~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~-a~di~~~d~~~~GGit~~~~ia~~A~ 262 (361)
T cd03322 189 YRLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER-LIDYIRTTVSHAGGITPARKIADLAS 262 (361)
T ss_pred cCCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 466677766532 2366778888887665 6677778899999998855 48888888775321 12358999999
Q ss_pred HhCCcEEEecc
Q 018711 207 LTGVKLITYGT 217 (351)
Q Consensus 207 ~~gi~via~~p 217 (351)
++|+.++..+.
T Consensus 263 ~~gi~~~~h~~ 273 (361)
T cd03322 263 LYGVRTGWHGP 273 (361)
T ss_pred HcCCeeeccCC
Confidence 99999987543
No 124
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=33.36 E-value=59 Score=22.51 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 018711 268 TLKRIASKHGVSIPVVAVRYIL 289 (351)
Q Consensus 268 ~l~~~a~~~g~s~~q~aL~~~l 289 (351)
.+.++|+.+|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999985
No 125
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=33.28 E-value=3.6e+02 Score=24.21 Aligned_cols=102 Identities=9% Similarity=0.054 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeee
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSN 186 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~ 186 (351)
++.+...+-++ .|+.+ ++.++..|-+.. -++.+.++++.-.+. ..|=+-++...+.++++.+ .++++
T Consensus 140 ~~~~~a~~~~~-~l~~~-----~i~~iEeP~~~~-----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v 207 (265)
T cd03315 140 WTPKQAIRALR-ALEDL-----GLDYVEQPLPAD-----DLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAV 207 (265)
T ss_pred cCHHHHHHHHH-HHHhc-----CCCEEECCCCcc-----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEE
Confidence 56554444332 33433 455566664322 245667777776555 3444557888888888754 48888
Q ss_pred eeeccccCc-CchhhHHHHHHHhCCcEEEecccccc
Q 018711 187 QVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 187 q~~~n~~~~-~~~~~~l~~~~~~gi~via~~pl~~G 221 (351)
|+..+..-. ..-.++..+|+++|+.++..+.+.++
T Consensus 208 ~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 208 NIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred EEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 888776432 22368999999999999987655544
No 126
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=33.11 E-value=2.4e+02 Score=27.40 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHHhCCcEEEeccc
Q 018711 148 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 148 ~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~pl 218 (351)
++.|.+|++...+. ..|-|-++..++..+++.+ .++++|......-. ..-.++..+|+.+|+.++..+..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56677787776555 5566667888888888865 48888888765321 12368999999999999987754
No 127
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=33.10 E-value=4.2e+02 Score=24.88 Aligned_cols=93 Identities=9% Similarity=0.015 Sum_probs=50.7
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc----ccH-----HHHHHHHHcCCCeeeeeeeccccC--cCc
Q 018711 129 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN----FDT-----ERLRIILENGIPVVSNQVQHSVVD--MRP 197 (351)
Q Consensus 129 iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~----~~~-----~~l~~~~~~~~~~~~~q~~~n~~~--~~~ 197 (351)
|.-+.+=.=+|....-..+.+.++.+..-..++.+|+.+ ..+ +.++.+.+.+. ..++++.+|=.. ...
T Consensus 143 i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~-~~~~~~h~dh~~Ei~d~ 221 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRL-QTVLVVHINHANEIDAE 221 (321)
T ss_pred CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCC-cEEEEeeCCChHhCcHH
Confidence 344445544554221122445556666667777777764 322 33333333342 223344555211 111
Q ss_pred hhhHHHHHHHhCCcEEEeccccccc
Q 018711 198 QQKMAELCQLTGVKLITYGTVMGGL 222 (351)
Q Consensus 198 ~~~~l~~~~~~gi~via~~pl~~G~ 222 (351)
-.+.++.+++.|+.+...+++..|+
T Consensus 222 ~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 222 VADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHHHcCCEEEecceeeCCC
Confidence 2467888899999999999998874
No 128
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.62 E-value=2e+02 Score=28.23 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=45.4
Q ss_pred HHHHHcCcccEEEeccccHHHHHHHHHc-------CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEecc
Q 018711 152 TDLKEEGKIKTVALTNFDTERLRIILEN-------GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 152 ~~l~~~Gkir~iGvS~~~~~~l~~~~~~-------~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~p 217 (351)
..+-+.|-+.++|..+.+++++++.++. +-+|-+|-+ +++-+...+...++.+.++|+.++..+.
T Consensus 32 aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 32 VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 3356789999999999999888777751 224555543 4443333356789999999999887653
No 129
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=32.54 E-value=38 Score=22.08 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHH
Q 018711 267 QTLKRIASKHGVSIPVVAVRY 287 (351)
Q Consensus 267 ~~l~~~a~~~g~s~~q~aL~~ 287 (351)
+.+++..++.|+|..++|-..
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 455666667777777776544
No 130
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.45 E-value=2.9e+02 Score=26.59 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=59.6
Q ss_pred EEEEecCCCC-----------CccHHHHHHHHHH-HHHcC---cccEEEec--cccHHHHHHHHHc--CCCeeeeeeecc
Q 018711 131 MLQFHWWDYS-----------NPGYLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILEN--GIPVVSNQVQHS 191 (351)
Q Consensus 131 l~~lH~p~~~-----------~~~~~e~~~al~~-l~~~G---kir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n 191 (351)
.+.||.+++. ..+++++++++.+ +.+.| +|+++=+. |.+.+.+.++.+. +..+.++-++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 4678886421 2237889998875 55556 34444444 3455556666552 455778889999
Q ss_pred ccCcCc--------hhhHHHHHHHhCCcEEEecccccc
Q 018711 192 VVDMRP--------QQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 192 ~~~~~~--------~~~~l~~~~~~gi~via~~pl~~G 221 (351)
++...+ -..+.+..+++|+.+......+.-
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTT 354 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcc
Confidence 975322 246788888999999998877653
No 131
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.33 E-value=1.7e+02 Score=26.75 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCC-------CCccHHHHHHHHHHHHHcCcccEEEe-------cc----cc
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-------SNPGYLDALNHLTDLKEEGKIKTVAL-------TN----FD 169 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~-------~~~~~~e~~~al~~l~~~Gkir~iGv-------S~----~~ 169 (351)
++.+...+ +-..|.++|.++|++-. |.. ...+-.+.++.+.++..+-++..+.- +. ..
T Consensus 18 ~~~~~~~~-ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDMLP-IAEALDEAGFFSLEVWG---GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ccHHHHHH-HHHHHHHcCCCEEEccC---CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHH
Confidence 45554444 47888899999998873 220 01111344444444333333333322 11 13
Q ss_pred HHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 170 TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 170 ~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
...++.+.+.++.. +.+-+.+-+-..-.+.+++++++|+.+..
T Consensus 94 ~~di~~~~~~g~~~--iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 94 ELFVEKAAKNGIDI--FRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHcCCCE--EEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 44555555555443 33333322222235788899999977654
No 132
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=32.25 E-value=4.6e+02 Score=25.41 Aligned_cols=87 Identities=14% Similarity=0.081 Sum_probs=55.2
Q ss_pred cEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcC-chhhHHHHHHHh
Q 018711 130 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 208 (351)
Q Consensus 130 Dl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~l~~~~~~ 208 (351)
|-+.+..|. +...+..++.+.+.+.++.+-+...+.+.++++++...+..++..+-||.-.- .-..+.+.|+++
T Consensus 100 D~Vvv~~p~-----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~ 174 (405)
T PRK08776 100 DTLVVPHDA-----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV 174 (405)
T ss_pred CEEEEccCC-----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 555554443 34455555555555556666676667788887775444566666677764322 235789999999
Q ss_pred CCcEEEecccccc
Q 018711 209 GVKLITYGTVMGG 221 (351)
Q Consensus 209 gi~via~~pl~~G 221 (351)
|+-++.=...+.+
T Consensus 175 gi~vIvD~a~a~~ 187 (405)
T PRK08776 175 GALTVVDNTFLSP 187 (405)
T ss_pred CCEEEEECCCccc
Confidence 9888866655544
No 133
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=31.76 E-value=3.7e+02 Score=26.10 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHHhCCcEEEecc
Q 018711 147 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 147 ~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~p 217 (351)
-++.+.+|++.-.|. ..|=|-++...+..+++.+ .++++|+...-.-. ..-.++..+|+.+|+.++....
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~ 316 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGP 316 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccC
Confidence 367778888876665 5667778899999998865 48888887775321 1235899999999999997654
No 134
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=31.71 E-value=2e+02 Score=27.48 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHHhCCcEEEecccccc
Q 018711 147 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 147 ~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~pl~~G 221 (351)
-++.+.+|++..-+. ..|=|-++...+..+++.+ .++++|+.....-. ..-.++...|+.+|+.++..+.+.++
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 356667777776555 6677778888888888754 47788887765321 12357899999999999876544444
No 135
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.39 E-value=2.5e+02 Score=26.53 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHHhCCcEEEec
Q 018711 147 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 147 ~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~ 216 (351)
-++.+.+|+++..|. +.|=+.++...+..+++.+ .++++|+..+..-. ..-.++..+|+.+|+.++...
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 466777888887666 5566677889999998855 48888888765321 224689999999999987653
No 136
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.14 E-value=3.8e+02 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=11.9
Q ss_pred hHHHHHHHhCCcEEEec
Q 018711 200 KMAELCQLTGVKLITYG 216 (351)
Q Consensus 200 ~~l~~~~~~gi~via~~ 216 (351)
.+.++|+++||.+|-..
T Consensus 138 ~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 138 ELLKAAEKHGIDPIFLV 154 (265)
T ss_pred HHHHHHHHcCCcEEEEe
Confidence 57777777777777543
No 137
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=30.87 E-value=3.2e+02 Score=22.94 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=35.1
Q ss_pred ccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcC---------chhhHHHHHHHhCCcEEEec
Q 018711 160 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR---------PQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 160 ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~---------~~~~~l~~~~~~gi~via~~ 216 (351)
=+.+|+|.|+.+++.++.+.+..+.+ ++++-.. .-..+-++++...+.+++.+
T Consensus 95 ~~~ig~S~h~~~e~~~a~~~g~dYv~----~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 95 DKIIGASCHSLEEAREAEELGADYVF----LGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALG 156 (180)
T ss_dssp TSEEEEEESSHHHHHHHHHCTTSEEE----EETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEES
T ss_pred ceEEEeecCcHHHHHHhhhcCCCEEE----ECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEc
Confidence 34799999999999998875644433 3333111 12456677777888888765
No 138
>PRK00077 eno enolase; Provisional
Probab=30.77 E-value=5.2e+02 Score=25.32 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC--cccEEEec--cccHHHHHHHHHcCCCe
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALT--NFDTERLRIILENGIPV 183 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G--kir~iGvS--~~~~~~l~~~~~~~~~~ 183 (351)
++++.+...+.+.++. .+++++-.|-+.. -++.+.+|.++- +|.-.|=- ..++..+..+++.+ .+
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~-----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~-a~ 329 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN-----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKG-AA 329 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc-----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhC-CC
Confidence 5777777777777665 4577888876433 355566666663 45443322 24688999998855 47
Q ss_pred eeeeeeccccCc-CchhhHHHHHHHhCCcEEE
Q 018711 184 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 184 ~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via 214 (351)
+++|+..+-+-. ..-.++..+|+.+|+.++.
T Consensus 330 d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 330 NSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 788888775421 1236889999999998775
No 139
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=30.77 E-value=3e+02 Score=25.38 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC----cccEEEeccccHHHHHHHHHc--CC
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILEN--GI 181 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G----kir~iGvS~~~~~~l~~~~~~--~~ 181 (351)
++.+ -+-.+-+.|..+|+|+|.+-+ |. .. ++-.+.++.+.+.| .++..+++......++.+++. +.
T Consensus 20 ~s~~-~Ki~ia~~L~~~Gv~~IE~gf---P~--~~--~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 20 MSVE-QKLRFFKLLVKIGFKEIEVGF---PS--AS--QTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeC---CC--CC--HHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCC
Confidence 4444 345566679999999999873 32 22 22234455554554 367778777666668888875 43
Q ss_pred Ceeeeeeec--ccc------CcCch------hhHHHHHHHhCCc
Q 018711 182 PVVSNQVQH--SVV------DMRPQ------QKMAELCQLTGVK 211 (351)
Q Consensus 182 ~~~~~q~~~--n~~------~~~~~------~~~l~~~~~~gi~ 211 (351)
....+.+.+ |.. ++..+ .+.+++++++|+.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Confidence 322222222 222 12221 3678899999875
No 140
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=30.61 E-value=2.2e+02 Score=22.55 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcC-CCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEe
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 215 (351)
.+.+++.+....+.|+|+. ...+..++++++ ..+.++--..+|. .-...+...|.++||.++-.
T Consensus 12 ~~k~l~~l~~a~~~~ki~~------G~~e~~Kai~~g~a~LVviA~Dv~P~--~~~~~l~~lc~~~~vpyv~V 76 (116)
T COG1358 12 EQKALSLLGKASRAGKLKK------GTNEVTKAIERGKAKLVVIAEDVSPE--ELVKHLPALCEEKNVPYVYV 76 (116)
T ss_pred HHHHHHHHHHHHhcCCchh------hHHHHHHHHHcCCCcEEEEecCCCHH--HHHHHHHHHHHhcCCCEEEe
Confidence 4678888999999998763 677888888875 5577777767652 23357888999999998854
No 141
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.58 E-value=1.1e+02 Score=25.81 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHc
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 179 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 179 (351)
..++.++|+.|++.|. +-.-+||.+...+...++.
T Consensus 94 ~~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 94 HPDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHH
Confidence 4567888999999984 4455777777777776663
No 142
>TIGR00035 asp_race aspartate racemase.
Probab=30.56 E-value=3.2e+02 Score=24.07 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCC-----------ccHHHHHHHHHHHHHcCcccEEEeccccHHH-HHH
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----------PGYLDALNHLTDLKEEGKIKTVALTNFDTER-LRI 175 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~-----------~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~-l~~ 175 (351)
-+.+.+++=++.+-.+.+.++++++.+++|+..+ .....+.+.++.|.+.| +.+|-++..+... +++
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~ 92 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAED 92 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHH
Confidence 3566777777788788999999999999986321 11345677777777765 7899988766554 344
Q ss_pred HHH
Q 018711 176 ILE 178 (351)
Q Consensus 176 ~~~ 178 (351)
+.+
T Consensus 93 l~~ 95 (229)
T TIGR00035 93 IQK 95 (229)
T ss_pred HHH
Confidence 433
No 143
>PRK14017 galactonate dehydratase; Provisional
Probab=30.29 E-value=3.6e+02 Score=25.86 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHHhCCcEEEecc
Q 018711 148 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 148 ~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~~p 217 (351)
++.+.+|++...+. ..|=|.++...+..+++.+ .++++|+..+.+-. ..-.++.++|+++|+.++..+.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 56788888877665 5566778889999998865 47888888775421 2346899999999999987654
No 144
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.92 E-value=3.5e+02 Score=26.15 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=60.3
Q ss_pred EEEEecCCCC----------CccHHHHHHHHHHHH-HcCc---ccEEEec--cccHHHHHHHHH--cCC---Ceeeeeee
Q 018711 131 MLQFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGI---PVVSNQVQ 189 (351)
Q Consensus 131 l~~lH~p~~~----------~~~~~e~~~al~~l~-~~Gk---ir~iGvS--~~~~~~l~~~~~--~~~---~~~~~q~~ 189 (351)
.+-||.+++. ..+++++++++.++. +.|+ |.|+=+. |.+.+.+.++.+ .+. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 4678988632 123788999988776 4454 3444444 345555555544 144 57899999
Q ss_pred ccccCcC----c----hhhHHHHHHHhCCcEEEecccccc
Q 018711 190 HSVVDMR----P----QQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 190 ~n~~~~~----~----~~~~l~~~~~~gi~via~~pl~~G 221 (351)
||++... + -..+.+..+++|+.+......+..
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 9997431 1 136788889999999998887653
No 145
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.83 E-value=3.9e+02 Score=25.26 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccc
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSV 192 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~ 192 (351)
.....+-++.| +..++.++-.|-+... ++.|.+|+++.-+. +.|=|.++...+..+++.+ .++++|+....
T Consensus 189 ~~~A~~~~~~l--~~~~i~~iEeP~~~~d-----~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~ 260 (352)
T cd03325 189 KPMAKDLAKEL--EPYRLLFIEEPVLPEN-----VEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISH 260 (352)
T ss_pred HHHHHHHHHhc--cccCCcEEECCCCccC-----HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccc
Q ss_pred cC-cCchhhHHHHHHHhCCcEEEec
Q 018711 193 VD-MRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 193 ~~-~~~~~~~l~~~~~~gi~via~~ 216 (351)
+- -..-.++.++|+++|+.++..+
T Consensus 261 ~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 261 AGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred cCCHHHHHHHHHHHHHcCCcEeccC
No 146
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=29.77 E-value=3e+02 Score=22.70 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=39.0
Q ss_pred EEeccccH--HHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEecccccccc
Q 018711 163 VALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 223 (351)
Q Consensus 163 iGvS~~~~--~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L 223 (351)
+|...|+. ..+..++.. .-|+++..... +.+ ++++..|.++++.+|+.|.+.++.+
T Consensus 20 ~GlDgHd~gakvia~~l~d-~GfeVi~~g~~---~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 20 LGLDGHDRGAKVIARALAD-AGFEVINLGLF---QTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred cCccccccchHHHHHHHHh-CCceEEecCCc---CCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 47777764 566777663 23554444333 455 6899999999999999999988753
No 147
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=29.74 E-value=1.1e+02 Score=29.84 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc---ccEEEeccccHHHHHHHHHcCCCe
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTNFDTERLRIILENGIPV 183 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk---ir~iGvS~~~~~~l~~~~~~~~~~ 183 (351)
.++.+ =+-.+-..|.+||.|+|.+-+--.+ .. ..+..+++.. ..|. ++..+........++.++..+.+.
T Consensus 20 ~~s~e-~Ki~Ia~~Ld~lGv~~IE~g~p~~s---~~-~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~ 92 (409)
T COG0119 20 SFSVE-EKIRIAKALDDLGVDYIEAGFPVAS---PG-DFEFVRAIAE--KAGLFICALIAALARAIKRDIEALLEAGVDR 92 (409)
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEEEeCCcCC---hh-hHHHHHHHHH--hcCcccchhhhhhHHhHHhhHHHHHhCCCCE
Confidence 34555 3556778899999999887543222 11 2334444433 3332 233333333344666776655443
Q ss_pred eeeeeeccccCc------Cch------hhHHHHHHHhCCcEEE
Q 018711 184 VSNQVQHSVVDM------RPQ------QKMAELCQLTGVKLIT 214 (351)
Q Consensus 184 ~~~q~~~n~~~~------~~~------~~~l~~~~~~gi~via 214 (351)
..+-+.-|.++. ..+ .+.+++++++|+.+..
T Consensus 93 i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~ 135 (409)
T COG0119 93 IHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF 135 (409)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 323233332221 111 3689999999976664
No 148
>PRK15108 biotin synthase; Provisional
Probab=29.71 E-value=4.9e+02 Score=24.67 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc--ccHHHHHHHHHcCCCeee
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPVVS 185 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~--~~~~~l~~~~~~~~~~~~ 185 (351)
.+++.|.+.... ...+|...+- ....+.++....++.+.+.++.+++.|. .+.+|+ .+.+.+.++.+.|..-..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888888875 4568888772 2333223322235677778888887774 344554 678888888876643211
Q ss_pred eeee-----ccccCc--Cc--hhhHHHHHHHhCCcEEEeccccc
Q 018711 186 NQVQ-----HSVVDM--RP--QQKMAELCQLTGVKLITYGTVMG 220 (351)
Q Consensus 186 ~q~~-----~n~~~~--~~--~~~~l~~~~~~gi~via~~pl~~ 220 (351)
+-++ |.-++. .. -.+.++.+++.|+.+-+-..++-
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl 195 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL 195 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC
Confidence 1111 111111 11 13678888888986654444443
No 149
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=29.59 E-value=2.9e+02 Score=22.60 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhhcC--CCCccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 018711 108 MTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 157 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~--~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~ 157 (351)
..+..|++.+.++++.+. ....|++++...... ..+.++...|..+.++
T Consensus 60 V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 60 HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 567788888888877664 357899999998876 5578887777777665
No 150
>PRK13796 GTPase YqeH; Provisional
Probab=29.55 E-value=5.1e+02 Score=24.77 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=71.3
Q ss_pred hHHHHHHHHhcCC----CeeecCCCcchHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHhh
Q 018711 48 TLASFFFWALRDD----VSFSFHLWDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 123 (351)
Q Consensus 48 ~~~~~v~~A~~~G----~~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~~ 123 (351)
++.+++...-+.- -.+|..+.-+.-...+.+... ++. .+.+.+|..-.+.....+.+..-++...+.
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-----viLViNK~DLl~~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-----VLLVGNKADLLPKSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-----EEEEEEchhhCCCccCHHHHHHHHHHHHHh
Confidence 4555555554322 446876655442223333332 222 244577765332234556676666766777
Q ss_pred cCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHH
Q 018711 124 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 177 (351)
Q Consensus 124 L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~ 177 (351)
+|....|++++-.-.. .. +.++++.+.++.+.+.+-.+|.+|-.-..+.-.+
T Consensus 129 ~g~~~~~v~~vSAk~g-~g-I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 129 LGLRPVDVVLISAQKG-HG-IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred cCCCcCcEEEEECCCC-CC-HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 7765567777755432 22 7889999988888889999999998766554333
No 151
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.49 E-value=91 Score=32.83 Aligned_cols=53 Identities=8% Similarity=-0.052 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHH
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 171 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~ 171 (351)
++....-+++.++-|++|+| ..+......-..|..|.+=+..|.+|+.+.-+|
T Consensus 530 dYgE~eWKk~a~~cLe~l~~------------f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPW 582 (1080)
T KOG0437|consen 530 DYGEAEWKKQAKECLENLNT------------FSDETRNGFEDTLDWLGQWACSRSYGLGTRLPW 582 (1080)
T ss_pred hcCcHHHHHHHHHHHhhhhc------------cCHHHHHHHHHHHHHHHhhhhhccccCCCCCCC
Confidence 56778899999999999987 222223456667888999999999999985443
No 152
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=29.43 E-value=2.9e+02 Score=25.86 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHH----HH----HHHHHcC
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE----RL----RIILENG 180 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~----~l----~~~~~~~ 180 (351)
+.+.+..-++...+ ..++..+-+|.-.+......-.-+.++.|++.|+..++++-...+. .+ +.+.+.|
T Consensus 151 ~~~~L~~ll~~l~~---i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~G 227 (321)
T TIGR03822 151 SPRRLGDIMARLAA---IDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAG 227 (321)
T ss_pred CHHHHHHHHHHHHh---CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcC
Confidence 44445544444433 3456666666532111000001133445666775556666543222 22 2222345
Q ss_pred CCeeeeeeec-cccCcCc--hhhHHHHHHHhCCcEEE
Q 018711 181 IPVVSNQVQH-SVVDMRP--QQKMAELCQLTGVKLIT 214 (351)
Q Consensus 181 ~~~~~~q~~~-n~~~~~~--~~~~l~~~~~~gi~via 214 (351)
+ ...+|.-+ .-++... -.++++.+.+.|+...-
T Consensus 228 i-~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyy 263 (321)
T TIGR03822 228 I-PMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYY 263 (321)
T ss_pred C-EEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEE
Confidence 4 33344332 2222332 24677788887776443
No 153
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.23 E-value=5.4e+02 Score=26.91 Aligned_cols=133 Identities=10% Similarity=0.148 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccC-cCchhhHHHHHHHhCCcEEEeccccccccC
Q 018711 146 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVMGGLLS 224 (351)
Q Consensus 146 e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~~gi~via~~pl~~G~L~ 224 (351)
.++..|.-+-+.+.|--||-+| .++.++.++-..-.++ ++-|=++. ...-..+++.|.+. .|+....
T Consensus 557 qLLtEmDG~e~~k~V~ViAATN-Rpd~ID~ALlRPGRlD--~iiyVplPD~~aR~~Ilk~~~kk-------mp~~~~v-- 624 (693)
T KOG0730|consen 557 QLLTEMDGLEALKNVLVIAATN-RPDMIDPALLRPGRLD--RIIYVPLPDLEARLEILKQCAKK-------MPFSEDV-- 624 (693)
T ss_pred HHHHHcccccccCcEEEEeccC-ChhhcCHHHcCCcccc--eeEeecCccHHHHHHHHHHHHhc-------CCCCccc--
Confidence 3445555555667777788877 7888888776432444 44554442 12234677766542 1322210
Q ss_pred ccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCC
Q 018711 225 EKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLG 304 (351)
Q Consensus 225 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~ 304 (351)
.+.......+.|.+ ..+..+|.+ .|+.|+...=.+ +..
T Consensus 625 --------------------dl~~La~~T~g~SG--------Ael~~lCq~-------A~~~a~~e~i~a-------~~i 662 (693)
T KOG0730|consen 625 --------------------DLEELAQATEGYSG--------AEIVAVCQE-------AALLALRESIEA-------TEI 662 (693)
T ss_pred --------------------cHHHHHHHhccCCh--------HHHHHHHHH-------HHHHHHHHhccc-------ccc
Confidence 00001111111111 345566654 455555444332 112
Q ss_pred cHhHHHHhhccccCCCCHHHHHHHHHHH
Q 018711 305 LAEHIQDTNAIFMLSLDEDDVNSIQEVT 332 (351)
Q Consensus 305 ~~~~l~enl~a~~~~L~~e~~~~L~~~~ 332 (351)
..+|.++.+++....++.++++.-++..
T Consensus 663 ~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred cHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 2899999999998899999988766654
No 154
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=28.72 E-value=1e+02 Score=24.21 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 166 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS 166 (351)
+..+.+.|+.+.....|.+++..++.-.....+....++.|...| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 556666666666678999999999876555567778888777765 4444443
No 155
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=28.13 E-value=2e+02 Score=26.32 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHh--CCcEEE
Q 018711 148 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLT--GVKLIT 214 (351)
Q Consensus 148 ~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~--gi~via 214 (351)
.++++++++...-+-|||+.++.+++.++.+.+ .+.+++. .+....-.++++.+++. .+.+++
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~g--aD~I~ld--~~~p~~l~~~~~~~~~~~~~i~i~A 235 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAG--ADILQLD--KFSPEELAELVPKLRSLAPPVLLAA 235 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC--CCEEEEC--CCCHHHHHHHHHHHhccCCCceEEE
Confidence 456666665433346999999999999988755 4555554 22222223555555543 355544
No 156
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.10 E-value=3.9e+02 Score=25.48 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=57.7
Q ss_pred EEEEecCCCC----------CccHHHHHHHHHHHHHc-Cc---ccEEEec--cccHHHHHHHHH--cCCCeeeeeeeccc
Q 018711 131 MLQFHWWDYS----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSV 192 (351)
Q Consensus 131 l~~lH~p~~~----------~~~~~e~~~al~~l~~~-Gk---ir~iGvS--~~~~~~l~~~~~--~~~~~~~~q~~~n~ 192 (351)
.+.||.|+.. ...++++++++.++.++ |+ ++++=+. |.+.+.++++.+ .+.+..++-++||+
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 3678887532 12278899999987754 22 2244343 345566666555 24557788899998
Q ss_pred cCcC---ch----hhHHHHHHHhCCcEEEecccccc
Q 018711 193 VDMR---PQ----QKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 193 ~~~~---~~----~~~l~~~~~~gi~via~~pl~~G 221 (351)
.... +. ..+.+..+++|+.+......+..
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~d 330 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKD 330 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcC
Confidence 4211 11 35677788889999998877653
No 157
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=28.03 E-value=1.3e+02 Score=25.99 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=26.7
Q ss_pred CccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHH
Q 018711 128 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 173 (351)
Q Consensus 128 ~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l 173 (351)
.+|.++||..++ .+.+..+.+......++.+|++.+....+
T Consensus 73 ~~d~Vqlhg~e~-----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES-----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC-----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 478999998752 22334444333456899999998766554
No 158
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=27.95 E-value=3e+02 Score=28.53 Aligned_cols=96 Identities=8% Similarity=-0.018 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec-cccHHHHHHHHHcCCCeeeee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 187 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~q 187 (351)
+.+.++.+ ..+|.|||=+.+.....+... .+.+...+.+....-.++.+||. |-+++.+.++.+ ...++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~-~~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSK-KNGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 44555554 348999998875553222222 23313333333333357789987 678888988887 34689999
Q ss_pred eeccccCcCchhhHHHHHHHhCCcEE
Q 018711 188 VQHSVVDMRPQQKMAELCQLTGVKLI 213 (351)
Q Consensus 188 ~~~n~~~~~~~~~~l~~~~~~gi~vi 213 (351)
++-+.- ......++..++.++.++
T Consensus 85 LHG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCC--cccHHHHHHhhhcCCcEE
Confidence 986531 111234444444455554
No 159
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.94 E-value=2.6e+02 Score=21.17 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCcccEEEeccccHHHHHHHHHcC-CCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 147 ALNHLTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 147 ~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
+-.+|...++.|++.. ...++.++++.+ .+..++--..+. ..-..+..+|+.++|.++.|.
T Consensus 4 ~~~~l~~a~ragkl~~------G~~~v~kai~~gkaklViiA~D~~~---~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 4 FNRELRVAVDTGKVIL------GSKRTIKAIKLGKAKLVIVASNCPK---DIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred HHHHHHHHHHcCCEEE------cHHHHHHHHHcCCceEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEC
Confidence 4556788888998742 455566666643 556666555442 234688999999999997763
No 160
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.86 E-value=4.2e+02 Score=23.23 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHH----cCCCe
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 183 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~----~~~~~ 183 (351)
++.+. ...+-+.|.++|.++|++- .|..... -.+.++.+.+.... .+..+++......++.+.+ .+.+.
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 45554 4445556999999999988 3322222 34555666666666 3444555555655655444 45554
Q ss_pred eeeeeeccccCcC------------chhhHHHHHHHhCCcE
Q 018711 184 VSNQVQHSVVDMR------------PQQKMAELCQLTGVKL 212 (351)
Q Consensus 184 ~~~q~~~n~~~~~------------~~~~~l~~~~~~gi~v 212 (351)
..+-...|..+.. .-...++++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4444445542111 1246799999999998
No 161
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=27.38 E-value=2.3e+02 Score=20.72 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=38.2
Q ss_pred HHHHHHcCcccEEEeccccHHHHHHHHHcC-CCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 151 LTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 151 l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
+++|++.|++. ....++.++++.+ ....++--..+. ..-..+..+|+.++|.++-+.
T Consensus 3 ~~~~~ragkl~------~G~~~v~kai~~gkaklViiA~D~~~---~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV------IGTKQTVKALKRGSVKEVVVAEDADP---RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE------EcHHHHHHHHHcCCeeEEEEECCCCH---HHHHHHHHHHHHcCCCEEEEC
Confidence 56777888753 2556677777754 445555555553 234578999999999998665
No 162
>PLN02444 HMP-P synthase
Probab=27.17 E-value=7e+02 Score=25.60 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHH-cCCCee
Q 018711 106 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVV 184 (351)
Q Consensus 106 ~~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~-~~~~~~ 184 (351)
.+++.+.+...+++-.+ +-+|.+-+|.-- ..+.++.++ + |-.||-+-.-..+...+. ++
T Consensus 295 ~~lt~d~~~d~ieeQae----qGVDfmTIH~Gv--------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~---- 354 (642)
T PLN02444 295 ENLTWEVFRETLIEQAE----QGVDYFTIHAGV--------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH---- 354 (642)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEChhh--------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC----
Confidence 36889999999988887 678999999853 233334343 3 667766655554444433 22
Q ss_pred eeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccccCccc
Q 018711 185 SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKF 227 (351)
Q Consensus 185 ~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L~g~~ 227 (351)
.=|++. ..-+++++.|+++++.+- |+-|+=.|.+
T Consensus 355 ----kENPlY-e~FD~ileI~k~YDVtlS----LGDGLRPG~i 388 (642)
T PLN02444 355 ----KENFAY-EHWDDILDICNQYDIALS----IGDGLRPGSI 388 (642)
T ss_pred ----CcCchH-HHHHHHHHHHHHhCeeee----ccCCcCCCcc
Confidence 223443 223689999999999874 5666544433
No 163
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=27.03 E-value=5.9e+02 Score=24.72 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=62.5
Q ss_pred HHHHHHHHHHH--------hhcCCCCccEEEEecCCCCC----ccHHHHHHHHHHHHHc-CcccEEEec---cccHHHHH
Q 018711 111 SIVRESIDVSR--------RRMDVPCLDMLQFHWWDYSN----PGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLR 174 (351)
Q Consensus 111 ~~i~~~~~~SL--------~~L~~d~iDl~~lH~p~~~~----~~~~e~~~al~~l~~~-Gkir~iGvS---~~~~~~l~ 174 (351)
+.++..+++-. ++...-..|++.||..+.+. ..-++..++.++..+. +.---|+=| ..+++.++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHH
Confidence 45666666544 22222357899999754321 1124555665555332 222223222 46889999
Q ss_pred HHHHc--CCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEeccccccc
Q 018711 175 IILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 222 (351)
Q Consensus 175 ~~~~~--~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~ 222 (351)
++++. |-++.++-..... .-+.+.+.|+++|..+++++|..-+.
T Consensus 208 aaLe~~~G~kpLL~SAt~e~----Ny~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 208 KAAEVAEGERCLLASANLDL----DYEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHhCCCCcEEEecCchh----hHHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 99884 3345433222221 23589999999999999999876553
No 164
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=26.89 E-value=3.3e+02 Score=25.03 Aligned_cols=100 Identities=14% Similarity=0.281 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCC--------CCccHHHHHHHHHHHHHc-CcccEEEecccc--------
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY--------SNPGYLDALNHLTDLKEE-GKIKTVALTNFD-------- 169 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~--------~~~~~~e~~~al~~l~~~-Gkir~iGvS~~~-------- 169 (351)
+.++..+...+.+. ..+|++ +++.|-...+ ....+..+.+.++.+++. |.--.||+..+.
T Consensus 70 ~~~~~~l~~~L~~~-~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~ 146 (281)
T TIGR00677 70 NMPIEMIDDALERA-YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES 146 (281)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC
Confidence 45666666666555 666643 2333332211 111134466666666664 444689998763
Q ss_pred HH-HHHHHHH---cCCCeeeeeeeccccCcCchhhHHHHHHHhCCcE
Q 018711 170 TE-RLRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 212 (351)
Q Consensus 170 ~~-~l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~v 212 (351)
.+ ++..+.+ .|..+.+-|.-|+. ..-.++++.|++.|+.+
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQLFYDV---DNFLKFVNDCRAIGIDC 190 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccceecH---HHHHHHHHHHHHcCCCC
Confidence 11 2444433 47778888988885 33358889999987654
No 165
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=26.88 E-value=1.3e+02 Score=27.61 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=56.0
Q ss_pred hcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec------cccHHHHHHHHHc-CCCeeeeeeeccccCc
Q 018711 123 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT------NFDTERLRIILEN-GIPVVSNQVQHSVVDM 195 (351)
Q Consensus 123 ~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS------~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~ 195 (351)
+..-+.-|+..+..|.-...+ + +..++..-++ |=|+ -|+...+.++.++ ++++.++-+.||+-+
T Consensus 158 k~a~E~~~~~IIDsaaG~gCp---V---i~sl~~aD~a--i~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~- 228 (284)
T COG1149 158 KHAKELADLLIIDSAAGTGCP---V---IASLKGADLA--ILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD- 228 (284)
T ss_pred HhhhhhcceeEEecCCCCCCh---H---HHhhccCCEE--EEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc-
Confidence 333333788888777432221 2 3334444443 3333 2455566666665 889999999997632
Q ss_pred CchhhHHHHHHHhCCcEEEecccccc
Q 018711 196 RPQQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 196 ~~~~~~l~~~~~~gi~via~~pl~~G 221 (351)
. ++-++|++.|+.+++.-|+..-
T Consensus 229 --s-~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 229 --S-EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred --h-HHHHHHHHcCCCeeEECCcchh
Confidence 2 7999999999999999998653
No 166
>PRK02866 cyanate hydratase; Validated
Probab=26.73 E-value=82 Score=26.04 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccCCCCHHHHHHHHH
Q 018711 267 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 330 (351)
Q Consensus 267 ~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~L~~e~~~~L~~ 330 (351)
+.+.+.-.+.|+|-.++|=+==++.-.+++++.|-.+.++++.+...+.+ .|+++....|..
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~ 69 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQE 69 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhc
Confidence 44555555566666666655544444555566777776688888777765 588887776664
No 167
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.54 E-value=3.8e+02 Score=23.06 Aligned_cols=102 Identities=21% Similarity=0.163 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccH--HHHHHHHHcCCCeeeeee
Q 018711 111 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 188 (351)
Q Consensus 111 ~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~--~~l~~~~~~~~~~~~~q~ 188 (351)
..+...+.+.++..+...--+.+-=.............+.+..|++.|- .+.+.++.. ..+..+. ..+++.+-+
T Consensus 99 ~~~~~~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~--~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK--RLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH--hCCCCeEEE
Confidence 3455667777777665431222111111111213455689999999997 456665533 3334433 245777777
Q ss_pred eccccCcC--------chhhHHHHHHHhCCcEEEec
Q 018711 189 QHSVVDMR--------PQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 189 ~~n~~~~~--------~~~~~l~~~~~~gi~via~~ 216 (351)
..+++... .-..++..|+..|+.+++-.
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 76655321 12467899999999988743
No 168
>PRK10200 putative racemase; Provisional
Probab=26.45 E-value=4.5e+02 Score=23.23 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCC-----------ccHHHHHHHHHHHHHcCcccEEEeccccHHHH
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----------PGYLDALNHLTDLKEEGKIKTVALTNFDTERL 173 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~-----------~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l 173 (351)
-+-+.+++=++..-.+.+.|+++.+.+|.++..+ ...+.+.+.++.|.+.| ++.|-+...+....
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 3566777777888888999999999999975221 12566778888888887 68888886555443
No 169
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=26.40 E-value=2.8e+02 Score=22.80 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcc-cEEEeccccHHHHHHHHHc-CCCee
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVV 184 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gki-r~iGvS~~~~~~l~~~~~~-~~~~~ 184 (351)
++.--.+++.+.+-|+..|-+.+|+= ++ ..++.+....+.+.+.+|.. +.|-++....-.-..+.+. |+...
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G----~~--~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRaA 81 (141)
T PRK12613 8 DAHGNALKELIKSFLQEEGYDIIDVT----DI--NSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVAA 81 (141)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEcC----CC--CCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEE
Confidence 45666799999999999998888873 22 23478888889999999998 7788888776666666553 44333
Q ss_pred eeeeeccccCcCchhhHHHHHHHh-CCcEEEec
Q 018711 185 SNQVQHSVVDMRPQQKMAELCQLT-GVKLITYG 216 (351)
Q Consensus 185 ~~q~~~n~~~~~~~~~~l~~~~~~-gi~via~~ 216 (351)
.+.-+ ..-..++++ |..+++++
T Consensus 82 ~~~d~----------~~A~~ar~hNnaNVl~lG 104 (141)
T PRK12613 82 EVSDE----------RSAYMTRGHNNARMITMG 104 (141)
T ss_pred EECCH----------HHHHHHHHHcCCcEEEEC
Confidence 32222 334445554 68888765
No 170
>PRK14847 hypothetical protein; Provisional
Probab=25.92 E-value=4.1e+02 Score=25.22 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc----ccEEEeccccHHHHHHHHHcCC-
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILENGI- 181 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk----ir~iGvS~~~~~~l~~~~~~~~- 181 (351)
.++.+. +-.+-+.|..+|+|.|.+ -.|. .. ++-.++..++.+.|+ ++-.+.+....+.++..++.+.
T Consensus 50 ~fs~ee-Kl~IA~~L~~lGVd~IEv---G~Pa--~s--~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~ 121 (333)
T PRK14847 50 PMDGAR-KLRLFEQLVAVGLKEIEV---AFPS--AS--QTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAG 121 (333)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEe---eCCC--CC--HHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCC
Confidence 456653 455677799999877765 2332 22 334667777777764 5666777777888888877422
Q ss_pred ---CeeeeeeeccccCcC------ch------hhHHHHHHHhCC---c---EEEecccc
Q 018711 182 ---PVVSNQVQHSVVDMR------PQ------QKMAELCQLTGV---K---LITYGTVM 219 (351)
Q Consensus 182 ---~~~~~q~~~n~~~~~------~~------~~~l~~~~~~gi---~---via~~pl~ 219 (351)
...-+-++-|.++.. .+ .+.+++|++++. + .+.++|-.
T Consensus 122 ~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 122 SPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 223344444443321 11 357789999965 3 36666643
No 171
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=25.81 E-value=5.4e+02 Score=23.82 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc-c-cEEEeccccHHHHHHH
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-I-KTVALTNFDTERLRII 176 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-i-r~iGvS~~~~~~l~~~ 176 (351)
..+.+.+++-++..++ +. +-+.+-.-=+|+ .. .++.++.|.++++.|. + -++|+-+.+.+.+..+
T Consensus 90 ~l~~~~L~~l~~~i~~-~~-~~~~isi~trpd--~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 90 YAPVEVLKEMYEQALS-YD-DVVGLSVGTRPD--CV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred CCCHHHHHHHHHHHhC-CC-CEEEEEEEecCC--cC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 4677888887777765 21 112221111333 33 3678899999999998 5 5789998877665443
No 172
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=25.65 E-value=2.7e+02 Score=22.08 Aligned_cols=50 Identities=2% Similarity=-0.162 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHhhcCCC---CccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 018711 108 MTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDLKEE 157 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d---~iDl~~lH~p~~~~~~~~e~~~al~~l~~~ 157 (351)
.-+..+++-+.++...+..+ -.|++++-.+.....+..++.+.|+.+.+.
T Consensus 62 V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 62 VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 46777888888888777653 479999999877665577887777776654
No 173
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.58 E-value=3.3e+02 Score=25.70 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=56.5
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCc-ccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHH
Q 018711 129 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 206 (351)
Q Consensus 129 iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 206 (351)
.++.++-.|-+ .+-++.+.++++.-. =-+.|=|-++.+.+..+++.+ .++++|+..+.+-. ..-.++..+|+
T Consensus 203 ~~i~~iEeP~~-----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~~GGit~~~~i~~~A~ 276 (354)
T cd03317 203 YGLLMIEQPLA-----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGRVGGLTEALKIHDLCQ 276 (354)
T ss_pred CCccEEECCCC-----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccccCCHHHHHHHHHHHH
Confidence 45666665543 223556677766533 335566778889999998855 47788887765421 12368899999
Q ss_pred HhCCcEEEecccccc
Q 018711 207 LTGVKLITYGTVMGG 221 (351)
Q Consensus 207 ~~gi~via~~pl~~G 221 (351)
.+|+.++..+...++
T Consensus 277 ~~gi~~~~g~~~es~ 291 (354)
T cd03317 277 EHGIPVWCGGMLESG 291 (354)
T ss_pred HcCCcEEecCcccch
Confidence 999999865544333
No 174
>PTZ00081 enolase; Provisional
Probab=25.57 E-value=5.9e+02 Score=25.18 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC--cccEEEe--ccccHHHHHHHHHcCCCe
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVAL--TNFDTERLRIILENGIPV 183 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G--kir~iGv--S~~~~~~l~~~~~~~~~~ 183 (351)
.+++.+.+-+.+.++.+ +++++-.|-+.. -|+.+.+|.++= .+.-+|= +..++..+..+++.+ .+
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~~-----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~-aa 349 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQD-----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKK-AC 349 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCcc-----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhC-CC
Confidence 67888888887888765 467777765432 355556665553 4544442 345788999998855 47
Q ss_pred eeeeeeccccCc-CchhhHHHHHHHhCCcEEEe
Q 018711 184 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 184 ~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~ 215 (351)
+++|+..|-+-. ....++..+|+++|+.++..
T Consensus 350 d~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 350 NALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred CEEEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 788888775321 12357999999999998874
No 175
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.56 E-value=6e+02 Score=24.33 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=57.8
Q ss_pred EEecCCCC----------CccHHHHHHHHHHHH-HcCc---ccEEEec--cccHHHHHHHHH--cCCCeeeeeeeccccC
Q 018711 133 QFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVD 194 (351)
Q Consensus 133 ~lH~p~~~----------~~~~~e~~~al~~l~-~~Gk---ir~iGvS--~~~~~~l~~~~~--~~~~~~~~q~~~n~~~ 194 (351)
-||.+++. ..+++++++++.++. +.|+ |+|+=+. |.+.+.+.++.+ .+.+..++-++||+..
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 38988632 112578889887554 4454 3444344 456677766665 2566789999999875
Q ss_pred c----Cch----hhHHHHHHHhCCcEEEecccccc
Q 018711 195 M----RPQ----QKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 195 ~----~~~----~~~l~~~~~~gi~via~~pl~~G 221 (351)
. .+. ..+.+..+++|+.+......+..
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 2 122 24566777889999998877654
No 176
>PRK07329 hypothetical protein; Provisional
Probab=25.41 E-value=4.9e+02 Score=23.20 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCC--------CccHHHHH----HHHHHHHHcC-cccEEEeccc----------c-
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYS--------NPGYLDAL----NHLTDLKEEG-KIKTVALTNF----------D- 169 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~--------~~~~~e~~----~al~~l~~~G-kir~iGvS~~----------~- 169 (351)
...+++-|.+...||+ |.-+|+.+.. ....++++ +.+.++.+.+ ++..+|=-.. +
T Consensus 82 ~~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~ 160 (246)
T PRK07329 82 EDDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEEL 160 (246)
T ss_pred HHHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcCh
Confidence 3455666777778998 8999986321 11133444 7788888876 7666653221 1
Q ss_pred ---H----HHHHHHHHcCCCeeeeeeecc-ccCcCchhhHHHHHHHhCCcEEEec
Q 018711 170 ---T----ERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 170 ---~----~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
. +.++.+.+++..+.+|-..+. ......-..+++.|++.|+..+..+
T Consensus 161 ~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~g 215 (246)
T PRK07329 161 KAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIG 215 (246)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEec
Confidence 1 112333334555655554321 1111112456888888887644433
No 177
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=25.20 E-value=1.8e+02 Score=23.25 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEe
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 165 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGv 165 (351)
+..+.+.|+.+...-+|.+++...+.-.....+.+..++.|.+.| |+-+-+
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~ 101 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG-VRLVSV 101 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC-CEEEEC
Confidence 455666666666667789999988876555667788888888877 444443
No 178
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.13 E-value=5.1e+02 Score=23.31 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.4
Q ss_pred hhHHHHHHHhCCcEEEe
Q 018711 199 QKMAELCQLTGVKLITY 215 (351)
Q Consensus 199 ~~~l~~~~~~gi~via~ 215 (351)
...++.|+..|..++.+
T Consensus 97 ~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQL 113 (279)
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 47899999999998875
No 179
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=24.67 E-value=6e+02 Score=23.95 Aligned_cols=82 Identities=6% Similarity=0.041 Sum_probs=54.1
Q ss_pred cEEEEecCCCCCccHHHHHHHHHHHHHcCccc-EEEeccccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHh
Q 018711 130 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLT 208 (351)
Q Consensus 130 Dl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~ 208 (351)
++.++-.|-+. ++.|.+++++-.|. +.|=|-++...+..+++.+ ..+++|+..+.+- .-.+.++.|+++
T Consensus 162 ~l~~iEqP~~~-------~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~-a~dvi~ik~~~~G--Git~~lkiA~~~ 231 (327)
T PRK02901 162 PLEYVEQPCAT-------VEELAELRRRVGVPIAADESIRRAEDPLRVARAG-AADVAVLKVAPLG--GVRAALDIAEQI 231 (327)
T ss_pred CceEEecCCCC-------HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEeCcchhC--CHHHHHHHHHHc
Confidence 55666655321 45666676653332 4455556777788887754 4788888887642 225788899999
Q ss_pred CCcEEEecccccc
Q 018711 209 GVKLITYGTVMGG 221 (351)
Q Consensus 209 gi~via~~pl~~G 221 (351)
|+.++..+.+.++
T Consensus 232 gi~v~v~s~~es~ 244 (327)
T PRK02901 232 GLPVVVSSALDTS 244 (327)
T ss_pred CCcEEEeCCcccH
Confidence 9999987766554
No 180
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=24.65 E-value=1.4e+02 Score=22.74 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=23.6
Q ss_pred HHHHHHHHHH---HcCcccEEEeccccHHHHHHHHHc
Q 018711 146 DALNHLTDLK---EEGKIKTVALTNFDTERLRIILEN 179 (351)
Q Consensus 146 e~~~al~~l~---~~Gkir~iGvS~~~~~~l~~~~~~ 179 (351)
..+..|.++. ++-.+..+|||..+.+.+.+..+.
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 4444444444 244679999999999888888763
No 181
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.62 E-value=75 Score=25.71 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.9
Q ss_pred cCchhhHHHHHHHhCCcEEEecccc
Q 018711 195 MRPQQKMAELCQLTGVKLITYGTVM 219 (351)
Q Consensus 195 ~~~~~~~l~~~~~~gi~via~~pl~ 219 (351)
+....++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445689999999999999998775
No 182
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.40 E-value=2.4e+02 Score=25.78 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCC--CCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeee
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 185 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~--~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 185 (351)
++.+ -+..+-+.|..+|+++|++-.+-.|. |...+.+++...+... ..++..++. -+...++.+++.+.+...
T Consensus 17 ~s~e-~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~---~~~~~~~~~-~~~~dv~~A~~~g~~~i~ 91 (274)
T cd07938 17 IPTE-DKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR---PGVRYSALV-PNLRGAERALAAGVDEVA 91 (274)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC---CCCEEEEEC-CCHHHHHHHHHcCcCEEE
Confidence 4544 45566667999999999997443332 2223345555555432 246666665 477789999987644433
Q ss_pred eeeecccc------CcCc------hhhHHHHHHHhCCcEEEe
Q 018711 186 NQVQHSVV------DMRP------QQKMAELCQLTGVKLITY 215 (351)
Q Consensus 186 ~q~~~n~~------~~~~------~~~~l~~~~~~gi~via~ 215 (351)
+-+..|-. +... -...+++++++|+.+...
T Consensus 92 i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~ 133 (274)
T cd07938 92 VFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGY 133 (274)
T ss_pred EEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 33333321 1111 135689999999988643
No 183
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=24.21 E-value=3.2e+02 Score=22.50 Aligned_cols=50 Identities=6% Similarity=0.010 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhhcC--CCCccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 018711 108 MTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 157 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~--~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~ 157 (351)
..+..+++.+.+.++.+. ....|++++-.+.....+..++.+.|..|.++
T Consensus 63 V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 63 VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 456677777777666442 23449999999877666688888888888766
No 184
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=23.98 E-value=3e+02 Score=20.21 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 018711 259 WSQFQVLLQTLKRIASKHGVSIPVVAVRY 287 (351)
Q Consensus 259 ~~~~~~~~~~l~~~a~~~g~s~~q~aL~~ 287 (351)
++.+-+.+.+|.++|++.|++..++|.-.
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 57788889999999999999999977543
No 185
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.98 E-value=4.1e+02 Score=25.40 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=58.9
Q ss_pred EEEecCCCCC----------ccHHHHHHHHHHHHHcCc----ccEEEec--cccHHHHHHHHHc--CCCeeeeeeecccc
Q 018711 132 LQFHWWDYSN----------PGYLDALNHLTDLKEEGK----IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVV 193 (351)
Q Consensus 132 ~~lH~p~~~~----------~~~~e~~~al~~l~~~Gk----ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~~ 193 (351)
+-||.+++.. ..+++++++++++.+++. |+++=+. |.+.+.++++.+. +.+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 6678776321 126889999998877542 3344333 4455666666652 45577888999987
Q ss_pred CcC----c-h---hhHHHHHHHhCCcEEEecccccc
Q 018711 194 DMR----P-Q---QKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 194 ~~~----~-~---~~~l~~~~~~gi~via~~pl~~G 221 (351)
... + . ..+.+.++++|+.+......+..
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTD 338 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 521 1 1 35677788999999988776653
No 186
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=23.97 E-value=2.3e+02 Score=22.35 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=29.3
Q ss_pred ccHHHHHHHHH-----cCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEecc
Q 018711 168 FDTERLRIILE-----NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 168 ~~~~~l~~~~~-----~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~p 217 (351)
-+.+.+.++++ .++.+..+-.--++-....|..+++++++.|+.+..+++
T Consensus 12 ~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~ 66 (121)
T PF01890_consen 12 APAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFSA 66 (121)
T ss_dssp --HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-H
T ss_pred CCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEECH
Confidence 34455554443 244455555555554445567999999999999999875
No 187
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.85 E-value=7.3e+02 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC----ceeeeeccCCCcHhHHHHhhcc
Q 018711 267 QTLKRIASKHGVSIPVVAVRYILDQPA----VAGSMIGVRLGLAEHIQDTNAI 315 (351)
Q Consensus 267 ~~l~~~a~~~g~s~~q~aL~~~l~~~~----v~~~i~G~~~~~~~~l~enl~a 315 (351)
+.+++||.+.|..|..+.|- +|.+.. ..+.|+---+ ++++...++-
T Consensus 385 Ksl~aIAd~~grdp~da~lD-~Lardg~~~~~~~~i~an~s--~e~l~rilah 434 (579)
T COG3653 385 KSLKAIADERGRDPLDAFLD-VLARDGERAGRWTTIVANMS--PEDLNRILAH 434 (579)
T ss_pred hhHHHHHHHhCCCHHHHHHH-HHHhcccccceeEEEEecCC--cchHHHHhcC
Confidence 78999999999999998888 554422 1223333323 7777766653
No 188
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=23.77 E-value=5.1e+02 Score=22.85 Aligned_cols=141 Identities=10% Similarity=-0.042 Sum_probs=72.7
Q ss_pred hhHHHHHHHHhcCC-Cee---ecCCCcchHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHHHh
Q 018711 47 KTLASFFFWALRDD-VSF---SFHLWDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 122 (351)
Q Consensus 47 ~~~~~~v~~A~~~G-~~f---DTA~~YG~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~SL~ 122 (351)
..+++++..|.+.| ..| |.++.|...+.. ...+. +. +++.+-.... ..++.+..-+++.+
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~-~~~~~-----~i-----~Il~GiEi~~----~~~~~~~~~~~~~~- 79 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPESKPE-LEDLL-----GF-----EIFRGVEIVA----SNPSKLRGLVGKFR- 79 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccchhHH-HHHhc-----CC-----cEEeeEEEec----CCHHHHHHHHHhcc-
Confidence 36777888888888 666 444444322211 11121 11 2222222221 24444444444322
Q ss_pred hcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-------ccHHHHHHHHHcCCCeeeeeeec-ccc-
Q 018711 123 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-------FDTERLRIILENGIPVVSNQVQH-SVV- 193 (351)
Q Consensus 123 ~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-------~~~~~l~~~~~~~~~~~~~q~~~-n~~- 193 (351)
..+|++.+| |. . +++. ..+.+.+.|.-||--. +....+..+.++++.+.++-.++ +.-
T Consensus 80 ----~~~d~v~v~-~~--~---~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~~~ 146 (237)
T PRK00912 80 ----KKVDVLAVH-GG--D---EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKSRG 146 (237)
T ss_pred ----CcccEEEEe-CC--C---HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhhcc
Confidence 256787888 21 1 2222 3578889998888653 23455566666665444333321 100
Q ss_pred C-c----CchhhHHHHHHHhCCcEEEec
Q 018711 194 D-M----RPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 194 ~-~----~~~~~~l~~~~~~gi~via~~ 216 (351)
. + .+...++..|++.|+.++.-|
T Consensus 147 ~~r~~~~~~~~~~~~~~~~~g~piiisS 174 (237)
T PRK00912 147 GRRARTLSNFRDNLALARKYDFPLVLTS 174 (237)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 0 0 122479999999998887533
No 189
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=23.73 E-value=5.9e+02 Score=24.62 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=55.0
Q ss_pred cchhhhHH-HHHHHHhcCC-CeeecCCCcchHHHHHHHHHhhcccCCCcccceeeeeecccCCCCCCCCHHHHHHHHHHH
Q 018711 43 LYVGKTLA-SFFFWALRDD-VSFSFHLWDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 120 (351)
Q Consensus 43 ~~~G~~~~-~~v~~A~~~G-~~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~~~~~~k~~~~~~~~s~~~i~~~~~~S 120 (351)
..+|.... ..+...++.| +.+=+...||..-.++-+.+.....+ + +...+ .+.+.+++.++.
T Consensus 76 ~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--------v---~~~d~----~d~~~l~~~l~~- 139 (386)
T PF01053_consen 76 FSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--------V---TFVDP----TDLEALEAALRP- 139 (386)
T ss_dssp ESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--------E---EEEST----TSHHHHHHHHCT-
T ss_pred ccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--------E---EEeCc----hhHHHHHhhccc-
Confidence 36788444 6688888999 88888889998777777777654322 1 11111 255656555544
Q ss_pred HhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC
Q 018711 121 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 158 (351)
Q Consensus 121 L~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G 158 (351)
..+++++-.|......+.++-..-+-+++.|
T Consensus 140 -------~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g 170 (386)
T PF01053_consen 140 -------NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG 170 (386)
T ss_dssp -------TEEEEEEESSBTTTTB---HHHHHHHHHHTT
T ss_pred -------cceEEEEEcCCCcccccccHHHHHHHHHHhC
Confidence 6778899888654433333333333455555
No 190
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.71 E-value=5.5e+02 Score=23.18 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEe-cCCCCCccHHHHHHHHHHHHHcC-cccEEEeccccHHHHHHHHHcC--CC
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENG--IP 182 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH-~p~~~~~~~~e~~~al~~l~~~G-kir~iGvS~~~~~~l~~~~~~~--~~ 182 (351)
.++.+...+-+ +.|.++|+++|.+-+.- +|+ -++.++.+.+.. .++..+++..+...++.+.+.+ ..
T Consensus 16 ~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~--------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIA-RQLDELGVDVIEAGFPAASPG--------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEeCCCCCHH--------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCC
Confidence 45666555544 44999999999996321 221 235555555532 3777778766788888888765 22
Q ss_pred eeeeeeeccc--c------CcCch------hhHHHHHHHhCCcEE
Q 018711 183 VVSNQVQHSV--V------DMRPQ------QKMAELCQLTGVKLI 213 (351)
Q Consensus 183 ~~~~q~~~n~--~------~~~~~------~~~l~~~~~~gi~vi 213 (351)
++.+.+-++. . ++..+ .+.+++++++|+.+.
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4444444332 1 11111 367889999997655
No 191
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.37 E-value=7.8e+02 Score=24.84 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHH---------------HcCcccEEEecc------ccHH
Q 018711 113 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK---------------EEGKIKTVALTN------FDTE 171 (351)
Q Consensus 113 i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~---------------~~Gkir~iGvS~------~~~~ 171 (351)
|-..++...+.++. -+.++.++.|+.........-.+|+.++ +.+.|--||.++ .+..
T Consensus 100 IGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~ 178 (519)
T PRK02910 100 LQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLT 178 (519)
T ss_pred hccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHH
Confidence 33334444344443 3679999999765432222222222222 234577778754 2346
Q ss_pred HHHHHHHc-CCCee
Q 018711 172 RLRIILEN-GIPVV 184 (351)
Q Consensus 172 ~l~~~~~~-~~~~~ 184 (351)
++.++++. |+++.
T Consensus 179 EikrlL~~~Gi~vn 192 (519)
T PRK02910 179 ELRRLLATLGIDVN 192 (519)
T ss_pred HHHHHHHHcCCeEE
Confidence 67777763 54443
No 192
>PRK08227 autoinducer 2 aldolase; Validated
Probab=23.34 E-value=5.8e+02 Score=23.33 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=41.6
Q ss_pred hHHHHHHHhCCcEEEeccccccccCccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCC-
Q 018711 200 KMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV- 278 (351)
Q Consensus 200 ~~l~~~~~~gi~via~~pl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~- 278 (351)
.+.+.|++.||.+++|.|-+... .. . . +.+.-...+|.+.|.
T Consensus 131 ~v~~ea~~~G~Plla~~prG~~~-~~-----------------~----------------~---~~ia~aaRiaaELGAD 173 (264)
T PRK08227 131 QLVDAGLRYGMPVMAVTAVGKDM-VR-----------------D----------------A---RYFSLATRIAAEMGAQ 173 (264)
T ss_pred HHHHHHHHhCCcEEEEecCCCCc-Cc-----------------h----------------H---HHHHHHHHHHHHHcCC
Confidence 67799999999999987764321 00 0 0 123455667777763
Q ss_pred ----CHHHHHHHHHHhCCCceeeeeccCC
Q 018711 279 ----SIPVVAVRYILDQPAVAGSMIGVRL 303 (351)
Q Consensus 279 ----s~~q~aL~~~l~~~~v~~~i~G~~~ 303 (351)
..+.-.++.+..-..+.++|.|-.+
T Consensus 174 iVK~~y~~~~f~~vv~a~~vPVviaGG~k 202 (264)
T PRK08227 174 IIKTYYVEEGFERITAGCPVPIVIAGGKK 202 (264)
T ss_pred EEecCCCHHHHHHHHHcCCCcEEEeCCCC
Confidence 2223456666666667777776655
No 193
>PRK09726 antitoxin HipB; Provisional
Probab=23.30 E-value=78 Score=23.34 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccCCCcHhHHHHhhccccCCC
Q 018711 267 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSL 320 (351)
Q Consensus 267 ~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~~~~~~~l~enl~a~~~~L 320 (351)
..++++..+.|+|..++|-+--++++.++-..-|.+..+.+.+...+.+++.++
T Consensus 15 ~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~ 68 (88)
T PRK09726 15 NAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSM 68 (88)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCc
Confidence 566666777788877777665555444444334444444666766666666543
No 194
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=23.26 E-value=5.3e+02 Score=23.92 Aligned_cols=86 Identities=6% Similarity=0.002 Sum_probs=54.5
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCc-ccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHH
Q 018711 129 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 206 (351)
Q Consensus 129 iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 206 (351)
+++.++-.|-+. . +.+..+++.-- =-..|=|-++.+.+..+++.+ .++++|+.....-. ..-.++.+.|+
T Consensus 183 ~~i~~iEqP~~~----~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~-~~d~i~ik~~~~GGi~~~~~i~~~a~ 254 (307)
T TIGR01927 183 GRIAFLEEPLPD----A---DEMSAFSEATGTAIALDESLWELPQLADEYGPG-WRGALVIKPAIIGSPAKLRDLAQKAH 254 (307)
T ss_pred CCceEEeCCCCC----H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC-CCceEEECchhcCCHHHHHHHHHHHH
Confidence 455566655421 1 45566655532 234455567778888887754 36777777665321 12368999999
Q ss_pred HhCCcEEEeccccccc
Q 018711 207 LTGVKLITYGTVMGGL 222 (351)
Q Consensus 207 ~~gi~via~~pl~~G~ 222 (351)
.+|+.++..+.+.+|+
T Consensus 255 ~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 255 RLGLQAVFSSVFESSI 270 (307)
T ss_pred HcCCCEEEECccchHH
Confidence 9999999877666654
No 195
>PF14502 HTH_41: Helix-turn-helix domain
Probab=23.24 E-value=91 Score=20.49 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHhCCCce
Q 018711 266 LQTLKRIASKHGVS--IPVVAVRYILDQPAVA 295 (351)
Q Consensus 266 ~~~l~~~a~~~g~s--~~q~aL~~~l~~~~v~ 295 (351)
++.+.+++++++++ ..|-||+++-....|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 36678889999887 4799999999988775
No 196
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=23.22 E-value=6.6e+02 Score=23.93 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCccEE-EEecCCCC----------CccHHHHHHHHHHHHH-cCc---ccEEEec--cccHHHHHHHHHc--CC-----C
Q 018711 127 PCLDML-QFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GI-----P 182 (351)
Q Consensus 127 d~iDl~-~lH~p~~~----------~~~~~e~~~al~~l~~-~Gk---ir~iGvS--~~~~~~l~~~~~~--~~-----~ 182 (351)
.++|+. .||.++.. ...++++++++.+..+ .|. |+++=+. |.+.+.+.++.+. +. .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 457775 47877422 1226778787776655 342 3333232 4455666666651 22 4
Q ss_pred eeeeeeeccccCcC------c----hhhHHHHHHHhCCcEEEecccccc
Q 018711 183 VVSNQVQHSVVDMR------P----QQKMAELCQLTGVKLITYGTVMGG 221 (351)
Q Consensus 183 ~~~~q~~~n~~~~~------~----~~~~l~~~~~~gi~via~~pl~~G 221 (351)
..++-++||++... + -..+.++.+++|+.+......+.-
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 331 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSD 331 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 67899999987422 1 136788888899999988877653
No 197
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=23.21 E-value=4e+02 Score=21.42 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhhcCC----CCccEEEEecCCCCCccHHHHHHHHHHHHH
Q 018711 108 MTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 156 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~----d~iDl~~lH~p~~~~~~~~e~~~al~~l~~ 156 (351)
..+..+++.+.+++..+.. ...|++++-.+.....++.++.+.|+.+.+
T Consensus 61 V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 61 VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 5778888888888887654 568999999998766667777777776655
No 198
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=23.16 E-value=1.8e+02 Score=22.59 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC
Q 018711 114 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 158 (351)
Q Consensus 114 ~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G 158 (351)
+..+.+.++.+. -.|.+++++.+.-.....+.+..+..|.+.|
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~g 84 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKG 84 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCC
Confidence 344555555554 5799999999876655677888888887776
No 199
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=23.15 E-value=3.6e+02 Score=23.56 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeee
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 187 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q 187 (351)
.+.+.+.+..+...+..+ ..++-=|- ..+.++++.+|+++| |+--...-|+.+|...+.+.|.. ++.
T Consensus 61 ~~~e~~i~~a~~l~~~~~-----~~~iKIP~-----T~~gl~ai~~L~~~g-i~v~~T~V~s~~Qa~~Aa~AGA~--yvs 127 (211)
T cd00956 61 TDAEGMVAEARKLASLGG-----NVVVKIPV-----TEDGLKAIKKLSEEG-IKTNVTAIFSAAQALLAAKAGAT--YVS 127 (211)
T ss_pred CCHHHHHHHHHHHHHhCC-----CEEEEEcC-----cHhHHHHHHHHHHcC-CceeeEEecCHHHHHHHHHcCCC--EEE
Confidence 367778777777665444 23443332 247888999999998 44333336899999999987743 366
Q ss_pred eeccccCcCc------hhhHHHHHHHhCCc
Q 018711 188 VQHSVVDMRP------QQKMAELCQLTGVK 211 (351)
Q Consensus 188 ~~~n~~~~~~------~~~~l~~~~~~gi~ 211 (351)
..+|-++... -.++.++++++|+.
T Consensus 128 P~vgR~~~~g~dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 128 PFVGRIDDLGGDGMELIREIRTIFDNYGFD 157 (211)
T ss_pred EecChHhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 6666543221 13788889888865
No 200
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=8.5e+02 Score=25.85 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHhCCC-ce-eeeeccCCCcHhHHHH--hhcccc--CCCCHHHHHHHHHHHh
Q 018711 266 LQTLKRIASKHGVSI-PVVAVRYILDQPA-VA-GSMIGVRLGLAEHIQD--TNAIFM--LSLDEDDVNSIQEVTK 333 (351)
Q Consensus 266 ~~~l~~~a~~~g~s~-~q~aL~~~l~~~~-v~-~~i~G~~~~~~~~l~e--nl~a~~--~~L~~e~~~~L~~~~~ 333 (351)
+++++.--++.+-+. ..+.=.|++++|. ++ +..+.... ++.+++ .-+..+ ..||+++.++|.+...
T Consensus 458 L~~lk~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e~--~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~ 530 (998)
T KOG2019|consen 458 LKKLKQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPEF--AEKLEQEEATKLEEKKAALTEEDLAEIAKAGE 530 (998)
T ss_pred HHHHHHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCchh--hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 444544333334444 3556679999984 22 22233333 333322 212112 2799999999987765
No 201
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=22.98 E-value=2.5e+02 Score=22.29 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHc
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 179 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 179 (351)
+.++-+..+++.+.| ++.|+||..+.+.+.+..+.
T Consensus 48 ~~~l~~~~~~~~~~~-v~vi~vs~d~~~~~~~~~~~ 82 (149)
T cd03018 48 LCALRDSLELFEAAG-AEVLGISVDSPFSLRAWAEE 82 (149)
T ss_pred HHHHHHHHHHHHhCC-CEEEEecCCCHHHHHHHHHh
Confidence 334444445555544 78999999888777777663
No 202
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=22.85 E-value=2e+02 Score=28.55 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=40.6
Q ss_pred hhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEec-cccHHHHHHHHHcCCCeeeeeeeccc
Q 018711 122 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 192 (351)
Q Consensus 122 ~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n~ 192 (351)
..+|.|++=+.+... .+...+ .+....+.+... ++.+||. |-+++.+.++.+ ...++++|++-+-
T Consensus 274 ~~~GaD~lGfIf~~~-SpR~V~-~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~-~~~lD~vQLHG~e 339 (454)
T PRK09427 274 YDAGAVYGGLIFVEK-SPRYVS-LEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAK-QLSLAAVQLHGDE 339 (454)
T ss_pred HhCCCCEEeeEeCCC-CCCCCC-HHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHH-HcCCCEEEeCCCC
Confidence 347888888763322 222221 333343333332 8889988 668888888877 4468999998763
No 203
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.85 E-value=1.7e+02 Score=24.61 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcC-cccEEEecccc--HHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 144 YLDALNHLTDLKEEG-KIKTVALTNFD--TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 144 ~~e~~~al~~l~~~G-kir~iGvS~~~--~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
..+++.+|.++++.| +|..+|..+.. ...+..++ + ..+.+..|+- ...-...+..+++.|+.++.-+
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--~--~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--G--VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--T---EEEEEEESS--HHHHHHHHHHHHHTT--EEEES
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--C--CceEEEEECC--HHHHHHHHHHHHHcCCcEEECC
Confidence 478899999998777 66666666643 45666665 3 4455555542 2233578888999999988744
No 204
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=22.82 E-value=2.8e+02 Score=19.56 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHhcCC--CeeecCCCc--ch--HHHHHHHHHhhcccC
Q 018711 45 VGKTLASFFFWALRDD--VSFSFHLWD--GP--AEDLYGIFINRVRRE 86 (351)
Q Consensus 45 ~G~~~~~~v~~A~~~G--~~fDTA~~Y--G~--sE~~lG~al~~~~~~ 86 (351)
.|..+.+.|..+++.| -.+|..... +. .++.+|..+.+.+.+
T Consensus 2 ~G~~~~~~i~~~l~~~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~ 49 (74)
T PF14213_consen 2 DGERLRDEIEPALKEGEKVVLDFEGVESITSSFLNEAFGQLVREFGEE 49 (74)
T ss_pred ChHHHHHHHHHHHhcCCeEEEECCCcccccHHHHHHHHHHHHHHcCHH
Confidence 4566667788888888 556777654 43 678889999887744
No 205
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=22.73 E-value=5.8e+02 Score=23.16 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCC------CCccHHHHHHHHHHHHHcCcccEEEecccc--------H-H
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY------SNPGYLDALNHLTDLKEEGKIKTVALTNFD--------T-E 171 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~------~~~~~~e~~~al~~l~~~Gkir~iGvS~~~--------~-~ 171 (351)
+.++..+...+... ..+|++ +++.|-...+ ....+....+.++.+++..---+||+..+. . .
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~ 145 (272)
T TIGR00676 69 GATREEIREILREY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEE 145 (272)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHH
Confidence 35777777777754 667633 2333433211 011134455555556654223578877632 1 3
Q ss_pred HHHHHHH---cCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEecccccccc
Q 018711 172 RLRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 223 (351)
Q Consensus 172 ~l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~pl~~G~L 223 (351)
.+..+.+ .|..+.+-|.-|++ ..-.++++.|++.|+.+ |+--|++
T Consensus 146 ~~~~L~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 146 DIENLKRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred HHHHHHHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 3444443 47778888988886 33457899999998775 5555543
No 206
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=22.64 E-value=2e+02 Score=28.03 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCcccEEEeccccHHHHHHHHH----cCCCeeeeeeeccccCcCchhhHHHHHHH--hCCcEEEeccccc
Q 018711 147 ALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQQKMAELCQL--TGVKLITYGTVMG 220 (351)
Q Consensus 147 ~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~----~~~~~~~~q~~~n~~~~~~~~~~l~~~~~--~gi~via~~pl~~ 220 (351)
++++..+... .+...+++.+...++ .|+.|.++-.-.| .+.++.+++ +=++++++. +
T Consensus 123 iYqa~~~~~~-------~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~-------~~~~~~~~~~~R~~giVSRG---G 185 (423)
T TIGR00190 123 IYQAAEKVHG-------AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVL-------LEYVERLKRSGRITGIVSRG---G 185 (423)
T ss_pred HHHHHHHhcC-------ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhCCCccCeecCc---H
Confidence 5666555542 566678887777765 2555554443333 577888877 446666653 2
Q ss_pred cccCccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCC
Q 018711 221 GLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVS 279 (351)
Q Consensus 221 G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s 279 (351)
.++.+ ++.....+..+.+..+.+-+++++|.+|
T Consensus 186 s~~~~--------------------------WM~~~~~ENPlye~fD~lLeI~~~yDVt 218 (423)
T TIGR00190 186 AILAA--------------------------WMLHHHKENPLYKNFDYILEIAKEYDVT 218 (423)
T ss_pred HHHHH--------------------------HHHHcCCcCchHHHHHHHHHHHHHhCee
Confidence 23221 1122223344555568889999998765
No 207
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.49 E-value=2.9e+02 Score=24.09 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecccc----HHHHHHHHHcCCCeeee
Q 018711 111 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD----TERLRIILENGIPVVSN 186 (351)
Q Consensus 111 ~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~----~~~l~~~~~~~~~~~~~ 186 (351)
..+.+.+++.++.+|.+. .++ .+ .... ..+..+.++.+.++| +..|=++..+ ...++++.+.++|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~---~~-~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV---FD-AQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE---EE-STTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EEe---CC-CCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 457888888899888642 222 22 2222 477889999999887 8888777544 36677777777766554
Q ss_pred eee
Q 018711 187 QVQ 189 (351)
Q Consensus 187 q~~ 189 (351)
-..
T Consensus 87 d~~ 89 (257)
T PF13407_consen 87 DSD 89 (257)
T ss_dssp SST
T ss_pred ecc
Confidence 443
No 208
>PLN00191 enolase
Probab=22.39 E-value=7.8e+02 Score=24.49 Aligned_cols=97 Identities=7% Similarity=0.033 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEE-ec-cccHHHHHHHHHcCCCeee
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA-LT-NFDTERLRIILENGIPVVS 185 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iG-vS-~~~~~~l~~~~~~~~~~~~ 185 (351)
.+++.+.+-+.+.++. .++.++-.|-+. +-|+.+.+|.++.+|.-+| =+ ..++..+.++++.+ ..++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~-----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~-aad~ 363 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ-----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK-ACNA 363 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc-----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC-CCCE
Confidence 4666666666655543 457778777543 3466777788888887666 22 35688888888855 4777
Q ss_pred eeeeccccCc-CchhhHHHHHHHhCCcEEEe
Q 018711 186 NQVQHSVVDM-RPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 186 ~q~~~n~~~~-~~~~~~l~~~~~~gi~via~ 215 (351)
+++..|-+-. ..-.++.++|+++|+.++.-
T Consensus 364 i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 364 LLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 8888775321 12368999999999999864
No 209
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=22.28 E-value=7.5e+02 Score=24.24 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcC--cccEEEec--cccHHHHHHHHHcCCCe
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALT--NFDTERLRIILENGIPV 183 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~G--kir~iGvS--~~~~~~l~~~~~~~~~~ 183 (351)
++++...+-+++.++. .++.++-.|-+.. -++.+.+|.+.- .+.-.|=- ..+...+..+++.+ .+
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~~-----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~-a~ 330 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSEE-----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMG-VA 330 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCcc-----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhC-CC
Confidence 4555555555555543 4677777775432 356666676654 45433322 23588888888755 47
Q ss_pred eeeeeeccccCc-CchhhHHHHHHHhCCcEEEe
Q 018711 184 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 184 ~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~ 215 (351)
+++|+..|-.-. ..-.++..+|+.+|+.++..
T Consensus 331 d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~ 363 (425)
T TIGR01060 331 NSILIKPNQIGTLTETLDAVELAKKAGYTAVIS 363 (425)
T ss_pred CEEEecccccCCHHHHHHHHHHHHHcCCcEEEe
Confidence 788888775421 12368899999999996653
No 210
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=22.19 E-value=5.4e+02 Score=22.59 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecccc------HHHHHHHHHc--
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD------TERLRIILEN-- 179 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~------~~~l~~~~~~-- 179 (351)
.+.+.-.+-++....+++.||||+=+-. + .+....+.+...+|.++-|+ |.|+ .+.+...++.
T Consensus 75 ~~~~~~~~ll~~~~~~~~~d~vDiEl~~------~--~~~~~~l~~~~~~~~~kvI~-S~H~f~~tp~~~~l~~~~~~~~ 145 (228)
T TIGR01093 75 GNEEEYLEELKRAADSPGPDFVDIELFL------P--DDAVKELINIAKKGGTKIIM-SYHDFQKTPSWEEIVERLEKAL 145 (228)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEccC------C--HHHHHHHHHHHHHCCCEEEE-eccCCCCCCCHHHHHHHHHHHH
Confidence 4555444556666688899999994322 1 23344444433567788777 4332 2333333331
Q ss_pred CCCeeeeeeeccccCcCchhhHHHHHHHh----CCcEEEec
Q 018711 180 GIPVVSNQVQHSVVDMRPQQKMAELCQLT----GVKLITYG 216 (351)
Q Consensus 180 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~----gi~via~~ 216 (351)
....+++-+-..+-+......++.+.++. .+.+++++
T Consensus 146 ~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~ 186 (228)
T TIGR01093 146 SYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMS 186 (228)
T ss_pred HhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 12245555554442222223455544332 35555443
No 211
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.12 E-value=5e+02 Score=22.13 Aligned_cols=94 Identities=10% Similarity=0.088 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHc--CcccEEEeccccHH--HHHHHHHcCCCee
Q 018711 109 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTE--RLRIILENGIPVV 184 (351)
Q Consensus 109 s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~--Gkir~iGvS~~~~~--~l~~~~~~~~~~~ 184 (351)
+++...+-+ +.| -+.+|++=+-++-. .....+.++++++. ++.-.+++-..++. +++.+.+.|..+.
T Consensus 10 ~~~~a~~~~----~~l-~~~v~~iev~~~l~----~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 10 DIEEALELA----EKV-ADYVDIIEIGTPLI----KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIV 80 (206)
T ss_pred CHHHHHHHH----HHc-ccCeeEEEeCCHHH----HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEE
Confidence 444444433 344 35677766632211 23345667777766 33333333223433 6777777776655
Q ss_pred eeeeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 185 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 185 ~~q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
++...-.. ..-.+++++|+++|+.++.
T Consensus 81 ~vh~~~~~---~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 81 TVLGVADD---ATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred EEeccCCH---HHHHHHHHHHHHcCCEEEE
Confidence 54443221 1125789999999998875
No 212
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=22.11 E-value=4.7e+02 Score=21.89 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=35.6
Q ss_pred cccEEEeccccHHHH------HHHHHc--CCCeeeeeeeccccCcC-------c------hhhHHHHHHHhCCcEEEecc
Q 018711 159 KIKTVALTNFDTERL------RIILEN--GIPVVSNQVQHSVVDMR-------P------QQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 159 kir~iGvS~~~~~~l------~~~~~~--~~~~~~~q~~~n~~~~~-------~------~~~~l~~~~~~gi~via~~p 217 (351)
.|...|+++.+..++ ..++.. .....++++-.|=.... . -..+++.++++|..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 455567776655433 233332 23455566555543221 1 13689999999999998887
Q ss_pred cc
Q 018711 218 VM 219 (351)
Q Consensus 218 l~ 219 (351)
..
T Consensus 116 ~~ 117 (198)
T cd01821 116 VT 117 (198)
T ss_pred cc
Confidence 53
No 213
>PLN02775 Probable dihydrodipicolinate reductase
Probab=22.08 E-value=4.7e+02 Score=24.27 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccc
Q 018711 115 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 192 (351)
Q Consensus 115 ~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~ 192 (351)
..+++.|..+..+|.|++.+-.- .| +-+.+.++.+.+.|+--=+|.+.|+.+++.++.+...-+.++-..||+
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT---~P--~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYT---LP--DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECC---Ch--HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 34455555555567886666543 33 567888888999999999999999999998877642224444444544
No 214
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=21.97 E-value=7.1e+02 Score=23.85 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=52.4
Q ss_pred cEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcC-chhhHHHHHHHh
Q 018711 130 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 208 (351)
Q Consensus 130 Dl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~l~~~~~~ 208 (351)
|-+.+-.|. +...+..+..+...+.+...-+...+.+.++++++...+..++..+.||.-.. +-..+.+.|+++
T Consensus 91 D~Vl~~~p~-----y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~ 165 (382)
T TIGR02080 91 DLLVAPHDC-----YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV 165 (382)
T ss_pred CEEEEcCCC-----cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc
Confidence 555554443 34455555555555555555555557778888775444566666666664222 235788999999
Q ss_pred CCcEEEecccccc
Q 018711 209 GVKLITYGTVMGG 221 (351)
Q Consensus 209 gi~via~~pl~~G 221 (351)
|+-++.=...+.+
T Consensus 166 g~~vvvD~a~~~~ 178 (382)
T TIGR02080 166 GAVVVVDNTFLSP 178 (382)
T ss_pred CCEEEEECCCccc
Confidence 9888765554433
No 215
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=21.97 E-value=7.5e+02 Score=24.14 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc---c-cHHHHHHHHHcCCC
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---F-DTERLRIILENGIP 182 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~---~-~~~~l~~~~~~~~~ 182 (351)
..+.+.+.+.+.+.+..... ..+-+.+-...+..- .+.+.+.++.+++.|.--+++.+| + +.+.++++.+.+
T Consensus 53 ~~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~-~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~g-- 128 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSC-YPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNG-- 128 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcC-CCCEEEEECCccccc-CHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcC--
Confidence 45778888888888775532 245555555533222 367788888888888777777343 3 567777777644
Q ss_pred eeeeeeeccccCcC--------ch-h---hHHHHHHHhCCcEEEeccccccc
Q 018711 183 VVSNQVQHSVVDMR--------PQ-Q---KMAELCQLTGVKLITYGTVMGGL 222 (351)
Q Consensus 183 ~~~~q~~~n~~~~~--------~~-~---~~l~~~~~~gi~via~~pl~~G~ 222 (351)
++.+++..+-.+.. +. . +.++.+.+ ++.+++..|+..|+
T Consensus 129 ld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGi 179 (404)
T TIGR03278 129 VREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGV 179 (404)
T ss_pred CCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCc
Confidence 33444444443311 11 1 22344444 46677777776664
No 216
>PLN02321 2-isopropylmalate synthase
Probab=21.94 E-value=8.8e+02 Score=25.31 Aligned_cols=106 Identities=13% Similarity=0.170 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEE-EecCCCCCccHHHHHHHHHHHHHc-----Cc-ccEEEeccccHHHHHHHHHc
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEE-----GK-IKTVALTNFDTERLRIILEN 179 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~-lH~p~~~~~~~~e~~~al~~l~~~-----Gk-ir~iGvS~~~~~~l~~~~~~ 179 (351)
.++.+.-.+ +-+-|..+|+|+|.+-+ ..+|+ + .+.+..+.+.... +. .+-.+++..+...++.+.+.
T Consensus 104 ~~s~eeKl~-Ia~~L~~lGVd~IEvGfP~~Sp~----D-~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~a 177 (632)
T PLN02321 104 TLTSKEKLD-IARQLAKLGVDIIEAGFPIASPD----D-LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEA 177 (632)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEeCcCCCcc----H-HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHH
Confidence 466665444 44559999999999853 22222 1 2334444333222 12 22335555567777777764
Q ss_pred --CCC--eeeeeeeccccC------cCch------hhHHHHHHHhCCcEEEeccc
Q 018711 180 --GIP--VVSNQVQHSVVD------MRPQ------QKMAELCQLTGVKLITYGTV 218 (351)
Q Consensus 180 --~~~--~~~~q~~~n~~~------~~~~------~~~l~~~~~~gi~via~~pl 218 (351)
+.+ -..+.+.-|.++ ...+ .+.+++|+++|...+.|+|-
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E 232 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE 232 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc
Confidence 221 223333333332 1111 36788999999876777764
No 217
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.94 E-value=6.4e+02 Score=23.31 Aligned_cols=23 Identities=13% Similarity=-0.114 Sum_probs=14.9
Q ss_pred CceeeeeccCCCcHhHHHHhhcc
Q 018711 293 AVAGSMIGVRLGLAEHIQDTNAI 315 (351)
Q Consensus 293 ~v~~~i~G~~~~~~~~l~enl~a 315 (351)
.+..|+=|.+..+.++++..++.
T Consensus 199 ~vPLVlHGgSG~~~e~~~~ai~~ 221 (283)
T PRK07998 199 PVPLVIHGGSGIPPEILRSFVNY 221 (283)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHc
Confidence 34556667776667777776653
No 218
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.93 E-value=4.9e+02 Score=24.69 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=51.9
Q ss_pred cEEEEecCCCCCccHHHHHHHHHH-HHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCc-CchhhHHHHHHH
Q 018711 130 DMLQFHWWDYSNPGYLDALNHLTD-LKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 207 (351)
Q Consensus 130 Dl~~lH~p~~~~~~~~e~~~al~~-l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~ 207 (351)
|-+.+..|.+.. +...+.. ++..| ++..-+...+.+.+++++....+..++..+.||.-. ..-+.+.+.|++
T Consensus 91 d~Vl~~~~~y~~-----t~~~~~~~~~~~G-~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~ 164 (366)
T PRK08247 91 DELIVSSDLYGG-----TYRLFEEHWKKWN-VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKK 164 (366)
T ss_pred CEEEEecCCcCc-----HHHHHHHHhhccC-ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence 556666654322 2222222 22233 445555556778888877544556667777887422 234688999999
Q ss_pred hCCcEEEeccccccc
Q 018711 208 TGVKLITYGTVMGGL 222 (351)
Q Consensus 208 ~gi~via~~pl~~G~ 222 (351)
+|+-++.=..++.++
T Consensus 165 ~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 165 HGLLLIVDNTFYTPV 179 (366)
T ss_pred cCCEEEEECCCcccc
Confidence 999888766654443
No 219
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.89 E-value=5.8e+02 Score=22.81 Aligned_cols=84 Identities=12% Similarity=0.004 Sum_probs=44.5
Q ss_pred CccEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEecc-ccHHHHHHHHHcC-CCeeeeeeeccccCcCchhhHHHHH
Q 018711 128 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENG-IPVVSNQVQHSVVDMRPQQKMAELC 205 (351)
Q Consensus 128 ~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~ 205 (351)
.+|.+.+|..+..-..-.--++.+.++++.-.+.-|.... .+.+.+.++++.+ +.-.++=.-++-- .-.-.++.++|
T Consensus 168 G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~-~~~~~~~~~~~ 246 (254)
T TIGR00735 168 GAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR-EITIGEVKEYL 246 (254)
T ss_pred CCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC-CCCHHHHHHHH
Confidence 4566777766542100011234455555555566666654 4677888888754 3322221111111 12235789999
Q ss_pred HHhCCcE
Q 018711 206 QLTGVKL 212 (351)
Q Consensus 206 ~~~gi~v 212 (351)
+++|+.+
T Consensus 247 ~~~gi~~ 253 (254)
T TIGR00735 247 AERGIPV 253 (254)
T ss_pred HHCCCcc
Confidence 9999864
No 220
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.86 E-value=6.9e+02 Score=23.71 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHH-HHHHHHHHHHcCcccEEEeccccHHHH
Q 018711 108 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERL 173 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e-~~~al~~l~~~Gkir~iGvS~~~~~~l 173 (351)
.+-+.+.++++..+++=. .|+.+||+......++++ =+.+|..|.+.= -.-+|+|.|+..-+
T Consensus 157 a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~ 219 (347)
T COG2089 157 ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGIL 219 (347)
T ss_pred ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchh
Confidence 355778888877666543 399999997533222443 245555555543 34689999876533
No 221
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=21.43 E-value=4.1e+02 Score=20.92 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhhcCC---CCccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 018711 108 MTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 157 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~---d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~ 157 (351)
..+..+++.+.+.++.+.. ...|++++-.+.....+..++.+.|..|.++
T Consensus 62 V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 62 VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 5777888888888776643 4689999999987666688888888887665
No 222
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.26 E-value=8.5e+02 Score=24.54 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCccHHHHHHHHHHHHHcCc-ccEEEeccccHHHHHHHHH----cCC
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILE----NGI 181 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~~~~e~~~al~~l~~~Gk-ir~iGvS~~~~~~l~~~~~----~~~ 181 (351)
.++.+.-. .+-+.|.++|+|+|.+- +|.. .+ .-+++++.+.+.++ .+..+++......++.+.+ .+.
T Consensus 22 ~~s~e~K~-~ia~~L~~~Gv~~IE~G---~p~~-s~---~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~ 93 (513)
T PRK00915 22 SLTVEEKL-QIAKQLERLGVDVIEAG---FPAS-SP---GDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEA 93 (513)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEc---CCCC-Ch---HHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCC
Confidence 46666544 45555999999999884 3321 11 12344455544443 5556666555677777774 233
Q ss_pred CeeeeeeeccccCc------Cch------hhHHHHHHHhCCcEEEecc
Q 018711 182 PVVSNQVQHSVVDM------RPQ------QKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 182 ~~~~~q~~~n~~~~------~~~------~~~l~~~~~~gi~via~~p 217 (351)
+...+-+..|.++. ..+ .+.+++|+++|..+. +++
T Consensus 94 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-f~~ 140 (513)
T PRK00915 94 PRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-FSA 140 (513)
T ss_pred CEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EEe
Confidence 33333333433321 111 368889999998764 443
No 223
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.22 E-value=6.9e+02 Score=23.42 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=60.4
Q ss_pred CccEEEEecCCCC----CccHHHHHHHHHHHHHcCcccE-EEecc---ccHHHHHHHHHc--CCCeeeeeeeccccCcCc
Q 018711 128 CLDMLQFHWWDYS----NPGYLDALNHLTDLKEEGKIKT-VALTN---FDTERLRIILEN--GIPVVSNQVQHSVVDMRP 197 (351)
Q Consensus 128 ~iDl~~lH~p~~~----~~~~~e~~~al~~l~~~Gkir~-iGvS~---~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~ 197 (351)
-.|++-+|-.+.. +....|+.+.||++.+.=+|-. ||=|+ -+++.++++.+. |-.+- -...|+ +...
T Consensus 164 gadmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRcl--LaSanl-dlDy 240 (403)
T COG2069 164 GADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCL--LASANL-DLDY 240 (403)
T ss_pred CCceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEE--eecccc-ccCH
Confidence 3678888865321 2226899999999888877654 46665 467888888873 43333 233332 2233
Q ss_pred hhhHHHHHHHhCCcEEEeccccc
Q 018711 198 QQKMAELCQLTGVKLITYGTVMG 220 (351)
Q Consensus 198 ~~~~l~~~~~~gi~via~~pl~~ 220 (351)
+.+.+.|.++|=.|.+|+++.-
T Consensus 241 -~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 241 -ERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred -HHHHHHHHhcCceEEEeeccCh
Confidence 5899999999999999998753
No 224
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=21.20 E-value=4.1e+02 Score=26.32 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=44.3
Q ss_pred HHHHHcCcccEEEeccccHHHHHHHHH-----c-CCC-eeeeeeeccccCcCchhhHHHHHHHhCCcEEEec
Q 018711 152 TDLKEEGKIKTVALTNFDTERLRIILE-----N-GIP-VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 216 (351)
Q Consensus 152 ~~l~~~Gkir~iGvS~~~~~~l~~~~~-----~-~~~-~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~ 216 (351)
..+-+.|-..++|....+++++++.+. . +-+ |-+|-+ +++-+...+..+++.|.++++.++..+
T Consensus 37 aAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 37 IAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 345678999999999999988887765 1 113 555543 333222335678999999999988765
No 225
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.10 E-value=3.2e+02 Score=24.10 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCcccEEEecc-ccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
-.++++.+.+... . --||..+ .++++++++.+.|-+|. .+ +..+.++++.|..+||.++.
T Consensus 51 a~e~I~~l~~~~p--~-~lIGAGTVL~~~q~~~a~~aGa~fi-----Vs---P~~~~ev~~~a~~~~ip~~P 111 (211)
T COG0800 51 ALEAIRALAKEFP--E-ALIGAGTVLNPEQARQAIAAGAQFI-----VS---PGLNPEVAKAANRYGIPYIP 111 (211)
T ss_pred HHHHHHHHHHhCc--c-cEEccccccCHHHHHHHHHcCCCEE-----EC---CCCCHHHHHHHHhCCCcccC
Confidence 3556666665555 2 2477776 58999999999876553 33 34567999999999998773
No 226
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.92 E-value=2.7e+02 Score=21.50 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEEecc
Q 018711 167 NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 217 (351)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~~p 217 (351)
..+.+.+..+.... +|+++=+-----.+.+..++.++++++||++..|..
T Consensus 38 ~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 38 DLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 34555666555533 244333332221133456788999999999998763
No 227
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=20.78 E-value=3e+02 Score=26.66 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccCcCc-hhhHHHHHHHhC-CcEEEecccccc
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTG-VKLITYGTVMGG 221 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~l~~~~~~g-i~via~~pl~~G 221 (351)
+.++...++++....-|...=+...+.+.++++++...+...+..+-||.-.-+ -..+.+.|+++| +.++.=..++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 467788888755555555544555678899888875566888888889864443 357899999999 999987777766
Q ss_pred ccC
Q 018711 222 LLS 224 (351)
Q Consensus 222 ~L~ 224 (351)
++.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 543
No 228
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=20.77 E-value=6.5e+02 Score=24.15 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=49.0
Q ss_pred cEEEEecCCCCCccHHHHHHHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccccC-cCchhhHHHHHHHh
Q 018711 130 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLT 208 (351)
Q Consensus 130 Dl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~~ 208 (351)
|-+++-.|.+ ...+..+..+...+-+.-.-+...+.+.+.+++....+..++..+.||.- ..+.+.+.+.|+++
T Consensus 92 D~Vl~~~~~y-----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~ 166 (386)
T PRK08045 92 DLLVAPHDCY-----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREA 166 (386)
T ss_pred CEEEEcCCCc-----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHc
Confidence 4455544432 33444444444444333333444567777777654445666666666632 12346888999999
Q ss_pred CCcEEEecccccc
Q 018711 209 GVKLITYGTVMGG 221 (351)
Q Consensus 209 gi~via~~pl~~G 221 (351)
|+-++.=...+.+
T Consensus 167 g~~vivDeay~~~ 179 (386)
T PRK08045 167 GAVSVVDNTFLSP 179 (386)
T ss_pred CCEEEEECCCCcc
Confidence 9888765555444
No 229
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=20.75 E-value=26 Score=23.00 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=6.9
Q ss_pred cHhHHHHhhcccc
Q 018711 305 LAEHIQDTNAIFM 317 (351)
Q Consensus 305 ~~~~l~enl~a~~ 317 (351)
+.+.+....++++
T Consensus 37 ~~~~~~~ia~~l~ 49 (55)
T PF01381_consen 37 SLDTLKKIAKALG 49 (55)
T ss_dssp BHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC
Confidence 3555555555544
No 230
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=20.56 E-value=8.8e+02 Score=24.43 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=49.3
Q ss_pred CccEEEEecCCCCCccHHHHHHHHHHHH------------------HcCcccEEEecc------ccHHHHHHHHHc-CCC
Q 018711 128 CLDMLQFHWWDYSNPGYLDALNHLTDLK------------------EEGKIKTVALTN------FDTERLRIILEN-GIP 182 (351)
Q Consensus 128 ~iDl~~lH~p~~~~~~~~e~~~al~~l~------------------~~Gkir~iGvS~------~~~~~l~~~~~~-~~~ 182 (351)
-++++.+|.|.+........-.+++.++ .+++|--||.++ .+.+++.++++. |+.
T Consensus 116 ~~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~ 195 (513)
T CHL00076 116 DSDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE 195 (513)
T ss_pred CCCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCe
Confidence 3689999999775432222222333332 245688888774 355777777773 544
Q ss_pred eeeeee--------------eccccC-cCchhhHHHHHHH-hCCcEEEecccc
Q 018711 183 VVSNQV--------------QHSVVD-MRPQQKMAELCQL-TGVKLITYGTVM 219 (351)
Q Consensus 183 ~~~~q~--------------~~n~~~-~~~~~~~l~~~~~-~gi~via~~pl~ 219 (351)
+.++-. .+|+.- +.....+-++.++ .|+.++...|++
T Consensus 196 vn~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 196 INQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 432221 122221 1112344555544 588888777764
No 231
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.43 E-value=4.6e+02 Score=25.98 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEecCCCCCc---cHHHHHHHHHHHHHcC-cccE---------EEeccccH---
Q 018711 107 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP---GYLDALNHLTDLKEEG-KIKT---------VALTNFDT--- 170 (351)
Q Consensus 107 ~~s~~~i~~~~~~SL~~L~~d~iDl~~lH~p~~~~~---~~~e~~~al~~l~~~G-kir~---------iGvS~~~~--- 170 (351)
.++.+.... +-+.|.++|.+.|.++ +....... -.++.|+.++.+++.. .++. .|.+++..
T Consensus 22 ~~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLP-ILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHH-HHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 345555544 4445888899999884 11100000 0122456666665542 2332 35555433
Q ss_pred -HHHHHHHHcCCCeeeeeeeccccCcCchhhHHHHHHHhCCcEEE
Q 018711 171 -ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 214 (351)
Q Consensus 171 -~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 214 (351)
..++++.++|+. ++.+-.++.+...-...+++++++|+-+.+
T Consensus 99 ~~~v~~A~~~Gvd--~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVENGID--IIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHCCCC--EEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 344555555644 444444332222335688899999876543
No 232
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.36 E-value=5.6e+02 Score=24.68 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=55.1
Q ss_pred EEecCCCC----------CccHHHHHHHHHHHHHcC-------cccEEEec--cccHHHHHHHHHc--CCCeeeeeeecc
Q 018711 133 QFHWWDYS----------NPGYLDALNHLTDLKEEG-------KIKTVALT--NFDTERLRIILEN--GIPVVSNQVQHS 191 (351)
Q Consensus 133 ~lH~p~~~----------~~~~~e~~~al~~l~~~G-------kir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n 191 (351)
.||.+++. ...++++++++.+...+- .|++.=|. |.+.+.++++.+. +.+.-++-++||
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN 300 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWN 300 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCC
Confidence 48987632 112677777766655433 35555455 4566776666652 455788999999
Q ss_pred ccCcC----ch----hhHHHHHHHhCCcEEEeccccc
Q 018711 192 VVDMR----PQ----QKMAELCQLTGVKLITYGTVMG 220 (351)
Q Consensus 192 ~~~~~----~~----~~~l~~~~~~gi~via~~pl~~ 220 (351)
++... +. ..+.+..+++|+.+......+.
T Consensus 301 ~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 301 PFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 87521 21 2466777888999988765554
No 233
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.33 E-value=6.7e+02 Score=23.86 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=58.5
Q ss_pred EEEecCCCC----------CccHHHHHHHHHHHHHcC--c--ccEEEec--cccHHHHHHHHHc--CCCeeeeeeecccc
Q 018711 132 LQFHWWDYS----------NPGYLDALNHLTDLKEEG--K--IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVV 193 (351)
Q Consensus 132 ~~lH~p~~~----------~~~~~e~~~al~~l~~~G--k--ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~~ 193 (351)
+-||.+++. ...++++++++.+..+.+ + ++++=+. |.+.+.+.++.+. +.+..++-++||++
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568887532 122577888888777654 2 2344444 4456777766652 45667888999997
Q ss_pred CcC----ch----hhHHHHHHHhCCcEEEeccccc
Q 018711 194 DMR----PQ----QKMAELCQLTGVKLITYGTVMG 220 (351)
Q Consensus 194 ~~~----~~----~~~l~~~~~~gi~via~~pl~~ 220 (351)
... +. ..+.+..+++|+.+......+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 421 11 3567778889999999988775
No 234
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=20.30 E-value=3.9e+02 Score=21.06 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhhcCCC------CccEEEEecCCCCCccHHHHHHHHHHHH
Q 018711 108 MTSSIVRESIDVSRRRMDVP------CLDMLQFHWWDYSNPGYLDALNHLTDLK 155 (351)
Q Consensus 108 ~s~~~i~~~~~~SL~~L~~d------~iDl~~lH~p~~~~~~~~e~~~al~~l~ 155 (351)
..+..+++.+.++.+....+ -.|++++-.+.....+..++.+.|+.|.
T Consensus 61 V~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 61 VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred hhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 57888999998888887642 5799999999876666777777776653
No 235
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=20.27 E-value=5.4e+02 Score=28.12 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCceeeeeccC--CCcHhHHHHhhccccC--CCCHHHHHHHHHHHhhCCCCCCcc
Q 018711 267 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVR--LGLAEHIQDTNAIFML--SLDEDDVNSIQEVTKKGKDLLGVI 342 (351)
Q Consensus 267 ~~l~~~a~~~g~s~~q~aL~~~l~~~~v~~~i~G~~--~~~~~~l~enl~a~~~--~L~~e~~~~L~~~~~~~~~~~~~~ 342 (351)
.....+|++.|+...++ +.|.. ..+.+++.+.+.-.+. +++|++-.+|-+.++.........
T Consensus 578 ~tA~aIA~~lGI~~~~v--------------i~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamt 643 (903)
T PRK15122 578 IVTAKICREVGLEPGEP--------------LLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFL 643 (903)
T ss_pred HHHHHHHHHcCCCCCCc--------------cchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEE
Confidence 56678899988853211 12221 1126677777765554 788888888888887666555666
Q ss_pred Cccccc
Q 018711 343 GDCGDE 348 (351)
Q Consensus 343 ~~~~~~ 348 (351)
||+-+|
T Consensus 644 GDGvND 649 (903)
T PRK15122 644 GDGIND 649 (903)
T ss_pred CCCchh
Confidence 777655
No 236
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=20.16 E-value=3.8e+02 Score=20.76 Aligned_cols=38 Identities=39% Similarity=0.609 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCcccEEEecccc--------HHHHHHHHHc-CCC
Q 018711 144 YLDALNHLTDLKEEGKIKTVALTNFD--------TERLRIILEN-GIP 182 (351)
Q Consensus 144 ~~e~~~al~~l~~~Gkir~iGvS~~~--------~~~l~~~~~~-~~~ 182 (351)
..++.++|+.|++.|. +-+=+||.. .+.+...++. +..
T Consensus 27 ~~~v~~~l~~L~~~g~-~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 27 YPEVPDALAELKEAGY-KVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 4568888999998885 344456655 4566666663 544
No 237
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=20.10 E-value=4.8e+02 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=21.9
Q ss_pred HHHHhCCCHHHHHHHHHHhCCC-ceeeeec
Q 018711 272 IASKHGVSIPVVAVRYILDQPA-VAGSMIG 300 (351)
Q Consensus 272 ~a~~~g~s~~q~aL~~~l~~~~-v~~~i~G 300 (351)
+|-.||.|.+.-.|+|++...+ -.+.++|
T Consensus 112 VaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 112 VAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 4455788999999999999873 3456666
No 238
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.08 E-value=1.8e+02 Score=22.68 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=13.4
Q ss_pred chhhHHHHHHHhCCcEEEe
Q 018711 197 PQQKMAELCQLTGVKLITY 215 (351)
Q Consensus 197 ~~~~~l~~~~~~gi~via~ 215 (351)
.+.+++++|+++|+.++.=
T Consensus 90 ~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp --HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHcCCEEEeC
Confidence 3568899999999998863
No 239
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.05 E-value=5.4e+02 Score=23.17 Aligned_cols=68 Identities=19% Similarity=0.113 Sum_probs=44.4
Q ss_pred cCCCCccEEEEecCC----------CCCccHHHHH-HHHHHHHHcCcccEEEeccccHHHHHHHHHcCCCeeeeeeeccc
Q 018711 124 MDVPCLDMLQFHWWD----------YSNPGYLDAL-NHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 192 (351)
Q Consensus 124 L~~d~iDl~~lH~p~----------~~~~~~~e~~-~al~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~ 192 (351)
+.++.||.+++=--| +..+.+.+++ +.+...++.|+. .|+...+++.+.++++.|+.+.++-....+
T Consensus 158 ~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~--~g~~~~~~~~~~~~~~~G~~~~~~~~D~~~ 235 (249)
T TIGR03239 158 AAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKP--CGILAPVEADARRYLEWGATFVAVGSDLGV 235 (249)
T ss_pred hCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCC--EEEcCCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence 345789998886422 2222233332 334456778885 577777888888888888888877777666
Q ss_pred c
Q 018711 193 V 193 (351)
Q Consensus 193 ~ 193 (351)
+
T Consensus 236 l 236 (249)
T TIGR03239 236 F 236 (249)
T ss_pred H
Confidence 5
Done!