BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018713
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
IT+ + + EA M + IGG+PVV+ ++ ++VG ++ RD+R
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD-EEGRLVGLLTNRDVR 148
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 237 RLRNVPIIEPGTPDIKNYITQSAVVQGLEGC--------KGRDWFDIIASQPISDLGLPF 288
+ R +P++ G + IT +V + G K F ++P+ ++
Sbjct: 34 KYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREI---- 89
Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342
+ VIT++ N I EA + N+GG P+V + +++ ++ RD+ LL
Sbjct: 90 -MEENVITLKENADIDEAIETFLTKNVGGAPIV-NDENQLISLITERDVIRALL 141
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI--RHLLLKPELFS 348
++VITI +E + A M+ + I G+PVVE +K+VG ++ +DI R L EL +
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVE--DEKVVGIITKKDIAAREGKLVKELMT 157
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
+ + EVIT+ + + EA K M +N I +PVV+ ++ K+VG +++ D+
Sbjct: 155 LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDL 202
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 272 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGN 331
+F +A I+ +GL M + ++ + + ++ AF R + + E + K+VG
Sbjct: 19 YFQSMAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV-SKVDDFLANEAKGTKVVGA 77
Query: 332 VSIRDIRHLLLKP 344
S++++ L KP
Sbjct: 78 QSLKEMVSKLKKP 90
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339
+ ++ + + + VIT + +E ++EAF++ I +PV++ + K++G V+ DI +
Sbjct: 4 TLKNIKVKDVXTKNVITAKRHEGVVEAFEKXLKYKISSLPVIDDEN-KVIGIVTTTDIGY 62
Query: 340 LLLKPE 345
L++ +
Sbjct: 63 NLIRDK 68
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
+A I +GL M + + I+S + + R+++ + E + K IVG SI
Sbjct: 2 MAKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ--EAKGKNIVGTYSIE 59
Query: 336 DIRHLLLKP 344
+ + L KP
Sbjct: 60 EFVNALEKP 68
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
+T+ + I+E + ++ G PVVE Q ++VG V+ RD+R
Sbjct: 99 VTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLR 140
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
+A I +GL M + + I+S + + R+++ + E + K IVG SI
Sbjct: 3 MAKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ--EAKGKNIVGTYSIE 60
Query: 336 DIRHLLLKP 344
+ + L KP
Sbjct: 61 EFVNALEKP 69
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
+T+ + I+E + ++ G PVVE Q ++VG V+ RD+R
Sbjct: 119 VTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLR 160
>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
Length = 378
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 11 SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVL 47
+KL CDA S KLP + AFAR+ V+
Sbjct: 102 AKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVV 138
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
IT SN I+EA K + +NI +P+V+ + K+VG ++ DI
Sbjct: 14 ITAHSNISIMEAAKILIKHNINHLPIVD-EHGKLVGIITSWDI 55
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341
VIT +E + +M NI G+PVV+ +++VG V+ DI L
Sbjct: 74 VITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLF 120
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
IT SN I+EA K + +NI +P+V+ + K+VG ++ DI
Sbjct: 12 ITAHSNISIMEAAKILIKHNINHLPIVD-EHGKLVGIITSWDI 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,008,347
Number of Sequences: 62578
Number of extensions: 284689
Number of successful extensions: 677
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 19
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)